BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000430
         (1517 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255565234|ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
 gi|223537171|gb|EEF38804.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
          Length = 1526

 Score = 2283 bits (5915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1147/1544 (74%), Positives = 1315/1544 (85%), Gaps = 45/1544 (2%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M++++PV A RRR+RG EA+ARA ALERLKALR+GGRRS +  GY+IK+E PI+DTV+ED
Sbjct: 1    MENDEPVTAARRRTRGPEATARASALERLKALRQGGRRSENGAGYDIKMETPIFDTVSED 60

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +YD LVA+RR EA+GFIVDDDGLGYGDEG+EEDWS AGLP SSD+   DG  +  K R +
Sbjct: 61   DYDKLVAQRRLEAQGFIVDDDGLGYGDEGEEEDWSQAGLPPSSDES--DGGETNNKNRSK 118

Query: 121  KRGKKENNQN----VRKPNPSLTAAAAM-MGKQRLSAMLTSTAMFKKSKDEKVKESESVI 175
            ++  ++  +     ++K N SL+AAAA  MGKQR+S+M TST    K++D+ + + E+++
Sbjct: 119  RKKTEKKEKGKSKVIKKVNSSLSAAAAALMGKQRISSMFTSTVF--KNRDKNL-DCENIV 175

Query: 176  DEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQ 235
            D+V+AEFAPDE DRERRR  V   +K    V ++  N  L     N         +N V+
Sbjct: 176  DDVIAEFAPDENDRERRR-RVQLPVKIEGDVVNLTVNGGLGRGVMNDC-------DNVVK 227

Query: 236  I-QNCDV------VEESKELKWESDNSTELTKRDNFVEVKEK---VKDEVNEDVKECKKL 285
            + QNC V      V E+KE++   D      KR+   EVKE    VK+E   +    + L
Sbjct: 228  LGQNCSVDEREGMVMEAKEVEKGVDYDE---KREILAEVKETAVVVKEETESE--RGRVL 282

Query: 286  NAKISTE-KDPLLSATAGWKEV-SGGNM----VLDEGKSGLNCQE-SEFEVDDDGSLPFY 338
            NAKIS E KDP  SA A W+ V SGGN     V +E KSG+ C E SEFE++ DGSLPFY
Sbjct: 283  NAKISIEEKDPAFSAMADWQAVRSGGNGSVAGVTEEVKSGVVCDEQSEFELEADGSLPFY 342

Query: 339  ILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            I+DAHE++ GANMGTLYLFGKVKAG+T+HSCC+VVKNMQRCVYAIPNG +F T+++++LE
Sbjct: 343  IIDAHEEIFGANMGTLYLFGKVKAGNTYHSCCMVVKNMQRCVYAIPNGSIFHTEDMIRLE 402

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
            KD EESRISP  FRKKLQDVA  LK EIANQ L+LNVS++ ++PVKR+YAF + +IP GE
Sbjct: 403  KDVEESRISPAEFRKKLQDVAYELKNEIANQFLSLNVSSFSMTPVKRKYAFERQDIPVGE 462

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
            NY LKINY FK+PPLPADLKGE F +LLGTH SALELFLVKRKVKGPSWLS+SKFS+CPA
Sbjct: 463  NYALKINYSFKEPPLPADLKGETFSALLGTHCSALELFLVKRKVKGPSWLSVSKFSTCPA 522

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             QRVSWCK+EIT DSPKDIRVSSSSK+  E+PPV VTAINLKT+ N++Q+VNEIVSAS++
Sbjct: 523  SQRVSWCKFEITADSPKDIRVSSSSKNTIEIPPVVVTAINLKTIINEKQNVNEIVSASLI 582

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
            CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF+KE T+RN++AGSNVL  ES
Sbjct: 583  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFSKEVTERNTQAGSNVLGIES 642

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SERALLNRLMI L KLDSDVLVGHNISGFDLDVLLHR+Q CRVPSSMWSKIGRLKRS MP
Sbjct: 643  SERALLNRLMIALNKLDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKIGRLKRSIMP 702

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL KG T+FGSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLT+LA+T+LNKDRKEV 
Sbjct: 703  KLTKGNTMFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELARTRLNKDRKEVT 762

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
            PHD+ +MFQ+ +SL+ELIE+GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR
Sbjct: 763  PHDIPRMFQSSKSLIELIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 822

Query: 819  AQRVEYLLLHAFRAKKYIVPDK--FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            AQRVEYLLLHAF AKKYIVPDK  F   KETKM K+R ++GVE++N EEL  + ANFDND
Sbjct: 823  AQRVEYLLLHAFHAKKYIVPDKNSFHLKKETKMTKRRIHNGVEEKNAEELDTDHANFDND 882

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
            +  ND  KGK+GPAY GGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTVE+S D
Sbjct: 883  SPENDRGKGKKGPAYVGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTD 942

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYG 996
            GLVP LPS KTTGVLPELLKNLV+RRRMVK+WMK ASGLK+QQLDIQQQALKLTANSMYG
Sbjct: 943  GLVPRLPSIKTTGVLPELLKNLVERRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYG 1002

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLGFSNSRFYAKPLAELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI+SG++DI K
Sbjct: 1003 CLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLEDITK 1062

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
            AKAIAGKVIQEVNKKY+CLEIDLDGLYKRMLLLKKKKYAAVK+QFKDG PYEVIERKGLD
Sbjct: 1063 AKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLD 1122

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRRDWSLLSKE+GDFCL+QILS  SCEDVVESIHNSLMKVQE+MR+GQVALEKY+ITKT
Sbjct: 1123 MVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYIITKT 1182

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTKPPEAYPDAKNQPHV VALRLKQSGY+TGCS GDTVPYIICCEQG + GSS GIAQRA
Sbjct: 1183 LTKPPEAYPDAKNQPHVMVALRLKQSGYTTGCSVGDTVPYIICCEQGATPGSSSGIAQRA 1242

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
            RHPDELKK DGKWMIDIDYY SQQIHPVVSRLCASI+GTSPERLADCLGLD SKFQ K S
Sbjct: 1243 RHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSS 1302

Query: 1297 ETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPET 1356
            E +++DP+SSLLFAV DEERYR CEPL+LSCPSCS TF+CPAV  SIC S+S  P+K + 
Sbjct: 1303 EAINNDPASSLLFAVNDEERYRSCEPLLLSCPSCSGTFECPAVFGSICTSISANPTKLQV 1362

Query: 1357 E---YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
            E    NFW  +RCPKCPEE + GRISP M+ANQVKRQA+GFVSMYYKGLM CDDETCK+ 
Sbjct: 1363 EESVSNFWCRMRCPKCPEEGDTGRISPAMLANQVKRQAEGFVSMYYKGLMTCDDETCKHI 1422

Query: 1414 TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS 1473
            T SLNLRLIGD+ERGTVCPNYPRCNGRLVRKYTEA+LYKQL+++C+LLDT R +EKM+  
Sbjct: 1423 TRSLNLRLIGDSERGTVCPNYPRCNGRLVRKYTEAELYKQLSFYCYLLDTVRCMEKMDAG 1482

Query: 1474 AKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
             +I LEK++ KIRP+V LA STVQ+IR+RCAYGWV+L+D++++V
Sbjct: 1483 TRISLEKKITKIRPMVDLAVSTVQKIRDRCAYGWVQLSDLSVTV 1526


>gi|359480801|ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
            vinifera]
          Length = 1522

 Score = 2276 bits (5899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1147/1543 (74%), Positives = 1312/1543 (85%), Gaps = 47/1543 (3%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M DE+P+VAGRRRSRGAEA+AR++AL+RLKALRRGGRRS D VG+ IK+E+PIYDTV ED
Sbjct: 1    MADEEPIVAGRRRSRGAEATARSDALQRLKALRRGGRRS-DGVGFQIKVEDPIYDTVDED 59

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            EYD LVA+RREE RGFIVDD+G GYGDEGQEEDWS+AG+P SSD+   + +R  KK+  +
Sbjct: 60   EYDKLVAKRREEFRGFIVDDNGSGYGDEGQEEDWSLAGVPPSSDESDGEAERPKKKKTEK 119

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVK--ESESVIDEV 178
            K    +           L+AAAAMMGKQRLS+M TS+ +FKKS+D+KVK    +S++D+V
Sbjct: 120  KDPPPKKPS-------PLSAAAAMMGKQRLSSMFTSS-VFKKSRDDKVKGLSCDSIVDDV 171

Query: 179  LAEFAPDEADRERRRRSVS---SNIKSFVSVNSVKTNSQLVT---NSTNSVKENSDLINN 232
            +AEFAPDEADRERRRR  S   S  ++FV   ++K     ++     T     + D +++
Sbjct: 172  IAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPISIRPEPTKVTIADGDSVSS 231

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDV------KECKKLN 286
               +QN ++VE    +K ES ++ +L    N   V+E V D V +        KE   LN
Sbjct: 232  --SMQNGNMVEGKGVVK-ESKDANDL----NCDAVEETVPDAVEDKSEQAVKRKEVHSLN 284

Query: 287  AKISTEKDPLLSA-TAGWKEV-SGGNMVLD-EGK---SGLNCQE-SEFEVDDDGSLPFYI 339
            AKI  EKD  LSA TAGW+ V +GGN     EG+     LNC+E ++F +D DGSLPFYI
Sbjct: 285  AKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLPFYI 344

Query: 340  LDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            LDAHE+  GANMG LYLFGKVKAGS +HSCCVVVKNM+RCVYAIPN  +F  DEIM+LEK
Sbjct: 345  LDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEIMRLEK 404

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            D E SR+SP A R KLQDVA GLK EIA QLLNLNVS + ++PVKR YAF +A+IP GEN
Sbjct: 405  DIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADIPVGEN 464

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            YVLKINYPFKDPPLPADLKGE FC+LLGTH SALELFL+KRK+ GP WLSISKFSSCPAP
Sbjct: 465  YVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFSSCPAP 524

Query: 520  QRVSWCKYEITVDSPKDIRV-SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
            +RVSWCK+E+TVD PKDIR+ +SSSK++AE+PPV VTAINLKT+ N++Q+VNEIVSASV+
Sbjct: 525  ERVSWCKFEVTVDCPKDIRILASSSKNIAEIPPVVVTAINLKTIINEKQNVNEIVSASVI 584

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
            CCHK KID+PML SEWK+PG+LSHFTVVRKLDGGIFPMGF KEA+DRNSKAG+NVLC E 
Sbjct: 585  CCHKVKIDSPMLPSEWKRPGVLSHFTVVRKLDGGIFPMGFTKEASDRNSKAGANVLCSEI 644

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA+ C+VP  MWSKIGRLKR  MP
Sbjct: 645  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAEACKVP--MWSKIGRLKRRVMP 702

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL +G TIFGSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLAKTQLNKDRKE+ 
Sbjct: 703  KLTRGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRKEIA 762

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
            P DV +MFQT ESL++LIEYGETDAWLSMELMFHLSVLPLTR LTNISGNLWGKTLQGAR
Sbjct: 763  PQDVSRMFQTSESLVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQGAR 822

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFT-YVKETKMAKQRSNHG-VEDRNVEELTNEDANFDND 876
            AQRVEYLLLH F AKKYIVPDK + +++ETK  K+R N G  EDRN++EL  +DA+ +ND
Sbjct: 823  AQRVEYLLLHEFHAKKYIVPDKISSHLRETKWTKRRMNQGGAEDRNIDELDVDDAHVEND 882

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
              HN+  KGK+GPAY+GGLVLEPK+GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD
Sbjct: 883  AHHNNQGKGKKGPAYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 942

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYG 996
            G VP LPSSKTTGVLPELLK LV+RR+ VK+ +KTASGLK+QQLDIQQQALKLTANSMYG
Sbjct: 943  GSVPRLPSSKTTGVLPELLKKLVERRKTVKSRLKTASGLKVQQLDIQQQALKLTANSMYG 1002

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLGFSNSRFYAKPLAELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI++G+DDI K
Sbjct: 1003 CLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITK 1062

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
            AKAIAGKVIQEVNKKY+CLEIDLDGLYKRMLLLKKKKYAAVK+QFKDG PYEVIERKGLD
Sbjct: 1063 AKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLD 1122

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRRDWSLLSKE+GDF LSQILS  SCEDVVESIHNSLMKVQEDMR+G+VALEKY+ITK+
Sbjct: 1123 MVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKS 1182

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTKPPEAYPD KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS GIAQRA
Sbjct: 1183 LTKPPEAYPD-KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRA 1241

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
            RHPDELK+ +GKWMIDIDYY +QQIHPVVSRLCASI+GTSP RLADCLGLD SKFQS+ S
Sbjct: 1242 RHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRS 1301

Query: 1297 ETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPET 1356
            E +++D S SLL A  DEERYRGCE LILSCPSC  TFDCP + +S+  S++EK ++ + 
Sbjct: 1302 EAINNDFSISLLSA--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQV 1359

Query: 1357 E--YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTT 1414
            E   NFW+ LRCPKCPEE + GR+SP +IANQVKRQADGF+SMYYKG MMCDDETCK+TT
Sbjct: 1360 EESNNFWQRLRCPKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMMCDDETCKHTT 1419

Query: 1415 CSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA 1474
             SLNLR+IGD+ERGTVCPNYPRCNGRLVRKYTEADLYKQL+YFCH+LDT R IEKME+S 
Sbjct: 1420 NSLNLRVIGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTVRCIEKMEVST 1479

Query: 1475 KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            +IP+EKEL +IRP+V LAAST Q+IR+RCAYGWV+L+D+ ++V
Sbjct: 1480 RIPIEKELARIRPLVNLAASTTQKIRDRCAYGWVQLDDLTVTV 1522


>gi|449463959|ref|XP_004149697.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Cucumis
            sativus]
          Length = 1547

 Score = 2188 bits (5669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1088/1565 (69%), Positives = 1267/1565 (80%), Gaps = 68/1565 (4%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M DEQP  + RRRSRG+EA+AR  ALERLKA+R GGRRS ++ G+ +KLENPIYDT+ ED
Sbjct: 1    MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRS-EAGGFQVKLENPIYDTIPED 59

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD-DESLDGQRSIKKQRI 119
            EYDALVA+RREE RGFIVDDDGLGYGDEG+EEDWS AG+  S + D  LD  +  K  + 
Sbjct: 60   EYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSDESDGELDKPKKRKVVKK 119

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKE--SESVIDE 177
            E + KK ++        SLTAAAAMMGKQ+LS+M TS+   K  +D+K K    +S++D+
Sbjct: 120  ETQPKKPSSS-------SLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLGCDSIVDD 172

Query: 178  VLAEFAPDEADRERRRRSVSSNI---KSFVSVNSVKTN------------SQLVTNSTNS 222
            V+AEFAPDE DRERRR+     I   ++  SV +VK+             S  + ++ N 
Sbjct: 173  VIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGESDFIKDAENG 232

Query: 223  VKE------NSDL--INNFVQIQNCDVVEESKELKWESDNS-----------TELTKRD- 262
              E      NSDL  +   V++Q      E+KE   +  NS             L K D 
Sbjct: 233  NSETTRVVTNSDLESVRGGVEVQGNG---ETKEFDSKDLNSQINLDPVEQLPNSLIKEDV 289

Query: 263  --NFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGL 320
              + + +K + K E     +    LNAKIS E+DP LSATA W+ V        EG   +
Sbjct: 290  SGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQAVRS------EGSGSV 343

Query: 321  NC------QESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVK 374
            N       ++SEF+ D DGSLPFYI+DAHE+L GANMGT+YLFGKVKAG T HSCCVVVK
Sbjct: 344  NSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVK 403

Query: 375  NMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN 434
            NMQRC+YAIP+     +DE+++L+KDAEES++SP   R KLQ+V  GLK E+A QLL+LN
Sbjct: 404  NMQRCIYAIPSASFLHSDEMLELQKDAEESQLSPADLRAKLQEVTAGLKNEMAKQLLDLN 463

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALE 494
            VS + ++PVKR+YAF + +IPAGENYV+KINYPFK PPLPADLKGE FC+LLGTH SALE
Sbjct: 464  VSTFSMTPVKRKYAFERQDIPAGENYVIKINYPFKHPPLPADLKGELFCALLGTHRSALE 523

Query: 495  LFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            L L+KRK+KGPSWLSISKFSS PA QRVSWCK+E+ VDSPKD++ S+SS    E+PP+ V
Sbjct: 524  LLLIKRKIKGPSWLSISKFSSRPASQRVSWCKFEVIVDSPKDVQTSTSSSKNLEIPPMIV 583

Query: 555  TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            TAIN+KT+ N+RQ VNEIVSASV+CC +AKID PMLA+EWKKPGML HFTV+RKLDGGIF
Sbjct: 584  TAINIKTIINERQSVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTVIRKLDGGIF 643

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            PMGF KE+TDRNSKAGSNVL CE +ERALLNRLMIEL+KLDSDVLVGHNISGFDLDVLLH
Sbjct: 644  PMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLH 703

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
            RAQ CRVPSSMWSKIGRLKRS MPKL KG  IFGSGASPG+MSCIAGRLLCDT+L SRDL
Sbjct: 704  RAQFCRVPSSMWSKIGRLKRSVMPKLGKGGNIFGSGASPGLMSCIAGRLLCDTYLSSRDL 763

Query: 735  LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLS 794
            L+E+SYSLT+LAKTQLNKDRKEV  H++ KM+Q  ESLM LIEYGETDAWLS+ELMFHLS
Sbjct: 764  LKEISYSLTELAKTQLNKDRKEVTSHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLS 823

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK-FTYVKETKMAKQR 853
            VLPLTRQLTNISGNLWG++LQGARAQRVEYLLLHAF AKKYIVPDK  +YVK+ K+ K+R
Sbjct: 824  VLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKDKKIVKKR 883

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
            +NHG E++NV++   +D N   +  + D  KGK+GP+Y GGLVLEPK+GLYDKY+LLLDF
Sbjct: 884  TNHGSEEKNVDQFDLDDGNV--EAPNTDSGKGKKGPSYLGGLVLEPKRGLYDKYVLLLDF 941

Query: 914  NSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
            NSLYPSIIQEYNICFTTVERSPDG++P LPSS+ TGVLPELLKNLVQRRRMVK+WMK AS
Sbjct: 942  NSLYPSIIQEYNICFTTVERSPDGVIPPLPSSRVTGVLPELLKNLVQRRRMVKSWMKNAS 1001

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
            GLK+QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT QGREIL+STVDLV+NNL
Sbjct: 1002 GLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNL 1061

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            +LEVIYGDTDSIMIHSG+DD+ K KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK
Sbjct: 1062 SLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1121

Query: 1094 YAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNS 1153
            YAAVK+QFKDGMPYEVIERKGLDMVRRDWSLLSKE+GDFCL+QILS  SCEDVVESIH+S
Sbjct: 1122 YAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVVESIHDS 1181

Query: 1154 LMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDT 1213
            LMK+QEDMR GQVALEKY+ITKTLTKPPEAYPDA+NQPHVQVA RLKQ GY+TGCS GDT
Sbjct: 1182 LMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYTTGCSVGDT 1241

Query: 1214 VPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE 1273
            +PYIICCEQ ++SG S GIAQRARHPDELKK DGKWMIDI+YY SQQIHPVVSRLCASI+
Sbjct: 1242 IPYIICCEQESTSGGSTGIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQ 1301

Query: 1274 GTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSST 1333
            GTSPERLADCLGLD SKFQ++  E   SD S+SLL +V DEERY+GC PL  +CPSCS T
Sbjct: 1302 GTSPERLADCLGLDSSKFQNRSIEVSRSDISTSLLCSVNDEERYQGCTPLTFTCPSCSGT 1361

Query: 1334 FDCPAVCSSICMSVSEKPSK--PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
            F+CP + SSI  S   K  +   E    FW  LRCPKCP+E  AGRI+PGMIANQVKRQA
Sbjct: 1362 FNCPPIFSSIYKSAEGKQERLVDEPTTKFWNNLRCPKCPDEANAGRITPGMIANQVKRQA 1421

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
            D F+SMYY GLMMCDDETCKY T ++NLR++GD+E+GT+CPNYP CNG LVRKYTEADLY
Sbjct: 1422 DRFISMYYNGLMMCDDETCKYATRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLY 1481

Query: 1452 KQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLN 1511
            KQL+YF H+LDT+R +EK+E+ A++ LEKE+  IRPVV LAA+T+Q IR+R AYGWV+L 
Sbjct: 1482 KQLSYFSHILDTERCMEKLEVHARVTLEKEMASIRPVVELAATTIQSIRDRSAYGWVQLQ 1541

Query: 1512 DIAIS 1516
            +  ++
Sbjct: 1542 NFVVT 1546


>gi|380710181|gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]
          Length = 1561

 Score = 2092 bits (5419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1057/1582 (66%), Positives = 1252/1582 (79%), Gaps = 88/1582 (5%)

Query: 1    MKDEQ-PVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAE 59
            M DEQ P V GRR SR      RAEALER+KALR GGRRS ++ G  +K++ PIYD V +
Sbjct: 1    MSDEQQPTVEGRRSSRKTSGGKRAEALERIKALRTGGRRSTENGGLQVKIDEPIYDVVED 60

Query: 60   DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSS--SDDESLDGQRSIKKQ 117
            DEY+ +VA+RRE ARGFIVDDDGLGYGDEGQEEDWSVAG+ SS  S+DE+       ++ 
Sbjct: 61   DEYNDIVAKRREAARGFIVDDDGLGYGDEGQEEDWSVAGVLSSEGSEDEN-------ERP 113

Query: 118  RIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDE 177
            + +K+  ++  Q  +KP+ +LTAAAA+MGKQR+S++ TS+ +FK+    +    +S++D+
Sbjct: 114  KNKKKTSEKKQQITKKPSAALTAAAALMGKQRISSLFTSS-VFKRDDKTRNLSCDSIVDD 172

Query: 178  VLAEFAPDEADR-----------ERRRRSVSS----------------------NIKSFV 204
            V+AEFAPDEADR           +  R SV++                       +K   
Sbjct: 173  VIAEFAPDEADRERRRRGNSNSLQASRSSVANPNLLNVKTEKLGAGKVDLMTRQEVKRVT 232

Query: 205  SVNSVKTNSQLVTNSTNS-----VKENSDLINNFVQ-IQNCDVV--EESKELKWESDNST 256
            + N    +  L   ST+      +K ++   NN  + IQ+ +V+  E   E   +SDN +
Sbjct: 233  AQNGESISGGLPEISTDEGTGGLLKISTGEGNNSARNIQSSEVLDAEVEGEKAVKSDNLS 292

Query: 257  ELTKRD-----NFVEVKEKVKDEVNEDVKECK--KLNAKISTEKDPLLSATAGWKEVSGG 309
             +  RD     N  EVK        E + E K   LNAKIS  KDP LSATA W+ +   
Sbjct: 293  TVGIRDGDTVVNCAEVKL-------EPLVESKVFALNAKISEGKDPGLSATAEWQALR-- 343

Query: 310  NMVLDEGKSGLNCQESE-----------FEVDDDGSLPFYILDAHEQLSGANMGTLYLFG 358
                + G   LNC ESE           FE+D DGSLPF+ILDAHE+L G N G +YLFG
Sbjct: 344  ----NAGSGILNCNESEAKLVNTEEKTDFELDSDGSLPFFILDAHEELYGTNAGNIYLFG 399

Query: 359  KVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDV 418
            KVKAG T+HSCC+VVKNMQRCVYA+PNG +F  D I KL +D EES+ISP AF  +L ++
Sbjct: 400  KVKAGGTYHSCCIVVKNMQRCVYAVPNGSVFCGDTISKLSRDVEESQISPSAFLSQLHEM 459

Query: 419  ALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK 478
            A GLK E  N LL  N+S++ ++PVKR YAF ++++P GEN+VLKINYPFKDPPLP+DL+
Sbjct: 460  ASGLKAECRNYLLEHNISSFSMAPVKRNYAFERSDVPRGENFVLKINYPFKDPPLPSDLR 519

Query: 479  GENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR 538
            GENF +LLGTHSSA+ELFL+KRK+KGPSWLSISKFSSCP PQRVSWCK+E+ VDSPKDI+
Sbjct: 520  GENFSALLGTHSSAMELFLIKRKIKGPSWLSISKFSSCPIPQRVSWCKFEVIVDSPKDIK 579

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
            +S+SSK+VAE+PPV VTAINLKT+ N++Q++NEIVSASV+CCH AKID PML SEW KPG
Sbjct: 580  ISTSSKNVAEIPPVVVTAINLKTIINQKQNINEIVSASVICCHSAKIDAPMLTSEWTKPG 639

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
            MLSHFTVVRKL+GGIFPMGF KEA +RN+KAGSNV+  ESSERALLNRLMIEL+KL+SDV
Sbjct: 640  MLSHFTVVRKLEGGIFPMGFTKEAAERNTKAGSNVISFESSERALLNRLMIELHKLESDV 699

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            L+GHNISGFDLDVLLHR Q C+VPSSMWSKIGRLKRS MPKL KG T+FGSGASPGIMSC
Sbjct: 700  LIGHNISGFDLDVLLHRVQACKVPSSMWSKIGRLKRSVMPKLTKGSTLFGSGASPGIMSC 759

Query: 719  IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEY 778
            I+GRLLCDT+L SR+LL+EVSYSLTQL K QLNKDRKE+ PHDV +MFQ  +SL+ELIE 
Sbjct: 760  ISGRLLCDTYLSSRELLKEVSYSLTQLVKNQLNKDRKEISPHDVPQMFQAADSLLELIEC 819

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
            GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF AKK+IVP
Sbjct: 820  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKFIVP 879

Query: 839  DKF-TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            DKF ++ +E K+ K++ N G E +  E +  +D N +      +H K K+GP+Y+GGLVL
Sbjct: 880  DKFSSHAREAKITKRKLNQGDEGKETEPIDADDPNIEGGILDINHGKAKKGPSYSGGLVL 939

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKN 957
            EPK+GLYDKYILLLDFNSLYPSIIQEYNICFTTVE S DG VPHLPSSK TG+LPELLKN
Sbjct: 940  EPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVESSLDGSVPHLPSSKRTGLLPELLKN 999

Query: 958  LVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFSNSRFYAK LAELIT Q
Sbjct: 1000 LVERRRMVKSWLKTASGLKAQQFDIQQQALKLTANSMYGCLGFSNSRFYAKSLAELITSQ 1059

Query: 1018 GREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEI 1077
            GREIL+STVDLVQN LNLEVIYGDTDSIMI+SG+DDI K+KAIA KVIQEVNKKY+CLEI
Sbjct: 1060 GREILQSTVDLVQNLLNLEVIYGDTDSIMIYSGLDDIGKSKAIAAKVIQEVNKKYRCLEI 1119

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            DLDGLYKRMLLLKKKKYAAVKVQFKDG PYEVIE+KGLDMVRRDWSLLSKE+GDFCLSQI
Sbjct: 1120 DLDGLYKRMLLLKKKKYAAVKVQFKDGKPYEVIEKKGLDMVRRDWSLLSKELGDFCLSQI 1179

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            LS  SCEDV+ESIHN+LMKVQE MR+GQ+ LEKYVITK+LTKPPEAYPDAK+QPHV+VAL
Sbjct: 1180 LSGGSCEDVIESIHNALMKVQEQMRTGQIELEKYVITKSLTKPPEAYPDAKSQPHVEVAL 1239

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            RLK+SGY TGCSAGDTVPY+ICCEQG  S +SVGIAQRARHPDELK+ +G W++DIDYY 
Sbjct: 1240 RLKKSGYVTGCSAGDTVPYVICCEQGNGSTTSVGIAQRARHPDELKRDNGNWIVDIDYYL 1299

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERY 1317
            +QQIHPV+SRLCASI+GTSP RLADCLGLD SKFQ+K SE ++ DPS++LL    DEER+
Sbjct: 1300 AQQIHPVISRLCASIQGTSPARLADCLGLDSSKFQNKSSEAVNDDPSNALLCVADDEERF 1359

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK---PETEYNFWRTLRCPKCPEEVE 1374
            RGCEPL L+CPSCS +F+C  + SSIC S+ + P+     E+    W    CPKCPEE E
Sbjct: 1360 RGCEPLTLTCPSCSCSFECAPIFSSICSSIRQNPADLQVGESASKVWERFSCPKCPEESE 1419

Query: 1375 AGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNY 1434
             G IS  +IANQVKRQ +GF+S YYKG+MMCDDETC YTT SLNLR+IGD+ERGTVCPNY
Sbjct: 1420 -GNISSALIANQVKRQVEGFISTYYKGVMMCDDETCNYTTRSLNLRVIGDSERGTVCPNY 1478

Query: 1435 PRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAAS 1494
            PRCNG L+R+YTEADLYKQL YFC +LDT R IEK+E + ++ +EKEL +IRPVV  AAS
Sbjct: 1479 PRCNGHLLRQYTEADLYKQLAYFCFVLDTVRCIEKVESNMRLQVEKELVRIRPVVEAAAS 1538

Query: 1495 TVQRIRERCAYGWVKLNDIAIS 1516
            TV++ R+RCAY WV+L D+ +S
Sbjct: 1539 TVEKFRDRCAYSWVQLKDLIVS 1560


>gi|356496908|ref|XP_003517307.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Glycine max]
          Length = 1512

 Score = 2058 bits (5333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1046/1539 (67%), Positives = 1231/1539 (79%), Gaps = 49/1539 (3%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D++PV +GRRR RG EA+ R++ALERLKA   GGRRS D+ G  I+LENP+YDTV ED
Sbjct: 1    MADDEPV-SGRRRPRGPEATERSKALERLKARIHGGRRS-DATGPQIRLENPVYDTVPED 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            EY+ALVA+RRE+AR FIVDD+GLGYGDEG+EEDWS AG   SS +   + +R  K++++E
Sbjct: 59   EYNALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSSGESEDESERP-KRKKVE 117

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            K+     +   ++P+ SL+AAAAMMG QRLS+M TS+ +FKKS+D+K   SES++D+V+A
Sbjct: 118  KK-----DPQPKRPSSSLSAAAAMMGGQRLSSMFTSS-VFKKSRDDKA--SESIVDDVIA 169

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCD 240
            EFA DE DR RR+R+  +      S +S  TN  L  N+T   K + DLI       N +
Sbjct: 170  EFAADETDRLRRKRANVN------SSSSSVTNDALRINNTVRDKPSVDLIGASSLPANGN 223

Query: 241  VVEESKELKWESDNSTELTKRDNFVEVKEK--VKDEVNEDVKECKKLNAKI--STEKDPL 296
             V   K +  +  +S    K +   E+++   V  E N    E   LNAK+    E+DP 
Sbjct: 224  AVS-VKVVDSDGSDSGFEQKSEAVSEIEDLACVSSE-NGQAPEVFTLNAKVKEEDEEDPS 281

Query: 297  LSATAGWKEV-SGGNMVLDEGKSGL-NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTL 354
            LSATAGWKEV SG   V  + K  L N Q SE +++ DGS  FYILDA+E+  G N GTL
Sbjct: 282  LSATAGWKEVMSGAGGVDADSKDALQNQQHSELDLEKDGSFFFYILDAYEEFYGENRGTL 341

Query: 355  YLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKK 414
            YLFGKVK G  + SCC++VKNMQRC+YA+P+  L +T+E+M LE+D +ESRIS   F KK
Sbjct: 342  YLFGKVKTGDLYQSCCIIVKNMQRCIYAVPSLSLHRTEEMMSLERDVQESRISSADFFKK 401

Query: 415  LQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP 474
            LQD    +K EIA  L+NL VSN+ ++PVKR+YAF ++EIPAGENYV+KINY FKDP LP
Sbjct: 402  LQDAVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPAGENYVVKINYSFKDPVLP 461

Query: 475  ADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSP 534
             DLKGE+FC+LLGT  SALELFL+KRK+KGPSWL +S FS   A +RVSWCK+E+TVDSP
Sbjct: 462  VDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSNFSPSSASRRVSWCKFEVTVDSP 521

Query: 535  KDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEW 594
            K I  +S+ K  +++PPV V AINLKT+ N++Q++NEIVSASVVCC+  KIDTPM+ASEW
Sbjct: 522  KQI--NSAPKITSKIPPVVVAAINLKTIINEKQNINEIVSASVVCCNMVKIDTPMMASEW 579

Query: 595  KKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKL 654
            ++P  L+ FTVVRKLDG IFPMGFNKE TDRN + GSN+LC ESSERALLNRLM+EL+KL
Sbjct: 580  RRPERLTRFTVVRKLDGSIFPMGFNKEVTDRNLQVGSNILCAESSERALLNRLMLELHKL 639

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            DSDVLVGHNISGFDLDVLLHR+Q C+V SSMWSK+GRL RS MPKLR+ + +FGSGA PG
Sbjct: 640  DSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLRRSK-VFGSGADPG 698

Query: 715  IMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME 774
            IMSCIAGRLLCDT+LCSRDLL+EVSYSLT LAK+ LNK R EV PH+V KMFQT ESLM+
Sbjct: 699  IMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKIRTEVAPHEVPKMFQTAESLMK 758

Query: 775  LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKK 834
            LIEYGETDAWLSMELMF+LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH F A K
Sbjct: 759  LIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMK 818

Query: 835  YIVPDKFTY----VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
            ++VPDKF+Y     KETK+ K+R  H VED N +   + DAN DND S  D++K K+GP+
Sbjct: 819  FMVPDKFSYHAKETKETKLMKRRLTHDVEDNNFDAYID-DANHDNDASEADNKKSKKGPS 877

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGV 950
            YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS D   P LPSSKTTGV
Sbjct: 878  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDESFPRLPSSKTTGV 937

Query: 951  LPELLKNLVQRRRMVKTWMKTASG-------LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
            LPE+LKNLV RR+MVK+W+K           +++QQLDIQQQALKLTANSMYGCLGFSNS
Sbjct: 938  LPEVLKNLVDRRKMVKSWIKNEKNKNEKTDPIRVQQLDIQQQALKLTANSMYGCLGFSNS 997

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RFYAKPLAELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI+SG+D+I +A  IA +
Sbjct: 998  RFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDEIEEANKIAVR 1057

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
            VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK+ +KDG PYE IERKGLD+VRRDWS
Sbjct: 1058 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLYKDGTPYEAIERKGLDIVRRDWS 1117

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
            +L+KE+GDFCL+QILS  SCEDVVESIHNSLMKVQE+MR+GQVALEKYVITKTLTKPPEA
Sbjct: 1118 ILAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEA 1177

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            YPDAKNQPHV VA RLKQ GYS+GCS GDT+PYIIC EQG S GS+ GIAQRARHPDELK
Sbjct: 1178 YPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSPGSAAGIAQRARHPDELK 1237

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDP 1303
            +  G W+IDIDYY SQQIHPVVSRLCA I+GTSPERLADCLGLD SKF  K SE ++ D 
Sbjct: 1238 RDQGTWLIDIDYYLSQQIHPVVSRLCAPIQGTSPERLADCLGLDSSKFHHKSSEALNDDS 1297

Query: 1304 SSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKP-----SKPETEY 1358
            +S L F   DEERYRGCEPL+LSCPSCS TFDCP V  SIC+  SE+      +  E EY
Sbjct: 1298 ASPLSFVADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLGSERQRPTSVAPEEAEY 1357

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
            NFWR L CPKCP+     +ISP MIANQVKRQA+ F+ MYY+GL++CDDETCK+TT S++
Sbjct: 1358 NFWRKLCCPKCPDV----KISPVMIANQVKRQAERFILMYYRGLLVCDDETCKHTTRSIS 1413

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPL 1478
            LRL+GD+ERGTVCPNYPRCNGRLVRKYTEADLYKQL+YFCH+ DT   IEKME  ++IP+
Sbjct: 1414 LRLVGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRIPI 1473

Query: 1479 EKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            EKEL KIR V+  AAST Q IR+RCA+GWVKL ++ ISV
Sbjct: 1474 EKELIKIRAVIKSAASTAQEIRDRCAFGWVKLENLVISV 1512


>gi|224096742|ref|XP_002310719.1| predicted protein [Populus trichocarpa]
 gi|222853622|gb|EEE91169.1| predicted protein [Populus trichocarpa]
          Length = 1312

 Score = 2027 bits (5251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1009/1296 (77%), Positives = 1123/1296 (86%), Gaps = 41/1296 (3%)

Query: 260  KRDNFVEVKEKVKDEVNEDVKE-------------------CKKLNAKIS-TEKDPLLSA 299
            K++  VEVKEK +D+++  VKE                    + LNAKIS  E+DP LSA
Sbjct: 20   KKEGIVEVKEKGEDKLSNLVKEEVVSVLEVKADEAVVKKDGGRTLNAKISDEERDPALSA 79

Query: 300  TAGWKEVSGGN---------MVLDEGKSGLNCQE-SEFEVDDDGSLPFYILDAHEQLSGA 349
            TAGWKEV  G           V++E KSG NC+E SEFE+D DGSLPFYILDAHE++ GA
Sbjct: 80   TAGWKEVMNGKNGGEAVGGAGVVEEVKSGANCEEQSEFELDGDGSLPFYILDAHEEIFGA 139

Query: 350  NMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM 409
            N GT+YLFGKVKAG+T+HSCCVVVKNM RCVYAIPN  +F+TDE+  LEK+ EESRIS  
Sbjct: 140  NRGTIYLFGKVKAGNTYHSCCVVVKNMHRCVYAIPNSSIFRTDEMSMLEKEVEESRISST 199

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
             F KKLQD+A  LK E+A+QLL+LNVS++ ++PVKRRYAF +++IPAGENY LKINYPFK
Sbjct: 200  DFHKKLQDMAYELKNEVASQLLSLNVSSFSMAPVKRRYAFDRSDIPAGENYALKINYPFK 259

Query: 470  DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEI 529
            +PPLPADLKGE FC+LLGTH SALELFLVKRKVKGPSWLS+SKF++CPA Q+VSWCK+EI
Sbjct: 260  EPPLPADLKGETFCALLGTHCSALELFLVKRKVKGPSWLSVSKFATCPASQKVSWCKFEI 319

Query: 530  TVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
             V+SPK+I+VSSSS    E+PPV V AINLKTV N++Q+VNEIVSASV+CCHKAKIDTPM
Sbjct: 320  IVESPKEIQVSSSSNSKLEIPPVVVAAINLKTVINEKQNVNEIVSASVICCHKAKIDTPM 379

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
            LASEWKKPGMLSHFTVVRKLDGGIFPMGF+KE TDRN+ AGSNVL  ESSERALLNRLMI
Sbjct: 380  LASEWKKPGMLSHFTVVRKLDGGIFPMGFSKEVTDRNTMAGSNVLAIESSERALLNRLMI 439

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS 709
             L+KLDSD LVGHNISGFDLDVLLHR Q CRVPSS WSKIGRLKRS MPKL KG  IFGS
Sbjct: 440  ALHKLDSDFLVGHNISGFDLDVLLHRTQACRVPSSTWSKIGRLKRSVMPKLTKGNAIFGS 499

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL 769
            GASPGIMSCIAGRLLCDT+L SRDLL+EVSYSLTQLAKT+LNKDRKE+ PHD+  MFQT 
Sbjct: 500  GASPGIMSCIAGRLLCDTYLASRDLLKEVSYSLTQLAKTRLNKDRKEIAPHDIPTMFQTS 559

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            +SL+EL+EYGETDAWLSMELMFHLS+LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA
Sbjct: 560  KSLIELVEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 619

Query: 830  FRAKKYIVPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            F AKKYIVPDK +  VKE K+ K+R N+G+EDRN +EL  + ANF+ND   +DH K K+G
Sbjct: 620  FHAKKYIVPDKMSSRVKEAKITKRRINNGIEDRNADELDTDAANFENDNQQSDHGKRKKG 679

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT 948
            PAYAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTVERS DGLVP LPSSKTT
Sbjct: 680  PAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSMDGLVPRLPSSKTT 739

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            GVLPELLKNLV+RRRMVK+WMK ASGLK+QQLDIQQQALKLTANSMYGCLGFSNSRFYAK
Sbjct: 740  GVLPELLKNLVERRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 799

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEV 1068
            PLAELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI+SG+DDI KAKAIAGKVIQEV
Sbjct: 800  PLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPKAKAIAGKVIQEV 859

Query: 1069 NKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            NKKY+CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG PYEVIERKGLDMVRRDWSLLSKE
Sbjct: 860  NKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDMVRRDWSLLSKE 919

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            +GDFCL+QILS  SCEDV+ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK
Sbjct: 920  LGDFCLAQILSGGSCEDVIESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 979

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ--GTSSGSSVGIAQRARHPDELKKGD 1246
            NQPH  VALRLKQSGY+ GCSAGDTVPYIICCEQ  G S+ S  GIAQRARHPDELK  D
Sbjct: 980  NQPHALVALRLKQSGYTAGCSAGDTVPYIICCEQGAGASAVSLTGIAQRARHPDELKCDD 1039

Query: 1247 GKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSS 1306
            GKW+IDI+YY SQQIHPVVSRLCASI+GTSPERLADCLGLD SKF+SK SE++    SSS
Sbjct: 1040 GKWIIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFRSKSSESVP---SSS 1096

Query: 1307 LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE---YNFWRT 1363
            LLFA  DEERY+ CEPLILSCPSCS TF CP V  SIC S+ EK   P+ E    NFW  
Sbjct: 1097 LLFAADDEERYQSCEPLILSCPSCSGTFHCPPVFISICTSILEKSKNPQIEESISNFWHR 1156

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
            L CPKCPEE + GRISP  +ANQVKRQA+GFVS YYKG+MMCDDETCK+TT SLNLRL+G
Sbjct: 1157 LCCPKCPEEGDLGRISPATMANQVKRQAEGFVSTYYKGVMMCDDETCKHTTRSLNLRLVG 1216

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA--KIPLEKE 1481
            D+ERGTVCP+YPRCNGRLVRKYTEADLYKQL+YFCHLL+T R IEK++  A  +I +EKE
Sbjct: 1217 DSERGTVCPSYPRCNGRLVRKYTEADLYKQLSYFCHLLETARCIEKLQADAGTRIQVEKE 1276

Query: 1482 LNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            L KIRP+V +A STV++IR+RCAYGWV+LN +A++V
Sbjct: 1277 LMKIRPMVDMALSTVKKIRDRCAYGWVQLNGLAVTV 1312


>gi|334188684|ref|NP_201511.2| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]
 gi|363548407|sp|Q9FHA3.2|DPOLA_ARATH RecName: Full=DNA polymerase alpha catalytic subunit
 gi|332010917|gb|AED98300.1| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]
          Length = 1524

 Score = 1920 bits (4973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 962/1538 (62%), Positives = 1197/1538 (77%), Gaps = 37/1538 (2%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M  +     GRRRSRGAEAS+R + LERLKA+R+GG RS    GY+I+L+ PI+DTV ++
Sbjct: 1    MSGDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDE 60

Query: 61   EYDALVARRREEARGFIVDDD---GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQ 117
            EYDALV+RRREEARGF+V+D     LGY DEG+EEDWS    P S+D+    G+ S + +
Sbjct: 61   EYDALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLK 120

Query: 118  RIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDE 177
            + +K  ++     V+K NP+L AAA + G+ RLS+M TS++ FKK K+    + E ++DE
Sbjct: 121  KKKKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILDE 179

Query: 178  VLAEFAPDEADRERRRR---------SVSSNIKSFVSVNSVKTNSQLVTNST---NSVKE 225
            ++A+  PDE+DR++  R         ++  N K F   +S+       T ST   +SV  
Sbjct: 180  IIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKESEPTPSTYEGDSVSM 239

Query: 226  NSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV-KEKVKDEVNEDVKECKK 284
            +++L+      ++  +  E+ EL       +++ K D   ++ K +VK E+   VKE   
Sbjct: 240  DNELMKEEDMKESEVIPSETMELL-----GSDIVKEDGSNKIRKTEVKSELG--VKEVFT 292

Query: 285  LNAKIST-EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQ-ESEFEVDDDGSLPFYILDA 342
            LNA I   EKD  LSATAGWKE  G     +    G + + ++EF++D DGSL F+ILDA
Sbjct: 293  LNATIDMKEKDSALSATAGWKEAMGKVGTENGALLGSSSEGKTEFDLDADGSLRFFILDA 352

Query: 343  HEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
            +E+  GA+MGT+YLFGKVK G T+ SCCVVVKN+QRCVYAIPN  +F + E++ LE++ +
Sbjct: 353  YEEAFGASMGTIYLFGKVKMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSHELIMLEQEVK 412

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVL 462
            +SR+SP +FR KL ++A  LK EIA +LL LNVSN+ ++PVKR YAF + ++PAGE YVL
Sbjct: 413  DSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERPDVPAGEQYVL 472

Query: 463  KINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV 522
            KINY FKD PLP DLKGE+F +LLG+H+SALE F++KRK+ GP WL IS FS+C   + V
Sbjct: 473  KINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISSFSTCSPSEGV 532

Query: 523  SWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHK 582
            SWCK+E+TV SPKDI +  S + V   PP  VTAINLKT+ N++Q+++EIVSASV+C H 
Sbjct: 533  SWCKFEVTVQSPKDITILVSEEKVVH-PPAVVTAINLKTIVNEKQNISEIVSASVLCFHN 591

Query: 583  AKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERA 642
            AKID PM A E K+ G+LSHFTVVR  +G  +P+G+ KE +DRNSK G NVL  E+SERA
Sbjct: 592  AKIDVPMPAPERKRSGILSHFTVVRNPEGTGYPIGWKKEVSDRNSKNGCNVLSIENSERA 651

Query: 643  LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK 702
            LLNRL +EL KLDSD+LVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL K
Sbjct: 652  LLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-K 710

Query: 703  GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
            G + +GSGA+PG+MSCIAGRLLCDT LCSRDLL+EVSYSLT L+KTQLN+DRKE+ P+D+
Sbjct: 711  GNSNYGSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDI 770

Query: 763  LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
             KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGARAQR+
Sbjct: 771  PKMFQSSKTLVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRI 830

Query: 823  EYLLLHAFRAKKYIVPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            EY LLH F +KK+I+PDK +  +KE K +K+R ++  EDRNV+EL + D   +ND S   
Sbjct: 831  EYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDEL-DADLTLENDPSKGS 889

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K+GPAYAGGLVLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTT+ RS DG VP 
Sbjct: 890  --KTKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRSEDG-VPR 946

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            LPSS+T G+LP+L+++LV  R+ VK  MK  +GLK  +LDI+QQALKLTANSMYGCLGFS
Sbjct: 947  LPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLKYWELDIRQQALKLTANSMYGCLGFS 1006

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            NSRFYAKPLAELIT QGR+IL+ TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI + KAI 
Sbjct: 1007 NSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIK 1066

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
             KVIQEVNKKY+CL+ID DG+YKRMLLL+KKKYAAVK+QFKDG P E IERKG+DMVRRD
Sbjct: 1067 SKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGKPCEDIERKGVDMVRRD 1126

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WSLLSKE+GD CLS+IL   SCEDVVE+IHN LMK++E+MR+GQVALEKYVITKTLTKPP
Sbjct: 1127 WSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKTLTKPP 1186

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT-SSGSSVGIAQRARHPD 1240
             AYPD+K+QPHVQVALR++Q GY  G +A DTVPYIIC EQG  SS SS GIA+RARHPD
Sbjct: 1187 AAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPD 1246

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
            E+K    +W++DIDYY +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++SK ++  S
Sbjct: 1247 EVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSKYRSKSNDATS 1306

Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN- 1359
            SDPS+SLLFA  DEERY+ CEPL L+CPSCS+ F+CP++ SS+C S+S+KP+ PETE + 
Sbjct: 1307 SDPSTSLLFATSDEERYKSCEPLALTCPSCSTAFNCPSIISSVCASISKKPATPETEESD 1366

Query: 1360 --FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSL 1417
              FW  L CPKC +E   G ISP MIANQVKRQ DGFVSMYYKG+M+C+DE+CK+TT S 
Sbjct: 1367 STFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVSMYYKGIMVCEDESCKHTTRSP 1426

Query: 1418 NLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
            N RL+G+ ERGTVCPNYP CNG L+RKYTEADLYKQL+YFCH+LDTQ  +EKM++  +I 
Sbjct: 1427 NFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCSLEKMDVGVRIQ 1486

Query: 1478 LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515
            +EK + KIRP V  AA+  +  R+RCAYGW++L DI I
Sbjct: 1487 VEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1524


>gi|85541645|sp|O48653.2|DPOLA_ORYSJ RecName: Full=DNA polymerase alpha catalytic subunit
          Length = 1534

 Score = 1915 bits (4961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 988/1541 (64%), Positives = 1209/1541 (78%), Gaps = 47/1541 (3%)

Query: 8    VAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALV 66
             +GRR R+RG+EA AR+ ALERL+A+R GG R+  +V   +++E PIYDTVAE++Y ALV
Sbjct: 10   ASGRRSRARGSEAVARSAALERLRAIRDGGARAAAAV--QVRIEAPIYDTVAEEDYAALV 67

Query: 67   ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
            ARRR++A  FIVDDDGLGY D+G+EEDW+   + SSSD+ S DG+    ++R + R + +
Sbjct: 68   ARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEGS-DGEDGAPRKRKQPRPQSK 126

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLAEF 182
                      SL+AAAAMMGKQRLS+M TS+ +F+K   ++ ++S    +S++D+V+AEF
Sbjct: 127  RPPQQSAAAASLSAAAAMMGKQRLSSMFTSS-VFRKPGSDRGRDSSLAADSIVDDVIAEF 185

Query: 183  APDEADRERRRRSVSSNIKS--------FVSVNSVKTNSQLVTNSTN--SVKENSDLINN 232
            APD+ DRE RRR V               +   +V  ++ +   S N     E SD  N+
Sbjct: 186  APDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTAMAFRSDNVFEAHEVSDHGND 245

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKIS 290
                   DV  E K L      S EL    N +E   + K E N +VK  +  +LNAKI 
Sbjct: 246  MDMELKPDVEMEPK-LDTPLGASAELANNSNSLE---EPKQEANGEVKIEKVHRLNAKIK 301

Query: 291  TEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSLPFYILD 341
            TE      + SATAGW ++ G G+    EG    N      + SEFE+ D G+LPFYILD
Sbjct: 302  TEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GALPFYILD 360

Query: 342  AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            A+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I +LEK++
Sbjct: 361  AYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEKNS 420

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
              S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P GE YV
Sbjct: 421  TTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYV 479

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            LKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA QR
Sbjct: 480  LKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQR 539

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            VSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH
Sbjct: 540  VSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCH 598

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
            + KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL  ESSER
Sbjct: 599  RVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESSER 658

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            ALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L 
Sbjct: 659  ALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLT 718

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
            KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD
Sbjct: 719  KGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHD 778

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            +  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RAQR
Sbjct: 779  IPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQR 838

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            VEYLLLHAF A+K+IVPDKF   KE    K++ N   E    +E    D + D++  H D
Sbjct: 839  VEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVD 895

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG VP+
Sbjct: 896  QGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPN 955

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFS
Sbjct: 956  LPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFS 1015

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            NSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK IA
Sbjct: 1016 NSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIA 1075

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            GKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRRD
Sbjct: 1076 GKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRD 1134

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+ITK+LTK P
Sbjct: 1135 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAP 1194

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            E YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S GIAQRARHP+E
Sbjct: 1195 EDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEE 1253

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
            LK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+ +E+ + 
Sbjct: 1254 LKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESDNQ 1313

Query: 1302 DPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP----ET 1356
            D SS LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S P    + 
Sbjct: 1314 DTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGNDA 1373

Query: 1357 EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
              NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T S
Sbjct: 1374 SINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHS 1433

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
            +NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK++  A++
Sbjct: 1434 VNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARL 1493

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1494 PFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1534


>gi|218189439|gb|EEC71866.1| hypothetical protein OsI_04575 [Oryza sativa Indica Group]
          Length = 1532

 Score = 1909 bits (4944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 987/1541 (64%), Positives = 1209/1541 (78%), Gaps = 49/1541 (3%)

Query: 8    VAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALV 66
             +GRR R+RG+EA AR+ ALERL+A+R GG R+  +V   +++E PIYDTVAE++Y ALV
Sbjct: 10   ASGRRSRARGSEAVARSAALERLRAIRDGGARAAAAV--QVRIEAPIYDTVAEEDYAALV 67

Query: 67   ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
            ARRR++A  FIVDDDGLGY D+G+EEDW+   + SSSD+ S DG+    ++R + R + +
Sbjct: 68   ARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEGS-DGEDGAPRKRKQPRPQSK 126

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLAEF 182
                      SL+AAAAMMGKQRLS+M TS+ +F+K   ++ ++S    +S++D+V+AEF
Sbjct: 127  RPPQQSAAAASLSAAAAMMGKQRLSSMFTSS-VFRKPGSDRGRDSSLAADSIVDDVIAEF 185

Query: 183  APDEADRERRRRSVSSNIKS--------FVSVNSVKTNSQLVTNSTNSVK--ENSDLINN 232
            APD+ DRE RRR V               +   +V  ++ +   S N ++  E SD  N+
Sbjct: 186  APDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTAMAFRSDNVLEAHEVSDHGND 245

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKIS 290
                   DV  E K L      S EL    N +E   + K E N +VK  +  +LNAKI 
Sbjct: 246  MDMELKPDVEMEPK-LDTPLGASAELANNSNSLE---EPKQEANGEVKIEKVHRLNAKIK 301

Query: 291  TEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSLPFYILD 341
            TE      + SATAGW ++ G G+    EG    N      + SEFE+ D G+LPFYILD
Sbjct: 302  TEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTSVDESSEFELKD-GALPFYILD 360

Query: 342  AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            A+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I +LEK++
Sbjct: 361  AYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEKNS 420

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
              S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P GE YV
Sbjct: 421  TTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYV 479

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            LKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA QR
Sbjct: 480  LKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFVACPATQR 539

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            VSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH
Sbjct: 540  VSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCH 598

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
              KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL  ESSER
Sbjct: 599  HVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESSER 658

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            ALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L 
Sbjct: 659  ALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLT 718

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
            KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD
Sbjct: 719  KGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHD 778

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            +  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR
Sbjct: 779  IPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 838

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            VEYLLLHAF A+K+IVPDKF   KE    K++ N   E    +E    D + D++  H D
Sbjct: 839  VEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVD 895

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG VP+
Sbjct: 896  QGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPN 955

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFS
Sbjct: 956  LPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFS 1015

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            NSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK IA
Sbjct: 1016 NSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIA 1075

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            GKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRRD
Sbjct: 1076 GKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRD 1134

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+ITK+LTK P
Sbjct: 1135 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAP 1194

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            E YPDAKNQPH  VALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S GIAQRARHP+E
Sbjct: 1195 EDYPDAKNQPH--VALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEE 1251

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
            LK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+ +E+ + 
Sbjct: 1252 LKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESDNQ 1311

Query: 1302 DPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP----ET 1356
            D SS+LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S P    + 
Sbjct: 1312 DTSSTLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGNDA 1371

Query: 1357 EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
              NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T S
Sbjct: 1372 SINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHS 1431

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
            +NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK++  A++
Sbjct: 1432 VNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARL 1491

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1492 PFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1532


>gi|56784778|dbj|BAD81999.1| putative DNA polymerase alpha catalytic subunit [Oryza sativa
            Japonica Group]
          Length = 1532

 Score = 1906 bits (4937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 986/1541 (63%), Positives = 1207/1541 (78%), Gaps = 49/1541 (3%)

Query: 8    VAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALV 66
             +GRR R+RG+EA AR+ ALERL+A+R GG R+  +V   +++E PIYDTVAE++Y ALV
Sbjct: 10   ASGRRSRARGSEAVARSAALERLRAIRDGGARAAAAV--QVRIEAPIYDTVAEEDYAALV 67

Query: 67   ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
            ARRR++A  FIVDDDGLGY D+G+EEDW+   + SSSD+ S DG+    ++R + R + +
Sbjct: 68   ARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEGS-DGEDGAPRKRKQPRPQSK 126

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLAEF 182
                      SL+AAAAMMGKQRLS+M TS+ +F+K   ++ ++S    +S++D+V+AEF
Sbjct: 127  RPPQQSAAAASLSAAAAMMGKQRLSSMFTSS-VFRKPGSDRGRDSSLAADSIVDDVIAEF 185

Query: 183  APDEADRERRRRSVSSNIKS--------FVSVNSVKTNSQLVTNSTN--SVKENSDLINN 232
            APD+ DRE RRR V               +   +V  ++ +   S N     E SD  N+
Sbjct: 186  APDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTAMAFRSDNVFEAHEVSDHGND 245

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKIS 290
                   DV  E K L      S EL    N +E   + K E N +VK  +  +LNAKI 
Sbjct: 246  MDMELKPDVEMEPK-LDTPLGASAELANNSNSLE---EPKQEANGEVKIEKVHRLNAKIK 301

Query: 291  TEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSLPFYILD 341
            TE      + SATAGW ++ G G+    EG    N      + SEFE+ D G+LPFYILD
Sbjct: 302  TEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GALPFYILD 360

Query: 342  AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            A+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I +LEK++
Sbjct: 361  AYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEKNS 420

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
              S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P GE YV
Sbjct: 421  TTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYV 479

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            LKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA QR
Sbjct: 480  LKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQR 539

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            VSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH
Sbjct: 540  VSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCH 598

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
            + KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL  ESSER
Sbjct: 599  RVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESSER 658

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            ALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L 
Sbjct: 659  ALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLT 718

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
            KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD
Sbjct: 719  KGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHD 778

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            +  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RAQR
Sbjct: 779  IPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQR 838

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            VEYLLLHAF A+K+IVPDKF   KE    K++ N   E    +E    D + D++  H D
Sbjct: 839  VEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVD 895

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG VP+
Sbjct: 896  QGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPN 955

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFS
Sbjct: 956  LPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFS 1015

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            NSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK IA
Sbjct: 1016 NSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIA 1075

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            GKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRRD
Sbjct: 1076 GKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRD 1134

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+ITK+LTK P
Sbjct: 1135 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAP 1194

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            E YPDAKNQPH  VALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S GIAQRARHP+E
Sbjct: 1195 EDYPDAKNQPH--VALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEE 1251

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
            LK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+ +E+ + 
Sbjct: 1252 LKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESDNQ 1311

Query: 1302 DPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP----ET 1356
            D SS LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S P    + 
Sbjct: 1312 DTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGNDA 1371

Query: 1357 EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
              NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T S
Sbjct: 1372 SINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHS 1431

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
            +NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK++  A++
Sbjct: 1432 VNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARL 1491

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1492 PFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1532


>gi|242059369|ref|XP_002458830.1| hypothetical protein SORBIDRAFT_03g041040 [Sorghum bicolor]
 gi|241930805|gb|EES03950.1| hypothetical protein SORBIDRAFT_03g041040 [Sorghum bicolor]
          Length = 1541

 Score = 1897 bits (4914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 956/1533 (62%), Positives = 1198/1533 (78%), Gaps = 43/1533 (2%)

Query: 16   GAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
            GAEAS RA  L++L+A+R G  R+ D +   +K++ PIYDTV E+EY+ LVARR++EA  
Sbjct: 21   GAEASGRAARLQQLRAVRNGEIRASDVI--QVKVDAPIYDTVPEEEYNVLVARRKKEAGE 78

Query: 76   FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
            FI+DDDGLGY D+G+EEDWS   LPSSSD+ S D   + +K++  +  + +         
Sbjct: 79   FIIDDDGLGYVDDGREEDWSHRALPSSSDEGSDDEDGAPRKRKQPRPPQAKRQPQQSAKA 138

Query: 136  PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKE----SESVIDEVLAEFAPDEADRER 191
             +  +AAA    Q++S++ TS+ +FK++  ++ K     ++S++D+++AEFAPDE DRE 
Sbjct: 139  AASFSAAAAKTGQQISSLFTSS-VFKRTGSDRTKSLALAADSIVDDIIAEFAPDENDREE 197

Query: 192  RRRSVSSN--------IKSFVSVNSVKTNSQLVTNSTNS-----VKENSDLINNFVQIQN 238
            RRR V             S+V    V  ++++V +   +     +K ++++  N  +I  
Sbjct: 198  RRRRVGRVSAPQPPPPTVSYVKPQKVIVDAEMVRSDNGNDMAVELKNDTEMETNLEEIPG 257

Query: 239  CDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKISTEK--- 293
                     L+    +S EL   +  +E   + K E N +VK  +  +LNAKI  E+   
Sbjct: 258  SSAELVVDNLEEIPGSSAELVFDNKSLE---EPKQEANGEVKVEKTHRLNAKIKAEESRN 314

Query: 294  DPLLSATAGWKEV--SGGNMVLDEGKS---GLNCQES-EFEVDDDGSLPFYILDAHEQLS 347
            + + SATAGW ++  +G N V +EG +     N  ES EFE+ D G+LPFYILDA+E+  
Sbjct: 315  NDVTSATAGWMKICGNGQNAVGEEGVTVDGNTNVDESSEFELKD-GALPFYILDAYEEPF 373

Query: 348  GANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRIS 407
            GAN GT+YLFGKV+ G   HSCCV+VKN+QRC+YAIPN  +F  D I  +E++   + + 
Sbjct: 374  GANSGTVYLFGKVEVGKRFHSCCVIVKNIQRCIYAIPNHSVFPRDSISGIERNPTSADLL 433

Query: 408  PMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYP 467
            P + R  L ++A GLK+EIA++L +LNVSN++++PVKR YAF + ++P GE YVLKINYP
Sbjct: 434  P-SLRATLHELASGLKSEIADKLSDLNVSNFVMTPVKRNYAFERTDLPNGEQYVLKINYP 492

Query: 468  FKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKY 527
            +KDP LPADL+GE+F +LLGT++SALELFL+KRKVKGPSWLS+SKF + P+ QRVSWCK+
Sbjct: 493  YKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSKFVTRPSTQRVSWCKF 552

Query: 528  EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
            E+TVD PKDI V ++S ++ EVP V V A+NLKT+ N++ +V+EIVSAS++CCH  KID+
Sbjct: 553  EVTVDCPKDISVLTTSTNL-EVPTVVVAAVNLKTIINEKHNVHEIVSASLICCHGVKIDS 611

Query: 588  PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647
            PM   +W+K GMLSHFTV+RKL+G IFP+G  K A+DRN +AGSNVL  ESSERALLNRL
Sbjct: 612  PMRPEDWQKRGMLSHFTVMRKLEGSIFPIGLAKGASDRNEQAGSNVLALESSERALLNRL 671

Query: 648  MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIF 707
            MIEL KLD DVLVGHNISGFDLDVLLHRAQ C+V SSMWSKIGRL+RS MP+L KG T++
Sbjct: 672  MIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVLSSMWSKIGRLRRSSMPRLTKGSTLY 731

Query: 708  GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
            GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K R+EV PHD+  MFQ
Sbjct: 732  GSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKVRREVSPHDIPLMFQ 791

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
            +   L++L+EYGETDAWLS+ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL
Sbjct: 792  SSTELLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 851

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
            H+F A+K+IVPDKF   KE    K++ N   E  N ++    D + D++  + D  K ++
Sbjct: 852  HSFHARKFIVPDKFARNKELNSTKRKMNADTEGANADD-GAADPSVDDEVHNGDQGKARK 910

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKT 947
            GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTVERS DG VP+LP+SK 
Sbjct: 911  GPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSSDGSVPNLPASKA 970

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            TGVLPELL++LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFSNSRFYA
Sbjct: 971  TGVLPELLRSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFYA 1030

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQE 1067
            KPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AKAIAGKVIQE
Sbjct: 1031 KPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQE 1090

Query: 1068 VNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSK 1127
            VNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRRDWSLLSK
Sbjct: 1091 VNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRDWSLLSK 1149

Query: 1128 EVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDA 1187
            ++GDFCL+QILS  +C+DVVESIH+SL++VQE MRSGQ+ LEKYVITK+LTK PE YPDA
Sbjct: 1150 DIGDFCLNQILSGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVITKSLTKAPEDYPDA 1209

Query: 1188 KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG 1247
            KNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + +  SVGIAQRARHP+ELK+   
Sbjct: 1210 KNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSDNTHSVGIAQRARHPEELKRDPD 1268

Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL 1307
            KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD +KFQS+ +E+ + D S+ L
Sbjct: 1269 KWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSAKFQSRVTESSNQDTSTML 1328

Query: 1308 LFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSI--CMSVSEKPSKPETEYNFWRTL 1364
            L  + DE ERYRGCEPL LSCPSCS TFDCP V S I    SVS+     +   NFWR +
Sbjct: 1329 LSVIDDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSATSVSDPNEGKDATANFWRHM 1388

Query: 1365 RCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGD 1424
            RCP+CP+  +  +ISP M+ANQ+KRQAD F+S+YYKGL MCDDE CKY+T S+NLR++GD
Sbjct: 1389 RCPRCPDNADESKISPPMLANQMKRQADNFISLYYKGLQMCDDEGCKYSTHSVNLRVMGD 1448

Query: 1425 AERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            +ERGT+CPNYP CNGRLVR+YTEADLY+QL+YFC++LD  R +EK++  A++P E+E   
Sbjct: 1449 SERGTICPNYPLCNGRLVRQYTEADLYRQLSYFCYVLDATRCLEKLDQKARLPFEREFVA 1508

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            +   + LA   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 1509 VGQTINLALQEIQKIRDRCAFGWVQLKDLAVSI 1541


>gi|357131369|ref|XP_003567311.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
            subunit-like [Brachypodium distachyon]
          Length = 1538

 Score = 1894 bits (4907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1550 (63%), Positives = 1213/1550 (78%), Gaps = 59/1550 (3%)

Query: 7    VVAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDAL 65
              +GRR R+RG EA  R+ ALERL+A+R GG R+  +    +K+E+PIYDTVAED+Y AL
Sbjct: 9    AASGRRTRTRGPEAVGRSAALERLRAIRSGGARA--AAAAQVKMEDPIYDTVAEDDYAAL 66

Query: 66   VARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
            VARRR++A  FI+DDDGLGY D+G+EEDW+   LPSSSD+ S DG+    ++R + R   
Sbjct: 67   VARRRKDAGAFIIDDDGLGYVDDGREEDWTHRALPSSSDEGS-DGEDGASRKRKQPRPP- 124

Query: 126  ENNQNVRKPNP-----SLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES---ESVIDE 177
               Q  R P       SL+AAAAMMGKQRLS+M TS+ +FKK   ++ K S   +S++D+
Sbjct: 125  ---QAKRPPQQSAAAASLSAAAAMMGKQRLSSMFTSS-VFKKPGSDRTKGSPAADSIVDD 180

Query: 178  VLAEFAPDEADRERRRRSVS---------SNIKSFVSVNSVKTNSQLVTNSTNSVKEN-- 226
            V+AEFAPD+ DRE RRR V          + +    +V +    ++L   S    + +  
Sbjct: 181  VIAEFAPDDNDREERRRRVGRICAPTPPPAPVAHIKAVKAAAVAAELGFRSDYGSEPDGV 240

Query: 227  SDLINNF-----VQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK- 280
            SD  N+       +++    VE   EL   SD+  EL    +  +  E++K E N +VK 
Sbjct: 241  SDHGNDMDVELKPEVELRSDVEAQPELVATSDSRAELA---DVNKSSEELKQEANGEVKI 297

Query: 281  -ECKKLNAKISTEKD---PLLSATAGWKEVSG--------GNMVLDEGKSGLNCQESEFE 328
             +  +LNAKI  E      + SATAGW ++ G        G + +D G + ++ + SEFE
Sbjct: 298  EKVHRLNAKIKAENSRNGDMSSATAGWMKICGEGENAGVEGGVAVD-GNTDVD-ESSEFE 355

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPL 388
            +  DG+LPFYILDA+E+  G N GTLYLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +
Sbjct: 356  L-KDGALPFYILDAYEEPFGVNSGTLYLFGKVEIGKRFHSCCVVVKNMQRCIYAIPSSSV 414

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
            F  D I ++E+++  S  S  + R  L ++A GLK EIA++L +LN+SN++++PVKR YA
Sbjct: 415  FPRDNISRIERNSTSSDAS-SSLRATLHELASGLKGEIADKLSDLNISNFVMTPVKRNYA 473

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            F + ++P GE YVLKINYP+KD  LPADL+GE+F +LLGT++SALELFL+KRK+KGPSWL
Sbjct: 474  FERTDLPNGEQYVLKINYPYKDTTLPADLRGEHFHALLGTNNSALELFLIKRKIKGPSWL 533

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQD 568
            SISKF +CP+ QRVSWCK+E+TVD PKDI V  +S  + EVPPV V A+NLKT+ N++ +
Sbjct: 534  SISKFGTCPSTQRVSWCKFEVTVDCPKDISVLMTSASL-EVPPVVVAAVNLKTIINEKHN 592

Query: 569  VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
            V+EIVSASV+CCH+AKID+PM + +W+K GMLSHFTV+RKL+G IFP+G  KEA+DRN K
Sbjct: 593  VHEIVSASVICCHRAKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLTKEASDRNQK 652

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AGSNVL  ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPSSMWSK
Sbjct: 653  AGSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSSMWSK 712

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            IGRL+RS MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLLREVSYSLTQLA+T
Sbjct: 713  IGRLRRSIMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLREVSYSLTQLAET 772

Query: 749  QLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
            QL KDR+EV PHD+  MFQ+  +L++L+EYGETDAWLS+ELMFHLSVLPLTRQLTNISGN
Sbjct: 773  QLKKDRREVSPHDIPPMFQSSGTLLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGN 832

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
            LWGKTLQGARAQRVEYLLLH+F AKK+IVPDKF   KE   AK++ +   E         
Sbjct: 833  LWGKTLQGARAQRVEYLLLHSFHAKKFIVPDKFARNKELNSAKRKISADTE-GANAADGA 891

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
             D + D++  H D  K ++GP+YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE+NICF
Sbjct: 892  ADPSIDDEVHHGDQGKARKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEFNICF 951

Query: 929  TTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALK 988
            TTVERS DG +P+LP+SK TGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALK
Sbjct: 952  TTVERSSDGNLPNLPTSKVTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALK 1011

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            LTANSMYGCLGFSNSRF+AKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH
Sbjct: 1012 LTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIH 1071

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
            +G+DDI++AKAIAGKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E
Sbjct: 1072 TGLDDISRAKAIAGKVIQEVNKKYRCLEIDLDGVYKRMLLLKKKKYAAIKVAL-DGSLRE 1130

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             IERKGLDMVRRDWSLLSKE+GDFCL+QILS  +C+DVVESIHNSL++VQE M+SGQ+ L
Sbjct: 1131 NIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGTCDDVVESIHNSLVQVQEQMKSGQIEL 1190

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
            EKY+ITK+LTK PE YPDAKNQPHVQVALRLKQ+G+S GCSAGDTVPYIIC +Q + +  
Sbjct: 1191 EKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGFS-GCSAGDTVPYIICSQQDSDNTH 1249

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
            S GIAQRARHPDELK+   KWMIDIDYY SQQIHPVVSRLCASIEGTSP RLA+CLGLD 
Sbjct: 1250 SGGIAQRARHPDELKRDPNKWMIDIDYYLSQQIHPVVSRLCASIEGTSPARLAECLGLDS 1309

Query: 1289 SKFQSKPSETMSSDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSV 1347
            SKFQS+ + + + D SS LL  + DE ERYRGCEPL LSCPSCS TF+CP V SS+  S 
Sbjct: 1310 SKFQSRLTGSTNQDMSSMLLSVIDDENERYRGCEPLRLSCPSCSGTFECPPV-SSLIASP 1368

Query: 1348 SEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDD 1407
            S+     +   NFWR +RCP+CP++ +  RISP ++ANQ+KRQAD F++ YYKGL++CDD
Sbjct: 1369 SDANEGKDVNVNFWRRMRCPRCPDDSDECRISPAVLANQIKRQADNFINQYYKGLLICDD 1428

Query: 1408 ETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI 1467
            E CKY+T  +N R++GD+ERGT+CPNYPRCNGRLVR+YTEADLY+QL+YFC++LD  R +
Sbjct: 1429 EGCKYSTHIVNXRVMGDSERGTICPNYPRCNGRLVRQYTEADLYRQLSYFCYVLDATRCL 1488

Query: 1468 EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            EK++  +++P EKE   +     LA   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 1489 EKLDQKSRLPFEKEFVGLSQTTNLAFMEIQKIRDRCAFGWVQLTDLAVSI 1538


>gi|300681493|emb|CBH32589.1| DNA polymerase alpha catalytic subunit,putative,expressed [Triticum
            aestivum]
          Length = 1516

 Score = 1881 bits (4872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1538 (62%), Positives = 1196/1538 (77%), Gaps = 63/1538 (4%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
            AR+ ALERL+A+R GG RS  +V   +++E+PIYDTVAE++Y ALVARRR++A  FI+DD
Sbjct: 1    ARSAALERLRAIRGGGARSAAAV--QVRMEDPIYDTVAEEDYAALVARRRKDAGAFIIDD 58

Query: 81   DGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTA 140
            DGLGY D+G+EEDW+   LPSSSD+ S   + + +K++  +  + +          SL+A
Sbjct: 59   DGLGYVDDGREEDWTHRALPSSSDEGSGGEEGAPRKRKQPRPPQAKRPPQQSAAAASLSA 118

Query: 141  AAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLAEFAPDEADRERRRRSV 196
            A AM GK RLSAM TS+  FKK   ++ K S    +S++D+V+AEFAPDE DRE RRR V
Sbjct: 119  AGAMTGKDRLSAMFTSS-FFKKPGSDRTKGSSLAADSIVDDVIAEFAPDENDREERRRRV 177

Query: 197  ---SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV------------ 241
               S+   +   V  +K   Q   ++   V+ ++    + V     D+            
Sbjct: 178  GRVSAPTPTPAPVAQIKA-IQAAVHAEMEVRSDNGFEPDVVSDHGNDMEVELQPEVELKP 236

Query: 242  -VEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKI---STEKDP 295
             VE   +L+    +S EL   +   +  E++K E N +VK  +  +LNAKI    T    
Sbjct: 237  DVEMQPKLEAAPGSSPELVDEN---KSSEELKLEANGEVKIEKVHRLNAKIKAEGTRNGD 293

Query: 296  LLSATAGWKEVS--------------GGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILD 341
            +LSATAGW ++                GN  +DE         SEFE+ D G+LPFY+LD
Sbjct: 294  MLSATAGWMKICGEGENAGGEGEVSVNGNTDVDES--------SEFELKD-GALPFYVLD 344

Query: 342  AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            A+E+  G N GT+YLFGKV  G   HSCCVVVKNMQRC+YAIP+  +F  D I ++EK++
Sbjct: 345  AYEEPFGINSGTVYLFGKVVIGKRFHSCCVVVKNMQRCIYAIPSSSVFPRDTISRIEKNS 404

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
              S  SP + R  L +++ GLK E+A +L +LNVSN++++PVKR YAF + ++P GE YV
Sbjct: 405  TSSDASP-SLRATLHELSSGLKIEVAEKLSDLNVSNFVMTPVKRNYAFERTDVPIGEQYV 463

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            LKINYP+KDP +PADL+GE+F +LLGT++SALELFL+KRK+KGPSWLSISKF +CP+ QR
Sbjct: 464  LKINYPYKDPAVPADLRGEHFHALLGTNNSALELFLIKRKIKGPSWLSISKFVACPSTQR 523

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            VSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH
Sbjct: 524  VSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCH 582

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
            + KIDTPM + +W+K G +SHFTV+RKL+G IFP+G  KEA+DRN KAGSNVL  ESSER
Sbjct: 583  QVKIDTPMRSEDWQKRGTISHFTVMRKLEGSIFPIGLTKEASDRNQKAGSNVLALESSER 642

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            ALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPSSMWSKIGRL+RS MP+L 
Sbjct: 643  ALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSSMWSKIGRLRRSVMPRLT 702

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
            KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLLREVSYSLTQLA+TQL KDR+EV PHD
Sbjct: 703  KGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLREVSYSLTQLAETQLKKDRREVSPHD 762

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            +  MFQ+  +L++L+EYGETDAWLS+ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR
Sbjct: 763  IPPMFQSSGTLLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 822

Query: 822  VEYLLLHAFRAKKYIVPDKFTYV-KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            VEYLLLH+F AKK+I+PDKF    KE   AK++ N   E  N  +    D + D++  + 
Sbjct: 823  VEYLLLHSFHAKKFIIPDKFAARNKELNSAKRKLNADTEGGNAAD-GAADPSIDDEVHNG 881

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVP 940
            D  K ++GP+YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE+NICFTTVERS DG +P
Sbjct: 882  DQGKARKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEFNICFTTVERSSDGNLP 941

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
            +LP+SK TGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGF
Sbjct: 942  NLPNSKATGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGF 1001

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
            SNSRF+AKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMI++G+DDI+KAKAI
Sbjct: 1002 SNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAI 1061

Query: 1061 AGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
            AGKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRR
Sbjct: 1062 AGKVIQEVNKKYRCLEIDLDGVYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRR 1120

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DWS+LSKE+GDFCL+QILS  +C+DV+ESIHNSL++VQ  M+SGQ+ LEKY+ITK+LTK 
Sbjct: 1121 DWSMLSKEIGDFCLNQILSGGTCDDVIESIHNSLVQVQAQMKSGQIELEKYIITKSLTKA 1180

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
            PE YPDAKNQPHVQVALRLKQ+G+S GCSAGDTVPYIIC +Q + +  S GIAQRARHPD
Sbjct: 1181 PEDYPDAKNQPHVQVALRLKQNGFS-GCSAGDTVPYIICSQQDSDNTHSGGIAQRARHPD 1239

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
            ELK+   KWMIDI+YY SQQIHPVVSRLCASIEGTSP RLA+CLGLD SKFQS+   + +
Sbjct: 1240 ELKRDPNKWMIDIEYYLSQQIHPVVSRLCASIEGTSPARLAECLGLDSSKFQSRSIGSSN 1299

Query: 1301 SDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
             D S+ LL  + DE ERYRGCEPL LSCPSC++TF+CP V SS+  S+S+     +   N
Sbjct: 1300 EDTSTMLLSVIDDEDERYRGCEPLRLSCPSCTNTFECPPV-SSLIASLSDPNEGKDATVN 1358

Query: 1360 FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
            FWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F++ YYKGL+MCDDE CKY+T  +NL
Sbjct: 1359 FWRRMRCPRCPDDTDECRVSPAVLANQIKRQADNFINRYYKGLLMCDDEGCKYSTHIVNL 1418

Query: 1420 RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLE 1479
            R++GD+ERGT+CPNYP+CNGRLVR+YTEADLY+QL+YFC++LD  R ++K++   ++P E
Sbjct: 1419 RVMGDSERGTICPNYPQCNGRLVRQYTEADLYRQLSYFCYVLDATRCLDKLDQKMRLPFE 1478

Query: 1480 KELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            KE   +   ++ A   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 1479 KEFAVLNQTISSAFLEIQKIRDRCAFGWVQLTDLAVSI 1516


>gi|414879514|tpg|DAA56645.1| TPA: hypothetical protein ZEAMMB73_505723 [Zea mays]
          Length = 1528

 Score = 1867 bits (4836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 956/1553 (61%), Positives = 1188/1553 (76%), Gaps = 79/1553 (5%)

Query: 9    AGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            +GRR R+RGAEAS RA  L++L+A+R G  R+ D++   +K++ PIYDTV E+EY+ LVA
Sbjct: 11   SGRRTRTRGAEASGRAAVLQQLRAVRSGQIRASDAI--QVKVDAPIYDTVPEEEYNVLVA 68

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDD--ESLDGQRSIKKQRIEKRGKK 125
            RRR+EA  FI+DDDGLGY ++G+EEDWS   LPSSSD+  E  DG    +KQ    + K+
Sbjct: 69   RRRKEAGEFIIDDDGLGYVEDGREEDWSHRALPSSSDEGSEGEDGAPRKRKQTRPPQAKR 128

Query: 126  ENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKE----SESVIDEVLAE 181
            +  Q+ +    SL+AAAA  G+Q +S+M TS+ +FK    ++ K     ++S++D+V+AE
Sbjct: 129  QPQQSAKVA--SLSAAAAKTGQQ-ISSMFTSS-VFKGRGSDRAKNLALAADSIVDDVIAE 184

Query: 182  FAPDEADRERRRRSVSSNIK-------SFVSVNSVKTNSQLVTNSTNSVKENSDLINNFV 234
            FAPDE DRE RRR V+           S++    V  ++++V +      EN    N+ V
Sbjct: 185  FAPDENDREERRRRVARVCAPQPVPTVSYIKPQKVILDAEMVRS------ENE---NDMV 235

Query: 235  QIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEK- 293
             ++  +  E    L+    +S EL    +  E K++   EV   +++  +LNAKI  E+ 
Sbjct: 236  VVELKNDTEMETNLEEIPGSSAELVVNKSLEEPKQEDNGEVK--IEKAHRLNAKIKAEEC 293

Query: 294  --DPLLSATAGWKEVSGG--NMVLDEG---KSGLNCQES-EFEVDDDGSLPFYILDAHEQ 345
              + + SAT GW ++ G   N V +EG       N  ES EFE+ D G+LPFYILDA+E+
Sbjct: 294  RNNDVTSATEGWMKICGNGENAVGEEGVAVDGNTNVDESSEFELKD-GALPFYILDAYEE 352

Query: 346  LSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESR 405
              GAN GT+YLFGKV+ G   HSCCV+VKN+QRC+YAIPN  +F  D I  +E++     
Sbjct: 353  PFGANSGTVYLFGKVEVGKQFHSCCVIVKNIQRCIYAIPNRSVFPMDSISGIERNPTADL 412

Query: 406  ISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKIN 465
            +   + R  L ++A GLK+EIA++L +LNVSN+I++PVKR YAF + ++P GE YVLKIN
Sbjct: 413  LP--SLRATLHELASGLKSEIADKLSDLNVSNFIMTPVKRNYAFERTDLPNGEQYVLKIN 470

Query: 466  YPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            YP+KDP LPADL+GE+F +LLGT++SALELFL+KRKVKGPSWLS+SKF + P+ QRVSWC
Sbjct: 471  YPYKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSKFVTRPSTQRVSWC 530

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            K+E+TVD PKDI V ++S ++ EVP V V A+NLKT+ N++ +V+EIVSAS++CCH+ KI
Sbjct: 531  KFEVTVDCPKDISVLTTSTNL-EVPTVVVGAVNLKTIINEKHNVHEIVSASLICCHRVKI 589

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D+PM   +W+K GMLSHFTVVRKL+G IFP+G  KEA+DRN KAGSNVL  ESSERALLN
Sbjct: 590  DSPMRPEDWQKRGMLSHFTVVRKLEGSIFPIGLAKEASDRNQKAGSNVLALESSERALLN 649

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
            RLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPSSMWSKIGRL+RS MP+L KG T
Sbjct: 650  RLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSSMWSKIGRLRRSLMPRLTKGST 709

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            ++GSGASPGIMSC+AGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K RKEV PHD+  M
Sbjct: 710  LYGSGASPGIMSCVAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKVRKEVSPHDIPMM 769

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            FQ+   L++L+EYGETDAWLS+ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL
Sbjct: 770  FQSSGELLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 829

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            LLH+F A+K+I PDKF   KE    K++ N      N ++    D + D++  + D  K 
Sbjct: 830  LLHSFHARKFIAPDKFARNKELNSTKRKMNPDTGGANADD-GAADPSVDDEVHNGDQSKA 888

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSS 945
            ++GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQE+NICFTTVERS DG VP+LP+S
Sbjct: 889  RKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEFNICFTTVERSSDGSVPNLPAS 948

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
            K TGVLPELL++LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTAN           RF
Sbjct: 949  KVTGVLPELLRSLVERRRMVKSWLKTASGLKKQQFDIQQQALKLTAN-----------RF 997

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            YAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AKAIAGKVI
Sbjct: 998  YAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVI 1057

Query: 1066 QE----------------VNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
            QE                VNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E 
Sbjct: 1058 QEMCKLKKDGLTKNASIQVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLREN 1116

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            IERKGLDMVRRDWSLLSK++GDFCL QILS  +C+DVVESIH+SL++VQE MRSGQ+ LE
Sbjct: 1117 IERKGLDMVRRDWSLLSKDIGDFCLKQILSGGTCDDVVESIHSSLVQVQEQMRSGQIELE 1176

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            KYVITK+LTK PE YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + +  S
Sbjct: 1177 KYVITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSDNAHS 1235

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
            VGIAQRARHP+ELK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD +
Sbjct: 1236 VGIAQRARHPEELKRDPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSA 1295

Query: 1290 KFQSKPSETMSSDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSI----C 1344
            KFQ + +E+ + D S  LL  + DE ERYRGCEPL LSCPSCS TFDCP V S I     
Sbjct: 1296 KFQPRLTESSNQDTSMMLLSVIDDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSASA 1355

Query: 1345 MSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMM 1404
             SVS+     +   NFWR +RCP+C +     + SP M+ANQ+KRQAD F+S+YYKGL M
Sbjct: 1356 TSVSDPIEGKDATANFWRHMRCPRCLDNTVESKFSPSMLANQMKRQADNFISLYYKGLQM 1415

Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
            CDDE CKY+T S+NLR++GD+ERGTVCPNYPRCNGRLVR+Y E+DLY+QL+YFC++LD  
Sbjct: 1416 CDDEGCKYSTHSVNLRVMGDSERGTVCPNYPRCNGRLVRQYKESDLYRQLSYFCYVLDAT 1475

Query: 1465 RGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            R +EK++  A++P E+E   +   + LA   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 1476 RCLEKLDQKARLPFEREFVAVGQTIKLALLEIQKIRDRCAFGWVQLKDLAVSI 1528


>gi|222619596|gb|EEE55728.1| hypothetical protein OsJ_04212 [Oryza sativa Japonica Group]
          Length = 1523

 Score = 1858 bits (4814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 974/1543 (63%), Positives = 1190/1543 (77%), Gaps = 62/1543 (4%)

Query: 8    VAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALV 66
             +GRR R+RG+EA AR+ ALERL+A+R GG R+  +V   +++E PIYDTVAE++Y ALV
Sbjct: 10   ASGRRSRARGSEAVARSAALERLRAIRDGGARAAAAV--QVRIEAPIYDTVAEEDYAALV 67

Query: 67   ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDES--LDGQRSIKKQRIEKRGK 124
            ARRR++A  FIVDDDGLGY D+G+EEDW+   + SSSD+ S   DG     +        
Sbjct: 68   ARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEGSDGEDGAPREAEAAASAVEA 127

Query: 125  KENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLA 180
                Q+      SL+AAAAMMGKQRLS+M TS+ +F+K   ++ ++S    +S++D+V+A
Sbjct: 128  ARPQQSAAAA--SLSAAAAMMGKQRLSSMFTSS-VFRKPGSDRGRDSSLAADSIVDDVIA 184

Query: 181  EFAPDEADRERRRRSVSSNIKS--------FVSVNSVKTNSQLVTNSTN--SVKENSDLI 230
            EFAPD+ DRE RRR V               +   +V  ++ +   S N     E SD  
Sbjct: 185  EFAPDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTAMAFRSDNVFEAHEVSDHG 244

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAK 288
            N+       DV  E K L      S EL    N +E   + K E N +VK  +  +LNAK
Sbjct: 245  NDMDMELKPDVEMEPK-LDTPLGASAELANNSNSLE---EPKQEANGEVKIEKVHRLNAK 300

Query: 289  ISTEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSLPFYI 339
            I TE      + SATAGW ++ G G+    EG    N      + SEFE+ D G+LPFYI
Sbjct: 301  IKTEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GALPFYI 359

Query: 340  LDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            LDA+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I +LEK
Sbjct: 360  LDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEK 419

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            ++  S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P    
Sbjct: 420  NSTTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPKWG- 477

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
                      DP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA 
Sbjct: 478  ---------PDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPAT 528

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
            QRVSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+C
Sbjct: 529  QRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVIC 587

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
            CH+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL  ESS
Sbjct: 588  CHRVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESS 647

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+
Sbjct: 648  ERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPR 707

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV P
Sbjct: 708  LTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSP 767

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
            HD+  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RA
Sbjct: 768  HDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRA 827

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            QRVEYLLLHAF A+K+IVPDKF   KE    K++ N   E    +E    D + D++  H
Sbjct: 828  QRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHH 884

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLV 939
             D  K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG V
Sbjct: 885  VDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNV 944

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLG 999
            P+LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLG
Sbjct: 945  PNLPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLG 1004

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
            FSNSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK 
Sbjct: 1005 FSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKG 1064

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
            IAGKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVR
Sbjct: 1065 IAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVR 1123

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RDWSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+ITK+LTK
Sbjct: 1124 RDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTK 1183

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
             PE YPDAKNQPH  VALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S GIAQRARHP
Sbjct: 1184 APEDYPDAKNQPH--VALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHP 1240

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
            +ELK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+ +E+ 
Sbjct: 1241 EELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESD 1300

Query: 1300 SSDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP---- 1354
            + D SS LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S P    
Sbjct: 1301 NQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGN 1360

Query: 1355 ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTT 1414
            +   NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T
Sbjct: 1361 DASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYST 1420

Query: 1415 CSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA 1474
             S+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK++  A
Sbjct: 1421 HSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKA 1480

Query: 1475 KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            ++P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1481 RLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1523


>gi|414879513|tpg|DAA56644.1| TPA: hypothetical protein ZEAMMB73_505723 [Zea mays]
          Length = 1526

 Score = 1858 bits (4813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 954/1553 (61%), Positives = 1186/1553 (76%), Gaps = 81/1553 (5%)

Query: 9    AGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            +GRR R+RGAEAS RA  L++L+A+R G  R+ D++   +K++ PIYDTV E+EY+ LVA
Sbjct: 11   SGRRTRTRGAEASGRAAVLQQLRAVRSGQIRASDAI--QVKVDAPIYDTVPEEEYNVLVA 68

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDD--ESLDGQRSIKKQRIEKRGKK 125
            RRR+EA  FI+DDDGLGY ++G+EEDWS   LPSSSD+  E  DG    +KQ    + K+
Sbjct: 69   RRRKEAGEFIIDDDGLGYVEDGREEDWSHRALPSSSDEGSEGEDGAPRKRKQTRPPQAKR 128

Query: 126  ENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKE----SESVIDEVLAE 181
            +  Q+ +    SL+AAAA  G+Q +S+M TS+ +FK    ++ K     ++S++D+V+AE
Sbjct: 129  QPQQSAKVA--SLSAAAAKTGQQ-ISSMFTSS-VFKGRGSDRAKNLALAADSIVDDVIAE 184

Query: 182  FAPDEADRERRRRSVSSNIK-------SFVSVNSVKTNSQLVTNSTNSVKENSDLINNFV 234
            FAPDE DRE RRR V+           S++    V  ++++V +      EN    N+ V
Sbjct: 185  FAPDENDREERRRRVARVCAPQPVPTVSYIKPQKVILDAEMVRS------ENE---NDMV 235

Query: 235  QIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEK- 293
             ++  +  E    L+    +S EL    +  E K++   EV   +++  +LNAKI  E+ 
Sbjct: 236  VVELKNDTEMETNLEEIPGSSAELVVNKSLEEPKQEDNGEVK--IEKAHRLNAKIKAEEC 293

Query: 294  --DPLLSATAGWKEVSGG--NMVLDEG---KSGLNCQES-EFEVDDDGSLPFYILDAHEQ 345
              + + SAT GW ++ G   N V +EG       N  ES EFE+ D G+LPFYILDA+E+
Sbjct: 294  RNNDVTSATEGWMKICGNGENAVGEEGVAVDGNTNVDESSEFELKD-GALPFYILDAYEE 352

Query: 346  LSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESR 405
              GAN GT+YLFGKV+ G   HSCCV+VKN+QRC+YAIPN  +F  D I  +E++     
Sbjct: 353  PFGANSGTVYLFGKVEVGKQFHSCCVIVKNIQRCIYAIPNRSVFPMDSISGIERNPTADL 412

Query: 406  ISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKIN 465
            +   + R  L ++A GLK+EIA++L +LNVSN+I++PVKR YAF + ++P GE YVLKIN
Sbjct: 413  LP--SLRATLHELASGLKSEIADKLSDLNVSNFIMTPVKRNYAFERTDLPNGEQYVLKIN 470

Query: 466  YPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            YP+KDP LPADL+GE+F +LLGT++SALELFL+KRKVKGPSWLS+SKF + P+ QRVSWC
Sbjct: 471  YPYKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSKFVTRPSTQRVSWC 530

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            K+E+TVD PKDI V ++S ++ EVP V V A+NLKT+ N++ +V+EIVSAS++CCH+ KI
Sbjct: 531  KFEVTVDCPKDISVLTTSTNL-EVPTVVVGAVNLKTIINEKHNVHEIVSASLICCHRVKI 589

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D+PM   +W+K GMLSHFTVVRKL+G IFP+G  KEA+DRN KAGSNVL  ESSERALLN
Sbjct: 590  DSPMRPEDWQKRGMLSHFTVVRKLEGSIFPIGLAKEASDRNQKAGSNVLALESSERALLN 649

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
            RLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPSSMWSKIGRL+RS MP+L KG T
Sbjct: 650  RLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSSMWSKIGRLRRSLMPRLTKGST 709

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            ++GSGASPGIMSC+AGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K RKEV PHD+  M
Sbjct: 710  LYGSGASPGIMSCVAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKVRKEVSPHDIPMM 769

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            FQ+   L++L+EYGETDAWLS+ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL
Sbjct: 770  FQSSGELLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 829

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            LLH+F A+K+I PDKF   KE    K++ N      N ++    D + D++  + D  K 
Sbjct: 830  LLHSFHARKFIAPDKFARNKELNSTKRKMNPDTGGANADD-GAADPSVDDEVHNGDQSKA 888

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSS 945
            ++GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQE+NICFTTVERS DG VP+LP+S
Sbjct: 889  RKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEFNICFTTVERSSDGSVPNLPAS 948

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
            K TGVLPELL++LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTAN           RF
Sbjct: 949  KVTGVLPELLRSLVERRRMVKSWLKTASGLKKQQFDIQQQALKLTAN-----------RF 997

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            YAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AKAIAGKVI
Sbjct: 998  YAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVI 1057

Query: 1066 QE----------------VNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
            QE                VNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E 
Sbjct: 1058 QEMCKLKKDGLTKNASIQVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLREN 1116

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            IERKGLDMVRRDWSLLSK++GDFCL QILS  +C+DVVESIH+SL++VQE MRSGQ+ LE
Sbjct: 1117 IERKGLDMVRRDWSLLSKDIGDFCLKQILSGGTCDDVVESIHSSLVQVQEQMRSGQIELE 1176

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            KYVITK+LTK PE YPDAKNQPH  VALRLKQ+GYS GCSAGDTVPYIIC +Q + +  S
Sbjct: 1177 KYVITKSLTKAPEDYPDAKNQPH--VALRLKQNGYS-GCSAGDTVPYIICSQQDSDNAHS 1233

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
            VGIAQRARHP+ELK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD +
Sbjct: 1234 VGIAQRARHPEELKRDPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSA 1293

Query: 1290 KFQSKPSETMSSDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSI----C 1344
            KFQ + +E+ + D S  LL  + DE ERYRGCEPL LSCPSCS TFDCP V S I     
Sbjct: 1294 KFQPRLTESSNQDTSMMLLSVIDDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSASA 1353

Query: 1345 MSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMM 1404
             SVS+     +   NFWR +RCP+C +     + SP M+ANQ+KRQAD F+S+YYKGL M
Sbjct: 1354 TSVSDPIEGKDATANFWRHMRCPRCLDNTVESKFSPSMLANQMKRQADNFISLYYKGLQM 1413

Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
            CDDE CKY+T S+NLR++GD+ERGTVCPNYPRCNGRLVR+Y E+DLY+QL+YFC++LD  
Sbjct: 1414 CDDEGCKYSTHSVNLRVMGDSERGTVCPNYPRCNGRLVRQYKESDLYRQLSYFCYVLDAT 1473

Query: 1465 RGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            R +EK++  A++P E+E   +   + LA   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 1474 RCLEKLDQKARLPFEREFVAVGQTIKLALLEIQKIRDRCAFGWVQLKDLAVSI 1526


>gi|297797665|ref|XP_002866717.1| hypothetical protein ARALYDRAFT_332862 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297312552|gb|EFH42976.1| hypothetical protein ARALYDRAFT_332862 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1492

 Score = 1857 bits (4809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 939/1524 (61%), Positives = 1162/1524 (76%), Gaps = 59/1524 (3%)

Query: 10   GRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARR 69
            GRRRSRGAEA++R + LERLKA+R+GG RS    GY+I+L+ PI+DTV +DEYDALV+RR
Sbjct: 10   GRRRSRGAEATSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDDEYDALVSRR 69

Query: 70   REEARGFIVDDD---GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
            REEARGF+V+D     LGY DEG+EEDWS    P S+D+    G+ S + ++ +K  ++ 
Sbjct: 70   REEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLKKKKKGKEQM 129

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE 186
                V+K NP+L AAA + G+ RLS+M TS++ FKK K+    + E ++DEV+A+  PDE
Sbjct: 130  QQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILDEVIAQVTPDE 188

Query: 187  ADRERR-RRSVSSNIKSFVSVN----SVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV 241
            +DR++  RR     +   +S N    SV ++ ++  +    +    D +    ++   + 
Sbjct: 189  SDRKKHTRRKQPGTVPVTISRNKKLVSVTSSMEMKESEPTPLIYEDDCVFMENELMKEED 248

Query: 242  VEESKELKWESDNSTELTKRDNFVEVKEKV-KDEVNED--VKECKKLNAKIST-EKDPLL 297
            ++ES+     +  S E+   D+ +E + K+ K EV  +  VKE   LNA I   EKD  L
Sbjct: 249  MKESEVTPSHNVESMEVPGSDSVIEDENKIRKAEVKTELGVKEVFTLNATIDMKEKDSAL 308

Query: 298  SATAGWKEVSGGNMVLDEGKSGLNCQ-ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYL 356
            SATAGWKE  G     +    G +C+ ++EF++D DGSL FYILDA+E+  GA+MGT+YL
Sbjct: 309  SATAGWKEAMGKGGTENGALLGPSCEGKTEFDLDADGSLRFYILDAYEEAFGASMGTIYL 368

Query: 357  FGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQ 416
            FGKVK G T+ SCCVVVKN+QRCVYAIPN  +F + E++ LE++ ++S++SP +FR KL 
Sbjct: 369  FGKVKMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSHELIMLEQEVKDSQLSPESFRGKLH 428

Query: 417  DVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPAD 476
            ++A  LK EIA +LL LNVSN+ ++PVKR YAF + ++P GE YV+KINYPFKD PLP D
Sbjct: 429  EMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERPDVPTGEQYVMKINYPFKDRPLPED 488

Query: 477  LKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKD 536
            LKGE+FC+LLG+H+SALE F++KRK+ GPSWL I  FS+C     VSWCK+E+TV+SPKD
Sbjct: 489  LKGESFCALLGSHTSALEHFILKRKIMGPSWLKIFNFSTCSPSVGVSWCKFEVTVESPKD 548

Query: 537  IRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKK 596
            I V  S + +   PP  VTAINLKT+ N +Q+++EIVSASV+C H AKI+ PM A E K+
Sbjct: 549  ITVLVSEEKMVH-PPAVVTAINLKTIVNDKQNISEIVSASVLCFHNAKIEVPMPAPERKR 607

Query: 597  PGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDS 656
             G+LSHFTVVR  +G  +P+G+ KE  DRNSK G   L  E+SERALLNRL +EL KLDS
Sbjct: 608  SGILSHFTVVRNPEGTSYPIGWKKEVADRNSKNGCIALSIENSERALLNRLFLELNKLDS 667

Query: 657  DVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM 716
            DVLVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL KG T FGSGA+PG+M
Sbjct: 668  DVLVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-KGNTNFGSGATPGLM 726

Query: 717  SCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELI 776
            SCIAGRLLCD  LCSR+LL++VSYSLT L+KTQLN+DRKE+ P+D+ KMFQ+ ++L+ELI
Sbjct: 727  SCIAGRLLCDIDLCSRELLKQVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQSSKTLVELI 786

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
            E GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGAR+QR+EY LLH F +KKYI
Sbjct: 787  ECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARSQRIEYYLLHTFHSKKYI 846

Query: 837  VPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
            +PDK +  +KE K +K+R N+G EDRNVEEL + D   +ND S     K K+GPAYAGGL
Sbjct: 847  LPDKISQRMKEIKSSKRRMNYGPEDRNVEEL-DADLALENDPSKGS--KTKKGPAYAGGL 903

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELL 955
            VLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTT+ RS DG VP LPSS+T GVLP+L+
Sbjct: 904  VLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTMPRSEDG-VPRLPSSQTPGVLPKLM 962

Query: 956  KNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            ++LV  R+ VK  MK  +GLK  +LDI+Q ALKLTANSMYGCLGF NSRFYAKPLAELIT
Sbjct: 963  EHLVSIRKSVKLKMKKETGLKYWELDIRQHALKLTANSMYGCLGFPNSRFYAKPLAELIT 1022

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             QGREIL+ TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI +  AI  KVIQEVNKKY+CL
Sbjct: 1023 LQGREILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVNAIKSKVIQEVNKKYRCL 1082

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +ID DG+YKRMLLL+KKKYAAVK++FKDG P E IERKG+DMVRRDWSLLSKE+GD CLS
Sbjct: 1083 KIDCDGIYKRMLLLRKKKYAAVKLEFKDGKPCEDIERKGVDMVRRDWSLLSKEIGDLCLS 1142

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            +IL   SCEDVVE++HN LMK++E+MR+GQVALEKYVITKTLTKPP AYPD+K+QPHVQV
Sbjct: 1143 KILYGGSCEDVVEAVHNELMKIKEEMRNGQVALEKYVITKTLTKPPAAYPDSKSQPHVQV 1202

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV-GIAQRARHPDELKKGDGKWMIDID 1254
            ALR++Q GY  G +A DTVPYIIC EQG +S +S  GIA+RARHPDE+K    +W++DID
Sbjct: 1203 ALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSDGSRWLVDID 1262

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDE 1314
            YY +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++SK ++  SSDPS+SLLFA  DE
Sbjct: 1263 YYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSKYRSKSNDAASSDPSTSLLFAASDE 1322

Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN---FWRTLRCPKCPE 1371
            ER                                  P+ PETE +   FW  L CPKC +
Sbjct: 1323 ER----------------------------------PATPETEESDSTFWLKLHCPKCQQ 1348

Query: 1372 EVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVC 1431
            E   GRISP MIANQVKRQ DGFVSMYYKG+M+CDDE+CK+TT S N RL+G+ ERGTVC
Sbjct: 1349 EDSTGRISPAMIANQVKRQVDGFVSMYYKGIMVCDDESCKHTTRSPNFRLLGERERGTVC 1408

Query: 1432 PNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVAL 1491
            PNYP CNG L+RKYTEADLYKQL+YFCH+LDTQ  +EKM++  KI +EK + KIRP V  
Sbjct: 1409 PNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQHSLEKMDVGMKIQVEKAMTKIRPAVES 1468

Query: 1492 AASTVQRIRERCAYGWVKLNDIAI 1515
            AA+  +  R+RCAYGW++L DIAI
Sbjct: 1469 AAAITRSNRDRCAYGWLQLTDIAI 1492


>gi|10177597|dbj|BAB10944.1| DNA polymerase alpha 1 [Arabidopsis thaliana]
          Length = 1492

 Score = 1853 bits (4799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 947/1539 (61%), Positives = 1174/1539 (76%), Gaps = 71/1539 (4%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M  +     GRRRSRGAEAS+R + LERLKA+R+GG RS    GY+I+L+ PI+DTV ++
Sbjct: 1    MSGDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDE 60

Query: 61   EYDALVARRREEARGFIVDDD---GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQ 117
            EYDALV+RRREEARGF+V+D     LGY DEG+EEDWS    P S+D ES DG R   + 
Sbjct: 61   EYDALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTD-ESDDGGRFSGRL 119

Query: 118  RIEKRGKKENNQ-NVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVID 176
            + +K+GK++  Q  V+K NP+L AAA + G+ RLS+M TS++ FKK K+    + E ++D
Sbjct: 120  KKKKKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILD 178

Query: 177  EVLAEFAPDEADRERRRR---------SVSSNIKSFVSVNSVKTNSQLVTNST---NSVK 224
            E++A+  PDE+DR++  R         ++  N K F   +S+       T ST   +SV 
Sbjct: 179  EIIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKESEPTPSTYEGDSVS 238

Query: 225  ENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV-KEKVKDEVNEDVKECK 283
             +++L+      ++  +  E+ EL       +++ K D   ++ K +VK E+   VKE  
Sbjct: 239  MDNELMKEEDMKESEVIPSETMELL-----GSDIVKEDGSNKIRKTEVKSELG--VKEVF 291

Query: 284  KLNAKIST-EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQ-ESEFEVDDDGSLPFYILD 341
             LNA I   EKD  LSATAGWKE  G     +    G + + ++EF++D DGSL F+ILD
Sbjct: 292  TLNATIDMKEKDSALSATAGWKEAMGKVGTENGALLGSSSEGKTEFDLDADGSLRFFILD 351

Query: 342  AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            A+E+  GA+MGT+YLFGKVK G T+ SCCVVVKN+QRCVYAIPN  +F + E++ LE++ 
Sbjct: 352  AYEEAFGASMGTIYLFGKVKMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSHELIMLEQEV 411

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
            ++SR+SP +FR KL ++A  LK EIA +LL LNVSN+ ++PVKR YAF + ++PAGE YV
Sbjct: 412  KDSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERPDVPAGEQYV 471

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            LKINY FKD PLP DLKGE+F +LLG+H+SALE F++KRK+ GP WL IS FS+C   + 
Sbjct: 472  LKINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISSFSTCSPSEG 531

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            VSWCK+E+TV SPKDI +  S + V   PP  VTAINLKT+ N++Q+++EIVSASV+C H
Sbjct: 532  VSWCKFEVTVQSPKDITILVSEEKVVH-PPAVVTAINLKTIVNEKQNISEIVSASVLCFH 590

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
             AKID PM A E K+ G+LSHFTVVR  +G  +P+G+ KE +DRNSK G NVL  E+SER
Sbjct: 591  NAKIDVPMPAPERKRSGILSHFTVVRNPEGTGYPIGWKKEVSDRNSKNGCNVLSIENSER 650

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            ALLNRL +EL KLDSD+LVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL 
Sbjct: 651  ALLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL- 709

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
            KG + +GSGA+PG+MSCIAGRLLCDT LCSRDLL+EVSYSLT L+KTQLN+DRKE+ P+D
Sbjct: 710  KGNSNYGSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPND 769

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            + KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGARAQR
Sbjct: 770  IPKMFQSSKTLVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQR 829

Query: 822  VEYLLLHAFRAKKYIVPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            +EY LLH F +KK+I+PDK +  +KE K +K+R ++  EDRNV+EL + D   +ND S  
Sbjct: 830  IEYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDEL-DADLTLENDPSKG 888

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVP 940
               K K+GPAYAGGLVLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTT+ RS DG VP
Sbjct: 889  S--KTKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRSEDG-VP 945

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
             LPSS+T G+LP+L+++LV  R+ VK  MK  +GLK  +LDI+QQALKLTANSMYGCLGF
Sbjct: 946  RLPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLKYWELDIRQQALKLTANSMYGCLGF 1005

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
            SNSRFYAKPLAELIT QGR+IL+ TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI + KAI
Sbjct: 1006 SNSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAI 1065

Query: 1061 AGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
              KVIQEVNKKY+CL+ID DG+YKRMLLL+KKKYAAVK+QFKDG P E IERKG+DMVRR
Sbjct: 1066 KSKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGKPCEDIERKGVDMVRR 1125

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DWSLLSKE+GD CLS+IL   SCEDVVE+IHN LMK++E+MR+GQVALEKYVITKTLTKP
Sbjct: 1126 DWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKTLTKP 1185

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV-GIAQRARHP 1239
            P AYPD+K+QPHVQVALR++Q GY  G +A DTVPYIIC EQG +S +S  GIA+RARHP
Sbjct: 1186 PAAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHP 1245

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
            DE+K    +W++DIDYY +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++SK ++  
Sbjct: 1246 DEVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSKYRSKSNDAT 1305

Query: 1300 SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
            SSDPS+SLLFA  DEE                                S+KP+ PETE +
Sbjct: 1306 SSDPSTSLLFATSDEE--------------------------------SKKPATPETEES 1333

Query: 1360 ---FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
               FW  L CPKC +E   G ISP MIANQVKRQ DGFVSMYYKG+M+C+DE+CK+TT S
Sbjct: 1334 DSTFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVSMYYKGIMVCEDESCKHTTRS 1393

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
             N RL+G+ ERGTVCPNYP CNG L+RKYTEADLYKQL+YFCH+LDTQ  +EKM++  +I
Sbjct: 1394 PNFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCSLEKMDVGVRI 1453

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515
             +EK + KIRP V  AA+  +  R+RCAYGW++L DI I
Sbjct: 1454 QVEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1492


>gi|115441281|ref|NP_001044920.1| Os01g0868300 [Oryza sativa Japonica Group]
 gi|113534451|dbj|BAF06834.1| Os01g0868300, partial [Oryza sativa Japonica Group]
          Length = 1244

 Score = 1764 bits (4570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1248 (69%), Positives = 1036/1248 (83%), Gaps = 22/1248 (1%)

Query: 284  KLNAKISTEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGS 334
            +LNAKI TE      + SATAGW ++ G G+    EG    N      + SEFE+ D G+
Sbjct: 5    RLNAKIKTEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GA 63

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            LPFYILDA+E+  GAN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I
Sbjct: 64   LPFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTI 123

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             +LEK++  S  SP + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++
Sbjct: 124  SRLEKNSTTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDL 182

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P GE YVLKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF 
Sbjct: 183  PNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFL 242

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
            +CPA QRVSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVS
Sbjct: 243  ACPATQRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVS 301

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
            ASV+CCH+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL
Sbjct: 302  ASVICCHRVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVL 361

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
              ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+R
Sbjct: 362  ALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRR 421

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+R
Sbjct: 422  SVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKER 481

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            KEV PHD+  MFQ+  +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTL
Sbjct: 482  KEVSPHDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTL 541

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            QG+RAQRVEYLLLHAF A+K+IVPDKF   KE    K++ N   E    +E    D + D
Sbjct: 542  QGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSID 598

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
            ++  H D  K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS
Sbjct: 599  DEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRS 658

Query: 935  PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSM 994
             DG VP+LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSM
Sbjct: 659  ADGNVPNLPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSM 718

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YGCLGFSNSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI
Sbjct: 719  YGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDI 778

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            ++AK IAGKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKG
Sbjct: 779  SRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKG 837

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDMVRRDWSLLSKE+GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+IT
Sbjct: 838  LDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIIT 897

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K+LTK PE YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S GIAQ
Sbjct: 898  KSLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQ 956

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RARHP+ELK+   KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+
Sbjct: 957  RARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSR 1016

Query: 1295 PSETMSSDPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
             +E+ + D SS LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S 
Sbjct: 1017 LTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSN 1076

Query: 1354 P----ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
            P    +   NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE 
Sbjct: 1077 PNEGNDASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEG 1136

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
            CKY+T S+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK
Sbjct: 1137 CKYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEK 1196

Query: 1470 MEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            ++  A++P EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1197 LDQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1244


>gi|297795441|ref|XP_002865605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311440|gb|EFH41864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1449

 Score = 1759 bits (4557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 923/1519 (60%), Positives = 1125/1519 (74%), Gaps = 92/1519 (6%)

Query: 10   GRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARR 69
            GR+R  GAEAS+R EAL RLKA R+GGRR+G      I+LE PI+DTV ++EY ALV+RR
Sbjct: 10   GRKRRPGAEASSRKEALVRLKANRKGGRRNGGGC--EIRLEKPIFDTVGDEEYQALVSRR 67

Query: 70   REEARGFIVDDDGLGYGDEGQEEDWS-VAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
            REEARGF+V+D  LGY DEG+EEDWS  +G   S+D ES DG       R+++R K E  
Sbjct: 68   REEARGFVVEDGDLGYVDEGEEEDWSKPSGGAESTDGESDDG-----GGRLQRRRKTEK- 121

Query: 129  QNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD 188
               +K N SL AAA + G+ RLS+M T ++ FKK+  +KVK  ES++DEVLAE +PD+ D
Sbjct: 122  ---KKVNLSLKAAATITGEGRLSSMFTCSS-FKKT--DKVK-CESILDEVLAEVSPDDID 174

Query: 189  RERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKEL 248
            RER  +               +       N  N   E  D         +  +V   KE 
Sbjct: 175  RERHHKR--------------RKQQPATLNKKNLGMEMLD---------SPSIVSMEKE- 210

Query: 249  KWESDNSTELTKRDNFVEVKEKVK-----DEVNEDVKECKKLNAKISTE-KDPLLSATAG 302
              ++ +  E+    + V ++++ +     D    D  E   LNA I  E KDP  +ATAG
Sbjct: 211  --QATSGMEMQDSPSIVSMEKEFQVIPPHDSRQSDANEVFTLNALIDMEDKDPAFTATAG 268

Query: 303  WKEVSGGNMVLDEG---KSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGK 359
            WKE  G     +      S +N  ++EF++D  GSL FYILDA+E+  GA+MGT++LFGK
Sbjct: 269  WKEAMGKGGTYENVVPLASAVNECQTEFDLDAHGSLLFYILDAYEEPFGASMGTIHLFGK 328

Query: 360  VKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVA 419
            VK   T+ SCC VVKN+QRCVYAIPN  +F + E+M LE++ +ESR+SP +FR KL ++A
Sbjct: 329  VKMRDTYKSCCAVVKNIQRCVYAIPNDSIFPSHELMTLEQEVKESRLSPESFRGKLHEMA 388

Query: 420  LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKG 479
              LK EI+ QLL LNVSNY ++ VKR YAF + ++PAGE YVLKINYPFKDPPLP DLKG
Sbjct: 389  SKLKKEISQQLLKLNVSNYSMALVKRNYAFDRPDVPAGEQYVLKINYPFKDPPLPEDLKG 448

Query: 480  ENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV 539
            E+FC++LG+H+SALELF++KRK+ GPSWL IS FS+    QRVSWCK+E+TV+SPK I V
Sbjct: 449  ESFCAVLGSHTSALELFILKRKIMGPSWLKISIFSATSPSQRVSWCKFEVTVESPKVITV 508

Query: 540  SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGM 599
            S   +     PP  VTAINLKT+ N +Q+++EIVSAS++C H AKID PML  E K+ G+
Sbjct: 509  SIPQEKTVH-PPAVVTAINLKTIVNVKQNISEIVSASLLCFHNAKIDVPMLGPERKRSGV 567

Query: 600  LSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVL 659
            LSHFTVVR  +G  +P+G+ KE   RNSK G +VL  E+SERALLNRL +EL KLDSDVL
Sbjct: 568  LSHFTVVRNPEGTGYPIGWKKEVAVRNSKNGCSVLSFENSERALLNRLFLELNKLDSDVL 627

Query: 660  VGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCI 719
            VGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL KG T FGSGA+PG+MSC+
Sbjct: 628  VGHNISGFDLDVLLQRAQACKVLSSMWSKIGRLKRSFMPKL-KGSTNFGSGATPGLMSCM 686

Query: 720  AGRLLCDTFLCSRDLLR-EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEY 778
            AGRLLCDT LCSRDLL+ EVS+SLT L+KTQLN++RKE  P+D+ KMFQ+ ++L+ELI+ 
Sbjct: 687  AGRLLCDTDLCSRDLLKQEVSFSLTDLSKTQLNRERKETSPNDIPKMFQSSKTLVELIDC 746

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
            GETDAWLSMELMFHLS+LPLT QLTNISGNLWGKTLQGARAQR EY LLH F +KK+I+P
Sbjct: 747  GETDAWLSMELMFHLSILPLTLQLTNISGNLWGKTLQGARAQRNEYYLLHTFHSKKFILP 806

Query: 839  DKF-TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            DK   + KE K +K+R NHG ED +V+EL + D   +ND S  +  K K+GPAYAGGLVL
Sbjct: 807  DKIPQHRKERKASKRRINHGPEDHSVDEL-DFDLALENDPSKGN--KTKKGPAYAGGLVL 863

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKN 957
            EPKKGLYDKY+LLLDF+SLYPSIIQEYNICFTT+ R+  G VP LPSS+T G+LP+L+++
Sbjct: 864  EPKKGLYDKYVLLLDFSSLYPSIIQEYNICFTTIPRAEVG-VPRLPSSQTPGILPKLMEH 922

Query: 958  LVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            LV  R+ V+  MK  +GLK ++LDI+Q+ALKL ANS+YG LGFSNSRFYAKPLAELIT Q
Sbjct: 923  LVGIRKCVRLKMKKETGLKCRELDIRQEALKLAANSLYGYLGFSNSRFYAKPLAELITLQ 982

Query: 1018 GREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEI 1077
            GREIL  TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI + KAI  K IQEVNKKY+ L+I
Sbjct: 983  GREILLRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIGAKAIQEVNKKYRFLKI 1042

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + D +YKRMLLL+KKKYAA+K+QFKDG   E IERKG+DMVRRDWSLLSKE+GD CL++I
Sbjct: 1043 ECDAIYKRMLLLRKKKYAAIKLQFKDGKICEDIERKGVDMVRRDWSLLSKEIGDLCLAKI 1102

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L   SCEDVVE+IHN LMK+ E+MR+GQVA+EKYVITK LTK PEAYPD+K+QPHVQVAL
Sbjct: 1103 LYGGSCEDVVEAIHNELMKINEEMRNGQVAVEKYVITKALTKSPEAYPDSKSQPHVQVAL 1162

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQG-TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
            R++Q GY  G SA DTVPYIIC EQG TSS SS GIA+RARHP E+K  D +W++DIDYY
Sbjct: 1163 RMRQRGYKKGFSAKDTVPYIICYEQGNTSSASSAGIAERARHPAEVKSDDSRWLVDIDYY 1222

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEER 1316
             +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++S+ + T  SDPS+SLLFA  DEE 
Sbjct: 1223 LAQQIHPVVSRLCAEIKGTSPERLAECLGLDPSKYRSRSNVTTGSDPSTSLLFATSDEE- 1281

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
                                           S K    E++  FW  L C KC  E    
Sbjct: 1282 -------------------------------SNKSKTAESDSIFWLKLHCLKCEAEGSTR 1310

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR 1436
            RISP MIANQVKRQ DGFVS YYKG+MMCDDE+CKYTT S N RL+GD ERGTVCPNYP 
Sbjct: 1311 RISPAMIANQVKRQIDGFVSTYYKGIMMCDDESCKYTTRSPNFRLLGDRERGTVCPNYPN 1370

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTV 1496
            CNG L+RKYTEADLY QL+YFCH+LDTQ  +EKM+   +I +EK + KIRP V  AAS  
Sbjct: 1371 CNGTLLRKYTEADLYWQLSYFCHILDTQCSLEKMDDGVRIQVEKAMMKIRPAVESAASVA 1430

Query: 1497 QRIRERCAYGWVKLNDIAI 1515
            + IR+RCAYGW++L DIAI
Sbjct: 1431 RSIRDRCAYGWLQLTDIAI 1449


>gi|449518250|ref|XP_004166155.1| PREDICTED: DNA polymerase alpha catalytic subunit-like, partial
            [Cucumis sativus]
          Length = 1027

 Score = 1701 bits (4406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/1028 (78%), Positives = 911/1028 (88%), Gaps = 5/1028 (0%)

Query: 492  ALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPP 551
            ALEL L+KRK+KGPSWLSISKFSS PA QRVSWCK+E+ VDSPKD++ S+SS    E+PP
Sbjct: 1    ALELLLIKRKIKGPSWLSISKFSSRPASQRVSWCKFEVIVDSPKDVQTSTSSSKNLEIPP 60

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            + VTAIN+KT+ N+RQ VNEIVSASV+CC +AKID PMLA+EWKKPGML HFTV+RKLDG
Sbjct: 61   MIVTAINIKTIINERQSVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTVIRKLDG 120

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
            GIFPMGF KE+TDRNSKAGSNVL CE +ERALLNRLMIEL+KLDSDVLVGHNISGFDLDV
Sbjct: 121  GIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDV 180

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            LLHRAQ CRVPSSMWSKIGRLKRS MPKL KG  IFGSGASPG+MSCIAGRLLCDT+L S
Sbjct: 181  LLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGNIFGSGASPGLMSCIAGRLLCDTYLSS 240

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            RDLL+E+SYSLT+LAKTQLNKDRKEV  H++ KM+Q  ESLM LIEYGETDAWLS+ELMF
Sbjct: 241  RDLLKEISYSLTELAKTQLNKDRKEVTSHEIPKMYQASESLMNLIEYGETDAWLSLELMF 300

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK-FTYVKETKMA 850
            HLSVLPLTRQLTNISGNLWG++LQGARAQRVEYLLLHAF AKKYIVPDK  +YVK+ K+ 
Sbjct: 301  HLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKDKKIV 360

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
            K+R+NHG E++NV++   +D N +    + D  KGK+GP+Y GGLVLEPK+GLYDKY+LL
Sbjct: 361  KKRTNHGSEEKNVDQFDLDDGNVE--APNTDSGKGKKGPSYLGGLVLEPKRGLYDKYVLL 418

Query: 911  LDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            LDFNSLYPSIIQEYNICFTTVERSPDG++P LPSS+ TGVLPELLKNLVQRRRMVK+WMK
Sbjct: 419  LDFNSLYPSIIQEYNICFTTVERSPDGVIPPLPSSRVTGVLPELLKNLVQRRRMVKSWMK 478

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             ASGLK+QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT QGREIL+STVDLV+
Sbjct: 479  NASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVK 538

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            NNL+LEVIYGDTDSIMIHSG+DD+ K KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK
Sbjct: 539  NNLSLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 598

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAAVK+QFKDGMPYEVIERKGLDMVRRDWSLLSKE+GDFCL+QILS  SCEDVVESI
Sbjct: 599  KKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVVESI 658

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+SLMK+QEDMR GQVALEKY+ITKTLTKPPEAYPDA+NQPHVQVA RLKQ GY+TGCS 
Sbjct: 659  HDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYTTGCSV 718

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GDT+PYIICCEQ ++SG S GIAQRARHPDELKK DGKWMIDI+YY SQQIHPVVSRLCA
Sbjct: 719  GDTIPYIICCEQESTSGGSTGIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCA 778

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSC 1330
            SI+GTSPERLADCLGLD SKFQ++  E   SD S+SLL +V DEERY+GC PL  +CPSC
Sbjct: 779  SIQGTSPERLADCLGLDSSKFQNRSIEVSRSDISTSLLCSVNDEERYQGCTPLTFTCPSC 838

Query: 1331 SSTFDCPAVCSSICMSVSEKPSK--PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVK 1388
            S TF+CP + SSI  S   K  +   E    FW  LRCPKCP+E  AGRI+PGMIANQVK
Sbjct: 839  SGTFNCPPIFSSIYKSAEGKQERLVDEPTTKFWNNLRCPKCPDEANAGRITPGMIANQVK 898

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEA 1448
            RQAD F+SMYY GLMMCDDETCKY T ++NLR++GD+E+GT+CPNYP CNG LVRKYTEA
Sbjct: 899  RQADRFISMYYNGLMMCDDETCKYATRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEA 958

Query: 1449 DLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWV 1508
            DLYKQL+YF H+LDT+R +EK+E+ A++ LEKE+  IRPVV LAA+T+Q IR+R AYGWV
Sbjct: 959  DLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMASIRPVVELAATTIQSIRDRSAYGWV 1018

Query: 1509 KLNDIAIS 1516
            +L +  ++
Sbjct: 1019 QLQNFVVT 1026


>gi|2826900|dbj|BAA24573.1| DNA polymerase alpha catalytic subunit [Oryza sativa]
          Length = 1243

 Score = 1690 bits (4376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 838/1239 (67%), Positives = 1014/1239 (81%), Gaps = 26/1239 (2%)

Query: 296  LLSATAGWKEV-------SGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSG 348
            + SATAGW ++        G   V     +G++ + SEFE+ D G+LPFYILDA+E+  G
Sbjct: 14   MASATAGWMKICRDGDNAGGEGTVAANSNTGVD-ESSEFELKD-GALPFYILDAYEEPFG 71

Query: 349  ANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISP 408
            AN GT+YLFGKV+ G   HSCCVVVKNMQRC+YAIP+  +F  D I +LEK++  S  SP
Sbjct: 72   ANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEKNSTTSDSSP 131

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPF 468
             + R  L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P GE YVLKINYP+
Sbjct: 132  -SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPY 190

Query: 469  KDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYE 528
            KD  LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA QRVSWCK+E
Sbjct: 191  KDSALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFE 250

Query: 529  ITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTP 588
            +TVDSPKDI V  +S  + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH+ KID+P
Sbjct: 251  VTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCHRVKIDSP 309

Query: 589  MLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLM 648
            M + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL  ESSERALLNRLM
Sbjct: 310  MRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESSERALLNRLM 369

Query: 649  IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFG 708
            IEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L KG T++G
Sbjct: 370  IELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLTKGNTLYG 429

Query: 709  SGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            SGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD+  MFQ+
Sbjct: 430  SGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHDIPPMFQS 489

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
              +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RAQRVEYLLLH
Sbjct: 490  SGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLH 549

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            AF A+K+IVPDKF   KE    K++ N   E    +E    D + D++  H D  K K+G
Sbjct: 550  AFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVDQGKTKKG 606

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT 948
            P+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG VP+LP+SKTT
Sbjct: 607  PSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPNLPASKTT 666

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            GVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFSNSRFYAK
Sbjct: 667  GVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAK 726

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEV 1068
            PLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK IAGKVIQEV
Sbjct: 727  PLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEV 786

Query: 1069 NKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            NKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV   DG   E IERKGLDMVRRDWSLLSKE
Sbjct: 787  NKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRDWSLLSKE 845

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            +GDFCL+QILS  SC+DV+ESIH+SL++VQE MR GQ  LEKY+ITK+LTK PE YPDAK
Sbjct: 846  IGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAK 905

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI-AQRA-RHPDELKKGD 1246
            NQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + S  S  I +QRA R P+  K   
Sbjct: 906  NQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSERIDSQRAQREPEGWKNLY 964

Query: 1247 GKWMIDI--DYYASQQIHPVVSRLCASI-EGTSPERLADCLGLDPSKFQSKPSETMSSDP 1303
                + I   YY  Q+I+PVVSR+CA++  GT P RLA+CLGLD SKFQS+ +E+ + D 
Sbjct: 965  TMVCLRILASYYLQQRINPVVSRVCAAVSRGTEPARLAECLGLDSSKFQSRLTESDNQDT 1024

Query: 1304 SSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP----ETEY 1358
            SS LL  + DE ERYRGCEPL LSCPSCS+TFDCP V S I  S S   S P    +   
Sbjct: 1025 SSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGNDASI 1084

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
            NFWR +RCP+CP++ +  R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T S+N
Sbjct: 1085 NFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVN 1144

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPL 1478
            LR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D  R +EK++  A++P 
Sbjct: 1145 LRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPF 1204

Query: 1479 EKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            EKE   +   + LA   VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1205 EKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1243


>gi|300681492|emb|CBH32588.1| DNA polymerase alpha catalytic subunit,putative,expressed [Triticum
            aestivum]
          Length = 1369

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 865/1447 (59%), Positives = 1071/1447 (74%), Gaps = 111/1447 (7%)

Query: 103  SDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKK 162
            SD E  DG    +KQ    + K+ + Q       S  AAAAMMGKQR S++      FKK
Sbjct: 2    SDGE--DGSPRKRKQPRPPQLKRPSQQFAAAAALSAAAAAAMMGKQRPSSL------FKK 53

Query: 163  SKDEKVKES----ESVIDEVLAEFAPDEADRERRRRSV---SSNIKSFVSVNSVKTNSQL 215
               ++ K S    +S++D+V+AEFAPDE DRE RRR V   S+     V V  +K   Q 
Sbjct: 54   PGSDRTKGSSLAADSIVDDVIAEFAPDENDREERRRRVGRISAPTPLPVPVPQIKA-IQA 112

Query: 216  VTNSTNSVKENSDLINNFVQIQNCDV-VEESKELKWESD------------NSTELTKRD 262
              ++   V+ +     + V     D+ VE   EL+ + D            +S EL   +
Sbjct: 113  ALHAEMEVRSDGAFEADGVSDHGSDMEVELQPELELKPDVEMQPKLEAAPGSSAELVDEN 172

Query: 263  NFVEVKEKVKDEVNEDVK--ECKKLNAKI---STEKDPLLSATAGWKEV------SGGNM 311
               +  E++K E N +VK  + ++LNAKI    T    +LSATA W ++      +GG  
Sbjct: 173  ---KSSEELKQEANGEVKIEKVRRLNAKIKAEGTRNGDMLSATACWMKICGDGENAGGKG 229

Query: 312  VLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCV 371
             +         + SEFE+ D G+LPFY+LDA+E+  G N GT+YLFGKV  G   HSCCV
Sbjct: 230  EVTVHDVVDVDESSEFELKD-GALPFYLLDAYEEPFGINSGTVYLFGKVVRGKRFHSCCV 288

Query: 372  VVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL 431
            VVKNMQRC+YAIP+  +F  D I ++E+++  S  SP + R  L +++ GLK+EIA++L 
Sbjct: 289  VVKNMQRCIYAIPSSSVFPRDTISRIERNSTSSDASP-SLRATLHELSSGLKSEIADKLS 347

Query: 432  NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSS 491
            +LNVSN++++PVKR YAF + ++P GE YVLK+NYP+KDP +PADL+G+ F +LLGT++S
Sbjct: 348  DLNVSNFVMTPVKRNYAFERTDVPIGEQYVLKVNYPYKDPAVPADLRGKYFHALLGTNNS 407

Query: 492  ALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPP 551
            ALELFL+KRK+KGPSWLSISKF +CP+ +RVSWCK+E+TV+ PKDI V  +S  + EVPP
Sbjct: 408  ALELFLIKRKIKGPSWLSISKFVACPSTERVSWCKFEVTVECPKDISVLVTSTTL-EVPP 466

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            V V A+NLKT+ N++ +V+EIVSASV+CCH+ KIDTPM + +W+K G +SHFTV+RKL+G
Sbjct: 467  VVVAAVNLKTIINEKHNVHEIVSASVICCHQVKIDTPMRSEDWQKRGTISHFTVMRKLEG 526

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
             IFP+G  KEA+DRN KAGSNVL  ESSERALLNRLMIEL KLD DVLVGHNISGFDLDV
Sbjct: 527  SIFPIGLTKEASDRNQKAGSNVLALESSERALLNRLMIELGKLDCDVLVGHNISGFDLDV 586

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            LLHRAQ C+VPSSMWSKIGRL+RS +P+L KG T++GSGASPGIMSCIAGRLLCDT+LCS
Sbjct: 587  LLHRAQTCKVPSSMWSKIGRLRRSVIPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCS 646

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            RDLLREV                                      EYGETDA LS+ELMF
Sbjct: 647  RDLLREV--------------------------------------EYGETDACLSLELMF 668

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH+F +KK+IVPDKF   KE   AK
Sbjct: 669  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFPSKKFIVPDKFAACKELNFAK 728

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            ++ N      N       D + D++  H D  K ++ P+YAGGLVLEPKKGLYDKYILLL
Sbjct: 729  RKLNADTGGGNAV-----DPSIDDEVHHGDPGKVRKVPSYAGGLVLEPKKGLYDKYILLL 783

Query: 912  DFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
            DFNSLYPSIIQE+NICFTTVERS DG +P+LP+SK TGVLPELLK+LV+RRRMVK+W+KT
Sbjct: 784  DFNSLYPSIIQEFNICFTTVERSSDGNLPNLPTSKATGVLPELLKSLVERRRMVKSWLKT 843

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            ASGLK QQ DIQQQALKLTANSMYGCLGF++SRF+AKPLAELIT QGREIL++TV+LVQN
Sbjct: 844  ASGLKRQQFDIQQQALKLTANSMYGCLGFTSSRFFAKPLAELITLQGREILQNTVNLVQN 903

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
            NLNLEVIYGDTDSIMI++G+DDI+KAK+IAGKVIQEVNKKY+CLEIDLDG+YKRMLLLKK
Sbjct: 904  NLNLEVIYGDTDSIMIYTGLDDISKAKSIAGKVIQEVNKKYRCLEIDLDGVYKRMLLLKK 963

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KKYAA+KV   DG   E IERKGLDMVRRDWSLLSKE+GDFCL+QILS  +C+DVVESIH
Sbjct: 964  KKYAAIKVAL-DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGTCDDVVESIH 1022

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
            NSL++VQ  M+SGQ+ LEKY+ITK+LTK PE YPDAKNQPHVQVALRLKQ+G+S GCSAG
Sbjct: 1023 NSLVQVQAQMKSGQIELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGFS-GCSAG 1081

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            DTVPYIIC +Q +    S GIAQRARHPDEL +   KWMIDI+YY SQQIHPVVSRLCAS
Sbjct: 1082 DTVPYIICSQQDSDKTHSGGIAQRARHPDELTRDPNKWMIDIEYYLSQQIHPVVSRLCAS 1141

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD-EERYRGCEPLILSCPSC 1330
            IEGTSP RLA+CLGLD SKFQS+ + + + D SS LL    D EERYRGCEP+ LSCP C
Sbjct: 1142 IEGTSPARLAECLGLDSSKFQSRSTGSSNEDMSSMLLSVTDDEEERYRGCEPMRLSCPCC 1201

Query: 1331 SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQ 1390
            +STF+CP V SS+  S+S+     +   NFWR +RCP+CP++ +  R+SP +IANQ    
Sbjct: 1202 TSTFECPPV-SSLIASLSDANEGKDAIVNFWRRMRCPRCPDDTDECRVSPAVIANQ---- 1256

Query: 1391 ADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADL 1450
                          CDDE CKY+T  +NLR++GD+ERGT+CPNYP+CNGRLVR+YTEADL
Sbjct: 1257 --------------CDDEGCKYSTHIVNLRVMGDSERGTICPNYPQCNGRLVRQYTEADL 1302

Query: 1451 YKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKL 1510
            Y+QL+Y C++LD  R ++K++   ++P EKE   +   ++ A   +Q+IR+RCA+GWV+L
Sbjct: 1303 YRQLSYLCYVLDATRCLDKLDQKMRLPFEKEFAVLNQTISSAFLEIQKIRDRCAFGWVQL 1362

Query: 1511 NDIAISV 1517
             D+A+S+
Sbjct: 1363 TDLAVSI 1369


>gi|297795609|ref|XP_002865689.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311524|gb|EFH41948.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1550

 Score = 1585 bits (4105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 831/1378 (60%), Positives = 1001/1378 (72%), Gaps = 115/1378 (8%)

Query: 150  LSAMLTSTAMFK-KSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNS 208
            L++M T ++ +K K   +KVK  ES++DEVLAEF PD+ DRER +R      K   +VN 
Sbjct: 276  LTSMFTCSSFYKGKETTDKVKCCESILDEVLAEFTPDDMDRERHKRR-----KQSATVN- 329

Query: 209  VKTNSQLVTNSTNSVK-ENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV 267
                  LV +S + V  E   ++  F      +V+  S                      
Sbjct: 330  ---KKYLVHDSPSIVTMEKEQVVTEF------EVIPPS---------------------- 358

Query: 268  KEKVKDEVNEDVKECKKLNAKIST-EKDPLLSATAGWKEV--SGG--NMVLDEGKSGLNC 322
                      D  E   LNA I   +KD  L A AGWKE   +GG  N V     S   C
Sbjct: 359  ----------DANEVFTLNAAIDMKDKDTPLRANAGWKEAMCTGGTENEVPLAFGSDSEC 408

Query: 323  QESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA--GSTHHSCCVVVKNMQRCV 380
            Q  EF+++ DGSL FYILDA E+   A+MGT+YL  KVK   G T+ SCCVVV N+QRCV
Sbjct: 409  QTEEFDLEADGSLLFYILDACEKPFDASMGTIYLLRKVKVKKGDTYKSCCVVVNNIQRCV 468

Query: 381  YAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIV 440
            YAIPN  +F + E+M LE++ +ESR+SP +FR KL ++A  LK EI+ QLL LNVSNY +
Sbjct: 469  YAIPNDSIFPSHELMTLEQEVKESRLSPESFRGKLHEMASKLKKEISQQLLQLNVSNYSM 528

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKR 500
            + VKR YAF + ++P G+ YVLKINY FKDPPLP DLKGE+FC++LG+H+SALELF++KR
Sbjct: 529  AIVKRNYAFDRPDVPTGQQYVLKINYSFKDPPLPEDLKGESFCTVLGSHTSALELFILKR 588

Query: 501  KVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
            K+ GPSWL IS FS  P  QRVSWCK E+TV+SPK I VS   +     PP  VTAINLK
Sbjct: 589  KIMGPSWLKISVFS--PPSQRVSWCKCEVTVESPKVITVSIPKEKTVH-PPAVVTAINLK 645

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNK 620
            T+ N++Q+++EIVSA+V+C H AKID PM   E K+ G+LSHFTVVR  +G  +P+G+ K
Sbjct: 646  TIVNEKQNISEIVSAAVLCFHNAKIDVPMPGPERKRSGVLSHFTVVRNPEGTGYPIGWKK 705

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
            E  DRNSK G +VL  E+SE ALL R   EL  LDSDVLVGHNISGFDLDVLL RAQ C+
Sbjct: 706  EVADRNSKNGCSVLSFENSECALLTRFFDELNNLDSDVLVGHNISGFDLDVLLRRAQACK 765

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
            V S++WSKIGRLKRS MPKL KG T FGSGA+PG+MSCIAGRLLCDT LCSRDLL +   
Sbjct: 766  VKSNIWSKIGRLKRSFMPKL-KGNTNFGSGATPGLMSCIAGRLLCDTDLCSRDLLEQ--- 821

Query: 741  SLTQLAKTQLNKDRKEVG-PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
               QL   +  KD  + G P+D+ KMFQ+ ++L+ELIE GETDAWLSMELMFHL+VLPLT
Sbjct: 822  ---QLFVNRPFKDTAKPGQPNDIPKMFQSSKTLVELIECGETDAWLSMELMFHLNVLPLT 878

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT-YVKETKMAKQRSNHGV 858
             QLTNISGNLWGKTLQG  AQR EY LLH F +KKYI+PDK + ++KE K +K+R NHG 
Sbjct: 879  LQLTNISGNLWGKTLQGGSAQRNEYYLLHTFHSKKYILPDKISQHMKERKSSKRRINHGP 938

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED NV          D+ +  N   K K+GPAYAGGLVLEPKKGLYDKY+LLLDF+SLYP
Sbjct: 939  EDHNV----------DDPSKGN---KTKKGPAYAGGLVLEPKKGLYDKYVLLLDFSSLYP 985

Query: 919  SIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ 978
            SIIQEYNICFTT+ RS DG VP LPSS+T G+LP+L+++LV  R+ VK  MK  + LK +
Sbjct: 986  SIIQEYNICFTTIPRSEDG-VPRLPSSQTPGILPKLMEHLVSIRKCVKLKMKKETDLKCR 1044

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            +LDI+Q+ALKLTANS+YG LGFSNSRFYAKPLAELIT QGREIL+ TVDLVQN+LNLEVI
Sbjct: 1045 ELDIRQKALKLTANSLYGYLGFSNSRFYAKPLAELITLQGREILQRTVDLVQNHLNLEVI 1104

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMIHSG+DDI + KAI  KVIQEVNKKY+CL+I+LD +YKRMLLL+KKKYAA+K
Sbjct: 1105 YGDTDSIMIHSGLDDIKEVKAIGAKVIQEVNKKYRCLKIELDCIYKRMLLLRKKKYAAIK 1164

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +QFKDG   E IERKG+DMVRRDWSLLSKE+GD CL++IL   SCEDVVE+IHN LMK++
Sbjct: 1165 LQFKDGKICEDIERKGVDMVRRDWSLLSKEIGDLCLAKILYGGSCEDVVEAIHNELMKIK 1224

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E+MR+GQVALEKYVITK L+K PEAYPD+K+QPHVQVALR++Q GY  G SA DTVPYII
Sbjct: 1225 EEMRNGQVALEKYVITKALSKSPEAYPDSKSQPHVQVALRMRQRGYKKGFSAKDTVPYII 1284

Query: 1219 CCEQGTSS-GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            C EQG++S  SS GIA+RARHPDE+K  D +W++DIDYY SQQIH VVSRLCA I+GTSP
Sbjct: 1285 CYEQGSTSLASSAGIAERARHPDEVKSDDNRWLVDIDYYLSQQIHLVVSRLCAEIQGTSP 1344

Query: 1278 ERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCP 1337
            ERLA+CLGLDPSK++S+ + T  SDPS+SLL A   EE                      
Sbjct: 1345 ERLAECLGLDPSKYRSRSNVTTCSDPSTSLLCATSYEE---------------------- 1382

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
                      S K    E++  FW  LRCPKC  E    RISP MIANQVKRQ DGFVSM
Sbjct: 1383 ----------SNKSETEESDSIFWLKLRCPKCEAEGSTRRISPAMIANQVKRQIDGFVSM 1432

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            YYK +MMCDDE+CKYTT S N RL+GD ERGTVCPNYP C G L+RKYTEADLY+QL+YF
Sbjct: 1433 YYKDIMMCDDESCKYTTRSPNFRLLGDCERGTVCPNYPNCRGTLLRKYTEADLYRQLSYF 1492

Query: 1458 CHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515
            CH+LDTQ  +EKM++  +I +EK + KIRP V  AAS  + IR+RC YGW++L DIAI
Sbjct: 1493 CHILDTQCSLEKMDVGVRIQVEKAMTKIRPAVESAASMARSIRDRCGYGWLQLTDIAI 1550


>gi|297808923|ref|XP_002872345.1| hypothetical protein ARALYDRAFT_327035 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318182|gb|EFH48604.1| hypothetical protein ARALYDRAFT_327035 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1376

 Score = 1506 bits (3898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1204 (62%), Positives = 909/1204 (75%), Gaps = 70/1204 (5%)

Query: 320  LNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRC 379
            LN  + EF++  DGSL FYILDA+E+  GA+ G +YLFGKVK G T+ SCC VVK +QRC
Sbjct: 235  LNACQKEFDLGADGSLLFYILDAYEEPFGASKGIIYLFGKVKTGDTYKSCCAVVKYIQRC 294

Query: 380  VYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYI 439
            VYAIPN  +F + EIM LE++ +ESR+SP +FR KL ++A  LK EI+ QLL LNVSNY 
Sbjct: 295  VYAIPNDTIFPSHEIMTLEQEVKESRLSPESFRGKLHEMASKLKKEISQQLLQLNVSNYS 354

Query: 440  VSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVK 499
            ++ VKR YAF + ++PA E YVLKINYPFKDPPLP DLKGE+FC++LG+H+SALELF++K
Sbjct: 355  MALVKRNYAFDRPDVPAREQYVLKINYPFKDPPLPEDLKGESFCAVLGSHTSALELFILK 414

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+ GPSWL IS FS+    QRVSWCK E+TV+SPK I VS   +     PP  +TAINL
Sbjct: 415  RKIMGPSWLKISIFSATLKSQRVSWCKSEVTVESPKVITVSIPEEKTVH-PPAVITAINL 473

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            KT+ N++Q+++EIVSASV+C H AKID PM   E K+ G+LSHFTVVR  +G  +P+G+ 
Sbjct: 474  KTIVNEKQNISEIVSASVLCFHNAKIDVPMPGPERKRSGVLSHFTVVRNPEGTGYPIGWK 533

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
            KE  DRNSK G +VL  E+SERALLNRL +EL +LDSD+LVGHNISGFDLDVLL RAQ C
Sbjct: 534  KEVADRNSKNGCSVLSFENSERALLNRLFLELNELDSDILVGHNISGFDLDVLLQRAQAC 593

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS 739
             V SSMWSKIGRLKRS  PKL KG T FGSGA+PG+M CIAGRLLCD  LCSRDLL++  
Sbjct: 594  IVKSSMWSKIGRLKRSFKPKL-KGNTNFGSGATPGLMFCIAGRLLCDIDLCSRDLLKQ-- 650

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
                         DRKE+ P+D+ KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT
Sbjct: 651  -------------DRKEISPNDIPKMFQSSKTLVELIERGETDAWLSMELMFHLSVLPLT 697

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT-YVKETKMAKQRSNHGV 858
             QLTNISGNLWG TLQGARAQR EY LLH F ++KYI+PDK + ++KE K +K+R NHG 
Sbjct: 698  LQLTNISGNLWGNTLQGARAQRNEYYLLHTFHSRKYILPDKISQHMKERKSSKRRINHGP 757

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED NV+EL + D   +ND  +    K K+GPAYAGGLVLEPKKGLYDKY+LLLDF+SLYP
Sbjct: 758  EDHNVDEL-DVDLALENDQGN----KTKKGPAYAGGLVLEPKKGLYDKYVLLLDFSSLYP 812

Query: 919  SIIQEYNICFTTVER-----SPDGLVPHLPSSKTTGVLPE-LLKNLVQRRRMVKTWMKTA 972
            SIIQ       +V R       + LV   P  +     P  L+++LV  R+ VK  +K  
Sbjct: 813  SIIQVSRPNIISVSRLYHDQKTEFLV--YPIVRHLEFFPRYLMEHLVSIRKCVK--LKMN 868

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
              LK ++LDI+Q+ALKLTANS YG LGFSNSRFY           GREIL+ TVD VQN+
Sbjct: 869  DSLKCRELDIRQEALKLTANSFYGYLGFSNSRFY-----------GREILQRTVDFVQNH 917

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            LNLEVIYGDTDSIMIHSG+DDI + KAI  KVIQEVNKKY+CL+I+LDG+YKRMLLL+KK
Sbjct: 918  LNLEVIYGDTDSIMIHSGLDDIEEVKAIGAKVIQEVNKKYRCLKIELDGIYKRMLLLRKK 977

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            KYAA+K+QFKDG   E IERKG+DMVRRDWSLLSKE+GD CL++IL   SCEDVVE+IHN
Sbjct: 978  KYAAIKLQFKDGKICEEIERKGVDMVRRDWSLLSKEIGDVCLAKILCGGSCEDVVEAIHN 1037

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             LMK++E+MR+GQVALEKYVITK L+K PEAYPD+K+QPHVQVALR++Q GY  G SA D
Sbjct: 1038 ELMKIKEEMRNGQVALEKYVITKALSKSPEAYPDSKSQPHVQVALRMRQRGYKEGFSAKD 1097

Query: 1213 TVPYIICCEQGTSS-GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            TVPYIIC EQG  S  SSVGI +RARHP E+K  D +W++DIDYY +QQIHPVVSRLCA 
Sbjct: 1098 TVPYIICYEQGNPSLASSVGIVERARHPAEVKSEDSRWLVDIDYYLAQQIHPVVSRLCAE 1157

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCS 1331
            I+GTSPERLA+CLGLDPSK++S+ + T  SDPS+SLLFA  DEE                
Sbjct: 1158 IQGTSPERLAECLGLDPSKYRSRSNITTGSDPSTSLLFATSDEE---------------- 1201

Query: 1332 STFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
                     SS+C S+ +K    E++  FW    C KC  E    RISP MIANQVKRQ 
Sbjct: 1202 ---------SSVCASICKKSDTEESDSIFWLKRHCLKCEAEGSTRRISPAMIANQVKRQI 1252

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
            DGFVSMYYKG+MMCDDE+CKYTT S N RL+GD ERGTVCPNYP CNG  +RKYTEADLY
Sbjct: 1253 DGFVSMYYKGIMMCDDESCKYTTRSPNFRLLGDRERGTVCPNYPNCNGTFLRKYTEADLY 1312

Query: 1452 KQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLN 1511
            +QL+YFCH+LDTQ  +EKM++  KI +EK + KI P V   AS  + IR+RCAYGW++L 
Sbjct: 1313 RQLSYFCHILDTQYSLEKMDVGVKIQVEKAMTKIGPAVESTASMARSIRDRCAYGWLQLT 1372

Query: 1512 DIAI 1515
            DIA+
Sbjct: 1373 DIAV 1376



 Score =  154 bits (388), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 118/179 (65%), Gaps = 15/179 (8%)

Query: 16  GAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
           G+EAS+R EALERLKA R+GG R  +S G+ I+L+ PI+DTV ++EY++LV+RRREEARG
Sbjct: 7   GSEASSRKEALERLKATRKGGLR--NSGGFKIRLQKPIFDTVGDEEYESLVSRRREEARG 64

Query: 76  FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
           F+VDD  LGY DEG+EEDWS           S          R+++R  ++  +   K N
Sbjct: 65  FVVDDGNLGYVDEGEEEDWS---------KPSGGADSDDGGGRLQRRKTEKKKKKKNKAN 115

Query: 136 PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRR 194
            SL A A + GK RLS+M T ++    SK +KVK  ES++DEVLAE  PD+ DRER  +
Sbjct: 116 LSLKATATITGKGRLSSMFTCSSF---SKTDKVK-CESILDEVLAEVTPDDIDRERHHK 170


>gi|302784554|ref|XP_002974049.1| hypothetical protein SELMODRAFT_232193 [Selaginella moellendorffii]
 gi|300158381|gb|EFJ25004.1| hypothetical protein SELMODRAFT_232193 [Selaginella moellendorffii]
          Length = 1419

 Score = 1439 bits (3726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1513 (51%), Positives = 1015/1513 (67%), Gaps = 136/1513 (8%)

Query: 25   ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
            ALE+LK LR GG R  D+  + +K+E  I+D + E +Y  LVA+RR E++ F+VDDDGLG
Sbjct: 23   ALEQLKRLREGGGRRVDT--FELKVEEQIFDRLDEKDYALLVAKRRLESQDFVVDDDGLG 80

Query: 85   YGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAM 144
            Y D G+EE+W V  +P SSD+E  DG    KK    K+ +   ++  R+    L AAA++
Sbjct: 81   YADIGEEENWDVGAMPESSDEE--DGAAKKKKIADPKKKRDVPSRKERE----LMAAASL 134

Query: 145  MGKQRLSAMLTSTAM---FKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIK 201
            MGKQ +S+M  +       K SK      ++ V+D+VLA    D   RER+++       
Sbjct: 135  MGKQSVSSMFAAAGSGMSVKSSKARDFDGADQVLDDVLAAVGADSVHRERKKKH------ 188

Query: 202  SFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKR 261
                              T+  KE++  +            E+  E   +S  ST L   
Sbjct: 189  ----------------RQTSEAKEDTAKVEEDSLPPPPSTSEKQAE---DSAVSTSLV-- 227

Query: 262  DNFVEVKEKVKDEVNEDVKECKKL--NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG 319
                    +VK +V E  +E   L  NA  ST ++  + A               E   G
Sbjct: 228  -----ADAEVKIKVEEPSRELPPLPFNADHSTSENERIKAA--------------EDSFG 268

Query: 320  LNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRC 379
            L  + S    D+ G+L F+ LDA+E+  GAN GT++LFGKV+ G  + SCCV V+N+QRC
Sbjct: 269  LG-EMSALPADEMGNLSFFFLDAYEEAFGANSGTVFLFGKVQRGGKYVSCCVAVRNIQRC 327

Query: 380  VYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYI 439
            V+A+P   +F    +  LE++A  S +     + KLQ++A  +K E++ +L+ LNVS + 
Sbjct: 328  VFAVPGPSVFPDGLVNTLEQEATSSEL-----KLKLQEMAREMKMELSEKLMELNVSKFS 382

Query: 440  VSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVK 499
            + PVKR YAF + ++ +G +Y LK++YPFKDP LP DL+G +F SL GT +SALE FL+K
Sbjct: 383  MIPVKRSYAFDRMDVRSGAHYYLKLSYPFKDPTLPGDLRGAHFTSLFGTRTSALETFLIK 442

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            R++KGP WLSIS     P   ++SWCK E++VDSPKD+   S+ K   E+P + V +I+L
Sbjct: 443  RRIKGPCWLSISNPHQIPCSSQISWCKVEVSVDSPKDVANISTLKPAFEIPRLIVASISL 502

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            KTV N++Q++NEIVSASVV C + K+D PM  SEW K  ML HF++VRKLDGG++PMGF+
Sbjct: 503  KTVVNQKQNLNEIVSASVVFCERVKVDAPMPQSEWNKQEMLEHFSIVRKLDGGVYPMGFS 562

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             E +  N+K+G +VL CE SERALLN LMI+L++LD DVLVGHNISGFDLDVLLHR Q C
Sbjct: 563  SEVSLINNKSGCSVLSCEGSERALLNCLMIKLHQLDPDVLVGHNISGFDLDVLLHRLQAC 622

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS 739
            +VPS++WS++GRLKRS+MP+L  G   FG GA PG+MSC+AGRLLCDT+L SR+L++EVS
Sbjct: 623  KVPSNVWSRVGRLKRSQMPRLVGGGNNFGGGAGPGVMSCVAGRLLCDTYLSSRELVKEVS 682

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            Y+LTQL+K+QL K+RKE+ P ++  MFQT  +L ELI+ GETDAWLS+ LMFHLSVLPLT
Sbjct: 683  YTLTQLSKSQLGKERKEISPSEIPNMFQTSSTLFELIQSGETDAWLSLSLMFHLSVLPLT 742

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            RQLTNISGNLW KTLQGARAQRVEYLLLH F  +KYIVPDK +  ++ K  +++     +
Sbjct: 743  RQLTNISGNLWSKTLQGARAQRVEYLLLHEFYGRKYIVPDKVSASEKEKDNEKKRKKAQQ 802

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D + E  +  +A            K K+ PAY GGLVLEPKKGLYDKYILLLDFNSLYPS
Sbjct: 803  DEDFEPDSAVEA------------KNKKAPAYTGGLVLEPKKGLYDKYILLLDFNSLYPS 850

Query: 920  IIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQ 978
            IIQEYNICFTTVERS DG +  LP++   GVLP++LK LV RR+ VK W+ KT   LK Q
Sbjct: 851  IIQEYNICFTTVERSSDGSISSLPNADAPGVLPQVLKALVDRRKQVKQWLKKTTDVLKYQ 910

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q+DIQQQALKLTANSMYGCLGF NSRFYAK +AELIT QGREIL+STVDLVQN LNLEVI
Sbjct: 911  QMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELITSQGREILQSTVDLVQNVLNLEVI 970

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMI++G+DD+ KAK+IA +VI+EVNKKYK LEIDLDG++KRMLLLKKKKYA VK
Sbjct: 971  YGDTDSIMINTGLDDLLKAKSIAAQVIKEVNKKYKLLEIDLDGVFKRMLLLKKKKYACVK 1030

Query: 1099 VQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
            V+   DG   EVIE++GLD+VRRDWSLLSK+VG+F L QILSE S EDVV++IH+ L K+
Sbjct: 1031 VETSADGKLREVIEQRGLDIVRRDWSLLSKDVGNFILEQILSEGSREDVVDAIHDKLRKL 1090

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
            Q+DMR+G++ LEKYVITK+L+K PE YPD+KNQPHVQVALR KQ G+   C  GDT+PY+
Sbjct: 1091 QDDMRNGRIELEKYVITKSLSKRPEDYPDSKNQPHVQVALRRKQEGHK--CFPGDTIPYV 1148

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            ICC++G      V +A+RARHPDELK G G  +ID+DYY SQQIHPVVSRLC  IEGT P
Sbjct: 1149 ICCQEGV---LGVPLAERARHPDELKAGGGGCIIDVDYYLSQQIHPVVSRLCTPIEGTDP 1205

Query: 1278 ERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCP 1337
              +ADCLGLDPSK                        +RY  CE L L C SC++ +  P
Sbjct: 1206 SHIADCLGLDPSK------------------------DRYNRCEALELLCSSCAARYPFP 1241

Query: 1338 AVCSSICMSVSEKPSKPE-------------TEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
             V S +   V E  S+ E             T + F        C  +     +SP    
Sbjct: 1242 GV-SHVLTLVGEDQSEDENAGTQSLLTHQSGTSFIF--------CTSDEPLSIVSP---- 1288

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRK 1444
             QV  +A  F+  YY   M+CDDE C +T+    LR++GDAERG VCPN+PRCNGRLVR+
Sbjct: 1289 -QVLDRAAEFIQRYYDCWMVCDDEMCNHTSRDTILRIVGDAERGAVCPNFPRCNGRLVRQ 1347

Query: 1445 YTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCA 1504
            Y++ DLY QLT+F  LLD  R ++K+     +     +N +RP+V L A  ++ IR+RCA
Sbjct: 1348 YSQVDLYNQLTHFFRLLDVNRVLQKIP-ERNLKAAVAVNNLRPLVDLPAQEIKNIRDRCA 1406

Query: 1505 YGWVKLNDIAISV 1517
            Y WV+++ + +SV
Sbjct: 1407 YRWVQMSSLCVSV 1419


>gi|168053915|ref|XP_001779379.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669177|gb|EDQ55769.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1231

 Score = 1394 bits (3607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1235 (57%), Positives = 900/1235 (72%), Gaps = 30/1235 (2%)

Query: 301  AGWKEVSGGNM----VLD-----EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM 351
            A W  +S G      V+D     E    + C  +   +D +  LPF++LDAHE+  GAN 
Sbjct: 2    AAWHAISKGTAGNKSVVDIKKEEELTDQVICDGNSLPLDAESRLPFFLLDAHEEPYGANP 61

Query: 352  GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRIS-PMA 410
            G +Y+FGKV  G  + SCCVVV+NMQRCVY +P   +F ++ I +L + A   + +  +A
Sbjct: 62   GIIYMFGKVPVGGKYESCCVVVRNMQRCVYVVPTPSIFPSNSIAELGQLASSDQPAEKIA 121

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
            F+ KLQ+++  LK E+A +L++L+V+ + + PVKR YAF   E+P GENY +K+ YPFK+
Sbjct: 122  FKAKLQELSTDLKQEMAEKLMDLDVAQFSMYPVKRSYAFECPEVPTGENYFMKLMYPFKN 181

Query: 471  PPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEIT 530
            PPLP+DLKG NF  +LGTH+SALEL L+K+++KGP WLSI+      +  ++SWCK E+ 
Sbjct: 182  PPLPSDLKGRNFVKVLGTHTSALELLLIKKRIKGPCWLSIAAPQRVASSSQISWCKIEVN 241

Query: 531  VDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
            V+ PKD+ V+   K  + +PP+TV ++NLKTV N + +VNEI S SVV C + K+D PM 
Sbjct: 242  VEDPKDLMVALPGKGPSGIPPLTVASLNLKTVINYKLNVNEIASVSVVYCKRVKVDAPMP 301

Query: 591  ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
             +EW    MLSHF++VRKLDGGIFPMGF  E    NS +  N L  ESSERALLN LMI+
Sbjct: 302  LAEWNNRDMLSHFSIVRKLDGGIFPMGFASEVAKVNSNS-VNTLNAESSERALLNLLMIK 360

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
            L++LD+DVLVGHNISGFDLD+LLHR Q C+V S++WSKIGRLKRS+MP+L  G + FGSG
Sbjct: 361  LHQLDADVLVGHNISGFDLDILLHRLQACKVASNVWSKIGRLKRSQMPRLNGGGSTFGSG 420

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE 770
            ASPG ++CIAGRLLCDT+L SR+LLREVSYSLTQLAK+QL ++RKE+ P ++  M+    
Sbjct: 421  ASPGALTCIAGRLLCDTYLSSRELLREVSYSLTQLAKSQLGRERKELVPSEIPGMYGNSS 480

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
            SL+ELIE GETDAWLS+ LMFHLSVLPLTRQLTNISGNLW +TLQGARAQRVEYLLLH F
Sbjct: 481  SLLELIESGETDAWLSLGLMFHLSVLPLTRQLTNISGNLWSRTLQGARAQRVEYLLLHEF 540

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV----EELTNEDANFDNDTSHNDHRKGK 886
              +K+I+PDK +  ++ K   +R      DR+V    E+  N DA  DN T+    +KGK
Sbjct: 541  HIRKFILPDKLSQKEKEKEVGKRKASAQSDRDVPPDGEDGDNRDAGLDNATA----KKGK 596

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSK 946
            +GPAY GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN+CFTTVER+  G +P +P S 
Sbjct: 597  KGPAYLGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNVCFTTVERTVTGSIPSIPLSD 656

Query: 947  TTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              GVLP++LK LV+RR+ VK W+ KT   LK QQ DIQQQALKLTANSMYGCLGF+NSRF
Sbjct: 657  VPGVLPQVLKGLVERRKQVKGWLKKTTDILKYQQFDIQQQALKLTANSMYGCLGFTNSRF 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            YAKP+AELIT QGREIL+STVDLVQ +LNLEVIYGDTDSIMIHSG++D+A AK+IA KVI
Sbjct: 717  YAKPIAELITAQGREILQSTVDLVQTSLNLEVIYGDTDSIMIHSGLEDLAAAKSIAMKVI 776

Query: 1066 QEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSL 1124
            +EVNKKY+ LEIDLDG+YKRMLLLKKKKYAAVKVQ   DG   EVIE+KGLD+VRRDWS 
Sbjct: 777  REVNKKYRLLEIDLDGVYKRMLLLKKKKYAAVKVQSNSDGSVTEVIEQKGLDIVRRDWSS 836

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            LSKE+G++CL QILS  S E+VV++IH+ L K+QEDMR+GQ+ L+KYVITK+LTK PE Y
Sbjct: 837  LSKEIGNYCLEQILSGGSREEVVDAIHSQLRKLQEDMRNGQIELDKYVITKSLTKQPEDY 896

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
            PD KNQPHVQVALR KQSG+    S  DTVPYIIC ++G+    S GIA RARHPDE+K+
Sbjct: 897  PDGKNQPHVQVALRRKQSGHRI--SPNDTVPYIICIKKGSERPQSGGIADRARHPDEIKE 954

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
             +  W++D++YY SQQIHPVVSRLCA IEGT+   +ADCLGLD +K        +  D  
Sbjct: 955  ENSDWLVDVEYYISQQIHPVVSRLCAPIEGTNAGHIADCLGLDSAKVHIA---DLDCDVR 1011

Query: 1305 SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEK-PSKPETEYNFWRT 1363
               L     + RY+ CEPL L C  C   +  P V   + +  + K  S P         
Sbjct: 1012 VVHLSYFLLDVRYKLCEPLELVCAQCYKKYVFPGVTEILSLIATPKGTSSPAAACP--DP 1069

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
            L C +C +     R+SP M+ANQVK +AD F+  YY+  MMCDDE C + T ++ L+ +G
Sbjct: 1070 LMCDQCNQSGGLNRVSPAMLANQVKLRADEFIKRYYECWMMCDDEMCGHITRNITLQRVG 1129

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA-KIPLEKEL 1482
            DAE+GTVCP YPRCNGRL R+YTEA LY QLT F  LLD  R +EK+  S  ++  E++L
Sbjct: 1130 DAEKGTVCPLYPRCNGRLRRQYTEAHLYNQLTQFYRLLDVSRVLEKIVDSGERMAAEQKL 1189

Query: 1483 NKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
              +R    LA  T+  +R +CAY ++KL D+ ++V
Sbjct: 1190 APVRTATDLAVLTINNVRNKCAYRFIKLRDLCVTV 1224


>gi|302803376|ref|XP_002983441.1| hypothetical protein SELMODRAFT_234261 [Selaginella moellendorffii]
 gi|300148684|gb|EFJ15342.1| hypothetical protein SELMODRAFT_234261 [Selaginella moellendorffii]
          Length = 1386

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/1274 (54%), Positives = 897/1274 (70%), Gaps = 86/1274 (6%)

Query: 25   ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
            ALE+LK LR GG R  D+  + +K+E  I+D + E +Y  LVA+RR E++ F+VDDDGLG
Sbjct: 23   ALEQLKRLREGGGRRVDT--FELKVEEQIFDRLDEKDYALLVAKRRLESQDFVVDDDGLG 80

Query: 85   YGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAM 144
            Y D G+EE+W V  +P SSD+E  DG    KK    K+ +   ++  R+    L AAA++
Sbjct: 81   YADIGEEENWDVGAMPESSDEE--DGAAKKKKIADPKKKRDVPSRKERE----LMAAASL 134

Query: 145  MGKQRLSAMLTSTAM---FKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIK 201
            MGKQ +S+M  +       K SK      ++ V+D+VLA    D   RER+++       
Sbjct: 135  MGKQSVSSMFAAAGSGMSVKSSKARDFDGADQVLDDVLAAVGADSVHRERKKKH------ 188

Query: 202  SFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEES-KELKWESDNSTELTK 260
                              T+  KE++             V E+S       S+   E + 
Sbjct: 189  ----------------RQTSEAKEDT-----------AKVEEDSLPPPPSTSEKQAEDSA 221

Query: 261  RDNFVEVKEKVKDEVNEDVKECKKL--NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKS 318
               F+    +VK +V E  +E   L  NA  ST K+  + A               E  S
Sbjct: 222  VSTFLVADAEVKIKVEEPSQELPPLPFNADHSTSKNERIKAA--------------EDSS 267

Query: 319  GLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQR 378
            GL  +      D+ G+L F+ LDA+E+  GAN GT++LFGKV+ G  + SCCV V+N+QR
Sbjct: 268  GLG-EMPALPADEMGNLSFFFLDAYEEAFGANAGTVFLFGKVQRGGKYVSCCVAVRNIQR 326

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
            CV+A+P   +F    +  LE++A  S +     + KLQ++A  +K E++ +L+ LNVS +
Sbjct: 327  CVFAVPGPSVFPDGLVNTLEQEATSSEL-----KVKLQEMAREMKMELSEKLMELNVSKF 381

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
             + PVKR YAF + ++ +G +Y LK++YPFKDP LP DL+G +F S+ GT +SALE FL+
Sbjct: 382  SMIPVKRSYAFDRMDVRSGAHYYLKLSYPFKDPTLPGDLRGAHFTSVFGTRTSALETFLI 441

Query: 499  KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
            KR++KGP WLSIS     P   ++SWCK E++VDSPKD+   S+ K   E+P + V +I 
Sbjct: 442  KRRIKGPCWLSISNSHQIPCSSQISWCKVEVSVDSPKDVANISTLKPAFEIPRLIVASIC 501

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
            LKTV N++Q++NEIVSASVV C + K+D PM  SEW K  ML HF++VRKLDGG++PMGF
Sbjct: 502  LKTVVNQKQNLNEIVSASVVFCERVKVDAPMPQSEWNKQEMLEHFSIVRKLDGGVYPMGF 561

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            + E +  N+K+G +VL CE SERALLN LMI+L++LD DVLVGHNISGFDLDVLLHR Q 
Sbjct: 562  SSEVSLINNKSGCSVLSCEGSERALLNCLMIKLHQLDPDVLVGHNISGFDLDVLLHRLQA 621

Query: 679  CRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            C+VPS++WS++GRLKRS+MP+L  G   FG GA PG+MSC+AGRLLCDT+L SR+L++EV
Sbjct: 622  CKVPSNVWSRVGRLKRSQMPRLVGGGNNFGGGAGPGVMSCVAGRLLCDTYLSSRELVKEV 681

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            SY+LTQL+K+QL ++RKE+ P ++  MFQT  +L ELI+ GETDAWLS+ LMFHLSVLPL
Sbjct: 682  SYTLTQLSKSQLGRERKEISPSEIPNMFQTSSTLFELIQSGETDAWLSLSLMFHLSVLPL 741

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            TRQLTNISGNLW KTLQGARAQRVEYLLLH F  +KYIVPDK +  ++ K          
Sbjct: 742  TRQLTNISGNLWSKTLQGARAQRVEYLLLHEFYGRKYIVPDKVSASEKEK---------- 791

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ++    +   +D +F+ D++     K K+ PAY GGLVLEPKKGLYDKYILLLDFNSLYP
Sbjct: 792  DNEKKRKTAQQDEDFEPDSAV--EAKNKKAPAYTGGLVLEPKKGLYDKYILLLDFNSLYP 849

Query: 919  SIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
            SIIQEYNICFTTVERS DG +  LP++   GVLP++LK LV RR+ VK W+ KT   LK 
Sbjct: 850  SIIQEYNICFTTVERSSDGSISSLPNADAPGVLPQVLKALVDRRKQVKQWLKKTTDVLKY 909

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
            QQ+DIQQQALKLTANSMYGCLGF NSRFYAK +AELIT QGREIL+STVDLVQN LNLEV
Sbjct: 910  QQMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELITSQGREILQSTVDLVQNVLNLEV 969

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            IYGDTDSIMI++G+DD+ KAK+IA +VI+EVNKKYK LEIDLDG++KRMLLLKKKKYA V
Sbjct: 970  IYGDTDSIMINTGLDDLLKAKSIAAQVIKEVNKKYKLLEIDLDGVFKRMLLLKKKKYACV 1029

Query: 1098 KVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            KV+   DG   EVIE++GLD+VRRDWSLLSK+VG+F L QILSE S EDVV++IH+ L K
Sbjct: 1030 KVETSADGKLREVIEQRGLDIVRRDWSLLSKDVGNFILEQILSEGSREDVVDAIHDKLRK 1089

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            +Q+DMR+G++ LEKYVITK+L+K PE YPD+KNQPHVQVALR KQ G+   C  GDT+PY
Sbjct: 1090 LQDDMRNGRIELEKYVITKSLSKRPEDYPDSKNQPHVQVALRRKQEGHK--CFPGDTIPY 1147

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +ICC++G      V +A+RARHPDELK G G W+ID+DYY SQQIHPVVSRLC  IEGT 
Sbjct: 1148 VICCQEGV---LGVPLAERARHPDELKAGGGGWIIDVDYYLSQQIHPVVSRLCTPIEGTD 1204

Query: 1277 PERLADCLGLDPSK 1290
            P  +ADCLGLDPSK
Sbjct: 1205 PSHIADCLGLDPSK 1218



 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 91/136 (66%)

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRL 1441
            +++ QV  +A  F+  YY   M+CDDE C +T+    LR++GDAERG VCPN+PRCNGRL
Sbjct: 1251 IVSPQVLDRAAEFIQRYYDCWMVCDDEMCNHTSRDTILRIVGDAERGAVCPNFPRCNGRL 1310

Query: 1442 VRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRE 1501
            VR+Y++ DLY QLT+F  LLD  R ++K            +N +RP+V L A  ++ IR+
Sbjct: 1311 VRQYSQVDLYNQLTHFFRLLDVNRVLQKQIPERNSKAAVAVNNLRPLVDLPAQEIKNIRD 1370

Query: 1502 RCAYGWVKLNDIAISV 1517
            RCAY WV+++ + +SV
Sbjct: 1371 RCAYRWVQMSSLCVSV 1386


>gi|296082407|emb|CBI21412.3| unnamed protein product [Vitis vinifera]
          Length = 1561

 Score = 1189 bits (3076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/984 (65%), Positives = 739/984 (75%), Gaps = 102/984 (10%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           M DE+P+VAGRRRSRGAEA+AR++AL+RLKALRRGGRRS D VG+ IK+E+PIYDTV ED
Sbjct: 1   MADEEPIVAGRRRSRGAEATARSDALQRLKALRRGGRRS-DGVGFQIKVEDPIYDTVDED 59

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           EYD LVA+RREE RGFIVDD+G GYGDEGQEEDWS+AG+P SSD+   + +R  KK+  +
Sbjct: 60  EYDKLVAKRREEFRGFIVDDNGSGYGDEGQEEDWSLAGVPPSSDESDGEAERPKKKKTEK 119

Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVK--ESESVIDEV 178
           K    +           L+AAAAMMGKQRLS+M TS+ +FKKS+D+KVK    +S++D+V
Sbjct: 120 KDPPPKKPS-------PLSAAAAMMGKQRLSSMFTSS-VFKKSRDDKVKGLSCDSIVDDV 171

Query: 179 LAEFAPDEADRERRRRSVS---SNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQ 235
           +AEFAPDEADRERRRR  S   S  ++FV   ++K     ++      K         V 
Sbjct: 172 IAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPISIRPEPTK---------VT 222

Query: 236 IQNCDVVEESKE-----LKWESDNSTE----LTKRDNFVE-VKEKVKDEVNEDVK--ECK 283
           I + D V ++K+      K ++++  +    LTK D   E V + V+D+  + VK  E  
Sbjct: 223 IADGDSVSKTKDGKDLNSKMDAESIVQSHDPLTKVDAVEETVPDAVEDKSEQAVKRKEVH 282

Query: 284 KLNAKISTEKDPLLSA-TAGWKEV-SGGNMVLD-EGK---SGLNCQE-SEFEVDDDGSLP 336
            LNAKI  EKD  LSA TAGW+ V +GGN     EG+     LNC+E ++F +D DGSLP
Sbjct: 283 SLNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLP 342

Query: 337 FYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
           FYILDAHE+  GANMG LYLFGKVKAGS +HSCCVVVKNM+RCVYAIPN  +F  DEIM+
Sbjct: 343 FYILDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEIMR 402

Query: 397 LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
           LEKD E SR+SP A R KLQDVA GLK EIA QLLNLNVS + ++PVKR YAF +A+IP 
Sbjct: 403 LEKDIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADIPV 462

Query: 457 GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
           GENYVLKINYPFKDPPLPADLKGE FC+LLGTH SALELFL+KRK+ GP WLSISKFSSC
Sbjct: 463 GENYVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFSSC 522

Query: 517 PAPQRVSWCKYEITVDSPKDIRV-SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSA 575
           PAP+RVSWCK+E+TVD PKDIR+ +SSSK++AE+PPV VTAINLKT+ N++Q+VNEIVSA
Sbjct: 523 PAPERVSWCKFEVTVDCPKDIRILASSSKNIAEIPPVVVTAINLKTIINEKQNVNEIVSA 582

Query: 576 SVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLC 635
           SV+CCHK KID+PML SEWK+PG+LSHFTVVRKLDGGIFPMGF            S +L 
Sbjct: 583 SVICCHKVKIDSPMLPSEWKRPGVLSHFTVVRKLDGGIFPMGFQLNILFFGKIYHSKIL- 641

Query: 636 CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
               ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA+ C+VP  MWSKIGRLKR 
Sbjct: 642 ----ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAEACKVP--MWSKIGRLKRR 695

Query: 696 EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            MPKL +G TIFGSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLAKTQLNKDRK
Sbjct: 696 VMPKLTRGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRK 755

Query: 756 EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
           E+ P DV +MFQT ESL++LIEYGETDAWLSMELMFHLSVLPLTR LTNISGNLWGKTLQ
Sbjct: 756 EIAPQDVSRMFQTSESLVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQ 815

Query: 816 GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
           GARAQRVEYLLL                                                
Sbjct: 816 GARAQRVEYLLL------------------------------------------------ 827

Query: 876 DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
              H  H K K   AY+GGLVLEPK+GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP
Sbjct: 828 ---HEFHAK-KMNQAYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 883

Query: 936 DGLVPHLPSSKTTGVLPELLKNLV 959
           DG VP LPSSKTTGVLPE L  LV
Sbjct: 884 DGSVPRLPSSKTTGVLPESLALLV 907



 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/569 (81%), Positives = 519/569 (91%), Gaps = 5/569 (0%)

Query: 951  LPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            L  LLK LV+RR+ VK+ +KTASGLK+QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL
Sbjct: 996  LHTLLKKLVERRKTVKSRLKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1055

Query: 1011 AELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
            AELIT QGREIL+STVDLVQNNLNLEVIYGDTDSIMI++G+DDI KAKAIAGKVIQEVNK
Sbjct: 1056 AELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQEVNK 1115

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            KY+CLEIDLDGLYKRMLLLKKKKYAAVK+QFKDG PYEVIERKGLDMVRRDWSLLSKE+G
Sbjct: 1116 KYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELG 1175

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
            DF LSQILS  SCEDVVESIHNSLMKVQEDMR+G+VALEKY+ITK+LTKPPEAYPD KNQ
Sbjct: 1176 DFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKSLTKPPEAYPD-KNQ 1234

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS GIAQRARHPDELK+ +GKWM
Sbjct: 1235 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKWM 1294

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA 1310
            IDIDYY +QQIHPVVSRLCASI+GTSP RLADCLGLD SKFQS+ SE +++D S SLL A
Sbjct: 1295 IDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLSA 1354

Query: 1311 VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE--YNFWRTLRCPK 1368
              DEERYRGCE LILSCPSC  TFDCP + +S+  S++EK ++ + E   NFW+ LRCPK
Sbjct: 1355 --DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQVEESNNFWQRLRCPK 1412

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            CPEE + GR+SP +IANQVKRQADGF+SMYYKG MMCDDETCK+TT SLNLR+IGD+ERG
Sbjct: 1413 CPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSERG 1472

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPV 1488
            TVCPNYPRCNGRLVRKYTEADLYKQL+YFCH+LDT R IEKME+S +IP+EKEL +IRP+
Sbjct: 1473 TVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTVRCIEKMEVSTRIPIEKELARIRPL 1532

Query: 1489 VALAASTVQRIRERCAYGWVKLNDIAISV 1517
            V LAAST Q+IR+RCAYGWV+L+D+ ++V
Sbjct: 1533 VNLAASTTQKIRDRCAYGWVQLDDLTVTV 1561


>gi|357482861|ref|XP_003611717.1| DNA polymerase alpha catalytic subunit [Medicago truncatula]
 gi|355513052|gb|AES94675.1| DNA polymerase alpha catalytic subunit [Medicago truncatula]
          Length = 987

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1009 (59%), Positives = 716/1009 (70%), Gaps = 87/1009 (8%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           M D+      RR +RG +A+AR++ALE L++ R  G RS  +    I+LENPIYDT+ ED
Sbjct: 1   MADDDGSSRKRRPTRGPDATARSQALELLRSRRSNGPRS--TTTPQIRLENPIYDTIPED 58

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           EY ALVA R                    +EEDWS  G   SSD+E  DG+    +++ E
Sbjct: 59  EYTALVASR--------------------EEEDWSKTGFSLSSDEE-FDGESEKPQRKKE 97

Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
           K   +    +V      L+AAAAMMG  R+S+M TS A FKKS+D+KV   ES++D+VL 
Sbjct: 98  KDASQIKRPSVSSSAAKLSAAAAMMGGSRVSSMFTS-ANFKKSRDDKV--CESIVDDVLK 154

Query: 181 EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCD 240
           EFAPDE D+  RR+ V SN  S V+   +K    +   S  SV   S    NF +I N  
Sbjct: 155 EFAPDENDKISRRK-VQSNSSSVVNDARIKA---IPKPSAESVL-GSFASENFTKIGNRG 209

Query: 241 VVE-ESKELKWESDNSTEL-TKRDNFVEVKEKV----------------KDEVNEDV--- 279
             E ES  +  + DN + L     + VEV E +                +D V E V   
Sbjct: 210 NGEVESVRVNKDRDNGSRLGLVEKSEVEVNESLGNCEGGMVVEDNECGNEDLVEEKVAYV 269

Query: 280 ------------KECKKLNAKISTEK-DPLLSATAGWKEVSGGNMVLDEGKSG--LNCQE 324
                       KE   LNAK+S E  DP L ATAGW+    G     E       N Q+
Sbjct: 270 KDEEMEVKPVVKKEGFTLNAKVSEEAVDPKLCATAGWQAARSGGGGGGEVNVADTNNQQQ 329

Query: 325 SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIP 384
           +EF ++ +GSLPFYILDA+E+  GANMGTLYLFGKVK G+ + SCCVVVKNMQRCVYAIP
Sbjct: 330 TEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGTLYQSCCVVVKNMQRCVYAIP 389

Query: 385 NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
           + PL  T+E+++LEKD +ESRISP  FRKKLQD     K EIA  L++L VS++ ++PVK
Sbjct: 390 SHPLHSTNEMIQLEKDVQESRISPADFRKKLQDAVSDTKNEIAKHLVDLGVSSFSMAPVK 449

Query: 445 RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
           R+YAF + +IPAGENYV+KINY FKD  LP DLKG++FC+LLG  +SALELFL+KRK+KG
Sbjct: 450 RKYAFERTDIPAGENYVVKINYLFKDTALPVDLKGKSFCALLGARNSALELFLIKRKIKG 509

Query: 505 PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSS--SSKHVAEVPPVTVTAINLKTV 562
           PSWL +S FS+C A QRVSWCK+E+ VDSPKDIR SS  SSK     PPV VTAINLKT 
Sbjct: 510 PSWLQVSNFSTCSASQRVSWCKFEVIVDSPKDIRASSPSSSKITLVNPPVVVTAINLKTT 569

Query: 563 FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
            N++Q++NEIVSASVV C+  KIDTPMLASEWK+PGML+HFTV+RKLDG IFPMGFN E 
Sbjct: 570 INEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEV 629

Query: 623 TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
           TDRN KAGSNVLC ESSERALLNRLM++L+K+DSDVLVGHNISGFDLDVLLHR+Q CRVP
Sbjct: 630 TDRNIKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVP 689

Query: 683 SSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
           SSMWSK+GRL RS MPKL R+G+T FG GA P IMSC+AGRLLCDT+LCSRDLL+EVSYS
Sbjct: 690 SSMWSKLGRLNRSTMPKLDRRGKT-FGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYS 748

Query: 742 LTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL--IEYGETDAWLSMELMFHLSVLPLT 799
           LT LAKTQLN+ RKEV PH+V KMFQT +SLMEL  IEYGETDAWLSMELMF+LSVLPLT
Sbjct: 749 LTHLAKTQLNQSRKEVAPHEVPKMFQTAKSLMELVGIEYGETDAWLSMELMFYLSVLPLT 808

Query: 800 RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT-YVKETKMAKQRSNHGV 858
           RQLTN+SGNLWGKTLQGARAQRVEYLLLH F  KKYIVPDKF+ Y KETK+ K+R  HGV
Sbjct: 809 RQLTNLSGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGV 868

Query: 859 EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
           +D N ++    DAN+ ND S +DH+K K+  +YAGGLVLEPKKGLYDKYILLLDFNSLYP
Sbjct: 869 DDGNFDDADINDANYHNDASESDHKKNKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYP 928

Query: 919 SIIQ-------------EYNICFTTVERSPDGLVPHLPSSKTTGVLPEL 954
           SIIQ             EYNICFTTVERS D   P LPSSKTTGVLPE+
Sbjct: 929 SIIQVDNILFENVLLVPEYNICFTTVERSSDDSFPRLPSSKTTGVLPEV 977


>gi|300681495|emb|CBH32591.1| unnamed protein product [Triticum aestivum]
          Length = 1016

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1009 (58%), Positives = 740/1009 (73%), Gaps = 70/1009 (6%)

Query: 7    VVAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDAL 65
              +GRR R+RG EA AR+ ALERL+A+R GG RS  +V   +++E+PIYDTVAE++Y AL
Sbjct: 32   AASGRRTRTRGTEAVARSAALERLRAIRGGGARSAAAV--QVRMEDPIYDTVAEEDYAAL 89

Query: 66   VARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
            VARRR++A  FI+DDDGLGY D+G+EEDW+   LPSSSD+ S  G+    ++R + R   
Sbjct: 90   VARRRKDAGAFIIDDDGLGYVDDGREEDWTHRALPSSSDEGS-GGEEGAPRKRKQPRPP- 147

Query: 126  ENNQNVRKPN-----PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVID 176
               Q  R P       SL+AA AM GK RLSAM TS+  FKK   ++ K S    +S++D
Sbjct: 148  ---QAKRPPQQSAAAASLSAAGAMTGKDRLSAMFTSS-FFKKPGSDRTKGSSLAADSIVD 203

Query: 177  EVLAEFAPDEADRERRRRSV---SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNF 233
            +V+AEFAPDE DRE RRR V   S+   +   V  +K   Q   ++   V+ ++    + 
Sbjct: 204  DVIAEFAPDENDREERRRRVGRVSAPTPTPAPVAQIKA-IQAAVHAEMEVRSDNGFEPDV 262

Query: 234  VQIQNCDV-------------VEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK 280
            V     D+             VE   +L+    +S EL   +   +  E++K E N +VK
Sbjct: 263  VSGHGNDMEVELQPEVELKPDVEMQPKLEAAPGSSPELVDEN---KSSEELKLEANGEVK 319

Query: 281  --ECKKLNAKI---STEKDPLLSATAGWKEVS--------------GGNMVLDEGKSGLN 321
              +  +LNAKI    T    +LSATAGW ++                GN  +DE      
Sbjct: 320  IEKVHRLNAKIKAEGTRNGDMLSATAGWMKICGEGENAGGEGEVSVNGNTDVDES----- 374

Query: 322  CQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVY 381
               SEFE+ D G+LPFY+LDA+E+  G N GT+YLFGKV  G   HSCCVVVKNMQRC+Y
Sbjct: 375  ---SEFELKD-GALPFYVLDAYEEPFGINSGTVYLFGKVVIGKRFHSCCVVVKNMQRCIY 430

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
            AIP+  +F  D I ++EK++  S  SP + R  L +++ GLK E+A +L +LNVSN++++
Sbjct: 431  AIPSSSVFPRDTISRIEKNSTSSDASP-SLRATLHELSSGLKIEVAEKLSDLNVSNFVMT 489

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            PVKR YAF + ++P GE YVLKINYP+KDP +PADL+GE+F +LLGT++SALELFL+KRK
Sbjct: 490  PVKRNYAFERTDVPIGEQYVLKINYPYKDPAVPADLRGEHFHALLGTNNSALELFLIKRK 549

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            +KGPSWLSISKF +CP+ QRVSWCK+E+TVDSPKDI V  +S  + EVPPV V A+NLKT
Sbjct: 550  IKGPSWLSISKFVACPSTQRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKT 608

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            + N++ +V+EIVSASV+CCH+ KIDTPM + +W+K G +SHFTV+RKL+G IFP+G  KE
Sbjct: 609  IINEKHNVHEIVSASVICCHQVKIDTPMRSEDWQKRGTISHFTVMRKLEGSIFPIGLTKE 668

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
            A+DRN KAGSNVL  ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+V
Sbjct: 669  ASDRNQKAGSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKV 728

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
            PSSMWSKIGRL+RS MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLLREVSYS
Sbjct: 729  PSSMWSKIGRLRRSVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLREVSYS 788

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
            LTQLA+TQL KDR+EV PHD+  MFQ+  +L++L+EYGETDAWLS+ELMFHLSVLPLTRQ
Sbjct: 789  LTQLAETQLKKDRREVSPHDIPPMFQSSGTLLKLVEYGETDAWLSLELMFHLSVLPLTRQ 848

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV-KETKMAKQRSNHGVED 860
            LTNISGNLWGKTLQGARAQRVEYLLLH+F AKK+I+PDKF    KE   AK++ N   E 
Sbjct: 849  LTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIIPDKFAARNKELNSAKRKLNADTEG 908

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
             N  +    D + D++  + D  K ++GP+YAGGLVLEPKKGLYDKYILLLDFNSLYPSI
Sbjct: 909  GNAAD-GAADPSIDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 967

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            IQE+NICFTTVERS DG +P+LP+SK TGVLPELL++LV+RRRMVK+W+
Sbjct: 968  IQEFNICFTTVERSSDGNLPNLPNSKATGVLPELLQSLVERRRMVKSWL 1016


>gi|384252932|gb|EIE26407.1| hypothetical protein COCSUDRAFT_52325 [Coccomyxa subellipsoidea
            C-169]
          Length = 1243

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1201 (44%), Positives = 743/1201 (61%), Gaps = 54/1201 (4%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            DG+LPF++LDAHE+   A  GT+YLFGKV  G  H SCC V++   RC++ +P    F  
Sbjct: 70   DGTLPFFLLDAHEE--AATPGTVYLFGKVPNGGQHQSCCAVLEGCMRCIFFVPQPGTFTG 127

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
             E+ +LE +A  +  +     + L + A  LK E+   L    +  +++ PV+R YAF  
Sbjct: 128  AELTRLEAEAAANPGAKGPLLRHLHEQAAALKAEVRAVLAEHGIDKFVIKPVRRNYAFEL 187

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
              +P GE +VLK+ Y    P LP  L+GE+F  + G   S LE  L+KR++ GPSW+S+S
Sbjct: 188  DSVPHGEQWVLKVRYSAAKPSLPNGLEGEHFVGVFGAQQSVLESVLLKRRIMGPSWISLS 247

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
              +   A ++VSWCK E+ V+  K+  VSS      E PP+ V A+NLKT  + + + NE
Sbjct: 248  CPTRVDASKQVSWCKLEVKVEGHKN--VSSKCAGQQEPPPLIVAALNLKTSLHPQANTNE 305

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE-----ATDRN 626
            +V+ASVV      +D P+  + W     L HF+V+RKLDG  FP GF  +     A++  
Sbjct: 306  VVAASVVYLPAVNLDRPLSKAAWNSSRSLRHFSVLRKLDGQPFPAGFEAKVQAVNASEMG 365

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             + G  +L  ++SER+LL  L+  L  LD+DVLVGHNI+ FDLDVLLHR Q  +VP   W
Sbjct: 366  RRNGGTMLSAQASERSLLMNLLARLRALDADVLVGHNIAAFDLDVLLHRLQHHKVPQ--W 423

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S++GRL+RS  P L  G   FG GA PG+M+ +AGRL+CDT+L +R+LL EV Y++  LA
Sbjct: 424  SRVGRLRRSTFPSLGGGGGSFGGGAGPGLMTAMAGRLICDTYLGARELLHEVDYTMATLA 483

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            +  L + R ++   DV   ++    LMEL+++ E+DAWL++ L  HL++LPL+RQL+ +S
Sbjct: 484  RIHLGQTRSDLAAADVPGKYEAAPKLMELVQHTESDAWLALSLAMHLNLLPLSRQLSCLS 543

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G+LW +TLQG RAQR+E LLLH F A+K+++PDK +  +  ++A+++      D      
Sbjct: 544  GSLWSRTLQGQRAQRIEMLLLHEFYARKFLLPDKLSGRERERLARRQHAAAHAD------ 597

Query: 867  TNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                   D +        GK+G A YAGGLVLEPKKGLY+  +LLLDFNSLYPSIIQEYN
Sbjct: 598  -------DGEAFEEVKAGGKKGKAQYAGGLVLEPKKGLYNSIVLLLDFNSLYPSIIQEYN 650

Query: 926  ICFTTVERSPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQ 983
            ICFTTV R  DG +  LP  S    VLP++++ LVQRRR VK+ +     G++ QQLDI+
Sbjct: 651  ICFTTVRRPKDGSIAPLPEPSHDLAVLPKVIRGLVQRRREVKSLLANERDGVRRQQLDIR 710

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            QQALKLTANSMYGCLGFS SRF+A+PLAEL+T QGR+IL+STVDLVQ+++ LEVIYGDTD
Sbjct: 711  QQALKLTANSMYGCLGFSASRFFARPLAELVTAQGRDILQSTVDLVQSSVGLEVIYGDTD 770

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFK 1102
            SIM+ + +    +A+A+  +V +EVNK+YK LEI+LD +YK MLLLKKKKYAA+K+ +  
Sbjct: 771  SIMVRTDVAKEEEARAMGARVKREVNKRYKLLEIELDAMYKCMLLLKKKKYAAIKLDRDA 830

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
             G   EV E KGLDMVRRDW  L+K+ G++ L +ILS R CEDVV +IH  L +V+E + 
Sbjct: 831  AGRTVEVKEAKGLDMVRRDWCALAKDCGNYALDEILSGRPCEDVVSAIHARLRQVREKVD 890

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            +G V L+K+VI K LTK PE YPDAKNQPHVQVALR   +    G   G+TVPYIIC E 
Sbjct: 891  AGAVTLDKFVIHKQLTKRPEDYPDAKNQPHVQVALRRAAAHKREGTKQGETVPYIICIEV 950

Query: 1223 GTSS----GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
              +     G + G+A+RA H +EL   +    +D+ YY + Q+HPVVSRLCA IEGT   
Sbjct: 951  DEAGQPKDGGAGGLAERAYHREEL-AANPALRVDVQYYLANQVHPVVSRLCAPIEGTDAA 1009

Query: 1279 RLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGD---EERYRGCEPLILSCPSCSST 1333
            RLADCLGLDP+K+   +     M      +L+ +      + RY+ C+PL L+    +  
Sbjct: 1010 RLADCLGLDPAKYHAAAAAGSGMRDALEDALIASTATLDCDARYKDCDPLWLTSADGTR- 1068

Query: 1334 FDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
               P V     +S    P       +   T              +S   +ANQV+ +A  
Sbjct: 1069 --FPFVGVQDVLSGGVAPGDAFAPPDAAAT-----------GSGLSAAQVANQVRLRARE 1115

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             V+ YY+G ++ DDE     T ++ LR  GDA  G   PN     G +    +EA LY Q
Sbjct: 1116 AVAKYYEGSLVSDDELMPVNTRNVCLRAQGDAAPGMASPNVASA-GHMAAAMSEAALYTQ 1174

Query: 1454 LTYFCHLLDTQRGIEKM-EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
            L++F  LLD    + ++ + + ++   + L  IR  +      V+++R RCAY WV L  
Sbjct: 1175 LSHFHRLLDPSLALARLKDDTERLEATRRLAPIREALEAGRKAVEQLRNRCAYRWVSLGS 1234

Query: 1513 I 1513
            +
Sbjct: 1235 L 1235


>gi|255078890|ref|XP_002503025.1| predicted protein [Micromonas sp. RCC299]
 gi|226518291|gb|ACO64283.1| predicted protein [Micromonas sp. RCC299]
          Length = 1643

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1316 (44%), Positives = 772/1316 (58%), Gaps = 126/1316 (9%)

Query: 296  LLSATAGWKEV-----SGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGAN 350
            L  A  GW  V     +GG++ +D   + L   +    +D D +LPF+ +DAHE +  A+
Sbjct: 349  LDGAADGWAAVFDDSTAGGDVQVDAAPAQL--ADGSLPLDADDTLPFFFVDAHEDI--AH 404

Query: 351  MGTLYLFGKV------------KAGSTHHSCCVVVKNMQRCVYAIPNGPLF--QTDEIMK 396
             GT++LFG+V             A +   S C VV  MQRC++ +P   +F  Q  EI  
Sbjct: 405  PGTVFLFGRVPVDTSAPTSAPASAPTETVSACAVVTGMQRCMFVVPRPDVFDDQNGEIES 464

Query: 397  LEKDAEESRISPM---------AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
            LE+ AEE+              A  + LQ  A  +K E+   LL   + ++ + PVKR Y
Sbjct: 465  LERAAEEAAKGADDAAAKKARGALLRTLQTRAKDVKDEVREILLARGIESFTMKPVKRSY 524

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
             F + +IP G  YVLK+  P   P LP DLKG +F ++LG  + +LE  ++K KV GPSW
Sbjct: 525  CFERDDIPRGCQYVLKVRCPATGPALPVDLKGRHFVAVLGASTPSLEHLVIKSKVMGPSW 584

Query: 508  LSISKFSSCPAPQRVSWCKYEITVD-SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            +SI      P+ Q+ SWCK E+ VD   K +R  ++S    + P +TV A+NLKTV N R
Sbjct: 585  ISIHGARLVPSGQQKSWCKLEVAVDRGHKSVRQPATSLPHRDPPTLTVAALNLKTVVNHR 644

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +VNEI SASVV     K D P     W     L HF+VVR+LDG  FP G++      N
Sbjct: 645  ANVNEIASASVVYARNVKCDQPT--PTWNSLDHLRHFSVVRRLDGVSFPPGWDAAVAKEN 702

Query: 627  S------KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
            +      + GS VL  +SSER LL+ L+ +L +LD+DVLVGHNI+GFDLDVLLHR Q  +
Sbjct: 703  AEHPVAKRTGSVVLSSQSSERGLLSFLLAKLQQLDADVLVGHNIAGFDLDVLLHRLQANK 762

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
            VP   WS++GRLKR+  P L  G   +G GA  G +SC+AGRLL DT+L +RD ++EVSY
Sbjct: 763  VPH--WSRVGRLKRTRFPNLGGGGNAYGGGAGLGALSCLAGRLLADTYLSARDFVKEVSY 820

Query: 741  SLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            +LT LAK QL + R EV   D+   F    +LM L +  E+DAWLS+ LMFHLSVLPLTR
Sbjct: 821  TLTALAKNQLGRHRVEVAATDIPGKFSDASALMGLAKSTESDAWLSLGLMFHLSVLPLTR 880

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            QL+NI+GNLW KTLQ  RAQRVEYLLLH F A+KY++PDK T  KE K  +   N   + 
Sbjct: 881  QLSNIAGNLWSKTLQHTRAQRVEYLLLHEFHARKYLLPDKLT-AKERKFGRGYQNADADL 939

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
               +   +               K + GPAYAGGLVLEPKKGLYDKY+L++DFNSLYPSI
Sbjct: 940  DGGDFDGDGGVKAG---------KKRGGPAYAGGLVLEPKKGLYDKYVLMMDFNSLYPSI 990

Query: 921  IQEYNICFTTVERSPDGLVPH--------LPSSK--TTGVLPELLKNLVQRRRMVKTWMK 970
            IQEYNICFTTV +                LP+    T  VLP+++K LV RRR VK  +K
Sbjct: 991  IQEYNICFTTVAQPKADPDDPAAAPPAPTLPTDADGTKVVLPQVIKKLVDRRREVKNMIK 1050

Query: 971  TA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
            T  +  + +QLDI+Q ALKLTANSMYGCLGF+ SRFYAKPLAEL+T QGREIL+STVDL 
Sbjct: 1051 TERNAARAKQLDIRQMALKLTANSMYGCLGFAASRFYAKPLAELVTLQGREILQSTVDLA 1110

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            Q NL   VIYGDTDSIMI++   +IA+   +A +  +  +K++K LEI++DGLYK MLLL
Sbjct: 1111 QGNLGRNVIYGDTDSIMINTESTNIAEVVDMAKQFKKLSDKRFKVLEIEMDGLYKSMLLL 1170

Query: 1090 KKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            KKKKYAA+ V Q  DG    VIE+KGLD+VRRDWS L+KE G+  L +ILS    EDVVE
Sbjct: 1171 KKKKYAALMVKQLPDGSYTTVIEQKGLDIVRRDWSPLAKEQGNLALKEILSGNPTEDVVE 1230

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             IH +L K +ED+ +G V ++K++ITK LTK PE YPDA NQ HVQVALRL+ +G   G 
Sbjct: 1231 GIHETLRKCREDLVNGAVTMDKFIITKQLTKRPEDYPDAANQAHVQVALRLRAAGKREGV 1290

Query: 1209 SAGDTVPYIICCEQGTS-----SGSSV-------GIAQRARHPDELKKGDGKWMIDIDYY 1256
            + G+TVPY+I  +   S     SG +V       G+A RA HPDE+   +    +D+ YY
Sbjct: 1291 NQGETVPYVIALKTDASAEEIASGRAVNQSSGGKGLADRAYHPDEVSAENSGLKLDLHYY 1350

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLF----AVG 1312
             +QQ+HPVVSRLC  IEGT    +A+CLGLDPSKF  +       D     L     A+ 
Sbjct: 1351 LTQQVHPVVSRLCQPIEGTDAAHIANCLGLDPSKFHHQVVTANGGDEYDDDLLAPAAALD 1410

Query: 1313 DEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPS-KPETEYNFWRTLRCPKCPE 1371
            D ER++ C+PL+L   +    F+ P V + +   V+   S  P  + N        K  E
Sbjct: 1411 DSERFKRCKPLVLR--TAGGEFEFPGVDAILAGEVAPDASLAPAPKTNDGAPDAGGK--E 1466

Query: 1372 EVEAGRISPGM------------------------IANQVKRQADGFVSMYYKGLMMCDD 1407
               AG  +PG+                        +ANQV+      ++ YY   +  DD
Sbjct: 1467 NAGAGAANPGVNPPNAGKLAGVASVTAATPLGAHALANQVRLAVRDSINSYYSTTLRSDD 1526

Query: 1408 ETCKYTTCSLNLRLIGD--AERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR 1465
            E     T +++LR+  D  AE GT+ P  P+C G + +  TEA LY QL +F  LLD + 
Sbjct: 1527 ELAPSETRNVSLRVGADATAEPGTL-PADPKCQGVMQKTTTEAALYTQLVHFRRLLDYRG 1585

Query: 1466 GIEKMEISAKIPLEKELNKIR--------PVVALAASTVQRIRERCAYGWVKLNDI 1513
             + +M      P +++  + R          +  AA+ V+R   R AY WV L  +
Sbjct: 1586 ALARMP-----PKDRDAARARMEASPGTCAALDAAANEVERTLRRSAYRWVNLRTL 1636



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVA 97
          +YD V ++EY  +V +RR+E  GFIV +DG  Y D G+E+DW+ A
Sbjct: 46 VYDVVTDEEYAKIVNKRRQEYGGFIVGEDGDDYVDLGEEDDWTKA 90


>gi|303278858|ref|XP_003058722.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459882|gb|EEH57177.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1439

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1274 (43%), Positives = 752/1274 (59%), Gaps = 94/1274 (7%)

Query: 309  GNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTH 366
            G  V+++        +    +D D +LPF+ILDAHE +S    GT++LFGKV   AG  +
Sbjct: 177  GGAVVEDAAPAQIAADGSLPLDPDATLPFFILDAHEDISVP--GTVFLFGKVPVNAGEVN 234

Query: 367  HSC---CVVVKNMQRCVYAIPNGPLFQ--TDEIMKLEKDAEESRISPMA---------FR 412
              C   C VV NMQRC +A+P    F    +EI  LE  A  +     A           
Sbjct: 235  GECVSACAVVPNMQRCAFAVPTPETFADPENEISDLEDAAAAAAAGDDAAAAKKAKGALL 294

Query: 413  KKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP 472
            + LQ     +K E+   LL   +  + + PVKR Y F + +IP G  YV+K+ +P     
Sbjct: 295  RCLQGRCADVKNELREMLLARGIEQFTMKPVKRSYCFEKDDIPRGSQYVIKVRFPATYAA 354

Query: 473  LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            LP D++G +F ++LGT +  LE  ++K ++ GPSW+++   +      + S CK E+ + 
Sbjct: 355  LPGDVRGAHFITMLGTQTPMLEHLMIKSRIMGPSWIALHGANVVDVSAQRSHCKLEVVLP 414

Query: 533  SP-KDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
            S  K +R ++++    + P +TV A+NLKTV N RQ+VNEI SASVV    AKID P   
Sbjct: 415  SGHKSVRPTATNGLSRDPPSLTVAALNLKTVVNHRQNVNEIASASVVYVRAAKIDGPT-- 472

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS------KAGSNVLCCESSERALLN 645
              W     + HF+VVR+LDG   P G+++     N+      +  S+VL   +SERALL 
Sbjct: 473  PGWNSAASMRHFSVVRRLDGVSMPPGWDQVVAKENAEHPVAKRTKSSVLTSTASERALLT 532

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
             L+  ++ LD+DV+VGHNI+GFDLDVLLHR Q  +VP   WS+IGRLKRS  P L  G  
Sbjct: 533  VLIGRMHALDADVIVGHNIAGFDLDVLLHRLQANKVPQ--WSRIGRLKRSRFPNLGGGGN 590

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
             FG GA  G +SC+AGRLL DT+L +RD ++EVSY+L+ LA  QL   R E+   ++   
Sbjct: 591  SFGGGAGLGALSCLAGRLLADTYLSARDFVKEVSYTLSSLASNQLKMTRTEIASTEIPGK 650

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            F +   L+ L +  E DAWLS+ LMFHLSVLPLTRQL+NI+GNLW KTLQ  RA RVE+L
Sbjct: 651  FSSAAGLLSLTKATEADAWLSLGLMFHLSVLPLTRQLSNIAGNLWAKTLQHTRATRVEHL 710

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            LLH F A+KY++PD+ +  KE K  +        D   +    +                
Sbjct: 711  LLHEFHARKYLMPDRLS-AKERKFGRGGGGGDDGDGEGDGEGVKAGKK------------ 757

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------SPDGLV 939
            K GP+YAGGLVLEPKKGLYDK++L+LDFNSLYPSIIQEYNICFTTV R       P G+ 
Sbjct: 758  KGGPSYAGGLVLEPKKGLYDKFVLMLDFNSLYPSIIQEYNICFTTVARPKADPNDPAGVA 817

Query: 940  PHL---------PSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKL 989
            P           P    + VLP++++ LVQRRR VK  +KT  +  + QQLDI+QQALKL
Sbjct: 818  PAPQLPEPCAGGPGGPNSAVLPQVIRKLVQRRREVKNMIKTEKNAARRQQLDIRQQALKL 877

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLGF+ SRFYAKPLAEL+T QGREIL+STVDL Q  L ++VIYGDTDSIMI++
Sbjct: 878  TANSMYGCLGFAASRFYAKPLAELVTLQGREILQSTVDLAQGTLGMDVIYGDTDSIMINT 937

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK---DGMP 1106
               ++ +  AI   + +EVNK+YK LEI++DG++K MLLLKKKKYAA+ V+      G  
Sbjct: 938  KSTNLQEVSAIGAALKKEVNKRYKLLEIEMDGIFKSMLLLKKKKYAALMVKPAADGSGGF 997

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
              V+E+KGLD+VRRDWS L+K  G+  L  ILS R  EDVVE IH SL K +ED+ +G V
Sbjct: 998  TTVMEQKGLDIVRRDWSPLAKRQGNHALELILSGRPAEDVVEDIHESLRKCREDLVNGVV 1057

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
             +++++ITK LTK PE YPDA NQ HVQVALRL+ +G   G + G+TVPY+I  +  +++
Sbjct: 1058 TMDQFIITKQLTKRPEDYPDAANQAHVQVALRLRDAGKREGVNQGETVPYVIAVKTDSAT 1117

Query: 1227 GSSV-----------GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
               +           G+A RA HPDE+        +D+ YY +QQ+HPVVSRLC  IEGT
Sbjct: 1118 AEDIASGRTGATGGKGLADRAYHPDEVAAEGSGLKLDLHYYLTQQVHPVVSRLCQPIEGT 1177

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVG----DEERYRGCEPLILSCPSCS 1331
               R+ADCLGLD SKF ++     +SD     L A G    DEER++ C PL+L   + +
Sbjct: 1178 DAARIADCLGLDASKFHAQVVGHNASDERDDDLLAPGMNLDDEERFKRCAPLVLK--TAA 1235

Query: 1332 STFDCPAVCSSICMSV------SEKPSKPETEYNFWRTLRCPKCPEEVEAGR-------- 1377
              F+   V + +   V      +  P               P   +++ AG         
Sbjct: 1236 GAFEFKGVGAILSGEVDGDAALAPPPPAAAAAKENAAPAPPPPPADKLSAGSSASATTTP 1295

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC 1437
            ++P  +ANQV       V+ YY   +  DDE     T +++LR+ G AE GT+ P  P+C
Sbjct: 1296 LTPAALANQVALATRAAVAAYYAASLRSDDELAPCETRNVSLRVDGAAEPGTL-PADPKC 1354

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN-KIRPVVALAASTV 1496
             G + +  TEADLY QL +F  LL  +  + ++    ++  E  +    R  +  A + +
Sbjct: 1355 QGVMHKTTTEADLYTQLMHFKRLLCVEDAVRRLPEKQRLAAEARIAPTTREALRAATNAL 1414

Query: 1497 QRIRERCAYGWVKL 1510
            +R  ER AY W+ L
Sbjct: 1415 ERTLERSAYRWIDL 1428


>gi|412991410|emb|CCO16255.1| DNA polymerase alpha catalytic subunit [Bathycoccus prasinos]
          Length = 1670

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1311 (41%), Positives = 749/1311 (57%), Gaps = 150/1311 (11%)

Query: 324  ESEFEVDD-DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH-----------SCCV 371
            +S   VDD D +LPFY LDA E +     GT++LFGKV                  S C 
Sbjct: 386  DSGLPVDDFDKTLPFYFLDAQEDIGSP--GTVFLFGKVPTRRDPQTNVLDPSLGTVSSCA 443

Query: 372  VVKNMQRCVYAIPN-----GPLFQTDEIMKLEKDA---EESRISPMAFRKKLQDVALGLK 423
            VV NMQRCV+ +P        L +++E+  LE+ A   + S+   +A  K LQ     +K
Sbjct: 444  VVNNMQRCVFVVPRLEFTPQSLDESNELKTLEEKANAKDASKADKVALLKWLQVKTKPVK 503

Query: 424  TEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFC 483
             E+   +    V  Y + PV R+Y F + +IP+G  YV+K+ Y + +  LP+D+KGE FC
Sbjct: 504  DELKKIMSERGVDQYTMKPVYRKYCFERNDIPSGGQYVIKLKYSYLNSALPSDIKGETFC 563

Query: 484  SLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ------RVSWCKYEITV-DSPKD 536
              LGT ++ALE  LVK K+ GPSWL++      P           SWCK E+ + +  K 
Sbjct: 564  GALGTQTNALEHLLVKSKIMGPSWLALHNAEIVPQATLKDKEAMKSWCKLEVNLQNGHKS 623

Query: 537  IRVSSSSKHVA--------EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTP 588
            +R  +     A        + P V V A+ L+TV N + + NEI SASVV     ++D  
Sbjct: 624  VRNPTVEAIEALGLGGQQRDPPTVIVAALKLQTVVNHKTNANEICSASVVYLQDVRVDVG 683

Query: 589  M--------LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS------KAGSNVL 634
                     +  EW+K     HF++VRKL GG +P G+ +   + N       +  S VL
Sbjct: 684  TDCRAKVTDMPCEWEKKA--RHFSLVRKLSGGNWPSGWEQHVANENKTNNVAKRTKSIVL 741

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
              ++ ER LL+ L+  L ++D+DV+ GHN++GFD+DVLL+R +  +V  + WS+IGRLKR
Sbjct: 742  SAQADERGLLSILLARLSQIDADVICGHNVAGFDVDVLLNRLRENKV--AHWSRIGRLKR 799

Query: 695  SEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            +  P L    +  FG GAS G +SC++GRLL DT+L +RDLL+EVSY+LT L KTQ +++
Sbjct: 800  TRFPNLSGGNQGSFGGGASIGALSCMSGRLLADTYLSARDLLKEVSYTLTNLMKTQFDEN 859

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            R E+   DV   F + ++L +L +  +TDA+ S+ LM HL  LPLTRQL+NI+GN W KT
Sbjct: 860  RAEIPHQDVPLQFNSTQTLWQLTKNSQTDAFYSLWLMLHLQALPLTRQLSNIAGNTWSKT 919

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   RAQRVE+L LH F  +KY+VPD+ +  ++ ++    + +G  D++V++        
Sbjct: 920  LGHTRAQRVEFLFLHEFHKRKYMVPDRLSAKEKRRVQAAEAKNGNGDKDVDD-------- 971

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                        K+GP Y+GGLVLEPKKGLYDKY+L+LDFNSLYPSIIQEY+ICFTTV+R
Sbjct: 972  ------------KKGPQYSGGLVLEPKKGLYDKYVLMLDFNSLYPSIIQEYDICFTTVKR 1019

Query: 934  SPD--GLVPHL-------PSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-QLDIQ 983
              D  GL P L       P  +   VLP+++  LVQ RR VK  +K  +   I+ QLDI+
Sbjct: 1020 GKDMAGLAPELPPPVLGKPGGENAAVLPQVICKLVQHRRAVKELLKKETNDVIKAQLDIR 1079

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q ALKLTANSMYGCLGFS SRFYAKPLAELIT QGREIL+STVDL Q NL+ +VIYGDTD
Sbjct: 1080 QLALKLTANSMYGCLGFSASRFYAKPLAELITGQGREILQSTVDLAQ-NLSYDVIYGDTD 1138

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ--F 1101
            SIMI++  D++A+   +  +V +EVNK+YK LEI++DG Y+ MLLLKKKKYAAV V+   
Sbjct: 1139 SIMINTNKDNLAEVHKVGQEVKREVNKRYKLLEIEMDGCYRSMLLLKKKKYAAVVVEPSM 1198

Query: 1102 KDG--MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
             +G  +  E +E+KGLD VRRDW  L+K+VGD CL +I  +R+ ED VE IH++L + + 
Sbjct: 1199 HEGKTIYVERVEKKGLDTVRRDWCKLAKDVGDTCLDEIFKKRAVEDTVEKIHDALREART 1258

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             M + QV LE Y++TK LTK P  YPDA +QPHV+VALR  + G   G +AG+TVPYIIC
Sbjct: 1259 KMVNNQVNLESYIVTKQLTKSPRDYPDANSQPHVKVALRRIEQGKQDGVNAGETVPYIIC 1318

Query: 1220 CE-----------------QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            CE                   +S     G+A+RA HP+EL++ +    +D+ YY +QQ+H
Sbjct: 1319 CEVKPEDEKDMTNDAIANGHASSKSGGKGLAERAFHPEELQE-NPNLRVDLHYYLTQQLH 1377

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA--VGDEERYRGC 1320
            PV+SRLCA IEGT   RLADCLGLD SKF ++       D +++   A  + D+  Y  C
Sbjct: 1378 PVISRLCAPIEGTDAARLADCLGLDASKFAARNVGADDDDMNANRYAACSLDDDAMYEKC 1437

Query: 1321 EPLILSCPSCSSTFDCPAV---------CSSICMSVSEKPSKPETEYNFWRTLRCPKCPE 1371
            EPL L      + F  P V         C+      S +     TE     T    K P+
Sbjct: 1438 EPLKLFASDGKTEFTFPGVRDILLGKISCADALKPPSARGVVSATEDKENATTTSVKTPQ 1497

Query: 1372 EVEAGR---------------------------ISPGMIANQVKRQADGFVSMYYKGLMM 1404
                G                            +S     NQV  Q    +  YY   + 
Sbjct: 1498 PKTPGSGTAATTPDAATTQKSKTDASATTTIQPLSAAAFTNQVTLQVRKTIQKYYAQKLR 1557

Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
             DDE     T  + L+ +GD E GT  P    C+G + + + E +LY QL +F  LL  +
Sbjct: 1558 SDDELYPCETRDITLKAVGDVEVGTK-PLNTICSGVMKKSFEERELYTQLVHFKRLLSRK 1616

Query: 1465 RGIEKM-EISAKIPLEKELNK-IRPVVALAASTVQRIRERCAYGWVKLNDI 1513
              + ++ + S +   EK + K +R  + LA   V+ +    AY WV L+ +
Sbjct: 1617 DALGRIKDQSIRGTCEKNITKEMRTALDLAKDEVEEVLNLSAYRWVNLSTL 1667


>gi|357482859|ref|XP_003611716.1| DNA polymerase [Medicago truncatula]
 gi|355513051|gb|AES94674.1| DNA polymerase [Medicago truncatula]
          Length = 611

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/605 (74%), Positives = 502/605 (82%), Gaps = 42/605 (6%)

Query: 953  ELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            ELLK LV+ RR  KTWMKTASGLK QQLDI+QQALKLTANSMYGCLGFSNSRFYAKPLAE
Sbjct: 9    ELLKKLVKLRREKKTWMKTASGLKRQQLDIEQQALKLTANSMYGCLGFSNSRFYAKPLAE 68

Query: 1013 LITQQ-------------------------------------GREILRSTVDLVQNNLNL 1035
            LIT Q                                     GREIL+STVDLVQNNLNL
Sbjct: 69   LITLQVRRICWLVSTKPVIIHYHTLSIVSDTFILTYMFDVIQGREILQSTVDLVQNNLNL 128

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIMI+SG+DDIAKA +I+ KVIQEVNKKY+CLEIDLDGLYKRMLLLKKKKYA
Sbjct: 129  EVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYA 188

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            AVKVQFKDG PYEVIERKGLD+VRRDWSLL+K++GDFCL+QILS  SCEDVVESIHNSLM
Sbjct: 189  AVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLM 248

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            KVQE+MR+GQVALEKYVITKTLTKPPEAYPDAKNQPHV VA RLKQ GY++GCS GDT+P
Sbjct: 249  KVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIP 308

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+ICCEQG SSGS+ GIA RARHPDELK+  G W+IDIDYY SQQIHPV+SRLCASI+GT
Sbjct: 309  YVICCEQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVISRLCASIQGT 368

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFD 1335
            SPERLADCLGLD SKFQ K SE  S DP+SSLLFA  DEERYRGCE L+LSCPSCSS FD
Sbjct: 369  SPERLADCLGLDTSKFQHKSSEA-SDDPTSSLLFAGDDEERYRGCESLVLSCPSCSSVFD 427

Query: 1336 CPAVCSSICMSVSEKPSKP---ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
            CP V  SICM  +EKP+     E++YNFWR L CPKC E   AGRIS  MIANQVKRQA+
Sbjct: 428  CPPVFKSICMLGNEKPTSSGTDESDYNFWRKLCCPKCFEN-GAGRISAAMIANQVKRQAE 486

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
             FV MYY+GL+MCDDETCK+TT S++ RL+GD+ERGTVCPNYPRCNG L RKYTEADLYK
Sbjct: 487  KFVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYK 546

Query: 1453 QLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
            QL+YFCH+ DT   IEKME  ++IP+EKEL KIRP+V LAAST+Q+IR+RCA+GWVKL D
Sbjct: 547  QLSYFCHVFDTVCYIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQD 606

Query: 1513 IAISV 1517
            + +++
Sbjct: 607  LVVAI 611


>gi|308806656|ref|XP_003080639.1| DNA-directed DNA polymerase alpha catalytic subunit, putative (ISS)
            [Ostreococcus tauri]
 gi|116059100|emb|CAL54807.1| DNA-directed DNA polymerase alpha catalytic subunit, putative (ISS)
            [Ostreococcus tauri]
          Length = 1530

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1248 (39%), Positives = 728/1248 (58%), Gaps = 99/1248 (7%)

Query: 326  EFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV----KAGSTHHSCCVVVKNMQRCVY 381
            E   D DGS+PF+ +DAHE+      GT++LFG+V    + G+   S C VV+NM+RC+Y
Sbjct: 316  ELPKDADGSIPFFFMDAHEERESP--GTVFLFGRVPVSSEPGAETISACAVVQNMERCMY 373

Query: 382  AIPNGPLFQT--DEIMKLEKDAEESR--------------------ISPMAFRKKLQDVA 419
             IP    F    DE+M+L    +E+R                     +     K+L   +
Sbjct: 374  VIPTASTFDDPDDELMELADKMDEARRKFKTCTDADKLEEAKVAAQKAKADLMKRLVPKS 433

Query: 420  LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKG 479
              L+ EI   L    + N  ++ V+R Y F + +IP G  +VLK+  P      P+DLKG
Sbjct: 434  GALRAEIKELLKKRGIENSKITIVRRHYCFERKDIPHGSLFVLKVKTPATQSAFPSDLKG 493

Query: 480  ENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV-DSPKDIR 538
             NF +++GT +  LEL  +K K+KGPSW+S+   S  P+ ++ SWCK E+++  + K +R
Sbjct: 494  TNFIAMMGTQAPMLELLTLKSKLKGPSWISLHGASIVPSEKQKSWCKLEMSIPHAHKGVR 553

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
             +S+       P +TV ++NL+T+ N + +VNEI  ASV        +      + ++  
Sbjct: 554  PASNEAATRSAPKLTVASLNLQTIVNHQTNVNEIALASVQYIRDVDCEGTTAPQQIRQG- 612

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNS------KAGSNVLCCESSERALLNRLMIELY 652
             + HF+VVRKLDG   P G+     + NS      + G+ VL  +++E  LLN L+ +L+
Sbjct: 613  -VRHFSVVRKLDGLELPQGWQNAVANENSTNVVAKRTGTVVLSSQNNELGLLNFLLAKLH 671

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            +LD DV+VGHNI GF+LDVLL R Q  ++    WS+IGR+KR+ MP +      +G GAS
Sbjct: 672  QLDPDVIVGHNIGGFNLDVLLRRFQANKI--GHWSRIGRMKRTRMPNINGSGGAYGGGAS 729

Query: 713  PGIMSCIAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES 771
             G M CI GRLL DT+L ++DLL +EVSY+L+ L++TQLN  R+E+   ++   +   +S
Sbjct: 730  LGAMQCITGRLLADTYLSAKDLLGKEVSYTLSSLSQTQLNVRREEIAGAEIPNHYMQTQS 789

Query: 772  LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR 831
            LM LI+  E DA LS+ LMF + V+PLT+QL+NI+GNLW KTL   RAQRVEYLLLH F 
Sbjct: 790  LMHLIKCTEIDAKLSLHLMFKMEVIPLTKQLSNIAGNLWSKTLGHTRAQRVEYLLLHEFH 849

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
             +K+I+PD+ +  +  ++A                 N D   D          GK+GP+Y
Sbjct: 850  KRKHILPDRLSSKERRRVAA---------------VNGDEEDDG---------GKKGPSY 885

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-PDG------LVPHLPS 944
            AGGLVLEPKKGLYD ++L+LD+ SLYPSIIQEYNIC+TTV+R   DG      L P + +
Sbjct: 886  AGGLVLEPKKGLYDDFVLVLDYQSLYPSIIQEYNICYTTVKRHFNDGDDPTIQLPPSVSN 945

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             K   VLP ++ ++V+ R+ VK  M K +   + +Q D++Q ALKLTANSMYGCLGFS S
Sbjct: 946  DKDFAVLPAVIASIVRSRKDVKGLMAKESDPARKKQYDLRQLALKLTANSMYGCLGFSQS 1005

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RFYA+ +A LIT QGR IL+ TVDL +   +L+VIYGDTDSIM+++G  ++ +A+A   K
Sbjct: 1006 RFYAEAIAALITSQGRTILQHTVDLARQKCDLDVIYGDTDSIMVNTGTKNLDQARAAGNK 1065

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK-VQFKDGMPYEVIERKGLDMVRRDW 1122
            +I+ VN++Y+ L ++ D  ++ MLLLKKKKYAA+K V   +G     +E KGLD+VRRDW
Sbjct: 1066 LIRFVNREYRKLVLEEDYAFRSMLLLKKKKYAAMKVVNGPNGTKMTELEMKGLDIVRRDW 1125

Query: 1123 SLLSKEVGDFCLSQILS-ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            + L KE+G   L ++L  +   E+ V +IH+ L +++ +M + +V L+KY+ITK LTK  
Sbjct: 1126 APLVKEIGKQTLEELLEVDGELEERVTAIHDLLREIRVEMVANRVPLDKYIITKQLTKAV 1185

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS----------SGSSVG 1231
            E YPDAK+QPHV VA R  ++G   G  AG+TVPYII  E   S          +    G
Sbjct: 1186 EEYPDAKHQPHVMVAKRRLEAGKQDGVRAGETVPYIIAMESDASLEDIASGKAGATGGKG 1245

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
            +A+RA HPDE+K+ + K  ID+ YY SQQ+HPV+SRLCA IE T   ++A+CLG+D +KF
Sbjct: 1246 LAERAYHPDEVKERNLK--IDLHYYLSQQVHPVISRLCAPIEETDGAKMAECLGMDSNKF 1303

Query: 1292 QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL-SCPSCSSTFDCPAVCSSICMSVSEK 1350
            +S+  E    D S   +F + D+ER+  C PL+L +       F      +   + V+E 
Sbjct: 1304 KSQSREDDLDDGSGGGVFGLDDQERFHDCAPLLLRTSDGVEFPFRGVREVADGKLHVNEA 1363

Query: 1351 PSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
             + P  + +   T   P    +     +S   + NQV   A   +  +Y   +  +D+  
Sbjct: 1364 LAPPTPDADKENT---PATQGKSTKKFVSGASLTNQVILAARARIKEFYAAPLRSNDDVD 1420

Query: 1411 KYTTCSLNLRL--IGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL---DTQR 1465
            +  T ++ LR+     A  GT+  + P   G + +   E  LY QL ++  LL   D +R
Sbjct: 1421 RTETHNIALRVHHTNAALTGTLSAD-PMSTGTMEKTVPEEKLYNQLLFYKKLLSIEDAKR 1479

Query: 1466 GIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            G+   E         EL K    +  A   + +I ++ +Y W+ L+++
Sbjct: 1480 GMTDDEQRKTFLAGTELEK---SLTAANEALDKIMDKSSYKWIALSEL 1524



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 12  RRSRGAEASARAEALERLKALRRGGR---RSGDSVGYNIKLENPIYDTVAEDEYDALVAR 68
           RR+R ++A+   E   RL+  R G +   R  ++      +EN +YD + ED Y ALVA+
Sbjct: 4   RRARSSKAAKALELTARLREQREGDKKRSRIDEAADEADAIEN-VYDELDEDAYRALVAK 62

Query: 69  RREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDE 106
           RRE    F+V+D G GY D G+EEDW+ A  P+ SDDE
Sbjct: 63  RREAGVDFVVNDAGEGYDDLGEEEDWTTAN-PNYSDDE 99


>gi|302852093|ref|XP_002957568.1| hypothetical protein VOLCADRAFT_107737 [Volvox carteri f.
            nagariensis]
 gi|300257085|gb|EFJ41338.1| hypothetical protein VOLCADRAFT_107737 [Volvox carteri f.
            nagariensis]
          Length = 1606

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1254 (38%), Positives = 696/1254 (55%), Gaps = 91/1254 (7%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVV 373
            D    G         +D +G +PFY+LDA+E       G + LFGKV++     SC V V
Sbjct: 337  DSSTPGSAPGPGTLPLDSNGVMPFYMLDAYEN-PDVRPGEVLLFGKVESEGRWLSCAVSV 395

Query: 374  KNMQRCVYAIPNGPLFQT--DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL 431
            + +QRC+  +P   +F+     I +LE   +E     +   K LQ+    ++ E+   L 
Sbjct: 396  RGLQRCLLVVPRPEVFEDVDGSIARLEAAVKEDPSRRVELIKLLQERCSSVREEVRGLLT 455

Query: 432  NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP----PLPADLKGENFCSLLG 487
               V +  + PVKR YAF   ++P GE +V+K+ YP   P    P      G  F ++ G
Sbjct: 456  RAGVGSMRMVPVKRSYAFEVKDVPHGEQWVIKVRYPAHMPTVQSPTGGPPSGRTFVAIFG 515

Query: 488  THSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDI----RVSSSS 543
               S LE   +KR++KGP WL + +        + +WCK E+ VDS K +    +  S+ 
Sbjct: 516  AQQSCLEALQLKRRIKGPGWLGVFQPQRIEYGNQATWCKVEVVVDSAKKLLSGDKGLSAD 575

Query: 544  KHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHF 603
              V + PP+ V +++LKT  N+    +EIV+ASVV   +   D P+   EW  P  L +F
Sbjct: 576  VAVRKPPPLVVASLSLKTQINRTSHQHEIVAASVVHLSEVSPDAPLSTGEWGNPARLRNF 635

Query: 604  TVVRKLDGGIFPMGFN-----KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
            ++VR+LDG  +P G       + AT R    G NV+  ++SER+LL  L+  L  LD+DV
Sbjct: 636  SIVRRLDGQAWPHGMEPAAAAENATPRGRANGGNVISLQASERSLLTCLLARLQSLDADV 695

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            LVGHNI+ FDL  LL R Q  +VP  +WS+IGR+K++E P+L  G   FG GA PG+MS 
Sbjct: 696  LVGHNIAAFDLTTLLTRMQHHKVP--LWSRIGRVKKTEFPRLTGGGHSFGGGAGPGVMST 753

Query: 719  IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE--------VGPHDVLKMFQTLE 770
            IAGRLLCDT+L +R+L++ V ++L+ LA   L + R +             +   F + E
Sbjct: 754  IAGRLLCDTYLSARELVKSVDFTLSTLATNLLGQTRTDPLTGGGAPGVGDGLAGCFSSAE 813

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
             ++ L+ +GE+DAWL++ +MFHLSVLPLT+QL+ +SG LW +TL G RAQR+E LLLH F
Sbjct: 814  GVLRLLRHGESDAWLALGIMFHLSVLPLTKQLSVLSGQLWSRTLAGQRAQRIEMLLLHEF 873

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSN-------HGVEDRNVEELTNEDANFDNDTSHNDHR 883
              +K+I PDK TY  + K  KQ++         G +D   +    +        S +   
Sbjct: 874  HGRKFITPDKQTY--KDKQRKQQAEADEYDDAGGDDDGEDDAGGGKKGKKGKKGSASAAA 931

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP 943
                GP Y+GGLVLEPKKGLYDK +++LDFNSLYPSIIQEYNICFTTV R  DG +P LP
Sbjct: 932  AKSNGPKYSGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTTVSRPQDGSLPALP 991

Query: 944  ----SSKTTGVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCL 998
                ++K    LP +L++LV RR+ VK  M +  + L  QQL ++QQA+KLTANSMYGCL
Sbjct: 992  NPATAAKGLAPLPAVLQSLVNRRKQVKAAMSSERNPLTRQQLQVRQQAIKLTANSMYGCL 1051

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GF  SRFYA+PLAELIT QGR IL STVDLVQ ++  EVIYGDTDSIM+ +  D + +A+
Sbjct: 1052 GFGASRFYAQPLAELITAQGRSILSSTVDLVQGSIGAEVIYGDTDSIMVATHSDSVEEAR 1111

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDM 1117
             +  K+ +EVNK+YK LEI+LDG+++ +LLLKKKKYAA+K++ +  G   +V+E+KGLD+
Sbjct: 1112 ELGAKIKKEVNKRYKLLEIELDGIFRSILLLKKKKYAAMKLELEPGGKVVQVMEQKGLDI 1171

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI--TK 1175
            VRRDW  LSK+ G+F LS ILS  + E+VV  IHN L +  E +R+GQ     Y+I   +
Sbjct: 1172 VRRDWCPLSKDEGNFALSAILSGGNREEVVAEIHNHLRQTAEKLRAGQGETVPYIICVER 1231

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
                   A   A      + A     +  +   + G+          G  +G S  +A+R
Sbjct: 1232 KRDDATAAAATADGPAAAEGAPAPAAANPAPATTGGNGT----SAANGGGTGCSGSLAER 1287

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP 1295
            ARH +EL+  +    +D++YY +QQIHPVVSRL + IEGT    +ADCLGLDP+K++   
Sbjct: 1288 ARHLEELRD-NPSLEVDVEYYLAQQIHPVVSRLVSHIEGTDAAHIADCLGLDPTKYRGTS 1346

Query: 1296 SETMSSDP------------SSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSI 1343
                S                SS+   + +E+ +R C PL+L+ P+ SS F    V + +
Sbjct: 1347 GAGGSGGFGGGGDEDSGLMVGSSMGTLMDEEDNFRSCSPLMLNSPNGSS-FPLRGVDAVL 1405

Query: 1344 CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
               V                L  P      +  R+    + NQV  +A   V+ YY G++
Sbjct: 1406 RGEV------------LPDHLLTPLDALGDDTARVGLAGLVNQVLLRAHEAVARYYDGVL 1453

Query: 1404 MCDDETCKYTTC--SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHL- 1460
              DDET +      +  LR+ G    GT   +Y R        + E  + +Q   +C + 
Sbjct: 1454 RPDDETAEVAGGCRAAVLRVPGGGSGGTALCHYYRL------LHVEGAVRRQ---YCRIR 1504

Query: 1461 -LDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
              D +  I   ++ A IP       +   +A AA  V  IR    + WV L  +
Sbjct: 1505 AADPKSQIAMEDLRALIP-----EPLSRTLASAAEAVDSIRRCSHWHWVDLGKL 1553



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 26/180 (14%)

Query: 26  LERLKALRRG-GRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
           LE+L+A R G G+R+   + Y +K E+ +YD V E +Y  +V +RR+ A  F+VDDDG G
Sbjct: 21  LEQLRAAREGSGKRA---LTYEVKEEDAVYDVVDEHQYAEIVKKRRD-AGAFVVDDDGTG 76

Query: 85  -YGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK---------- 133
            Y D G+++ W+    P   D E  +G++    +   K+ KKE+ +   K          
Sbjct: 77  GYADIGEDDYWNER--PDGEDGEEDEGEQGSGGKHANKKRKKEHAKGTSKRKPGEGDDGV 134

Query: 134 PNPSLTAAAAMMGKQR--LSAMLTSTAMFKKSKDEKV------KESESVIDEVLAEFAPD 185
           P P       M  K R  L  +L S +  +K +            S+ V+D +L +  PD
Sbjct: 135 PKPEGGNITTMFRKARAWLPYLLPSISPHRKQRSAAGAAKPTDASSDDVLDSILGDLLPD 194


>gi|145349730|ref|XP_001419281.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579512|gb|ABO97574.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 990

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1031 (44%), Positives = 640/1031 (62%), Gaps = 78/1031 (7%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHS----CCVVVKNMQRCVYAIPNGP 387
            DGS PF+ +DA E+      GT++LFG+V   S   S     C VV+NMQRC+Y +P   
Sbjct: 1    DGSTPFFFMDAQEERESP--GTVFLFGRVPVSSDPQSETISACAVVQNMQRCMYIVPTAS 58

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
             F   +    E  A++++   M   KKL  ++  L+ E+   L    + N  ++ V+RRY
Sbjct: 59   TFADPDG---EIAAQKAKSDLM---KKLVPLSGDLRAEVKEVLKARKIENSKITIVRRRY 112

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
             F + +IP G  +VLK+  P      P+D+KG++F + LGT +  LEL  +K K+KGPSW
Sbjct: 113  CFERKDIPQGPLFVLKVKIPATYAAFPSDIKGKHFVAALGTQAPMLELLTLKSKLKGPSW 172

Query: 508  LSISKFSSCPAPQRVSWCKYEITV-DSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            +++   +  P  ++ SWCK E+T+ ++ K +R    +      P +TV ++NL+T+ N++
Sbjct: 173  IALHGAAIVPTEKQKSWCKLELTLPNAHKSVRPCLEAIASRPAPRLTVASLNLQTIVNQQ 232

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +VNEI  ASV        +    A++ K    L HFTVVRKLDG   P G+       N
Sbjct: 233  TNVNEIAVASVQYIRDVNCEGSTTAAQLKTG--LRHFTVVRKLDGLEMPPGWQNAVAHEN 290

Query: 627  S------KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
            +      + GS VL  +++E  LLN L+ +L++LD DV+VGHNI GF+L+VLL R Q  +
Sbjct: 291  NTNVIAKRTGSVVLAAQNNELGLLNFLLAKLHQLDPDVIVGHNIGGFNLEVLLRRFQANK 350

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL-REVS 739
            +    WS+IGR+KR+ MP +      +G GAS G + C+AGRLL DT+L ++DLL +EVS
Sbjct: 351  I--GHWSRIGRMKRTRMPNINGSGGAYGGGASMGALQCLAGRLLADTYLSAKDLLGKEVS 408

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            Y+LT L++TQL   R+EV   ++   +Q   +LM LI+  E DA LS+ LMF + V+PLT
Sbjct: 409  YTLTSLSETQLGVRREEVPSAEIPNRYQDTNALMHLIKCTEIDAKLSLHLMFKMEVVPLT 468

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            +QL+NI+GNLW KTL   RAQRVEYLLLH F ++K+IVPD+ +       AK+R      
Sbjct: 469  KQLSNIAGNLWSKTLGHTRAQRVEYLLLHEFHSRKHIVPDRLS-------AKER------ 515

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
             R V   + E+   ++D        GK+GP+YAGG VLEPKKGLYD ++L+LD+ SLYPS
Sbjct: 516  -RRVAAASGEE---EDDG-------GKKGPSYAGGRVLEPKKGLYDTFVLVLDYQSLYPS 564

Query: 920  IIQEYNICFTTVERSPDG--------LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            IIQEYNIC+TTV R  D         L   + S K   VLP+++ N+VQ RR VK  M +
Sbjct: 565  IIQEYNICYTTVRRHFDAGEENTEIELPAPILSDKDFAVLPKVIANIVQSRREVKGLMAR 624

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                 + +Q D++Q ALKLTANSMYGCLGFS SRF+A+P+A LIT QGR+IL+ T DL +
Sbjct: 625  EKDPARAKQYDLRQLALKLTANSMYGCLGFSQSRFFAEPIAALITAQGRKILQRTEDLAK 684

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
                L+VIYGDTDSIM+++   D+  ++A+  K+I+ VNK+Y+ L ++ D +++ MLLLK
Sbjct: 685  AKCELDVIYGDTDSIMVNTKSHDLNHSRALGNKLIRFVNKEYRKLVLEEDYIFRSMLLLK 744

Query: 1091 KKKYAAVK-VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL---SERSCEDV 1146
            KKKYAA+K V   +G     +E KGLD+VRRDW+ L K+VG   L ++L    ER  E+ 
Sbjct: 745  KKKYAAMKVVNGPNGTKATKLEMKGLDIVRRDWAPLVKDVGKQTLEELLDVDGER--EER 802

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V +IH+ L  +++DM   +V L KY+ITK LTK  E YPDAK+QPHV VA R  ++G   
Sbjct: 803  VNAIHDGLRTIRKDMVENRVQLSKYIITKQLTKAVEEYPDAKHQPHVMVAKRRLEAGKQD 862

Query: 1207 GCSAGDTVPYIICCEQ----------GTSSGSSVGIAQRARHPDE-LKKGDGKWMIDIDY 1255
            G  AG+TVPYII  E              +    G+A+RA HPDE L+KG     +D+ Y
Sbjct: 863  GVKAGETVPYIIALESELPLEDIAAGKAGASGGKGLAERAYHPDEILEKG---LKVDLHY 919

Query: 1256 YASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP-SETMSSDPSSSLLFAVGDE 1314
            Y SQQ+HPV++RLCA IE T    +A+CLGLD +KF+++   E    D      FA+ DE
Sbjct: 920  YLSQQVHPVITRLCAPIEETDGAAMAECLGLDSNKFKTQTRDEDEYDDTFGGGRFALDDE 979

Query: 1315 ERYRGCEPLIL 1325
            ER+  C+PL L
Sbjct: 980  ERFAKCKPLKL 990


>gi|384487376|gb|EIE79556.1| hypothetical protein RO3G_04261 [Rhizopus delemar RA 99-880]
          Length = 1319

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1442 (36%), Positives = 781/1442 (54%), Gaps = 164/1442 (11%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            +S+RAE   +LK LR   R    S    I+ ++ +Y+ + E++Y A+     ++   F+ 
Sbjct: 3    SSSRAERDNKLKKLRDAMRSKRKS--KTIQDDDDLYEEIEENDYLAI-----QDDEAFVE 55

Query: 79   DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
            DDD  GY D G+EE+++ +       DE         +  +EK    +  + +++  PS 
Sbjct: 56   DDDKGGYIDNGEEEEYNYS-------DEY--------ETEVEKISSGKRKRKIKQKQPS- 99

Query: 139  TAAAAMMGKQRLSAMLTSTAMFKKSKDEKVK-------ESESVIDEVLAEFAPDEADRER 191
                 +   Q+++   +S+ + K + ++ +K       ES+S ++++L+EF  +   ++ 
Sbjct: 100  ---TPVKPNQQINKFFSSSMIKKHTAEKPIKHKPIDKEESDSFLNDLLSEF--NTPTKQE 154

Query: 192  RRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWE 251
            R+  V+  ++   +VN +   SQ+ T     ++  S L     Q     + +E  E    
Sbjct: 155  RKAPVNVPVREKPAVNHLSRLSQMRT----PIQRASLLAQQ--QQPEPPIAQEISEPSVP 208

Query: 252  SDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNM 311
            + +  EL   D F ++   +K E    ++         + E   +     GW++      
Sbjct: 209  TSSELELESID-FDDIMNDIKVESINQIEMSNNKPTFSTLEPATIAPGLQGWEDADAS-- 265

Query: 312  VLDEGKSGLNCQESE----FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH 367
            ++D        +ES+    FE  +DG L  +  DA+E+      G +YLF    +G++  
Sbjct: 266  MIDTFAQDTVKEESQSVNVFE--EDGHLRMWWYDAYER---KEKGYVYLFA---SGNS-- 315

Query: 368  SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIA 427
                                   TD+ +++    EE  +S +  + ++            
Sbjct: 316  -----------------------TDKEVEITDVYEE--VSELFSKHRI------------ 338

Query: 428  NQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLG 487
                    + Y    V R+YAF   ++PA  +Y LK+ Y ++ P L     G+ F  + G
Sbjct: 339  --------TKYASKKVSRKYAFELHDVPAESDY-LKVLYDYEQPSLTGTETGKTFSRVFG 389

Query: 488  THSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR--VSSSSKH 545
             ++  LE FLVKR + GP WL IS        +  +WCK E+TV+ PK +   V  +   
Sbjct: 390  ANTGPLEHFLVKRDIMGPCWLDISGAQMSKTSE--TWCKVEVTVEDPKTVNPLVDETGNR 447

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
               VPP+ V ++ L+T+ N +++VNEIV+AS + C++ +ID      E  K      FTV
Sbjct: 448  PIHVPPLIVMSLCLRTIMNSKKNVNEIVAASALVCNQVQIDDTKSLEEQTK----MRFTV 503

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
            VR+L+   +P GF +       K+G   +  E +E +LLN L+  ++  D DV+VGHN +
Sbjct: 504  VRQLESQPYPAGFMEMVGKEKKKSGGFSIQAERTEASLLNFLIARIHLCDPDVIVGHNFA 563

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
            GFDLDVLLHR +   +    W ++GRLKR   PKL+ G    G       M  ++GRL+C
Sbjct: 564  GFDLDVLLHRMKALNI--QHWHRLGRLKRKNWPKLQAGAGGVGESTFQERM-IMSGRLVC 620

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DT+L S+DL+R  SY LT LA++QL   R+++      + F+   +L   +++   DA+L
Sbjct: 621  DTYLASKDLIRSKSYRLTDLAQSQLKIAREDIEFGKSEEYFENSNNLFHFLKHCSFDAYL 680

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            S  LMF L VLPLT QLT ++GNLW +T+ GARA+R E+LLLH F   KYI PDK    K
Sbjct: 681  STSLMFKLQVLPLTHQLTALAGNLWARTMTGARAERNEFLLLHEFHKAKYICPDKTFGNK 740

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
            E+    Q      E  + E+   E +N          + G+R PAYAGGLVLEPKKG YD
Sbjct: 741  ESVSVGQAVVQAAEQDDDEDALKEVSNV--------KKSGRRKPAYAGGLVLEPKKGFYD 792

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSP---------DGLVPHLPS-SKTTGVLPELL 955
            KY+LLLDFNSLYPSIIQEYN+CFTTV+RS          +  VP +P  S   G+LP+LL
Sbjct: 793  KYVLLLDFNSLYPSIIQEYNVCFTTVDRSAFQQGNEKNEEEKVPDVPGDSVPEGILPKLL 852

Query: 956  KNLVQRRRMVKTWMK-TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            K LV RRR VK  MK   S  K  QL+I+QQALKLTANSMYGCLGF+ SRFYAKPLA LI
Sbjct: 853  KTLVDRRRQVKNAMKGEKSEAKYNQLNIRQQALKLTANSMYGCLGFTYSRFYAKPLAMLI 912

Query: 1015 TQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
            T +GREIL+STV+L   NL++ VIYGDTDSIM+++  +D+ + K +   + ++VN  YK 
Sbjct: 913  TFKGREILQSTVNLA-GNLDMNVIYGDTDSIMVYTNQNDLNEVKKMGNLLRKKVNDHYKL 971

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKD-GMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
            LEI +DG +K MLLLKKKKYAA+ V+ KD G   E +E KGLD+VRRDW  LS +V    
Sbjct: 972  LEIGIDGYFKHMLLLKKKKYAALLVEEKDNGELVESVETKGLDLVRRDWCDLSHDVSSHV 1031

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L  ILS++  ++VV  IH  L    E +R G++ LEKYVI K LTK P+ Y DAK+QPHV
Sbjct: 1032 LDLILSDKERDEVVNEIHTYLEVTVERIRQGEIPLEKYVINKQLTKRPQDYADAKSQPHV 1091

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            QVALR+  +G   G  +GDTVPY+IC     +SG   G A RA HPD++ K + +  +DI
Sbjct: 1092 QVALRMIAAG--QGVKSGDTVPYVICKVDEETSGDKKGSALRAYHPDDVVKKNMQ--LDI 1147

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAV 1311
            ++Y  QQ+HP ++RLC+ IEGT P RLA CLGL+ S+++   S  M  D     +L   +
Sbjct: 1148 EWYLQQQVHPPLTRLCSPIEGTDPARLAGCLGLEASRYRHF-SGGMGEDEQELVTLDSQI 1206

Query: 1312 GDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPE 1371
             D ER++  E L+L+C +C   F    +               +TE      L+C  C +
Sbjct: 1207 SDAERFKSSEALLLTCNNCDKEFKYEGILR-------------QTEDTIECGLKCVHCYQ 1253

Query: 1372 EVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERG 1428
             +    +   +I N        ++  YY+G ++CDD TC   T  +++   R + D  RG
Sbjct: 1254 VIHYASLKAQLILN-----IRNYIDRYYQGWLLCDDPTCGNRTRMISVFGRRCLADECRG 1308

Query: 1429 TV 1430
            T+
Sbjct: 1309 TM 1310


>gi|409081694|gb|EKM82053.1| hypothetical protein AGABI1DRAFT_126401 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1438

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1491 (35%), Positives = 790/1491 (52%), Gaps = 146/1491 (9%)

Query: 13   RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRRE 71
            RSR A A ++A+ L   K  R GG R        +K E+  IYD V ED+Y ++V + R 
Sbjct: 3    RSRRA-AKSKADKLAEYKRAREGGTRI-------LKEEDTTIYDEVTEDQYKSIV-KGRL 53

Query: 72   EARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV 131
            +   F+VDD   GY D G + DW + G   SSDD+     +  K + +    K       
Sbjct: 54   QKDDFVVDDGVAGYMDNGMD-DW-MDGNEESSDDQVQKKSKKKKSKDVSTSTKPRPKPRP 111

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE----- 186
              P PS++A    +  ++ S  ++S          KV+ ++S   +   ++  D+     
Sbjct: 112  ALPAPSMSAYRPAVSAEQESDFMSSLLGELDQVPTKVQPTKSRKRKPAPQYISDDDVSPG 171

Query: 187  --ADRERRRRSVSSNIKSFVSV-NSVKTNSQLVTNSTNSVKENSDLINNFV-QIQNCDVV 242
                +  ++R+   ++ S   V + +  +    T+    +K +   +   V Q+ + DV 
Sbjct: 172  SSKFKSYQKRTPYMDLSSDGPVEDDLPPSEDDFTSPKKKIKIDDSAVTPAVEQLADLDVH 231

Query: 243  EESKELKWESDNSTELTKRD-NFVEVKEKVKDEVNEDVKECKKLNAK----ISTEKD--P 295
              S    ++ D+       D +  + K  VK+E+   + +    N      + TE+D  P
Sbjct: 232  GSSDFESFQFDDIDFNEPMDIDGDDSKPSVKEEIEPVIPKATTFNGNSVKPVKTEEDTKP 291

Query: 296  LLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLY 355
               +      V   + +     S L+       +++DGSL F+ +D  E       G +Y
Sbjct: 292  AWLSVYDSLNVESQDSLGPITSSNLSNSADIAALEEDGSLRFFWIDYLEL-----DGKIY 346

Query: 356  LFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRK 413
              GK+K        SCCV V+NMQR ++ +P     + DE    + D  E+ I P     
Sbjct: 347  FIGKLKDKKSGVWISCCVAVENMQRNLFCLPREKRHEQDE----DGDITETDIVPT---- 398

Query: 414  KLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPL 473
             ++DV      E+  +   L +  +    VKR+YAFG+ ++P  E   LK+ Y F +PP+
Sbjct: 399  -MEDVYSDF--ELIRK--ELKIKKWRGKIVKRKYAFGEKDVPRDETQWLKVVYGFNEPPI 453

Query: 474  PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDS 533
            P   +  N   + GT ++A EL ++KRK+ GP WL I   +     + +SWCK E+TV  
Sbjct: 454  PPKAESPNIARIFGTSTNAFELLVLKRKIMGPCWLQIK--NPVVDNKGISWCKLEVTVSD 511

Query: 534  PKDIR-VSSSSKHVA-EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
            PKDI  +S +   +  + PP+TV ++ ++++ N R++  EI+  S       +ID P   
Sbjct: 512  PKDITPLSDTDPDIPKDTPPLTVMSLTIRSIVNHRENSREIICTSSRTWQNLQIDDPTPP 571

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
               K P  +  F  VR LD   FP  F+  A   +  A S V    ++E  LLN+L+ E+
Sbjct: 572  D--KLPCRVQTF--VRPLDK--FPPNFDARARASSRGAISPV----TNETMLLNQLIQEI 621

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
            YK+D DV++GH   G  LD+LLHR +  +V    WS++GR +RS  P         G G 
Sbjct: 622  YKMDPDVILGHEFLGVSLDILLHRMRDLKV--KHWSRLGRFRRSRWP---------GIGR 670

Query: 712  SPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
                +  + GR+LCD  L S   + ++   ++SL+++ +T LN +R E+ P D    F  
Sbjct: 671  QGTNLRFLNGRMLCD--LASDGAKSMIASTTWSLSEMCRTHLNFERPEIDPDDTASYFDG 728

Query: 768  ---TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
               T   ++E +++ E DA   M +   + +LPLT+QLTN++GN W KTL G RA+R EY
Sbjct: 729  SLSTPNRMLEFVQHCELDAHYQMAIGSKVQILPLTKQLTNLAGNAWNKTLNGGRAERNEY 788

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +LLH F   KYIVPDK TY K+T   KQ                     D+D       K
Sbjct: 789  ILLHEFHRLKYIVPDK-TYGKKTAPVKQ---------------------DDDDPDAPKTK 826

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------SPDGL 938
            GKR   Y GGLV +PK+GL+D YIL++DFNSLYPSIIQEYNI FTTVE+      + +  
Sbjct: 827  GKRD-KYKGGLVFDPKRGLWDTYILVMDFNSLYPSIIQEYNIDFTTVEQFEVEGENGEEK 885

Query: 939  VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMY 995
            +P  P  KT  GVLP L+  LVQRRR VK+ MK  +AS  K+ Q DI+QQALKLTANSMY
Sbjct: 886  IPDPPPPKTAQGVLPRLIATLVQRRRQVKSLMKDKSASHAKLLQWDIKQQALKLTANSMY 945

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLGF  SRFYA+PLA L T +GREIL  T +L ++ LNL+V+YGDTDS+ ++SG  +++
Sbjct: 946  GCLGFEYSRFYARPLAALTTYKGREILTHTRELAES-LNLDVVYGDTDSVFVNSGQTELS 1004

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGL 1115
            +A  I+    + VN +YK LEIDLDG+++R+LLL+KKKYAA+KV+  +G   +V E KGL
Sbjct: 1005 EALKISASFKKTVNDRYKLLEIDLDGVFQRLLLLQKKKYAALKVE--EGGRTKV-EIKGL 1061

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            DM RR++  LSK V  + L QILS    E VVE+IH  L  + +++R+G   +E+++I K
Sbjct: 1062 DMKRREYCALSKNVSQYVLDQILSGEPTEIVVENIHEYLTTIGQNVRNGSTKVEEFIIFK 1121

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             L K PE YPDAKNQPHVQVALR+K  G S     GD + YI C ++G SS S    A R
Sbjct: 1122 RLGKNPEDYPDAKNQPHVQVALRMKSRGGS--ARNGDVISYIFCLDEGESS-SKTTQAGR 1178

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP 1295
            A+HPDE+KK +G+  ID D+Y SQQ+ P + RLC +IEGT   RLA+CLGLDP +++   
Sbjct: 1179 AKHPDEVKKSNGELKIDYDFYLSQQVLPPIERLCDTIEGTDRSRLAECLGLDPMRYRQGN 1238

Query: 1296 SETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPE 1355
            S          L   + D+ER++   P ++ C  C        +       V  +PS   
Sbjct: 1239 SGGSDERAFIPLDSQLSDQERFKDASPFLIKCRKCKVELSFSPINDREHSIV--QPS--- 1293

Query: 1356 TEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
                      CP C         S   I  Q++ Q    + +YY+G  +CDD TC+  T 
Sbjct: 1294 -------GFICPPC-----KAPFSLASIEVQLEVQIRKTIGLYYEGWTVCDDPTCRSRTR 1341

Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             +++        G  C     C G +  +YT+ ++Y QL Y+ +L D ++ 
Sbjct: 1342 MMSV-------YGRRCLKQ-GCRGTVAFEYTDKEIYNQLRYYSYLFDGEKA 1384


>gi|426196928|gb|EKV46856.1| hypothetical protein AGABI2DRAFT_119036 [Agaricus bisporus var.
            bisporus H97]
          Length = 1438

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1495 (35%), Positives = 793/1495 (53%), Gaps = 150/1495 (10%)

Query: 13   RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRRE 71
            RSR A A ++A+ L   K  R GG R        +K E+  IYD V ED+Y ++V + R 
Sbjct: 3    RSRRA-AKSKADKLAEYKRAREGGTRI-------LKEEDTTIYDEVTEDQYKSIV-KGRL 53

Query: 72   EARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV 131
            +   F+VDD   GY D G + DW + G   SSDD+     +  K + +    K       
Sbjct: 54   QKDDFVVDDGVAGYMDNGMD-DW-MDGNEESSDDQIQKKSKKKKSKDVSTSTKPRPKPRP 111

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTS--------TAMFKKSKDEKVKESESVIDEVLAEFA 183
              P PS++A    +  ++ S  ++S            + +K  K K +   I +   + +
Sbjct: 112  ALPAPSMSAYRPAVSAEQESDFMSSLLGELDQVPTKVQPTKSRKRKPAPKYISD--DDVS 169

Query: 184  PDEAD-RERRRRSVSSNIKSFVSV-NSVKTNSQLVTNSTNSVKENSDLINNFV-QIQNCD 240
            P  +  +  ++R+   ++ S   V + +  +    T+    +K +   +   V Q+ + D
Sbjct: 170  PGSSKFKSYQKRTPYMDLSSDGPVEDDLPPSEDDFTSPKKKIKIDDSAVTPAVEQLADLD 229

Query: 241  VVEESKELKWESDNSTELTKRD-NFVEVKEKVKDEVNEDVKECKKLNAK----ISTEKD- 294
            V   S    ++ D+       D +  + K  VK+E+   + +    N      + TE+D 
Sbjct: 230  VHGSSDFESFQFDDIDFNEPMDIDGDDSKPSVKEEIEPVIPKATTFNGSSVKPVKTEEDT 289

Query: 295  -PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGT 353
             P   +      V   + +     S L+       +++DGSL F+ +D  E       G 
Sbjct: 290  KPAWLSVYDSLNVESQDSLGPITSSNLSNSADIAALEEDGSLRFFWIDYLEL-----DGK 344

Query: 354  LYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            +Y  GK+K        SCCV V+NMQR ++ +P     + DE    + D  E+ I P   
Sbjct: 345  IYFIGKLKDKKSGVWISCCVAVENMQRNLFCLPREKRHEQDE----DGDITETDIVPT-- 398

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
               ++DV      E+  +   L +  +    VKR+YAFG+ ++P  E   LK+ Y F +P
Sbjct: 399  ---MEDVYSDF--ELIRK--ELKIKKWRGKIVKRKYAFGEKDVPRDETQWLKVVYGFNEP 451

Query: 472  PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV 531
            P+P   +  N   + GT ++A EL ++KRK+ GP WL +   +     + +SWCK E+TV
Sbjct: 452  PIPPKAESPNIARIFGTSTNAFELLVLKRKIMGPCWLQVK--NPVVDNKGISWCKLEVTV 509

Query: 532  DSPKDIR-VSSSSKHVA-EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
              PKDI  +S +   +  + PP+TV ++ ++++ N R++  EI+  S       +ID P 
Sbjct: 510  SDPKDITPLSDTDPDIPKDTPPLTVMSLTIRSIVNHRENSREIICTSSRTWQNLQIDDPT 569

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
                 K P  +  F  VR LD   FP  F+  A   +  A S V    ++E  LLN+L+ 
Sbjct: 570  PPD--KLPCRVQTF--VRPLDK--FPPNFDARARASSRGAISPV----TNETMLLNQLIQ 619

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS 709
            E+YK+D DV++GH   G  LD+LLHR +  +V    WS++GR +RS  P         G 
Sbjct: 620  EIYKMDPDVILGHEFLGVSLDILLHRMRDLKV--KHWSRLGRFRRSRWP---------GI 668

Query: 710  GASPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+LCD  L S   + ++   ++SL+++ +T LN +R E+ P D    F
Sbjct: 669  GRQGTNLRFLNGRMLCD--LASDGAKSMIASTTWSLSEMCRTHLNFERPEIDPDDTASYF 726

Query: 767  Q----TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
                 T   ++E +++ E DA   M +   + +LPLT+QLTN++GN W KTL G RA+R 
Sbjct: 727  DGSLSTPNRMLEFVQHCELDAHYQMAIGSKVQILPLTKQLTNLAGNAWNKTLNGGRAERN 786

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            EY+LLH F   KYIVPDK TY K+T   KQ                     D+D      
Sbjct: 787  EYILLHEFHRLKYIVPDK-TYGKKTVPVKQ---------------------DDDDPDAPK 824

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------SPD 936
             KGKR   Y GGLV +PK+GL+D YIL++DFNSLYPSIIQEYNI FTTVE+      + +
Sbjct: 825  TKGKRD-KYKGGLVFDPKRGLWDTYILVMDFNSLYPSIIQEYNIDFTTVEQFEVEGENGE 883

Query: 937  GLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANS 993
              +P  P  KT  GVLP L+  LVQRRR VK+ MK  +AS  K+ Q DI+QQALKLTANS
Sbjct: 884  EKIPDPPPPKTAQGVLPRLIATLVQRRRQVKSLMKDKSASHAKLLQWDIKQQALKLTANS 943

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLGF  SRFYA+PLA L T +GREIL  T +L ++ LNL+V+YGDTDS+ ++SG  +
Sbjct: 944  MYGCLGFEYSRFYARPLAALTTYKGREILTHTRELAES-LNLDVVYGDTDSVFVNSGQTE 1002

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
            +++A  I+    + VN +YK LEIDLDG+++R+LLL+KKKYAA+KV+  +G   +V E K
Sbjct: 1003 LSEALKISASFKKTVNDRYKLLEIDLDGVFQRLLLLQKKKYAALKVE--EGGRTKV-EIK 1059

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GLDM RR++  LSK V  + L QILS    E VVE+IH  L  + +++R+G   +E+++I
Sbjct: 1060 GLDMKRREYCALSKNVSQYVLDQILSGEPTEIVVENIHEYLTTIGQNVRNGSTKVEEFII 1119

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
             K L K PE YPDAKNQPHVQVALR+K  G S     GD + YI C ++G SS S    A
Sbjct: 1120 FKRLGKNPEDYPDAKNQPHVQVALRMKSRGGS--ARNGDVISYIFCLDEGESS-SKTTQA 1176

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS 1293
             RA+HPDE+KK +G+  ID D+Y SQQ+ P + RLC +IEGT   RLA+CLGLDP +++ 
Sbjct: 1177 GRAKHPDEVKKSNGELKIDYDFYLSQQVLPPIERLCDTIEGTDRSRLAECLGLDPMRYRQ 1236

Query: 1294 KPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
              S          L   + D+ER++   P ++ C  C        +       V  +PS 
Sbjct: 1237 GNSGGSDERAFIPLDSQLSDQERFKDASPFLIQCRKCKVELSFSPINDREHSIV--QPS- 1293

Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
                        CP C         S   I  Q++ Q    + +YY+G  +CDD TC+  
Sbjct: 1294 ---------GFICPPC-----KAPFSLASIEVQLEVQIRKTIGLYYEGWTVCDDPTCRSR 1339

Query: 1414 TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
            T  +++        G  C     C G +  +YT+ ++Y QL Y+ +L D ++ ++
Sbjct: 1340 TRMMSV-------YGRRCLKQ-GCRGTVAFEYTDKEIYNQLRYYSYLFDGEKAMK 1386


>gi|383419303|gb|AFH32865.1| DNA polymerase alpha catalytic subunit [Macaca mulatta]
          Length = 1465

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1518 (35%), Positives = 813/1518 (53%), Gaps = 171/1518 (11%)

Query: 3    DEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEY 62
            D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E++Y
Sbjct: 15   DSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEEQY 69

Query: 63   DALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
              LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R  K
Sbjct: 70   SKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRNVK 127

Query: 122  RGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE 181
            +        V KPN   +   A  GK+      T+      SKD+ + +    ++    +
Sbjct: 128  KPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTETPQ 175

Query: 182  FAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD------------L 229
              P      +++RS+ ++   F    SV T++ + +    S     D             
Sbjct: 176  ITPPPVTILKKKRSIGASPNPF----SVHTSTAIPSGKIASPVSRKDPPLTPVPLKRAEF 231

Query: 230  INNFVQIQNCDVVEESKELKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK-LN 286
                +Q+++ +  +ES  +++E  +  E   T+  +   +  K  D+ +E  +E K+  +
Sbjct: 232  AGEPIQVESTEEEQESGAMEFEDGDFDEPMETEEVDLEPMAAKAWDQESEPAEEVKQEAD 291

Query: 287  AKISTEKD--PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSL 335
            +   T  D    L   + W        +  EG S  + QE + +          D++   
Sbjct: 292  SGKGTMSDLGRFLPDVSCWD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQVF 344

Query: 336  PFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
             FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P         
Sbjct: 345  HFYWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE------- 396

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
             MK++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   +
Sbjct: 397  -MKIDLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPD 448

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            +P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   
Sbjct: 449  VPEKSEY-LEVKYSAEIPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK-- 505

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
            S     Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI+
Sbjct: 506  SPQLLNQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEII 561

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
            + + +  H   +D         KP   SHF VV K    IFP  F +    +N K     
Sbjct: 562  AVAALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE--- 613

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
                ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLK
Sbjct: 614  --VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLK 669

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            RS MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +
Sbjct: 670  RSNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTE 722

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            R  +   D+  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +T
Sbjct: 723  RVVIPTEDIRNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRT 782

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   
Sbjct: 783  LMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEI 826

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
            D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R
Sbjct: 827  DGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQR 884

Query: 934  --------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQ 979
                    + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q
Sbjct: 885  VASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQ 944

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIY
Sbjct: 945  YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIY 1003

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V
Sbjct: 1004 GDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVV 1063

Query: 1100 Q-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ 
Sbjct: 1064 EPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIG 1123

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV YII
Sbjct: 1124 ENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYII 1182

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G    
Sbjct: 1183 C-----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAV 1236

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFD 1335
             +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +   
Sbjct: 1237 LIATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--- 1291

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
                  +I  +V +  S  + E + +R   + C   P            ++N++      
Sbjct: 1292 -----ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRR 1339

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
            F+  YY G ++C++ TC   T  L L+    +  G +C   P C    +R +Y++  LY 
Sbjct: 1340 FIKKYYDGWLICEEPTCGNRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSLYT 1393

Query: 1453 QLTYFCHLLDTQRGIEKM 1470
            QL ++ ++ D +  +EK+
Sbjct: 1394 QLCFYRYIFDAECALEKL 1411


>gi|355704674|gb|EHH30599.1| hypothetical protein EGK_20335 [Macaca mulatta]
          Length = 1468

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1520 (35%), Positives = 814/1520 (53%), Gaps = 171/1520 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDFTGVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD----------- 228
             +  P      +++RS+ ++   F    SV T++ + +    S     D           
Sbjct: 177  PQITPPPVTILKKKRSIGASPNPF----SVHTSTAIPSGKIASPVSRKDPPLTPVPLKRA 232

Query: 229  -LINNFVQIQNCDVVEESKELKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK- 284
                  +Q+++ +  +ES  +++E  +  E   T+  +   +  K  D+ +E  +E K+ 
Sbjct: 233  EFAGEPIQVESTEEEQESGAMEFEDGDFDEPMETEEVDLEPMAAKAWDQESEPAEEVKQE 292

Query: 285  LNAKISTEKD--PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDG 333
             ++   T  D    L   + W        +  EG S  + QE + +          D++ 
Sbjct: 293  ADSGKGTMSDLGRFLPDVSCWD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQ 345

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
               FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P       
Sbjct: 346  VFHFYWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE----- 399

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
               MK++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF  
Sbjct: 400  ---MKIDLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEI 449

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
             ++P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL + 
Sbjct: 450  PDVPEKSEY-LEVKYSAEIPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK 508

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
              S     Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NE
Sbjct: 509  --SPQLLNQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNE 562

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
            I++ + +  H   +D         KP   SHF VV K    IFP  F +    +N K   
Sbjct: 563  IIAVAALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE- 616

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
                  ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGR
Sbjct: 617  ----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGR 670

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN 751
            LKRS MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L 
Sbjct: 671  LKRSNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILK 723

Query: 752  KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
             +R  +   D+  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  
Sbjct: 724  TERVVIPTEDIRNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMS 783

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED 
Sbjct: 784  RTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDE 827

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
              D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV
Sbjct: 828  EIDGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 885

Query: 932  ER--------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKI 977
            +R        + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I
Sbjct: 886  QRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLI 945

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEV
Sbjct: 946  LQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEV 1004

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            IYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+
Sbjct: 1005 IYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAAL 1064

Query: 1098 KVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
             V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L++
Sbjct: 1065 VVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIE 1124

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            + E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y
Sbjct: 1125 IGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSY 1183

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            IIC       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G  
Sbjct: 1184 IIC-----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGID 1237

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSST 1333
               +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C + 
Sbjct: 1238 AVLIATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT- 1294

Query: 1334 FDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
                    +I  +V +  S  + E + +R   + C   P            ++N++    
Sbjct: 1295 -------ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDI 1340

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADL 1450
              F+  YY G ++C++ TC   T  L L+    +  G +C   P C    +R +Y++  L
Sbjct: 1341 RRFIKKYYDGWLICEEPTCGNRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSL 1394

Query: 1451 YKQLTYFCHLLDTQRGIEKM 1470
            Y QL ++ ++ D +  +EK+
Sbjct: 1395 YTQLCFYRYIFDAECALEKL 1414


>gi|109130218|ref|XP_001091195.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Macaca
            mulatta]
          Length = 1462

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1520 (35%), Positives = 814/1520 (53%), Gaps = 171/1520 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  VKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD----------- 228
             +  P      +++RS+ ++   F    SV T++ + +    S     D           
Sbjct: 171  PQITPPPVTILKKKRSIGASPNPF----SVHTSTAIPSGKIASPVSRKDPPLTPVPLKRA 226

Query: 229  -LINNFVQIQNCDVVEESKELKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK- 284
                  +Q+++ +  +ES  +++E  +  E   T+  +   +  K  D+ +E  +E K+ 
Sbjct: 227  EFAGEPIQVESTEEEQESGAMEFEDGDFDEPMETEEVDLEPMAAKAWDQESEPAEEVKQE 286

Query: 285  LNAKISTEKD--PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDG 333
             ++   T  D    L   + W        +  EG S  + QE + +          D++ 
Sbjct: 287  ADSGKGTMSDLGRFLPDVSCWD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQ 339

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
               FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P       
Sbjct: 340  VFHFYWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE----- 393

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
               MK++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF  
Sbjct: 394  ---MKIDLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEI 443

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
             ++P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL + 
Sbjct: 444  PDVPEKSEY-LEVKYSAEIPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK 502

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
              S     Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NE
Sbjct: 503  --SPQLLNQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNE 556

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
            I++ + +  H   +D         KP   SHF VV K    IFP  F +    +N K   
Sbjct: 557  IIAVAALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE- 610

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
                  ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGR
Sbjct: 611  ----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGR 664

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN 751
            LKRS MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L 
Sbjct: 665  LKRSNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILK 717

Query: 752  KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
             +R  +   D+  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  
Sbjct: 718  TERVVIPTEDIRNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMS 777

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED 
Sbjct: 778  RTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDE 821

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
              D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV
Sbjct: 822  EIDGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 879

Query: 932  ER--------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKI 977
            +R        + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I
Sbjct: 880  QRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLI 939

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEV
Sbjct: 940  LQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEV 998

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            IYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+
Sbjct: 999  IYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAAL 1058

Query: 1098 KVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
             V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L++
Sbjct: 1059 VVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIE 1118

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            + E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y
Sbjct: 1119 IGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSY 1177

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            IIC       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G  
Sbjct: 1178 IIC-----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGID 1231

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSST 1333
               +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C + 
Sbjct: 1232 AVLIATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT- 1288

Query: 1334 FDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
                    +I  +V +  S  + E + +R   + C   P            ++N++    
Sbjct: 1289 -------ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDI 1334

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADL 1450
              F+  YY G ++C++ TC   T  L L+    +  G +C   P C    +R +Y++  L
Sbjct: 1335 RRFIKKYYDGWLICEEPTCGNRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSL 1388

Query: 1451 YKQLTYFCHLLDTQRGIEKM 1470
            Y QL ++ ++ D +  +EK+
Sbjct: 1389 YTQLCFYRYIFDAECALEKL 1408


>gi|355757246|gb|EHH60771.1| hypothetical protein EGM_18627 [Macaca fascicularis]
          Length = 1468

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1516 (35%), Positives = 813/1516 (53%), Gaps = 163/1516 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDFTGVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    I DDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IADDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK--------ENSDLIN 231
             +  P      +++RS+ ++   F    S    S  + +  +  +        + ++   
Sbjct: 177  PQITPPPVTILKKKRSIGASPNPFSVHTSTAVPSGKIASPVSRKEPPLTPIPLKRAEFAG 236

Query: 232  NFVQIQNCDVVEESKELKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK-LNAK 288
              +Q+++ +  +ES  +++E  +  E   T+  +   +  K  D+ +E  +E K+  ++ 
Sbjct: 237  EPIQVESTEEEQESGAMEFEDGDFDEPMETEEVDLEPMAAKAWDQESEPAEEVKQEADSG 296

Query: 289  ISTEKD--PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPF 337
              T  D    L   + W        +  EG S  + QE + +          D++    F
Sbjct: 297  KGTMSDLGRFLPDVSCWD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQVFHF 349

Query: 338  YILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            Y LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          M
Sbjct: 350  YWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------M 400

Query: 396  KLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIP 455
            K++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P
Sbjct: 401  KIDLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVP 453

Query: 456  AGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
                Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S 
Sbjct: 454  EKSEY-LEVKYSAEIPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SP 510

Query: 516  CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSA 575
                Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ 
Sbjct: 511  QLLNQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAV 566

Query: 576  SVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLC 635
            + +  H   +D         KP   SHF VV K    IFP  F +    +N K       
Sbjct: 567  AALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE----- 616

Query: 636  CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
              ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS
Sbjct: 617  VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRS 674

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R 
Sbjct: 675  NMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERV 727

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
             +   D+  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL 
Sbjct: 728  VIPTEDIRNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLM 787

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D 
Sbjct: 788  GGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDG 831

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-- 933
            DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R  
Sbjct: 832  DT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVA 889

Query: 934  ------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLD 981
                  + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q D
Sbjct: 890  SEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYD 949

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGD
Sbjct: 950  IRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGD 1008

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ- 1100
            TDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+ 
Sbjct: 1009 TDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEP 1068

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E+
Sbjct: 1069 TSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGEN 1128

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            + +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV YIIC 
Sbjct: 1129 VLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYIIC- 1186

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
                  GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +
Sbjct: 1187 ----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLI 1241

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCP 1337
            A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +     
Sbjct: 1242 ATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT----- 1294

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
                +I  +V +  S  + E + +R   + C   P            ++N++      F+
Sbjct: 1295 ---ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFI 1344

Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQL 1454
              YY G ++C++ TC   T  L L+    +  G +C   P C    +R +Y++  LY QL
Sbjct: 1345 KKYYDGWLICEEPTCGNRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSLYTQL 1398

Query: 1455 TYFCHLLDTQRGIEKM 1470
             ++ ++ D +  +EK+
Sbjct: 1399 CFYRYIFDAECALEKL 1414


>gi|402909736|ref|XP_003917565.1| PREDICTED: DNA polymerase alpha catalytic subunit [Papio anubis]
          Length = 1465

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1514 (35%), Positives = 813/1514 (53%), Gaps = 163/1514 (10%)

Query: 3    DEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEY 62
            D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E++Y
Sbjct: 15   DSGSFVASRARREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDFTGVYEEVDEEQY 69

Query: 63   DALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
              LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R  K
Sbjct: 70   SKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRNVK 127

Query: 122  RGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE 181
            +        V KPN   +   A  GK+      T+      SKD+ + +    ++    +
Sbjct: 128  KPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTETPQ 175

Query: 182  FAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK--------ENSDLINNF 233
              P      +++RS+ ++   F    S    S  + +  +  +        + ++     
Sbjct: 176  ITPPPVTILKKKRSIGASPNPFSVHTSTAVPSGKIASPVSRKEPPLTPVPLKRAEFAGEP 235

Query: 234  VQIQNCDVVEESKELKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK-LNAKIS 290
            +Q+++ +  +ES  +++E  +  E   T+  +   +  K  D+ +E  +E K+  ++   
Sbjct: 236  IQVESTEEEQESGAMEFEDGDFDEPMETEEVHLEPMAAKAWDQESEPAEEVKQEADSGKG 295

Query: 291  TEKD--PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYI 339
            T  D    L   + W        +  EG S  + QE + +          D++    FY 
Sbjct: 296  TMSDLGRFLPDVSCWD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQVFHFYW 348

Query: 340  LDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKL 397
            LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK+
Sbjct: 349  LDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKI 399

Query: 398  EKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAG 457
            + +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P  
Sbjct: 400  DLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEK 452

Query: 458  ENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCP 517
              Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S   
Sbjct: 453  SEY-LEVKYSAEIPQLPQDLKGETFSHIFGTNTSSLELFLMNRKIKGPCWLEVK--SPQL 509

Query: 518  APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASV 577
              Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + 
Sbjct: 510  LNQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAVAA 565

Query: 578  VCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCE 637
            +  H   +D         KP   SHF VV K    IFP  F +    +N K         
Sbjct: 566  LVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VA 615

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS M
Sbjct: 616  ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNM 673

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  +
Sbjct: 674  PKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVI 726

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
               D+  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G 
Sbjct: 727  PTEDIRNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGG 786

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT
Sbjct: 787  RSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDT 830

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
            S   ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R    
Sbjct: 831  SK--YKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 888

Query: 934  ----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQ 983
                + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI+
Sbjct: 889  AQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIR 948

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTD
Sbjct: 949  QKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTD 1007

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FK 1102
            SIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   
Sbjct: 1008 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTS 1067

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ 
Sbjct: 1068 DGNYATKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVL 1127

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC   
Sbjct: 1128 NGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC--- 1183

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
                GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A 
Sbjct: 1184 --QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIAT 1240

Query: 1283 CLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAV 1339
             LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +       
Sbjct: 1241 WLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------- 1291

Query: 1340 CSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
              +I  +V +  S  + E + +R   + C   P            ++N++      F+  
Sbjct: 1292 -ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIKK 1343

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTY 1456
            YY G ++C++ TC   T  L L+    +  G +C   P C    +R +Y++  LY QL +
Sbjct: 1344 YYDGWLICEEPTCGNRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSLYTQLCF 1397

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1398 YRYIFDAECALEKL 1411


>gi|403415899|emb|CCM02599.1| predicted protein [Fibroporia radiculosa]
          Length = 1470

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1581 (34%), Positives = 796/1581 (50%), Gaps = 201/1581 (12%)

Query: 12   RRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRRE 71
            RR RG++    AE     K  R GG R+     +  + +  +YD V ED+Y ++V R R 
Sbjct: 6    RRERGSKVDKWAE----YKRARDGGGRA-----WKEEEDVSLYDEVTEDQYKSIV-RGRL 55

Query: 72   EARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRS-IKKQRIEKRGKKENNQN 130
                F++DD   GY D G ++   +     S  DE   G++S + K + + + K  +   
Sbjct: 56   AKDDFVIDDGVRGYMDNGIDDFEELEEYAES--DECRSGRKSKLSKSKGDSKTKARSRPK 113

Query: 131  VRKP--NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES--------ESVIDEVLA 180
               P    S+ A   ++   + +  + S      S   K+KE+            +    
Sbjct: 114  APPPEVTTSINAYRPIVSVDQETDFMASLMAEFDSNTSKIKEAAKSRKRKPSPAFEYAEG 173

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCD 240
              +P+  D    RR+ + N ++  + ++  ++  ++ +   ++  + DL+ N        
Sbjct: 174  NSSPNGHDSSVYRRANAYNYRTSYA-DADASSDGVLDDGLANIPSSDDLVMN-------- 224

Query: 241  VVEESKELKWESDNSTELTKRDNFVEVKEKVK---------DEVNEDV------KECKKL 285
                 K++K ES   T  T+R N +EV              D+++ D        E + L
Sbjct: 225  ---PKKKIKMESHGVTSATERINKLEVNSAASGTDGGDTSFDDIDMDAFMAVDEDELQAL 281

Query: 286  --------NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDD----- 332
                    + K+ + K   L  T G          LD+  S L+  ES     DD     
Sbjct: 282  TPQKAGLGHFKLESAKPAALEPTNGKYSAQERPKRLDDVPSWLSTYESLSTAPDDQLGQS 341

Query: 333  ------------------GSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVV 372
                              GS  FY LD  E     + G LYL GK   K   T  SCCV 
Sbjct: 342  LRTTNSSKAADISVLEKDGSFRFYWLDYLE-----HEGRLYLVGKTQDKVSRTWISCCVT 396

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            ++N+QR ++ +P           K+E+D E  ++        + DV     ++      +
Sbjct: 397  IENLQRNLFVLPRE--------RKMEEDDETGKLYETDVVPDMSDVF----SDFDRIRKH 444

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
              + ++    VKRRYAFG+ ++P GE+   K+ Y F++P LP +    +   + GT +SA
Sbjct: 445  AGIKSWKGKFVKRRYAFGEKDVPKGESQWFKVVYGFEEPQLPNNACSPSIARIFGTSTSA 504

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQ----RVSWCKYEITVDSPKDIRVSSSSKHVA- 547
             EL ++KRK+ GP WL I K      PQ     VSWCK E TV  PKDI   S +   A 
Sbjct: 505  FELLVLKRKIMGPCWLQIKK------PQVEHKGVSWCKMETTVSDPKDINPFSETDPQAP 558

Query: 548  -EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVV 606
             E+PP+T+ +++L+T+ N +++  E+V A+        +D P        P ++  F  V
Sbjct: 559  REIPPLTIMSLSLRTIVNHKENNREVVCATSRIWSNTDLDDPTPPEAL--PCLVRTF--V 614

Query: 607  RKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
            R LD   FP  F      R +  G  V+    +ER LL+ L+  ++K D DV+VGH   G
Sbjct: 615  RPLDR--FPPNFEV----RAAGNGKGVISTMKNERMLLSSLLATIHKADPDVIVGHEFLG 668

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLC 725
              LDVLLHR +  +  +  WS+IGR +RS+ P + R+G            M  + GRLLC
Sbjct: 669  VSLDVLLHRMRDLK--ADHWSRIGRFRRSKWPMIGRQGTN----------MKFMNGRLLC 716

Query: 726  DTFLCS-RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL----ESLMELIEYGE 780
            D    S + ++   ++SLT++ KT L  DR+++ P D    F +     E L+  + + E
Sbjct: 717  DLASDSAKGMISSTTWSLTEMCKTHLKSDRQDIDPDDTASYFDSSVSSPERLLTFVRHCE 776

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
             DA   M L   + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK
Sbjct: 777  LDAHYQMALASKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDK 836

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
                K     K+  +  +E                        K KR   Y GGLV EPK
Sbjct: 837  LWGKKAATAEKEMQDDDLE------------------GGGKATKSKRD-KYKGGLVFEPK 877

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG----LVPHLPSSKTT-GVLPELL 955
            +GL+DK+IL++DFNSLYPSIIQEYNI FTTV+R  D      +P  PSS    GVLP L+
Sbjct: 878  RGLWDKFILVMDFNSLYPSIIQEYNIDFTTVDRVEDEDGEEKIPEPPSSDVALGVLPRLI 937

Query: 956  KNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
              LV RRR VK+ MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L
Sbjct: 938  ATLVGRRRQVKSLMKDRKATQSQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAAL 997

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
             T +GREIL  T +L ++ L L+V+YGDTDS+ ++S + D+A+A  I+ +  + VN +Y+
Sbjct: 998  TTFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTDLAEALKISSEFKKAVNDRYR 1056

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             LEIDLDG+++R+LLL+KKKYAA+KV+  DG      E KGLDM RR++  LSK V  + 
Sbjct: 1057 LLEIDLDGIFQRLLLLQKKKYAAIKVE--DGTRTST-EVKGLDMKRREYCNLSKNVSQYV 1113

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L QILS    E VVE +H+ L  + ED+R+G++ LE +++ K L K PE YPD K+QPHV
Sbjct: 1114 LDQILSGEETETVVERVHDYLTTMGEDVRAGKIKLEDFIVFKRLGKNPEDYPDGKSQPHV 1173

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            QVALR+K  G +    +GD +PY+ C      S  S   A RARHPDE+++   +  ID 
Sbjct: 1174 QVALRMKVRGGT--ARSGDVIPYVFCLNDNNESAKSAQ-ADRARHPDEVRRAGAELRIDY 1230

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD 1313
            +YY SQQI P + RLC  IEGT   RLA+CLGLD S++++   E+       S    + D
Sbjct: 1231 EYYLSQQILPPIERLCEPIEGTDRARLAECLGLDASRYRTSAGES-EERYFGSFDSLISD 1289

Query: 1314 EERYRGCEPLILSCPSCSSTFD-CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEE 1372
             ER++ C+P I+ C SC       P       +  S  P+             CP C   
Sbjct: 1290 AERFKDCDPFIVRCRSCQGQVAYAPISDRGSTLLSSAGPA-------------CPAC--H 1334

Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCP 1432
               G+ S   +  Q++ Q    V  +Y+G M+CDD  C   T     R++G   R  +  
Sbjct: 1335 THMGQPS---LQVQLEVQIREHVGRFYEGWMVCDDPACGNRT-----RMMGVYGRRCLQQ 1386

Query: 1433 NYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALA 1492
                C G +  +Y++A LY QL Y+  L D ++ ++    + K  L   +N     +   
Sbjct: 1387 G---CRGTVTFEYSDAQLYTQLRYYSSLFDGKKALDAATGARKEELSALVNVQAEFLHAM 1443

Query: 1493 ASTVQRIRERCAYGWVKLNDI 1513
            ++TV +  ++C   WV L  +
Sbjct: 1444 SATVDKYLDQCGRRWVNLTQL 1464


>gi|35568|emb|CAA29920.1| unnamed protein product [Homo sapiens]
          Length = 1462

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1514 (35%), Positives = 820/1514 (54%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD  + +    ++   
Sbjct: 123  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDGLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RS+ ++   F SV++          S  S KE          ++  
Sbjct: 171  PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 230  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDKESEPAEEVKQ--- 285

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 286  EADSGKGTVSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 344

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 345  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 395

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P 
Sbjct: 396  IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 448

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
               Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL + K ++ 
Sbjct: 449  KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKKSTAL 507

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
              P  VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 508  NQP--VSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 561

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 562  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 611

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 612  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 669

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 670  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 722

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 723  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 782

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 783  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 826

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 827  T--NKYKKGRKKGAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 884

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
                 + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI
Sbjct: 885  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDT
Sbjct: 945  RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1003

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
            DSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+  
Sbjct: 1004 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1063

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++
Sbjct: 1064 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1123

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
             +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC  
Sbjct: 1124 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1180

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A
Sbjct: 1181 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1236

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
              LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +      
Sbjct: 1237 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1288

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  +V +  S  + E + +R   + C   P            ++N++      F+ 
Sbjct: 1289 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1339

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL +
Sbjct: 1340 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1394

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1395 YRYIFDAECALEKL 1408


>gi|410291608|gb|JAA24404.1| polymerase (DNA directed), alpha 1, catalytic subunit [Pan
            troglodytes]
          Length = 1468

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1514 (35%), Positives = 820/1514 (54%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R +      R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   LSDSGSFVSSRARPKKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RS+ ++   F SV++          S  S KE          ++  
Sbjct: 177  PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 235

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 236  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDQESEPAEEVKQ--- 291

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 292  EADSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 350

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 351  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 401

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P 
Sbjct: 402  IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 454

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
               Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S  
Sbjct: 455  KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 511

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 512  LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 567

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 568  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 617

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 618  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 675

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 676  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 728

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 729  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 788

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 789  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 832

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 833  T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 890

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
                 + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI
Sbjct: 891  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 950

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDT
Sbjct: 951  RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1009

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
            DSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+  
Sbjct: 1010 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1069

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++
Sbjct: 1070 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1129

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
             +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC  
Sbjct: 1130 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1186

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A
Sbjct: 1187 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1242

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
              LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +      
Sbjct: 1243 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1294

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  +V +  S  + E + +R   + C   P            ++N++      F+ 
Sbjct: 1295 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1345

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL +
Sbjct: 1346 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1400

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1401 YRYIFDAECALEKL 1414


>gi|410335293|gb|JAA36593.1| polymerase (DNA directed), alpha 1, catalytic subunit [Pan
            troglodytes]
          Length = 1468

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1514 (35%), Positives = 819/1514 (54%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RS+ ++   F SV++          S  S KE          ++  
Sbjct: 177  PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 235

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 236  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDQESEPAEEVKQ--- 291

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 292  EADSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 350

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 351  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 401

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P 
Sbjct: 402  IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 454

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
               Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S  
Sbjct: 455  KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 511

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 512  LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 567

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 568  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 617

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 618  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 675

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 676  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 728

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 729  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 788

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 789  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 832

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 833  T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 890

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
                 + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI
Sbjct: 891  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 950

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDT
Sbjct: 951  RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1009

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
            DSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+  
Sbjct: 1010 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1069

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++
Sbjct: 1070 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1129

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
             +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC  
Sbjct: 1130 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1186

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A
Sbjct: 1187 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1242

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
              LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +      
Sbjct: 1243 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1294

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  +V +  S  + E + +R   + C   P            ++N++      F+ 
Sbjct: 1295 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1345

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL +
Sbjct: 1346 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1400

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1401 YRYIFDAECALEKL 1414


>gi|380797015|gb|AFE70383.1| DNA polymerase alpha catalytic subunit, partial [Macaca mulatta]
          Length = 1438

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1500 (35%), Positives = 808/1500 (53%), Gaps = 171/1500 (11%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
             R EALERLK       ++G+   Y ++    +Y+ V E++Y  LV  R+++    IVDD
Sbjct: 6    GRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDW--IVDD 58

Query: 81   DGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLT 139
            DG+GY ++G+E  D  +      + ++  DG+   K +R  K+        V KPN   +
Sbjct: 59   DGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRNVKKPA------VTKPNNIKS 112

Query: 140  AAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSN 199
               A  GK+      T+      SKD+ + +    ++    +  P      +++RS+ ++
Sbjct: 113  MFIACAGKK------TADKAVDLSKDDLLGDILQDLNTETPQITPPPVTILKKKRSIGAS 166

Query: 200  IKSFVSVNSVKTNSQLVTNSTNSVKENSD------------LINNFVQIQNCDVVEESKE 247
               F    SV T++ + +    S     D                 +Q+++ +  +ES  
Sbjct: 167  PNPF----SVHTSTAIPSGKIASPVSRKDPPLTPVPLKRAEFAGEPIQVESTEEEQESGA 222

Query: 248  LKWESDNSTEL--TKRDNFVEVKEKVKDEVNEDVKECKK-LNAKISTEKD--PLLSATAG 302
            +++E  +  E   T+  +   +  K  D+ +E  +E K+  ++   T  D    L   + 
Sbjct: 223  MEFEDGDFDEPMETEEVDLEPMAAKAWDQESEPAEEVKQEADSGKGTMSDLGRFLPDVSC 282

Query: 303  WKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILDAHEQLSGANMGT 353
            W        +  EG S  + QE + +          D++    FY LDA+E       G 
Sbjct: 283  WD-------IDQEGDSSFSVQEVQVDSSQLPLVKGADEEQVFHFYWLDAYEDQYN-QPGV 334

Query: 354  LYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++ +  +   +P++ 
Sbjct: 335  VFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKIDLNTGKETGTPVS- 385

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
               ++DV      +IA +     +  +   PV++ YAF   ++P    Y L++ Y  + P
Sbjct: 386  ---MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKSEY-LEVKYSAEIP 438

Query: 472  PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV 531
             LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S     Q +SWCK E   
Sbjct: 439  QLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLLNQPISWCKVEAMA 496

Query: 532  DSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
              P  + V          PP+ V A ++KT+ N +   NEI++ + +  H   +D     
Sbjct: 497  LKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAVAALVHHSFALDKAA-- 550

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
                KP   SHF VV K    IFP  F +    +N K         ++ER LL   + ++
Sbjct: 551  ---PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VAATERTLLGFFLAKV 602

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
            +K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MPKL  GR+ FG   
Sbjct: 603  HKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMPKL-GGRSGFGE-- 657

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES 771
                 +   GR++CD  + +++L+R  SY L++L +  L  +R  +   D+  M+     
Sbjct: 658  ----RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPTEDIRNMYSESSQ 713

Query: 772  LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR 831
            L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF 
Sbjct: 714  LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 773

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
               YIVPDK  + K                  ++L +ED   D DT  N ++KG++  AY
Sbjct: 774  ENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDT--NKYKKGRKKAAY 815

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--------SPDG---LVP 940
            AGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R        + DG    +P
Sbjct: 816  AGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIP 875

Query: 941  HLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGC 997
             LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q+ALKLTANSMYGC
Sbjct: 876  ELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGC 935

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIMI++   ++ + 
Sbjct: 936  LGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEV 994

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLD 1116
              +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG      E KGLD
Sbjct: 995  FKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPMSDGNYATKQELKGLD 1054

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            +VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +G V + ++ I K 
Sbjct: 1055 IVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKA 1114

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK P+ YPD K+ PHV VAL +   G      AGDTV YIIC       GS++  +QRA
Sbjct: 1115 LTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYIIC-----QDGSNLTASQRA 1168

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
              P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LGLDP++F+    
Sbjct: 1169 YAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFRV--H 1225

Query: 1297 ETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
                 + + +LL     + DEE+YR CE     CP+C +         +I  +V +  S 
Sbjct: 1226 HYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--------ENIYDNVFDG-SG 1276

Query: 1354 PETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCK 1411
             + E + +R   + C   P            ++N++      F+  YY G ++C++ TC 
Sbjct: 1277 TDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIKKYYDGWLICEEPTCG 1330

Query: 1412 YTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLDTQRGIEKM 1470
              T  L L+    +  G +C   P C    +R +Y++  LY QL ++ ++ D +  +EK+
Sbjct: 1331 NRTRHLPLQF---SRTGPLC---PACMKATLRPEYSDKSLYTQLCFYRYIFDAECALEKL 1384


>gi|397497681|ref|XP_003819634.1| PREDICTED: DNA polymerase alpha catalytic subunit [Pan paniscus]
          Length = 1462

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1514 (35%), Positives = 819/1514 (54%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RS+ ++   F SV++          S  S KE          ++  
Sbjct: 171  PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 230  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDQESEPAEEVKQ--- 285

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 286  EADSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 344

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 345  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 395

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P 
Sbjct: 396  IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 448

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
               Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S  
Sbjct: 449  KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 505

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 506  LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 561

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 562  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 611

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 612  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 669

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 670  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 722

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 723  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 782

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 783  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 826

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 827  T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 884

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
                 + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI
Sbjct: 885  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDT
Sbjct: 945  RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1003

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
            DSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+  
Sbjct: 1004 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1063

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++
Sbjct: 1064 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1123

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
             +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC  
Sbjct: 1124 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1180

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A
Sbjct: 1181 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1236

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
              LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +      
Sbjct: 1237 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1288

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  +V +  S  + E + +R   + C   P            ++N++      F+ 
Sbjct: 1289 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1339

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL +
Sbjct: 1340 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1394

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1395 YRYIFDAECALEKL 1408


>gi|302803544|ref|XP_002983525.1| hypothetical protein SELMODRAFT_422725 [Selaginella moellendorffii]
 gi|300148768|gb|EFJ15426.1| hypothetical protein SELMODRAFT_422725 [Selaginella moellendorffii]
          Length = 935

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/917 (47%), Positives = 562/917 (61%), Gaps = 187/917 (20%)

Query: 426  IANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSL 485
            ++ +L+ LNVS + + PVKR YAF + ++ +G +Y  K++YPFKDP LP DL+G +F + 
Sbjct: 144  LSEKLMELNVSKFSMIPVKRSYAFDRMDVRSGAHYYFKLSYPFKDPTLPGDLRGAHFTN- 202

Query: 486  LGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKH 545
                                                +SWCK E++VDSPKD+   S+ K 
Sbjct: 203  ------------------------------------ISWCKVEVSVDSPKDVANISTLKP 226

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
            V+E+P + V +I+LKTV N++Q++NEIVSASVV C   K+D PM  SEW K  ML HF++
Sbjct: 227  VSEIPRLIVASISLKTVVNQKQNLNEIVSASVVFCEHVKVDPPMPQSEWNKQEMLEHFSI 286

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERAL-LNRLMIELYKLDSDVLVGHNI 664
            VRKLDGG++PMGF+ E         S +       +A+ L  L+I++Y            
Sbjct: 287  VRKLDGGVYPMGFSSEV--------SLIFLRFLHTKAMRLRHLLIDVY------------ 326

Query: 665  SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLL 724
                        Q C+VPS++ S++GRLKRS+MP+L  G   FG GA PG+MSC+AGRLL
Sbjct: 327  ------------QACKVPSNVRSRVGRLKRSQMPRLVGGGNNFGGGAGPGVMSCVAGRLL 374

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAW 784
            CDT+L SR+L++EVSY+LTQL+K+QL K+RKE+ P ++  MFQT  +L ELI+ GETDAW
Sbjct: 375  CDTYLSSRELVKEVSYTLTQLSKSQLGKERKEISPSEIPNMFQTSSTLFELIQSGETDAW 434

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            LS+ LMFHLSVLPLTRQLTNI+GNLW KTLQGARAQRV+YLLLH F  +KYIVPDK +  
Sbjct: 435  LSLSLMFHLSVLPLTRQLTNINGNLWSKTLQGARAQRVQYLLLHEFYGRKYIVPDKVSGS 494

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            ++ K          ++    +   +D +F+ D++     K K+ PAY GGLVLEPKKGLY
Sbjct: 495  EKEK----------DNETKRKTAQQDEDFEPDSAVE--AKNKKAPAYTGGLVLEPKKGLY 542

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
                     N+ YPSIIQEYNICFTTVERS DG +  LP++   GVLP+           
Sbjct: 543  ---------NNFYPSIIQEYNICFTTVERSSDGSISSLPNADAPGVLPQ----------- 582

Query: 965  VKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            VK W+ KT   LK QQ+DIQQQALKLTANSMYGCLGF NSRFYAK +AELIT Q      
Sbjct: 583  VKQWLKKTTDVLKYQQMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELITSQ------ 636

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
                                                        VNKK+K LEIDLDG++
Sbjct: 637  --------------------------------------------VNKKHKLLEIDLDGVF 652

Query: 1084 KRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            KRMLLLKKKKYA VKV+   DG   EV                +K   DF          
Sbjct: 653  KRMLLLKKKKYACVKVETSADGKLREV----------------NKFFFDF---------- 686

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             +DVV++IH+ L K+Q+DMR+G++ LEKYVITK+L+K PE YPD+KNQPHVQVALR KQ 
Sbjct: 687  -QDVVDAIHDKLRKLQDDMRNGRIDLEKYVITKSLSKLPEDYPDSKNQPHVQVALRRKQE 745

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
             +   C  GDT+PY+ICC++G      V + +RARHPD+LK G G W ID+DYY SQQIH
Sbjct: 746  CHK--CFPGDTIPYVICCQEGV---LGVPLTERARHPDKLKAGGGGWTIDVDYYLSQQIH 800

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKP-SETMSSDPSSSLLFAVGDEERYRGCE 1321
            P+VSRLC  IEGT P  +ADCLGLDPSKFQ    S T+  + +      + DE+RY  C+
Sbjct: 801  PIVSRLCTLIEGTDPSHIADCLGLDPSKFQQHSVSTTLDKEDALVATSVLDDEDRYNRCK 860

Query: 1322 PLILSCPSCSSTFDCPA 1338
             L L C SC++ +  P 
Sbjct: 861  ALELLCSSCAARYPFPG 877


>gi|403263646|ref|XP_003924130.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2 [Saimiri
            boliviensis boliviensis]
          Length = 1462

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1512 (35%), Positives = 817/1512 (54%), Gaps = 155/1512 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R          EALE+LK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRARREKKSKKGCQEALEKLKK-----AKAGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDVLDAGEKGKDGKAHNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  LKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTEK 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSF-----VSVNSVKTNSQLVTNS---TNSVKENSDLIN 231
             +  P      ++R S+ +++  F      +V+S K    +       T    + ++   
Sbjct: 171  PQITPPPVMILKKRTSIGASLNPFSVHTPTAVSSGKIAFHVSRKEPPLTPVPPKRAEFTG 230

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKI 289
              VQ ++ +  +ES  +++E  +  E  + +  +   V  K  D+ +E  +E K+   ++
Sbjct: 231  ELVQAESTEEEQESGPMEFEDGDFDEPMEAEEVDLEPVAAKTWDQESEPAEEVKQ---EV 287

Query: 290  STEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYIL 340
               K  +    + + +VS  + V  EG S  + QE + +          D++    FY L
Sbjct: 288  DPGKGTMSYLGSVFPDVSCWD-VDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWL 346

Query: 341  DAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            DA+E       G +++FGKV  ++  TH SCCV+VKN++R +Y +P          MK++
Sbjct: 347  DAYEDQYN-QPGVVFMFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKID 397

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P   
Sbjct: 398  LNTGKETRTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKS 450

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S    
Sbjct: 451  EY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLL 507

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + +
Sbjct: 508  NQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMRNAKNHQNEIIAIAAL 563

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              H   +D    AS   +P   SHF VV K    IFP  F +E   +N K         +
Sbjct: 564  VHHSFALDK---AS--PQPPFQSHFCVVSKPQDCIFPYAFKEEIEKKNVKVE-----VAA 613

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MP
Sbjct: 614  TERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMP 671

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  + 
Sbjct: 672  KL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERAVIP 724

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R
Sbjct: 725  VENIRNMYSESSQLLYLLEHTWIDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGR 784

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            ++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT 
Sbjct: 785  SERNEFLLLHAFYENNYIVPDKQIFRKSQ----------------QKLGDEDEEIDGDT- 827

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----- 933
             N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R     
Sbjct: 828  -NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAAEA 886

Query: 934  ---SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQ 984
               + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q
Sbjct: 887  QKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQ 946

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 947  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDS 1005

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-D 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1006 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTLD 1065

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G F + QILS++S + +VE+I   L+++ E++ +
Sbjct: 1066 GNYVTKQELKGLDIVRRDWCDLAKDTGSFVIGQILSDQSRDTIVENIQKRLIEIGENVLN 1125

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1126 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1180

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1181 -QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATW 1238

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +        
Sbjct: 1239 LGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCRCPTCGT-------- 1288

Query: 1341 SSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             +I  +V +  S  + E + +R   + C   P            ++N++      F+  Y
Sbjct: 1289 ENIYDNVFDG-SGTDMEPSLYRCSNIDCNASPLTFTV------QLSNKLIMDIRRFIKKY 1341

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ 
Sbjct: 1342 YDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYR 1396

Query: 1459 HLLDTQRGIEKM 1470
            ++ D +  +EK+
Sbjct: 1397 YIFDVECALEKL 1408


>gi|332224116|ref|XP_003261212.1| PREDICTED: DNA polymerase alpha catalytic subunit [Nomascus
            leucogenys]
          Length = 1462

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1512 (35%), Positives = 815/1512 (53%), Gaps = 155/1512 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTAVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  VKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK--------ENSDLIN 231
             +  P      +++RS+ ++   F    ++   S  + +  +  +        E ++   
Sbjct: 171  PQITPPPVMILKKKRSIGASPNPFSVHTTMAVPSGKIASPVSRKEPPLTPVPLERAEFAG 230

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKI 289
            + VQ++  +  +ES  +++E  +  E  + +  +   V  K  D+ +E  +E K+   + 
Sbjct: 231  DDVQVETIEEEQESGAMEFEDGDFDEPMEAEEVDLEPVAAKTWDQESEPGEEVKQ---EA 287

Query: 290  STEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYIL 340
             + K  +    +   +VS  + +  EG S  + QE + +          D +    FY L
Sbjct: 288  DSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADGEQVFHFYWL 346

Query: 341  DAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            DA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++
Sbjct: 347  DAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKID 397

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P   
Sbjct: 398  LNTGKETETPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKS 450

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S    
Sbjct: 451  EY-LELKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLL 507

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + +
Sbjct: 508  NQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMAAL 563

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              H   +D         KP   SHF VV K    IFP  F +    +N K         +
Sbjct: 564  VHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VAA 613

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MP
Sbjct: 614  TERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMP 671

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  + 
Sbjct: 672  KL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIP 724

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R
Sbjct: 725  MENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGR 784

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            ++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT 
Sbjct: 785  SERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDT- 827

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----- 933
             N ++KG++  AY GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R     
Sbjct: 828  -NKYKKGRKKAAYVGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEA 886

Query: 934  ---SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQ 984
               + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q
Sbjct: 887  QKVTEDGEQQQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQ 946

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 947  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDS 1005

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1006 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSD 1065

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +
Sbjct: 1066 GNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLN 1125

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1126 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1180

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1181 -QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLVATW 1238

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +        
Sbjct: 1239 LGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT-------- 1288

Query: 1341 SSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             +I  +V +  S  + E + +R   + C   P            ++N++      F+  Y
Sbjct: 1289 ENIYDNVFDG-SGTDMEPSLYRCSNVDCKASPLTFTV------QLSNKLIMDIRRFIKKY 1341

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ 
Sbjct: 1342 YDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYR 1396

Query: 1459 HLLDTQRGIEKM 1470
            ++ D +  +EK+
Sbjct: 1397 YIFDAECALEKL 1408


>gi|403263644|ref|XP_003924129.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 1 [Saimiri
            boliviensis boliviensis]
          Length = 1468

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1512 (35%), Positives = 817/1512 (54%), Gaps = 155/1512 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R          EALE+LK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGCQEALEKLKK-----AKAGEKYKYEVEDFTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDVLDAGEKGKDGKAHNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  LKKPA------VTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTEK 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSF-----VSVNSVKTNSQLVTNS---TNSVKENSDLIN 231
             +  P      ++R S+ +++  F      +V+S K    +       T    + ++   
Sbjct: 177  PQITPPPVMILKKRTSIGASLNPFSVHTPTAVSSGKIAFHVSRKEPPLTPVPPKRAEFTG 236

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKI 289
              VQ ++ +  +ES  +++E  +  E  + +  +   V  K  D+ +E  +E K+   ++
Sbjct: 237  ELVQAESTEEEQESGPMEFEDGDFDEPMEAEEVDLEPVAAKTWDQESEPAEEVKQ---EV 293

Query: 290  STEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYIL 340
               K  +    + + +VS  + V  EG S  + QE + +          D++    FY L
Sbjct: 294  DPGKGTMSYLGSVFPDVSCWD-VDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWL 352

Query: 341  DAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            DA+E       G +++FGKV  ++  TH SCCV+VKN++R +Y +P          MK++
Sbjct: 353  DAYEDQYN-QPGVVFMFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKID 403

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P   
Sbjct: 404  LNTGKETRTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKS 456

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S    
Sbjct: 457  EY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLL 513

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + +
Sbjct: 514  NQPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMRNAKNHQNEIIAIAAL 569

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              H   +D    AS   +P   SHF VV K    IFP  F +E   +N K         +
Sbjct: 570  VHHSFALDK---AS--PQPPFQSHFCVVSKPQDCIFPYAFKEEIEKKNVKVE-----VAA 619

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MP
Sbjct: 620  TERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMP 677

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  + 
Sbjct: 678  KL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERAVIP 730

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R
Sbjct: 731  VENIRNMYSESSQLLYLLEHTWIDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGR 790

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            ++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT 
Sbjct: 791  SERNEFLLLHAFYENNYIVPDKQIFRKSQ----------------QKLGDEDEEIDGDT- 833

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----- 933
             N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R     
Sbjct: 834  -NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAAEA 892

Query: 934  ---SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQ 984
               + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q
Sbjct: 893  QKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQ 952

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 953  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDS 1011

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-D 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1012 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTLD 1071

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G F + QILS++S + +VE+I   L+++ E++ +
Sbjct: 1072 GNYVTKQELKGLDIVRRDWCDLAKDTGSFVIGQILSDQSRDTIVENIQKRLIEIGENVLN 1131

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1132 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1186

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1187 -QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATW 1244

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +        
Sbjct: 1245 LGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCRCPTCGT-------- 1294

Query: 1341 SSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             +I  +V +  S  + E + +R   + C   P            ++N++      F+  Y
Sbjct: 1295 ENIYDNVFDG-SGTDMEPSLYRCSNIDCNASPLTFTV------QLSNKLIMDIRRFIKKY 1347

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ 
Sbjct: 1348 YDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYR 1402

Query: 1459 HLLDTQRGIEKM 1470
            ++ D +  +EK+
Sbjct: 1403 YIFDVECALEKL 1414


>gi|71020891|ref|XP_760676.1| hypothetical protein UM04529.1 [Ustilago maydis 521]
 gi|46100219|gb|EAK85452.1| hypothetical protein UM04529.1 [Ustilago maydis 521]
          Length = 1667

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1224 (39%), Positives = 673/1224 (54%), Gaps = 162/1224 (13%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGP 387
            +DD SL FY LD    L G N G +YL GKVK   +  + SCC+ V  ++RC++ +P   
Sbjct: 467  EDDKSLFFYWLD---YLEGEN-GIVYLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRS- 521

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN----VSNYIVSPV 443
                    +LE   E  R  P+             + EI ++   L+    +  ++   V
Sbjct: 522  -------KQLENGHETDR--PVG------------EDEIYDEFEELSAKHGIKGFLSKWV 560

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF QA +PA  NY +KI Y F +P LP D KG+ F    GT++S  EL +VKR++ 
Sbjct: 561  TRKYAFEQAGVPAESNY-MKIRYGFDEPQLPFDFKGKTFSKAFGTNTSPFELLVVKRRIF 619

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKT 561
            GPSWL IS  S       +SWCK E+++D PKDI   S +   +  E PP+TV +I ++T
Sbjct: 620  GPSWLKISNASLAEGSTPISWCKMEVSIDDPKDISPISDADTTSPRETPPLTVMSIAIRT 679

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
            V N +++  E+V+ S       +I+ P        P  L  S FT VR L G +FP GF 
Sbjct: 680  VVNHKENKQELVAVSARTWTDHQIEDPT------PPEQLPCSVFTAVRPL-GTMFPPGFE 732

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     + G   +     ER LLN L+ ++Y  D DV+VGH  +G  LDVLLHR +  
Sbjct: 733  AEA-----RKGRIKIHTLKYERMLLNALLAQIYNADPDVIVGHEFNGVSLDVLLHRMRDL 787

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLR 736
            R  +  WS++GR +R + PKL++G            +  +AGRL+CD  L S   + ++ 
Sbjct: 788  R--ADHWSRVGRFRRPKWPKLKQGLN----------LKILAGRLVCD--LASDNGKSMIT 833

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL----ESLMELIEYGETDAWLSMELMFH 792
              ++SLT++  T L   R+++ P +    F +L    E LM  + + E D +  M +   
Sbjct: 834  STTWSLTEMCGTHLKIQREDIDPEETASFFDSLAPSPERLMNFVRHCEVDTFFQMAIAAK 893

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM--- 849
            + +LPLT+QLTN++GN W KTL G RA+R EY+LLH F  +KYI PDK +  ++ ++   
Sbjct: 894  VQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFHRQKYICPDKISAWEKKQIQQA 953

Query: 850  ------AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                  A+ +SN G  D +              T+  + +K K    + GGLV EPK+GL
Sbjct: 954  AELKAKARAKSNGGAADSSAS------------TTAANSKKDK----FKGGLVFEPKRGL 997

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSP-DGL------------------------ 938
            +DKYIL++DFNSLYPSIIQE+NI FTTVER P  G+                        
Sbjct: 998  WDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGIEDDEIGVAAATASSDTAGEAGADA 1057

Query: 939  ------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWM--KTASGLKIQQLDIQQQALKL 989
                  +P +PSS    GVLP ++  LV RRR VK+ M  K+A+  ++ Q +I+Q ALKL
Sbjct: 1058 AADVDKIPDVPSSDVEQGVLPRIIAQLVARRRQVKSLMKDKSATPSQLLQWNIKQLALKL 1117

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLGF NSRFYA+PLA L T +GREIL +T DL ++ L L+VIYGDTDS+MI++
Sbjct: 1118 TANSMYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESML-LDVIYGDTDSVMINT 1176

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
               +  +A  I  +  + VN++Y+ LEID+DG+++RMLLL+KKKYAAV V  +     E+
Sbjct: 1177 NATEYREALRIGQEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVLVDEEGKRSTEI 1236

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
               KGLDM RR++S LSK V ++ L QILS ++ E VVE IH  L  +   ++ G+V L+
Sbjct: 1237 ---KGLDMKRREYSALSKNVSNYVLEQILSGQATELVVEHIHEYLSDISTKIKMGEVGLD 1293

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
             ++I K L K PE YPD K+QPHVQVALR+K  G       GD +PYI C  +  +S + 
Sbjct: 1294 DFIIYKRLGKNPEDYPDVKSQPHVQVALRMKTRG--GNARMGDVIPYIFCLGEDGTSSTK 1351

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
               A+RA HPDEL++ D +  ID ++Y + QI P V RLC SIEGT   RLA+CLGLDPS
Sbjct: 1352 TAQAERAHHPDELRRKDSELKIDYEHYLALQILPPVERLCESIEGTDRSRLAECLGLDPS 1411

Query: 1290 KFQSKPSETMSSDPSSSLLFA-----VGDEERYRGCEPLILSCPSC--SSTFDCPA--VC 1340
            K+         S  +    FA     + DE R+  CEPL L+CPSC  SSTF  PA    
Sbjct: 1412 KYSHVSHSGAGSGGAVGREFATLDSQIPDEVRFAQCEPLKLTCPSCRESSTFLGPAHRAA 1471

Query: 1341 SSICMSVSEKPSKPETEYNFWRT--LRCPKCPEEVEAGRISP-GMIANQVKRQADGFVSM 1397
            SS    + +  +   +E N   T  +RC          R+ P   +A Q++     FV  
Sbjct: 1472 SSAIKVLGDSTNTQRSEPNAISTKGIRC----TNAACQRMLPLATMAIQLELAIRSFVER 1527

Query: 1398 YYKGLMMCDDETCKYTT--CSLNLR---LIGDAERG------TVCPNYPRCNGRLVRKYT 1446
            YY G   C D  C   T   S+  +    + DA+        +   ++  C GR+   Y 
Sbjct: 1528 YYAGWTECSDPNCGSRTRLASVYAKRCVAVHDAKSAALLDATSTTGSHLACRGRVEPVYR 1587

Query: 1447 EADLYKQLTYFCHLLDTQRGIEKM 1470
            +  LY QL Y   L D+ R  EK+
Sbjct: 1588 DKQLYDQLIYLESLFDSSRIREKV 1611


>gi|106507301|ref|NP_058633.2| DNA polymerase alpha catalytic subunit [Homo sapiens]
 gi|60392197|sp|P09884.2|DPOLA_HUMAN RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
            Full=DNA polymerase alpha catalytic subunit p180
 gi|30089008|gb|AAP13534.1| polymerase (DNA directed), alpha [Homo sapiens]
 gi|119619434|gb|EAW99028.1| polymerase (DNA directed), alpha [Homo sapiens]
          Length = 1462

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1514 (35%), Positives = 818/1514 (54%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD  + +    ++   
Sbjct: 123  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDGLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RS+ ++   F SV++          S  S KE          ++  
Sbjct: 171  PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 230  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDKESEPAEEVKQ--- 285

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 286  EADSGKGTVSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 344

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 345  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 395

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P 
Sbjct: 396  IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 448

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
               Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S  
Sbjct: 449  KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 505

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 506  LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 561

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 562  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 611

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 612  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 669

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 670  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 722

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 723  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 782

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 783  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 826

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 827  T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 884

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
                 + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI
Sbjct: 885  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDT
Sbjct: 945  RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1003

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
            DSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+  
Sbjct: 1004 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1063

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++
Sbjct: 1064 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1123

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
             +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC  
Sbjct: 1124 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1180

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A
Sbjct: 1181 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1236

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
              LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +      
Sbjct: 1237 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1288

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  +V +  S  + E + +R   + C   P            ++N++      F+ 
Sbjct: 1289 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1339

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL +
Sbjct: 1340 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1394

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D +  +EK+
Sbjct: 1395 YRYIFDAECALEKL 1408


>gi|426395441|ref|XP_004063981.1| PREDICTED: DNA polymerase alpha catalytic subunit [Gorilla gorilla
            gorilla]
          Length = 1449

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1512 (35%), Positives = 817/1512 (54%), Gaps = 155/1512 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK--------ENSDLIN 231
             +  P      +++RS+ ++   F    +    S  + +  +  +        + ++   
Sbjct: 177  PQITPPPVMILKKKRSIGASPNPFSMHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAG 236

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKI 289
            + VQ+++ +  +ES  +++E  +  E  + +  +   +  K  D+ +E  +E K+   + 
Sbjct: 237  DDVQVESTEEEQESGAMEFEDGDFDEPMEAEEVDLEPMAAKAWDQESEPAEEVKQ---EA 293

Query: 290  STEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYIL 340
             + K  +    +   +VS  + +  EG S  + QE + +          D++    FY L
Sbjct: 294  DSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWL 352

Query: 341  DAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            DA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++
Sbjct: 353  DAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKID 403

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P   
Sbjct: 404  LNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKS 456

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S    
Sbjct: 457  EY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLL 513

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
             Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + +
Sbjct: 514  NQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMAAL 569

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              H   +D         KP   SHF VV K    IFP  F +    +N K         +
Sbjct: 570  VHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VAA 619

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MP
Sbjct: 620  TERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMP 677

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            KL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  + 
Sbjct: 678  KL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIP 730

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R
Sbjct: 731  MENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGR 790

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            ++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT 
Sbjct: 791  SERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDT- 833

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----- 933
             N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R     
Sbjct: 834  -NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEA 892

Query: 934  ---SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQ 984
               + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q
Sbjct: 893  QKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQ 952

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 953  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDS 1011

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1012 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSD 1071

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +
Sbjct: 1072 GNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLN 1131

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1132 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1186

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1187 -QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATW 1244

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +        
Sbjct: 1245 LGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT-------- 1294

Query: 1341 SSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             +I  +V +  S  + E + +R   + C   P            ++N++      F+  Y
Sbjct: 1295 ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIKKY 1347

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y G + C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ 
Sbjct: 1348 YDGWLTCEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYR 1402

Query: 1459 HLLDTQRGIEKM 1470
            ++ D +  +EK+
Sbjct: 1403 YIFDAECALEKL 1414


>gi|297709603|ref|XP_002831517.1| PREDICTED: DNA polymerase alpha catalytic subunit [Pongo abelii]
          Length = 1462

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1511 (35%), Positives = 817/1511 (54%), Gaps = 157/1511 (10%)

Query: 3    DEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEY 62
            D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E++Y
Sbjct: 12   DSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEEQY 66

Query: 63   DALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
              LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R  K
Sbjct: 67   SKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVK 124

Query: 122  RGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE 181
            +        V KPN   +   A  GK+      T+      SKD+ + +    ++    +
Sbjct: 125  K------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTEAPQ 172

Query: 182  FAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLINN 232
              P      +++RS+ ++   F SV++          S  S KE          ++   +
Sbjct: 173  ITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGD 231

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKIS 290
             VQ+++ +  +ES  +++E  +  E  + +  +   +  K  D+ +E  +E K    +  
Sbjct: 232  DVQVESIEEEQESGAMEFEDGDFDEPMEAEEVDLEPMAAKAWDQESEPAEEVKH---EAD 288

Query: 291  TEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILD 341
            + K  +    +   +VS  + +  EG S  + QE + +          D++    FY LD
Sbjct: 289  SGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLD 347

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            A+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++ 
Sbjct: 348  AYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MKIDL 398

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            +  +   +P++    ++DV      +IA +     +  +   PV++ YAF   ++P    
Sbjct: 399  NTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPEKSE 451

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S     
Sbjct: 452  Y-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQLLN 508

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
            Q +SWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ + + 
Sbjct: 509  QPISWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAVAALV 564

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
             H   +D         KP   SHF VV K    IFP  F +   ++N K         ++
Sbjct: 565  HHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYSFKEVIEEKNVKVE-----VAAT 614

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS MPK
Sbjct: 615  ERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMPK 672

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  +  
Sbjct: 673  L-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPM 725

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R+
Sbjct: 726  ENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRS 785

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            +R E+LLLHAF    YIVPDK  + K                  ++L +ED   D DTS 
Sbjct: 786  ERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDTSK 829

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------ 933
              ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R      
Sbjct: 830  --YKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVSSEAQ 887

Query: 934  --SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQ 985
              + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   I Q DI+Q+
Sbjct: 888  KVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQK 947

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSI
Sbjct: 948  ALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSI 1006

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDG 1104
            MI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG
Sbjct: 1007 MINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPMSDG 1066

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                  E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +G
Sbjct: 1067 NYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKMLIEIGENVLNG 1126

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
             V + ++ I K LTK P+ YPD K+ PHV VAL +   G       GDTV Y+IC     
Sbjct: 1127 SVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKGGDTVSYVIC----- 1180

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
              GS++  +QRA  P++L+K +    ID  YY +QQIHPVV+R+C  I+G     +A  L
Sbjct: 1181 QDGSNLTASQRAYAPEQLQKQNN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1239

Query: 1285 GLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
            GLDP++F+         + + +LL     + DEE+YR CE     CP+C +         
Sbjct: 1240 GLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--------E 1289

Query: 1342 SICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
            +I  +V +  S  + E + +R   + C   P            ++N++      F+  YY
Sbjct: 1290 NIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIKKYY 1342

Query: 1400 KGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCH 1459
             G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ +
Sbjct: 1343 DGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYRY 1397

Query: 1460 LLDTQRGIEKM 1470
            + D +  +EK+
Sbjct: 1398 IFDAECALEKL 1408


>gi|428168063|gb|EKX37013.1| DNA polymerase alpha subunit one [Guillardia theta CCMP2712]
          Length = 997

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/998 (43%), Positives = 611/998 (61%), Gaps = 72/998 (7%)

Query: 320  LNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGS------THHSCCVVV 373
            LN  + +FEV+DDG+L F+ +DA+E +S A  GT++LFGK+K  +      T  SCC+ V
Sbjct: 7    LNSGDVKFEVNDDGTLKFFWIDAYEDVSKA--GTVFLFGKIKIQNNDLDKPTFMSCCIHV 64

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            +N+QR V+ +P   L   D    +E+D +        F K  +D   G+K   A     L
Sbjct: 65   ENLQRQVFVLPREKLLDKDG-NAMEEDVDLMNHVFPEFAKFARDA--GIKKHKAK----L 117

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
               NY+       Y F    IP    Y LK  YP + P + +DL G +F  + GT  S L
Sbjct: 118  VKRNYM-------YHFQDPSIPKSSQY-LKFVYPAEFPAVASDLAGRSFKKVFGTTQSCL 169

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            EL L+KRK+ GP WL+I    + P    +SWCKYE  V   K I+ S+      E PP+ 
Sbjct: 170  ELLLLKRKLMGPCWLNIQ--GAEPVSTPLSWCKYEFRVADSKWIQKSTV---YMETPPLR 224

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            V +++++TV N R   NE+   S +C ++   D P    E K  G    FT +RKL+G  
Sbjct: 225  VMSVHMQTVKNLRDHSNEVAMLSALCHNEVNADGPTERPENKMYG----FTGIRKLEGAA 280

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
            +P+ F  +    N+           +ERALLN  + +L  +D DV++GHN  GFDLDVLL
Sbjct: 281  WPLDFKNKIDQFNATHKDAPRYIHENERALLNAFLAKLQLMDPDVIIGHNFIGFDLDVLL 340

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            HR Q  ++P   WSK+GRL+R+ MPKL+      G  ++    + ++GRL+CDT++ +++
Sbjct: 341  HRMQKLKIPG--WSKLGRLRRTNMPKLQNNAGGMGQ-STWAEKNVLSGRLICDTYIAAKE 397

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHL 793
             LRE +Y+L++LAKTQL K R ++    V   F     L++LI   E D++L + L F L
Sbjct: 398  NLRETTYTLSELAKTQLQKVRFDIDFQQVASYFGKSTDLLQLIACNENDSYLCLLLTFKL 457

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+QLTN++GNLW ++L  ARA+RVEYLLLH F+  K+++PDK T+       K++
Sbjct: 458  MILPLTKQLTNLAGNLWSRSLLSARAERVEYLLLHEFQKLKFVMPDKATF------NKKK 511

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKG--KRGPAYAGGLVLEPKKGLYDKYILLL 911
             N             +D+NFD++   + + K   ++  AY+GGLVL+PK+GLYDK+ILLL
Sbjct: 512  GN------------KDDSNFDDEAEDDANPKWSKRKKAAYSGGLVLDPKRGLYDKHILLL 559

Query: 912  DFNSLYPSIIQEYNICFTTV-------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            DFNSLYP+IIQE+NICFTTV       E +P   +P        GVLP ++K LV+RRR 
Sbjct: 560  DFNSLYPTIIQEFNICFTTVLPSSNTEEETPRYEMP--SKDLDEGVLPRVIKTLVERRRS 617

Query: 965  VKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            VK  +K  +   K QQLDI+Q ALK+ ANSMYGCLGF+ SRFYAKPLAELIT QGRE+L+
Sbjct: 618  VKEIIKKETDATKRQQLDIRQSALKIMANSMYGCLGFTYSRFYAKPLAELITAQGRELLQ 677

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
             TV++ QN LNLEV+YGDTDSI ++SG D   +A   A +  +E+NK ++ LE+ LDG+Y
Sbjct: 678  KTVEVTQNKLNLEVVYGDTDSIFVNSGCDTYEEAVKTANEARKELNKMWRLLEVGLDGIY 737

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
              +LLL KKKYAA+ V  +DG   +V E+KGLD+VRRDW +L+K  GD  L  ILS    
Sbjct: 738  CPLLLLNKKKYAALSVTERDGKITKVKEKKGLDIVRRDWCVLAKRAGDKILDFILSGNPV 797

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            EDVVE+IH  L ++  DM +  + L  YVITK LTK PE Y D K QPHVQVA+++K+ G
Sbjct: 798  EDVVENIHTYLRQLATDMENNSLPLSDYVITKGLTKEPEEYSDGKTQPHVQVAIKMKERG 857

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
                  AGD +PY+IC +   +       AQRA  P+ +++  GK  +D  +Y   Q+HP
Sbjct: 858  RPV--RAGDHIPYVICADPNITM-----FAQRAHDPELVEEAAGKLTLDKKWYLESQLHP 910

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
            VVSR+CA IEGT   R+A+CLGLD +KF    S + S+
Sbjct: 911  VVSRICAVIEGTDSGRIAECLGLDATKFHKNESRSQSN 948


>gi|299745348|ref|XP_001831651.2| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea
            okayama7#130]
 gi|298406546|gb|EAU90184.2| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea
            okayama7#130]
          Length = 1430

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1568 (34%), Positives = 799/1568 (50%), Gaps = 214/1568 (13%)

Query: 14   SRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLEN-PIYDTVAEDEYDALVARRREE 72
            SR  E  ++ EAL  LK  R GG+R        +K E+  IYD ++EDEY  +V  R + 
Sbjct: 2    SRSREKVSKLEALAELKRARAGGKRI-------LKEEDDQIYDEISEDEYRNIVKGRLQR 54

Query: 73   ARGFIVDDDGL-GYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV 131
                I D +G  GY D G E+DW       +SD++S  G+R        K  KK      
Sbjct: 55   DDFVIEDGEGSSGYVDNG-EDDW--LDTRDASDEDSDRGKR--------KTSKKNGKAKT 103

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF----APDEA 187
             KP       A       ++A     +         V++ +  +  +L +     AP  A
Sbjct: 104  MKPK-EKAKPAPPPVAPSINAYRPQVS---------VEQEQDFMAGLLGQLDKTPAPRVA 153

Query: 188  DRERRRRS---VSSNIKSF-VSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV-- 241
               R+R++    SS+I S  +  + + ++   ++        ++ +     ++ + DV  
Sbjct: 154  SAARKRKTSPQFSSDIDSSPIRSSHIPSDDYFMSPKKRPRVHDAGMTPTIERMADLDVHT 213

Query: 242  ----VEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLL 297
                 E S E+ ++     +L   D  V+  ++  +E+    K  +      ST K    
Sbjct: 214  SSDGAESSNEVNYDDFFDDDLMMVDEEVKPVKQEPEELQLPKKTARAPAPVASTSKQEEP 273

Query: 298  SATAGWKEV------SGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM 351
                 W  V      S  N  L   +       S   ++ DGSL F+ +D  E     + 
Sbjct: 274  DVKPAWLSVYDTLAVSKDNETLGSAERPAIKGTSIGALEPDGSLRFFWIDYLE-----HE 328

Query: 352  GTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP----------NGPLFQTDEIMKLEK 399
            G LYL GK+K     T  SCCV +  ++R +YA+P           G + +TDEI   E 
Sbjct: 329  GRLYLVGKLKDKKSDTWVSCCVTIDGLERNLYALPREKRIDFDEDTGEVTETDEIPTDED 388

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
              ++       F +  Q               N+ + +Y    VKR YAFG+ ++P GE+
Sbjct: 389  VLDD-------FEQLRQ---------------NMKIKSYKTRFVKRNYAFGEKDVPRGES 426

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
              LKI YPF  P +P  +   N   + GT++SA E+F++KRK+ GP WL I   +     
Sbjct: 427  RWLKIVYPFTQPQIPMGVWSPNISHIFGTNTSAFEIFVLKRKIMGPCWLEIK--NPVVEF 484

Query: 520  QRVSWCKYEITVDSPKDIR-VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
            + VSWC++E +V  PKD+  +S S     EVPP TV +++++TV N  ++  E+V AS  
Sbjct: 485  KGVSWCRFEASVADPKDVSPMSESLDQAKEVPPFTVMSLSVRTVVNHHENKREVVCASTR 544

Query: 579  CCHKAKID--TPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
              H   ID  TP        P  L  S  T +R LD   FP  F  E      K    +L
Sbjct: 545  TWHNISIDDGTP--------PEQLPCSVQTFIRALDR--FPPNFESET---KKKTRGQIL 591

Query: 635  CCESSE--------RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
              ++          R + +  +  + K D D+++GH   G  LDVLLHR +  +V    W
Sbjct: 592  PTQNERMLLSLLLVRLIADDCVAAINKSDPDIIIGHEFLGVSLDVLLHRMKDLKV--DHW 649

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLTQL 745
            S++GR +RS+ P + K  T          +  + GRL CD     ++ ++   ++SLT++
Sbjct: 650  SRLGRFRRSKWPNIGKQGTN---------VRFLNGRLTCDLASDAAKSMISSTTWSLTEM 700

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
              T L  +R+++ P D         S    +M  +++ E DA   M +   + +LPLTRQ
Sbjct: 701  CSTHLGLERQDIDPDDTANYLDGSLSGPGKMMTFVQHCEMDAHYQMAIATKVQILPLTRQ 760

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            LTN++GN W KTL G RA+R EY+LLH F   KYI PDK TY K+T              
Sbjct: 761  LTNLAGNAWNKTLNGGRAERNEYILLHEFHRLKYICPDK-TYGKKT-------------- 805

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                +  E A+ + D   +  ++ K    Y GGLV EPK+GL+D YIL++DFNSLYPSII
Sbjct: 806  ----VPKETADEEGDAPKSKAKRDK----YKGGLVFEPKRGLWDSYILVMDFNSLYPSII 857

Query: 922  QEYNICFTTVE-----RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASG 974
            QEYNI FTTV+      + +  +P  PS K  GVLP L+  LV RRR VK+ MK  TA+ 
Sbjct: 858  QEYNIDFTTVDPPEVDENGEEKIPDPPSDKDKGVLPRLIATLVNRRRQVKSLMKDRTATP 917

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
             K+ Q DI+QQALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  T +L ++ LN
Sbjct: 918  AKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTRTRELAES-LN 976

Query: 1035 LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKY 1094
            L+VIYGDTDS+ ++SG++D A+A   +    + VN +Y  LEIDLD +++R+LLL+KKKY
Sbjct: 977  LDVIYGDTDSVFVNSGVNDFAEALKTSAIFKKAVNDQYNLLEIDLDCVFQRLLLLQKKKY 1036

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            AA+KV+  DG    V E KGLDM RR++  LSKEV  + L++ILS  S EDVVE+IH  L
Sbjct: 1037 AALKVE--DGSRTSV-EVKGLDMKRREYCALSKEVSQYVLARILSGDSTEDVVETIHEYL 1093

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
              + +++RSGQV LE +++ K L K PE YPDAK+QPHVQVALR+K  G S    +GD +
Sbjct: 1094 GTMSQNVRSGQVKLEDFIVFKRLGKNPEDYPDAKSQPHVQVALRMKAKGQS--ARSGDVI 1151

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            PYI C  +G  S  +   A RARHPDE+++G G   ID ++Y + Q+ P + RLC +IEG
Sbjct: 1152 PYIFCLGEGEESARTTQ-ADRARHPDEVRRGAGVVKIDYEWYLAHQVLPPIERLCDAIEG 1210

Query: 1275 TSPERLADCLGLDPSKFQSKPSETMSSDPS--SSLLFAVGDEERYRGCEPLILSCPSCSS 1332
            T   RLA+CLGLDP+++++    T +SD     SL     D ER++  +P  + C SC  
Sbjct: 1211 TDRARLAECLGLDPNRYRT----TTASDEKFFMSLDSQTSDAERFKDADPFEVRCKSCQG 1266

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
                P +       V                + C  C + +    +       Q++ Q  
Sbjct: 1267 KTKFPLLHDRTIPLVRAS------------GVTCLSCDKPIAGVNLQL-----QLEVQIR 1309

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
              +S YY+G  +CD++TCK  T ++ +        G  C   P C GR+  +Y++  LY 
Sbjct: 1310 AHISKYYEGWTVCDEQTCKNRTRAMGV-------YGKRCLK-PGCRGRVSFEYSDTKLYN 1361

Query: 1453 QLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAAS-------TVQRIRERCAY 1505
            QL Y+ +L D ++ ++    +     E+E   +  VV   A+        V++   +C  
Sbjct: 1362 QLRYYKYLFDREKALKAARGTGS---EEE---VLAVVGSQATLLNNLSDVVEKYLNQCGR 1415

Query: 1506 GWVKLNDI 1513
             WV LN I
Sbjct: 1416 RWVDLNSI 1423


>gi|260796197|ref|XP_002593091.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae]
 gi|229278315|gb|EEN49102.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae]
          Length = 1526

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1240 (40%), Positives = 707/1240 (57%), Gaps = 120/1240 (9%)

Query: 266  EVKEKVKDEVNEDVKECKKLNAKISTEKDPL---LSATAGWKEVSGGNMVLDEGKSGLNC 322
            +VK++ +D+V   VK   +   KI  EK P    + + +GW+ + G     +   + +  
Sbjct: 321  KVKQEPEDQVQ--VKSEPEELRKIKQEKKPFEDQVISGSGWETIKGEMGSAESVVTDVKV 378

Query: 323  QESEFEV----DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNM 376
              S   +    + +  L FY +DA+E       G +Y+FGKV  ++   H SCCVVV+N+
Sbjct: 379  DSSSLPLVTNQEGESVLRFYWIDAYED-QYKQPGVVYMFGKVWIESARAHVSCCVVVRNI 437

Query: 377  QRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS 436
            +R ++ +P           +L K+ +++ + P+      Q+     K    ++++  N  
Sbjct: 438  ERSIFLLPRE--------TRLFKNGDDTGV-PVTIMDVYQE--FDEKISSKHKIMKFNSR 486

Query: 437  NYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELF 496
                  V ++YAF + E+P   +Y L++ Y    P LPADLKGE F  + GT++S+ ELF
Sbjct: 487  K-----VTKQYAFEKLEVPVESDY-LEVRYSSDLPALPADLKGETFSHVFGTNTSSTELF 540

Query: 497  LVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTA 556
            L++R++KGP WL I K    P  Q +SWCK E  V     + V++ +      PP+ V +
Sbjct: 541  LLERRIKGPCWLDI-KLPQKPN-QPISWCKVEAFVTKAAHVSVTAET---LTPPPMVVMS 595

Query: 557  INLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
            ++L+T+ N +   NE+V+ + +   +  ID         KP    +F  + K +  +FP 
Sbjct: 596  LSLQTLLNPKTHQNEVVAVAALVHTRFHIDKAP-----PKPPFQDNFCAISKPNDCVFPY 650

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
             F K+A  +N   G+ V    S+ERALL   + +++KLD D+++GH+I GFDLDVLLHR 
Sbjct: 651  DF-KDAIRKN---GARVEVM-STERALLGYFLAKVHKLDPDIIIGHDIYGFDLDVLLHRI 705

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR 736
              C++P   WS+IGRLKR   PKL  G    G  +S    S   GRL+CD  + S++L+R
Sbjct: 706  NSCKIPH--WSRIGRLKRQVFPKLSSG----GGRSSFVEKSAACGRLICDVKISSKELIR 759

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
              SY LT+L K  L++DR+ V   +V  MF T + L+ LIE    DA L++ +M  L+VL
Sbjct: 760  LKSYDLTELTKQILHQDRQVVPQEEVKNMFNTSQKLLYLIETTWVDASLTLNIMCELNVL 819

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PL  Q+TNI GNL G+TL G R++R EYLLLHAF+ K +IVPDK TY K     KQ + H
Sbjct: 820  PLALQITNICGNLLGRTLMGGRSERNEYLLLHAFQEKGFIVPDK-TYGK-----KQAATH 873

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
             V+    ++   +  +          +KG+R PAYAGGLVLEPKKG YDKYILLLDFNSL
Sbjct: 874  PVDVDADDDDQAKPTS----------KKGRRKPAYAGGLVLEPKKGFYDKYILLLDFNSL 923

Query: 917  YPSIIQEYNICFTTVER---------SPDGLVPHLPSSK-TTGVLPELLKNLVQRRRMVK 966
            YPSIIQEYNICFTT+ R         + +  +P LP +    GVLP  ++ LV+RRR VK
Sbjct: 924  YPSIIQEYNICFTTISREVPQSQGGDAEEEQLPDLPDADLEPGVLPTEIRKLVERRRQVK 983

Query: 967  TWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
              MK       LK+ Q +I+QQALKLTANSMYGCLGF+ SRFYAKPLA L+T +GREIL 
Sbjct: 984  QLMKQPDLNPDLKL-QYNIRQQALKLTANSMYGCLGFTYSRFYAKPLAALVTSKGREILL 1042

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
             T DLVQ  +NL+VIYGDTDSIMI++   +      +  KV  EVNK Y+ LE+D+DG++
Sbjct: 1043 KTKDLVQ-KMNLDVIYGDTDSIMINTNSTNWDDVFKLGNKVKSEVNKLYRLLELDIDGVF 1101

Query: 1084 KRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVG-------DFCLS 1135
            K MLLLKKKKYAA+ + +  DG      E KGLD+VRRDW  L+KE G        + + 
Sbjct: 1102 KSMLLLKKKKYAALTISKNPDGSFSTGQELKGLDIVRRDWCNLAKEAGKTVAHFSSYVIG 1161

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            QILS++  + +VE+IH  L +V E ++SG + ++ Y I K LTK P+ YPD K  PHVQV
Sbjct: 1162 QILSDQPRDKIVENIHEKLTEVGEKVKSGDIPVQMYEINKALTKNPQDYPDKKTLPHVQV 1221

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A+ +          AGDT+ YIIC       GS +   QRA   D L K D    ID  Y
Sbjct: 1222 AMWMNSHSEGKKVGAGDTISYIIC-----EDGSRLPATQRAYAADRLAK-DENLKIDTQY 1275

Query: 1256 YASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL---FAVG 1312
            Y SQQ+HPVVSRLC  I+GT    +A+CLGLDPS ++   ++    D S +LL    A+ 
Sbjct: 1276 YLSQQVHPVVSRLCDPIDGTDAGIIAECLGLDPSGYRK--AQQYHDDESEALLGGNAAMT 1333

Query: 1313 DEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEE 1372
            DEE+++  E    +CP      +C        + V+  P  PE   +     +C   P +
Sbjct: 1334 DEEKFKDAERFKFNCPKP----ECGKENIWDGVFVANSPV-PEFTLSQCANSQCDLAPTQ 1388

Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAER-GTVC 1431
                     M+ N++       V MYY+G M CDD +C     S   R+  + +R G VC
Sbjct: 1389 YLT------MLKNKLTLATRRHVKMYYEGWMKCDDPSC----ASRTRRVPMNPQRNGAVC 1438

Query: 1432 PNYPRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
            P    CN G L ++YT++ LY QL ++ H+ D  + I+K+
Sbjct: 1439 PT---CNKGILQQEYTDSQLYTQLLFYQHIFDLDKAIDKL 1475



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 3/44 (6%)

Query: 48 KLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          +LEN +Y+ V EDEY  +V  R+E+   +I+DDDG GY ++G+E
Sbjct: 50 ELEN-VYEEVNEDEYSDVVRTRQED--DWIIDDDGSGYVEDGRE 90


>gi|405964566|gb|EKC30035.1| DNA polymerase alpha catalytic subunit [Crassostrea gigas]
          Length = 1492

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1227 (40%), Positives = 690/1227 (56%), Gaps = 116/1227 (9%)

Query: 272  KDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDD 331
            K+E NE + + KK   +IS    P  + + GW++    +      +  ++  E       
Sbjct: 303  KEETNEKLVKPKK---EISI---PFETLSTGWEKYQNDSQEESVAEVKVDTSELPLVTSS 356

Query: 332  DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            +G   L FY LDA+E    ++ GT+YLFGKV  +    + SCCV VKN++R +Y +P   
Sbjct: 357  NGEQVLRFYWLDAYED-PYSSPGTVYLFGKVWIEKAKVYVSCCVTVKNIERRIYVLPRS- 414

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
               T + +K   D              + DV      +IA +     +  +    V ++Y
Sbjct: 415  ---TRKNLKSGSDT--------GIDVSMVDVYSEFNEKIAEKF---KIPKFKSKKVTKQY 460

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF + ++P   +Y L+I +  + PPLP DL+GE F  + GTH+S LEL L+  K+KGP W
Sbjct: 461  AFEKVDVPVESDY-LEIRFGAEIPPLPRDLEGETFNHVFGTHTSCLELLLIDSKMKGPGW 519

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I K      PQ VSWCK E+++  P+ + V +  +     PP+ V  +NL+T+ N + 
Sbjct: 520  LDI-KLPQIVNPQ-VSWCKIEVSISKPELLSVVNDQQLTP--PPLVVMTLNLRTLPNHKN 575

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+A+ +      ID P   + +++     HF V+ K    +FP  F ++      
Sbjct: 576  HQNEIVAATCLVQESFSIDKPAPKNPFQQ-----HFCVLTKPSDSLFPFDFREKLQKEGK 630

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K    +L    +ERAL+  L+ +++KLD DV+VGH+I GFDLD++LHR    +VP   WS
Sbjct: 631  KLRVEML---PNERALMGFLLAKIHKLDPDVIVGHDIFGFDLDLILHRINANKVPH--WS 685

Query: 688  KIGRLKRSEMPKLR-KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            KIGRLKR++MPKL   G   F    +    +C  GRL+CD  L +++L+R  SY LT+LA
Sbjct: 686  KIGRLKRTKMPKLSGPGHRGFADKTA----AC--GRLVCDIKLSAKELIRSRSYDLTELA 739

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
               L   R E+    +  M+ + + L++L+E    D+   + +++ L+VLPL  Q+T+I 
Sbjct: 740  NVILKSKRLELDYDQIRNMYMSSQQLLQLLELTLMDSTYILRILYELNVLPLALQITSIC 799

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN+  +TL G R++R EYLLLHAF  K +IVPDK       +  K      ++D   E  
Sbjct: 800  GNVMTRTLLGGRSERNEYLLLHAFTEKNFIVPDK-------EYKKTVVKEAIDDDEAE-- 850

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                     D        G+R PAYAGGLVL+PKKG YDKYILLLDFNSLYPSIIQEYNI
Sbjct: 851  ---------DGGKGGKSSGRRKPAYAGGLVLDPKKGFYDKYILLLDFNSLYPSIIQEYNI 901

Query: 927  CFTTVERSP--------DGLVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMK-TASGLK 976
            CFTTV R+         +  +  LP      G+LP  ++ LV+ RR VK  MK   S  +
Sbjct: 902  CFTTVSRNAVQQSDKDDEEAIIELPDKDLEPGILPTEIRKLVESRRQVKQLMKGDISNEQ 961

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
              Q DI+Q+ALKLTANSMYGCLGFS+SRF+AKPLA LIT +GREIL  T DLVQ+ +NL+
Sbjct: 962  YMQYDIRQKALKLTANSMYGCLGFSHSRFFAKPLAALITAKGREILMKTKDLVQS-MNLD 1020

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA 1096
            VIYGDTDSIMI++  +DI     +  KV  EVNK YK LEID+DG++K MLLLKKKKYAA
Sbjct: 1021 VIYGDTDSIMINTNCNDIDAVYKVGNKVKSEVNKLYKLLEIDIDGVFKSMLLLKKKKYAA 1080

Query: 1097 VKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            + V +  DG   E  E KGLD+VRRDWS L+KE G+F + QILS  + E +VE+IH+ LM
Sbjct: 1081 LSVSKGPDGKYVEHKELKGLDIVRRDWSDLAKEAGNFVVEQILSGETRETIVENIHSKLM 1140

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            +V E +R+G + +E Y ITK LTK PE YPD K+ PHVQVALR+   G      AGDTVP
Sbjct: 1141 EVGEKVRNGDIPIELYYITKQLTKNPEDYPDKKSLPHVQVALRVNSKG-GKKMKAGDTVP 1199

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            YIIC +     GS++  +QRA HP+EL K +    +D  YY SQQ+HPVVSRLC  IEGT
Sbjct: 1200 YIICAD-----GSTLAASQRAYHPEELAKSN-TLTVDTKYYLSQQVHPVVSRLCDPIEGT 1253

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLF---AVGDEERYRGCEPLILSCPSCSS 1332
                LA+CLGLDPS ++     T   D     L     + DEE+YR CE     CP    
Sbjct: 1254 DAAHLAECLGLDPSGYK----HTARYDEEDEALLNGTEISDEEKYRDCERFKFVCP---- 1305

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
                P     I +  +   ++  TE +      CP           +P  I N+++    
Sbjct: 1306 ---IPVCGREIIVDAAFTGAEEFTECSIG---VCPNNQCNTPLNEHAP-YICNRLRMDIR 1358

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN----GRLVRKYTEA 1448
              V  YY+G + C+D  C   T  + L      +RG     +P C+    G L   YT+ 
Sbjct: 1359 RHVQKYYQGWLKCEDAACGTVTRRVPLTF----QRG-----HPVCHACHRGLLHPLYTDT 1409

Query: 1449 DLYKQLTYFCHLLDTQRGIEKMEISAK 1475
             LY QL ++ H+ D  + ++ M   +K
Sbjct: 1410 MLYTQLCFYEHIFDADKALKCMTDGSK 1436


>gi|343425417|emb|CBQ68952.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1671

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1228 (39%), Positives = 674/1228 (54%), Gaps = 156/1228 (12%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGP 387
            +DD SL FY LD    L G N G +YL GKVK   +  + SCC+ V  ++RC++ +P   
Sbjct: 465  EDDKSLFFYWLD---YLEGEN-GVVYLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRS- 519

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN----VSNYIVSPV 443
                    K  +D  E+            D A+G + EI ++   L     +  ++   V
Sbjct: 520  --------KQLEDGHET------------DRAVG-EDEIYDEFEELTAKHGIKRFLSKWV 558

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF  A +PA  +Y +KI Y F +P LP D KG  F    GT++S  EL +VKR++ 
Sbjct: 559  TRKYAFEHAGVPAESSY-MKIRYGFDEPQLPFDFKGRTFSKAFGTNTSPFELLVVKRRIF 617

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKT 561
            GPSWL IS  S       +SWCK E+T+D PKDI   S +   +  E PP+TV +I ++T
Sbjct: 618  GPSWLKISNASLAEGSTPISWCKMEVTIDDPKDISPVSDADTTSPRETPPLTVMSIAMRT 677

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
            V N +++  E+V+ S       +I+ P        P  L  S FT VR L G +FP GF 
Sbjct: 678  VVNHKENKQELVAVSARTWSDHQIEDPT------PPEQLPCSVFTAVRPL-GNMFPPGFE 730

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA  R SK   + L     ER LLN L+ +++  D DV+VGH  +G  LDVLLHR +  
Sbjct: 731  TEA--RKSKIKIHTL---KYERMLLNALLAQIHNADPDVIVGHEFNGVSLDVLLHRMKDL 785

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLR 736
            R  +  WS++GR +R + PKL++G            +  +AGRL+CD  L S   + ++ 
Sbjct: 786  R--ADHWSRVGRFRRPKWPKLKQGMN----------LKILAGRLVCD--LASDNGKSMIT 831

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL----ESLMELIEYGETDAWLSMELMFH 792
              ++SLT++  T L   R+++ P +    F +L    E LM  + + E D +  M +   
Sbjct: 832  STTWSLTEMCGTHLKIQREDIDPEETASFFDSLAPSPERLMTFVRHCEVDTFFQMAIAAK 891

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV--KETKMA 850
            + +LPLT+QLTN++GN W KTL G RA+R EY+LLH F  +KYI PDK +    K+ + A
Sbjct: 892  VQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFHRQKYICPDKISAWEKKQIQQA 951

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             +                  A+    +S  D         + GGLV EPK+GL+DKYIL+
Sbjct: 952  AELKAKARAKSGAGGAGGAAASGTAVSSKKDK--------FKGGLVFEPKRGLWDKYILV 1003

Query: 911  LDFNSLYPSIIQEYNICFTTVERSP-DGL------------------------------- 938
            +DFNSLYPSIIQE+NI FTTVER P  GL                               
Sbjct: 1004 MDFNSLYPSIIQEFNIDFTTVERPPTQGLEDAEVAAPAAAATAASTSGEGETAVDAVADV 1063

Query: 939  --VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANS 993
              +P +PSS    GVLP ++  LV RRR VK+ MK  TA+  ++ Q +I+Q ALKLTANS
Sbjct: 1064 DKIPDIPSSDVEQGVLPRIIAQLVARRRQVKSLMKDKTATPSQLMQWNIKQLALKLTANS 1123

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLGF NSRFYA+PLA L T +GREIL +T DL ++ L L+VIYGDTDS+MI++   +
Sbjct: 1124 MYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESML-LDVIYGDTDSVMINTNATE 1182

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
              +A  I  +  + VN++Y+ LEID+DG+++RMLLL+KKKYAAV V  +DG      E K
Sbjct: 1183 YREALRIGQEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVLVD-EDGK--RSTEIK 1239

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GLDM RR++S LSK V ++ L QILS ++ E VVE IH  L  +   +++GQVAL+ ++I
Sbjct: 1240 GLDMKRREYSALSKNVSNYVLDQILSGQATELVVEHIHEYLSDMSGKIKTGQVALDDFII 1299

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
             K L K PE YPD K+QPHVQVALR+K  G S     GD +PYI C  +  +S +    A
Sbjct: 1300 FKRLGKNPEDYPDVKSQPHVQVALRMKARGGS--ARMGDVIPYIFCLGEDGTSSTKTAQA 1357

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF-Q 1292
            +RA HPDEL++ D +  ID ++Y + QI P V RLC SIEGT   RLA+CLGLDP+K+  
Sbjct: 1358 ERAHHPDELRRKDSELKIDYEHYLALQILPPVERLCESIEGTDRSRLAECLGLDPAKYSH 1417

Query: 1293 SKPSETMSSDPSSSLLFA-----VGDEERYRGCEPLILSCPSC--SSTFDCPA---VCSS 1342
            +  S   +    +   FA     + DE R+  CEPL L+CP+C   S F  PA     ++
Sbjct: 1418 ASTSGAGAGGAGADREFATLDSQIPDEVRFAQCEPLKLTCPTCREHSAFLGPAHRPRIAA 1477

Query: 1343 ICMSVSEKPSKPETEYNFWRT--LRC--PKCPEEVEAGRISP-GMIANQVKRQADGFVSM 1397
            I   +++  + P  E N   T  +RC  P C       R+ P   +A Q++     +V  
Sbjct: 1478 IKQPLADSTNTPPEERNAISTKGIRCTNPAC------QRMLPLATVAIQLELAVRTYVER 1531

Query: 1398 YYKGLMMCDDETCKYTTCSLNLR-----LIGDAERGTV------CPNYPRCNGRLVRKYT 1446
            YY G   C D  C   T   ++       + DA+   +        ++  C GR+   Y 
Sbjct: 1532 YYAGWTECSDPNCGSRTRMASVYAKRCLAVHDAKSAALLDATAQVGSHLACRGRVEPSYR 1591

Query: 1447 EADLYKQLTYFCHLLDTQRGIEKMEISA 1474
            +  LY QL Y   L D  R  +K+  +A
Sbjct: 1592 DKQLYDQLIYLESLFDVGRIRDKVAATA 1619


>gi|392565173|gb|EIW58350.1| hypothetical protein TRAVEDRAFT_58647 [Trametes versicolor FP-101664
            SS1]
          Length = 1457

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1328 (37%), Positives = 711/1328 (53%), Gaps = 191/1328 (14%)

Query: 251  ESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGN 310
            ++D S +    D F+E+ E   DE+ ED+K   +   ++  E  PL          +GG 
Sbjct: 246  DADASFDDIDMDAFMEIDE---DEL-EDLKPKPRAKIEVDAEAKPLKPLNTN----AGGK 297

Query: 311  MVLDEGKSGLNCQES-EFEVDD-----------------------DGSLPFYILDAHEQL 346
              LD+  S L+  +S +   DD                       DGSL FY LD  E  
Sbjct: 298  KKLDDTPSWLSIYDSLKVTTDDSLGSGPTTPARTAAPTNLSVLEEDGSLRFYWLDYLE-- 355

Query: 347  SGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP----------NGPLFQTDEI 394
               + G LY  GK   K   T  S  V V+N+QR ++ +P           G +++TD++
Sbjct: 356  ---HDGKLYFIGKTQDKKTKTWVSISVTVENLQRNLFVLPRERRMEEDEDTGEMYETDQV 412

Query: 395  MKLEK-----DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF 449
             +L +     D    +    AF+ K                            VKR+YAF
Sbjct: 413  PELPEIYSDFDRLRRKAGIKAFKGKF---------------------------VKRKYAF 445

Query: 450  GQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLS 509
            G+ ++P  E   LK+ Y F +P LP      NF  + GT++SA EL ++KRK+ GP WL 
Sbjct: 446  GEKDVPREEKQWLKVVYGFNEPQLPNTASSPNFSRIFGTNTSAFELLVLKRKIMGPCWLQ 505

Query: 510  ISKFSSCPAPQ----RVSWCKYEITVDSPKDIRV--SSSSKHVAEVPPVTVTAINLKTVF 563
            +        P+     VSWCK E TV  PKDI     + S    E+PP+TV +++++T+ 
Sbjct: 506  VKH------PEIDNKGVSWCKVEATVSDPKDINPFPETDSDAPREMPPLTVVSLSMRTIV 559

Query: 564  NKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
            N R+++ EIV A+        ID  TP        P  L  +  T VR LD   FP  F 
Sbjct: 560  NHRENIREIVCATARLWTNLDIDGTTP--------PESLPCTVRTFVRPLDR--FPPNFE 609

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                 R    G  V+    +ER LLN L++ L+K D DV+VGH   G  LDVLLHR +  
Sbjct: 610  A----RAGHNGKGVISAMKNERMLLNNLLVTLHKADPDVIVGHEFLGDSLDVLLHRMREL 665

Query: 680  RVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLL 735
            +  +  WS+IGR +RS+ P + R+G            M  ++GRLLCD  L S   + ++
Sbjct: 666  K--ADHWSRIGRFRRSKWPNIGRQGTN----------MRFLSGRLLCD--LASDGAKGMI 711

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDAWLSMELMF 791
               ++SLT++ KT L  +R+E+ P D    F     T + L+  + + E DA   M L  
Sbjct: 712  TSTTWSLTEMCKTHLKSERQEIDPDDTASYFDGSVSTPDRLLTFVRHCELDAHYQMALAA 771

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KY+ PDK  Y K+   A 
Sbjct: 772  KVQLLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYLCPDKL-YGKKAATAV 830

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            +            E  +EDA    + +     KGKR   Y GGLV EPK+GL+DKYIL++
Sbjct: 831  K-----------AEKEDEDA----EGAGTKATKGKRD-KYKGGLVFEPKRGLWDKYILVM 874

Query: 912  DFNSLYPSIIQEYNICFTTVE--RSPDG--LVPHLPSSKTT-GVLPELLKNLVQRRRMVK 966
            DFNSLYPSIIQEYNI FTTVE     DG   +P  PSS+   GVLP L+  LV RRR VK
Sbjct: 875  DFNSLYPSIIQEYNIDFTTVEAVEDEDGEEKIPEPPSSEVALGVLPRLIATLVNRRRQVK 934

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            + MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  
Sbjct: 935  SLMKDKKATAGQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTH 994

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L ++ + L+V+YGDTDS+ ++S + D+A+A  I+ +  + VN +YK LEIDLDG+++
Sbjct: 995  TRELAES-MQLDVVYGDTDSVFVNSNVTDLAEALKISAEFKKAVNDRYKLLEIDLDGIFQ 1053

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LLL+KKKYAAVKV+  DG      E KGLDM RR++  LSK V  F L QILS  + E
Sbjct: 1054 RLLLLQKKKYAAVKVE--DGT-RTSTEVKGLDMKRREYCALSKTVSQFVLEQILSGEATE 1110

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
            +VVE+IH  L  V E++R+G++ L+++++ K L K PE YPDAK+QPHVQVALR+K  G 
Sbjct: 1111 NVVENIHEYLSTVSENVRAGKIKLDEFIVFKRLGKNPEDYPDAKSQPHVQVALRMKARGI 1170

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            +    AGD +PY+ C  +G  S S    A +A+HPDE+++   K  ID ++Y SQQI P 
Sbjct: 1171 T--ARAGDVIPYVFCLGEGGES-SKTAQADKAKHPDEVRRESDKLKIDYEHYLSQQILPP 1227

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLI 1324
            + RLC  IEGT   RLA+CLGLDP+++++            +L   + D ER++  +P +
Sbjct: 1228 IERLCEPIEGTDKSRLAECLGLDPNRYRTSAGGDAEERYFGTLDSLMSDAERFQDTDPFV 1287

Query: 1325 LSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            + C SC+       V  +      + P K          + C +C      G +S   + 
Sbjct: 1288 VRCRSCNGD-----VTFAPFADREKSPIKSA-------GVMCTQC-----RGELSVASVQ 1330

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRK 1444
             Q++ Q    ++ YY+   +CDD TC   T     R++G   R  + P    C G +  +
Sbjct: 1331 TQLEVQIRTHIARYYESWTVCDDPTCGNRT-----RMMGVYGRRCLRPG---CRGAVSFE 1382

Query: 1445 YTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRP-VVALAASTVQRIRERC 1503
            Y++A LY QL Y+  L D +R  +     A I   K +  +R   + +   TV +  ++C
Sbjct: 1383 YSDAQLYNQLRYYFSLFDAERA-KNSASPATIADIKVVEGLRSEFLDMMKGTVDKYMDQC 1441

Query: 1504 AYGWVKLN 1511
               W++++
Sbjct: 1442 GRRWIQMS 1449



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 18 EASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFI 77
          E  A+   L  LK  R GG RS     Y ++ ++ +YD V ED+Y ++V R R     F+
Sbjct: 8  EKQAKLSKLAELKRAREGGGRS-----YKVEEDDRLYDEVTEDQYKSVV-RGRLAQDDFV 61

Query: 78 VDDDGLGYGDEGQEE 92
          VDD   GY D G ++
Sbjct: 62 VDDGVGGYMDTGVDD 76


>gi|449548212|gb|EMD39179.1| hypothetical protein CERSUDRAFT_112852 [Ceriporiopsis subvermispora
            B]
          Length = 1462

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1286 (38%), Positives = 704/1286 (54%), Gaps = 145/1286 (11%)

Query: 267  VKEKVKDEVNEDVKECKKL-NAKISTEKDPLLSATAGWKEV-------SGGNMVLDEGKS 318
             K  VK E++ D K  + + N +   +K      T  W  V       +   +   EG S
Sbjct: 277  AKATVKMEIDADAKPLRPIDNIRAQDKKVKKQDETPSWLSVYDSLNVNTADTIGPLEGTS 336

Query: 319  GLNCQESEFEV-DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKN 375
              +    ++ V + DGSL F+ LD  E     + G LY  GK +  +T    SCCV V+N
Sbjct: 337  AESSSTKKYSVLEQDGSLRFFWLDYLE-----HDGRLYFTGKAQDKTTKAWLSCCVTVEN 391

Query: 376  MQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL-- 433
            +QR ++ +P     + DE   +  +  E+ + P               T+I N    +  
Sbjct: 392  LQRNLFVLPRERRIEEDE---MTGEVYETDVVPEL-------------TDIYNDFDRIRK 435

Query: 434  --NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSS 491
              N+  +    VKR+YAFG+ ++P GE+  LK+ Y F +P LP +L   N   + GT++S
Sbjct: 436  KANIKKWKAKFVKRKYAFGEKDVPKGESQWLKVVYGFDEPQLPNNLSSPNIARVFGTNTS 495

Query: 492  ALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE--V 549
            A EL ++KRK+ GP WL I K       + VSWCK E  V  PKDI   S S   A   +
Sbjct: 496  AFELLVLKRKIMGPCWLQIKK--PVLDTKGVSWCKVEAVVSDPKDINPFSDSDPQAPKGL 553

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            PP+TV +++++T+ N + ++ EIV A+        I+ P  A    +P  +  F  VR L
Sbjct: 554  PPLTVMSLSIRTIVNHKANIREIVCATSRTWSDIDIEDP--APPETQPCTVRTF--VRPL 609

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
            D   FP  F   A   N K   N++   ++E ALLN L+I +Y+ D DV+VGH   G  L
Sbjct: 610  DR--FPPNFEARANG-NGKGAINLM---ANEYALLNNLLITIYRADPDVIVGHEFLGVSL 663

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
            DV+LHR +  +V  + WS++GR +RS+ P         G G     +  + GRLLCD   
Sbjct: 664  DVVLHRLRDLKV--NHWSRVGRFRRSKWP---------GIGRQGTNLRFLNGRLLCDLAS 712

Query: 730  CS-RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAW 784
             S + ++   ++SL+++ KT L  DR+++ P D    F +  S    L+  + + E DA 
Sbjct: 713  DSAKGMISSTTWSLSEMCKTHLKSDRQDIDPDDTASYFDSSVSSPDRLLTFVRHCELDAH 772

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
              M L   + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK  Y 
Sbjct: 773  YQMALAAKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDKL-YG 831

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            K+   A++                 DA  D D       K KR   Y GGLV EPK+GL+
Sbjct: 832  KKAATAEK----------------ADAQ-DEDGDGKKTSKSKRD-KYKGGLVFEPKRGLW 873

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP---DG--LVPHLPSSKTT-GVLPELLKNL 958
            DK+IL++DFNSLYPSIIQEYNI FTTV+++    DG   +P  PSS+   GVLP L+  L
Sbjct: 874  DKFILVMDFNSLYPSIIQEYNIDFTTVDKAEEDDDGEEKIPEPPSSEVAQGVLPRLIATL 933

Query: 959  VQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            V RRR VK  MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T 
Sbjct: 934  VSRRRQVKALMKDKKATQAQLMQWDIKQIALKLTANSMYGCLGFEYSRFYARPLAALTTF 993

Query: 1017 QGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLE 1076
            +GREIL  T +L ++ L L+V+YGDTDS+ ++S + D+A+A  I+  + + VN +YK LE
Sbjct: 994  KGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTDLAEALKISSDLKKAVNDRYKLLE 1052

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            IDLDG+++R+LLL+KKKYAAVKV+ +DG      E KGLDM RR++  LSK    + L Q
Sbjct: 1053 IDLDGIFQRLLLLQKKKYAAVKVE-QDGK--TSTEVKGLDMKRREYCALSKAASQYILEQ 1109

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            ILS  + E VVE IH  LM + ED+R+G++ L++++I K L K PE YPDAKNQPHVQVA
Sbjct: 1110 ILSGEATETVVERIHEYLMTLGEDVRAGKIKLDEFIIFKRLGKNPEDYPDAKNQPHVQVA 1169

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICC-EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            LR+K  G S    +GD VPYI C  E G +S S+   A +A+HPDE+++   +  ID +Y
Sbjct: 1170 LRMKARGGS--ARSGDVVPYIFCVGEDGEASKSTQ--ADKAKHPDEVRRAGSEAKIDYEY 1225

Query: 1256 YASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
            Y + QI P + RLC  IEGT   RLA+CLGLDP++++S  S         +L   + D E
Sbjct: 1226 YLAHQILPPIERLCDPIEGTDRARLAECLGLDPNRYKS--SGEAEERQFGTLDSLMSDAE 1283

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE--KPSKPETEYNFWRTLRCPKCPEEV 1373
            R++  +P I+ C SC        V  SI    +   +PS P           CP C  ++
Sbjct: 1284 RFKDTDPFIVQCRSCQGEI----VFESIANRDTSLLRPSGPT----------CPGCQNQM 1329

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
             A  +       Q++ Q    ++ YY+   +CDD TC   T     R++G   R  +   
Sbjct: 1330 GAASLQ-----VQLEAQIREHINKYYESWTVCDDPTCGNRT-----RIMGVYGRRCLRNG 1379

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM------EISAKIPLEKELNKIRP 1487
               C G +  +Y +A LY QL ++  L D  + ++        EI A   ++ +    R 
Sbjct: 1380 ---CRGLVAFEYNDAQLYNQLRFYASLFDVDKALKSTTGARADEIRALADVQGDF--FRA 1434

Query: 1488 VVALAASTVQRIRERCAYGWVKLNDI 1513
            ++A     V +  ++C   WV+L+ +
Sbjct: 1435 MLA----AVNKYLDQCGRRWVELSGL 1456


>gi|328774387|gb|EGF84424.1| hypothetical protein BATDEDRAFT_85131 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 2388

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1180 (39%), Positives = 647/1180 (54%), Gaps = 186/1180 (15%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL  Y  D++E+      G +YLFGKV    T  H SCC+VVKN+QR ++ +P  
Sbjct: 1312 LEPDGSLKMYWFDSYEK-----HGIVYLFGKVYQPLTQRHVSCCLVVKNIQRNLFVLPR- 1365

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL-----------NV 435
            P+                         KL D  LG+ T+ A  + ++            +
Sbjct: 1366 PI-------------------------KLDD--LGIPTDTAVTMADVYQEFDTIRQKHQI 1398

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL 495
            S +    V R+YAF    IP+  +Y LK+ YPF +P LP+D+ G+ F  + GT + A+EL
Sbjct: 1399 SEFSSRSVSRKYAFELPNIPSESDY-LKVLYPFSEPELPSDISGKTFSRVFGTRTRAMEL 1457

Query: 496  FLVKRKVKGPSWLSISKFS-SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPV 552
             ++KRK+ GP W+SI     S P    VSWCK E   D PK IRV S S   A  + PP 
Sbjct: 1458 LILKRKLMGPCWISIKNVKVSTPM---VSWCKLEFIADDPKSIRVFSDSDPDAPKQAPPF 1514

Query: 553  TVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
             V +++L+T  N ++ VNEIVSAS +  +   I+         +       TVVR+L+  
Sbjct: 1515 VVMSLSLRTYMNHQKKVNEIVSASALVYNHVNIEGDTTDDNAVR------LTVVRQLNQI 1568

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
              P+ F + A  + +K     L    +E +LLN L+  +Y+LD DVLVGHNI  FDLDVL
Sbjct: 1569 PIPVEFMEMANRQRTK-----LVVLPNEMSLLNYLLANIYQLDPDVLVGHNIVDFDLDVL 1623

Query: 673  LHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA-GRLLCDTFLCS 731
            LHR ++ +  +  WS+IGRL+R+  P ++ G    G+G S      IA GRL+CDT+  +
Sbjct: 1624 LHRMKIHKTQN--WSRIGRLRRTVWPVMQTGAG--GTGDSSFSEREIASGRLMCDTYRTA 1679

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            +DL++  SYSLT LA +QL  +R  +    +   F   E LME++++ E D +L+ +LMF
Sbjct: 1680 KDLIQSKSYSLTSLAASQLKIERPNIDFDKIPSYFWNSEKLMEMVQHCEFDTFLTCQLMF 1739

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L VLPLT+QLTN++GN+W ++L GARA+R EYLLLH F  +KYI PDK           
Sbjct: 1740 KLQVLPLTKQLTNLAGNIWSRSLTGARAERNEYLLLHEFHDRKYITPDKV---------- 1789

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
              SN  V ++        D N    T     + G+R  AYAGGLVLEPKKG YDKY+L+L
Sbjct: 1790 -YSNRVVSNQ-------LDENDAEGTGAVTKKGGRRKAAYAGGLVLEPKKGFYDKYVLML 1841

Query: 912  DFNSLYPSIIQEYNICFTTVERSPDGLVPHLP----SSKTTGVLPELLKNLVQRRRMVKT 967
            DFNSLYPSIIQEYNICFTT+ RS D    H+P    SS   G+LP+LL  LV RR++VK 
Sbjct: 1842 DFNSLYPSIIQEYNICFTTIARSYDNNGDHMPTPPNSSVDRGILPKLLGTLVNRRQLVKG 1901

Query: 968  WMKTASGL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             MK       ++ Q DI+Q+ALKLTANSMYGCLGF N RFYA+PLA LIT +GREIL++T
Sbjct: 1902 LMKDPKNTPAELAQYDIRQKALKLTANSMYGCLGFVNFRFYAEPLAMLITSKGREILQNT 1961

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
            VDL + + NL+VIYGDTDSIMI++   D+A+ K I  ++ + VNK+Y  LEI+LDG ++R
Sbjct: 1962 VDLAEKS-NLDVIYGDTDSIMIYTNSTDLAEVKRIGQELKRAVNKRYNLLEIELDGFFER 2020

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            MLLLKKKKYAA+ V+ KDG     IE KGLD+VRRDW  +S +  ++ L QI S  + E+
Sbjct: 2021 MLLLKKKKYAAILVEEKDGQLKRTIETKGLDLVRRDWCGISFDASNYVLQQIFSGETREE 2080

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
             VE IH  L K+  ++RSG V LEK++I K LTK PE Y D  + PHVQVAL LK  G  
Sbjct: 2081 AVEQIHQYLNKLGVEVRSGTVPLEKFIINKGLTKNPEEYSDKNSLPHVQVALALKARG-- 2138

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                                                          D ++Y S Q+HP +
Sbjct: 2139 ----------------------------------------------DFNWYLSNQVHPPI 2152

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCE 1321
            +RLC  IEGT   RLAD LGLD +KF S        D S++ ++     + DEE+++  +
Sbjct: 2153 TRLCQHIEGTDTARLADSLGLDMTKFSSTAQSRSFDDTSAADIYTFESQISDEEKFKDIK 2212

Query: 1322 PLILSCPSC--SSTF---DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
                 C  C  SS F   D  A+    C +                    P C      G
Sbjct: 2213 RWSPRCIHCGESSEFKGADGTAMSGLTCAN--------------------PMC------G 2246

Query: 1377 RISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYP 1435
            +  P   +A Q++      + +Y    ++CDD +C   T + ++        G  C   P
Sbjct: 2247 QTMPIPSLAVQLRVAICAQMRVYLDQSVVCDDPSCLNITKATSV-------FGRRCL-VP 2298

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
             C G +  + ++  LY Q+ YF  L D     + +E SA+
Sbjct: 2299 GCKGTVFFQLSDRTLYLQMQYFESLFDIPHVTKTLEKSAE 2338



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 12/200 (6%)

Query: 15   RGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEAR 74
            R A+A ++ + L+RLK LR  G  S     Y +     I+D V E+EY+ L  R R E  
Sbjct: 931  RSADAYSKRQTLQRLKELRESGNTSLRD--YEVAGTADIFDVVTEEEYNTLSKRTRLED- 987

Query: 75   GFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKP 134
             F+VDD+G GY + G  EDW       SS DE  D   + K  + +  GK  N++  ++ 
Sbjct: 988  DFVVDDNGEGYANGGL-EDWDNPQSGQSSTDEDGDAINT-KFNKTKSTGKGGNSEKRKRD 1045

Query: 135  NPSLTAAAAMMGKQRLSAMLT-----STAMFKKSKDEKVKESESVIDEVLAEFAPDEADR 189
              SL   A   G   + +ML+     S    +K+ D+ ++ES  ++D +L       + +
Sbjct: 1046 KKSLVNPAT--GSASIVSMLSKQSKASEKSVQKTGDQTLEESTQLLDSILESLDDVVSTQ 1103

Query: 190  ERRRRSVSSNIKSFVSVNSV 209
            E +RR V S    F +  S+
Sbjct: 1104 EEKRRRVHSTTNEFSANTSI 1123


>gi|30984123|dbj|BAC76767.1| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea]
          Length = 1426

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1558 (34%), Positives = 794/1558 (50%), Gaps = 204/1558 (13%)

Query: 14   SRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLEN-PIYDTVAEDEYDALVARRREE 72
            SR  E  ++ EAL  LK  R GG+R        +K E+  IYD ++EDEY  +V  R + 
Sbjct: 8    SRSREKVSKLEALAELKRARAGGKRI-------LKEEDDQIYDEISEDEYRNIVKGRLQR 60

Query: 73   ARGFIVDDDGL-GYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV 131
                I D +G  GY D G E+DW       +SD++S  G+R        K  KK      
Sbjct: 61   DDFVIEDGEGSSGYVDNG-EDDW--LDTRDASDEDSDRGKR--------KTSKKNGKAKT 109

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF----APDEA 187
             KP       A       ++A     +         V++ +  +  +L +     AP  A
Sbjct: 110  TKPK-EKAKPAPPPVAPSINAYRPQVS---------VEQEQDFMAGLLGQLDKTPAPRVA 159

Query: 188  DRERRRRS---VSSNIKSF-VSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV-- 241
               R+R++    SS+I S  +  + + ++   ++        ++ +     ++ + DV  
Sbjct: 160  SAARKRKTSPQFSSDIDSSPIRSSHIPSDDYFMSPKKRPRVHDAGMTPTIERMADLDVHT 219

Query: 242  ----VEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLL 297
                 E S E+ ++     +L   D  V+  ++  +E+    K  +      ST K    
Sbjct: 220  SSDGAESSNEVNYDDFFDDDLMMVDEEVKPVKQEPEELKLPKKTARAPAPVASTSKQEEP 279

Query: 298  SATAGWKEV------SGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM 351
                 W  V      S  N  L   +       S   ++ DGSL F+ +D  E     + 
Sbjct: 280  DVKPAWLSVYDTLAVSKDNETLGSAERPAIKGTSIDALEPDGSLRFFWIDYLE-----HE 334

Query: 352  GTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP----------NGPLFQTDEIMKLEK 399
            G LYL GK+K     T  SCCV +  ++R +YA+P           G + +TDEI   E 
Sbjct: 335  GRLYLVGKLKDKKSDTWVSCCVTIDGLERNLYALPREKRIDFDEDTGEVTETDEIPTDED 394

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
              ++       F +  Q               N+ + +Y    VKR YAFG+ ++P GE 
Sbjct: 395  VLDD-------FEQLRQ---------------NMKIKSYKTRFVKRNYAFGEKDVPRGET 432

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
              LKI Y   +P  P  +   N   + GT++SA E+F++KRK+ GP WL I   +     
Sbjct: 433  GWLKIVYHSLNPD-PMGVWSPNISHIFGTNTSAFEIFVLKRKIMGPCWLEIK--NPVVEF 489

Query: 520  QRVSWCKYEITVDSPKDIR-VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
            + VSWC++E +V  PKD+  +S S     EVPP TV +++++TV N  ++  E+V AS  
Sbjct: 490  KGVSWCRFEASVADPKDVSPMSESLDQAKEVPPFTVMSLSVRTVVNHHENKREVVCASTR 549

Query: 579  CCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
              H   ID      +   P  L  S  T +R LD   FP  F  E   +     S     
Sbjct: 550  TWHNISID------DGAPPEQLPCSVQTFIRPLDR--FPPNFESETKKKTRGRFSPRRTS 601

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
            E S    L+ L+  + K D D+++GH   G  LDVLLHR +  +V    WS++GR +RS+
Sbjct: 602  ECS----LSLLLAAINKSDPDIIIGHEFLGVSLDVLLHRMKDLKV--DHWSRLGRFRRSK 655

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLTQLAKTQLNKDRK 755
             P + K  T          +  + GRL CD     ++ ++   ++SLT++  T L  +R+
Sbjct: 656  WPNIGKQGTN---------VRFLNGRLTCDLASDAAKSMISSTTWSLTEMCSTHLGLERQ 706

Query: 756  EVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
            ++ P D         S    +M  +++ E DA   M +   + +LPLTRQLTN++GN W 
Sbjct: 707  DIDPDDTANYLDGSLSGPGKMMTFVQHCEMDAHYQMAIATKVQILPLTRQLTNLAGNAWN 766

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            KTL G RA+R EY+LLH F   KYI PDK TY K+T                  +  E A
Sbjct: 767  KTLNGGRAERNEYILLHEFHRLKYICPDK-TYGKKT------------------VPKETA 807

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
            + + D   +  ++ K    Y GGLV EPK+GL+D YIL++DFNSLYPSIIQEYNI FTTV
Sbjct: 808  DEEGDAPKSKAKRDK----YKGGLVFEPKRGLWDSYILVMDFNSLYPSIIQEYNIDFTTV 863

Query: 932  E-----RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQ 984
            +      + +  +P  PS K  GVLP L+  LV RRR VK+ MK  TA+  K+ Q DI+Q
Sbjct: 864  DPPEVDENGEEKIPDPPSDKDKGVLPRLIATLVNRRRQVKSLMKDRTATPAKLLQYDIKQ 923

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            QALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  T +L ++ LNL+VIYGDTDS
Sbjct: 924  QALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTRTRELAES-LNLDVIYGDTDS 982

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
            + ++SG++D A+A   +    + VN +Y  LEIDLD +++R+LLL+KKKYAA+KV+  DG
Sbjct: 983  VFVNSGVNDFAEALKTSAIFKKAVNDQYNLLEIDLDCVFQRLLLLQKKKYAALKVE--DG 1040

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                V E KGLDM RR++  LSKEV  + L++ILS  S EDVVE+IH  L  + +++RSG
Sbjct: 1041 SRTSV-EVKGLDMKRREYCALSKEVSQYVLARILSGDSTEDVVETIHEYLGTMSQNVRSG 1099

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            QV LE +++ K L K PE YPDAK+QPHVQVALR+K  G S     GD +PYI C  +G 
Sbjct: 1100 QVKLEDFIVFKRLGKNPEDYPDAKSQPHVQVALRMKAKGQS--ARGGDVIPYIFCLGEGE 1157

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
             S  +   A RARHPDE+++G G   ID ++Y + Q+ P + RLC +IEGT   RLA+CL
Sbjct: 1158 ESARTTQ-ADRARHPDEVRRGAGVVKIDYEWYLAHQVLPPIERLCDAIEGTDRARLAECL 1216

Query: 1285 GLDPSKFQSKPSETMSSDPS--SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            GLDP+++++    T +SD     SL   + D ER++  +P  + C SC      P +   
Sbjct: 1217 GLDPNRYRT----TTASDEKFFMSLDSQMSDAERFKDADPFEVRCKSCQGKTKFPLLHDR 1272

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
                V                + C  C + +    +       Q++ Q    +S YY+G 
Sbjct: 1273 TIPLVRAS------------GVTCLSCDKPIAGVNLQL-----QLEVQIRAHISKYYEGW 1315

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
             +CD++TCK  T ++ +        G  C   P C GR+  +Y++  LY QL Y+ +L D
Sbjct: 1316 TVCDEQTCKNRTRAMGV-------YGKRCLK-PGCRGRVSFEYSDTKLYNQLRYYKYLFD 1367

Query: 1463 TQRGIEKMEISAKIPLEKELNKIRPVVALAAS-------TVQRIRERCAYGWVKLNDI 1513
             ++ ++    +     E+E   +  VV   A+        V++   +C   WV LN I
Sbjct: 1368 REKALKAARGTGS---EEE---VLAVVGSQATLLNNLSDVVEKYLNQCGRRWVDLNSI 1419


>gi|167519929|ref|XP_001744304.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777390|gb|EDQ91007.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1089

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1189 (40%), Positives = 682/1189 (57%), Gaps = 138/1189 (11%)

Query: 313  LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCC 370
            +D  K  L+  ES  EV     L  Y LDA E       G++YLFGKV      T+ SCC
Sbjct: 3    VDSTKLPLDTLESGEEV-----LHMYWLDAFEVSRNCGDGSIYLFGKVYHPESETYISCC 57

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            + V N++R ++ +P          ++L+++  E+           + V++    E   Q+
Sbjct: 58   LTVANLERNIFVVPRR--------LRLDREGVETN----------EAVSMADVYEEMGQI 99

Query: 431  LN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTH 489
            ++   ++ ++  PVKR+YAF + ++P  E  VLKI Y    P LP DL G+ F  + GT+
Sbjct: 100  MSRYKINPFLSKPVKRKYAFDKTDVPE-EVDVLKIKYSGTLPALPGDLSGQTFSHVFGTN 158

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
             S LE FL+KR + GP WL I       A + +SWCK E     PK I   S  +     
Sbjct: 159  ISPLERFLMKRDLMGPCWLRIKNVKG--ATKNISWCKLEALAVDPKSI---SKVEDPPAA 213

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            PP+TV A++L+T+ N +  ++EI++ + +   + ++D     +  K    LS  T +RKL
Sbjct: 214  PPLTVMALSLQTILNHKTHMHEILAMTGLVHQEVQLD----GNTSKPTEQLSQITNIRKL 269

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+ F  +   +  K     L    +ERAL++  +++L K+D DV+VGHNI GFDL
Sbjct: 270  GDNPFPLDFAVKL--QQQKRSVTTL---PNERALISHFLVKLQKIDPDVIVGHNIFGFDL 324

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
            DVLLHR +  R+P   WS+IGRL R+ +P L+ G  +  + A       +AGRL+ D   
Sbjct: 325  DVLLHRIKELRIPH--WSRIGRLHRTVLPNLKSGIGLQSNVAME--RDLLAGRLVMDMQT 380

Query: 730  CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD--------VLKMFQTLESLMELIEYGET 781
             SR+L+R+VSY LT L ++Q  K    + P          +L+     +SL++L+++ E 
Sbjct: 381  SSRELIRQVSYDLTALTQSQ-TKAPPAISPASSKLSQTMFMLQQISNTQSLLKLVDHVER 439

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L + LMF L+VLPL +Q+TNI+G L  +TL   R+ R E+LL H F  +KYIVPDK 
Sbjct: 440  DAYLILSLMFKLNVLPLMKQITNITGGLMSRTLSRGRSDRNEFLLCHEFHRRKYIVPDKP 499

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
            T+ +  K A + S  G   +  + L +E                +R PAY+GGLVLEPKK
Sbjct: 500  TWAE--KQAIKNSKQG---KKADNLADEPV--------------RRKPAYSGGLVLEPKK 540

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG---------LVPHLPSSKTT-GVL 951
            G YDK ILLLDFNSLYPSIIQEYN+CFTTV R+ DG          +  +P S    GVL
Sbjct: 541  GFYDKLILLLDFNSLYPSIIQEYNLCFTTVGRN-DGQPKSSEEEDAIAEVPDSALPRGVL 599

Query: 952  PELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            P LL+ L+ +RR VK  +K+ A   K+ + DI+Q+ALKLTANSMYGCLGF+ SRFYAK +
Sbjct: 600  PHLLRTLIAKRRQVKALIKSEADASKLAEYDIRQKALKLTANSMYGCLGFTGSRFYAKAI 659

Query: 1011 AELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
            A L+T +GREIL+ TVDL Q+ L LEVIYGDTDSIM++S   D ++A  +A +V +EVN 
Sbjct: 660  AALVTSKGREILQKTVDLTQDKLGLEVIYGDTDSIMVNSRCTDYSEAVTLANQVKKEVNS 719

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
             Y  LEIDLDG+YK MLLLKKKKYAA+ +    G      E KGLD+VRRDWS L+ + G
Sbjct: 720  LYSELEIDLDGIYKTMLLLKKKKYAALMMDMSKGKVTLTKEVKGLDIVRRDWSALAADAG 779

Query: 1131 DFCLSQILSER--SCEDVVESIHNSLMKVQEDMRS-GQVALEKYVITKTLTKPPEAYPDA 1187
            ++ L+Q+L++   S E +VE+ H  L +V ED+R+  +V LEK++I K+LTK P AY DA
Sbjct: 780  NWILNQVLNQEQDSTESLVETCHEHLRQVSEDVRTENKVPLEKFIIFKSLTKDPSAYGDA 839

Query: 1188 KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG 1247
            K  PHVQVALR+K +G S      DT+PYI+ CE GTS+G++    QR  HPDEL+K + 
Sbjct: 840  KALPHVQVALRMKAAGKSV--RMHDTIPYIV-CEDGTSNGAT----QRGYHPDELRKNE- 891

Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET-MSSDPSSS 1306
               ID +YY   Q+HPVVSRL   IEGT   ++A+CLGLD + F+     T + +D +  
Sbjct: 892  HLKIDYEYYLKSQVHPVVSRLLEPIEGTDNVKIAECLGLDTTTFKRAYEVTDVDTDMTMV 951

Query: 1307 LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAV---------CSSICMSVSEKPSKPETE 1357
            L   + DEER++  EPL ++C  C    D P V         C  +C         P  E
Sbjct: 952  LSTQLSDEERFKTAEPLTVTCRKCGHRTDLPGVFRMKDGVRQCGLLC---------PNAE 1002

Query: 1358 YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETC-KYTTCS 1416
                       C    E     P  ++N ++ +A  +++ YY   ++CDD  C +    +
Sbjct: 1003 -----------CTASFE-----PVYLSNLMQLEARKYIARYYDAALICDDAGCPRGHRET 1046

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR 1465
             +L ++G       C + P C G L + Y++  LY QL YF +L D + 
Sbjct: 1047 RDLSVLGRR-----CLD-PSCRGTLQQVYSDKQLYTQLCYFRNLFDVEH 1089


>gi|443900254|dbj|GAC77580.1| GPI-anchor transamidase [Pseudozyma antarctica T-34]
          Length = 1658

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1248 (38%), Positives = 679/1248 (54%), Gaps = 152/1248 (12%)

Query: 295  PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTL 354
            P  +  AG  + + GN     GK         FE  DD SL FY LD    L G N G +
Sbjct: 432  PTPAGPAGAVKTAVGNATPSAGKV------KAFE--DDKSLFFYWLD---YLEGEN-GVV 479

Query: 355  YLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFR 412
            YL GKVK   T  + SCC+ V  ++RC++ +P           +LE   E  R       
Sbjct: 480  YLVGKVKDKETGRYVSCCLTVNGIERCIFLLPRS--------KQLENGHETDR------- 524

Query: 413  KKLQDVALGLKTEIANQLLNLN----VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPF 468
                  A+G + EI ++   L+    +  ++   V R+YAF QA +PA  NY +KI Y F
Sbjct: 525  ------AVG-EDEIYDEFEELSAKHGIKRFLSKWVTRKYAFEQAGVPAESNY-MKIRYGF 576

Query: 469  KDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYE 528
             +P LP D KG  F   LGT++S  EL +VKR++ GPSWL IS  S       +SWCK E
Sbjct: 577  DEPQLPFDFKGRTFSKTLGTNTSPFELLVVKRRIFGPSWLKISNASIAEGSTPISWCKME 636

Query: 529  ITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
            + V+ PKDI   S +   +  E PP+TV ++ ++TV N +++  E+V+ S       +I+
Sbjct: 637  VAVEDPKDIAPISDTDTTSPRETPPLTVMSLAIRTVVNHKENKQELVAVSARTWTDHQIE 696

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
             P    +       S FT VR L G +FP GF  EA  R  K   + L     ER LLN 
Sbjct: 697  DPTPPEQLP----CSVFTAVRPL-GSMFPPGFEAEA--RKGKIKVHTL---KYERMLLNA 746

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
            L+ +++  D DV+VGH  +G  LDVLLHR +  R  +  WS++GR +R + PKL++G   
Sbjct: 747  LLAQIHNADPDVIVGHEFNGVSLDVLLHRMKDLR--ADHWSRVGRFRRPKWPKLKQGMN- 803

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVL 763
                     +  +AGRL+CD  L S   + ++   ++SLT++  T L   R+++ P +  
Sbjct: 804  ---------LKILAGRLVCD--LASDNGKSMIASTTWSLTEMCATHLKIQREDIDPEETA 852

Query: 764  KMFQTL----ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
              F +L    E L+  + + E D +  M +   + +LPLT+QLTN++GN W KTL G RA
Sbjct: 853  SFFDSLAPSPERLLTYVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGGRA 912

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            +R EY+LLH F  +KY+ PDK +  ++ ++  Q++         +            +S 
Sbjct: 913  ERNEYILLHDFHRQKYVCPDKISAWEKKQI--QQAAELKAKAKAKNGATGAGAAAAASSK 970

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-DGL 938
             D         + GGLV EPK+GL+DKYIL++DFNSLYPSIIQE+NI FTTVER P  GL
Sbjct: 971  KDK--------FKGGLVFEPKRGLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGL 1022

Query: 939  -----------------------------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTW 968
                                         +P +PSS    GVLP ++  LV RRR VK+ 
Sbjct: 1023 EDDDAVNPATVAAEDDAEAAAEGVVDGDKIPDVPSSDVEQGVLPRIIAQLVARRRQVKSL 1082

Query: 969  MK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK  +A+  ++ Q +I+Q ALKLTANSMYGCLGF NSRFYA+PLA L T +GREIL +T 
Sbjct: 1083 MKDKSATPSQLMQWNIKQLALKLTANSMYGCLGFENSRFYARPLAALTTFKGREILTATK 1142

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL ++ L L+V+YGDTDS+MI++   +  +A  I  +  + VN++Y+ LEID+DG+++RM
Sbjct: 1143 DLAESML-LDVVYGDTDSVMINTNATEYREAIRIGLEFKKSVNERYRLLEIDIDGVFERM 1201

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LLL+KKKYAAV V  +DG      E KGLDM RR++S LSK V ++ L QILS +  E V
Sbjct: 1202 LLLQKKKYAAVMVD-EDGK--RTTEIKGLDMKRREYSALSKNVSNYVLEQILSGQPTEVV 1258

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            VE IH  L  + + ++ G+VALE ++I K L K PE YPD K+QPHVQVALR+K  G S 
Sbjct: 1259 VEHIHEYLGDMADKIKRGEVALEDFIIYKRLGKNPEDYPDVKSQPHVQVALRVKARGGS- 1317

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD +PYI C  +  +S +    A RA HPDEL++ D +  +D ++Y + QI P + 
Sbjct: 1318 -ARMGDVIPYIFCLGEDGASSTKSAQADRAHHPDELRRKDSELKVDYEHYLALQILPPIE 1376

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQ----SKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
            RLC SIEGT   RLA+CLGLDP+K+     S     M     ++L   + DE R+  CEP
Sbjct: 1377 RLCESIEGTDRSRLAECLGLDPTKYSHVSASAGGAGMGDREFATLDSQIPDEVRFARCEP 1436

Query: 1323 LILSCPSC--SSTFDCPA--VCSSICMSV--SEKPSKPETEYNFWRT--LRCPKCPEEVE 1374
            L L+CPSC  +S F  PA    SS   SV      +KPE E N   T  +RC        
Sbjct: 1437 LELTCPSCRETSRFLGPAHRASSSTASSVLRDSTNAKPE-ERNAISTKGIRC----TNAA 1491

Query: 1375 AGRISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR-----LIGDA--- 1425
              R+ P   ++ Q++     +V  YY G   C D  C   T   ++       + D+   
Sbjct: 1492 CQRMLPLATVSIQLELAIRKYVERYYAGWTECSDANCHSRTRMASVYAKRCIAVHDSKSA 1551

Query: 1426 ---ERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
               E  +       C GR+   Y +  LY QL YF  L+D  R  E++
Sbjct: 1552 ALLEATSTVGGQLACRGRVEPCYRDKQLYDQLIYFESLVDAARIRERV 1599


>gi|388857734|emb|CCF48628.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
            [Ustilago hordei]
          Length = 1670

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1253 (38%), Positives = 677/1253 (54%), Gaps = 156/1253 (12%)

Query: 295  PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTL 354
            P  +A  G  +++ GN     GK         FE   D SL FY LD    L G N G +
Sbjct: 438  PTPAAANGATKIATGNATPSAGKV------KAFE--QDKSLFFYWLD---YLEGEN-GVV 485

Query: 355  YLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFR 412
            YL GKVK   +  + SCC+ V  ++RC++ +P   LF        E   E  R+      
Sbjct: 486  YLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRSKLF--------ENTHETDRV------ 531

Query: 413  KKLQDVALGLKTEIANQLLNLN----VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPF 468
                   +G + EI ++  +L+    +  ++   V R+YAF QA +PA  NY +KI Y F
Sbjct: 532  -------VG-EDEIYDEFEDLSAKHGIKRFLSKWVTRKYAFEQAGVPAESNY-MKIRYGF 582

Query: 469  KDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYE 528
             +P LP D KG  F    GT++S  EL +VKR++ GPSWL I   S       +SWCK E
Sbjct: 583  DEPQLPFDFKGRTFSKAFGTNTSPFELLVVKRRIFGPSWLKIQNASIAEGSTPISWCKME 642

Query: 529  ITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
            +++D PKDI   S +   +  E PP+TV ++ ++TV N +++  E+V+ S       +I+
Sbjct: 643  VSIDDPKDISPISDADTTSPRETPPLTVMSLAIRTVVNHKENKQELVAVSARTWTDHQIE 702

Query: 587  TPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644
             P        P  L  S FT VR L G +FP GF  EA  R  K   + L     ER LL
Sbjct: 703  DPT------PPEQLPCSVFTAVRPL-GNMFPPGFEAEA--RKGKIKIHTL---KYERMLL 750

Query: 645  NRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGR 704
            N L+ +++  D DV+VGH  +G  LDVLLHR +  R  +  WS++GR +R + PKL++G 
Sbjct: 751  NALLAQIHNADPDVIVGHEFNGVSLDVLLHRMKDLR--AEHWSRVGRFRRPKWPKLKQGM 808

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
                       +  +AGRL+CD  L S   + ++   ++SLT++  T L   R+++ P +
Sbjct: 809  N----------LKILAGRLVCD--LASDNGKSMITSTTWSLTEMCGTHLKIQREDIDPEE 856

Query: 762  VLKMFQTL----ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
                F +L    E L+  + + E D +  M +   + +LPLT+QLTN++GN W KTL G 
Sbjct: 857  TASFFDSLAPSPERLLTFVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGG 916

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            RA+R EY+LLH F  +KYI PDK +  ++ ++ +                N  A      
Sbjct: 917  RAERNEYILLHDFHRQKYICPDKISAWEKKQIQQAAELKAKAKAKNAGGVNNAA-----A 971

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-D 936
            S    +K K    + GGLV EPK+GL+DKYIL++DFNSLYPSIIQE+NI FTTVER P  
Sbjct: 972  SVVSSKKDK----FKGGLVFEPKRGLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQ 1027

Query: 937  GL---------------------------------VPHLPSSKT-TGVLPELLKNLVQRR 962
            GL                                 +P +PSS    GVLP ++  LV RR
Sbjct: 1028 GLEDEGISASSTAAATGEDGSDSTFPTAAAVDVDKIPDIPSSDVDQGVLPRIIAQLVARR 1087

Query: 963  RMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R VK+ MK  +A+  ++ Q +I+Q ALKLTANSMYGCLGF NSRFYA+PLA L T +GRE
Sbjct: 1088 RQVKSLMKDKSATASQLMQWNIKQLALKLTANSMYGCLGFENSRFYARPLAALTTFKGRE 1147

Query: 1021 ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            IL +T DL ++ L L+VIYGDTDS+MI++   +  +A  I  +  + VN++Y+ LEID+D
Sbjct: 1148 ILTATKDLAESML-LDVIYGDTDSVMINTNATEYKEALRIGQEFKKSVNERYRLLEIDID 1206

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            G+++RMLLL+KKKYAAV V  +DG      E KGLDM RR++  LSK V ++ L QILS 
Sbjct: 1207 GVFERMLLLQKKKYAAVLVD-EDGK--RTTEIKGLDMKRREYCALSKNVSNYVLDQILSG 1263

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E VVE IH  L  +   +++G+VAL+  +I K L K PE YPD K+QPHVQVALR+K
Sbjct: 1264 QPTEIVVEHIHEYLSAMSTKIKTGEVALDDLIIYKRLGKNPEDYPDVKSQPHVQVALRMK 1323

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            Q G S     GD +PYI C  +  SS S    A+RA HPDEL++ D +  +D ++Y + Q
Sbjct: 1324 QRGGS--ARMGDVIPYIFCLGEDGSSSSKTAQAERAHHPDELRRKDSELKVDYEHYLALQ 1381

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKF-QSKPSETMSSDPSSSLLFA-----VGDE 1314
            + P V RLC SIEGT   RLA+CLGLDP+K+  S  S   +   +    FA     + D+
Sbjct: 1382 LLPPVERLCESIEGTDRSRLAECLGLDPTKYSHSTTSSAGAGVGAGETEFATLDSQIPDQ 1441

Query: 1315 ERYRGCEPLILSCPSC--SSTFDCPA--VCSSICMSVSEKPSKPETEYNFWRT--LRCPK 1368
             R+  CEPL L+CPSC   STF  PA    S+    +++  +  E   N   T  +RC  
Sbjct: 1442 VRFAQCEPLTLTCPSCRQRSTFLGPAHRPTSTTPRILTDATNTKEETRNAISTSGIRCTN 1501

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR-----LIG 1423
                +    +    +  Q++      +S YY G   C D  C   T   ++       + 
Sbjct: 1502 ATCSLP---LPLATVTIQLELSIRTHISRYYAGWTECSDRNCASRTRMASVYAKRCLAVH 1558

Query: 1424 DAERGTV------CPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
            D++   +        ++  C GR+   Y +  LY QL Y   L D  R  EK+
Sbjct: 1559 DSKSAALLDATSNTGSHLACRGRVEPVYKDKQLYDQLVYLESLFDVGRIKEKV 1611



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 18/144 (12%)

Query: 25  ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
           AL  LKA R G   +  +       ++ IYD V+EDEY +++ R R     FI DDDG G
Sbjct: 10  ALAALKAKRDGLAPTNATSADLSDDDDAIYDQVSEDEYRSIL-RGRIMDNDFIEDDDGSG 68

Query: 85  YGDEGQEE-DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAA 143
           Y D GQ+E D  V G     DDE  D +   +++  E+ GK       RKP     A + 
Sbjct: 69  YVDHGQDEWDDRVRG----DDDEDQDTEN--EQEYFERTGK-------RKPKKGTKARSK 115

Query: 144 MMGKQRLSAML---TSTAMFKKSK 164
           + G    S+     + TA F K +
Sbjct: 116 LKGAHASSSAYQKSSLTAAFSKQR 139


>gi|409040591|gb|EKM50078.1| hypothetical protein PHACADRAFT_213841 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1452

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1289 (37%), Positives = 690/1289 (53%), Gaps = 136/1289 (10%)

Query: 262  DNFVEVKEKVKDEVN---------EDVKECK-KLNAKISTEKDPLLSATAGWKEVSGGNM 311
            D F+E+ E + D  +         E+V+E K   + K+ +++   L  T  W  V     
Sbjct: 251  DAFMEIDEDLLDPPSKPAPKAVKKEEVQEIKLAPSQKLKSDEKKSLDETPAWLSVYDSLT 310

Query: 312  VLDEGKSG--------LNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAG 363
            V  +   G         N  +    +++DGSL F+ LD  E       G LY  GK +  
Sbjct: 311  VTKDDTLGPAAGSSAKANGSKDASVLEEDGSLRFFWLDYLEY-----EGKLYFIGKTQDK 365

Query: 364  STHH--SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG 421
             T    SCCV V+N++R ++ +P           ++E+D E   +        LQDV   
Sbjct: 366  KTRLWLSCCVTVENLERNLFILPRE--------RRVEEDPETGELYETDVTPTLQDVY-- 415

Query: 422  LKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGEN 481
               +         ++ +    VKRRYAFG+ ++P  E   LK+ Y F  P + A++   N
Sbjct: 416  --GDFDRVRKKAGINGFKAKFVKRRYAFGEKDVPRTETQWLKVVYGFDQPQISANISSPN 473

Query: 482  FCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV-- 539
            F  + GT +SA EL ++KRK+ GP WL I K       + VSWCK E TV  PKDI    
Sbjct: 474  FSRVFGTTTSAFELLVLKRKIMGPCWLQIKK--PVMEHKGVSWCKVEATVTDPKDINPFP 531

Query: 540  SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGM 599
             + S    EVPP+TV +++++T+ N + ++ E+V AS       +++ P        P  
Sbjct: 532  ETDSNAPKEVPPLTVMSLSMRTIVNHQANIREVVCASARIWSNLQLEDPT------PPES 585

Query: 600  L--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSD 657
            L  S  T VR LD       F     +R    G  V+    +ER LLN L+  ++K D D
Sbjct: 586  LPCSVHTFVRPLDR------FAPNFENRARMNGKGVIHPMQTERVLLNNLLASVHKADPD 639

Query: 658  VLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIM 716
            V+VGH+  G  LDVLL R +  +  +  +S+IGR +RS+ P + R+G            +
Sbjct: 640  VIVGHDFVGDSLDVLLRRMRDLK--ADHFSRIGRFRRSKWPNIGRQGTN----------L 687

Query: 717  SCIAGRLLCDTFLCS-RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLES 771
              + GRL+CD    S + ++   ++SL ++ KT L  DR+++ P D    F     + + 
Sbjct: 688  KFLNGRLMCDLASDSAKGMISSTTWSLMEMCKTHLKSDRQDIDPDDTASYFDGSLSSPDR 747

Query: 772  LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR 831
            L+  + + E DA   M L   + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F 
Sbjct: 748  LLTFVRHCELDAHYQMALAAKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 807

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
              KYI PDK    K   +AK                   A   +       +   +   Y
Sbjct: 808  RLKYICPDKQWGKKAEAVAK-------------------AENGDGEGEGGKKGKSKRDKY 848

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLVPHLPSSKT 947
             GGLV EPK+GL+DK+IL++DFNSLYPSIIQEYNI FTTVE   D      +P +P+  T
Sbjct: 849  KGGLVFEPKRGLWDKFILVMDFNSLYPSIIQEYNIDFTTVEPVEDEDGEDKIPEVPNQGT 908

Query: 948  -TGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSR 1004
              GVLP L+  LV RRR VK+ MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SR
Sbjct: 909  EQGVLPRLIATLVNRRRQVKSLMKDRKATQAQLLQWDIKQMALKLTANSMYGCLGFEYSR 968

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
            FYA+PLA L T +GREIL  T +L ++ L L+V+YGDTDS+ ++S + ++A+A  I+ + 
Sbjct: 969  FYARPLAALTTFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTELAEALKISAEF 1027

Query: 1065 IQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
             + VN +YK LEIDLDG+++R+LLL+KKKYAAVKV+  DG    V E KGLDM RR++  
Sbjct: 1028 KKAVNDRYKLLEIDLDGVFQRLLLLQKKKYAAVKVE--DGTRTSV-EVKGLDMKRREYCA 1084

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            LSK V  + L QILS  + E VVE++H  L  +  D+R+G+V L++++I K L K PE Y
Sbjct: 1085 LSKNVSQYVLEQILSGEATETVVENVHEYLSTMSGDVRAGKVKLDEFIIFKRLGKNPEDY 1144

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
            PDAK+QPHVQVALR+K  G  +   +GD +PYI C  +G  S  S   A+RA+HPDE+K+
Sbjct: 1145 PDAKSQPHVQVALRMKAKG--SAARSGDVIPYIFCLGEGGESSKSAQ-AERAKHPDEIKR 1201

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
                  ID +YY SQQI P + RLC  IEGT   RLA+CLGLDPS++++           
Sbjct: 1202 AGSDLRIDYEYYLSQQILPPIERLCEPIEGTDRARLAECLGLDPSRYRNATGTESEGRHF 1261

Query: 1305 SSLLFAVGDEERYRGCEPLILSCPSC-SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRT 1363
             SL   + D ER++  EPL++ C +C + T   P    S  M                  
Sbjct: 1262 GSLDSLMSDAERFKDSEPLLMRCRACKAETAFSPIDDRSASMLTPA-------------G 1308

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
            +RCP C   + A  +       Q++ Q    V+ YY+G  +C D+TC   T     R++G
Sbjct: 1309 VRCPACEAAIGAASVQV-----QLEVQIRAHVARYYEGWTICKDQTCGGRT-----RMMG 1358

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN 1483
               R  +    P C G +  +Y++A +Y QL Y+ H+ D ++ + K  +S +   E E  
Sbjct: 1359 VYGRRCL---RPACKGIVAFEYSDAQMYNQLRYYAHVFDVEKAL-KGAVSRRAVEELEGI 1414

Query: 1484 KIRPVVALAA--STVQRIRERCAYGWVKL 1510
            ++     L A   TV +   +C   WV L
Sbjct: 1415 RVTQAELLDAVQGTVDKYLAQCGRRWVDL 1443


>gi|296235154|ref|XP_002762781.1| PREDICTED: DNA polymerase alpha catalytic subunit [Callithrix
            jacchus]
          Length = 1462

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1520 (34%), Positives = 816/1520 (53%), Gaps = 171/1520 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R          EALE+LK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRARREKKSKKRCQEALEKLKK-----AKAGEKCKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG         
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDAGEKGKDG--------- 113

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES-ESVIDEV 178
              + + ++ +N++KP        A+   + + +M  + A  KK  D+ V  S + ++ ++
Sbjct: 114  --KARNKDKRNLKKP--------AVTKPKNIKSMFIACAG-KKIADKAVDLSKDDLLGDI 162

Query: 179  L-------AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK------- 224
            L        +  P      ++R SV ++   F         S  +    +  +       
Sbjct: 163  LQDLNTETPQITPPPVMILKKRTSVGTSPNPFSVYTPTAVPSGKIAFPVSRKEPPLTPVP 222

Query: 225  -ENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKE 281
             + ++     VQ ++ +  +ES  +++E  +  E  + +  +   V  K  D+ +E  +E
Sbjct: 223  FKRAEFAGEPVQAESTEEEQESGPMEFEDGDFDEPMEAEEVDLEPVAAKTWDQESEPAEE 282

Query: 282  CKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDD 332
             K+   ++   K  +    + + +VS  + V  EG S  + +E + +          D++
Sbjct: 283  VKQ---EVDPGKGTMSYLGSVFPDVSCWD-VDQEGDSSFSVREVQVDSSHLPLVKGADEE 338

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
                FY LDA+E       G +++FGKV  ++  TH SCCV+VKN++R +Y +P      
Sbjct: 339  QVFHFYWLDAYEDQYN-QPGVVFMFGKVWIESAQTHVSCCVMVKNIERTLYFLPRE---- 393

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
                MK++ +  +   +P++    ++DV      +IA +     +  +   PV++ YAF 
Sbjct: 394  ----MKIDLNTGKETGTPVS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFE 442

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
              ++P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +
Sbjct: 443  IPDVPEKSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEV 501

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
               S     Q +SWCK E     P  + V    K V   PP+ + A ++KT+ N +   N
Sbjct: 502  K--SPQLLNQPISWCKVEAMALKPDLVNVI---KDVGP-PPLVMMAFSMKTMQNAKNHQN 555

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI++ + +  H   +D         +P   S+  VV K    IFP  F +E   +N K  
Sbjct: 556  EIIAIAALVHHNFALDKAA-----PQPPFQSYLCVVSKPKDCIFPYAFKEEIEKKNVKVE 610

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
                   ++ER LL   +  ++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIG
Sbjct: 611  -----VAATERTLLGFFLANIHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIG 663

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
            RLKRS MPKL  GR+ FG        +   GR++CD  + +R+L+R  SY L++L +  L
Sbjct: 664  RLKRSNMPKL-GGRSGFGE------RNATCGRMICDVEISARELIRCKSYHLSELVQQIL 716

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             K+R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+ 
Sbjct: 717  KKERAIIPMENIRNMYSDSSQLLYLLEHTWKDANFILQIMCELNVLPLALQITNIAGNIM 776

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             +TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED
Sbjct: 777  SRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDED 820

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
               D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTT
Sbjct: 821  EEIDGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 878

Query: 931  VER--------SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLK 976
            V+R        + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   
Sbjct: 879  VQRVAAEAQKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKLQDLNPDL 938

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
            + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLE
Sbjct: 939  MLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLE 997

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA 1096
            VIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA
Sbjct: 998  VIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAA 1057

Query: 1097 VKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            + V+   DG      E KGLD+VRRDW  L+K+ G F + QILS++S + +VE+I   L+
Sbjct: 1058 LVVEPTSDGKYITKQELKGLDIVRRDWCDLAKDTGSFVIGQILSDQSRDIIVENIQKRLI 1117

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            ++ E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV 
Sbjct: 1118 EIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVS 1176

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+IC       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G 
Sbjct: 1177 YVIC-----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGI 1230

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSS 1332
                +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +
Sbjct: 1231 DAVLIAAWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCRCPTCGT 1288

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQ 1390
                     +I  +V +  S  + E + +R   + C   P            ++N++   
Sbjct: 1289 --------ENIYDNVFDG-SGTDMEPSLYRCSNIDCNASPLTFTV------QLSNKLIMD 1333

Query: 1391 ADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADL 1450
               F+  YY G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  L
Sbjct: 1334 IRRFIKKYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSL 1388

Query: 1451 YKQLTYFCHLLDTQRGIEKM 1470
            Y QL ++ ++ D    +EK+
Sbjct: 1389 YTQLCFYRYIFDVDCALEKL 1408


>gi|440796401|gb|ELR17510.1| DNA polymerase (pol2), putative [Acanthamoeba castellanii str. Neff]
          Length = 1352

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1205 (37%), Positives = 669/1205 (55%), Gaps = 157/1205 (13%)

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV---KAGSTHHSCCVVVKNMQRCV 380
            +++  ++ DGSL FY LDA E+    N G +++FGKV   K  +   SCC+  +N+ R +
Sbjct: 201  DTDLPLEKDGSLLFYWLDAAEE-KQVNPGVVFMFGKVCVNKTTNQFASCCITARNVPRSL 259

Query: 381  YAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIV 440
            + +P           K+  D  +   +P+     +QDV    + EI +     N+    +
Sbjct: 260  FVVPR---------QKMLDDQRQETDTPVT----MQDV----RAEIGSLRKEYNMGQLRM 302

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKR 500
              V+R+Y F +  +P GE+  LK+        LPA+L G++F  + G  +SA E  L+KR
Sbjct: 303  KSVRRKYPFDKEGVPRGESDFLKV-ICSSSVHLPANLSGQSFSHIFGATTSATESLLIKR 361

Query: 501  KVKGPSWLSISKFSSCPAP-----QRVSWCKYEITVDSPKDIRVSSSSK----HVAEVPP 551
             + GP WL I+  +   A      Q+++WCK+E  VD+  DI V +  +     +   P 
Sbjct: 362  HLMGPGWLKITNVAEDNAKLRRGVQQITWCKFEGHVDNITDINVLTPDQCPGGRLPREPA 421

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            + V A+++K+  N     NEIV AS +   +    TP   S+++       F ++R L G
Sbjct: 422  LVVMALHIKSHLNTNAGKNEIVIASGIVHTQGS--TPNPESQYQ------CFAMIRSLTG 473

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
              FP  F + A     +          SER LL  LM ++ + D DV+VGHN  G+DLD+
Sbjct: 474  HNFPDNF-RNAIQAKQRGKKQQYIIAPSERNLLGGLMGKIAEYDPDVIVGHNFLGWDLDI 532

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI-MSCIAGRLLCDTFLC 730
            LLHR Q C VP + WSK+GRL+RS  PK+ +G  + G+G +     + +AGRL+CDT+  
Sbjct: 533  LLHRMQACNVPCAEWSKLGRLRRSRFPKMNQG--VGGTGDTTWQEKAVMAGRLVCDTYHS 590

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHD----VLKMFQTLESLMELIEYGETDAWLS 786
            +++ +R  +Y L +LAK QL KDR ++ P D    V   F   + L+ LI +   DA+L+
Sbjct: 591  AKEFVRHKNYRLGELAKVQLGKDRPDL-PMDEENNVAPYFSKTDMLLTLINHCGNDAYLA 649

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAK---KYIVPDKFTY 843
            + LMF + VLPLT+ LTN+ GNLW ++L GARA+R+EYLLLH F  +    +I PD+   
Sbjct: 650  ISLMFKIEVLPLTKHLTNVCGNLWSRSLMGARAERIEYLLLHRFHDQPKPHFICPDR--- 706

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                                   + ED  F+         KGKR PAY GGLVL+PKKG 
Sbjct: 707  ----------------------ASQEDGKFN---------KGKRKPAYEGGLVLDPKKGF 735

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            YD YILLLDFNSLYPSIIQEYNICFTT++R                   E++  LV RR 
Sbjct: 736  YDTYILLLDFNSLYPSIIQEYNICFTTIDR-------------------EVVYELVNRRG 776

Query: 964  MVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  +K       + QQL+++Q ALKL ANSMYGCLGFS+SRF+A  LAELIT +GRE 
Sbjct: 777  AVKKQLKAERDGSERFQQLNVKQLALKLVANSMYGCLGFSHSRFFAMALAELITLKGREA 836

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI----------------AKAKAIAGKVI 1065
            L++T +  +  LNL+VIYGDTDSIM+++ I  +                ++ + +   + 
Sbjct: 837  LKTTKEQAEGQLNLDVIYGDTDSIMVNTRIPSVPAPDADPALRDSASVLSQVRKMGNDLK 896

Query: 1066 QEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
            + +N++Y  +EID+DG++K +LLL KKKYAA+ +   + +     E KGLD+VRRDW  L
Sbjct: 897  KVINQRYSHVEIDIDGIFKMILLLAKKKYAALTI--GNDINDVKKEMKGLDLVRRDWCDL 954

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
            SKE+G   L +I+S +  +DVV  IH+ L  +   ++SG+++LEK+VITK L+K P+AYP
Sbjct: 955  SKEMGQRVLDEIMSGKPRQDVVSGIHSYLTHMGSQIKSGRISLEKFVITKCLSKDPDAYP 1014

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
            D K  PHVQVAL+L+Q       S G+ + Y+IC       G +V  A+RA  PD+++K 
Sbjct: 1015 DKKGLPHVQVALKLRQQNRKV--SVGEYIRYVIC------KGDAVSAAERAFSPDQVEKS 1066

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS 1305
            DG   IDID+Y +QQIHP +SRLC  IEGT P ++A+CLGL+P+KFQS  +         
Sbjct: 1067 DGLLEIDIDWYLTQQIHPPLSRLCGPIEGTDPAQIAECLGLNPAKFQSHVATEGDEQSLD 1126

Query: 1306 SLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSV-SEKPSKPETEYNF 1360
            S  F     + D+E+++ CEPL+++CP C+  F        +  +  ++K  + E E + 
Sbjct: 1127 SFSFVPKSLMDDDEKFKNCEPLVVTCPWCTKAFVFHGAGLKLPGNQKADKGKEKEDEESL 1186

Query: 1361 W--------RTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKY 1412
                        +C KC       R   G I+N V  Q    +  YY+  ++C D TC+ 
Sbjct: 1187 LLPSGAVRPSDFKCAKCGHV----RFEAGKISNLVTLQIRKHIKRYYEQWLVCTDPTCRL 1242

Query: 1413 TTCSLNLRLIGDAERGTV-C---PNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
             T + + +L     +GT+ C    N   CN  +  +Y+E DL+ QL Y+  L D  +  E
Sbjct: 1243 RTRT-DYKL---GSKGTIKCRAKKNGATCNNVMNIEYSEKDLHNQLQYYARLFDLSKLTE 1298

Query: 1469 KMEIS 1473
            + ++S
Sbjct: 1299 EQKLS 1303


>gi|348561319|ref|XP_003466460.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
            subunit-like [Cavia porcellus]
          Length = 1472

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1522 (35%), Positives = 811/1522 (53%), Gaps = 175/1522 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D   +VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSLVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      + ++  DG+   K ++ 
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLDDDAFDTSEKGKDGKTYNKDKKN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------PTVTKPNNIKSMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKEN---------SDLI 230
             +  P      +++RS+ ++   F SV++ K      T S    KE          ++ +
Sbjct: 177  PQITPPLVVIPKKKRSIRASQNPF-SVHTPKVIPSGKTASPAPRKEPPLTAVPLKPAEFV 235

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAK 288
               +Q ++ +  +ES  +++E ++  E  + +  N   V  K  D+ +E  +  K     
Sbjct: 236  GELMQPEHPEDEQESGVMEFEDNDFDEPLEAEEMNMEPVAAKTWDQQSEPAEGVKH---- 291

Query: 289  ISTEKDPLLSATAGWKEVSGGNMVLD---EGKSGLNCQESEFE---------VDDDGSLP 336
               + DP    T+    V       D   E     + QE + +          D+D    
Sbjct: 292  ---KADPKKGMTSSLGSVLPDVSCWDIDQEDDISFSAQEVQVDSSQLPLVKGADEDQVFQ 348

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          
Sbjct: 349  FYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCVMVKNIERMLYFLPRE-------- 399

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ +  +   +P+     ++DV       IAN+   +   + ++   ++ YAF   ++
Sbjct: 400  MKIDSNTGKETGTPVT----MKDVYDEFDERIANKYKIMKFKSKVL---EKNYAFEIPDV 452

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +    
Sbjct: 453  PEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQ 511

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV--PPVTVTAINLKTVFNKRQDVNEI 572
                P  +SWCK+E     P  + V      V +V  PP+ V + ++KT+ N +   NEI
Sbjct: 512  LLNQP--ISWCKFEAVALKPDLVTV------VKDVGPPPLVVMSFSMKTMQNAKNHQNEI 563

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSN 632
            ++ + +  H       ML     +P   SHF VV K    IFP  F +    +  K    
Sbjct: 564  IAIAALVHHSF-----MLDKAPPQPPFQSHFCVVSKPKDCIFPCAFKEVIKKKKLKVEV- 617

Query: 633  VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL 692
                  +ER LL   + +++KLD D++VGHNI GF+L+VLL R  VC+VP   WSKIGRL
Sbjct: 618  ----AETERTLLGFFLAKVHKLDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRL 671

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK 752
            KRS MPKL       GS +  G  +   GR++CD  + +++L+   SY L++L +  L  
Sbjct: 672  KRSNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKT 724

Query: 753  DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            +R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +
Sbjct: 725  ERIIIPVENMRNMYSESSHLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSR 784

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +E+  
Sbjct: 785  TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEEEE 828

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D DTS   ++KG++  AY+GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+
Sbjct: 829  IDGDTSK--YKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQ 886

Query: 933  RSPDGL-----------VPHLP-SSKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKI 977
            R    L           +P LP +S   G+LP  ++ LV+RR+ VK  MK       L +
Sbjct: 887  RVASELQKAAEDGEEEQIPELPDASLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLAL 946

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEV
Sbjct: 947  -QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTFKGREILMHTKEMVQ-KMNLEV 1004

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            IYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+
Sbjct: 1005 IYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAAL 1064

Query: 1098 KVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
             V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS+++ + +VE+I   L++
Sbjct: 1065 VVEPASDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIE 1124

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK-QSGYSTGCSAGDTVP 1215
            + E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +  Q+G      AGDTV 
Sbjct: 1125 IGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQAGRKV--KAGDTVS 1182

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+IC       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G 
Sbjct: 1183 YVIC-----QDGSNLSASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGI 1236

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCS 1331
                +A  LGLDP++F+         D  +  L      + DEE+YR CE     CP+C 
Sbjct: 1237 DAALIATWLGLDPAQFR---VHHYHKDEENDALLGGPAQLTDEEKYRDCEKFKCPCPACG 1293

Query: 1332 STFDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKR 1389
            +         +I  SV +  S  + E + +R   + C   P            ++N++  
Sbjct: 1294 T--------ENIYDSVFDG-SGTDMEPSLYRCSNIDCKASPLTFVV------QLSNRLIM 1338

Query: 1390 QADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEA 1448
                 +  YY G ++C++ TC+  T  L L+    +  G +C   P C   ++R +Y++ 
Sbjct: 1339 DIRRCIKKYYDGWLLCEEPTCRNRTRHLPLQF---SRSGPLC---PACMKAVLRPEYSDK 1392

Query: 1449 DLYKQLTYFCHLLDTQRGIEKM 1470
             LY QL ++ ++ D    +EK+
Sbjct: 1393 SLYTQLCFYRYIFDADCALEKL 1414


>gi|291407253|ref|XP_002720044.1| PREDICTED: DNA-directed DNA polymerase alpha 1 [Oryctolagus
            cuniculus]
          Length = 1469

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1517 (34%), Positives = 805/1517 (53%), Gaps = 164/1517 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++    IVDDDG+GY ++G+E              ++ +  + +K     
Sbjct: 71   QYSKLVQARQDDDW--IVDDDGIGYVEDGRE---IFDDDLEDDTLDASEKGKDVKTHSKG 125

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            KR  K+   +V KPN   T   A  GK+      T+      SKD+ + +    ++    
Sbjct: 126  KRNVKK--PSVTKPNNIKTMLIAGAGKK------TADKAVDLSKDDLLGDILQDLNTETP 177

Query: 181  EFAPDEADRERRRRSVSSNIKSFV-----SVNSVKTNSQLVTNS---TNSVKENSDLINN 232
            +  P      +++RS+ +++  F      +V S K+ S +V      T +  + ++ + +
Sbjct: 178  QITPPPVIIPKKKRSLGASLNPFSVRPSKAVPSGKSASPVVGKVPPLTPAPHKRAEFVGD 237

Query: 233  FVQIQNCDVVEESKELKWESDNSTELTKRDNF----VEVKEKVKD-EVNEDVKECKKLNA 287
             VQ +  +  +E   +++E  +  E  + +      V  K   ++ E  E V++      
Sbjct: 238  VVQGEPREDEQEPGAMEFEDGDFDEPMESEEVDIEPVAAKTWAQESEPAEAVQDVADPGR 297

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVD-----------DDGSLP 336
            + ++     L   + W        +  E  S L+ QE E  VD           ++    
Sbjct: 298  ESTSYLGSFLPDVSCWD-------IDQEDDSSLSAQEVEVHVDSSHLPLVKGADEEQVFQ 350

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCCV VKN++R +Y +P          
Sbjct: 351  FYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCVTVKNIERTLYFLPRE-------- 401

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ + E+   + +     ++DV      +IA +   +   + IV   ++ YAF   ++
Sbjct: 402  MKMDLNTEKETGTSVT----MKDVYDEFDEKIATKYRIMKFKSKIV---EKNYAFEVPDV 454

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   +
Sbjct: 455  PEKSEY-LEVRYSAELPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--N 511

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                 Q VSWCK E     P  + V          PP+ V + ++KT+ N +   NEI++
Sbjct: 512  PQLLNQSVSWCKVEAMALKPDLVNVVKD----VSPPPLVVMSFSMKTMQNAKSHQNEIIA 567

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         +P   SHF VV K    IFP  F +   ++N K      
Sbjct: 568  VAALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYAFTEVIKEKNVKVE---- 618

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D++VGHNI GFDL+VLL R  +C+VP   WSKIGRLKR
Sbjct: 619  -VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINMCKVPH--WSKIGRLKR 675

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
              MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 676  FSMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER 728

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 729  TVIPMENVQNMYSEPSHLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNVMSRTL 788

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D
Sbjct: 789  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDED-EMD 831

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
             DT  + ++KG+R  AYAGGLVL+PK G YDK++LLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 832  GDT--DKYKKGRRKAAYAGGLVLDPKVGFYDKFVLLLDFNSLYPSIIQEFNICFTTVQRV 889

Query: 934  -------SPDG---LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                   + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 890  VSEAQKVTEDGEQEQIPELPDPGLEMGILPREIRKLVERRKHVKQLMKQQDLNPDLVLQY 949

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 950  DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYG 1008

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   ++ +   +  K+  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+
Sbjct: 1009 DTDSIMINTNSTNLEEVFKLGNKIKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVE 1068

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E
Sbjct: 1069 PTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGE 1128

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC
Sbjct: 1129 NVLNGSVPVNQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC 1187

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     
Sbjct: 1188 -----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVL 1241

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDC 1336
            +A  LGLDP++F+   S     + + +LL     + DEE+Y+ CE     CP+C +    
Sbjct: 1242 IATWLGLDPTQFRV--SHYHKDEENDALLGGPAQLTDEEKYKDCEKFKCPCPTCGTENIY 1299

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGF 1394
              V   +           + E + +R   + C   P            + N++       
Sbjct: 1300 DNVFDGLGA---------DMEPSLYRCSNINCKASPLTFVV------QLCNKLVMDIRRC 1344

Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQ 1453
            +  YY G ++C++  C+  T  L L+    +  G +CP    C    +R +Y++  LY Q
Sbjct: 1345 IKKYYDGWLVCEEPMCRNRTRHLPLQF---SRNGPLCP---ACTKATLRAEYSDKTLYTQ 1398

Query: 1454 LTYFCHLLDTQRGIEKM 1470
            L ++ ++ D    +EK+
Sbjct: 1399 LCFYRYIFDVDCALEKL 1415


>gi|344288735|ref|XP_003416102.1| PREDICTED: DNA polymerase alpha catalytic subunit [Loxodonta
            africana]
          Length = 1461

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1566 (35%), Positives = 826/1566 (52%), Gaps = 183/1566 (11%)

Query: 8    VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            V  R R        R EALERLK       ++G+   Y I+    +Y+ V ED+Y  LV 
Sbjct: 17   VISRSRREKKSKKGRQEALERLKR-----AKAGEKYKYEIEDFASVYEEVDEDQYSKLVQ 71

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN 127
             R+++    IVDDDG+GY ++G+E                 D   +       ++GK   
Sbjct: 72   ARQDDDW--IVDDDGIGYVEDGRE---------------IFDDDLADDALDSSQKGK--- 111

Query: 128  NQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEA 187
            +    K +      AA+     + +M  ++A  KKS D+ V  S+  +   L +    E 
Sbjct: 112  DNKAPKKDKKNIKKAAVTKPNNIKSMFIASAG-KKSADKAVDLSKDDLLGDLLQDLSSEK 170

Query: 188  DR--------ERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNC 239
             R         +++RS+ +++  F    SV T   + +  T       +  +  VQ++  
Sbjct: 171  SRITLPPVMIPKKKRSIGASLNPF----SVHTPKAVPSGKTVLPVSRREPPSTPVQLKCA 226

Query: 240  DVVEESKEL--KWESDNSTELTKRD-NFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPL 296
            +   E+ +     + D S  +   D +F E  E   +EV  +    K  N K    KD  
Sbjct: 227  EFTGETVQAARTGDEDKSGAMDFEDGDFDEPMEA--EEVTVETVTDKTWNQKSEPAKDVK 284

Query: 297  LSATAGWK----------EVSGGNMVLDEG-KSGLNCQESEFE---------VDDDGSLP 336
            L A +G +          +VSG    +D+G +S  + QE + +          D++ +  
Sbjct: 285  LKADSGRETTAHLGCFLPDVSGWG--IDQGDESRFSPQEVQVDSSYLPMVKGADEEQAFQ 342

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  T+ SCCV+VKN++R +Y +P          
Sbjct: 343  FYWLDAYEDPYN-QPGVVFLFGKVWIESAKTYVSCCVMVKNIERTLYFLPRE-------- 393

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            +K++ +  +   +P+     ++DV      +IA +   +   + IV   ++ YAF   ++
Sbjct: 394  LKIDLNTGKETGTPVT----MKDVYDEFDEKIATKYKLMKFKSKIV---EKNYAFEIPDV 446

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +    
Sbjct: 447  PEKSEY-LEVRYSAESPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQ 505

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                P  VSWCK E     P+ + V    K VA  PP+ V + ++KT+ + +   NEI++
Sbjct: 506  LLNQP--VSWCKVETMALKPELVNVI---KDVAP-PPLVVMSFSMKTMQHAKTHQNEIIA 559

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             +V+  H   +D         +P   SHF VV K    IFP+ F +    +N K      
Sbjct: 560  MAVLVHHSFALDKAP-----PQPPFQSHFCVVSKPMDCIFPLAFQEVIKKKNVKVE---- 610

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D DV+VGHNI GFDL VLL R  VC+VP   WSKIGRLKR
Sbjct: 611  -VAATERTLLGFFLAKVHKIDPDVIVGHNIYGFDLQVLLQRINVCKVPH--WSKIGRLKR 667

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
              MPKL       GS +  G  +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 668  FNMPKL-------GSRSGFGERNATCGRMICDVEVSAKELIRCKSYHLSELVQQILKTER 720

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 721  VVIPMENVQNMYSESSRLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNVMSRTL 780

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D
Sbjct: 781  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEID 824

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
             DTS   ++KG++  AY+GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 825  GDTSK--YKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 882

Query: 934  -------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                   + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 883  ASEAQKITEDGEQEQIPELPDPSLEIGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQY 942

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 943  DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYG 1001

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+
Sbjct: 1002 DTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVE 1061

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG  +   E KGLD VRRDW  L+K+ G+F + QILS+++ + +VE+I   L+++ E
Sbjct: 1062 PTSDGNYFIKQELKGLDTVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIEIGE 1121

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++ SG++ + ++ I K LTK P+ YPD KN PHV VAL +   G       GDTV YIIC
Sbjct: 1122 NVLSGRIPVSQFEINKALTKDPQDYPDKKNLPHVHVALWINSQG-GRKMKPGDTVSYIIC 1180

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++   QRA  P++L+K DG   ID  YY +QQ+HPVV+R+C  I+G     
Sbjct: 1181 -----QDGSNLTANQRAYAPEQLQKQDG-LTIDTQYYLAQQVHPVVARICEPIDGIDAVL 1234

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFD 1335
            +A  LGLDP++F+    +    D  ++ L      + DEE+YR CE     CP+C +   
Sbjct: 1235 IATWLGLDPTQFRV---QHYHKDEENAALLGGPAQLTDEEKYRDCERFKCPCPTCGTENI 1291

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
               V            S  + E + +R   + C   P            ++N++      
Sbjct: 1292 YDGVFDG---------SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRR 1336

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
             +  YY G ++C+++TC+  T  L L+    +  G +C     C    +R +Y++  LY 
Sbjct: 1337 CIKKYYDGWLICEEQTCQNRTRHLPLQF---SRNGPLC---QACMKATLRPEYSDKSLYT 1390

Query: 1453 QLTYFCHLLDTQRGIEKMEIS-AKIPLEKELN-KIRPVVALAASTVQRIRERCAYGWVKL 1510
            QL ++ ++ D    +EK+     K  L+K L  K+        +T Q+   R  Y  V L
Sbjct: 1391 QLCFYRYIFDVDCALEKLITDHEKEKLKKFLTPKVLQDYGKLKNTAQQFLSRSGYSEVNL 1450

Query: 1511 NDIAIS 1516
            + +  S
Sbjct: 1451 SKLFAS 1456


>gi|345806837|ref|XP_537985.3| PREDICTED: DNA polymerase alpha catalytic subunit [Canis lupus
            familiaris]
          Length = 1461

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1567 (34%), Positives = 819/1567 (52%), Gaps = 177/1567 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVSSRSRREKKSKRGRQEALERLKRAK-----AGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARTKDRRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  VKKAA------VTKPNNIKSMFIASAGKK------TTDKAVDLSKDDLLGDILQDLNTEK 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKEN---------SDLI 230
                P      +++RS+ +++  F SV++ K      T S  S KE          ++  
Sbjct: 171  PPVTPPPIMIPKKKRSIGASLNPF-SVHTPKAVPSGKTASPVSRKEPPLTPVPVKCAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNF----VEVKE-KVKDEVNEDVKECKKL 285
               V     D  E+S  + +E  +  E  + +      V VK    + E  E VK     
Sbjct: 230  GEPVPALCIDDKEDSGAMDFEDGDFDEPMEAEEVDVEPVAVKTWHQESEPAEGVKYEADP 289

Query: 286  NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
                ++     L   + W        +  E  S  + QE + +          D++    
Sbjct: 290  GKGTTSYLGSFLPDVSCWD-------IDQEDDSSFSAQEVQVDSSHLPLVKGTDEEQVFH 342

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E    +  G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          
Sbjct: 343  FYWLDAYED-QYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPRE-------- 393

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ +  +   + +     ++DV      +IA +     +  +   PV++ YAF   ++
Sbjct: 394  MKIDLNTGKETETLVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNYAFEIPDV 446

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LE+FL+ RK+KGP WL +    
Sbjct: 447  PEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCWLEVKNPQ 505

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                P  VSWCK E     P  + V    K +   PP+ V + ++KT+ N +   +EI++
Sbjct: 506  LLNQP--VSWCKVEAMALKPDLVNVI---KDIGP-PPLVVMSFSMKTMQNAKTHQHEIIA 559

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         +P   SHF VV K    IFP  F     ++N K      
Sbjct: 560  VAALVHHSFALDKAA-----PQPPFQSHFCVVSKPKDCIFPYTFKDYIKEKNVKVE---- 610

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKR
Sbjct: 611  -IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKR 667

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 668  SNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTER 720

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 721  VVIPMENVRNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTL 780

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D
Sbjct: 781  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEELD 824

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
             D   N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 825  GDA--NKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 882

Query: 934  -------SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                   + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 883  ASETQKVTEDGEQEQIPELPDPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQY 942

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 943  DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYG 1001

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   D+ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKY A+ V+
Sbjct: 1002 DTDSIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVE 1061

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+KE G+F + QILS++S + +VE+I   L+++ E
Sbjct: 1062 PTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGE 1121

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC
Sbjct: 1122 NVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQG-GRKMKAGDTVSYVIC 1180

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     
Sbjct: 1181 -----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVL 1234

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDC 1336
            +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +    
Sbjct: 1235 IATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT---- 1288

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGF 1394
                 +I  SV +  S  + E + +R   + C   P        S   ++N++       
Sbjct: 1289 ----ENIYDSVLDG-SGTDVEPSLYRCSNIDCKASP------LTSVVQLSNKLIMDIRRC 1337

Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQL 1454
            +  YY+G ++C++ TC+  T  L L+   +     VC         L  +Y++  LY QL
Sbjct: 1338 IKKYYEGWLICEEPTCQNRTRRLPLQFSRNGPLCQVC-----MKATLRPEYSDKSLYTQL 1392

Query: 1455 TYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA--------STVQRIRERCAYG 1506
             ++ ++ D    +EK+        ++E +K++ V  L          +T ++   R  Y 
Sbjct: 1393 CFYRYIFDVDCALEKLST------DQEKDKLKKVFTLKVRQDYQKLRNTAEQFLSRSGYS 1446

Query: 1507 WVKLNDI 1513
             V L+ +
Sbjct: 1447 EVNLSKL 1453


>gi|301782577|ref|XP_002926706.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Ailuropoda
            melanoleuca]
          Length = 1461

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1517 (35%), Positives = 792/1517 (52%), Gaps = 165/1517 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRSRREKKSKRGRQEALERLKRAK-----AGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARTKDRRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 123  LKKAA------VTKPNSIKSMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTEK 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RSV ++   F SV++ K      T S  S KE          ++  
Sbjct: 171  PQITPPPVMIPKKKRSVGASPNPF-SVHTPKAVPSGKTASPVSRKEPPLTSVPLKRAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNF----VEVKE-KVKDEVNEDVKECKKL 285
               V     D  E+S  + +E  +  E  + +      V VK    + E  E VK     
Sbjct: 230  GEPVPALCIDDKEDSGAMDFEDGDFDEPMEAEEVDVEPVAVKTWHQESEPAEGVKHEADP 289

Query: 286  NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
                ++     L   + W        V  E  S  + QE + +          D++    
Sbjct: 290  GKGTTSYLGSFLPDVSCWD-------VDREDDSSFSAQEVQVDSSHLPLVKGTDEEQVFQ 342

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCC++VKN++R +Y +P          
Sbjct: 343  FYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCLMVKNIERTLYFLPRE-------- 393

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             K++ +  +   +P+     ++DV      +IA +     +  +   PV++ YAF   ++
Sbjct: 394  TKIDLNTGKETETPVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNYAFEIPDV 446

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LE+FL+ RK++GP WL +    
Sbjct: 447  PEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIRGPCWLEVKNPQ 505

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                P  VSWCK E     P  + V    K V   PP+ V + ++KT+ N +   NEI++
Sbjct: 506  LLNHP--VSWCKVEAMALKPDLVNVI---KDVGP-PPLVVMSFSMKTMQNAKTHQNEIIA 559

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         +P   SHF VV K    IFP  F ++  +RN K      
Sbjct: 560  VAALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYTFKEDIKERNVKVE---- 610

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKR
Sbjct: 611  -IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKR 667

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 668  SNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTER 720

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
             E+   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 721  FEIPMENVRNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTL 780

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K  +                          
Sbjct: 781  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDID---------------- 824

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
                 N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 825  --GDANKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 882

Query: 934  -------SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                   + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 883  ASETQKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQY 942

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 943  DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYG 1001

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   D+ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKY A+ V+
Sbjct: 1002 DTDSIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVE 1061

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+KE G+F + QILS++S + +VE+I   L+++ E
Sbjct: 1062 PTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGE 1121

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC
Sbjct: 1122 NVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQG-GRKVKAGDTVSYVIC 1180

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     
Sbjct: 1181 -----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVL 1234

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFD 1335
            +A  LGLDP++F+         D  +  L      + DEE+YR CE     CP+C +   
Sbjct: 1235 IATWLGLDPTQFR---VHHYHKDEENDALLGGPAQLTDEEKYRDCEKFKCPCPTCGT--- 1288

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
                  +I  SV +  S  + E + +R   + C   P            ++N++      
Sbjct: 1289 -----ENIYDSVLDG-SGTDMEPSLYRCSNIDCKASPLTFMV------QLSNKLIMDMRR 1336

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             +  YY+G ++C++ TC+  T  L L+   +     VC         L  +Y++  LY Q
Sbjct: 1337 CIKKYYEGWLICEEPTCRNRTRRLPLQFSRNGPLCQVC-----VKATLRPEYSDKSLYTQ 1391

Query: 1454 LTYFCHLLDTQRGIEKM 1470
            L ++ ++ D    +EK+
Sbjct: 1392 LCFYRYIFDADCALEKL 1408


>gi|281350001|gb|EFB25585.1| hypothetical protein PANDA_016394 [Ailuropoda melanoleuca]
          Length = 1459

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1516 (35%), Positives = 794/1516 (52%), Gaps = 163/1516 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 9    VSDSGSFVASRSRREKKSKRGRQEALERLKRAK-----AGEKYKYEVEDFTSVYEEVDEE 63

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 64   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARTKDRRN 121

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 122  LKKAA------VTKPNSIKSMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTEK 169

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             +  P      +++RSV ++   F SV++ K      T S  S KE          ++  
Sbjct: 170  PQITPPPVMIPKKKRSVGASPNPF-SVHTPKAVPSGKTASPVSRKEPPLTSVPLKRAEFA 228

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNF----VEVKE-KVKDEVNEDVKECKKL 285
               V     D  E+S  + +E  +  E  + +      V VK    + E  E VK     
Sbjct: 229  GEPVPALCIDDKEDSGAMDFEDGDFDEPMEAEEVDVEPVAVKTWHQESEPAEGVKHEADP 288

Query: 286  NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
                ++     L   + W        V  E  S  + QE + +          D++    
Sbjct: 289  GKGTTSYLGSFLPDVSCWD-------VDREDDSSFSAQEVQVDSSHLPLVKGTDEEQVFQ 341

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCC++VKN++R +Y +P          
Sbjct: 342  FYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCLMVKNIERTLYFLPRE-------- 392

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             K++ +  +   +P+     ++DV      +IA +     +  +   PV++ YAF   ++
Sbjct: 393  TKIDLNTGKETETPVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNYAFEIPDV 445

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LE+FL+ RK++GP WL +    
Sbjct: 446  PEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIRGPCWLEVKNPQ 504

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                P  VSWCK E     P  + V    K V   PP+ V + ++KT+ N +   NEI++
Sbjct: 505  LLNHP--VSWCKVEAMALKPDLVNVI---KDVGP-PPLVVMSFSMKTMQNAKTHQNEIIA 558

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         +P   SHF VV K    IFP  F ++  +RN K      
Sbjct: 559  VAALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYTFKEDIKERNVKVE---- 609

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKR
Sbjct: 610  -IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKR 666

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 667  SNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTER 719

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
             E+   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 720  FEIPMENVRNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTL 779

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K  +                          
Sbjct: 780  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDID---------------- 823

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
                 N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 824  --GDANKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 881

Query: 934  -------SPDG---LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                   + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 882  ASETQKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQY 941

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 942  DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYG 1000

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   D+ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKY A+ V+
Sbjct: 1001 DTDSIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVE 1060

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+KE G+F + QILS++S + +VE+I   L+++ E
Sbjct: 1061 PTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGE 1120

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC
Sbjct: 1121 NVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQG-GRKVKAGDTVSYVIC 1179

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     
Sbjct: 1180 -----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVL 1233

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDC 1336
            +A  LGLDP++F+         + + +LL     + DEE+YR CE     CP+C +    
Sbjct: 1234 IATWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCEKFKCPCPTCGT---- 1287

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGF 1394
                 +I  SV +  S  + E + +R   + C   P            ++N++       
Sbjct: 1288 ----ENIYDSVLDG-SGTDMEPSLYRCSNIDCKASPLTFMV------QLSNKLIMDMRRC 1336

Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQL 1454
            +  YY+G ++C++ TC+  T  L L+   +     VC         L  +Y++  LY QL
Sbjct: 1337 IKKYYEGWLICEEPTCRNRTRRLPLQFSRNGPLCQVC-----VKATLRPEYSDKSLYTQL 1391

Query: 1455 TYFCHLLDTQRGIEKM 1470
             ++ ++ D    +EK+
Sbjct: 1392 CFYRYIFDADCALEKL 1407


>gi|395838110|ref|XP_003791967.1| PREDICTED: DNA polymerase alpha catalytic subunit [Otolemur
            garnettii]
          Length = 1461

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1518 (34%), Positives = 804/1518 (52%), Gaps = 168/1518 (11%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKFKYEVEDFASVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +        ++  +G+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDAFDVSEKGKNGRARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+ K      V KPN   +   A  GK+      T+      SKD+ +      ++   
Sbjct: 123  VKKPK------VTKPNNIKSMFIACAGKK------TADKGVDLSKDDLLGNILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENS---------DLI 230
             +  P      +++RS  +++  F SV++ K      T S+ S KE           +  
Sbjct: 171  PQITPPPVMVLQKKRSTGTSLNPF-SVHTPKAVPSGKTGSSISRKEPPLTPVPLKCPEFS 229

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKV------KDEVNEDVKECKK 284
               VQ ++ +  ++S  +++E  +  E  + +  V+V+         K E  E VK  + 
Sbjct: 230  GEMVQEEHKEDKQDSGAMEFEDGDFDEPMEAEE-VDVEPVAAKTWDQKSEPAERVKHEEG 288

Query: 285  LNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSL 335
            L    ++     L   + W        +  E  +  + QE + +          D++   
Sbjct: 289  LGKGTTSCLGSFLPDVSCWD-------IDQEDDNSFSAQEVQVDSSYLPLVKGADEEQVF 341

Query: 336  PFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
             FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P         
Sbjct: 342  QFYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPRE------- 393

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
              K++++  +   +P+A    ++DV      +IA +   +   + IV   ++ YAF   +
Sbjct: 394  -TKIDRNTGKETGTPVA----IKDVYDEFDEKIAAKYKIMKFKSKIV---EKNYAFEIPD 445

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            +P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   
Sbjct: 446  VPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMSRKIKGPCWLEVKNP 504

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
                 P  +SWCK E     P  + V          PP+ V + ++KT+ + +   N I+
Sbjct: 505  QLLNQP--ISWCKVEAMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQDAKDHQNVII 558

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
            + + +  H   +D         +P   SHF VV K    IFP  F +    +N K     
Sbjct: 559  AIAALVHHNFALDKAP-----PQPPFQSHFCVVSKPMDCIFPYAFKEVIEKKNMK----- 608

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            +   ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  V +VP   WSKIGRLK
Sbjct: 609  IEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVGKVP--YWSKIGRLK 666

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            R  MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +
Sbjct: 667  RCNMPKL-GGRSGFGE------RNATCGRIICDVEISAKELIRCKSYHLSELVQQILKTE 719

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +T
Sbjct: 720  RVVIPMENIRNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRT 779

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   
Sbjct: 780  LMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPP----------------QKLGDEDEEI 823

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
            D DT +   +KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R
Sbjct: 824  DGDTKY---KKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQR 880

Query: 934  SP-----------DGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQ 979
                            +P LP      G+LP  ++ LV+RR+ V+  MK    +   + Q
Sbjct: 881  VALEAKKATEDVEQEQIPELPDPGLEMGILPREIRKLVERRKQVRQLMKQQDLNPDLLLQ 940

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIY
Sbjct: 941  YDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIY 999

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V
Sbjct: 1000 GDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVV 1059

Query: 1100 Q-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG  +   E KGLD++RRDW  L+K+ G+F + QILS++S + +VESI   LM++ 
Sbjct: 1060 EPTSDGNYFTKQELKGLDIIRRDWCDLAKDTGNFVIGQILSDQSRDTIVESIQKRLMEIG 1119

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+I
Sbjct: 1120 ENVLNGCVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKMKAGDTVSYVI 1178

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C       GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G    
Sbjct: 1179 C-----QDGSNLSANQRAYAPEQLQKQDS-LTIDTQYYLAQQIHPVVARICEPIDGIDSV 1232

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFD 1335
             +A  LGLDP++F  K  +    + + +LL     + DEE+YR CE     CP+C +   
Sbjct: 1233 LIATWLGLDPTQF--KVHDYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGTENI 1290

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
               V   +           E E + +R   + C   P            ++N++      
Sbjct: 1291 YDNVFDGLGT---------EMEPSLYRCSNIECKASPLTFIV------QLSNKLIMDIRR 1335

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
            F+  YY G ++C++ TC+  T  L LR    +  G +C   P C+  ++R +Y++  LY 
Sbjct: 1336 FIKKYYDGWLICEEPTCRNRTRHLPLRF---SRNGPLC---PACSKAILRLEYSDKSLYT 1389

Query: 1453 QLTYFCHLLDTQRGIEKM 1470
            QL ++ ++ D    +EK+
Sbjct: 1390 QLCFYRYIFDVDCALEKL 1407


>gi|62086809|dbj|BAD92011.1| DNA polymerase alpha catalytic subunit [Gallus gallus]
          Length = 1462

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1550 (34%), Positives = 801/1550 (51%), Gaps = 237/1550 (15%)

Query: 38   RSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVA 97
            ++G+ + Y ++    +YD + E++Y  +V  R  +   +IVDDDG+GY ++G+E      
Sbjct: 4    KAGEKLKYEVEEFTGVYDEIDEEQYSKIV--RERQDDDWIVDDDGIGYVEDGRE------ 55

Query: 98   GLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV-RKPNPSLTAAAAMMGKQRLSAMLTS 156
                  DD++L   +  K  +    GKK   ++V  KPN   +   A  GK+       +
Sbjct: 56   IFDEDLDDDALGSSKKGKTGKTSTIGKKNVKKSVVAKPNTIKSMFIASAGKK------NT 109

Query: 157  TAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSF---------VSVN 207
                  SKD+ + +    ++    + +P      +R+RS    +  F         ++  
Sbjct: 110  DKTVDLSKDDLLGDILQDLNAETVQLSPPPILVLKRKRSAGMPLNPFSVQRQSPKVITPV 169

Query: 208  SVKTNSQL-----------------VTNSTNSVKENSDLINNFVQ--IQNCDVVEESKEL 248
            S K   QL                    S  + +EN D    +VQ   +N  VV+  +E 
Sbjct: 170  SKKAPVQLRKEARPPASFHPKHPNYTAKSVTASEENED--TKYVQKATENGRVVKTKEEK 227

Query: 249  KWESDN-------------------------STELTKRDNFVEVKEKVKDEVNEDVKECK 283
              E D+                         + E  KRD  VE KE        +  E K
Sbjct: 228  AIEDDDQGMMDFDDEDFDEPMEAELMGAVPETAETLKRDKEVEKKEM-------EQLESK 280

Query: 284  KLNAKISTEKDPLLSATAGWKEVSG--GNMVLDEGKSGLNCQESEFEVDDDGSLPFYILD 341
            K  A   +   P +S    W +V     ++V  + +   N        +DD  L FY LD
Sbjct: 281  KKEASALSHSLPDISC---WDKVEEDEADLVATDVQLDPNLLPLVNGENDDQVLRFYWLD 337

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            A+E    +  G ++LFGKV  ++ +T+ SCCV VKN++R VY +P               
Sbjct: 338  AYED-QYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVYLLP--------------- 381

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSP-----------VKRRY 447
                        R+   D++ G +TE    ++N     N  +SP           V++ Y
Sbjct: 382  ------------RETEMDLSSGKETETPVTIMNVFKEFNDCISPKYKIMKFKSKKVEKYY 429

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y  + P LP DLKGE F  + GT++S+LEL L+ RK+KGP W
Sbjct: 430  AFEIPDVPAKSEY-LEVKYSAEYPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPCW 488

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   +  P+ Q VSWCK E     P  + V    K +   PP+ V + ++KT+ N + 
Sbjct: 489  LEIK--NPQPSNQSVSWCKVEAVAMKPGLVNVV---KDLLPPPPLVVMSFSMKTIQNPKT 543

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ + +   K  +D         +P   +HF  V K +  IFP  F +E   +N+
Sbjct: 544  HQNEIVAMAALIHQKFPLDKAP-----PQPPFQTHFCAVSKPNDCIFPYDFKEEIKKKNA 598

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K     +   ++ER LL   + +++K+D DV+VGHNI GFDL+VLL R  VC+VP   WS
Sbjct: 599  K-----IEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVPH--WS 651

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR  FG   +    +C  GR++CD  + +++L+R  SY L++L  
Sbjct: 652  KIGRLRRSNMPKL-GGRGGFGERNA----AC--GRMICDVEISAKELIRCKSYHLSELVH 704

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++  ++     L+ ++E   TDA   +++M  L+VLPL  Q+TNISG
Sbjct: 705  QILKTERVTILPEEIRNLYSDSPHLLFMLENTWTDAKFILQIMCELNVLPLALQITNISG 764

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +T+ G R++R E+LLLHAF  K YIVPDK  + K                 +++L 
Sbjct: 765  NVMSRTMMGGRSERNEFLLLHAFYEKDYIVPDKQVFKKP----------------LQKLV 808

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +ED +F++    N  + GK+  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NIC
Sbjct: 809  DEDEDFED---QNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNIC 865

Query: 928  FTTVER-----------SPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS-- 973
            FTTV+R             +  +P LP  S   G+LP+ ++ LV+RRR VK  MK     
Sbjct: 866  FTTVQRLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLN 925

Query: 974  -GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
              L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  
Sbjct: 926  PDLYL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ-K 983

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            +NLEVIYGDTDSIMI++   ++ +   +  K+  EVNK YK LEID+DG++K +LLLKKK
Sbjct: 984  MNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLKKK 1043

Query: 1093 KYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KYAA+ V+   DG      E KGLD+VRRDW  L+KE G++ + QILS++  + +VE+I 
Sbjct: 1044 KYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQPRDIIVENIQ 1103

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
              L+++ E++ +GQ+ + ++ I K LTK P+ YPD K+ PHV VA+ +   G      AG
Sbjct: 1104 RRLIEIGENVINGQIPVNQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQG-GRKVKAG 1162

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            DTV YIIC       GS++  +QRA  P++L+K D    ID  YY SQQIHPVV+R+C  
Sbjct: 1163 DTVSYIIC-----QDGSNLSASQRAYAPEQLQKQDN-LTIDTQYYLSQQIHPVVARICEP 1216

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSC 1327
            IEG     +A  LGLDPS+F+         D  +  L      + DEE+YR CE     C
Sbjct: 1217 IEGIDSVLIATWLGLDPSQFRV--HHHYHKDEENDALVGGPAQLTDEEKYRDCERFKFCC 1274

Query: 1328 PSCSS------TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG 1381
              C +       FDC        +    K    E  +N    +                 
Sbjct: 1275 LKCGTENIYDNVFDCSGRFIEPSLQRCSKSECEEPPFNHVVQMN---------------- 1318

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRL 1441
               N++      ++  YY G ++C+D TC+  T  L L     +  G +C     C   +
Sbjct: 1319 ---NKLLLDIRRYLKKYYNGWLICEDPTCQNRTRRLPLSF---SRSGPIC---QACRKAI 1369

Query: 1442 VR-KYTEADLYKQLTYFCHLLDTQRGIEKM------EISAKIPLEKELNK 1484
            +R +Y++  LY QL ++ ++ D +  ++K+      E   + PL KE+++
Sbjct: 1370 LRPEYSDKALYTQLCFYRYIFDVEYAMDKVITEEDREFVRRKPLRKEVSE 1419


>gi|426256798|ref|XP_004022024.1| PREDICTED: DNA polymerase alpha catalytic subunit [Ovis aries]
          Length = 1462

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1513 (35%), Positives = 815/1513 (53%), Gaps = 157/1513 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D +  VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSRNFVASRSRREKKSKKGRQEALERLKRAK-----AGEKCKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++     VDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 65   QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKACNKDKRT 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             KR        V KPN   +   A  G++      T       SKD+ + +    ++   
Sbjct: 123  VKRAA------VTKPNNIKSMFIANAGRK------TVDKAVDLSKDDLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNC 239
             +  P      +++RS  +++  F SV++ K      T  + S KE S    +    +  
Sbjct: 171  PQITPPPVIIPKKKRSSGASLNPF-SVHTPKAAPSGKTTPSASRKEPSLTPASLTCAEFA 229

Query: 240  ---------DVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIS 290
                     D  EES  +++E  +  E  + +  V+V+      + ++ +  ++   K  
Sbjct: 230  GEPRPPLCTDDKEESGAMEFEDGDFDEPMEAEE-VDVEPVAAKTLCQEREPAEEAKQKAD 288

Query: 291  TEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILD 341
            + K    S+ +   +VS  +M   E  S  +  E + +          D++    FY LD
Sbjct: 289  SGKGTASSSASFLPDVSCWDMD-QEDDSSFSAPEVQVDSSHLPLVKGADEEQVFQFYWLD 347

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            A+E    +  G ++LFGKV  ++  TH SCCV+VKN++R +  +P          MK++ 
Sbjct: 348  AYED-PYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLCFLPRE--------MKVDL 398

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            +  +   +P+     ++DV      +IA +   +   + +V   ++ YAF   ++P    
Sbjct: 399  NTGKESGTPVT----MKDVYDEFDEKIAAKYKIMKFKSKVV---EKNYAFEIPDVPEKSE 451

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +        P
Sbjct: 452  Y-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP 510

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
              +SWCK E  V  P  + V    K V   PPV V ++++KT+ N +   NEI++ S + 
Sbjct: 511  --ISWCKVEAMVLKPDLVNVI---KDVGP-PPVVVMSLSMKTMQNAKTHENEIIAVSALV 564

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
             H   +D         +P   SHF VV K    IFP  F +   ++N K         ++
Sbjct: 565  HHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYDFKESIKEKNVKVE-----VAAT 614

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS MPK
Sbjct: 615  ERTLLGCFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP--FWSKIGRLKRSNMPK 672

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L  GR+ FG   +    +C  GR++CD  + +++L+R  SY L++L +  L  +R  +  
Sbjct: 673  L-GGRSGFGEKNA----TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPI 725

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R+
Sbjct: 726  ENIRNMYSDSSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRS 785

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            +R E+LLLHAF    YIVPDK T+ K                  ++L +ED + D DT  
Sbjct: 786  ERNEFLLLHAFYENNYIVPDKQTFRKPQ----------------QKLGDEDEDIDGDT-- 827

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP---- 935
            N ++KG++  AY+GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R      
Sbjct: 828  NKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 887

Query: 936  ----DG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQ 984
                DG    +P LP  S   G+LP  ++ LV+RRR VK  MK       L + Q DI+Q
Sbjct: 888  KVVEDGEQEQIPELPDPSLEMGILPREIRKLVERRRQVKQLMKQQDLNPDLHL-QYDIRQ 946

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 947  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDS 1005

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1006 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALIVEPTSD 1065

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS+++ + +VE+I   L+++ E++ +
Sbjct: 1066 GNYVTKQEVKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIEIGENVLN 1125

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1126 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1180

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1181 -QDGSNLTAGQRAYAPEQLQKQDN-LSIDTQYYLAQQIHPVVARICEPIDGIDAILIASW 1238

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPAV 1339
            LGLDP++F+         D  +  L      + DEE+Y+ CE     CP+C +       
Sbjct: 1239 LGLDPTQFR---VHHYHKDEENDALLGGPAHLTDEEKYKDCERFKCPCPTCGT------- 1288

Query: 1340 CSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
              +I  SV +  S  + E + +R   + C   P            ++N++       +  
Sbjct: 1289 -ENIYDSVFDG-SGTDMEPSLYRCSNINCKASPLTFMV------QLSNKLIMDIRRCIKK 1340

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            YY+G ++C++ TC+  T  L L+    +  G +C    +   RL  +Y++  LY QL ++
Sbjct: 1341 YYEGWLICEEPTCRNRTRHLPLQF---SRNGPLCQVCMKATLRL--EYSDKSLYTQLCFY 1395

Query: 1458 CHLLDTQRGIEKM 1470
             ++ D +  +EK+
Sbjct: 1396 RYIFDVECALEKL 1408


>gi|32329591|gb|AAP45773.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1610 (32%), Positives = 822/1610 (51%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELKWESDNSTELTKRDN--FVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   V +E +EL       T + +  N  + + K ++  + + + 
Sbjct: 225  QNANVFSKKRKLDEIQQPQVKKEHQELNKSRQTETIIHQSSNTSYFDAKSQLSHDQSMEY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIYQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIXHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+VRK
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVRK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK L
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQL 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYNKVDLGSI 1504


>gi|62086805|dbj|BAD92009.1| DNA polymerase alpha catalytic subunit [Iguana iguana]
          Length = 1441

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1494 (35%), Positives = 793/1494 (53%), Gaps = 193/1494 (12%)

Query: 53   IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE--EDWSVAGLPSSSDDESLDG 110
            +YD + E++Y  +V  R+E+   +IVDDDG+GY ++G+E  ++     +  S+     D 
Sbjct: 4    VYDEIDEEQYSKIVRERQED--DWIVDDDGVGYVEDGREIFDEDLEDDVLDSNKKRKRDS 61

Query: 111  QRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAM---------------LT 155
              + +K+ ++K         V KPN   +   A  GK+                    L 
Sbjct: 62   ASTKEKKNVKKTL-------VSKPNTIKSMFMANTGKKNTDKTVDLSKDDLLGDILQDLN 114

Query: 156  STAMFKKSKDEKVKESESVIDEVLAEFA-PDEADRERR-----RRSVSSNIKSFVSVNSV 209
            + ++        V + + +    L  F+   +A   +R     +++V+S+ K   +VNS 
Sbjct: 115  AESVHIAPPPVPVLKKKRIFGTPLNPFSLQSQAATSKRFSSVVQKTVTSDKKETFTVNSS 174

Query: 210  KTNSQLVTNSTNSVKENSDLINN---------FVQIQNCDVVEESKE---LKWESDNSTE 257
             +   +   ++ +VKE S    N          ++++  D+ +E ++      + D    
Sbjct: 175  HSKHAVFPATSEAVKEKSLTPENEADPAENGVLLKMKQEDITKEDEQAMMDFDDGDFDVS 234

Query: 258  LTKRDNFVEVKEKVKDEVN-EDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEG 316
            + +    VE    VK+EV  ED +E        S   +  L     W ++       DE 
Sbjct: 235  MEEDRTVVEAVTSVKEEVKLEDRQE--DFEKTGSHFLNSSLPEIFCWDKI-------DED 285

Query: 317  KSGLNCQESEFEVDD---------DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAG 363
            + G     SE +VD          DG     FY LDA+E       G ++LFGKV  ++ 
Sbjct: 286  EIG--HLASEIQVDSSQLPLITGADGQQIFRFYWLDAYEDQYN-QPGVVFLFGKVWIESA 342

Query: 364  STHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLK 423
             ++ SCCV VKN++R +Y +P     +   I K      E+ ++ M       DV     
Sbjct: 343  KSYVSCCVTVKNIERTIYLLP-----RESRIDKCSGKETENPVTMM-------DVYQEFN 390

Query: 424  TEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFC 483
              +A +     +  Y    V++ YAF   ++PA  +Y L++ Y  +   LP DLKGE F 
Sbjct: 391  DHVAEKF---KIMKYKSKKVEKNYAFEIPDVPAKSDY-LEVRYSAEYSRLPQDLKGETFS 446

Query: 484  SLLGTHSSALELFLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSS 541
             + GT++S+LEL L+ RK+KGP WL I   + SS    Q VSWCK E+    P  + V  
Sbjct: 447  HVFGTNTSSLELLLMNRKIKGPGWLEIKNPQLSS----QAVSWCKVELVALKPAFVNVVK 502

Query: 542  SSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID-TPMLASEWKKPGML 600
                    PP+ + ++++KTV N +   NEI+  + +  HK  +D  P +      P   
Sbjct: 503  D----LPPPPLVIMSLSMKTVQNTKTHQNEIMVITALVHHKFCLDKAPPV------PPFQ 552

Query: 601  SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLV 660
            +HF V+ K +  IFP  F +    +N+K     +   ++ER LL   + +++K+D DV+V
Sbjct: 553  THFCVISKPNDCIFPYDFKEIVKTKNAK-----IEIATTERTLLGFFLAKVHKIDPDVIV 607

Query: 661  GHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA 720
            GHNI GFDL++LL R   C+VP   WSKIGRL+RS MPKL  GR+ F    +    +C  
Sbjct: 608  GHNIYGFDLELLLQRINFCKVPH--WSKIGRLRRSNMPKL-GGRSGFAEKNA----TC-- 658

Query: 721  GRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE 780
            GR++CD  + +++L+R  SY LT+L    L  +R  V P ++  M+     L+ ++E   
Sbjct: 659  GRMICDVEISAKELIRCKSYHLTELVNQILKVERITVPPEEIRNMYSDPRQLLYMVENTW 718

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
            TDA   +++M  L+VLPL  Q+TNI+GN+  +TL G RA+R EYLLLHAF  K +IVPDK
Sbjct: 719  TDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAERNEYLLLHAFYEKNFIVPDK 778

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
              + K  K  +                 ED +F+ D   N  + G++  AY+GGLVLEPK
Sbjct: 779  QLFKKTQKQLE-----------------EDEDFEGD--QNKSKTGRKKAAYSGGLVLEPK 819

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH-----------LP-SSKTT 948
             G YDK+ILLLDFNSLYPSIIQE+NICFTTV R    L  +           LP SS   
Sbjct: 820  VGFYDKFILLLDFNSLYPSIIQEFNICFTTVHRVSSSLHKNTEDGEEEEIPELPDSSLDM 879

Query: 949  GVLPELLKNLVQRRRMVKTWMKTA---SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
            G+LP+ ++ LV+RRR VK  MK     S L + Q DI+Q+ALKLTANSMYGCLGFS SRF
Sbjct: 880  GILPKEIRKLVERRRQVKQLMKQPDLNSDLYL-QYDIRQKALKLTANSMYGCLGFSYSRF 938

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            YAKPLA L+T +GREIL  T ++V+  +NLEVIYGDTDSIMI++ I ++ +   +  K+ 
Sbjct: 939  YAKPLAALVTFKGREILMHTKEMVE-KMNLEVIYGDTDSIMINTNITNLEEVFKLGNKIK 997

Query: 1066 QEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSL 1124
             EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG      E KGLD+VRRDW  
Sbjct: 998  SEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTGDGKYITKQELKGLDIVRRDWCD 1057

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L+KE G++ +SQILS++  + +VE+I   L+++ E++ +G V ++++ I K LTK P+ Y
Sbjct: 1058 LAKETGNYIISQILSDQFRDVIVENIQRRLIQIGENVVNGSVPIKQFEINKALTKDPQDY 1117

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
            PD K+ PHV VAL +  S       AGDTV Y+IC       GS++  +QRA  P++LKK
Sbjct: 1118 PDKKSLPHVHVALWI-NSQEGRKLKAGDTVSYVIC-----QDGSNLSASQRAYAPEQLKK 1171

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
             +    ID  YY SQQIHPVV+R+C  I+G     +A  LGLDPS+F  K       D  
Sbjct: 1172 QEN-LAIDTQYYLSQQIHPVVARICEPIDGIDSVLIAAWLGLDPSQF--KVYHHYHKDEE 1228

Query: 1305 SSLLFA----VGDEERYRGCEPLILSCPSCSS--TFDCPAVCSSICMSVS-EKPSKPETE 1357
            +  L      + DEE+Y+ CE    +CP C +   +D     S + +  S    SK E  
Sbjct: 1229 NDDLLGGPVQLTDEEKYKDCERFKFACPKCGTENIYDNVVNGSDMMIEASLLYCSKKECN 1288

Query: 1358 YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSL 1417
             + W+ L                  I N++      ++  YY   + C++ TC+Y T  L
Sbjct: 1289 ESPWKYLM----------------QINNRLILDIRSYIKKYYTSWLRCEEPTCQYRTRRL 1332

Query: 1418 NLRLIGDAERGTVCPNYPRCNGRLV-RKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
             LR    ++ G +C   P C   +V R+Y++  L+ QL ++ ++ D     +K+
Sbjct: 1333 PLRF---SKNGPLC---PVCKKAVVKREYSDKVLFTQLCFYRYIFDVDYAKQKL 1380


>gi|32329597|gb|AAP45776.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1610 (32%), Positives = 822/1610 (51%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELKWESDNSTELTKRDN--FVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   V +E +EL       T + +  N  + + K ++  + + + 
Sbjct: 225  QNANVFSKKRKLDEIQQPQVKKEHQELNKSRQTETIIHQSSNTSYFDAKSQLSHDQSMEY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIFQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+VRK
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVRK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQYKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK L
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQL 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYNKVDLGSI 1504


>gi|32329595|gb|AAP45775.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1610 (32%), Positives = 824/1610 (51%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELK--WESDNSTELTKRDNFVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   V +E +EL    +++N    +   ++ + K ++  + + + 
Sbjct: 225  QNANVFSKKRKLDEIQQPQVKKEHQELNKSRQTENIIHQSSNTSYFDAKSQLSHDQSMEY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIYQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+VRK
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVRK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIXDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK L
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQL 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------AKVDELMNRSKYNKVDLGSI 1504


>gi|32329593|gb|AAP45774.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1610 (32%), Positives = 821/1610 (50%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELKWESDNSTELTKRDN--FVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   V +E +EL       T + +  N  + + K ++  + + D 
Sbjct: 225  QNANVFSKKRKLDEIQQPQVKKEHQELNKSRQTETIIHQSSNTSYFDAKSQLSHDQSMDY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYXIDAHEENNGAD---LFIFGKIFQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREDENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +++PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIENPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+VRK
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVRK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +        VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVXVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK L
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQL 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYNKVDLGSI 1504


>gi|354492237|ref|XP_003508256.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2
            [Cricetulus griseus]
          Length = 1462

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1564 (34%), Positives = 814/1564 (52%), Gaps = 169/1564 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++     VDDDG GY ++G+E    +       D     G+ S  K   +
Sbjct: 65   QYSKLVQARQDDDWI--VDDDGTGYVEDGRE----IFDDDLEDDALDTSGKGSDGKAHRK 118

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
             R K     +V KPN       A  GK+      T+      SKD+ + +    ++  ++
Sbjct: 119  DR-KDVKKPSVTKPNNIKAMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTDVS 171

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLIN 231
            + AP      +++RS  + +  F SV+S K        S    KE          ++   
Sbjct: 172  QIAPPPVLIPKKKRSSGTLLNPF-SVHSPKAIPPGKPASPVLRKEPLLTPIPIKRAEFAG 230

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRDNF--VEVKEKVKDEVNEDVKECKKLNAKI 289
               Q +  +  +ES  +++E  +  E  + +      V  +  D+ +E          ++
Sbjct: 231  ELSQPECPEDEQESGIMEFEDGDFDEPMEAEEVDGEPVTARTWDQESEP-------EERV 283

Query: 290  STEKDPLLSATAGWK----EVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
              E DP    T+  +    +VS  +M   E +S    QE + +          DD+    
Sbjct: 284  KHETDPKKGTTSFLESFLPDVSCWDMD-QEDESSFLVQEVQVDSTHLPLVKGADDEQVFQ 342

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          
Sbjct: 343  FYWLDAYEDPYN-QPGVVFLFGKVWVESAQTHVSCCVMVKNIERTLYFLPRE-------- 393

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ +  +   +P+     + DV     + IA +     +  +    V++ YAF   ++
Sbjct: 394  MKIDLNTGKETTTPVT----MMDVYEEFDSTIAAKY---KIMKFKSKTVEKNYAFEIPDV 446

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + PPLP  LKGE F  + GT++S LELFL+ RK+KGP WL +   +
Sbjct: 447  PEKSEY-LEVRYSAEMPPLPQHLKGETFSHVFGTNTSGLELFLMNRKIKGPCWLEVK--N 503

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
              P  Q +SWCK+E     P  + V          PP+ V + ++KT+ N +   +EI++
Sbjct: 504  PQPLKQPISWCKFEAVALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNIKNHQHEIIA 559

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         KP   +HF VV K    IFP  F +    +N K      
Sbjct: 560  IAALVHHSFALDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMKVE---- 610

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D+LVGHNI GF+L+VLL R  VC+VP   WSKIGRL+R
Sbjct: 611  -VAATERTLLGFFLAKVHKIDPDILVGHNICGFELEVLLQRINVCKVP--YWSKIGRLRR 667

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL       GS +  G  +   GR++CD  + +++L+   SY L++L +  L  +R
Sbjct: 668  SNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTER 720

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   ++  M+     L+ L+E    DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 721  IVIPTENIQNMYSESSHLLYLLEQIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTL 780

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D
Sbjct: 781  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEVD 824

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
             DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 825  GDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 882

Query: 934  -----------SPDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQ 979
                            +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q
Sbjct: 883  ALEVQNSTTEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ 942

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIY
Sbjct: 943  YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIY 1001

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V
Sbjct: 1002 GDTDSIMINTNSTNLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVV 1061

Query: 1100 Q-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ 
Sbjct: 1062 EPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIG 1121

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E++ +G + + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+I
Sbjct: 1122 ENVLNGSIPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVI 1180

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C       GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G    
Sbjct: 1181 C-----QDGSNLTATQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAV 1234

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFD 1335
             +A  LGLD ++F+    +    + + +LL     + DEE+Y+ CE     CP+C +   
Sbjct: 1235 LIALWLGLDSTQFRV--HQYHKDEETDALLGGPAQLTDEEKYKDCEKFKCPCPTCGT--- 1289

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
                  +I  +V E  S  + E + +R   + C   P            ++N++      
Sbjct: 1290 -----ENIYDNVFEG-SGIDLEPSLYRCSNVDCKASPLTFMV------QLSNKLTMDIRH 1337

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
             +  YY G ++C++ TC+  T  L L     +  G +C   P C   ++R +Y++  LY 
Sbjct: 1338 CIKKYYDGWLICEEPTCRSRTRRLPLHF---SRNGPLC---PVCMKAVLRPEYSDKSLYT 1391

Query: 1453 QLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
            QL ++ ++ D    +EK+    K  L+K+     P V      ++ I E     W   ++
Sbjct: 1392 QLCFYRYIFDVDCALEKLTEHEKDKLKKQF--FTPKVLHDYKKIKNIAEH-FLSWSGYSE 1448

Query: 1513 IAIS 1516
            + +S
Sbjct: 1449 VNLS 1452


>gi|32329589|gb|AAP45772.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1610 (32%), Positives = 821/1610 (50%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELKWESDNSTELTKRDN--FVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   V +E +EL       T + +  N  + + K ++  + + + 
Sbjct: 225  QNANVFSKKRKLDEIQQPQVKKEHQELNKSRQTETIIHQSSNTSYFDAKSQLSHDQSMEY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIYQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+VRK
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVRK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNXCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK L
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQL 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------TKVDXLMNRSKYNKVDLGSI 1504


>gi|395331917|gb|EJF64297.1| DNA polymerase alpha catalytic subunit [Dichomitus squalens LYAD-421
            SS1]
          Length = 1462

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1209 (38%), Positives = 670/1209 (55%), Gaps = 124/1209 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNG 386
            +++DGSL FY LD  E     + G LY  GK +   T    S CV V+N++R ++ +P  
Sbjct: 344  LEEDGSLRFYWLDYLE-----HDGRLYFIGKTQDKKTKVWVSICVTVENLERNLFVLPRE 398

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               + DE      +  E+ + P      L D+     ++         +  +    VKR+
Sbjct: 399  RRMEEDEYTG---EMYETDVVPT-----LGDIY----SDFDKLRQKARIGKFKAKFVKRK 446

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAFG+ ++P  E   LK+ YPF +P LP +    NF  + GT++SA EL ++KRK+ GP 
Sbjct: 447  YAFGEKDVPREERDWLKVVYPFTEPQLPNNASSPNFSRIFGTNTSAFELLVLKRKIMGPC 506

Query: 507  WLSISKFSSCPAPQ----RVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLK 560
            WL I        P+     VSWCK E TV  PKDI   + +   A  E PP+T+ +++L+
Sbjct: 507  WLQIKH------PEIDNKGVSWCKVEATVSDPKDINPFAETDDDAPKETPPLTIVSLSLR 560

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGF 618
            TV N R+++ EIV A+        ID P        P  L  +  T VR LD   FP  F
Sbjct: 561  TVVNHRENIREIVCATSRIWSNTNIDDPT------PPEALPCTVRTFVRPLDR--FPANF 612

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
                  R S  G  V+    +ER LLN L++ L+K D DV+VGH   G  LDVLLHR + 
Sbjct: 613  EA----RASNNGKGVISPMKNERMLLNNLLVTLHKADPDVIVGHEFLGVSLDVLLHRMRE 668

Query: 679  CRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDL 734
             +  +  WS+IGR +RS+ P + R+G            +  ++GRLLCD  L S   + +
Sbjct: 669  LK--ADHWSRIGRFRRSKWPNIGRQGTN----------LRFLSGRLLCD--LASDGAKGM 714

Query: 735  LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDAWLSMELM 790
            +   ++SLT++ KT L  DR+E+   D    F     + E L+  + + E DA   M L 
Sbjct: 715  ITSTTWSLTEMCKTHLKSDRQEIDFDDTANYFDGSVSSPEPLLNFVRHCELDAHYQMALA 774

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
              + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK  Y K+   A
Sbjct: 775  SKVQLLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDKL-YGKKAATA 833

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             +           E+  NED      T+     K KR   Y GGLV EPK+GL+DKYIL+
Sbjct: 834  MK----------AEKEENEDGEGATKTT-----KSKRD-KYKGGLVFEPKRGLWDKYILV 877

Query: 911  LDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKT-TGVLPELLKNLVQRRRM 964
            +DFNSLYPSIIQEYNI FTTVE + +       +P  PSS+   GVLP L+  LV RRR 
Sbjct: 878  MDFNSLYPSIIQEYNIDFTTVEPAEEDEGGEEKIPEPPSSQVDQGVLPRLIATLVNRRRA 937

Query: 965  VKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            VK  MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL
Sbjct: 938  VKALMKDKKATPAQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREIL 997

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
              T +L ++ + L+V+YGDTDS+ ++S + D+A+A  I+ +  + VN +YK LEIDLDG+
Sbjct: 998  THTRELAES-MQLDVVYGDTDSVFVNSNVTDLAEALKISAEFKKAVNDRYKLLEIDLDGI 1056

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            +KR+LLL+KKKYAAVKV+       EV   KGLDM RR++  LSK V  + L QILS  +
Sbjct: 1057 FKRLLLLQKKKYAAVKVEDSTRTSTEV---KGLDMKRREYCALSKTVSGYVLDQILSGEA 1113

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             E VVE+IH  L+ + + +R+G++ LE+++I K L K PE YPDAK+QPHVQVALR+K  
Sbjct: 1114 TETVVENIHEYLVTIGQQVRAGKIKLEEFIIHKRLGKNPEDYPDAKSQPHVQVALRMKAK 1173

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G +    AGD +PYI C  +G  +  S   A RAR P+E+++   K+ ID ++Y SQQ+ 
Sbjct: 1174 GGT--AHAGDVIPYIFCLGEGGETAKSAQ-ADRARSPEEIRRESDKYKIDYEHYLSQQVL 1230

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
            P + RLC  IEGT   RLA+CLGLDP+++++  +         +L   + D +R++  + 
Sbjct: 1231 PPIERLCEPIEGTDRARLAECLGLDPNRYRTAGTGESEERYFGTLDSLMSDAQRFQDADA 1290

Query: 1323 LILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM 1382
              + C SC +      V            S  E  +  +  L CP+C        +S   
Sbjct: 1291 FQVHCRSCQNVVPFAPV------------SDREKSHIRYSGLVCPQC-----RAAVSIAS 1333

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLV 1442
            +  Q++ Q    ++ YY+   +CDD TC   T     R++G   R  + P    C G + 
Sbjct: 1334 VQTQLEVQIREHIAKYYESWTICDDATCGNRT-----RMMGVYGRRCLRPG---CRGTVA 1385

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
             +Y++A LY QL Y+  L D ++ +E    + K  L+   +  + +       V+R   +
Sbjct: 1386 FEYSDAQLYNQLRYYFSLFDIKKALEAATGATKDDLQTLGHLPQGICDQLREVVERYLNQ 1445

Query: 1503 CAYGWVKLN 1511
            C   WV+++
Sbjct: 1446 CGRRWVQMS 1454


>gi|149042309|gb|EDL96016.1| rCG36239 [Rattus norvegicus]
          Length = 1468

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1547 (34%), Positives = 811/1547 (52%), Gaps = 149/1547 (9%)

Query: 8    VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            VA R R        R EALERLK       ++G+   Y ++    +Y+ V E++Y  LV 
Sbjct: 23   VASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEEQYSKLVQ 77

Query: 68   RRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
             R+++     VDDDG+GY ++G+E  D  +      +  E  DG+   K ++  K+    
Sbjct: 78   ARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKDVKK---- 131

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE 186
               +V KPN       A  GK+      T+      SKD+ + +    ++    + AP  
Sbjct: 132  --PSVTKPNNIKAMFIASAGKK------TTDKTVDLSKDDLLGDILQDLNTETPQIAPPP 183

Query: 187  ADRERRRRSVSSNIKSFV-----SVNSVKTNSQLVTNS---TNSVKENSDLINNFVQIQN 238
                +++RS  +    F      ++ S K  S ++ N    T    ++++      Q + 
Sbjct: 184  VLIPKKKRSTGALPNPFSVDTPKAIPSGKPASLVLRNKPLLTPIPLKHAEFAGELAQPEC 243

Query: 239  CDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECK-KLNAKISTEK- 293
             +  +ES  +++E    D   +  + D    V  K+ D+ +E V+  K + + +  T   
Sbjct: 244  PEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSF 303

Query: 294  -DPLLSATAGWK--EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGAN 350
             D  L   + W   +    + +L E +   N        DD+    FY LDA+E  +   
Sbjct: 304  LDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYED-AYNQ 362

Query: 351  MGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISP 408
             G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++ +  +   +P
Sbjct: 363  PGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE--------MKIDLNTGKETATP 414

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPF 468
            +     ++DV     ++I+ +   +   + IV   ++ YAF   ++P    Y L++ Y  
Sbjct: 415  IT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNYAFEIPDVPEKSEY-LEVRYSA 466

Query: 469  KDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYE 528
            + P LP +LKGE F  + GT++S+LELFL+ RK+KGP WL +        P  +SWCK+E
Sbjct: 467  EVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP--ISWCKFE 524

Query: 529  ITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTP 588
                 P  + V          PP+ V + ++KT+ N +   +EI++ + +  H   +D  
Sbjct: 525  AMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNVKNHQHEIIAMAALVHHNFPLDKA 580

Query: 589  MLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLM 648
                   KP   +HF VV K    IFP  F +    +N +         ++ER LL   +
Sbjct: 581  P-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATERTLLGFFL 630

Query: 649  IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFG 708
             +++KLD D+LVGHNI GF+L+VLL R   C+VP   WSKIGRL+RS MPKL       G
Sbjct: 631  AKVHKLDPDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL-------G 681

Query: 709  SGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            S +  G  +   GR++CD  + +++L+   SY L++L +  L  +R  +   ++  M+  
Sbjct: 682  SRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSE 741

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
               L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLH
Sbjct: 742  PSHLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLH 801

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            AF    YIVPDK  + K     +Q+              +ED   D DT  N ++KG++ 
Sbjct: 802  AFYENNYIVPDKQIFRK----PQQKPG------------DEDEEIDGDT--NKYKKGRKK 843

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL---------- 938
             AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R               
Sbjct: 844  AAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETLKATEDEEQE 903

Query: 939  -VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSM 994
             +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q DI+Q+ALKLTANSM
Sbjct: 904  QIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSM 963

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIMI++   ++
Sbjct: 964  YGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNL 1022

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERK 1113
             +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG      E K
Sbjct: 1023 EEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELK 1082

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +G V + ++ I
Sbjct: 1083 GLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEI 1142

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
             K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC       GS++   
Sbjct: 1143 NKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLPAT 1196

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS 1293
            QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LGLD ++F+ 
Sbjct: 1197 QRAYAPEQLQKQDN-LAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLGLDSTQFRV 1255

Query: 1294 KPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEK 1350
               +    + + +LL     + DEE+Y+ CE     CPSC +      V     M +   
Sbjct: 1256 --HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLCPSCGTENIYDNVFEGSGMDM--- 1310

Query: 1351 PSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
                E   N    + C   P            ++N++       +  YY G +MC++ TC
Sbjct: 1311 ----EPSLNRCSNIDCKASPATFMV------QLSNKLIMDIRRCIKKYYDGWLMCEEPTC 1360

Query: 1411 KYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLDTQRGIEK 1469
            +     L L     +  G +C   P C   ++R +Y++  LY QL ++ ++ D    +EK
Sbjct: 1361 RNRIRRLPLHF---SRNGPLC---PACMKAVLRPEYSDKSLYTQLCFYRYIFDADCALEK 1414

Query: 1470 MEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAIS 1516
            +    K  L+K+     P V      V+ I E     W   +++ +S
Sbjct: 1415 LPEHEKDKLKKQF--FTPRVLQDYRKVKNIAEH-FLSWSGYSEVNLS 1458


>gi|354492235|ref|XP_003508255.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 1
            [Cricetulus griseus]
          Length = 1468

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1564 (34%), Positives = 815/1564 (52%), Gaps = 169/1564 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++     VDDDG GY ++G+E    +       D     G+ S  K   +
Sbjct: 71   QYSKLVQARQDDDWI--VDDDGTGYVEDGRE----IFDDDLEDDALDTSGKGSDGKAHRK 124

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
             R K     +V KPN       A  GK+      T+      SKD+ + +    ++  ++
Sbjct: 125  DR-KDVKKPSVTKPNNIKAMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTDVS 177

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLIN 231
            + AP      +++RS  + +  F SV+S K        S    KE          ++   
Sbjct: 178  QIAPPPVLIPKKKRSSGTLLNPF-SVHSPKAIPPGKPASPVLRKEPLLTPIPIKRAEFAG 236

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRDNF--VEVKEKVKDEVNEDVKECKKLNAKI 289
               Q +  +  +ES  +++E  +  E  + +      V  +  D+ +E          ++
Sbjct: 237  ELSQPECPEDEQESGIMEFEDGDFDEPMEAEEVDGEPVTARTWDQESEP-------EERV 289

Query: 290  STEKDPLLSATAGWK----EVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
              E DP    T+  +    +VS  +M   E +S    QE + +          DD+    
Sbjct: 290  KHETDPKKGTTSFLESFLPDVSCWDMD-QEDESSFLVQEVQVDSTHLPLVKGADDEQVFQ 348

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          
Sbjct: 349  FYWLDAYEDPYN-QPGVVFLFGKVWVESAQTHVSCCVMVKNIERTLYFLPRE-------- 399

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ +  +   +P+     + DV     + IA +   +   + ++   ++ YAF   ++
Sbjct: 400  MKIDLNTGKETTTPVT----MMDVYEEFDSTIAAKYKIMKFKSKVL---EKNYAFEIPDV 452

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + PPLP  LKGE F  + GT++S LELFL+ RK+KGP WL +   +
Sbjct: 453  PEKSEY-LEVRYSAEMPPLPQHLKGETFSHVFGTNTSGLELFLMNRKIKGPCWLEVK--N 509

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
              P  Q +SWCK+E     P  + V          PP+ V + ++KT+ N +   +EI++
Sbjct: 510  PQPLKQPISWCKFEAVALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNIKNHQHEIIA 565

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         KP   +HF VV K    IFP  F +    +N K      
Sbjct: 566  IAALVHHSFALDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMKVE---- 616

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D+LVGHNI GF+L+VLL R  VC+VP   WSKIGRL+R
Sbjct: 617  -VAATERTLLGFFLAKVHKIDPDILVGHNICGFELEVLLQRINVCKVP--YWSKIGRLRR 673

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL       GS +  G  +   GR++CD  + +++L+   SY L++L +  L  +R
Sbjct: 674  SNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTER 726

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   ++  M+     L+ L+E    DA   +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 727  IVIPTENIQNMYSESSHLLYLLEQIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTL 786

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D
Sbjct: 787  MGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEVD 830

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
             DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 831  GDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 888

Query: 934  -----------SPDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQ 979
                            +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q
Sbjct: 889  ALEVQNSTTEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ 948

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIY
Sbjct: 949  YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIY 1007

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V
Sbjct: 1008 GDTDSIMINTNSTNLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVV 1067

Query: 1100 Q-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ 
Sbjct: 1068 EPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIG 1127

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E++ +G + + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+I
Sbjct: 1128 ENVLNGSIPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVI 1186

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C       GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G    
Sbjct: 1187 C-----QDGSNLTATQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAV 1240

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFD 1335
             +A  LGLD ++F+    +    + + +LL     + DEE+Y+ CE     CP+C +   
Sbjct: 1241 LIALWLGLDSTQFRV--HQYHKDEETDALLGGPAQLTDEEKYKDCEKFKCPCPTCGT--- 1295

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
                  +I  +V E  S  + E + +R   + C   P            ++N++      
Sbjct: 1296 -----ENIYDNVFEG-SGIDLEPSLYRCSNVDCKASPLTFMV------QLSNKLTMDIRH 1343

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
             +  YY G ++C++ TC+  T  L L     +  G +C   P C   ++R +Y++  LY 
Sbjct: 1344 CIKKYYDGWLICEEPTCRSRTRRLPLHF---SRNGPLC---PVCMKAVLRPEYSDKSLYT 1397

Query: 1453 QLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
            QL ++ ++ D    +EK+    K  L+K+     P V      ++ I E     W   ++
Sbjct: 1398 QLCFYRYIFDVDCALEKLTEHEKDKLKKQF--FTPKVLHDYKKIKNIAEH-FLSWSGYSE 1454

Query: 1513 IAIS 1516
            + +S
Sbjct: 1455 VNLS 1458


>gi|301608173|ref|XP_002933658.1| PREDICTED: DNA polymerase alpha catalytic subunit [Xenopus (Silurana)
            tropicalis]
          Length = 1462

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1167 (39%), Positives = 660/1167 (56%), Gaps = 124/1167 (10%)

Query: 332  DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DGS    FY LDA+E    +  G +YLFGKV  +    + SCCV VKN++R VY +P   
Sbjct: 339  DGSQVFKFYWLDAYED-QYSQPGVVYLFGKVWIETAEAYVSCCVSVKNIERTVYLLPR-- 395

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
                      E   + S          + +V       +A +     +  +    V++ Y
Sbjct: 396  ----------ENRVQLSTGKDTGVPVSMMNVYQEFNESVAEKY---KIMKFKSKKVEKDY 442

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y    P LP DLKGE F  + GT++S+LELFL+ RK+KGPSW
Sbjct: 443  AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 501

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   S   + Q +SWCK E  V  P  + V    K +A  PPV V ++++KTV N + 
Sbjct: 502  LEIK--SPQLSSQPMSWCKVEAVVMRPDQVNVV---KDLAP-PPVVVLSLSMKTVQNAKT 555

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ + +  HK   D         +P   +HF V+ K +  IFP  F KEA  R +
Sbjct: 556  HQNEIVAMAALVHHKFPFDKAP-----PQPPFQTHFCVLSKPNDCIFPYDF-KEAVKRKN 609

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
                  L    +ER LL   + +++K+D D++VGH+I GFDL+VLL R   C+VP   WS
Sbjct: 610  ANIEIAL----TERTLLGFFLAKIHKIDPDIIVGHDIYGFDLEVLLQRISSCKVP--FWS 663

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR+ F         +   GR++CDT + +++L+R  SY L++L  
Sbjct: 664  KIGRLRRSVMPKL-GGRSGFAE------RNAACGRIICDTEISAKELIRCKSYHLSELVH 716

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++   +     L+ ++E   TDA   +++M  L+VLPL  Q+TNI+G
Sbjct: 717  QILKTERVLMPPENIRNAYSDSAHLLYMLENTWTDAKFILQIMCELNVLPLALQITNIAG 776

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R EYLLLHAF    +IVPDK  + K                 +++ T
Sbjct: 777  NVLSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK-----------------IQQTT 819

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED + + DT  N ++KG++  AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQEYNIC
Sbjct: 820  VEDDD-NMDTDQNKNKKGRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNIC 878

Query: 928  FTTVER-SPDGL-------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTAS---GL 975
            FTTV+R +P          +P LP S    G+LP  ++ LV+RRR VK  MK       L
Sbjct: 879  FTTVQREAPTSQKGEDQEEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDL 938

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
             + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T QGREIL  T ++VQ  +NL
Sbjct: 939  YL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQ-KMNL 996

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIMI++  +++ +   +  +V  EVNK YK LEID+DG++K +LLLKKKKYA
Sbjct: 997  EVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEVNKSYKLLEIDIDGIFKSLLLLKKKKYA 1056

Query: 1096 AVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A+ V+   DG      E KGLD+VRRDW  L+KE G++ +SQILS++  +++VE+I   L
Sbjct: 1057 ALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKEAGNYVISQILSDQPRDNIVENIQKKL 1116

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
             ++ E++ +G V + +Y I K LTK P+ YPD K+ PHV VA+ +   G      AGDT+
Sbjct: 1117 TEIGENVTNGTVPISQYEINKALTKDPQDYPDKKSLPHVHVAMWINSQG-GRKVKAGDTI 1175

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y+IC       GS++  +QRA  P++L+K +    ID  YY SQQ+HPVV+R+C  I+G
Sbjct: 1176 SYVIC-----QDGSNLSASQRAYAPEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPIDG 1229

Query: 1275 TSPERLADCLGLDPSKF-------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
                 +A  LGLDPS+F       Q + ++ +   PS      + DEE+YR CE     C
Sbjct: 1230 IDSALIAMWLGLDPSQFRAHRHHQQDEENDALLGGPSQ-----LTDEEKYRDCERFKFFC 1284

Query: 1328 PSCSSTFDCPAVCSSICMSVS---EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            P C +      V     + +    ++ SKPE          C   P +          + 
Sbjct: 1285 PKCGTENIYDNVFDGSGLQIEPGLKRCSKPE----------CDASPLDYVI------QVQ 1328

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR- 1443
            N++      ++  YY G ++C+++TC+  T  + L     +  G +C     C    +R 
Sbjct: 1329 NKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRVPLSF---SRNGPIC---QACTKATLRS 1382

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM 1470
            +Y E  LY QL ++  + D    +EK+
Sbjct: 1383 EYPEKALYTQLCFYRFIFDWDYALEKV 1409



 Score = 43.5 bits (101), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 1  MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
          M +     A R R    E S R EALERLK       ++G+ V Y ++  + IY+ V E+
Sbjct: 1  MSESGSFAASRSRREKTEKSGRKEALERLKRA-----KAGEKVKYEVEEISSIYEEVDEE 55

Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          +Y  +V  R  +   +IVDDDG GY ++G+E
Sbjct: 56 QYSKIV--RDRQDDDWIVDDDGTGYVEDGRE 84


>gi|297790079|ref|XP_002862950.1| hypothetical protein ARALYDRAFT_359258 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297308733|gb|EFH39209.1| hypothetical protein ARALYDRAFT_359258 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1018

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/790 (50%), Positives = 505/790 (63%), Gaps = 122/790 (15%)

Query: 744  QLAKTQLNKDRKEVG-PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            QL   +  KD  + G P+D+ KMFQ+ ++L+ELIE GETDAWLSMELMFHL+VLPLT QL
Sbjct: 333  QLFVNRPFKDTAKPGQPNDIPKMFQSSKTLVELIECGETDAWLSMELMFHLNVLPLTLQL 392

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            TNISGNLWGKTLQG  AQR E +L H +  KK+I+PDK +        K+R++H V+D  
Sbjct: 393  TNISGNLWGKTLQGGSAQRNELVLRHTYHWKKFILPDKIS-----PHMKERTSHNVDD-- 445

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP-SII 921
                             +   K K+GPAYAGGLV   +K  Y   +     + ++  SII
Sbjct: 446  ----------------PSKGNKTKKGPAYAGGLVWSQRKA-YMTNMCCFSISVVFTLSII 488

Query: 922  QEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLD 981
            QEYNICFTT+ RS DG VP LPSS+T G+LP+L+++LV  R+ VK  MK  + LK ++LD
Sbjct: 489  QEYNICFTTIPRSEDG-VPRLPSSQTPGILPKLMEHLVSIRKCVKLKMKKETDLKCRELD 547

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q+ALKLTANS+YG LGFSNSRFYAKPLAELIT QGREIL+ TVDLVQN+LNLEVIYGD
Sbjct: 548  IRQKALKLTANSLYGYLGFSNSRFYAKPLAELITLQGREILQRTVDLVQNHLNLEVIYGD 607

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            TDSIMIHSG+D+I + KAI  KVIQEVNK                      KY  +K++ 
Sbjct: 608  TDSIMIHSGLDNIKEVKAIGAKVIQEVNK----------------------KYRCLKIE- 644

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV----VESIHNSLMKV 1157
                         LD + +   LL K+       Q    + CED+    V+ +      +
Sbjct: 645  -------------LDCIYKRMLLLRKKKYAAIKLQFKDGKICEDIERKGVDMVRRDWSLL 691

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             +++  G + L K +                          ++Q GY  G SA DTVPYI
Sbjct: 692  SKEI--GDLCLAKILYGG-----------------------MRQRGYKKGFSAKDTVPYI 726

Query: 1218 ICCEQGTSS-GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            IC EQG++S  SS GIA+RARHPDE+K  D +W++DIDYY SQQIHPVVSRLCA I+GTS
Sbjct: 727  ICYEQGSTSLASSAGIAERARHPDEVKSDDNRWLVDIDYYLSQQIHPVVSRLCAEIQGTS 786

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDC 1336
            PERLA+CLGLDPSK++S+ + T  SDPS+SLL A   EERY+ CEPL L+CPSCS+ F+C
Sbjct: 787  PERLAECLGLDPSKYRSRSNVTTCSDPSTSLLCATSYEERYKSCEPLALACPSCSAAFNC 846

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
            P++ +S+C S+S K    E++  FW  LRCPKC  E    RISP MIANQ          
Sbjct: 847  PSITTSVCASISNKSETEESDSIFWLKLRCPKCEAEGSTRRISPAMIANQ---------- 896

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
                    CDDE+CKYTT S N RL+GD ERGTVCPNYP C G L+RKYTEADLY+QL+Y
Sbjct: 897  --------CDDESCKYTTRSPNFRLLGDCERGTVCPNYPNCRGTLLRKYTEADLYRQLSY 948

Query: 1457 FCHLLDTQRGIEK-----------MEISAKIPLEKELNKIRPVVALAASTVQRIRERCAY 1505
            FCH+LDTQ  +EK           M++  +I +EK + KIRP V  AAS  + IR+RC Y
Sbjct: 949  FCHILDTQCSLEKVSTFNLIASNQMDVGVRIQVEKAMTKIRPAVESAASMARSIRDRCGY 1008

Query: 1506 GWVKLNDIAI 1515
            GW++L DIAI
Sbjct: 1009 GWLQLTDIAI 1018



 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 194/368 (52%), Gaps = 67/368 (18%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           M  E     GR+ S G EAS+R EALERLKA R+GG R+G      I+L+ PI+DTV ++
Sbjct: 1   MSAENSREVGRKLSLGLEASSRKEALERLKATRKGGLRNGGGGC-EIRLQKPIFDTVGDE 59

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           EY +LV+RRREE RGF+VDD  LGY DEG+EEDWS     + S DES D           
Sbjct: 60  EYQSLVSRRREEDRGFVVDDGDLGYVDEGEEEDWSKPSGGAESTDESDD----------- 108

Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFK-KSKDEKVKESESVIDEVL 179
             G +   +   K   +L  AA++ G+ RLS+M T ++  K K   +KVK  ES++DEVL
Sbjct: 109 -YGGRLQRRKTAKKKKTLKGAASITGEGRLSSMFTCSSFNKGKETTDKVKCCESILDEVL 167

Query: 180 AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK-ENSDLINNFVQIQN 238
           AEF PD+ DRER +R      K   +VN       LV +S + V  E   ++  F     
Sbjct: 168 AEFTPDDMDRERHKRR-----KQSATVN----KKYLVHDSPSIVTMEKEQVVTEF----- 213

Query: 239 CDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIST-EKDPLL 297
            +V+  S                                D  E   LNA I   +KD  L
Sbjct: 214 -EVIPPS--------------------------------DANEVFTLNAAIDMKDKDTPL 240

Query: 298 SATAGWKEV--SGG--NMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGT 353
           SA AGWKE   +GG  N V     S   CQ  EF+++ DGSL FYILDA E+   A+MGT
Sbjct: 241 SANAGWKEAMCTGGTENEVPLASGSDSECQTEEFDLEADGSLLFYILDACEKPFDASMGT 300

Query: 354 LYLFGKVK 361
           +YLFGKVK
Sbjct: 301 IYLFGKVK 308


>gi|440910592|gb|ELR60375.1| DNA polymerase alpha catalytic subunit, partial [Bos grunniens mutus]
          Length = 1455

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1513 (35%), Positives = 813/1513 (53%), Gaps = 157/1513 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D + +VA R R        R +ALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 3    VSDSRSLVASRSRREKKSKKGRQQALERLKR-----AKAGEKYKYEVEDFTSVYEEVDEE 57

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++     VDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 58   QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDNKACNKDKRT 115

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             KR        V KPN   +   A  G++      T       SKD+ + +    ++   
Sbjct: 116  VKRAA------VTKPNNIKSMFIASAGRK------TVDKAVDLSKDDLLGDILQDLNTET 163

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNC 239
             +  P      +++RS  +++  F SV++ K      T    S +E S         +  
Sbjct: 164  PQITPPPVIIPKKKRSSGASLNPF-SVHTPKAAPSGKTTPPASRREPSLTPAPLTCAEFA 222

Query: 240  ---------DVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIS 290
                     D  EES  +++E  +  E  + +  V+V+      + ++ +  ++   K  
Sbjct: 223  GEPGPPLCTDDKEESGAMEFEDGDFDEPMEAEE-VDVEPVAAKTLCQEREPAEEAKHKAD 281

Query: 291  TEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILD 341
            + K    S+ +   +VS  +M   E  S  +  E + +          D++    FY LD
Sbjct: 282  SGKGTTSSSASFLPDVSCWDMD-QEDDSSFSALEVQVDSSHLPLVKGADEEQVFQFYWLD 340

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            A+E    +  G ++LFGKV  ++  TH SCCV+VKN++R +  +P          MK++ 
Sbjct: 341  AYED-PYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERSLCFLPRE--------MKVDL 391

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            +  +   +P+     ++DV      +IA +   +   + +V   ++ YAF   ++P    
Sbjct: 392  NTGKESGTPVT----MKDVYDEFDEKIAAKYKIMKFKSKVV---EKNYAFEIPDVPEKSE 444

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +        P
Sbjct: 445  Y-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP 503

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
              +SWCK E  V  P  + V    K V   PPV V ++++KT+ N +   NEI++ S + 
Sbjct: 504  --ISWCKVEAMVLKPDLVNVI---KDVGP-PPVVVMSLSMKTMQNAKTHENEIIAVSALV 557

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
             H   +D         +P   SHF VV K    IFP  F +   ++N K         ++
Sbjct: 558  HHSFALDKAP-----PQPPFQSHFCVVSKPKDSIFPYDFKESIKEKNVKVE-----VAAT 607

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS MPK
Sbjct: 608  ERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP--FWSKIGRLKRSNMPK 665

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L  GR+ FG   +    +C  GR++CD  + +++L+R  SY L++L +  L  +R  +  
Sbjct: 666  L-GGRSGFGEKNA----TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPI 718

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
              +  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R+
Sbjct: 719  ETIRNMYSDSSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRS 778

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            +R E+LLLHAF    YIVPDK T+ K                  ++L +ED + D DT  
Sbjct: 779  ERNEFLLLHAFYENNYIVPDKQTFRKPQ----------------QKLGDEDEDIDGDT-- 820

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP---- 935
            N ++KG++  AY+GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R      
Sbjct: 821  NKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 880

Query: 936  ----DG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQ 984
                DG    +P LP  S   G+LP  ++ LV+RRR VK  MK       L + Q DI+Q
Sbjct: 881  KVVEDGEQEQIPELPDPSLGMGILPREIRKLVERRRQVKQLMKQQDLNPDLHL-QYDIRQ 939

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 940  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDS 998

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 999  IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALIVEPTSD 1058

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS+++ + +VE+I   L+++ E++ +
Sbjct: 1059 GNYVTKQEVKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIEIGENVLN 1118

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1119 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1173

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1174 -QDGSNLTAGQRAYAPEQLQKQDN-LSIDTQYYLAQQIHPVVARICEPIDGIDAILIASW 1231

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPAV 1339
            LGLDP++F+         D  +  L      + DEE+Y+ CE     CP+C +       
Sbjct: 1232 LGLDPTQFR---VHHYHKDEENDALLGGPAHLTDEEKYKDCERFKCPCPTCGT------- 1281

Query: 1340 CSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
              +I  SV +  S  + E + +R   + C   P            ++N++       +  
Sbjct: 1282 -ENIYDSVLDG-SGTDMEPSLYRCSNINCKASPLTFMV------QLSNKLIMDIRRCIKK 1333

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            YY+G ++C++ TC+  T  L L+    +  G +C    +   RL  +Y++  LY QL ++
Sbjct: 1334 YYEGWLICEEPTCRNRTRHLPLQF---SRNGPLCQVCMKATLRL--EYSDKSLYTQLCFY 1388

Query: 1458 CHLLDTQRGIEKM 1470
             ++ D +  +EK+
Sbjct: 1389 RYIFDAECALEKL 1401


>gi|329663230|ref|NP_001192994.1| DNA polymerase alpha catalytic subunit [Bos taurus]
 gi|296470534|tpg|DAA12649.1| TPA: polymerase (DNA directed), alpha 1, catalytic subunit [Bos
            taurus]
          Length = 1462

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1513 (35%), Positives = 814/1513 (53%), Gaps = 157/1513 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D + +VA R R        R +ALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSRSLVASRSRREKKSKKGRQQALERLKR-----AKAGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      S ++  D +   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDNKACNKDKRT 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             KR        V KPN   +   A  G++      T       SKD+ + +    ++   
Sbjct: 123  VKRAA------VTKPNNIKSMFIASAGRK------TVDKAVDLSKDDLLGDILQDLNTET 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNC 239
             +  P      +++RS  +++  F SV++ K      T    S +E S         +  
Sbjct: 171  PQITPPPVIIPKKKRSSGASLNPF-SVHTPKAAPSGKTTPPASRREPSLTPAPLTCAEFA 229

Query: 240  ---------DVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIS 290
                     D  EES  +++E  +  E  + +  V+V+      + ++ +  ++   K  
Sbjct: 230  GEPGPPLCTDDKEESGAMEFEDGDFDEPMEAEE-VDVEPVAAKTLCQEREPAEEAKHKAD 288

Query: 291  TEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILD 341
            + K    S+ +   +VS  +M   E  S  +  E + +          D++    FY LD
Sbjct: 289  SGKGTTSSSASFLPDVSCWDMD-QEDDSSFSALEVQVDSSHLPLVKGADEEQVFQFYWLD 347

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
            A+E    +  G ++LFGKV  ++  TH SCCV+VKN++R +  +P          MK++ 
Sbjct: 348  AYED-PYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERSLCFLPRE--------MKVDL 398

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
            +  +   +P+     ++DV      +IA +   +   + +V   ++ YAF   ++P    
Sbjct: 399  NTGKESGTPVT----MKDVYDEFDEKIAAKYKIMKFKSKVV---EKNYAFEIPDVPEKSE 451

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +        P
Sbjct: 452  Y-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP 510

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
              +SWCK E  V  P  + V    K V   PPV V ++++KT+ N +   NEI++ S + 
Sbjct: 511  --ISWCKVEAMVLKPDLVNVI---KDVGP-PPVVVMSLSMKTMQNAKTHENEIIAVSALV 564

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
             H   +D         +P   SHF VV K    IFP  F +   ++N K         ++
Sbjct: 565  HHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYDFKESIKEKNVKVE-----VAAT 614

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS MPK
Sbjct: 615  ERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP--FWSKIGRLKRSNMPK 672

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L  GR+ FG   +    +C  GR++CD  + +++L+R  SY L++L +  L  +R  +  
Sbjct: 673  L-GGRSGFGEKNA----TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPI 725

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
              +  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R+
Sbjct: 726  ETIRNMYSDSSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRS 785

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            +R E+LLLHAF    YIVPDK T+ K                  ++L +ED + D DT  
Sbjct: 786  ERNEFLLLHAFYENNYIVPDKQTFRKPQ----------------QKLGDEDEDIDGDT-- 827

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP---- 935
            N ++KG++  AY+GGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R      
Sbjct: 828  NKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 887

Query: 936  ----DG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQ 984
                DG    +P LP  S   G+LP  ++ LV+RRR VK  MK       L + Q DI+Q
Sbjct: 888  KVVEDGEQEQIPELPDPSLEMGILPREIRKLVERRRQVKQLMKQQDLNPDLHL-QYDIRQ 946

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDS
Sbjct: 947  KALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDS 1005

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 1006 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALIVEPTSD 1065

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS+++ + +VE+I   L+++ E++ +
Sbjct: 1066 GNYVTKQEVKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIEIGENVLN 1125

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1126 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1180

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1181 -QDGSNLTAGQRAYAPEQLQKQDN-LSIDTQYYLAQQIHPVVARICEPIDGIDAILIASW 1238

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPAV 1339
            LGLDP++F+         D  +  L      + DEE+Y+ CE     CP+C +       
Sbjct: 1239 LGLDPTQFR---VHHYHKDEENDALLGGPAHLTDEEKYKDCERFKCPCPTCGT------- 1288

Query: 1340 CSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
              +I  SV +  S  + E + +R   + C   P            ++N++       +  
Sbjct: 1289 -ENIYDSVLDG-SGTDMEPSLYRCSNINCKASPLTFMV------QLSNKLIMDIRRCIKK 1340

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            YY+G ++C++ TC+  T  L L+    +  G +C    +   RL  +Y++  LY QL ++
Sbjct: 1341 YYEGWLICEEPTCRNRTRHLPLQF---SRNGPLCQVCMKATLRL--EYSDKSLYTQLCFY 1395

Query: 1458 CHLLDTQRGIEKM 1470
             ++ D +  +EK+
Sbjct: 1396 RYIFDAECALEKL 1408


>gi|118084071|ref|XP_416792.2| PREDICTED: DNA polymerase alpha catalytic subunit [Gallus gallus]
          Length = 1496

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1567 (34%), Positives = 805/1567 (51%), Gaps = 242/1567 (15%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
             + EALERLK       ++G+ + Y ++    +YD + E++Y  +V  R  +   +IVDD
Sbjct: 26   GQQEALERLKKA-----KAGEKLKYEVEEFTGVYDEIDEEQYSKIV--RERQDDDWIVDD 78

Query: 81   DGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN-VRKPNPSLT 139
            DG+GY ++G+E            DD++L   +  K  +    GKK   ++ V KPN   +
Sbjct: 79   DGIGYVEDGRE------IFDEDLDDDALGSSKKGKTGKTSTIGKKNVKKSVVAKPNTIKS 132

Query: 140  AAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSN 199
               A  GK+       +      SKD+ + +    ++    + +P      +R+RS    
Sbjct: 133  MFIASAGKK------NTDKTVDLSKDDLLGDILQDLNAETVQLSPPPILVLKRKRSAGMP 186

Query: 200  IKSF---------VSVNSVKTNSQL-----------------VTNSTNSVKENSDLINNF 233
            +  F         ++  S K   QL                    S  + +EN D    +
Sbjct: 187  LNPFSVQRQSPKVITPVSKKAPVQLRKEARPPASFHPKHPNYTAKSVTASEENED--TKY 244

Query: 234  VQ--IQNCDVVEESKELKWESDN-------------------------STELTKRDNFVE 266
            VQ   +N  VV+  +E   E D+                         + E  KRD  VE
Sbjct: 245  VQKATENGRVVKTKEEKAIEDDDQGMMDFDDEDFDEPMEAELMGAVPETAETLKRDKEVE 304

Query: 267  VKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVS--GGNMVLDEGKSGLNCQE 324
             KE        +  E KK  A   +   P +S    W +V     ++V  + +   N   
Sbjct: 305  KKEM-------EQLESKKKEASALSHSLPDISC---WDKVEEDEADLVATDVQLDPNLLP 354

Query: 325  SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYA 382
                 +DD  L FY LDA+E    +  G ++LFGKV  ++ +T+ SCCV VKN++R VY 
Sbjct: 355  LVNGENDDQVLRFYWLDAYED-QYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVYL 413

Query: 383  IPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVS 441
            +P                           R+   D++ G +TE    ++N     N  +S
Sbjct: 414  LP---------------------------RETEMDLSSGKETETPVTIMNVFKEFNDCIS 446

Query: 442  P-----------VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
            P           V++ YAF   ++PA   Y L++ Y  + P LP DLKGE F    GT++
Sbjct: 447  PKYKIMKFKSKKVEKYYAFEIPDVPAKSEY-LEVKYSAEYPRLPQDLKGETFSHAFGTNT 505

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            S+LEL L+ RK+KGP WL I   +  P+ Q VSWCK E     P  + V    K +   P
Sbjct: 506  SSLELLLMSRKIKGPCWLEIK--NPQPSNQSVSWCKVEAVAMKPGLVNV---VKDLPPPP 560

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+ V + ++KT+ N +   NEIV+ + +   K  +D         +P   +HF  V K +
Sbjct: 561  PLVVMSFSMKTIQNPKTHQNEIVAMAALIHQKFPLDKAP-----PQPPFQTHFCAVSKPN 615

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
              IFP  F +E   +N+K     +   ++ER LL   + +++K+D DV+VGHNI GFDL+
Sbjct: 616  DCIFPYDFKEEIKKKNAK-----IEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLE 670

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            VLL R  VC+VP   WSKIGRL+RS MPKL  GR  FG        +   GR++CD  + 
Sbjct: 671  VLLQRINVCKVPH--WSKIGRLRRSNMPKL-GGRGGFGE------RNAACGRMICDVEIS 721

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELM 790
            +++L+R  SY L++L    L  +R  + P ++  ++     L+ ++E   TDA   +++M
Sbjct: 722  AKELIRCKSYHLSELVHQILKTERVTILPEEIRNLYSDSPHLLFMLENTWTDAKFILQIM 781

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
              L+VLPL  Q+TNISGN+  +T+ G R++R E+LLLHAF  K YIVPDK  + K     
Sbjct: 782  CELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVPDKQVFKKP---- 837

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
                        +++L +ED +F++    N  + GK+  AYAGGLVL+PK G YDK+ILL
Sbjct: 838  ------------LQKLVDEDEDFED---QNKSKIGKKKAAYAGGLVLDPKVGFYDKFILL 882

Query: 911  LDFNSLYPSIIQEYNICFTTVER-----------SPDGLVPHLPS-SKTTGVLPELLKNL 958
            LDFNSLYPSIIQE+NICFTTV+R             +  +P LP  S   G+LP+ ++ L
Sbjct: 883  LDFNSLYPSIIQEFNICFTTVQRLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKL 942

Query: 959  VQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            V+RRR VK  MK       L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T
Sbjct: 943  VERRRQVKQLMKQPDLNPDLYL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVT 1001

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL  T ++VQ  +NLEVIYGDTDSIMI++   ++ +   +  K+  EVNK YK L
Sbjct: 1002 HKGREILMHTKEMVQ-KMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLL 1060

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+DG++K +LLLKKKKYAA+ V+   DG      E KGLD+VRRDW  L+KE G++ +
Sbjct: 1061 EIDIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVI 1120

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             QILS++  + +VE+I   L+++ E++ +GQ+ + ++ I K LTK P+ YPD K+ PHV 
Sbjct: 1121 GQILSDQPRDIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQDYPDKKSLPHVH 1180

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            VA+ +   G      AGDTV YIIC       GS++  +QRA  P++L+K D    ID  
Sbjct: 1181 VAMWINSQG-GRKVKAGDTVSYIIC-----QDGSNLSASQRAYAPEQLQKQDN-LTIDTQ 1233

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---- 1310
            YY SQQIHPVV+R+C  IEG     +A  LGLDPS+F+         D  +  L      
Sbjct: 1234 YYLSQQIHPVVARICEPIEGIDSVLIATWLGLDPSQFRV--HHHYHKDEENDALVGGPAQ 1291

Query: 1311 VGDEERYRGCEPLILSCPSCSS------TFDCPAVCSSICMSVSEKPSKPETEYNFWRTL 1364
            + DEE+YR CE     C  C +       FDC        +    K    E  +N    +
Sbjct: 1292 LTDEEKYRDCERFKFCCLKCGTENIYDNVFDCSGRFIEPSLQRCSKSECEEPPFNHVVQM 1351

Query: 1365 RCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGD 1424
                                N++      ++  YY G ++C+D TC+  T  L L     
Sbjct: 1352 N-------------------NKLLLDIRRYLKKYYNGWLICEDPTCQNRTRRLPLSF--- 1389

Query: 1425 AERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLDTQRGIEKM------EISAKIP 1477
            +  G +C     C   ++R +Y++  LY QL ++ ++ D +   +K+      E   + P
Sbjct: 1390 SRSGPIC---QACRKAILRPEYSDKALYTQLCFYRYIFDVEYATDKVITEEDREFVRRKP 1446

Query: 1478 LEKELNK 1484
            L KE+++
Sbjct: 1447 LRKEVSE 1453


>gi|281604221|ref|NP_445931.1| DNA polymerase alpha catalytic subunit [Rattus norvegicus]
          Length = 1468

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1555 (34%), Positives = 810/1555 (52%), Gaps = 151/1555 (9%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++     VDDDG+GY ++G+E  D  +      +  E  DG+   K ++ 
Sbjct: 71   QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKD 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+       +V KPN       A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------PSVTKPNNIKAMFIASAGKK------TTDKTVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             + AP      +++RS  ++   F SV++          S  S KE          ++  
Sbjct: 177  PQIAPPPVLIPKKKRSTGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 235

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECK-KLN 286
             +  Q +  +  +ES  +++E    D   +  + D    V  K+ D+ +E V+  K + +
Sbjct: 236  GDLAQPECPEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPVEGVKHEAD 295

Query: 287  AKISTEK--DPLLSATAGWK--EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDA 342
             +  T    D  L   + W   +    + +L E +   N        DD+    FY LDA
Sbjct: 296  PETGTTSFLDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDA 355

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
            +E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++ +
Sbjct: 356  YEDPYN-QPGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE--------MKIDLN 406

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
              +   +P+     ++DV     ++I+ +   +   + IV   ++ YAF   ++P    Y
Sbjct: 407  TGKETATPIT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNYAFEIPDVPEKSEY 459

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             L++ Y  + P LP +LKGE F  + GT++S+LELFL+ RK+KGP WL +        P 
Sbjct: 460  -LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP- 517

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
             +SWCK+E     P  + V          PP+ V + ++KT+ N +   +EI++ + +  
Sbjct: 518  -ISWCKFEAMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNVQNHQHEIIAMAALVH 572

Query: 581  HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSE 640
            H   +D         KP   +HF VV K    IFP  F +    +N +         ++E
Sbjct: 573  HNFPLDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATE 622

Query: 641  RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL 700
            R LL   + +++KLD D+LVGHNI GF+L+VLL R   C+VP   WSKIGRL+RS MPKL
Sbjct: 623  RTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL 680

Query: 701  RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPH 760
                   GS +  G  +   GR++CD  +  ++L+   SY L++L +  L  +R  +   
Sbjct: 681  -------GSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTE 733

Query: 761  DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++
Sbjct: 734  NIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 793

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            R E+LLLHAF    YIVPDK  + K     +Q+              +ED   D DT  N
Sbjct: 794  RNEFLLLHAFYENNYIVPDKQIFRK----PQQKPG------------DEDEEIDGDT--N 835

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-- 938
             ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R       
Sbjct: 836  KYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETLK 895

Query: 939  ---------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQA 986
                     +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q DI+Q+A
Sbjct: 896  ATEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKA 955

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIM
Sbjct: 956  LKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIM 1014

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGM 1105
            I++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG 
Sbjct: 1015 INTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGN 1074

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                 E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +G 
Sbjct: 1075 YITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGS 1134

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC      
Sbjct: 1135 VPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----Q 1188

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
             GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LG
Sbjct: 1189 DGSNLPATQRAYAPEQLQKQDN-LAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLG 1247

Query: 1286 LDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            LD ++F+    +    + + +LL     + DEE+Y+ CE     CPSC +      V   
Sbjct: 1248 LDSTQFRV--HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLCPSCGTENIYDNVFEG 1305

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
              M +       E   N    + C   P            ++N++       +  YY G 
Sbjct: 1306 SGMDM-------EPSLNRCSNIDCKASPATFMV------QLSNKLIMDIRRCIKKYYDGW 1352

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLL 1461
            ++C++ TC+     L L     +  G +C   P C   ++R +Y++  LY QL ++ ++ 
Sbjct: 1353 LICEEPTCRNRIRRLPLHF---SRNGPLC---PACMKAVLRPEYSDKSLYTQLCFYRYIF 1406

Query: 1462 DTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAIS 1516
            D    +EK+    K  L+K+     P V      V+ I E     W   +++ +S
Sbjct: 1407 DADCALEKLPEHEKDKLKKQF--FTPRVLQDYRKVKNIAEH-FLSWSGYSEVNLS 1458


>gi|6015013|sp|O89042.1|DPOLA_RAT RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
            Full=DNA polymerase alpha catalytic subunit p180
 gi|3676242|emb|CAA09720.1| DNA polymerase alpha subunit I [Rattus norvegicus]
          Length = 1451

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1521 (34%), Positives = 798/1521 (52%), Gaps = 148/1521 (9%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++     VDDDG+GY ++G+E  D  +      +  E  DG+   K ++ 
Sbjct: 71   QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKD 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+       +V KPN       A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------PSVTKPNNIKAMFIASAGKK------TTDKTVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             + AP      +++RS  ++   F SV++          S  S KE          ++  
Sbjct: 177  PQIAPPPVLIPKKKRSTGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 235

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECK-KLN 286
             +  Q +  +  +ES  +++E    D   +  + D    V  K+ D+ +E V+  K + +
Sbjct: 236  GDLAQPECPEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPVEGVKHEAD 295

Query: 287  AKISTEK--DPLLSATAGWK--EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDA 342
             +  T    D  L   + W   +    + +L E +   N        DD+    FY LDA
Sbjct: 296  PETGTTSFLDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDA 355

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
            +E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK++ +
Sbjct: 356  YEDPYN-QPGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE--------MKIDLN 406

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
              +   +P+     ++DV     ++I+ +   +   + IV   ++ YAF   ++P    Y
Sbjct: 407  TGKETATPIT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNYAFEIPDVPEKSEY 459

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             L++ Y  + P LP +LKGE F  + GT++S+LELFL+ RK+KGP WL +        P 
Sbjct: 460  -LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP- 517

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
             +SWCK+E     P  + V          PP+ V + ++KT+ N +   +EI++ + +  
Sbjct: 518  -ISWCKFEAMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNVQNHQHEIIAMAALVH 572

Query: 581  HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSE 640
            H   +D         KP   +HF VV K    IFP  F +    +N +         ++E
Sbjct: 573  HNFPLDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATE 622

Query: 641  RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL 700
            R LL   + +++KLD D+LVGHNI GF+L+VLL R   C+VP   WSKIGRL+RS MPKL
Sbjct: 623  RTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL 680

Query: 701  RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPH 760
                   GS +  G  +   GR++CD  +  ++L+   SY L++L +  L  +R  +   
Sbjct: 681  -------GSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTE 733

Query: 761  DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++
Sbjct: 734  NIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 793

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            R E+LLLHAF    YIVPDK  + K     +Q+              +ED   D DT  N
Sbjct: 794  RNEFLLLHAFYENNYIVPDKQIFRK----PQQKPG------------DEDEEIDGDT--N 835

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-- 938
             ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R       
Sbjct: 836  KYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETLK 895

Query: 939  ---------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQA 986
                     +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q DI+Q+A
Sbjct: 896  ATEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKA 955

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIM
Sbjct: 956  LKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIM 1014

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGM 1105
            I++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG 
Sbjct: 1015 INTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGN 1074

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                 E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +G 
Sbjct: 1075 YITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGS 1134

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC      
Sbjct: 1135 VPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----Q 1188

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
             GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LG
Sbjct: 1189 DGSNLPATQRAYAPEQLQKQDN-LAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLG 1247

Query: 1286 LDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            LD ++F+    +    + + +LL     + DEE+Y+ CE     CPSC +      V   
Sbjct: 1248 LDSTQFRV--HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLCPSCGTENIYDNVFEG 1305

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
              M +       E   N    + C   P            ++N++       +  YY G 
Sbjct: 1306 SGMDM-------EPSLNRCSNIDCKASPATFMV------QLSNKLIMDIRRCIKKYYDGW 1352

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLL 1461
            ++C++ TC+     L L     +  G +C   P C   ++R +Y++  LY QL ++ ++ 
Sbjct: 1353 LICEEPTCRNRIRRLPLHF---SRNGPLC---PACMKAVLRPEYSDKSLYTQLCFYRYIF 1406

Query: 1462 DTQRGIEKMEISAKIPLEKEL 1482
            D    +EK+    K  L+K+ 
Sbjct: 1407 DADCALEKLPEHEKDKLKKQF 1427


>gi|32329599|gb|AAP45777.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1610 (32%), Positives = 819/1610 (50%), Gaps = 203/1610 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D     +GR   +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1    MSDNYTTQSGREIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
            EY+ +  +R+ +   FIVDDDG GY D G E       +    D+E + G++  +K    
Sbjct: 59   EYERIQDQRKND--DFIVDDDGFGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117  -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSK 164
                         I K     N+ N++ K  P +TA  +M     L   L +  +    +
Sbjct: 110  EQHITNFMMPASTIRKNKGTGNSSNIQIKQKPKVTAEQSMDIMNNLLQELDNKDV---DE 166

Query: 165  DEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVK 224
             E V  S +V+ E+    A ++ +    +  V+   K  + V   +   Q    +    +
Sbjct: 167  LEDVNAS-AVMAELNKPIAFNKNEELLNKYGVTLESKQEIQVKR-QLEQQQHEQTIGQHQ 224

Query: 225  ENSDLINN---FVQIQNCDVVEESKELKWESDNSTELTKRDN--FVEVKEKVKDEVNEDV 279
            +N+++ +      +IQ   + +E +EL       T + +  N  + + K ++  + + + 
Sbjct: 225  QNANVFSKKRKLDEIQQPQIKKEHQELNKSRQTXTIIHQSSNTSYFDAKSQLSHDQSMEY 284

Query: 280  KEC---KKLNAKISTEKDPL-------------LSATAG--WKEVSGGNMVLD------E 315
            +      K++   S +K+ +             +SA+    W ++   N          E
Sbjct: 285  QSAVDDSKMSESSSAQKNAMNEGPIAFSKNQTNMSASKNDEWAQIKHQNQQAHQEFKTME 344

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
             KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + V
Sbjct: 345  QKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIYQPEINQYVSCSMKV 401

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
              MQR +YA+P           K++K      ++     + ++ V L L+ +I  +    
Sbjct: 402  NGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ- 448

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S L
Sbjct: 449  GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSML 507

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAE 548
            ELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  +
Sbjct: 508  ELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKTD 561

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+T      KT    + + NEI   S +  +    + P    +++       FT+V K
Sbjct: 562  IPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVXK 614

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G  
Sbjct: 615  LDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGGI 669

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLC 725
             D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL 
Sbjct: 670  FDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLLV 725

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWL 785
            DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++ 
Sbjct: 726  DTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSYY 785

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K
Sbjct: 786  TFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----K 840

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            +   AK      + D   E          NDT         ++   YAGGLV+EPK G Y
Sbjct: 841  KPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGFY 890

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGLV 939
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  +
Sbjct: 891  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDL 950

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCL
Sbjct: 951  PDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGCL 1010

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++ 
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDM 1117
             +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLDM
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK  
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKXX 1190

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            T+    Y D K QPHV VA RLK  G S      + +PY+I      ++ S+  ++ +A 
Sbjct: 1191 TRAISEYSDIKGQPHVXVAQRLKNQGKSEADLVNNFIPYVIGAXAFDTAKSNPQLSDKAY 1250

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QS 1293
            HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    + 
Sbjct: 1251 HPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSEK 1310

Query: 1294 KPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
            K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS 
Sbjct: 1311 KNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS- 1368

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                          L C KC       +I    + N+V       +++YY+G   C + +
Sbjct: 1369 -------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEPS 1410

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI-- 1467
            CK  T  L             C N   C G++V +Y+E      L Y   L + ++ +  
Sbjct: 1411 CKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLHE 1461

Query: 1468 ----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1462 NSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYNKVDLGSI 1504


>gi|326913507|ref|XP_003203079.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Meleagris
            gallopavo]
          Length = 1503

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1520 (35%), Positives = 809/1520 (53%), Gaps = 175/1520 (11%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
             + EALERLK  +     +G+ + Y ++    +YD + E++Y  +V  R  +   +IVDD
Sbjct: 26   GQQEALERLKKAK-----AGEKLKYEVEEFTGVYDEIDEEQYSKIV--RERQDDDWIVDD 78

Query: 81   DGLGYGDEGQE-------------EDWSVAGLPSSSDDESLDGQ-----RSIKKQRIEKR 122
            DG+GY ++G+E                  +G  S++D +++         +IK   I   
Sbjct: 79   DGIGYVEDGREIFDEDLDDDALDSSKKGKSGKASTTDKKNVKKSVVSKPNTIKSMFIASA 138

Query: 123  GKKENN---------------QNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEK 167
            GKK  +               Q++      L+    ++ K++ SA +       +S+  K
Sbjct: 139  GKKNTDKTVDLSKDDLLGDILQDLNAETVQLSPPPILVLKRKRSAGMPLNPFSVQSQAPK 198

Query: 168  V------KESESVIDEVL--AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNS 219
            V      K    +  E L  A F P   +   +  + S   +    V     N ++V   
Sbjct: 199  VITPVSKKAPVQLRKEALPPASFHPKHPNYTAKSVTASEENEDTKFVQKPTENGRIVKTK 258

Query: 220  TNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDV 279
                 E+ D        ++ D   E+ EL      + E +KRD  VE KE+      E +
Sbjct: 259  EEKAIEDDDQGMMDFDDEDFDEPMEA-ELMGTVPETVETSKRDKEVEKKER------EQL 311

Query: 280  KECKKLNAKISTEKDPLLSATAGWKEVSG--GNMVLDEGKSGLNCQESEFEVDDDGSLPF 337
            +  KK  + +S      L   + W +V     ++V+ + +   N        +DD  L F
Sbjct: 312  ESVKKETSVLSYS----LPDISCWDKVDEDEADLVVTDVQLDPNLLPLVHGENDDQVLRF 367

Query: 338  YILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            Y LDA+E    +  G ++LFGKV  ++ +T+ SCCV VKN++R VY +P     +T+  M
Sbjct: 368  YWLDAYED-QYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVYLLPR----ETE--M 420

Query: 396  KLEKDAE-ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             L    E E+ ++ M   K+  D ++  K +I           +    V++ YAF   ++
Sbjct: 421  DLSSGKETETPVTIMNVFKEFND-SISPKYKIMK---------FKSKKVEKYYAFEIPDV 470

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            PA   Y L++ Y  + P LP DLKGE F    GT++S+LEL L+ RK+KGP WL I   +
Sbjct: 471  PAKSEY-LEVKYSAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCWLEIK--N 527

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
              P+ Q VSWCK E     P  + V    K +   PP+ V ++++KT+ N +   NEIV+
Sbjct: 528  PQPSNQSVSWCKIEAVAMKPGLVNVV---KDLPPPPPLVVMSLSMKTIQNPKTHQNEIVA 584

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +   K  +D         +P   +HF  V K +  IFP  F +E   +N+K     +
Sbjct: 585  MAALIHQKFPLDKAP-----PQPPFQTHFCAVSKPNDCIFPYDFKEEIKKKNAK-----I 634

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D DV+VGHNI GFDL+VLL R  VC+VP   WSKIGRL+R
Sbjct: 635  EIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVPH--WSKIGRLRR 692

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL  GR  FG   +    +C  GR++CD  + +++L+R  SY L++L    L  +R
Sbjct: 693  SNMPKL-GGRGGFGERNA----AC--GRMICDVEISAKELIRCKSYHLSELVHQILKTER 745

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              + P ++  M+     L+ ++E   TDA   +++M  L+VLPL  Q+TNISGN+  +T+
Sbjct: 746  VTIVPEEIRNMYSDSPHLLFMLENTWTDAKFILQIMCELNVLPLALQITNISGNVMSRTM 805

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R E+LLLHAF  K YIVPDK  + K                 +++L +ED +F+
Sbjct: 806  MGGRSERNEFLLLHAFYEKDYIVPDKQVFKKP----------------LQKLVDEDEDFE 849

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
            +    N  + G++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 850  D---QNKSKMGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRL 906

Query: 934  ----------SPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQ 979
                        +  +P LP  S   G+LP+ ++ LV+RRR VK  MK       L + Q
Sbjct: 907  SSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYL-Q 965

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIY
Sbjct: 966  YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ-KMNLEVIY 1024

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   ++ +   +  K+  EVNK YK LEID+DG++K +LLLKKKKYAA+ V
Sbjct: 1025 GDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALTV 1084

Query: 1100 Q-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG      E KGLD+VRRDW  L+KE G++ + QILS++  + +VE+I   L+++ 
Sbjct: 1085 EPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQPRDVIVENIQRRLIEIG 1144

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E++ +GQ+ + ++ I K LTK P+ YPD K+ PHV VA+ +   G      AGDTV YII
Sbjct: 1145 ENVINGQIPVNQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQG-GRKVKAGDTVSYII 1203

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C       GS++  +QRA  P++L+K D    ID  YY SQQIHPVV+R+C  IEG    
Sbjct: 1204 C-----QDGSNLSASQRAYAPEQLQKQDN-LTIDTQYYLSQQIHPVVARICEPIEGIDSV 1257

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSS-- 1332
             +A  LGLDPS+F+         D  +  L      + DEE+YR CE     C  C +  
Sbjct: 1258 LIATWLGLDPSQFRV--HHHYHKDEENDALVGGPAQLTDEEKYRDCERFKFCCLKCGTEN 1315

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCP-EEVEAGRISPGMIANQVKRQA 1391
             +D    CS   +  S    +P  +       RC K   EE     +    + N++    
Sbjct: 1316 IYDNVFDCSGRFIEPSLXFIEPSLQ-------RCSKSECEEPPFNHVV--QMNNKLLLDI 1366

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADL 1450
               +  YY G ++C++ TC+  T  L L     +  G +C     C   ++R +Y+   L
Sbjct: 1367 RRHLKRYYSGWLICEEPTCQNRTRRLPLSF---SRSGPIC---QACRKAILRPEYSAKAL 1420

Query: 1451 YKQLTYFCHLLDTQRGIEKM 1470
            Y QL ++ ++ D +  ++K+
Sbjct: 1421 YTQLCFYRYIFDVEYAMDKV 1440


>gi|443732880|gb|ELU17443.1| hypothetical protein CAPTEDRAFT_228337 [Capitella teleta]
          Length = 1425

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1256 (39%), Positives = 692/1256 (55%), Gaps = 146/1256 (11%)

Query: 243  EESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAG 302
            E+  +L  ES + + +   D+F+     V+D+     K  +K N+ + TE  P   + A 
Sbjct: 264  EDLGDLSQESMDVSGIDFEDDFLPAAPTVQDK-----KAGEKKNSSVLTEL-PDFHSNAT 317

Query: 303  WKEVSGG------NMVLDEGKSGLNCQESEFEVDDDGS--LPFYILDAHEQLSGANMGTL 354
            W EV+ G      ++V+D  K  L         +DDG   L  + LDA+E       G +
Sbjct: 318  W-EVNKGASDIPVDVVVDSSKLPLI-------TNDDGEQVLRMFWLDAYED-QYKQPGVV 368

Query: 355  YLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFR 412
            YLFGKV   +  THH                      +T E              P+ F 
Sbjct: 369  YLFGKVWIDSAKTHH---------------------LKTKE--------------PVTF- 392

Query: 413  KKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
                   + L  E ++ + +   +  Y    V++ YAF  A+IPA   Y L++ YP +  
Sbjct: 393  -------IDLYQEFSDAVADKYKIMKYKSLKVEKEYAFDIADIPAQSEY-LEVRYPAEHS 444

Query: 472  PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV 531
             LP DLKG+ F  + GT +S+LELFL++R +KGP WL I K      P  +SWCK E  V
Sbjct: 445  ALPNDLKGDTFSHIFGTTTSSLELFLIERGLKGPRWLDI-KLPQLSHPP-ISWCKVEALV 502

Query: 532  DSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
              P  IRV S+S        + V A+NL+TV N +   NEI+  S +  H+  +D     
Sbjct: 503  TQPDYIRVLSASPPPPPP--LVVMALNLRTVSNPKTHQNEIIGVSCLVHHRFPLD----- 555

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
             +  +P    HF  + K    IFP  F  +     +KA    +   SSERALL  L+ + 
Sbjct: 556  KQAPQPPYQQHFVAISKPSDCIFPYDFKDQVNLPKNKAMRIEMM--SSERALLGFLLAKF 613

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
             K+D DV+VGH++ GFD+DVLLHR    +VP   WS++GRLK+S MPKL       GS  
Sbjct: 614  NKIDPDVIVGHDVFGFDVDVLLHRLSHNKVPH--WSRLGRLKKSAMPKLS---NTHGSKG 668

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD-RKEVGPHDVLKMFQTLE 770
            +P   + ++GRL+CD  + +++L+R  SY LT+L    L  + R E+    +L  +    
Sbjct: 669  APS-STAVSGRLVCDVKISAKELIRCRSYDLTELVFQVLKGEKRSEIDGDQILSYYNNSA 727

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
             L+ ++E    DA     L+  L++LPL  Q+TNI GN+  +TL G RA+R E+LL HAF
Sbjct: 728  HLLSMVEMTLVDATFIQRLLCELNILPLALQITNICGNIMARTLMGGRAERNEFLLNHAF 787

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
              K +IVPDK  Y K+T  A            V+ + + D   D+D+      + +R PA
Sbjct: 788  TEKGFIVPDK-VYGKKTNAA------------VQPVVDPDDEIDHDSGKKTQSQ-RRKPA 833

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------DGLVPHLP 943
            YAGGLVLEPKKG YD YILLLDFNSLYPSIIQEYNICFTT+ R         D ++    
Sbjct: 834  YAGGLVLEPKKGFYDTYILLLDFNSLYPSIIQEYNICFTTIGRDTAAKDDEEDAVMECPD 893

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
             S   G+LP  ++ LVQ RR VKT MK    S     Q DI+Q+ALKLTANSMYGCLGF+
Sbjct: 894  PSLEPGILPTEIRKLVQSRRQVKTMMKNPDLSPDLYMQYDIRQKALKLTANSMYGCLGFT 953

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            +SRFYAKPLA L+T +GREIL  T DLVQN +NL+VIYGDTDSIM++S   ++ +   + 
Sbjct: 954  HSRFYAKPLAALVTAKGREILMKTKDLVQN-MNLDVIYGDTDSIMVNSNSTNMEEVFKLG 1012

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDMVRR 1120
             KV  EVNK Y+ LEID+DG+YK MLLLKKKKYAA+ +  K+G  Y+ + E KGLD+VRR
Sbjct: 1013 NKVKTEVNKLYRLLEIDIDGVYKCMLLLKKKKYAALNM-VKNGDKYDAVREMKGLDIVRR 1071

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DW  L+KE G F + QILS  S E+VVE+IH  LM+V E ++ G V ++ Y ITK+LTK 
Sbjct: 1072 DWCELAKEAGKFVVDQILSGSSRENVVENIHAKLMEVGELVKGGDVPIDLYYITKSLTKN 1131

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
            PE YPD K+ PHVQVALRL   G      +GDTV Y+IC       GS++  +QRA HPD
Sbjct: 1132 PEDYPDKKSLPHVQVALRLNSKG-GRKLRSGDTVYYVIC-----QDGSNLAPSQRAYHPD 1185

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
            EL K +    ID  YY S Q+HPVVSRLC  I+GT   R+A+CLGLD S ++   +    
Sbjct: 1186 ELTKRE-DLKIDTHYYLSHQVHPVVSRLCDPIDGTDSARIAECLGLDASGYRRAATR--- 1241

Query: 1301 SDPSSSLLFA--VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
             D   +LL A  + +EER+  C+ L++ CP CS      +  + +   + E P+      
Sbjct: 1242 DDEEDALLGAAQLSEEERFMNCDRLLIKCPKCSRDIVLDSPIAGMKNPLLECPN------ 1295

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
                    P+C   + A R    +I N +       +  YY+G + C+D  C   T +L+
Sbjct: 1296 --------PQCKLCI-ADRSHAHVIRNALTVAIRKHIQKYYEGWLHCEDVQCGLRTRNLS 1346

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA 1474
            L     A+   VC    R  G L+ +YT+  LY QL ++ ++L+ +      ++SA
Sbjct: 1347 LIF---AKGIPVCHQCQR--GFLITEYTDTMLYDQLCFYRYVLEDKTDSSDSKLSA 1397


>gi|390594500|gb|EIN03911.1| DNA polymerase alpha catalytic subunit [Punctularia strigosozonata
            HHB-11173 SS5]
          Length = 1473

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1230 (38%), Positives = 685/1230 (55%), Gaps = 132/1230 (10%)

Query: 316  GKSGLNCQESEFEV-DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            G + ++   S FEV +DDGSL F+ LD  E     + G LY  GK+K  ++    S CV 
Sbjct: 338  GSTKMSSNSSNFEVLEDDGSLRFFWLDYME-----HEGKLYFIGKLKEKTSGQWVSICVT 392

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            ++N+QR ++ +P          +++E+D E+  +       ++ DV      +I  Q   
Sbjct: 393  IENLQRNLFVLPRA--------LRVEQD-EDGNLVETDVPVEMSDVYSDFD-QIRQQA-- 440

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
              + ++   PVKR+YAFG+ ++P  E   LK+ YPF++P +P+ +   NF  + GT+++A
Sbjct: 441  -GIKSWRCKPVKRKYAFGEPDVPRDEAEWLKVVYPFEEPTIPSTVSSPNFSRIFGTNTTA 499

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQR--VSWCKYEITVDSPKDIRVSSSSKHVA--E 548
             EL ++KRK+ GP WL+I      P  +   +SWCK E TV  PKDI   + S   A  +
Sbjct: 500  FELLVLKRKIMGPCWLNIKH----PKVEHKGISWCKVEATVSDPKDINPFAESDADAPKD 555

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             PP+T+T+++L+T+ N +++  EIV A+       +ID P    +       +  T VR 
Sbjct: 556  TPPLTITSLSLRTIVNHKENKREIVCATARIWSNIQIDDPTPPEQLP----CTVHTFVRP 611

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            L  G FP  F      R    G  V+   ++ER LL+ L++ ++K D DV VGH   G  
Sbjct: 612  L--GRFPPNFEA----RAKANGKGVISPMANERMLLSSLLVTIHKADPDVFVGHEFLGVS 665

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            LDVLL+R +  +  +  WS+I R +RS  P +  GR   GS      +  +AGR+LCD  
Sbjct: 666  LDVLLNRMKELK--ADHWSRISRFRRSRWPNI--GRQ--GSN-----LRFLAGRMLCD-- 712

Query: 729  LCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGET 781
            L S   + ++   ++SLT++ KT L  DR+++ P D    F     + + L+  + + E 
Sbjct: 713  LASDGAKSMISSTTWSLTEMCKTHLKSDRQDIDPDDTAAYFDGSVSSPDRLLTFVRHCEL 772

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA   M +   + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK 
Sbjct: 773  DAHYQMAIASKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDK- 831

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
            T+ K+   A +    G +D N   +  +     +                   LV EPK+
Sbjct: 832  TWGKKAAAAVKAEAEG-DDPNGATVGGKGKGKRDKYKGG--------------LVFEPKR 876

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKTT-GVLPELL 955
            GL+DK+IL++DFNSLYPSIIQEYNI FTTVE   D       +P  P S T  GVLP L+
Sbjct: 877  GLWDKFILVMDFNSLYPSIIQEYNIDFTTVEPVEDDEDGEERIPDPPDSTTAQGVLPRLI 936

Query: 956  KNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
              LV RRR VK  MK  TAS  K+ Q DI+QQALKLTANSMYGCLGF  SRFYA+PLA L
Sbjct: 937  ATLVNRRRQVKALMKDKTASQAKLMQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAAL 996

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
             T +GREIL +T +L ++ L L+V+YGDTDS+ ++SG  D+A+A  IA    + VN++Y+
Sbjct: 997  TTFKGREILTATRELAES-LQLDVVYGDTDSVFVNSGATDLAEALKIAADFKKAVNERYR 1055

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             LEIDLDG+++R+LLL+KKKYAA+KV+  DG      E KGLDM RR++  LSK V  + 
Sbjct: 1056 LLEIDLDGIFQRLLLLQKKKYAAIKVE--DGTRTST-EVKGLDMKRREYCALSKNVSQYV 1112

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L QILS  + E VVE IH+ L  + +++R G++ L+ +++ K L K PE YPDAK+QPHV
Sbjct: 1113 LEQILSGEATEIVVEQIHDYLTTIGQNVREGKIKLDDFIVFKRLGKNPEDYPDAKSQPHV 1172

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS-VGIAQRARHPDELKKGDGKWMID 1252
            QVALR+K  G +    +GD +PY+ C   G S  SS  G A +A+HPDE++KG     ID
Sbjct: 1173 QVALRMKTRGGT--ARSGDVIPYVFCL--GASGESSKTGQADKAKHPDEVRKGGKDCQID 1228

Query: 1253 IDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVG 1312
             +YY SQQ+ P + RLC  IEGT   RLA+CLGLDP +F++  S  +     ++L   + 
Sbjct: 1229 YEYYLSQQVLPPIERLCEPIEGTDRARLAECLGLDPGRFRTSTSGEVQEHVFTTLDSQMS 1288

Query: 1313 DEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEE 1372
            D ER++  +P ++ C  C        V       +   PS PE          CP C   
Sbjct: 1289 DAERFKDTDPFVVRCRKCEGQIAFAPVADRTASLLL--PSGPE----------CPAC--- 1333

Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCP 1432
                 ++   +  Q+  Q    ++ YY+G ++C+D+TC   T     R++G   R  +  
Sbjct: 1334 --KAPMTTASLQVQLDTQIRAHIARYYEGWIVCNDQTCGMRT-----RMMGVYARTCLRK 1386

Query: 1433 NYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ------RGIEK---MEISAKIPLEKELN 1483
            +   C   +  +Y++A+LY QL  +  L D Q      RG++K   MEI     ++  L 
Sbjct: 1387 D---CTSTVAFEYSDAELYNQLRMYHSLFDQQKIIKAARGMDKDKLMEIDTLCTMQAGL- 1442

Query: 1484 KIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                 +     TV++   +    WV ++ +
Sbjct: 1443 -----LQTLLDTVEKYMLQSGRRWVDMSSL 1467


>gi|334329499|ref|XP_001365174.2| PREDICTED: DNA polymerase alpha catalytic subunit [Monodelphis
            domestica]
          Length = 1462

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1511 (35%), Positives = 800/1511 (52%), Gaps = 173/1511 (11%)

Query: 8    VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            +A R R     A  R EALERLK  + G R       Y ++    +YD V ED+Y  +V 
Sbjct: 16   LASRSRREKKSAKGRQEALERLKKAKAGER-----FKYEVEDFTSVYDEVDEDQYSRMVQ 70

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN 127
             R+++     VDDDG GY ++G+E         +    +   G ++ K ++  K+     
Sbjct: 71   ARQDDDWI--VDDDGTGYVEDGREIFDDELDDDAFDVSKKGKGDKASKDKKNIKKAV--- 125

Query: 128  NQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEA 187
               V KPN   +   A  GK+      T+  +   SKD+ + +    ++    +  P   
Sbjct: 126  ---VSKPNNIKSMFMASAGKK------TTDKVVDLSKDDLLGDILQDLNSSTPQITPPPV 176

Query: 188  DRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKE 247
               +++R   +++  F SV   K  + L  N     +  S +    V +++ D +     
Sbjct: 177  MMLKKKRPTGASLNPF-SVQIPKA-TPLGKNDVPISRRESPV--TLVDLKHADYMA---- 228

Query: 248  LKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEK-------------- 293
             K   + ++E  + D  ++ ++   DE  ED +E   L   I T++              
Sbjct: 229  -KPSDEEASEEEEEDGLMDFEDGDFDEPMED-EEADSLPKAIKTQEEEKEQEKNVEPESS 286

Query: 294  --DPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFYILDA 342
              D  L   + W ++        E +S L  QE + +          D D    FY LDA
Sbjct: 287  HLDSFLPDVSCWDKMD------QEDESSLRTQEIQVDSNHLPLVKGADGDQVFLFYWLDA 340

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
            +E       G ++LFGKV  ++  TH SCCV+VKN++R ++ +P          ++++  
Sbjct: 341  YED-QFNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLHLLPRE--------VRIDLA 391

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
              E + +P+     ++DV      + A +     +  +    V++ YAF   ++P    Y
Sbjct: 392  TGEKKGNPVT----MKDVYQEFDEKTATKY---KIMKFKSRKVEKNYAFEIPDVPEKSEY 444

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             L++ Y  + P LP DLKGE F  + GT++S+LELFL+ R++KGP WL I        P 
Sbjct: 445  -LEVRYSAELPQLPQDLKGETFSHVFGTNTSSLELFLMNRRIKGPCWLEIKNPQLLNQP- 502

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
             +SWCK E     P  + V    K +A  PP+ + + +LKT+ N +   NE+++ + +  
Sbjct: 503  -ISWCKVEAMALKPDLVNVV---KDIAP-PPLVIMSFSLKTMQNAKTHQNEVIALAALIH 557

Query: 581  HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSE 640
            H   +D         +P   SHF VV K +  IFP  F +    +N       +   ++E
Sbjct: 558  HSFPLDKAA-----PQPPFQSHFCVVSKPNDCIFPYDFKEVINKKNVN-----IEIAATE 607

Query: 641  RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL 700
            R LL   + +++K+D DV+VGHNI GFDL++LL R  VC+VP   WSKIGRLKRS MPKL
Sbjct: 608  RTLLGFFLAKVHKIDPDVIVGHNIYGFDLEILLQRINVCKVPH--WSKIGRLKRSIMPKL 665

Query: 701  RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPH 760
              GR  F    +    +C  GR++CD  + +++L+R  SY L++L    L  +R+ + P 
Sbjct: 666  -GGRGGFAERNA----AC--GRMICDVEISAKELIRCKSYHLSELVHQILRTERETIPPE 718

Query: 761  DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            ++  M+     LM L+E    DA   +++M  L+VLPL  Q+TNI+GN+  +T+ G R++
Sbjct: 719  NIRNMYSDSRHLMYLLENTLKDAKFILQIMCELNVLPLALQITNIAGNVMSRTMMGGRSE 778

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            R E+LLLHAF    YIVPDK  + K     +QR            L +ED + D DT  N
Sbjct: 779  RNEFLLLHAFYENNYIVPDKQNFRK----PQQR------------LGDEDEDIDGDT--N 820

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--SPDGL 938
              +KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R  S D  
Sbjct: 821  KSKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEDQK 880

Query: 939  ---------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQA 986
                     +P LP      G+LP+ ++ LV+RR+ VK  MK    +   + Q DI+Q+A
Sbjct: 881  ITEDEEQEDIPDLPDPDLEMGILPKEIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKA 940

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIM
Sbjct: 941  LKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTDSIM 999

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGM 1105
            I++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG 
Sbjct: 1000 INTNSTNLEEVFKLGNKVKSEVNKLYKMLEIDIDGIFKSLLLLKKKKYAALVVEPTSDGK 1059

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                 E KGLD+VRRDW  L+KE G+F + QILS+++ + +V++I   L+++ E++ +G 
Sbjct: 1060 YVTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQNRDTIVDNIQKRLIEIGENVTNGS 1119

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V + K+ I K LTK P+ YPD K+ PHV VA+ +   G      AGDTV Y++C      
Sbjct: 1120 VPISKFEINKALTKDPQDYPDKKSLPHVHVAIWINSHG-GKKVKAGDTVSYVVC-----Q 1173

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
             GS++  +QRA  P++LKK D    ID  YY SQQ+HPVV+R+C  I+G     +A  LG
Sbjct: 1174 DGSNLSASQRAYAPEQLKKQDN-LAIDTQYYLSQQVHPVVARICEPIDGIDAALIATWLG 1232

Query: 1286 LDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
            LDP++F+    +    D  +  L      + DEE+YR CE    SCP C +   C  V  
Sbjct: 1233 LDPTQFRV--HQHYHKDEENDALLGGPAQLSDEEKYRDCERFKFSCPKCGTENICDGVFD 1290

Query: 1342 SICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS-PGMIANQVKRQADGFVSMYYK 1400
                 +  +PS            RC  C  + +A  ++    + N++       +  YY 
Sbjct: 1291 GSGTQI--EPS----------LFRC--CNIDCKASPMTFTDQLNNKLILDIRRCIKKYYS 1336

Query: 1401 GLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCH 1459
            G ++C++ TC+  T  L L+    +  G +C     C    +R +Y++  LY QL ++ +
Sbjct: 1337 GWLICEEPTCQTRTRRLPLQF---SRSGPLCQT---CMKATLRPEYSDKSLYTQLCFYRY 1390

Query: 1460 LLDTQRGIEKM 1470
            + D     EK+
Sbjct: 1391 MFDLDSAQEKL 1401


>gi|410988300|ref|XP_004000424.1| PREDICTED: DNA polymerase alpha catalytic subunit [Felis catus]
          Length = 1462

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1514 (34%), Positives = 789/1514 (52%), Gaps = 159/1514 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   LSDSGSFVASRSRREKKSKRGRQEALERLKRAK-----AGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++    IVDDDG+GY ++G+E              +S +  +  K +  +
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGRE---IFDDDLEDDALDSYEKGKDEKARTKD 119

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            +R  K+    V KPN   +   A  GK+      T+      SKD+ + +    ++    
Sbjct: 120  RRNVKKTV--VTKPNNIKSLFIASAGKK------TADKAVDLSKDDLLGDILQDLNTETP 171

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLIN 231
            +         +++RS+  ++  F SV++ K      T S  S KE          ++   
Sbjct: 172  QITLPPVMIPKKKRSIGDSLNPF-SVHTPKAVPSRKTASPVSRKEPPLTSVPLKRAEFAG 230

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIST 291
                    D  ++S  + +E  +  E  + +  V+V+       +++ +  + +  +   
Sbjct: 231  ESGPALCIDDKKDSGTMNFEDGDFDEPMEAEE-VDVEPMAVKTWDQESEPAEGVKHEADP 289

Query: 292  EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLP------------FYI 339
             K PL    +   +VS  + +  E  S  + QE +    D G LP            FY 
Sbjct: 290  GKGPLSYLGSFLPDVSCWD-IDQEDDSSFSAQEVQV---DSGHLPLVKGADEEQVFQFYW 345

Query: 340  LDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKL 397
            LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P       +  + L
Sbjct: 346  LDAYED-QYTQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPR------ETKIDL 398

Query: 398  EKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAG 457
                E   +  M      +DV      +IA +     +  +    V++ YAF   ++P  
Sbjct: 399  NTGKETETLVTM------KDVYDEFDEKIAAKY---KIMKFKSKQVEKNYAFEIPDVPEK 449

Query: 458  ENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCP 517
              Y L++ Y  + P LP DLKGE F  + GT++S+LE+FL+ RK+KGP WL +       
Sbjct: 450  SEY-LEVRYAAEMPQLPQDLKGETFSHVFGTNTSSLEIFLMNRKIKGPCWLEVKNPQLLN 508

Query: 518  APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASV 577
             P  VSWCK E     P  + V    K V   PPV V ++++KT+ N +   NEI++ + 
Sbjct: 509  PP--VSWCKVEAVALKPDLVNVI---KDVGP-PPVVVMSLSMKTMQNAKTHQNEIIAVAA 562

Query: 578  VCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCE 637
            +  H  ++D         +P   SHF V+ K    IFP  F ++   +N K         
Sbjct: 563  LVHHSFELDKAP-----PQPPFQSHFCVISKPKDCIFPYAFKEDIKKKNVKVE-----IA 612

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER LL   + +++K+D DV+VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS M
Sbjct: 613  ATERTLLGFFLAKVHKIDPDVIVGHNIYGFELEVLLQRINVCKVP--YWSKIGRLKRSNM 670

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PKL       G  +  G  +   GR++CD  + +++L+R  SY L++L +  L  +R  +
Sbjct: 671  PKL-------GGRSGLGERNATCGRMICDVEISAKELIRCKSYHLSELVQQVLKSERVVI 723

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
               ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G 
Sbjct: 724  PVENIRNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGG 783

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            RA+R E+LLLHAF    YIVPDK  + K  +                             
Sbjct: 784  RAERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDLD------------------G 825

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
              N ++KG++  AYAGGLVL+PK GLYDK+ILLLDFNSLYPSIIQE+NICFTTV+R    
Sbjct: 826  DANKYKKGRKKAAYAGGLVLDPKAGLYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 885

Query: 934  ----SPDG---LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQ 983
                + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q DI+
Sbjct: 886  AHKATEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIR 945

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTD
Sbjct: 946  QKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTD 1004

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FK 1102
            SIMI++   ++ +   +  KV  EVNK Y+ LEID+DG++K +LLLKKKKYAA+ V+   
Sbjct: 1005 SIMINTNSTNLEEVYKLGNKVKSEVNKLYRLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1064

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG      E KGLD+VRRDW  L+KE G+F L QILS++S + +VE+I   L+++ E++ 
Sbjct: 1065 DGNYITKQELKGLDIVRRDWCDLAKETGNFVLGQILSDQSRDTIVENIQKRLIEIGENVL 1124

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC   
Sbjct: 1125 NGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC--- 1180

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
                GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A 
Sbjct: 1181 --QDGSNLSASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIAT 1237

Query: 1283 CLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
             LGLD ++F+         D  +  L      + DEE+YR CE     CP+C +      
Sbjct: 1238 WLGLDSTQFR---VHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1288

Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
               +I  SV +  S  + E + +R   + C   P            ++N++       + 
Sbjct: 1289 --ENIYDSVFDG-SGTDIEPSLYRCSNIDCKASPLTFMV------QLSNKLIMDIRRCIK 1339

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             YY+G +MC++  C+  T  L L+   +     VC         L  +Y++  LY QL +
Sbjct: 1340 KYYEGWLMCEEPACRNRTRRLPLQFSRNGPLCQVC-----MKATLRPEYSDKSLYTQLCF 1394

Query: 1457 FCHLLDTQRGIEKM 1470
            + ++ D    +EK+
Sbjct: 1395 YRYIFDADCALEKL 1408


>gi|328857126|gb|EGG06244.1| hypothetical protein MELLADRAFT_48531 [Melampsora larici-populina
            98AG31]
          Length = 1159

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1178 (37%), Positives = 665/1178 (56%), Gaps = 117/1178 (9%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            +L F+ LD  E       G +YLFGKV  K  ST+ +CCV+V+ M+R ++ +P       
Sbjct: 33   NLKFFWLDYLEV-----EGVIYLFGKVLNKLTSTYVTCCVIVEGMERNLFVLPK------ 81

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
             E ++ E D E   + P        DV      +I + L    ++ +    VKR+Y F +
Sbjct: 82   -ETIRDEDDVE---VKPTE-----DDVY----DDIEDVLQKYGIAEFKAKVVKRKYCFEE 128

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
              IPAGE+   K+ Y F  P +P + K   F  +LGTHSSA ELFL+KR++ GP WL++ 
Sbjct: 129  KGIPAGEHEWHKVVYSFSKPAIPLNTKSRTFGKVLGTHSSAFELFLLKRRIMGPCWLNLK 188

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTVFNKRQDV 569
                  +    SWC+ E+ + +PK I   S S   A  ++PP+ + +++++ + N +++ 
Sbjct: 189  GALPNKSKTPASWCQLEVVIKNPKSINPFSDSDSSAPQDLPPLRIISLSVRDIMNHKENK 248

Query: 570  NEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
             E+V A++   H A+++  TP+     ++P     F  VR L   +FP  F         
Sbjct: 249  RELVCATIRTWHDAQLEDSTPLD----QQPSFTKTF--VRPL--SLFPAAFRDAC----- 295

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            +  S V+   ++E+ LL  L+ ++ +LD D++VG++++   LDVLLHR +  R P   WS
Sbjct: 296  RQTSPVIYPVTNEQTLLTELLADISRLDPDIVVGYDLTSGALDVLLHRMRDLRTPH--WS 353

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS---YSLTQ 744
            +IGR +R ++P LR G           I + + GRLLCD  L +      VS   +SLT+
Sbjct: 354  RIGRFRRDKLPLLRSG----------AINNQLTGRLLCD--LSAEGFKSSVSSTTWSLTE 401

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFHLSVLPLTR 800
            L +  LN  R+++ P +++  F +  +    L+  I++ E D +  M L+  +  L LT+
Sbjct: 402  LCQQHLNIAREDIDPDEIIDYFDSTSTKPTRLINFIKHSEADTYFQMALVHKVQYLSLTK 461

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            QLTN++GN W  TL G RAQR EY+LLH F  +K+I PDK ++     + K ++      
Sbjct: 462  QLTNLAGNSWNATLFGGRAQRNEYILLHEFHRQKFICPDKLSFNDRKAIEKAQA------ 515

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                          ++    D +K  +   Y GGLV EPK+GL+DK+IL++DFNSLYPSI
Sbjct: 516  ------------IKSENDGEDGKKNVKKDKYKGGLVFEPKRGLWDKFILVMDFNSLYPSI 563

Query: 921  IQEYNICFTTVERS------PDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTAS 973
            IQEYNI FTT++R+      PD + P LPSS T  G+LP L+  LV RRR VK+ MK   
Sbjct: 564  IQEYNIDFTTIDRTTLDEDDPDAM-PELPSSSTKQGILPRLIATLVNRRRQVKSLMKDRD 622

Query: 974  GL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
                K+ Q +I+Q ALKLTANSMYGCLGF  SRFYA+ LA L T +GREIL +T +L ++
Sbjct: 623  TPPNKMIQYEIKQLALKLTANSMYGCLGFEGSRFYARSLAALTTYKGREILTNTRELAES 682

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
              +L+VIYGDTDS+MI++   D A AK I G+  + VN++Y+ LEID+D +++RMLLL+K
Sbjct: 683  K-DLDVIYGDTDSVMINTNAIDFAAAKKIGGEFKKLVNERYRLLEIDIDAVFERMLLLQK 741

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KKYAA+K+   +    + +E KGLDM RR++  LSK+   + L  +LS    E VVE +H
Sbjct: 742  KKYAALKID--EVTLQKSVEVKGLDMKRREFCKLSKDASQYILQHVLSGDPTEIVVEKMH 799

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
              L ++ ED++ G+  LE ++I K L K P+ YPDAK+QPHVQVALR++  G S+   AG
Sbjct: 800  EYLTQLGEDVKEGRKDLEDFIIHKKLGKNPKDYPDAKSQPHVQVALRMESKG-SSAAKAG 858

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D +PYI C     SS +    A +ARHPD+L++ D  W ID DYY S Q+ P + RLC  
Sbjct: 859  DVIPYIFCLGDDGSSSTRSAQADKARHPDDLRRSDSPWKIDYDYYLSLQVLPPIERLCEP 918

Query: 1272 IEGTSPERLADCLGLDPSKFQSK-PSETMSSDPSSSLLFA-VGDEERYRGCEPLILSCPS 1329
            IEGT   RLA+CLGLDPS+F++   S  + +D     L + + D ER++  +P  L C S
Sbjct: 919  IEGTDRSRLAECLGLDPSRFKTHTSSNALDNDREFHTLDSQIPDSERFKDSQPFKLRCRS 978

Query: 1330 CSSTFDCP-AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVK 1388
            C    D   A   ++C      P +          +    CP  V   R S G +  Q++
Sbjct: 979  CHEESDFKGAQADTVC------PFQKLGMIGISGII----CPNLVCKQRYSIGSMVAQLE 1028

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-CNGRLVRKYTE 1447
             Q  G+++ +Y+  ++CDD +C+  T  +++        G  C N    C G +  +YT+
Sbjct: 1029 IQIRGYINKFYEAWLVCDDASCRNRTRMMSV-------YGRRCLNSSMACKGVMSYEYTD 1081

Query: 1448 ADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKI 1485
              LY Q+ Y+  L D  + IE+ + + K  L   + K+
Sbjct: 1082 KMLYDQILYYQSLFDPDKAIERFKGTDKSELTANILKV 1119


>gi|403341362|gb|EJY69984.1| DNA polymerase alpha catalytic subunit [Oxytricha trifallax]
          Length = 1517

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1566 (32%), Positives = 803/1566 (51%), Gaps = 200/1566 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D+    +GR   +     A   AL +L+A R GG +  D   Y +     I+D + +D
Sbjct: 1    MSDKYTTQSGREIKKAGRGDAAKGALAQLRAAREGGSKRTDQ--YQVDEAKKIFDEIDDD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            EYD +  +R+ +   FIVDDDG GY D G E  W         DD   DG          
Sbjct: 59   EYDKIQDQRKND--DFIVDDDGYGYRDHGGE-IWE-------RDDHPEDG---------- 98

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQ----RLSAMLTSTAMFKKSKDEKVKESESVID 176
              GKK+     RK +P+  +  A M  +    R  A+  S+A  K+      ++S+ +++
Sbjct: 99   --GKKKK----RKLDPNEQSITAFMKPKSTINRPGAVTNSSAQIKQKPKVSAEQSKDIMN 152

Query: 177  EVLAEFAPDEAD--RERRRRSVSSNIKSFVSVNS--VKTNSQLVTNSTNSVKENSDLINN 232
             +  E    + D  ++    +V + +   ++ N   + T+   VT  T    E   +   
Sbjct: 153  NLFQELDSKDVDELQDVNNSAVVTELNKPIAFNQNDMLTSKYAVTLETRQEVEQKRVTEQ 212

Query: 233  FVQIQNCDVVEES-----KELKWESDNSTELTKRDNFVEVKEKVKDEVNE-------DVK 280
                      ++S     K+ K+E  ++ +     +   V  +  D +N+       D K
Sbjct: 213  IQAQAQIGQNQQSSNPFSKKRKFEEISTNQNALASDSKRVSNQTNDNLNKSGNTSYFDAK 272

Query: 281  ECKKLNA--------------KISTEKDPLLSATAG--------------WKEVSGGNMV 312
              + LN               + S +K   +  T                W +V   N  
Sbjct: 273  SSESLNQSDFQSAMDDSMKIDQTSAQKKTQIEQTVNHSKTLETQSKSNDEWNQVRQQNFQ 332

Query: 313  LD------EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTH 366
             +      E   G N QE    ++++G+L FY +DAHE+ +G +   LY+FGK+      
Sbjct: 333  ANQELRNMEPSVGQNTQEFPLPLNENGTLSFYWIDAHEENNGTD---LYIFGKIYQPQVR 389

Query: 367  H--SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKT 424
               SC + V  MQR +YA+P     +    + +E++ E+ R   M    +L D+      
Sbjct: 390  QFVSCSMKVNGMQRELYALPKM-RGKARGALTVEEEKEQVRAVMM----ELDDIRKKRFP 444

Query: 425  EIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCS 484
            +I         S +   PV R+YAF +  I  GE+  LKI Y    PPLP+ ++G  F  
Sbjct: 445  QI---------SKWRCKPVNRKYAF-EMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFEC 494

Query: 485  LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK 544
            + G+  S LELF++KRK++GP W++I   +     ++ +WC+ EI +D+PK++ V+    
Sbjct: 495  IFGSTQSMLELFILKRKIRGPCWMTIKNPTKVTDFKK-TWCRQEIVIDNPKNVEVTLEDL 553

Query: 545  HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFT 604
            +  E+PP+T    + KT    +Q+ NEI  A + C     I+T +      +      FT
Sbjct: 554  NKQELPPLTSLTFSFKTT-RAQQNTNEI--AMISCL----INTNIAQEGPSQVERTQSFT 606

Query: 605  VVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
            ++RKLDG   P  F+++   R      N++    +ER ++   + +++ +D D++V HN+
Sbjct: 607  LLRKLDGKPMPYDFDQKVKQRKE----NIIQKFENERQMIEAFIAKVFIVDPDLVVAHNL 662

Query: 665  SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAG 721
             G   D+LL R Q  +V  + WS+IGRLK++++P  +    G +  GS   P  ++C  G
Sbjct: 663  CGGMFDLLLARIQYLKV--NHWSRIGRLKKTQIPNKKLDVGGSSYGGSQWIPRQVTC--G 718

Query: 722  RLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGET 781
            RLL DTFL +++L+RE SY LT LAK QL KDR++     +  ++ T E L  LI++ E 
Sbjct: 719  RLLVDTFLSAKELVRETSYDLTYLAKVQLKKDRQDFDDELLPTLYITSERLFSLIDHTEK 778

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L+++LM HL+++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD  
Sbjct: 779  DAYLTIQLMNHLAIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-- 836

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                     K+  N     RN+     E+A              ++  AYAGGLV+EPK 
Sbjct: 837  ---------KKAPNAKDFKRNMFADEFEEAEV---GKGPKKGGKRKKAAYAGGLVIEPKA 884

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGL------------------- 938
            G YD  ILLLDFNSLYPSIIQEYN+CFTTV R P    DG                    
Sbjct: 885  GFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEV 944

Query: 939  ----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANS 993
                +P    +    VLP +L++LVQ+R+ VK  MK     +K+ QL+I+Q+A+KLTANS
Sbjct: 945  EEADLPDKNVNVKDAVLPNVLRDLVQKRKAVKEKMKNEKDAVKLSQLEIRQKAIKLTANS 1004

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLGF +SRF+A+ +A LIT+ GR+ L  T D+ +N L   V+YGDTDSIMI++G + 
Sbjct: 1005 MYGCLGFGSSRFHAQAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQ 1064

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIER 1112
            + ++  +  ++  EVN  YKCLEI++DG++K +LLLKKKKYAA+K + F       V E 
Sbjct: 1065 LQQSLEMGKRLKAEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEV 1124

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            KGLDMVRRDW  LSK VG+F L+QILS +  EDVV +++  L  + E M++  + L++++
Sbjct: 1125 KGLDMVRRDWCPLSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFI 1184

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            ITK LTK    Y D K QPHV VA RLK  G S      + +PY+I  +    S ++  +
Sbjct: 1185 ITKQLTKAISEYSDIKGQPHVAVAQRLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPAL 1244

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ 1292
            A +A HP+E+    GK ++DI++Y + Q+ P ++RL   I+G   E +A CLG+DP K++
Sbjct: 1245 ADKAYHPEEVVSSKGKILLDIEWYITMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYK 1304

Query: 1293 SKPSETMSSDPSS-------SLLFAVGDEERYRG--CEPLILSCPSCSSTFDCPAVCSSI 1343
               SE  + + ++       + +     E   +G     L + CP CS ++  P +    
Sbjct: 1305 YHSSEKKTGETNNDDGTLIQNPILQTETERSLKGRTIAELTIKCPHCSESYHFPGIFQ-- 1362

Query: 1344 CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
                       + + N    L C KC +      I    I N+V       +++YY+G  
Sbjct: 1363 -----------DGKNNALSGLLCIKCTQP-----IPEAYIQNRVTLFLKQLLTLYYQGNK 1406

Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463
             C +  C     +++ +L+ + +    C N   C G+++ +YTE      L Y   L + 
Sbjct: 1407 QCQEPAC----GAVSRQLLYNNK----CINLA-CKGKMIPEYTEQKTNDTLRYLQGLFNV 1457

Query: 1464 QRGIEK 1469
            ++ I++
Sbjct: 1458 KKYIQE 1463


>gi|47118293|gb|AAT11258.1| DNA polymerase alpha [Uroleptus sp. WJC-2003]
          Length = 1502

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1565 (32%), Positives = 801/1565 (51%), Gaps = 202/1565 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D+       R  + A     ++A+ +L+A R GG++  D   Y +     I+  + ++
Sbjct: 1    MSDQTYTTQFGREIKKAGKRDTSDAISQLRAAREGGQKRTDQ--YQVDEAKKIFADIDDE 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            EY+ L  +R+ +   FIVDD+G GY D G E  W V        D   +G    KK+R  
Sbjct: 59   EYERLQDKRKND--DFIVDDEGFGYRDFGGE-IWEVG-------DTKEEG---AKKKR-- 103

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
             R    N Q++     +     + + K++  ++  S     K  +E+ K+   +++++L 
Sbjct: 104  -RKLDPNEQSI----TNFMMPLSTIPKKKNQSINNSIQQKPKISEEQQKD---IMNDLLQ 155

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNS--------------------- 219
            EF   +AD E    +V+  +       +     +L+                        
Sbjct: 156  EFDQKDAD-ELEDINVAKVMADLNQPIAFSKEEELINKYNFTLEARQIADEKRMGEQQQI 214

Query: 220  -TNSVKENSDLINN---FVQIQNCDVVEESKELKW--ESDNSTELTKRDNFVEVKEKVKD 273
             + ++++N++  +    F  I N    E+ +  K   +S N++    + N  +++     
Sbjct: 215  MSGTMQQNTNPFSKKRKFDDISNTTSAEKKQFQKNHPQSSNTSYFDAKSNQSQIQSDDYQ 274

Query: 274  EVNEDVK--ECKKLNAKISTEKDPLLSATAG---------WKEVSGGNMVLD------EG 316
               +D K  E K++  ++     P +  T+          W ++   N  ++      + 
Sbjct: 275  SAFDDSKMLESKQIEQQVQQTVKPQIPPTSNSTTPLKNDDWNQLKQQNFQMNNEFKHIDS 334

Query: 317  KSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVK 374
             + +N Q+     + DG+L FY +DAHE+ +GA+   LY+FGK+         SC + V 
Sbjct: 335  SAAINAQDYPVPYNADGTLSFYWIDAHEENNGAD---LYVFGKIFQPEVKQFVSCALKVN 391

Query: 375  NMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN 434
             MQR +YA+P     QT +        EES        K+++ V L L  +I  +  +  
Sbjct: 392  GMQREIYALPK----QTGKARGTLTKEEES--------KQVRAVQLEL-DDIRKKRFS-G 437

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALE 494
            ++ +   PV R+YAF +  I  GE+  LKI Y    PPLP +L G++F  L  T+ S LE
Sbjct: 438  ITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDSTMPPLPTNLTGQSFECLFNTNQSMLE 496

Query: 495  LFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            L ++KRK+KGP W++I K +      + +WC+ EI++D+PK+I ++    +  EVPP+T 
Sbjct: 497  LLILKRKIKGPCWMTI-KNAQKVVDFKKTWCRQEISIDNPKNIEITLDDLNRQEVPPLTS 555

Query: 555  TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
               + KT    + + NEI   S +  +    D    A +++        T++RKLDG   
Sbjct: 556  LCFSFKTT-RSQNNTNEIAMISCLVHNNVNQDGLTQAEKFQT------LTLLRKLDGMPL 608

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            P  F K    R        +   ++E+ ++   +  ++ +D D+L+ HN+ G   D+LL 
Sbjct: 609  PFDFEKRLKQRQDN-----IQVFTNEKQMIEAFISRMHLIDPDLLIAHNLCGGMFDLLLA 663

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            R Q+ +V  S WS+IGR K++ +P  +    G    GS   P  ++C  GRLL DTFL +
Sbjct: 664  RIQLLKV--SHWSRIGRFKKANIPNKKFDTGGANYGGSQWIPRQVTC--GRLLVDTFLTA 719

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            ++L+RE +Y LT L + QL K+R +     + K + + + L +++E+ E DA+ + +LM 
Sbjct: 720  KELIRETNYDLTHLTRVQLKKERVDYDDDRLPKFYMSTDLLFQIVEHTEKDAYFTFQLML 779

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK     +   AK
Sbjct: 780  HLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK-----KPPNAK 834

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG--KRGPAYAGGLVLEPKKGLYDKYIL 909
                 G+     EE             +++ RKG  ++   YAGGLV+EPK G YD  IL
Sbjct: 835  D-FKRGMLGEEFEE-------------NDNKRKGPKRKKAQYAGGLVIEPKAGFYDNIIL 880

Query: 910  LLDFNSLYPSIIQEYNICFTTVERSP----DG------------------LVPHLPSSKT 947
            LLDFNSLYPSIIQEYN+CFTTV R P    DG                      LP    
Sbjct: 881  LLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSEIKNQFKIQDDDENEEEEQSDLPDKNV 940

Query: 948  T---GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
                 VLP +L++LVQ+RR VK  MK     +K+QQL+I+Q+A+KLTANSMYGCLGF +S
Sbjct: 941  NLKDAVLPNVLRDLVQKRRAVKDKMKNEKDQIKLQQLEIRQKAIKLTANSMYGCLGFGSS 1000

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RF+A+ +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + +A  +  +
Sbjct: 1001 RFHARAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNILQQALEMGKR 1060

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDMVRRDW 1122
            +  EVN  YKCLEI++DG++K +LLLKKKKYAA+K +       +VI E KGLDMVRRDW
Sbjct: 1061 LKVEVNGFYKCLEIEIDGVFKSLLLLKKKKYAALKYEGYGSPDVKVIQEMKGLDMVRRDW 1120

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              LSK VG++ L QILS +S E+VV +++  L  + E M+S ++ L++Y+ITK LT+   
Sbjct: 1121 CPLSKTVGNYVLGQILSGKSREEVVMNLNEYLSDIGERMKSNRITLDQYIITKQLTRAIA 1180

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y D K QPHVQ+A RLK+ G S     G  +PY+IC E    S ++ G+A RA HPDE+
Sbjct: 1181 DYNDIKGQPHVQIATRLKKQGKSEADLVGGFIPYVICTETFEPSKTNPGLADRAYHPDEV 1240

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSD 1302
                GK  +D ++Y +QQI P ++RL   I+G   E +A CLG+DP K++   SE    D
Sbjct: 1241 ASSKGKVQLDNEWYITQQILPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYH-SEKKRDD 1299

Query: 1303 PSSS----------LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPS 1352
             +            L        + R    L + CP C   +  P +   I    S    
Sbjct: 1300 GADGNDMGQIQNPILQTETEKSLKNRSIAELKVKCPYCQEQYSFPGIYQEIKKEAS---- 1355

Query: 1353 KPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKY 1412
                       + C KC +     ++    + N++       + +YY G   C + +C  
Sbjct: 1356 ----------GMNCIKCNK-----KLPQQYVMNRINLFLKQLLVLYYSGNFNCSETSCNN 1400

Query: 1413 TTCSLNLRLIGDAERGTVCPN---YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
              C           R  +  N    P C G+++ +YTE+     L Y   L + ++ I +
Sbjct: 1401 KDC-----------RQLLVNNKCIIPTCKGKMIAEYTESQTNDTLRYLQGLFNLKKYIHE 1449

Query: 1470 MEISA 1474
             + +A
Sbjct: 1450 QKKTA 1454


>gi|432930030|ref|XP_004081285.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Oryzias
            latipes]
          Length = 1460

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1513 (35%), Positives = 779/1513 (51%), Gaps = 185/1513 (12%)

Query: 11   RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
            R R    E   R  ALE+LK  + G     + + Y ++  + +Y+ V E++Y  LV  R+
Sbjct: 29   RSRREKREKVGRKSALEQLKKAKMG-----EKIKYKVEEFSHVYEEVDEEQYSKLVQERQ 83

Query: 71   EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGK-----K 125
            E+   +I+DDDG GY ++G+E                      +    +EKRGK      
Sbjct: 84   ED--DWIIDDDGTGYVEDGRE-----------------IFDDDLDDDVVEKRGKGGAKGA 124

Query: 126  ENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL------ 179
            E+ + V+K        AA+     + ++  ++ + K ++ +     + ++ ++L      
Sbjct: 125  ESKKTVKK--------AAVTKPNTIKSLFMNSNVKKPAEKDIDLSKDDLLGDILQDLHSE 176

Query: 180  --AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFV--- 234
              A  AP      ++++S+ S +  F   + +   S +      +V+     +       
Sbjct: 177  KPAVLAPPPVITLKKKKSLGSPMNPFSIRHQMPKESPMTGLKAKTVRPPPAELRPPACPS 236

Query: 235  -QIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEK 293
              ++      E  + + E ++S  L + D F E  E   +   E   E      K+  +K
Sbjct: 237  PPLEKSSEKVEKPKEEEEENDSLALDEVD-FDEPMETEPEIKEETEAEAAPSVPKVEPKK 295

Query: 294  DPLLSATA--------GWKEVSGGNMVLDE---GKSGLNCQESEFEVDDDGSLPFYILDA 342
            +PL  A          G +E +G + V  E     S L   E E   D + +  FY LDA
Sbjct: 296  EPLSPAPLPSRVGGHWGQEEETGASDVPAEVHVDSSQLPLVEGE---DGEPAFRFYWLDA 352

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
             E       G +YLFGKV  ++  +H SCCV VKN++R +Y +P           K    
Sbjct: 353  FEDPYN-QPGVVYLFGKVWIQSAKSHVSCCVTVKNIERTIYLLPRE--------YKTNPK 403

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
              E    P+      Q+      +E++ +     V  +    V++ YAF   ++P    Y
Sbjct: 404  TGEVSGEPVGMMDVYQEF-----SELSEKF---KVMKFKSKKVEKNYAFEIPDVPNQCEY 455

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             L+I Y  + P LP DLKG  F  + GT++S+LE FL+ RK+KGP WL I        P 
Sbjct: 456  -LQIQYSAEFPALPPDLKGATFSHIFGTNTSSLEHFLLSRKIKGPCWLDIKTPQMMHQP- 513

Query: 521  RVSWCKYEI------TVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
             VSWCK E+      T+   KD+            PP+TV +I+LKTV N +   NEIVS
Sbjct: 514  -VSWCKVEVLALRGDTISLVKDL----------PPPPLTVMSISLKTVQNPKTHHNEIVS 562

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  +   +D     + ++     ++F V+ K    IFP  F +    +N K      
Sbjct: 563  LAALLHYGFHMDKAPPQTPYQ-----NYFCVISKPADCIFPYDFKEALRKKNGKVE---- 613

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               S+ER LL   + +++K+D DVLVGH+I GFDL+VLL R  VC+VP   WSKIGRL+R
Sbjct: 614  -IASTERTLLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKVPH--WSKIGRLRR 670

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            + MPKL  GR +F    +    +C  GRL+CD  + +++L+R  SY LT+LA   L  +R
Sbjct: 671  ANMPKL-GGRGLFAEKNA----TC--GRLVCDVEISAKELIRCKSYHLTELAAQVLKVER 723

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              V   +V  ++     L+ L+E   TDA L +++M  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 724  VTVPQEEVKNLYSDSPHLLYLLELTWTDAKLILQIMCELNVLPLALQITNIAGNVLSRTL 783

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G R++R EYLLLHAF  K YIVPDK ++    K A+     G ED +  +   +     
Sbjct: 784  MGGRSERNEYLLLHAFHDKNYIVPDKPSF----KKAQLEMGDGEEDVDAGKGKRKKKA-- 837

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
                           AY+GGLVL+PK G YD+++LLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 838  ---------------AYSGGLVLDPKVGFYDQFVLLLDFNSLYPSIIQEFNICFTTVQRE 882

Query: 935  PDG-----------LVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                           +P +P      G+LP+ ++ LV+RR+ VK  MK    +     Q 
Sbjct: 883  AQNSRRKREEDESEEIPEIPDPGLEMGILPKEIRKLVERRKQVKQLMKQQDINPDLYMQY 942

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T D+VQ  +NLEVIYG
Sbjct: 943  DIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILMHTKDMVQ-KMNLEVIYG 1001

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++    + +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+
Sbjct: 1002 DTDSIMINTNSKSLEEVFKLGNKVKAEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVE 1061

Query: 1101 FKDGMPYEV-IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
                  Y V  E KGLD+VRRDW  L+KE G++ + QILS++S + +VE+I   L++V E
Sbjct: 1062 HHGDGRYSVKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQSRDIIVENIQKHLVEVGE 1121

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             + +G + L  Y I K LTK P+ YPD K+ PHV VAL +   G      AGDT+ Y+IC
Sbjct: 1122 RVANGDIPLNLYEIHKALTKDPQDYPDKKSLPHVHVALWINSQG-GRRVKAGDTISYLIC 1180

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA   ++L+K +G   +D  YY +QQIHPVVSR+C  IEG     
Sbjct: 1181 -----KDGSTLAASQRAYALEQLQKQEG-LSVDTQYYLAQQIHPVVSRICEPIEGIDGVL 1234

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFAV--GDEERYRGCEPLILSCPSCSSTFDCP 1337
            +A  LGLDPS F+S        +    L   V   DEERYR CE    +CPSC +     
Sbjct: 1235 IATWLGLDPSHFRSHQQHQREEEADGMLGAPVQLTDEERYRDCERFTFTCPSCGT----- 1289

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
                +I  +V E     + E    R    P     ++     P  I+N++       +  
Sbjct: 1290 ---DNIYDNVFEGAGN-KVEPGLMRCCHIPCQSRPID----HPVHISNKLLLDIRRHIKK 1341

Query: 1398 YYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            YY G ++C+D+ C+  T  L    I  +  G +CP   R   R   +Y+E  LY QL ++
Sbjct: 1342 YYSGWLVCEDQACQNRTRRLP---IAFSRHGPICPACSRATLR--PEYSEKALYNQLCFY 1396

Query: 1458 CHLLDTQRGIEKM 1470
              + D +    K+
Sbjct: 1397 RFIFDWEHAFSKV 1409


>gi|152002407|gb|ABS19604.1| DNA polymerase alpha [Sterkiella histriomuscorum]
          Length = 1516

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1560 (32%), Positives = 803/1560 (51%), Gaps = 189/1560 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            M D+    +GR   +     A   AL +L+A R GG +  D   Y +     I+D + +D
Sbjct: 1    MSDKYTTQSGREIKKSGRGDAAKGALAQLRAAREGGSKRTDQ--YQVDEAKKIFDEIDDD 58

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            EYD +  +R+ +   FIVDDDG GY D G E  W         DD   DG +  KK++++
Sbjct: 59   EYDKIQDQRKND--DFIVDDDGYGYRDHGGE-IWE-------RDDHPEDGGKK-KKRKLD 107

Query: 121  KRGKK-----ENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAM---FKKSKDEKVKE-- 170
               +      +    + +P     ++A +  K ++SA  +   M   F++   + V E  
Sbjct: 108  PNEQSITAFMKPKSTINRPGAVTNSSAQIKQKPKVSAEQSKDIMNNLFQELDSKDVDELQ 167

Query: 171  ---SESVIDEVLAEFAPDEADRERRRRSVSSNIKSFV--------------------SVN 207
               + +V+ E+    A ++ D    + +V+   +  V                    S N
Sbjct: 168  DVNNSAVVTELNKPIAFNQNDMLTSKYAVTLETRQEVEQKRVTEQIQAQAQIGQNQQSSN 227

Query: 208  SVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNF--- 264
                  +    STN     SD  +  V  Q  D + +S    +    S+E   + +F   
Sbjct: 228  PFSKKRKFEEISTNQNANASD--SKRVSNQTNDNLNKSGNTSYFDAKSSESLNQSDFQSA 285

Query: 265  ------VEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLD---- 314
                  ++     K+++ + V   K L  +  +  +        W +V   N   +    
Sbjct: 286  MDDSMKIDQTSAQKNQIEQTVNHSKTLEIQSKSNDE--------WNQVRQQNFQANQELR 337

Query: 315  --EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCC 370
              E   G N QE    ++++G+L FY +DAHE+ +G +   LY+FGK+         SC 
Sbjct: 338  NMEPSVGQNTQEFPLPLNENGTLSFYWIDAHEENNGTD---LYIFGKIYQPQMRQFVSCS 394

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            + V  MQR +YA+P              K   ++R +     +K Q  A+ ++ +   + 
Sbjct: 395  MKVNGMQRELYALP--------------KMRGKARGALTVEEEKQQVRAVMMELDDIRKK 440

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
                +S +   PV R+YAF +  I  GE+  LKI Y    PPLP+ ++G  F  + G+  
Sbjct: 441  RFPQISKWRCKPVNRKYAF-EMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQ 499

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            S LELF++KRK++GP W++I   +     ++ +WC+ EI +D+PK++ V+    +  E+P
Sbjct: 500  SMLELFILKRKIRGPCWMTIKNPTKVTDFKK-TWCRQEIVIDNPKNVEVTLEDLNKQELP 558

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T    + KT    +Q+ NEI  A + C     I+T +      +      FT++RKLD
Sbjct: 559  PLTSLTFSFKTT-RAQQNTNEI--AMISCL----INTNIAQEGPSQVERTQSFTLLRKLD 611

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G   P  F+++   R      N++    +ER ++   + +++ +D D++V HN+ G   D
Sbjct: 612  GKPMPYDFDQKVKQRKE----NIIQKFENERQMIEAFIAKVFIVDPDLVVAHNLCGGMFD 667

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLCDT 727
            +LL R Q  +V  + WS+IGRLK++++P  +    G +  GS   P  ++C  GRLL DT
Sbjct: 668  LLLARIQYLKV--NHWSRIGRLKKTQIPNKKLDFGGSSYGGSQWIPRQVTC--GRLLVDT 723

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            FL +++L+RE SY L  LAK QL KDR++     +  ++ T E L  LI++ E DA+L++
Sbjct: 724  FLSAKELVRETSYDLIYLAKVQLKKDRQDFDDELLPTLYITSERLFSLIDHTEKDAYLTI 783

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
            +LM HL+++PLT+QLTNI+GBLW ++LQ ARA+R E LLLH F+ KK+I+PD        
Sbjct: 784  QLMNHLAIIPLTKQLTNIAGBLWFRSLQNARAERNEMLLLHEFKKKKFILPD-------- 835

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
               K+  N     RN+     E+A              ++  AYAGGLV+EPK G YD  
Sbjct: 836  ---KKAPNAKDFKRNMFADEFEEAEV---GKGPKKGGKRKKAAYAGGLVIEPKAGFYDNI 889

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSP----DGL-----------------------VP 940
            ILLLDFNSLYPSIIQEYN+CFTTV R P    DG                        +P
Sbjct: 890  ILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLP 949

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLG 999
                +    VLP +L++LVQ+R+ VK  MK     +K+ QL+I+Q+A+KLTANSMYGCLG
Sbjct: 950  DKNVNVKDAVLPNVLRDLVQKRKAVKEKMKNEKDAVKLSQLEIRQKAIKLTANSMYGCLG 1009

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
            F +SRF+A+ +A LIT+ GR+ L  T D+ +N L   V+YGDTDSIMI++G + + ++  
Sbjct: 1010 FGSSRFHAQAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLE 1069

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMV 1118
            +  ++  EVN  YKCLEI++DG++K +LLLKKKKYAA+K + F       V E KGLDMV
Sbjct: 1070 MGKRLKAEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMV 1129

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRDW  LSK VG+F L+QILS +  EDVV +++  L  + E M++  + L++++ITK LT
Sbjct: 1130 RRDWCPLSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFIITKQLT 1189

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K    Y D K QPHV VA RLK  G S      + +PY+I  +    S ++  +A +A H
Sbjct: 1190 KAISEYSDIKGQPHVAVAQRLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPALADKAYH 1249

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
            P+E+    GK ++DI++Y + Q+ P ++RL   I+G   E +A CLG+DP K++   SE 
Sbjct: 1250 PEEVVSSKGKILLDIEWYITMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSSEK 1309

Query: 1299 MSSDPSS-------SLLFAVGDEERYRG--CEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
             + + ++       + +     E   +G     L + CP CS ++  P +          
Sbjct: 1310 KTGETNNDDGTLIQNPILQTETERSLKGRTIAELTIKCPHCSESYHFPGIFQ-------- 1361

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                 + + N    L C KC +      I    I N+V       +++YY+G   C +  
Sbjct: 1362 -----DGKNNTLSGLLCIKCTQP-----IPEAYIQNRVTLFLKQLLTLYYQGNKQCQEPA 1411

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
            C     +++ +L+ + +    C N   C G+++ +YTE      L Y   L + ++ I++
Sbjct: 1412 C----GAVSRQLLYNNK----CINLA-CKGKMIPEYTEQKTNDTLRYLQGLFNVKKYIQE 1462


>gi|171846445|gb|AAI61721.1| LOC398200 protein [Xenopus laevis]
          Length = 1458

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1217 (38%), Positives = 678/1217 (55%), Gaps = 137/1217 (11%)

Query: 332  DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DGS    FY LDA+E    +  G +YLFGKV  ++   + SCCV VKN++R VY +P   
Sbjct: 336  DGSQVFRFYWLDAYED-QYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPREN 394

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              Q    +   KD     +S M   ++  + A+  K +I           +    V + Y
Sbjct: 395  RVQ----LSTGKDTGVP-VSMMHVYQEFNE-AVAEKYKIMK---------FKSKKVDKDY 439

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y    P LP DLKGE F  + GT++S+LELFL+ RK+KGPSW
Sbjct: 440  AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 498

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   S   + Q +SWCK E  V  P  + V    K +A  PPV V ++++KTV N + 
Sbjct: 499  LEIK--SPQLSSQPMSWCKVEAVVTRPDQVSVV---KDLAP-PPVVVLSLSMKTVQNAKT 552

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ + +  H   +D         +P   +HF V+ KL+  IFP  +N+    +N+
Sbjct: 553  HQNEIVAIAALVHHTFPLDKAP-----PQPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA 607

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
                  +    +ER LL   + +++K+D DV+VGH+I GFDL+VLL R   C+VP   WS
Sbjct: 608  N-----IEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP--FWS 660

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR+ F         +   GR++CD  + +++L+R  SY L++L  
Sbjct: 661  KIGRLRRSVMPKL-GGRSGFAE------RNAACGRIICDIEISAKELIRCKSYHLSELVH 713

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++   +     L+ ++E    DA   +++M  L+VLPL  Q+TNI+G
Sbjct: 714  QILKAERVVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAG 773

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R EYLLLHAF    +IVPDK  + K                 +++ T
Sbjct: 774  NVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK-----------------MQQTT 816

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED N D  T  N ++  K+  AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQEYNIC
Sbjct: 817  VED-NDDMGTDQNKNKSRKKA-AYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNIC 874

Query: 928  FTTVERSPDGL--------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTAS---GL 975
            FTTV R             +P LP S    G+LP  ++ LV+RRR VK  MK       L
Sbjct: 875  FTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDL 934

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
             +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T QGREIL  T ++VQ  +NL
Sbjct: 935  YLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQK-MNL 992

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIMI++  +++ +   +  +V  E+NK YK LEID+DG++K +LLLKKKKYA
Sbjct: 993  EVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYA 1052

Query: 1096 AVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A+ V+   DG      E KGLD+VRRDW  L+K+ G++ +SQILS++  + +VE+I   L
Sbjct: 1053 ALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKL 1112

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
             ++ E++ +G V + +Y I K LTK P+ YPD K+ PHV VAL +   G      AGDT+
Sbjct: 1113 TEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTI 1171

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y+IC       GS++  +QRA   ++L+K +    ID  YY SQQ+HPVV+R+C  I+G
Sbjct: 1172 SYVIC-----QDGSNLSASQRAYAQEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPIDG 1225

Query: 1275 TSPERLADCLGLDPSKF-------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
                 +A  LGLDPS+F       Q + ++ +   PS      + DEE+YR CE     C
Sbjct: 1226 IDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGGPSQ-----LTDEEKYRDCERFKFFC 1280

Query: 1328 PSCSSTFDCPAVCSSICMSVS---EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            P C +      V     + +    ++ SKPE          C   P +          + 
Sbjct: 1281 PKCGTENIYDNVFDGSGLQIEPGLKRCSKPE----------CDASPLDYVI------QVH 1324

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR- 1443
            N++      ++  YY G ++C+++TC+  T  L L     +  G +C     C+   +R 
Sbjct: 1325 NKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRLPLSF---SRNGPIC---QACSKATLRS 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM-------EISAKIPLEKELNKIRPVVALAASTV 1496
            +Y E  LY QL ++  +LD    +EK+        +  K+  E E N+ + +     STV
Sbjct: 1379 EYPEKALYTQLCFYRFILDWDYALEKVVSEQERGHLKKKLFQESE-NQYKKL----KSTV 1433

Query: 1497 QRIRERCAYGWVKLNDI 1513
             ++  R  Y  V L+ +
Sbjct: 1434 DQVLSRSGYSEVNLSKL 1450



 Score = 46.6 bits (109), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 1  MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
          M D     A R R    E S R EALERLK       ++G+ V Y ++  + IY+ V E 
Sbjct: 1  MSDSGSFAASRSRREKTEKSGRKEALERLKRA-----KAGEKVKYEVEQVSSIYEEVDEA 55

Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          EY  LV  R  +   +IVDDDG GY ++G+E
Sbjct: 56 EYSKLV--RDRQDDDWIVDDDGTGYVEDGRE 84


>gi|147903805|ref|NP_001082055.1| DNA polymerase alpha catalytic subunit [Xenopus laevis]
 gi|45476976|sp|Q9DE46.1|DPOLA_XENLA RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
            Full=DNA polymerase alpha catalytic subunit p180
 gi|11493738|gb|AAG35630.1|AF202992_1 DNA polymerase alpha [Xenopus laevis]
          Length = 1458

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1217 (38%), Positives = 678/1217 (55%), Gaps = 137/1217 (11%)

Query: 332  DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DGS    FY LDA+E    +  G +YLFGKV  ++   + SCCV VKN++R VY +P   
Sbjct: 336  DGSQVFRFYWLDAYED-QYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPREN 394

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              Q    +   KD   + +S M   ++  + A+  K +I           +    V + Y
Sbjct: 395  RVQ----LSTGKDTG-APVSMMHVYQEFNE-AVAEKYKIMK---------FKSKKVDKDY 439

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y    P LP DLKGE F  + GT++S+LELFL+ RK+KGPSW
Sbjct: 440  AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 498

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   S   + Q +SWCK E  V  P  + V    K +A  PPV V ++++KTV N + 
Sbjct: 499  LEIK--SPQLSSQPMSWCKVEAVVTRPDQVSVV---KDLAP-PPVVVLSLSMKTVQNAKT 552

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ + +  H   +D         +P   +HF V+ KL+  IFP  +N+    +N+
Sbjct: 553  HQNEIVAIAALVHHTFPLDKAP-----PQPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA 607

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
                  +    +ER LL   + +++K+D DV+VGH+I GFDL+VLL R   C+VP   WS
Sbjct: 608  N-----IEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP--FWS 660

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR+ F         +   GR++CD  + +++L+R  SY L++L  
Sbjct: 661  KIGRLRRSVMPKL-GGRSGFAE------RNAACGRIICDIEISAKELIRCKSYHLSELVH 713

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++   +     L+ ++E    DA   +++M  L+VLPL  Q+TNI+G
Sbjct: 714  QILKAERVVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAG 773

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R EYLLLHAF    +IVPDK  + K                 +++ T
Sbjct: 774  NVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK-----------------MQQTT 816

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED N D  T  N ++  K+  AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQEYNIC
Sbjct: 817  VED-NDDMGTDQNKNKSRKKA-AYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNIC 874

Query: 928  FTTVERSPDGL--------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTAS---GL 975
            FTTV R             +P LP S    G+LP  ++ LV+RRR VK  MK       L
Sbjct: 875  FTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDL 934

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
             +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T QGREIL  T ++VQ  +NL
Sbjct: 935  YLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQK-MNL 992

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIMI++  +++ +   +  +V  E+NK YK LEID+DG++K +LLLKKKKYA
Sbjct: 993  EVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYA 1052

Query: 1096 AVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A+ V+   DG      E KGLD+VRRDW  L+K+ G++ +SQILS++  + +VE+I   L
Sbjct: 1053 ALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKL 1112

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
             ++ E++ +G V + +Y I K LTK P+ YPD K+ PHV VAL +   G      AGDT+
Sbjct: 1113 TEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTI 1171

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y+IC       GS++  +QRA   ++L+K +    ID  YY SQQ+HPVV+R+C  I+G
Sbjct: 1172 SYVIC-----QDGSNLSASQRAYAQEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPIDG 1225

Query: 1275 TSPERLADCLGLDPSKF-------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
                 +A  LGLDPS+F       Q + ++ +   PS      + DEE+YR CE     C
Sbjct: 1226 IDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGGPSQ-----LTDEEKYRDCERFKFFC 1280

Query: 1328 PSCSSTFDCPAVCSSICMSVS---EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            P C +      V     + +    ++ SKPE          C   P +          + 
Sbjct: 1281 PKCGTENIYDNVFDGSGLQIEPGLKRCSKPE----------CDASPLDYVI------QVH 1324

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR- 1443
            N++      ++  YY G ++C+++TC+  T  L L     +  G +C     C+   +R 
Sbjct: 1325 NKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRLPLSF---SRNGPIC---QACSKATLRS 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM-------EISAKIPLEKELNKIRPVVALAASTV 1496
            +Y E  LY QL ++  + D    +EK+        +  K+  E E N+ + +     STV
Sbjct: 1379 EYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKKKLFQESE-NQYKKL----KSTV 1433

Query: 1497 QRIRERCAYGWVKLNDI 1513
             ++  R  Y  V L+ +
Sbjct: 1434 DQVLSRSGYSEVNLSKL 1450



 Score = 46.6 bits (109), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 1  MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
          M D     A R R    E S R EALERLK       ++G+ V Y ++  + IY+ V E 
Sbjct: 1  MSDSGSFAASRSRREKTEKSGRKEALERLKRA-----KAGEKVKYEVEQVSSIYEEVDEA 55

Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          EY  LV  R  +   +IVDDDG GY ++G+E
Sbjct: 56 EYSKLV--RDRQDDDWIVDDDGTGYVEDGRE 84


>gi|213623734|gb|AAI70149.1| DNA polymerase alpha [Xenopus laevis]
 gi|213626038|gb|AAI70147.1| DNA polymerase alpha [Xenopus laevis]
          Length = 1458

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1217 (38%), Positives = 677/1217 (55%), Gaps = 137/1217 (11%)

Query: 332  DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DGS    FY LDA+E    +  G +YLFGKV  ++   + SCCV VKN++R VY +P   
Sbjct: 336  DGSQVFRFYWLDAYED-QYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPREN 394

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              Q    +   KD     +S M   ++  + A+  K +I           +    V + Y
Sbjct: 395  RVQ----LSTGKDTGVP-VSMMHVYQEFNE-AVAEKYKIMK---------FKSKKVDKDY 439

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y    P LP DLKGE F  + GT++S+LELFL+ RK+KGPSW
Sbjct: 440  AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 498

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   S   + Q +SWCK E  V  P  + V    K +A  PPV V ++++KTV N + 
Sbjct: 499  LEIK--SPQLSSQPMSWCKVEAVVTRPDQVSVV---KDLAP-PPVVVLSLSMKTVQNAKT 552

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ + +  H   +D         +P   +HF V+ KL+  IFP  +N+    +N+
Sbjct: 553  HQNEIVAIAALVHHTFPLDKAP-----PQPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA 607

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
                  +    +ER LL   + +++K+D DV+VGH+I GFDL+VLL R   C+VP   WS
Sbjct: 608  N-----IEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP--FWS 660

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR+ F         +   GR++CD  + +++L+R  SY L++L  
Sbjct: 661  KIGRLRRSVMPKL-GGRSGFAE------RNAACGRIICDIEISAKELIRCKSYHLSELVH 713

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++   +     L+ ++E    DA   +++M  L+VLPL  Q+TNI+G
Sbjct: 714  QILKAERVVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAG 773

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R EYLLLHAF    +IVPDK  + K                 +++ T
Sbjct: 774  NVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK-----------------MQQTT 816

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED N D  T  N ++  K+  AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQEYNIC
Sbjct: 817  VED-NDDMGTDQNKNKSRKKA-AYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNIC 874

Query: 928  FTTVERSPDGL--------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTAS---GL 975
            FTTV R             +P LP S    G+LP  ++ LV+RRR VK  MK       L
Sbjct: 875  FTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDL 934

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
             +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T QGREIL  T ++VQ  +NL
Sbjct: 935  YLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQK-MNL 992

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIMI++  +++ +   +  +V  E+NK YK LEID+DG++K +LLLKKKKYA
Sbjct: 993  EVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYA 1052

Query: 1096 AVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A+ V+   DG      E KGLD+VRRDW  L+K+ G++ +SQILS++  + +VE+I   L
Sbjct: 1053 ALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKL 1112

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
             ++ E++ +G V + +Y I K LTK P+ YPD K+ PHV VAL +   G      AGDT+
Sbjct: 1113 TEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTI 1171

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y+IC       GS++  +QRA   ++L+K +    ID  YY SQQ+HPVV+R+C  I+G
Sbjct: 1172 SYVIC-----QDGSNLSASQRAYAQEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPIDG 1225

Query: 1275 TSPERLADCLGLDPSKF-------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
                 +A  LGLDPS+F       Q + ++ +   PS      + DEE+YR CE     C
Sbjct: 1226 IDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGGPSQ-----LTDEEKYRDCERFKFFC 1280

Query: 1328 PSCSSTFDCPAVCSSICMSVS---EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            P C +      V     + +    ++ SKPE          C   P +          + 
Sbjct: 1281 PKCGTENIYDNVFDGSGLQIEPGLKRCSKPE----------CDASPLDYVI------QVH 1324

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR- 1443
            N++      ++  YY G ++C+++TC+  T  L L     +  G +C     C+   +R 
Sbjct: 1325 NKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRLPLSF---SRNGPIC---QACSKATLRS 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM-------EISAKIPLEKELNKIRPVVALAASTV 1496
            +Y E  LY QL ++  + D    +EK+        +  K+  E E N+ + +     STV
Sbjct: 1379 EYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKKKLFQESE-NQYKKL----KSTV 1433

Query: 1497 QRIRERCAYGWVKLNDI 1513
             ++  R  Y  V L+ +
Sbjct: 1434 DQVLSRSGYSEVNLSKL 1450



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 1  MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
          M D     A R R    E S R EALERLK       ++G+ V Y ++  + IY+ V E 
Sbjct: 1  MSDSGSFAASRSRREKTEKSGRKEALERLKRA-----KAGEKVKYEVEQVSSIYEEVDEA 55

Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          EY  LV  R  +   +IVDDDG GY ++G+E
Sbjct: 56 EYSKLV--RDRQDDDWIVDDDGTGYVEDGRE 84


>gi|224015515|ref|XP_002297409.1| hypothetical protein THAPSDRAFT_bd439 [Thalassiosira pseudonana
            CCMP1335]
 gi|220967910|gb|EED86279.1| hypothetical protein THAPSDRAFT_bd439 [Thalassiosira pseudonana
            CCMP1335]
          Length = 1141

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1199 (40%), Positives = 657/1199 (54%), Gaps = 146/1199 (12%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGST------HHSCCVVVKNMQRCVYAIPNGPL 388
            L  + LDA E+      G +YL+GKV+  S       + SCCV V N QR ++ +P    
Sbjct: 3    LDMFWLDAAER-----NGVVYLYGKVRIPSKDPSKQKYQSCCVTVPNNQRNLFVLP---- 53

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
                 +     D  + R   M    +++ V         + + +   SN+    V R YA
Sbjct: 54   ----RVKSTNPDEGQERYGIMDVYNEIKSVL------TPSCIPHTEGSNWAGKKVTRSYA 103

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADL---KGENFCSLLGTHSSALELFLVKRKVKGP 505
            F    IP GE   LK+ Y  K P    D+    G++F  +LG  +S LE FL+KR + GP
Sbjct: 104  FEDPSIPRGECDYLKVKYDGKYPVPNRDVCVNGGKSFEKILGAGASNLENFLLKRDLMGP 163

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             W+ I    S      +SWCK+E TV  PK I V   S  +   P V+  +I  KTV N 
Sbjct: 164  QWVRIYNPKSIGG--SISWCKWECTVAGPKSI-VKLESVAMPPTPTVSTVSIKFKTVVNP 220

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI--FPMGFNKEAT 623
            +    EIV  S +C +K ++D+    S         H T +   +G +  FP    KE  
Sbjct: 221  KSHKLEIVCVSAICHNKVQLDSASDEST-------RHMTQLTLSNGTMPQFPRDMEKEM- 272

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
                K    +  C  +ERALL+RL  ++ + D DVLV HN  G D+DVLL R    +V  
Sbjct: 273  ----KQMPELQKC-PNERALLSRLFAQIGQWDPDVLVSHNGWGHDIDVLLSRCVELKV-- 325

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
            SMWSKIGR ++ ++P      T FG+G    I + + GR+LCDT + +++LLRE +YSLT
Sbjct: 326  SMWSKIGRRRQMKLP----NATQFGNGKEWAIANALDGRILCDTCISAKELLRETTYSLT 381

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
             L  TQL   R E+ P DV K  +  +  + L ++   DA L   LMF L +LPLT+QLT
Sbjct: 382  NLTLTQLKMQRVEIEPVDVPKWCRDGKHFVSLAQHTLNDAQLVQRLMFKLQILPLTKQLT 441

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            NI+GNLW +T++G RA+R EYLLLH F   KY+VP+K T       AKQRS         
Sbjct: 442  NIAGNLWARTMKGNRAERNEYLLLHEFHNLKYLVPEKRT-------AKQRS--------- 485

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
            EEL  E        + N   K      Y+GGLVLEPKKGLYD +ILLLDFNSLYPS+IQE
Sbjct: 486  EELGEEGG------ASNGKAK------YSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQE 533

Query: 924  YNICFTTVERS-------------PDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMVKTW 968
            YN+CFTT+E S             P G  +P LP      GVLP ++K LV RRR VK +
Sbjct: 534  YNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKF 593

Query: 969  MKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +KT  +  K ++L+I+QQALKLTANSMYGCLGFS+SRFYA+P+A L+T  GRE L+ TVD
Sbjct: 594  LKTEKNAEKKEELNIRQQALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQRTVD 653

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDI---AKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            L Q ++ LEVIYGDTDSIMI++ I D+    +   +  +V +EVNK Y  LE+++DG+++
Sbjct: 654  LAQTSIGLEVIYGDTDSIMINTRITDVNEYPRVLELGNQVKREVNKLYNTLELEIDGVFR 713

Query: 1085 RMLLLKKKKYAAVKVQFKDG--MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
             MLLLKKKKYAAV +    G  M ++  E KGLD+VRRDW + SKE G F L QILS   
Sbjct: 714  SMLLLKKKKYAAVTMAEGPGGKMIFDK-EMKGLDLVRRDWCIQSKESGKFVLDQILSGEE 772

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA-LRLKQ 1201
             E VV +IH+ L KV + MRSG++ L+KY+ITK L K P  YPDAK+ PHV VA + LK 
Sbjct: 773  KEVVVSNIHDHLEKVAQQMRSGELPLDKYIITKGLNKHPNEYPDAKSLPHVYVAKMMLKD 832

Query: 1202 SGYSTGCSAGDTVPYIIC---CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
                   S GD +PY+I     E+  S+  ++  A+RARHPDE+++ +G    D+++Y +
Sbjct: 833  ---HKAVSIGDHIPYVITELEKEEEPSNKKTLA-AERARHPDEIERSNGAMKPDVEWYLT 888

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSD------PSSSLLFAVG 1312
            QQI P +SRLC  IEGTSP  LA+ LGLD SK+ +  S  +  D      P+S L     
Sbjct: 889  QQILPPISRLCEPIEGTSPGILAEKLGLDSSKYNNIVSANIDEDDIVDYTPASCL----P 944

Query: 1313 DEERYRGCEPLILSCPSCSSTFDCPAVCS-------SICMSVSEKPSKPETEYNFWRTLR 1365
            DEER++  E L+++C  C+ + + P V         S C S    P+ P      W    
Sbjct: 945  DEERFKDVEKLVVTCSGCNESAEFPGVFRLVKENGVSYCASGMSCPN-PVCGRPNWGDAD 1003

Query: 1366 CPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDA 1425
               C  +          I N++         +YY GL+ CDD  C   T  L++      
Sbjct: 1004 LESCIAK----------ILNRMNLMKKEQQKLYYDGLVRCDDPMCNLETRQLSVY----- 1048

Query: 1426 ERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
                 C     CNGR+   YTE+ L  QL YF  L D     ++++ S     EKE+ K
Sbjct: 1049 ---EGCCLKAGCNGRMKTVYTESSLQTQLKYFDSLFDIDHACKQLKKSQSSLTEKEMLK 1104


>gi|6679409|ref|NP_032918.1| DNA polymerase alpha catalytic subunit [Mus musculus]
 gi|544185|sp|P33609.2|DPOLA_MOUSE RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
            Full=DNA polymerase alpha catalytic subunit p180
 gi|442471|dbj|BAA04202.1| DNA polymerase alpha catalytic subunit p180 [Mus musculus]
 gi|475159|dbj|BAA40003.1| DNA polymerase alpha catalytic subunit [Mus musculus]
 gi|148697793|gb|EDL29740.1| polymerase (DNA directed), alpha 1 [Mus musculus]
          Length = 1465

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1543 (34%), Positives = 802/1543 (51%), Gaps = 187/1543 (12%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D     A R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFAASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++     VDDDG+GY ++G+E    +       D     G+ S  K   +
Sbjct: 71   QYSKLVQARQDDDWI--VDDDGIGYVEDGRE----IFDDDLEDDALDTCGKGSDGKAHRK 124

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
             R K     +V KPN       A  GK+      T+      SKD+ + +    ++   A
Sbjct: 125  DR-KDVKKPSVTKPNNIKAMFIASAGKK------TTDKAVDLSKDDLLGDILQDLNTETA 177

Query: 181  EFAPDEADRERRRRSVSSNIKSFV-----SVNSVKTNSQLVTNS---TNSVKENSDLINN 232
            +  P      +++RS  + +  F      ++ S K  S ++ N    T    + ++L   
Sbjct: 178  QITPPPVLIPKKKRSTGALLNPFSVHTPKAIPSGKPASPVLRNEPLLTPIPLKRAELAGE 237

Query: 233  FVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKI 289
              Q +  +  +E   +++E    D S +  K D    V  K  D+  E V+       ++
Sbjct: 238  LAQPECPEDEQELGVMEFEDGDFDESMDTEKVDE-KPVTAKTWDQETEPVE-------RV 289

Query: 290  STEKDP----------LLSATAGWK------------EVSGGNMVLDEGKSGLNCQESEF 327
              E DP           L   + W             +V   N+ L +G           
Sbjct: 290  EHEADPERGTTSYLENFLPDVSCWDIDQDDESIPQEVQVDSSNLPLVKG----------- 338

Query: 328  EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN 385
              DD+    FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P 
Sbjct: 339  -ADDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPR 396

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKR 445
                     MK + +  +    P+     ++DV     ++I+ +   +   + IV   ++
Sbjct: 397  E--------MKFDLNTGKETAIPVT----MKDVYEEFDSKISAKYKIMKFKSKIV---EK 441

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
             YAF   ++P    Y L++ Y  + P LP +LKGE F  + GT++S+LELFL+ RK+KGP
Sbjct: 442  NYAFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGP 500

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL +        P  +SWCK+E+    P  + V          PP+ V + ++KT+ N 
Sbjct: 501  CWLEVKNPQLLNQP--ISWCKFEVMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNV 554

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            +   +EI++ + +  H   +D         +P   +HF VV K    IFP  F +  + +
Sbjct: 555  QNHQHEIIAMAALVHHSFALDKAP-----PEPPFQTHFCVVSKPKDCIFPCDFKEVISKK 609

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
            N K         ++ER L+   + +++K+D D+LVGHNI  F+L+VLL R   C+VP   
Sbjct: 610  NMKVE-----IAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVP--Y 662

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            WSKIGRL+RS MPKL       GS +  G  +   GR++CD  + +++L+   SY L++L
Sbjct: 663  WSKIGRLRRSNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSEL 715

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
             +  L  +R  +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI
Sbjct: 716  VQQILKTERIVIPTENIRNMYSESSYLLYLLEHIWKDARFILQIMCELNVLPLALQITNI 775

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +GN+  +TL G R++R E+LLLHAF    YIVPDK  + K                  ++
Sbjct: 776  AGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QK 819

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
            L +ED   D DT  N ++KG++   YAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+N
Sbjct: 820  LGDEDEEIDGDT--NKYKKGRKKATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFN 877

Query: 926  ICFTTVERSPDGL-----------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA- 972
            ICFTTV+R    +           +P LP      G+LP  ++ LV+RR+ VK  MK   
Sbjct: 878  ICFTTVQRVTSEVQKATEDEEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQD 937

Query: 973  -SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
             +   + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T D+VQ 
Sbjct: 938  LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQK 997

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
             +NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+D ++K +LLLKK
Sbjct: 998  -MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDAVFKSLLLLKK 1056

Query: 1092 KKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKYAA+ V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I
Sbjct: 1057 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1116

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
               L+++ E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      A
Sbjct: 1117 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQG-GRKVKA 1175

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GDTV Y+IC       GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C 
Sbjct: 1176 GDTVSYVIC-----QDGSNLTATQRAYAPEQLQKLDN-LAIDTQYYLAQQIHPVVARICE 1229

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSC 1327
             I+G     +A  LGLD ++F+    +    + + +LL     + DEE+Y+ CE     C
Sbjct: 1230 PIDGIDAVLIALWLGLDSTQFRV--HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLC 1287

Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIAN 1385
            PSC +         +I  +V E  S  + E + +R   + C   P            ++N
Sbjct: 1288 PSCGT--------ENIYDNVFEG-SGLDMEPSLYRCSNVDCKVSPLTFMV------QLSN 1332

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRL-IGDAERGTVCPNYPRCNGRLVR- 1443
            ++       +  YY G ++C++ TC    CS   RL +  +  G +C   P C   ++R 
Sbjct: 1333 KLIMDIRRCIKKYYDGWLICEEPTC----CSRLRRLPLHFSRNGPLC---PVCMKAVLRP 1385

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIR 1486
            +Y++  LY QL ++ ++ D    +EK+    K  L+K+   +R
Sbjct: 1386 EYSDKSLYTQLCFYRYIFDADCALEKLTEHEKDKLKKQFFPLR 1428


>gi|402223440|gb|EJU03504.1| DNA polymerase alpha catalytic subunit [Dacryopinax sp. DJM-731 SS1]
          Length = 1365

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1217 (37%), Positives = 675/1217 (55%), Gaps = 131/1217 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++DDGSL F+ LD  E     N G +Y  GKV  K      SCCV ++N++R ++ +   
Sbjct: 242  LEDDGSLRFFWLDYLE-----NDGKVYFVGKVVDKVTGKWVSCCVAIENIERNIFVL--- 293

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +    M + KD  E+   P    +  QD          +      +  +    VKRR
Sbjct: 294  ---KRHRKMGMRKDGAETDEIPTN-AEVFQD--------FDHVRRKAGIQKWRAKFVKRR 341

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAFG+ ++P  E   +K+ Y F +P LP D+ G +F  + GT +SA EL ++KRK+ GP 
Sbjct: 342  YAFGETDVPTEETEWMKVVYGFGEPQLPNDISGPSFSRVFGTSTSAFELLVLKRKIMGPC 401

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTVFN 564
            WL I + +   +   +SWCK E+ V +PKD+ + S +   A  +VPP+T+ +I+L+T+ N
Sbjct: 402  WLQIKEPTV--SDTGISWCKLEVVVSNPKDVNLFSDTDASAPRDVPPLTMMSISLRTIVN 459

Query: 565  KRQDVNEIVSASV--------VCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
             +++  EIV AS+        + C +  ++    A   + P  L   T+VR LD   FP 
Sbjct: 460  HKENKREIVCASLRTWENGRFLRCGQIVLNIDDNAPPEQVPSSLH--TIVRPLDR--FPA 515

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
            GF  +A    SK     +    +ER LL  L+  +++ D D++VGH+  G  LD+LLHR 
Sbjct: 516  GFENKARTEKSK-----IMTMKNERMLLGNLLATIHRYDPDIVVGHDFLGVSLDILLHRL 570

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---R 732
            +   + +  +S+IGR +R++ P + R+G  I            + GRLLCD  L S   +
Sbjct: 571  R--ELKTEHFSRIGRFRRAKWPNISRQGMNI----------KFLNGRLLCD--LASDGAK 616

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF----QTLESLMELIEYGETDAWLSME 788
             ++   ++SLT++ + QL   R+++ P D          T + L+  + + E D +  M 
Sbjct: 617  SMITSTTWSLTEMCQGQLKIQREDIDPDDTASYLDSTVNTPDRLLHFVRHCEMDTFFQMA 676

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            +   + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYIVPDK    K   
Sbjct: 677  IAARVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYIVPDKMWGKKTAN 736

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
             A +     +E         +D                      GGLV EPK+GL+DKYI
Sbjct: 737  AAAKAETEELEGGVPAAGKKKDKY-------------------KGGLVFEPKRGLWDKYI 777

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPDGL------VPHLPSSKTT-GVLPELLKNLVQR 961
            L++DFNSLYPSIIQEYNI FTT+E+ P+ +      +P  P++    GVLP L+  LV R
Sbjct: 778  LVMDFNSLYPSIIQEYNIDFTTIEQ-PEQVEGEEEKIPDTPATDIAQGVLPRLIATLVNR 836

Query: 962  RRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
            RR VK  MK  +AS  K+QQ DI+Q+ALKLTANSMYGCLGF  SRFYA+PLA L T +GR
Sbjct: 837  RRQVKNLMKDKSASKAKLQQYDIRQKALKLTANSMYGCLGFEYSRFYARPLAALTTFKGR 896

Query: 1020 EILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
            EIL  T +L ++ L L+V+YGDTDS+ ++S + D+ +AK IA    + VN++YK LEIDL
Sbjct: 897  EILTHTRELAES-LQLDVVYGDTDSVFVNSNVSDLEEAKKIANDFKKHVNERYKLLEIDL 955

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            DG+++R+LLL+KKKYAA+KV+ +DG      E KGLDM RR++  LSK V    L  ILS
Sbjct: 956  DGVFQRLLLLQKKKYAALKVE-EDGT--TSTEVKGLDMKRREYCALSKTVSQAVLEFILS 1012

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
              + E VVE IH  L K+ ED+++G++ +++++I K L K PE YPDAK+QPHVQVALR+
Sbjct: 1013 GEATEIVVERIHEYLTKIGEDVKAGKIDMDEFIIFKRLGKNPEDYPDAKSQPHVQVALRM 1072

Query: 1200 KQSGYSTGCSAGDTVPYIICC-EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K  G S     GD +PYI C  + G +S ++   A  A HPDEL+K +    ID  +Y S
Sbjct: 1073 KARGNS--ARGGDVIPYIFCLGDDGQTSRTAQ--ADHAHHPDELRKVNSGLHIDYLHYLS 1128

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYR 1318
            QQI P + RLC  IEGT   RLA+CLGLDPS++ S  S         +L   + D+ER++
Sbjct: 1129 QQILPPIERLCEPIEGTDRARLAECLGLDPSRYSSSLSNQTDEPLFGTLDSQIPDKERFK 1188

Query: 1319 GCEPLILSCPSCSSTFDCPAVCS-SICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
              + L++ C  C ++F   ++   + C+   + P             +CP C   +++  
Sbjct: 1189 DVDALLIRCRKCEASFMFGSMAEKNDCILHVDGP-------------KCPACSAPIQSAS 1235

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC 1437
            +       Q+ R     +S YY G M+CDD TC   T S+ +        G  C   P C
Sbjct: 1236 LQV-----QLDRAIRDHISKYYDGWMICDDPTCGNRTRSMGV-------YGRRCMR-PGC 1282

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI-PLEKELNKIRPVVALAASTV 1496
             G +  +YT+  LY Q+ ++  LLD ++   K + ++++  ++  L     ++      V
Sbjct: 1283 RGNMAFEYTDLMLYHQILFYSSLLDGKKAEAKCKNTSRLDEVKALLTSNHQLLDEMVGIV 1342

Query: 1497 QRIRERCAYGWVKLNDI 1513
             +  E+C   WV L ++
Sbjct: 1343 HKHLEKCGRQWVDLGNL 1359


>gi|449282368|gb|EMC89212.1| DNA polymerase alpha catalytic subunit, partial [Columba livia]
          Length = 1461

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1508 (35%), Positives = 796/1508 (52%), Gaps = 188/1508 (12%)

Query: 38   RSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVA 97
            ++G+ + Y ++    +YD + E+EY   V  R  +   +IVDDDG+GY ++G+E      
Sbjct: 4    KAGEKIKYEVEEFTGVYDEIDEEEYSKRV--RERQDDDWIVDDDGIGYVEDGRE------ 55

Query: 98   GLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNV-RKPNPSLTAAAAMMGKQRLSAMLTS 156
                  DD++L   +  K  +I    KK   ++V  KPN   +   A  GK+      ++
Sbjct: 56   IFDEDLDDDALGSNKKGKGGKISTVDKKNVKKSVVSKPNTIKSMFIASAGKK------ST 109

Query: 157  TAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSF---------VSVN 207
                  SKD+ + +    ++      +P      +R+RS    +  F         ++  
Sbjct: 110  DKTVDLSKDDLLGDILQDLNAETVPISPPPIITLKRKRSAGVPLNPFSVQSQNPKAITPI 169

Query: 208  SVKTNSQLVTNSTNSVK----------------ENSDLINNFVQ--IQNCDVVEESKELK 249
            S K  + L   +  +                  EN D+   +VQ   +N   V+  +E  
Sbjct: 170  SKKAPAHLRKEAVPAASFHPKHPNYTAKSAIDSENEDI--KYVQKATENGGTVKTIEEKA 227

Query: 250  WESDNSTELT-KRDNF--------VEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSAT 300
             E D+   +    ++F        VE   +  + +  D +  KK   ++ +EK      +
Sbjct: 228  IEDDDQGMMDFDEEDFDEPMEAKHVETVPETAESLKRDKEIEKKETEQLESEKKETSLLS 287

Query: 301  AGWKEVSGGNMVLDEGKSGLNCQESEFEVD---------DDGSLPFYILDAHEQLSGANM 351
                ++S  + + DE ++ L   E + + D         DD  L FY LDA+E    +  
Sbjct: 288  CSLPDISCWDRI-DEDEADLVVAEVQLDPDLLPLVNGENDDQVLRFYWLDAYED-QYSQP 345

Query: 352  GTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM 409
            G ++LFGKV  ++ +T+ SCCV VKN++R VY +P     +T+  +   K+ E + ++ M
Sbjct: 346  GVVFLFGKVWIESANTYVSCCVTVKNIERTVYLLPR----ETEFDLSTGKETE-TPVTIM 400

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
            +  K+  D  +  K +I           +    V++ YAF   +IPA   Y L++ Y  +
Sbjct: 401  SVFKEFND-CISPKYKIMK---------FKSKKVEKYYAFEIPDIPAKSEY-LEVKYSAE 449

Query: 470  DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEI 529
             P LP DLKG+ F  + GT++S+LEL L+ RK+KGP WL I   +  P+ Q VSWCK E 
Sbjct: 450  CPRLPQDLKGQTFSHIFGTNTSSLELLLLSRKIKGPCWLEIK--NPQPSSQSVSWCKVEA 507

Query: 530  TVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
                P  + V    K +   PP+ V ++++KT  N +   NEIV+ + +   K  +D   
Sbjct: 508  VAVKPGLVNVV---KDLCPPPPIVVMSLSIKTTQNPKTHQNEIVAVAALIHQKFPLDKAP 564

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
                  +P   +HF  V K +  IFP  F +    +N+K     +   ++ER LL   + 
Sbjct: 565  -----PQPPFQTHFCAVSKPNDCIFPYDFKEVIKKKNAK-----IEITATERTLLGFFLA 614

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +++K+D DV+VGHNI GFDL+VLL R  VC+VP   WSKIGRL+RS MPKL  GR  F  
Sbjct: 615  KIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVPH--WSKIGRLRRSNMPKL-GGRGGFAE 671

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL 769
                   S   GR++CD  + +++L+R  SY L++L +  L  ++  + P ++  M+   
Sbjct: 672  ------RSAACGRMICDVEISAKELIRCKSYHLSELVRQILKIEKITILPEEIRNMYSDS 725

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
              LM ++E   TDA   +++M  L+VLPL  Q+TNISGN+  +T+ G R++R E+LLLHA
Sbjct: 726  RHLMFMLENTWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHA 785

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
            F  K YIVPDK  + K                 +++L +ED +F++    N  + GK+  
Sbjct: 786  FYEKDYIVPDKQVFKKP----------------LQKLVDEDEDFED---QNKSKIGKKKA 826

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------SPDGL 938
            AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R           + +  
Sbjct: 827  AYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRLSSEAQKRAEVNEEEE 886

Query: 939  VPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSM 994
            +P LP  S   G+LP+ ++ LV+RRR VK  MK       L + Q DI+Q+ALKLTANSM
Sbjct: 887  IPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYL-QYDIRQKALKLTANSM 945

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTDSIMI++   ++
Sbjct: 946  YGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ-KMNLEVIYGDTDSIMINTNSTNL 1004

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERK 1113
             +   +  K+  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG      E K
Sbjct: 1005 DEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTKQELK 1064

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GLD+VRRDW  L+KE G++ +SQILS++  + +VE+I   L+++ E++ +GQ+ + ++ I
Sbjct: 1065 GLDIVRRDWCDLAKETGNYIISQILSDQPRDIIVENIQRRLIEIGENVINGQIPVNQFEI 1124

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
             K LTK P+ YPD K+ PHV VA+ +   G      AGDTV YIIC       GS +  +
Sbjct: 1125 NKALTKDPQDYPDKKSLPHVHVAMWINSQG-GRKVKAGDTVSYIIC-----QDGSDLSAS 1178

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS 1293
            QRA  P++L+K  G   ID  YY SQQIHPVV+R+C  IEG     +A  LGLDPS+F+ 
Sbjct: 1179 QRAYAPEQLQK-QGNLTIDTQYYLSQQIHPVVARICEPIEGIDSVLIATWLGLDPSQFRV 1237

Query: 1294 KPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSS------TFDCPAVCSSI 1343
                    D  +  L      + DEE+YR CE     CP C +       FD        
Sbjct: 1238 --HHHYHKDEENDALLGGPAQLTDEEKYRDCERFKFCCPKCGTENIYDNVFDGSGRFLEP 1295

Query: 1344 CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
             +    K    E+ +N    +                    N++      F+  YY G +
Sbjct: 1296 SLQRCSKTECEESPFNHVVQMN-------------------NKLLLDIRRFIRKYYHGWL 1336

Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLD 1462
            +C++ TC+  T  + L     +  G VC     C   ++R +Y++  LY QL ++ ++ D
Sbjct: 1337 ICEEPTCQNRTRRVPLHF---SRSGPVC---QACRKAVLRPEYSDKALYTQLCFYRYIFD 1390

Query: 1463 TQRGIEKM 1470
                 +K+
Sbjct: 1391 LDYAKDKV 1398


>gi|449483061|ref|XP_004174992.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
            subunit [Taeniopygia guttata]
          Length = 1750

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1528 (35%), Positives = 806/1528 (52%), Gaps = 201/1528 (13%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
             + EALERLK  +     +G+ + Y ++    +YD + EDEY  +V  R  +   +IVDD
Sbjct: 246  GQQEALERLKKAK-----AGEKLKYEVEEFTGVYDEIDEDEYSKMV--RDRQDDDWIVDD 298

Query: 81   DGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQ---RSIKKQRIEKRGKKENNQNVRKP 134
            DG+GY ++G+E   ED          DD++L      R  K   I+K+  K++   V KP
Sbjct: 299  DGIGYVEDGREIFDEDL---------DDDALISNKKGRGGKTSTIDKKNVKKSV--VSKP 347

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRR 194
            N   +   A  GK+       +      SKD+ + +    I     + +P      +R+R
Sbjct: 348  NTIKSMFMASAGKK------NTDKTVDLSKDDLLGDILQDISAETVQLSPPPVIMLKRKR 401

Query: 195  S---------VSSNIKSFVSVNSVKTNSQL----------------VTNSTNSVKENSDL 229
            S         V S     ++  S K  + +                 T  +  V EN D 
Sbjct: 402  SAGVPLNPFSVQSQTSKVITPVSKKAPAHVRKETLPPASFHPKHPNYTAKSVRVSENEDT 461

Query: 230  INNFVQIQNCDVVEESKELKWESDNSTELT-KRDNF--------VEVKEKVKDEVNEDVK 280
             +    IQN  +V+   E   + D+   +    ++F        VE   +  + + +D +
Sbjct: 462  KHVQKPIQNEILVKAVGEKATKDDDQGMMHFDEEDFDEPMEAEHVETIPETAESLKKDSE 521

Query: 281  ECKKLNAKISTEKD--PLLSATAG---WKEVSGGNMVLDEGKSGLNCQESEFEVD----- 330
              KK   ++ +EK    +LS+  G   W  +       DE ++ L   E + + +     
Sbjct: 522  IEKKETEQLESEKKETSVLSSLPGLSCWDRI-------DEDEADLATAEVQLDPNLLPLV 574

Query: 331  ----DDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP 384
                 D  L FY LDA+E    +  G ++LFGKV  ++ +T+ SCCV VKN++R VY +P
Sbjct: 575  NGESGDQVLRFYWLDAYED-QFSQPGVIFLFGKVWIESAATYVSCCVTVKNIERTVYLLP 633

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                 +T+  +   K+ E + ++ M+  K+  D  +  K +I           +    V+
Sbjct: 634  R----ETEIDLSTGKETE-TPVTIMSVFKEFNDT-ISPKYKIMK---------FKSKKVE 678

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            + YAF   ++PA   Y L++ Y  + P LP DLKG+ F  + GT++S+LEL L+ +K+KG
Sbjct: 679  KYYAFEIPDVPAKSEY-LEVKYSAECPRLPQDLKGQTFSHVFGTNTSSLELLLMNQKIKG 737

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P WL I   +  P+   VSWCK E     P  + V    K ++  PP+ V + ++KT  N
Sbjct: 738  PCWLEIK--NPQPSNPPVSWCKVEAVAMKPGLVNVV---KDLSPPPPLVVMSFSMKTTQN 792

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
             +   NE+V+ + +   K  +D         +P   +HF  V K    IFP  F +    
Sbjct: 793  PKTHQNEVVALAALVHQKFPLD-----KAPPQPPFQTHFCAVSKPSDCIFPYDFKEAVKK 847

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            +N+K     +   ++ER LL   + +++K+D DV+VGHNI GFDL+VLL R  +C+VP  
Sbjct: 848  KNAK-----IEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINLCKVPH- 901

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             WSKIGRL+RS MPKL  GR  F         +   GR++CD  + +++L+R  SY L++
Sbjct: 902  -WSKIGRLRRSNMPKL-GGRGGFAE------RNAACGRMICDVEISAKELIRCKSYHLSE 953

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            L    L  ++  + P ++  M+     L+ ++E    DA   +++M  L+VLPL  Q+TN
Sbjct: 954  LVHQILKTEKITILPEEIPNMYSDSPRLLFMLENTWIDAKFILQIMCELNVLPLALQITN 1013

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ISGN+  +T+ G R++R E+LLLHAF  K YIVPDK  + K                  +
Sbjct: 1014 ISGNVMSRTMMGGRSERNEFLLLHAFHEKDYIVPDKQVFKKPP----------------Q 1057

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            +L +ED +F++    N  + GK+  AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQE+
Sbjct: 1058 KLVDEDEDFED---QNKSKIGKKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEF 1114

Query: 925  NICFTTVER-----------SPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            NICFTTV+R             +  +P LP  S   G+LP+ ++ LV+RRR VK  MK  
Sbjct: 1115 NICFTTVQRLSSEAQKRAETEEEEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQP 1174

Query: 973  S---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
                 L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++V
Sbjct: 1175 DLNPDLYL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMV 1233

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            Q  +NLEVIYGDTDSIMI++    + +   +  K+  EVNK YK LEID+DG++K +LLL
Sbjct: 1234 Q-KMNLEVIYGDTDSIMINTNSTSLDEVFKLGNKIKSEVNKLYKLLEIDIDGIFKSLLLL 1292

Query: 1090 KKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            KKKKYAA+ V+   DG      E KGLD+VRRDW  L+K+ G++ + QILS++  + +VE
Sbjct: 1293 KKKKYAALSVEPTGDGKYVTKQELKGLDIVRRDWCDLAKQTGNYVIGQILSDQPRDIIVE 1352

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            +I   LM++ E++ SGQ+   ++ I + LTK P+ YPD K  PHV VA+ +   G     
Sbjct: 1353 NIQRRLMEIGENVVSGQIPANQFEINRALTKDPQDYPDKKALPHVHVAMWINSHG-GRKV 1411

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
             AGDTV YIIC       GS +  +QRA  P++LKK +    ID  YY SQQIHPVV+R+
Sbjct: 1412 KAGDTVSYIIC-----QDGSDLSASQRAYAPEQLKKQEN-LKIDNQYYLSQQIHPVVARI 1465

Query: 1269 CASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLIL 1325
            C  IEG     +A  LGLDPS+F+         D + +L+     + DEE+YR CE    
Sbjct: 1466 CVPIEGIDSVLIATWLGLDPSQFRVH--HHYHKDENDALVGGPAQLTDEEKYRDCERFKF 1523

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK--CPEEVEAGRISPGMI 1383
             C  C +         +I  +V +   +    +     LRC K  C E   +  +    +
Sbjct: 1524 CCLKCGT--------ENIYDNVFDGSGR----FIEPSLLRCSKTECDEPPFSYVVQ---M 1568

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR 1443
             N++      ++  YY G ++C++ TC+  T  L L     +  G VC     C   +++
Sbjct: 1569 NNKLLLDIRRYLRKYYSGWLICEEPTCQNRTRRLPLSF---SRSGPVCQA---CRKAVLK 1622

Query: 1444 -KYTEADLYKQLTYFCHLLDTQRGIEKM 1470
             +Y++  LY QL ++ ++ D    ++K+
Sbjct: 1623 PEYSDKALYTQLCFYRYIFDVDYAMDKV 1650


>gi|431895111|gb|ELK04902.1| DNA polymerase alpha catalytic subunit [Pteropus alecto]
          Length = 1483

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1192 (38%), Positives = 660/1192 (55%), Gaps = 137/1192 (11%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            D++    FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P   
Sbjct: 363  DEEQVFQFYWLDAYEDQYN-QPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPRE- 420

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
                    K++ +  +   +P+     ++DV      +IA +   +   + IV   ++ Y
Sbjct: 421  -------TKIDLNTGKETGTPVT----MKDVYDEFDEKIAAKYKIMKFKSKIV---EKNY 466

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   +IP    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP W
Sbjct: 467  AFEIPDIPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 525

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L +        P   SWCK E     P  + V          PP+ V + ++KT+ N + 
Sbjct: 526  LEVKNPQLSNQP--FSWCKVEAMALKPDLVNVMMD----VGPPPLVVMSFSMKTMQNAKT 579

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEI++ + +  +   +D         +P   SHF VV K    IFP  F+++   +N 
Sbjct: 580  HQNEIIAVAALVHYSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYAFSEDIKKKNV 634

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K         ++ER LL   + +++K+D DV+VGHNI GF+L+VLL R  VC+VP   WS
Sbjct: 635  KVE-----VAATERTLLGFFLAKVHKIDPDVIVGHNIYGFELEVLLQRINVCKVP--YWS 687

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRLKRS MPKL  G++ FG        +   GR++CD  + +++L+R  SY L++L +
Sbjct: 688  KIGRLKRSNMPKL-GGKSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQ 740

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  +   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+G
Sbjct: 741  QILKTERVVISMENVRNMYSEPSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAG 800

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G RA+R E+LLLHAF    YIVPDK  + K                  ++L 
Sbjct: 801  NIMSRTLMGGRAERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLG 844

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +ED   D D  +N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NIC
Sbjct: 845  DEDEEIDGD--NNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNIC 902

Query: 928  FTTVERSPDGL-----------VPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--S 973
            FTTV+R                +P LP  S   G+LP  ++ LV+RR+ VK  MK    +
Sbjct: 903  FTTVQRVASEAQKVTEDEEQEQIPELPDPSLDMGILPREIRKLVERRKQVKQLMKQQDLN 962

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
               + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +
Sbjct: 963  PDLVLQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTYKGREILMHTKEMVQ-KM 1021

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKK
Sbjct: 1022 NLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKK 1081

Query: 1094 YAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            YAA+ V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I  
Sbjct: 1082 YAALVVEPTSDGNYSTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQK 1141

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L+++ E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGD
Sbjct: 1142 RLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGD 1200

Query: 1213 TVPYIICCEQ--------------GTS--------------SGSSVGIAQRARHPDELKK 1244
            TV Y+IC                 GT                GS++  +QRA  P++L+K
Sbjct: 1201 TVSYVICQMHVKYSPVDRKDFLVFGTEYTKSELLSLFLAKRDGSNLSASQRAYAPEQLQK 1260

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
             D    ID  YY +QQIHPVV+R+C  I+G     +A  LGLDP++F+         D  
Sbjct: 1261 QDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAILIASWLGLDPTQFR---VHHYHKDEE 1316

Query: 1305 SSLLFA----VGDEERYRGCEPLILSCPSCS--STFDCPAVCSSICMSVSEKPSKPETEY 1358
            + +L      + DEE+YR CE     CP+C   + +D    CS  C  +      P   +
Sbjct: 1317 NDVLLGGPAQLTDEEKYRDCERFKCPCPACGIENIYDSVFECSVSCFFLV-----PFYIF 1371

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
            N    + C   P            + N++      ++  YY+G ++C++ TC+  T  L 
Sbjct: 1372 N----IDCKTSPLNFMV------QLNNKLILDIRRYIRKYYQGWLICEEPTCRNRTRHLP 1421

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
            L+   +     VC         L  +Y++  LY QL ++ ++ D    +EK+
Sbjct: 1422 LQFSRNGPLCQVC-----MKATLRPEYSDKSLYTQLCFYRYIFDVDYALEKL 1468


>gi|195995451|ref|XP_002107594.1| hypothetical protein TRIADDRAFT_49541 [Trichoplax adhaerens]
 gi|190588370|gb|EDV28392.1| hypothetical protein TRIADDRAFT_49541 [Trichoplax adhaerens]
          Length = 1203

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1198 (38%), Positives = 665/1198 (55%), Gaps = 159/1198 (13%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAG-STHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
            + F+  DA+E  S    G +YLFGKVK   + + SCC++VKN++R +Y +P         
Sbjct: 135  IDFFWFDAYEDPS-LQKGIIYLFGKVKTKENAYASCCLIVKNIERDIYILPRK------- 186

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN-VSNYIVSPVKRRYAFGQA 452
              +L+ D  +S I          +V +    E  +++ N N +  +     K+RYAF   
Sbjct: 187  -TRLDTDGSDSGI----------EVTMKDVYEEFSEICNKNKIMTFRSRVTKKRYAFELK 235

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS- 511
            ++P    Y L + Y    P + +D++G+ F  + GT++S+LE FL+  K+ GP+WL I  
Sbjct: 236  DVPVESEY-LHVKYSAALPQIKSDMQGQTFSHVFGTNTSSLESFLLHNKIMGPNWLRIRN 294

Query: 512  -KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
             +F S    Q+VS+C+ E                        T+ + ++KT+ N +   N
Sbjct: 295  PQFPS----QKVSYCRSE------------------------TILSFSMKTIINPKTHEN 326

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EIV+ + V       D P   S ++      HF V+R L     PMGF      +N    
Sbjct: 327  EIVAIAAVTHQSFYFDKPPPKSLFE-----GHFVVIRNLVDHNIPMGFRDFMKQKNIN-- 379

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
               L   S+ERALL+  + ++ ++D D++VGHNI GFD+DV+LHR   C+V  S+WS+IG
Sbjct: 380  ---LEISSTERALLSFWLAKVQQIDPDIIVGHNICGFDIDVILHRMNTCKV--SLWSRIG 434

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
            R+KR  MPKL    T+ G G +     C  GRL+CD    +++L+R  SY LT+L    L
Sbjct: 435  RIKRHAMPKL--SSTVGGFGFADRSACC--GRLICDAKTSAKELIRVKSYDLTELTSYVL 490

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
               R ++   ++   F ++            DA  ++ +++ L+ LPL  Q+TNI GN+ 
Sbjct: 491  KAKRFDINQDEIADKFNSM------------DATFALRIVYELNALPLALQITNIVGNVL 538

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             +TL G R++R E+LLLHAF  K ++ PDK      +   KQ+ N   ED +        
Sbjct: 539  SRTLLGGRSERNEFLLLHAFSEKDFVCPDK------SFKKKQQFNEEFEDHD-------- 584

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                 D + +++R+ K  PAY+GGLVLEPKKG YDKYILLLDFNSLYP+IIQE+NIC TT
Sbjct: 585  -----DAAKSNNRRKK--PAYSGGLVLEPKKGFYDKYILLLDFNSLYPTIIQEFNICLTT 637

Query: 931  VER--------SPDGLVPHLPSSKTT-GVLPELLKNLVQRRRMV-KTWMKTASGLK--IQ 978
            V+R        + + L    PS     GVLP +LK LV+RRR     +++    +   + 
Sbjct: 638  VDRHHLAADENNDNELECEYPSPDLEPGVLPLILKGLVERRREYGHLYLRLIFLIHRLVL 697

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q DI+Q+ALKLTANS+YGCLGFSNSRFYAKPLA L+T +GREIL    +LV+N + LEVI
Sbjct: 698  QYDIRQKALKLTANSLYGCLGFSNSRFYAKPLAALVTSKGREILTKAKELVENQMLLEVI 757

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMI++   ++ +A  +  KV  E+NK ++ LEID+DG++K MLLLKKKKYAA+ 
Sbjct: 758  YGDTDSIMINTNSTNLDEAYNLGHKVKAEINKSHRLLEIDIDGVFKSMLLLKKKKYAALA 817

Query: 1099 VQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
            +Q  +DG   EV E KGLD+VRRDW  L+K+VG++ LSQILS  S E++V+ IH+ L +V
Sbjct: 818  IQKNEDGTLSEVKELKGLDIVRRDWCQLAKDVGNYALSQILSSDSRENIVDKIHSYLTEV 877

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             +D+RSG++ ++KYVI KTL+K P  YPD K+ PH+ VAL ++    +     GD VPY+
Sbjct: 878  GDDVRSGRIDIDKYVILKTLSKSPNDYPDKKSLPHIHVALWMQTE--NRRVQIGDAVPYV 935

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            IC       GS + +AQRA HPD+ ++ D    ID  YY + QIHPVVSRLC  IEGT  
Sbjct: 936  IC-----DDGSQLNVAQRAFHPDQFRRSDS-LKIDFKYYLAYQIHPVVSRLCDPIEGTDS 989

Query: 1278 ERLADCLGLDPSKFQSKPSETMSSDPSSSLL--FAVGDEERYRGCEPLILSCPSCSSTFD 1335
             R+ADCLGLD S+++ K S +   + S ++L    +  EE+++  EPL +SCP C  T D
Sbjct: 990  ARIADCLGLDGSQYKHK-SYSAEQNESDAMLGDMHMSLEEQFKNVEPLKISCPKCKVTED 1048

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
                 +        K +K          L CP C             I N+V  +   F+
Sbjct: 1049 FAGAYN--------KTTKQS-------GLVCPHCNSNYNV-----VTIQNKVVSEIRKFI 1088

Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
              YY+  M CDD +C Y        + G   R   CP   R  G L   Y+E  LY Q+ 
Sbjct: 1089 KTYYQNWMQCDDPSCDYKMRQAPYFISG---RTIRCPACER--GHLTLTYSEKSLYNQIL 1143

Query: 1456 YFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            Y+ HL D    I+++E   +I        I+        TV +I  R  Y  + L+ +
Sbjct: 1144 YYQHLFD----IDQIEKGIRID-----QNIKADFKNLYGTVNKIISRNGYSEINLSKL 1192


>gi|62086801|dbj|BAD92007.1| DNA polymerase alpha catalytic subunit [Ambystoma mexicanum]
          Length = 1409

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1208 (38%), Positives = 674/1208 (55%), Gaps = 119/1208 (9%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            D D    FY LDA+E       G +YLFGKV  ++   H SCC+ VKN++R VY +P   
Sbjct: 283  DGDQVFRFYWLDAYEDQYN-QPGVVYLFGKVWIESAEAHVSCCLTVKNIERTVYLLPRE- 340

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
                    +++  + +   +P++     Q+        IA +     +  +    +++ Y
Sbjct: 341  -------TQVDLSSGKETGTPVSMMNVYQE----FNERIAEKF---KLMKFKSKKIEKNY 386

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA   Y L++ Y  + PPLP DLKGE F  + GT++S+LELFL+ RK+KGPSW
Sbjct: 387  AFEIPDVPANSEY-LEVRYSAELPPLPKDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 445

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   +   + Q VSWCK E     P  + V          PP+ V A+++KTV N + 
Sbjct: 446  LEIK--TPQLSFQPVSWCKVEAVALKPDLVSVVKD----LPPPPLVVMALSMKTVQNAKT 499

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEIV+ SV+  HK  +D         +P   +HF VV K    IFP  + +    +N+
Sbjct: 500  HQNEIVAISVLAHHKFPLD-----KAPPQPPFQTHFCVVCKPSDCIFPYDYKEAIKQKNA 554

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
                 +     +ER LL  L+ +++K+D DV+VGH+I GFDL+VLL R  VC+VP   WS
Sbjct: 555  NIEVAL-----TERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQRINVCKVPH--WS 607

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR+ F    +    +C  GR++CD  + +++L+R  SY L++L  
Sbjct: 608  KIGRLRRSIMPKL-GGRSGFAERNA----AC--GRMICDVQISAKELIRCKSYHLSELVH 660

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  +   ++   +     L+ ++E+   D    +++M  L+VLPL  Q+TNI+G
Sbjct: 661  QILKTERLIIPGENIRNYYSDSPQLLYMLEHTWLDTKFILQIMCELNVLPLALQITNIAG 720

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R EYLLLHAF    +IVPDK T+ K                 ++ L 
Sbjct: 721  NVMSRTLMGGRSERNEYLLLHAFYENNFIVPDKPTFKKP----------------LQNLV 764

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +ED + +ND      +K ++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NIC
Sbjct: 765  DEDEDIEND--QGKQKKVRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNIC 822

Query: 928  FTTVER-------SPDGL----VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGL 975
            FTTV+R        P+G     +P LP      G+LP  ++ LV+RRR VK  MK  S L
Sbjct: 823  FTTVQRLDSNAQKMPEGEEQDDIPQLPDPDLELGILPREIRKLVERRRQVKQLMKQ-SDL 881

Query: 976  K---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
                  Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T D+VQ  
Sbjct: 882  NPDLYMQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILLHTRDMVQK- 940

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            +NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKK
Sbjct: 941  MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKQLEIDIDGVFKSLLLLKKK 1000

Query: 1093 KYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KYAA+ ++   DG      E KGLD+VRRDW  L+KE G++ ++QILS++  + +VE+I 
Sbjct: 1001 KYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLAKETGNYIITQILSDQPRDTIVENIQ 1060

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
              L+++ E++ +G + + +Y I K LTK P+ YPD K+ PHV VAL +   G      AG
Sbjct: 1061 KQLIEIGENVVNGSIPINQYEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKMKAG 1119

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            DTV YIIC       GS++  +QRA   ++L+K D    ID  YY SQQ+HPVV+R+C  
Sbjct: 1120 DTVSYIIC-----QDGSNLSASQRAYALEQLQKQDN-LAIDTQYYLSQQVHPVVARICEP 1173

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCP 1328
            I+G     +A  LGLDPS+F+ + S     + + ++L     + DEE+Y+ CE    +CP
Sbjct: 1174 IDGIDSALIAAWLGLDPSQFRVQ-SHYQKDEENDAMLGGPSQITDEEKYKDCERFKFTCP 1232

Query: 1329 SCSS--TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IAN 1385
            +C +   +D     S   M    K              RC  C  E +A  +   + + N
Sbjct: 1233 ACGTEGIYDNAFDGSGALMEPILK--------------RC--CKPECDASPMHFVIQLQN 1276

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-K 1444
            ++       +  YY    +C++ TC+  T  L L     +  G +C     C    +R +
Sbjct: 1277 KLHLDIRRHIKKYYSAWFICEEPTCQNRTRRLPLNF---SRNGPIC---QACMKATLRPE 1330

Query: 1445 YTEADLYKQLTYFCHLLDTQRGIEK--MEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
            Y +  LY QL ++ ++ D +   EK   ++  ++  + EL+    V      TV R    
Sbjct: 1331 YPDKALYTQLCFYRYIFDLEYTKEKSVSDVEKRLLKDAELDGTDVVYKRLKGTVDRCLSS 1390

Query: 1503 CAYGWVKL 1510
              Y  V L
Sbjct: 1391 SGYSEVNL 1398


>gi|393236145|gb|EJD43695.1| hypothetical protein AURDEDRAFT_88520 [Auricularia delicata TFB-10046
            SS5]
          Length = 1449

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1217 (36%), Positives = 664/1217 (54%), Gaps = 118/1217 (9%)

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVV 373
            G+    C ES      DGS  F+ LDA+E       G ++  GK +   T    SCCV V
Sbjct: 325  GEQSAKCLES------DGSFRFFWLDAYEA-----DGKVHFIGKCRDKDTKAWISCCVTV 373

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            +NM+R +Y +            +L+ D  E+ I P       +DV      ++A      
Sbjct: 374  ENMERNLYVLKRQ--------KQLDDDENETDIIPTD-----EDVW----ADVAAIRRQA 416

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
             +S++    V+R+YAFG+ +IP G++  L++ Y F  P LP+++   N   +LGT++SA 
Sbjct: 417  GISSWKAKWVERQYAFGEKDIPTGKHPWLEVVYSFNHPALPSNIMTPNIARILGTNTSAF 476

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV--SSSSKHVAEVPP 551
            EL ++KR++ GP WL+I + +    P  +SW ++E+ V +P+DI     S  K   E+PP
Sbjct: 477  ELLVMKRRIMGPCWLNIKQPTKTEKP--ISWTRFEVIVSNPEDINPFPDSDDKAPRELPP 534

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH--FTVVRKL 609
            + + ++ L+T+ N   +  EIV A+        I+   L      P    H   T VR L
Sbjct: 535  LNIMSLTLRTIVNHETNQREIVVAATRIWPNYAIEDEKL------PESTPHTKHTFVRPL 588

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
            +   +P  F   A  +       +  C ++E  LL+ L++   K D DV+VGH+  G DL
Sbjct: 589  EENKWPPQFKDVARQKG------ITTC-ANEFELLSHLLVLTQKADPDVIVGHDFVGVDL 641

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TF 728
            DVLLHR +  +  S  WS++ R +R + P + K  T          +  ++GRL+CD + 
Sbjct: 642  DVLLHRLRAHK--SRNWSRVSRFRRQQWPHIGKQGTN---------LKFLSGRLVCDLSS 690

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAW 784
              ++ ++   ++S+T++ KT L ++R+++ P+D    F    S    L+E +++ E DA+
Sbjct: 691  DGAKGMISSTTWSMTEICKTHLGQEREDIDPNDTGARFDHTVSAPKILVEFVQHCEVDAF 750

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
              M +   + +LPLT QLTN++GN W KTL G RA+R EY+LLH F    YI PDK TY 
Sbjct: 751  FQMAIADKVQILPLTLQLTNLAGNAWNKTLNGGRAERNEYILLHEFYKLGYICPDK-TYG 809

Query: 845  KETKMA-KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
            K++ +A K  +  G                  D +     KGKR   Y GGLVL+PK+GL
Sbjct: 810  KKSALAVKAEAEEG------------------DDAAAVTSKGKRD-KYKGGLVLQPKRGL 850

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP----SSKTTGVLPELLKNLV 959
            +DKYIL++DFNSLYPSIIQEYNI +TT++ S       LP    + K  GV+P ++K LV
Sbjct: 851  WDKYILVMDFNSLYPSIIQEYNIDYTTIDISQFLDTDELPEKPDADKAEGVMPRVIKELV 910

Query: 960  QRRRMVKTWMKTAS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            QRR+ VK  MK  +    + +Q DI+QQALKLTANSMYGCLGF  SRFYA+PLA L T  
Sbjct: 911  QRRQQVKKLMKAPNLPEARRKQYDIRQQALKLTANSMYGCLGFEYSRFYARPLAALTTFM 970

Query: 1018 GREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEI 1077
            GRE LR T + V   + ++V+YGDTDS+ ++S    I +AK IA +  + VN++YK LEI
Sbjct: 971  GREALRRTCE-VAEGMGIDVVYGDTDSVFLNSNKLTIKEAKEIANEFKKLVNEQYKRLEI 1029

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            DLDG+++R+LLL+KKKYAA+KV   D       E KGLDM RR++  LSK++    L  I
Sbjct: 1030 DLDGIFERLLLLQKKKYAALKVDGTDENKTTTKEVKGLDMKRREYCALSKDMSQKILDVI 1089

Query: 1138 LSERSCED-VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            L  +   D VVE IH  L+ ++E++ SG + LE+++I K L K PEAYPD K+QPHVQVA
Sbjct: 1090 LDPKMSSDVVVEKIHEGLIALRENVTSGNIPLEQFIINKRLGKEPEAYPDGKSQPHVQVA 1149

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
            LR+K    +    AGD +PY+ C     S       A +A HPDE++K  GK  ID D+Y
Sbjct: 1150 LRMKLRNAT--ARAGDVIPYVFC----KSDADKASQADKAHHPDEVRKSGGKLQIDYDFY 1203

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEER 1316
             + QI P   RLC  IEGT   RLA+CLGLDP ++Q             SL   V D ER
Sbjct: 1204 LANQILPPAERLCDPIEGTDRARLAECLGLDPRRYQVTVVGETEERAFGSLESQVPDTER 1263

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
            ++ CEP ++ C  C+++F      SS+  + S +  +          L CP C +     
Sbjct: 1264 FKECEPFVVRCRGCTNSF----AFSSLGQTDSAEGDQKNAGITPAGCL-CPGCKKP---- 1314

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR 1436
             +    +  Q++ Q    VS +Y+G  +C + TC++ T  +++        G  C   P 
Sbjct: 1315 -LGTASVQVQLEMQIRRHVSRFYEGWTVCQEATCRHRTRMMSV-------YGRRCLK-PG 1365

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTV 1496
            C G++  +Y +A +Y QL Y   L D  + I K + + +  L   +   R ++    S+V
Sbjct: 1366 CTGKVALEYQDAAIYTQLAYLRSLFDGDKAISKAKAARQDELRALVGLNRGLLEDLLSSV 1425

Query: 1497 QRIRERCAYGWVKLNDI 1513
             R  + C   WV + ++
Sbjct: 1426 DRYMDMCGRRWVDMKEM 1442


>gi|62086803|dbj|BAD92008.1| DNA polymerase alpha catalytic subunit [Trachemys scripta]
          Length = 1441

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1172 (37%), Positives = 667/1172 (56%), Gaps = 130/1172 (11%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            D D    FY LDA+E    +  G ++LFGKV  ++  T+ SCCV VKN++R +Y +P   
Sbjct: 306  DGDQVFRFYWLDAYED-QYSQPGVVFLFGKVWIESAETYVSCCVTVKNIERIIYLLPRE- 363

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL-LNLNVSNYIVSPVKRR 446
                   M+++  + +   +P+          + +  E  +Q+ +   +  +    V++ 
Sbjct: 364  -------MQMDLTSGKETENPVTM--------MNIYQEFNDQIAVKYKIMKFRSKKVEKN 408

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++PA  +Y L++ Y  + P LP DLKGE F  + GT++S+LEL L+ RK+KGPS
Sbjct: 409  YAFEIPDVPAKSDY-LEVRYSAEFPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPS 467

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +  P    VSWCK E T   P  + +          PP+ + +++++T+ N +
Sbjct: 468  WLEIK--NPQPLSHPVSWCKVEATALKPDLVNIVKD----LPPPPLVIMSLSMRTIQNVK 521

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
               +E+++ + +   +  +D         +P   +HF V+ K +  IFP  F +    +N
Sbjct: 522  THQHEVMAVAALVHQRFCLDKAP-----PQPPFQTHFCVISKPNDCIFPYDFKEIIKSKN 576

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S          ++ER LL   + +++K+D D++VGHNI GFDL+VLL R  V +VP   W
Sbjct: 577  SNVE-----IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINVSKVPH--W 629

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            SKIGRL+RS MPKL  GR  F    +    +C  GR++CD  + +++L+R  SY L++L 
Sbjct: 630  SKIGRLRRSIMPKL-GGRGGFAERNA----AC--GRMICDVEISAKELIRCKSYHLSELV 682

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
               L  +R  + P ++  M+     L+ ++E   TDA   +++M  L+VLPL  Q+TNIS
Sbjct: 683  HQILKTERITIPPEEIRNMYSDSSHLLYMLENTWTDARFILQIMCELNVLPLALQITNIS 742

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK-ETKMAKQRSNHGVEDRNVEE 865
            GN+  +T+ G R++R E+LLLHAF  + YIVPDK  + K + K+  +  + GVED+N  +
Sbjct: 743  GNVMSRTMMGGRSERNEFLLLHAFYERDYIVPDKQVFKKPQQKLVDE--DEGVEDQNKSK 800

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
            +                  G++  AYAGGLVL+PK G YD +ILLLDFNSLYPSIIQE+N
Sbjct: 801  I------------------GRKKAAYAGGLVLDPKVGFYDTFILLLDFNSLYPSIIQEFN 842

Query: 926  ICFTTVE--------RSPDGL---VPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
            ICFTTV+        R+ DG+   +P LP  S   G+LP+ ++ LV+RRR VK  MK   
Sbjct: 843  ICFTTVQRESSDAQKRAEDGVQEEIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPD 902

Query: 974  ---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ
Sbjct: 903  LNPDLYL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ 961

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
              +NLEVIYGDTDSIMI++   ++ +   +  K+  EVNK YK LEID+DG++K +LLLK
Sbjct: 962  -KMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKSEVNKLYKLLEIDIDGVFKSLLLLK 1020

Query: 1091 KKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
            KKKYAA+ V+   DG      E KGLD+VRRDW  L+KE G++ + QILS++S + +VE+
Sbjct: 1021 KKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQSRDTIVEN 1080

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            I   L+++ E++ +G+V + ++ I K LTK P+ YPD K+ PHV VA+ +  S       
Sbjct: 1081 IQRRLIEIGENVINGRVPISQFEINKALTKDPQDYPDKKSLPHVHVAMWI-NSQEGRKVK 1139

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            AGDTV Y+IC       GS++  +QRA  P++L+K +    +D  YY SQQIHPVV+R+C
Sbjct: 1140 AGDTVSYVIC-----QDGSNLSASQRAYAPEQLQKQEN-LTVDTQYYLSQQIHPVVARIC 1193

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLIL 1325
              I+G     +A  LGLDPS+F  K       D  +  L      + DEE+YR CE    
Sbjct: 1194 EPIDGIDSVLIATWLGLDPSQF--KIHHHYHKDEENDALLGGPAQLTDEEKYRDCERFKF 1251

Query: 1326 SCPSCSS------TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            SCP C +       FD         +    K    E+ +N+  T++              
Sbjct: 1252 SCPRCGTENIYDNVFDGSGKLMEPSLQQCSKKECDESPFNY--TIQ-------------- 1295

Query: 1380 PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNG 1439
               + N++      ++  YY   ++C++ TC+  T  L L     ++ G +C     C  
Sbjct: 1296 ---MNNKLLLDIRRYLKSYYNSWLICEEPTCQNRTRRLPLSF---SQNGALC---QACKK 1346

Query: 1440 RLVR-KYTEADLYKQLTYFCHLLDTQRGIEKM 1470
             ++R +Y++  LY QL ++ ++ D    ++K+
Sbjct: 1347 AILRPEYSDKALYTQLCFYRYIFDVDYAMDKV 1378


>gi|392589707|gb|EIW79037.1| hypothetical protein CONPUDRAFT_126817 [Coniophora puteana RWD-64-598
            SS2]
          Length = 1433

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1202 (39%), Positives = 667/1202 (55%), Gaps = 112/1202 (9%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPL 388
            +DG+LPF+ LD  E LSG     L+L GKVK  +T    S C+ ++ +QR +Y +P    
Sbjct: 313  EDGTLPFFWLDFLE-LSG----KLFLTGKVKDRTTGAWASACLSIEGLQRNLYVLPRQLR 367

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
             +  E    E   +E+   P        DV  G    I  +L   ++ ++    V+R YA
Sbjct: 368  VEQVEDEDGEVSLQETEHPP-----SRADV-YGDFDRIRQRL---DIKSFKAKWVRRSYA 418

Query: 449  FGQAEIPAGENYVLKINYPFKDP-PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            F + ++P    + LK+ YPF+DP  +P D +  N   + GT++SA ELF++KRK+ GP W
Sbjct: 419  FDEKDVPKEAEW-LKVLYPFEDPHQVPMDAQSPNIARIFGTNTSAFELFVLKRKIMGPCW 477

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L++   ++    + +SWCK E +V  PKD  V+       E PP+T+ ++ ++TV N ++
Sbjct: 478  LNVR--NAVVENKGISWCKLEASVSDPKD--VTPMGDGAPEPPPLTIMSMTVRTVVNHKE 533

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
            +  EIV  +        +D P    +       S  T VR L+   FP  F  EA  + +
Sbjct: 534  NKREIVCVTSRIWRDVVLDDPTPPEQLP----CSVHTFVRPLER--FPPKF--EAQAKAN 585

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K G  ++    +ER LLN L++ LYK D DV+VGH+  G  LDVLL R +  +  +  WS
Sbjct: 586  KRG--LISPMLNERTLLNNLLVTLYKSDPDVIVGHDFLGVSLDVLLTRMRDLK--ADHWS 641

Query: 688  KIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLT 743
            ++ R +R++ P + R+G            M  + GR+LCD  L S   R ++   ++SLT
Sbjct: 642  RLSRFRRNKWPNIGRQGTN----------MRFLNGRMLCD--LASDGARSMIASTTWSLT 689

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFHLSVLPLT 799
            ++ KT L  DR+++ P D    F +  S    LM  + + E DA   M +   + +LPLT
Sbjct: 690  EMCKTHLKSDRQDIDPDDTASYFDSAVSAPDMLMTFVRHCELDAHYQMAIASKVQILPLT 749

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            RQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK TY K+ K   +      E
Sbjct: 750  RQLTNLAGNAWNKTLNGGRAERNEYILLHEFHRLKYICPDK-TYGKKVKPEPEPDEADEE 808

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
              N                            Y GGLV EPK+GL+DK+IL++DFNSLYPS
Sbjct: 809  GGNAAGGGGGGKASKAKRDK-----------YKGGLVFEPKRGLWDKFILVMDFNSLYPS 857

Query: 920  IIQEYNICFTTVERS---PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK--TAS 973
            IIQEYNI FTTVER    PD  +P  PSS    GVLP L+  LV RRR VK+ MK  +A+
Sbjct: 858  IIQEYNIDFTTVERQVDDPDDKIPEPPSSDVAQGVLPRLIATLVSRRRQVKSLMKDKSAT 917

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              K+ Q DI+QQALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  T +L ++ L
Sbjct: 918  PAKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTHTRELAES-L 976

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
             L+V+YGDTDS+ ++S + ++++A  I+ +  + VN +Y+ LEIDLDG++ R+LLL+KKK
Sbjct: 977  QLDVVYGDTDSVFVNSNVTELSEALKISNEFKKAVNDRYRLLEIDLDGVFARLLLLQKKK 1036

Query: 1094 YAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNS 1153
            YAA+KV+  DG      E KGLDM RR++  LSK V  + L QILS  + E VVE IH  
Sbjct: 1037 YAAIKVE--DGSRTST-EIKGLDMKRREYCALSKNVSQYVLDQILSGEATEIVVEQIHEY 1093

Query: 1154 LMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDT 1213
            L  V E++RSG++ ++ ++I K L K PE YPDAK+ PHV VALRLK  G S    AGD 
Sbjct: 1094 LTSVSENVRSGKIKVDDFIIFKRLGKNPEDYPDAKSLPHVHVALRLKAKGGS--ARAGDV 1151

Query: 1214 VPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM-IDIDYYASQQIHPVVSRLCASI 1272
            +PYI C   G  S S    A+RA+HPDEL++ D K + ID D+Y + QI P + RLC  I
Sbjct: 1152 IPYIFCVAPGEDS-SKTAQAERAKHPDELRRADTKELQIDYDHYLANQILPPIERLCEPI 1210

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSS 1332
            EGT   RLA+CLGLDPS+F+S  S   ++   ++L   + D ER+R   P ++ C  C  
Sbjct: 1211 EGTDRARLAECLGLDPSRFRSS-SAGEATTSFATLDSQITDAERFRDANPFLVRCRGCQG 1269

Query: 1333 TFD-CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
                 P      C+    +P+           + CP C     +  +S   +  Q++ Q 
Sbjct: 1270 QLAFSPLWEDDACV----RPT----------GVACPAC-----SAPLSTVSLQTQLEVQI 1310

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
               ++ YY+G  +CDD TC   T S+ +        G  C   P C G +  +Y++ +LY
Sbjct: 1311 RACIARYYEGWTVCDDTTCGNRTRSMRV-------YGRRCVQ-PECRGSVHFEYSDTELY 1362

Query: 1452 KQLTYFCHLLDTQRGIEKMEISAKIPLEKEL--NKI-RPVVALAASTVQRIRERCAYGWV 1508
             QL YF  L D  +       SA+      L  N I R  +   A+TV +  E+C   +V
Sbjct: 1363 NQLRYFATLFDEGKIKAAAAGSARKDAIDGLLANPISREFLETMAATVGKYVEQCGRRYV 1422

Query: 1509 KL 1510
             +
Sbjct: 1423 DM 1424


>gi|432093281|gb|ELK25464.1| DNA polymerase alpha catalytic subunit [Myotis davidii]
          Length = 1533

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1377 (36%), Positives = 735/1377 (53%), Gaps = 142/1377 (10%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRSRREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDFTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
            +Y  LV  R+++    IVDDDG+GY ++G+E         +    E  +  ++  K   E
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGVGYVEDGREIFDDDLEDDALDSQEIGNDNKTRNK---E 119

Query: 121  KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            KR  K++   V KPN   +   A  GK+      T       SKD+ + +    +     
Sbjct: 120  KRNVKKSV--VTKPNNIKSMFIASAGKK------TGDKAIDLSKDDLLGDILQDLTTETP 171

Query: 181  EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCD 240
            +  P      ++RRS+ +++  F    S+ T   + T  T S     + +   + +Q  +
Sbjct: 172  QITPPPVIIPKKRRSIGASLNPF----SLHTPKVVPTGKTASPVSKREPLLTPIPLQRAE 227

Query: 241  VV-------------EESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKL 285
                           +ES  + +E  +  E  + +  N   V  K  D+ +E   E  K 
Sbjct: 228  FAGDPAPAAVCTHDKKESGAIDFEDGDFDEPMEAEEVNVEPVAAKTCDQASEPA-EVVKP 286

Query: 286  NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
             A +     P L       +VS  + +  E  S  + QE + +          D++    
Sbjct: 287  EADLGKGTTPCLGGF--LPDVSCWD-IDQEDDSSFSAQEVQVDSSHLPLVKGADEEQVFQ 343

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E       G ++LFGKV  K+  T+ SCCV+VKN++R +Y +P          
Sbjct: 344  FYWLDAYEDQYN-QPGVVFLFGKVWIKSAETYVSCCVMVKNIERTLYFLPRE-------- 394

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            MK++ +  +   +P+     ++DV      +IA +   +   + IV   ++ YAF   ++
Sbjct: 395  MKIDLNTGKETGTPVT----MKDVYSEFDEKIATKYKIMKFKSKIV---EKNYAFEIPDV 447

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +    
Sbjct: 448  PEKSEY-LEVRYSSEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQ 506

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                P  +SWCK E     P  + V    K V   PP+ V + ++KT+ N +   NE+++
Sbjct: 507  LLNQP--ISWCKVEAMALKPDLVNVI---KDVGP-PPLVVMSFSMKTIQNAKTHENEVIA 560

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             + +  H   +D         +P   SHF VV K    IFP  F++E   +  K      
Sbjct: 561  VAALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYAFSEEIKKKKVKVEI--- 612

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
               ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKR
Sbjct: 613  --AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKR 668

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            S MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R
Sbjct: 669  SNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER 721

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
              +   ++  M+     L+ L+E+   DA   ++++  L+VLPL  Q+TNI+GN+  +TL
Sbjct: 722  VVIPVENIRNMYSEPSHLLYLLEHTWKDARFILQILCELNVLPLALQITNIAGNIMSRTL 781

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G RA+R E+LLLHAF    YIVPDK  + K  +                          
Sbjct: 782  MGGRAERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDED------------------ 823

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
             D   N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R 
Sbjct: 824  IDGDVNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRV 883

Query: 935  PDGL-----------VPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
                           +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   + Q 
Sbjct: 884  ASETQKVTEDEEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQY 943

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGF  SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYG
Sbjct: 944  DIRQKALKLTANSMYGCLGFCYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYG 1002

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+
Sbjct: 1003 DTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVE 1062

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E
Sbjct: 1063 PTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGE 1122

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+ +G V   ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC
Sbjct: 1123 DVLNGSVPASQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC 1181

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                   GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     
Sbjct: 1182 -----QDGSNLSASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVL 1235

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSS 1332
            +A  LGLDP++F+         D  + +L      + DEE+YR CE     CP+C +
Sbjct: 1236 IATWLGLDPTQFR---VHHYHKDEENDVLLGGPAQLSDEEKYRDCERFKCPCPACGT 1289


>gi|336366791|gb|EGN95137.1| hypothetical protein SERLA73DRAFT_77147 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336379492|gb|EGO20647.1| hypothetical protein SERLADRAFT_441989 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1546

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1297 (36%), Positives = 679/1297 (52%), Gaps = 156/1297 (12%)

Query: 300  TAGWKEVSGGNMVLDE----GKSGLNCQESEFEVDD---------DGSLPFYILDAHEQL 346
            T  W  V     V  E    G S  +  +S+F+ DD         DGSL F+ LD  E  
Sbjct: 321  TPSWLSVYDSLAVAQEAEAFGPSITSNSKSQFKSDDSVARTVFEPDGSLRFFWLDCLE-- 378

Query: 347  SGANMGTLYLFGKVKAGSTHHSC-----------CVVVKNMQRCVYAIPNGPLFQTDEI- 394
               + G L+  GKV   S+  S            C+ V+N+QR ++ +P    ++ D I 
Sbjct: 379  ---HGGKLFFIGKVLDKSSSSSANPRGKGQWMSACITVENLQRNLFILPRE--YRVDAIP 433

Query: 395  ---MKLEKDAEESRISPMAFRKKLQDVALGL----------KTEIANQLLNL----NVSN 437
                 L  D  ES+ +    + + ++V  G+          ++++ +    +     V +
Sbjct: 434  VDDEPLSSDDSESKGAATKKKGRPKNVENGMVMHATDVVPSQSDVYDDFDRIRRKCGVKS 493

Query: 438  YIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFL 497
            +    VKR YAF ++++P   ++ +K+ Y F DPPLP++ +  +   + GT++SA ELF+
Sbjct: 494  WKGRWVKRNYAFDESKVPKEGDW-MKVVYGFDDPPLPSNAQSPHIARIFGTNTSAFELFV 552

Query: 498  VKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAI 557
            +KR++ GP WLSI   ++    + +SWCK E +V  PKD  VS    +  + PP+T+ ++
Sbjct: 553  LKRRIMGPCWLSIK--NAVVEGKGISWCKLEASVSDPKD--VSPIFDNTPDAPPLTIMSL 608

Query: 558  NLKTVFNKRQDVNEIVSAS-----------------------VVCCHKAKIDTPMLASEW 594
             ++TV N  ++  EIV  +                       V+  ++  I   +     
Sbjct: 609  AVRTVVNHHENKREIVCVTGRIWKDVTPDEHIRVLTLISRYIVMSTNQYAITVDLDDPTP 668

Query: 595  KKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKL 654
             +    S  T+VR LD   FP  F  +A       G  ++    +ER LLN L+  ++K 
Sbjct: 669  PEQLPCSVHTLVRPLDR--FPPNFEVKARSN----GRGMITPMKNERMLLNSLLTTMFKA 722

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASP 713
            D DVLVGH+  G  LDVL+ R +  +  +  WS++ R +RS+ P + R+G          
Sbjct: 723  DPDVLVGHDFLGVSLDVLIGRMKDLK--ADHWSRLSRFRRSKWPNIGRQGTN-------- 772

Query: 714  GIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--- 767
              +  + GRLLCD  L S   R ++   ++SLT++ KT L  DR+++ P D    F    
Sbjct: 773  --LKFLNGRLLCD--LASDGARSMISSTTWSLTEMCKTHLKSDRQDIDPDDTATYFDGSV 828

Query: 768  -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
             + E L+  + + E DA   M +   + +LPLTRQLTN++GN W KTL G RA+R EY+L
Sbjct: 829  SSPEKLLTFVRHCELDAHYQMAIASKVQILPLTRQLTNLAGNAWNKTLNGGRAERNEYIL 888

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH F   KYI PDK    K     K       +               +           
Sbjct: 889  LHEFHKLKYICPDKTFGKKALPPTKSDDPDDPDGEGGAGGGKGVKGKRD----------- 937

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSK 946
                Y GGLV EPK+GL+DKYIL++DFNSLYPSIIQEYNI FTTVER     +P  P S+
Sbjct: 938  ---KYKGGLVFEPKRGLWDKYILVMDFNSLYPSIIQEYNIDFTTVERDESDDIPEPPPSE 994

Query: 947  TT-GVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
               GVLP L+  LV RRR VK+ MK  + S  K+ Q DI+QQALKLTANSMYGCLGF  S
Sbjct: 995  VAQGVLPRLIATLVSRRRQVKSLMKDKSVSHAKLLQYDIKQQALKLTANSMYGCLGFEYS 1054

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RFYA+PLA L T +GREIL  T +L ++ L L+V+YGDTDS+ ++S + ++++A  I+ +
Sbjct: 1055 RFYARPLAALTTFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTELSEALKISAE 1113

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
              + VN +YK LEIDLDG++ R+LLL+KKKYAA+KV+       EV   KGLDM RR++ 
Sbjct: 1114 FKKAVNDRYKLLEIDLDGIFARLLLLQKKKYAAIKVEDGSRTSTEV---KGLDMKRREYC 1170

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
            +LSK V  + L QILS  + E VVE IH  L  V E++R G+V L+ +++ K L K PE 
Sbjct: 1171 VLSKSVSQYVLDQILSGEATETVVERIHEYLATVGENVRGGKVKLDDFIVYKRLGKNPED 1230

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            YPDAK+QPHVQVA+R+K  G S    +GD +PY+ C   G  S  S   A+RA+HPDE+K
Sbjct: 1231 YPDAKSQPHVQVAMRMKAKGGS--ARSGDVIPYVFCIAAGEESAKSAQ-AERAKHPDEIK 1287

Query: 1244 K-GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSD 1302
            K   G+  ID ++Y + Q+ P + RLC  IEGT   RLA+CLGLDP++F+S  +      
Sbjct: 1288 KAAPGEMNIDYEHYLALQVLPPIERLCEPIEGTDKARLAECLGLDPARFRSSLAGQDVGM 1347

Query: 1303 PSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWR 1362
               +L     D ER+R   P I+ C SC        +     +  S+ P           
Sbjct: 1348 TFGTLDSRTSDSERFRDAIPFIVRCRSCKGQIVFAPINDGSTLLRSDGPI---------- 1397

Query: 1363 TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN---- 1418
               CP C    +A   +  +IA Q++ Q    +S YY+   +CDD TC   T  +     
Sbjct: 1398 ---CPAC----KAIFGTASLIA-QLEVQIRKCISRYYEFWTVCDDPTCGARTRGMGVYGR 1449

Query: 1419 --LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
              LR +  +E G       RC G +  +Y +ADLY Q+ YF  L D +R +       K+
Sbjct: 1450 RCLRRVEASETGGSGGVEERCKGNVRIEYGDADLYDQMRYFASLFDAERAVRGALDREKM 1509

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                  N I   +     TV++  ++C   WV L  +
Sbjct: 1510 ITLTSHNVI--FLQTMMETVEKYTDQCGRRWVDLKSL 1544


>gi|32329601|gb|AAP45778.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1514

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1251 (35%), Positives = 679/1251 (54%), Gaps = 142/1251 (11%)

Query: 315  EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            E KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + 
Sbjct: 344  EQKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIYQPEINQYVSCSMK 400

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V  MQR +YA+P           K++K      ++     + ++ V L L+ +I  +   
Sbjct: 401  VNGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ 448

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
              ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S 
Sbjct: 449  -GITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSM 506

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVA 547
            LELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  
Sbjct: 507  LELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKT 560

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
            ++PP+T      KT    + + NEI   S +  +    + P    +++       FT+VR
Sbjct: 561  DIPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVR 613

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
            KLDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G 
Sbjct: 614  KLDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGG 668

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLL 724
              D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  G LL
Sbjct: 669  IFDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GXLL 724

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAW 784
             DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++
Sbjct: 725  VDTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSY 784

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
             +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     
Sbjct: 785  YTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD----- 839

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGL 903
            K+   AK      + D   E          NDT         ++   YAGGLV+EPK G 
Sbjct: 840  KKPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGF 889

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGL 938
            YD  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  
Sbjct: 890  YDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVD 949

Query: 939  VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
            +P    +    VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGC
Sbjct: 950  LPDKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEKDQVKLQQLEIRQKAIKLTANSMYGC 1009

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LGFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++
Sbjct: 1010 LGFSSSRFHASAIAALITKTGRETLLRTKDIAENXLGFNVVYGDTDSIMINTGTNQLQQS 1069

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLD 1116
              +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA++ +       +VI E KGLD
Sbjct: 1070 LEMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLD 1129

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRRDW  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK 
Sbjct: 1130 MVRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQ 1189

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LT+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A
Sbjct: 1190 LTRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKA 1249

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----Q 1292
             HPDEL    GK  +DID+Y + QI P ++RL   I+G + E +A CLG+DP K+    +
Sbjct: 1250 YHPDELLSSKGKITLDIDWYITTQILPPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSE 1309

Query: 1293 SKPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVS 1348
             K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS
Sbjct: 1310 KKNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS 1368

Query: 1349 EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDE 1408
                           L C KC       +I    + N+V       +++YY+G   C + 
Sbjct: 1369 --------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEP 1409

Query: 1409 TCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI- 1467
            +CK  T  L             C N   C G++V +Y+E      L Y   L + ++ + 
Sbjct: 1410 SCKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNDTLRYLQGLFNIKKHLH 1460

Query: 1468 -----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                 + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1461 ENSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYNKVDLGSI 1504


>gi|389745369|gb|EIM86550.1| DNA polymerase alpha catalytic subunit [Stereum hirsutum FP-91666
            SS1]
          Length = 1452

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1224 (37%), Positives = 658/1224 (53%), Gaps = 152/1224 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIP-- 384
            ++ DGS  F+ LD  E     + G LY  GK    +T    SCCV V N+QR ++ +P  
Sbjct: 336  LEPDGSFRFFWLDYLE-----HEGVLYFIGKTLDKTTKAWVSCCVAVNNLQRNLFVLPRE 390

Query: 385  ---NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
               +G  ++TD +  + KD           RKK      G+KT             +   
Sbjct: 391  KRQDGEGYETDVVPGM-KDVYSDFDQ---VRKKA-----GIKT-------------WKAK 428

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
             VKR+YAFG A++P  E   LK+ Y F +P +P D+   NF  + G+++SA EL ++KR+
Sbjct: 429  FVKRKYAFGVADVPKEETSWLKVVYGFDEPQIPTDVTSPNFSRVFGSNTSAFELLVIKRR 488

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR-VSSSSKHVA-EVPPVTVTAINL 559
            + GP W+ + K       Q  SWCK E+ V  PKD    S +  H   E+PP+TV ++++
Sbjct: 489  IMGPCWIKVQK--PHVEHQGASWCKMEVIVSDPKDFNPFSETDAHAPKEMPPLTVASLSV 546

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMG 617
            +T+ N  +++ EIV      C  A+I +     +   P  L  S  T+VR L+   FP  
Sbjct: 547  RTIVNHAENIREIV------CVTARIWSNFQIEDGTPPEQLPCSVHTLVRPLER--FPPN 598

Query: 618  FNKEATDRNSKAGSNVLCCESSERALLNRLM--IELYKLDSDVLVGHNISGFDLDVLLHR 675
            F            S VL    +ER LL+ L+  I L+K D DV+VGH   G  LDVLLHR
Sbjct: 599  FENVVRSNGKGTISAVL----NERMLLSSLLRKITLHKADPDVVVGHEFLGVSLDVLLHR 654

Query: 676  AQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRD 733
             +  +V    WS++GR +R + P + R+G  I            + GRLLCD     ++ 
Sbjct: 655  MRELKV--DHWSRLGRFRRVKWPNIGRQGTNI----------RFLQGRLLCDLGSDAAKS 702

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF----QTLESLMELIEYGETDAWLSMEL 789
            ++   +++LT++ KT L  DR+++   +  + F    +  E L+  + + E DA L M L
Sbjct: 703  MISSTTWALTEMCKTHLKVDRQDIDADETHEYFDFAVKGPEKLVRFVRHCELDAHLQMAL 762

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
               + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK       + 
Sbjct: 763  ACKVQMLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDK-------QW 815

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
             ++ +   VE              D D      +   +   Y GGLV EPK+GL+DKYIL
Sbjct: 816  GRKAAQIKVE-------------VDEDGEETGKKSKNKKDKYKGGLVFEPKRGLWDKYIL 862

Query: 910  LLDFNSLYPSIIQEYNICFTTVER--SPDGLVPHLPSSKT----TGVLPELLKNLVQRRR 963
            ++DFNSLYPSIIQEYNI FTT++R  + DG    +P         GVLP L+  LV RRR
Sbjct: 863  VMDFNSLYPSIIQEYNIDFTTIDRPEAEDGEEEKIPEPPEDDVPQGVLPRLIATLVNRRR 922

Query: 964  MVKTWMKTAS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK+ MK  S    K+ Q DI+QQALKLTANSMYGCLGF  SRF+A+PLA L T +GREI
Sbjct: 923  QVKSLMKDRSLPHAKLLQFDIKQQALKLTANSMYGCLGFEGSRFFARPLAALTTFKGREI 982

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            L +T +L ++ L L+VIYGDTDS+ ++S + +++ A  I+ +  + VN++YK LEIDLDG
Sbjct: 983  LTNTRELAES-LQLDVIYGDTDSLFVNSNVTELSDALKISAEFKKAVNERYKLLEIDLDG 1041

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +++R+LLL+KKKYAA+KV+  DG      E KGLDM RR++  LSK V  + L QILS  
Sbjct: 1042 VFQRLLLLQKKKYAAIKVE--DGT-RTTTEVKGLDMKRREYCALSKSVSQYVLDQILSGE 1098

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E VVE+IH  L  +   +R+ QV +E+++I K L K P+ YPDAK+QPHVQVA R+K+
Sbjct: 1099 PTEVVVENIHEYLTTLSTSIRTNQVKVEEFIIFKRLGKNPKDYPDAKSQPHVQVAFRMKE 1158

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSS--VGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
                    AGD +PYI C E   + GS    G A+RARHP+E+KK   +  ID +YY + 
Sbjct: 1159 R-LGVDSRAGDVIPYIFCLEGKATEGSGGKTGQAERARHPEEIKKAAEELKIDYEYYLAN 1217

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRG 1319
            QI P V RLC  IEGT   RLA+CLGLDP +++             +L   V D ERY+ 
Sbjct: 1218 QILPPVERLCDPIEGTDRARLAECLGLDPGRYRHNVVGEAEERYFGTLDSQVPDSERYKD 1277

Query: 1320 CEPLILSCPSCSSTFDCPAVC---SSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
             EP I+ C  C +      +    SSI +     PS P           CP C +     
Sbjct: 1278 AEPFIVRCRHCEAHTAFSPIGDRDSSIVL-----PSGPT----------CPACKKP---- 1318

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR 1436
              S   +  Q++ +    ++ YY+   +CDD TC   T  +       A  G  C   P 
Sbjct: 1319 -FSTASLQVQLEAEIRKSIARYYEAWTVCDDPTCGNRTRQM-------AVYGRRCLK-PG 1369

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTV 1496
            C G++  ++++A++Y QL Y  +L D ++       +AK    K  + I  +  L A  +
Sbjct: 1370 CRGKVAFEFSDAEMYNQLRYLAYLFDVEK-------AAKAATGKRHDDIVTLGTLQADFL 1422

Query: 1497 QRIRE-------RCAYGWVKLNDI 1513
            QR+ +       R    WV +  +
Sbjct: 1423 QRMSQAVEKYLDRSGRRWVDMGSL 1446



 Score = 40.8 bits (94), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 12  RRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRRE 71
           RR R  + +  AE     K  R GG R+     +  + E  +YD V ED+Y ++V  R +
Sbjct: 6   RRDRKDKLAKLAE----YKKAREGGGRT-----WKDEEEADLYDVVTEDQYKSIVKGRLQ 56

Query: 72  EARGFIVDDDGL-GYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK 116
             +   V+DDG+ GY D G  +DW+  G   S D+E    +R+ KK
Sbjct: 57  --KDDFVEDDGVDGYMDNGM-DDWTGGG--DSQDEEEEHDRRASKK 97


>gi|326679675|ref|XP_001922054.2| PREDICTED: DNA polymerase alpha catalytic subunit [Danio rerio]
          Length = 1439

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1234 (37%), Positives = 669/1234 (54%), Gaps = 133/1234 (10%)

Query: 268  KEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAG---WKEVSGGNMVLDEGKSGLNCQE 324
            +E VK++   + K   K+  K   +   L+S   G   W+++  G  +  E    +    
Sbjct: 255  EEPVKEKAEPETKPIVKVEPKTEPQDKMLISGLVGGMGWEKMEEGKPI--ETPVEVQVDS 312

Query: 325  SEFEV----DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQR 378
            S+  +    D D    FY LDA E       G ++LFGKV  ++   H SCCV VKN++R
Sbjct: 313  SQLPLVEGPDGDMVFRFYWLDAFEDQYN-QPGVVFLFGKVWIESAEAHVSCCVAVKNIER 371

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
             +Y +P       +  + L    +   +  M   K+  +++   K           +  +
Sbjct: 372  TMYLLPR------EHKVNLATGEKGVAVGMMDVYKEFNEISEKFK-----------IMKF 414

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
               PV + YAF   +IP+   Y L++ Y  + P LP+DLKG  F  + GT++S+LE FL+
Sbjct: 415  KSKPVTKNYAFEIPDIPSQSEY-LEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFLL 473

Query: 499  KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
             RK++GP WL ++  +   + Q +SWCK E        I V          PP+ V +I+
Sbjct: 474  NRKIRGPCWLDVT--TPQLSNQPISWCKVEAVAQKSDLISVVKD----LSPPPLVVMSIS 527

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
            LKTV N +   NEIVS + +  H   +D         +P   +HF           P+  
Sbjct: 528  LKTVQNPKTHQNEIVSIAALVHHTFPLDKAP-----PRPPFQTHFCESDT------PIKN 576

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            N +     S      L     ERALL   + +++K+D DVLVGH+I GFDL+VLL R  V
Sbjct: 577  NFQIASAGSSLKIRTLF---YERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINV 633

Query: 679  CRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            C+VP   WSKIGRL+R+ MPKL  GR+ F         S   GRL+CD  + +++L+R  
Sbjct: 634  CKVPH--WSKIGRLRRANMPKL-GGRSGFAEK------SATCGRLVCDIEISAKELIRCK 684

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            SY+LT+L    L  +R  V P ++   +     L+ L+E    DA L +++M  L+VLPL
Sbjct: 685  SYNLTELVSQILKAERPVVPPENIRNFYSDSTHLLYLLELTWMDAKLILQIMCELNVLPL 744

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
              Q+TNI+GN+  +TL G R++R EYLLLHAF  + +IVPDK  +               
Sbjct: 745  ALQITNIAGNVMSRTLMGGRSERNEYLLLHAFHERDFIVPDKQFF--------------- 789

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
              +  ++   ED   + D+      K ++  AYAGGLVL+PK G YDK+ILLLDFNSLYP
Sbjct: 790  --KKAQQDLGEDE--EGDSGKGKSNKTRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYP 845

Query: 919  SIIQEYNICFTTVERSPDGL----------VPHLP-SSKTTGVLPELLKNLVQRRRMVKT 967
            SIIQE+NICFTTVER               +P LP  S   G+LP+ ++ LV+RRR VK 
Sbjct: 846  SIIQEFNICFTTVERGATNTRKKTEEDEDEIPELPDQSLEMGILPKEIRKLVERRRQVKQ 905

Query: 968  WMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
             MK       L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  
Sbjct: 906  LMKEPDLNPDLYL-QYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILMH 964

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T ++VQ  +NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K
Sbjct: 965  TKEMVQ-RMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFK 1023

Query: 1085 RMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
             +LLLKKKKYAA+ V+ + DG      E KGLD+VRRDW  L+KE G++ + QILS+++ 
Sbjct: 1024 SLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQNR 1083

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            + ++E+I   L+++ E + +G + L  + I K+LTK P+ YPD K+ PHV VAL +   G
Sbjct: 1084 DTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQDYPDKKSLPHVHVALWINSQG 1143

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
                  AGDTV Y+IC       GS++  +QRA   ++L+K  G   +D  YY SQQ+HP
Sbjct: 1144 -GKKVKAGDTVSYVIC-----QDGSNLAASQRAYTLEQLQKQPG-LNLDTQYYLSQQVHP 1196

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGC 1320
            VV R+C  IEG     +A  LGLDPS F+++  +    D +   L A   + DEERYR C
Sbjct: 1197 VVGRICEPIEGIDAVLIATWLGLDPSHFRAQ--QQQREDEADDFLGAPAQLTDEERYRDC 1254

Query: 1321 EPLILSCPSCSS--TFD--CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
            E    +CP C +   +D       S++ +S+      P           C   P + +  
Sbjct: 1255 ERFTFTCPDCGTENIYDNVFEGTGSTLQLSLKSCCHVP-----------CGGSPMDHQV- 1302

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR 1436
                  I N+++      +  YY G ++C+D+ C+     L    I  +  G +CP   R
Sbjct: 1303 -----QIGNKLQLDIRRHIRRYYSGWLLCEDQACRNRIRRLP---IAFSRSGPICPACLR 1354

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
                L  +Y+E  LY QL+++ ++ D +  I K+
Sbjct: 1355 ST--LKPEYSEKALYNQLSFYRYIFDWEYAINKV 1386


>gi|393221988|gb|EJD07472.1| hypothetical protein FOMMEDRAFT_137775 [Fomitiporia mediterranea
            MF3/22]
          Length = 1441

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1209 (38%), Positives = 662/1209 (54%), Gaps = 126/1209 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNG 386
            ++DDGSL F+ +D  EQ      G ++  GK+K   T    SCC+ V+N++R        
Sbjct: 329  LEDDGSLRFFWIDYLEQ-----DGNVHFIGKLKDKKTKLWVSCCLTVENLERN------- 376

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
             LF      KLE D  E+ I P        DVA           +N   S +    VKR+
Sbjct: 377  -LFVLSRPKKLE-DGHETDIVPDNL-----DVAKDFDALRKKAGINKFKSKF----VKRK 425

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAFG+ ++P  E+  +K+ YPF +P L  +L+ +    + GT +SA EL ++KRK+ GP 
Sbjct: 426  YAFGEPDVPLNEHSWMKVKYPFSEPQLSENLQTDTIARIFGTRTSAFELLVLKRKIMGPC 485

Query: 507  WLSISKFSSCPAPQR--VSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTV 562
            WL I +    P  +   +SWCK+E TV +PKDI     +   A  E PP+TV ++ ++TV
Sbjct: 486  WLQIKE----PHVEHKGISWCKFEATVSNPKDINPFPETDADAPKETPPLTVMSLTVRTV 541

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS--HFTVVRKLDGGIFPMGFNK 620
             N +++  E+V A+        ++ P        P  LS    T+VR L    FP  F +
Sbjct: 542  VNYKENKREVVCATARTWSDLDLEDPT------PPDQLSCTVHTLVRPLVK--FPARF-Q 592

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
            +A   N K     +  E++ERALLN L++ +++ D DV+VGH   G  LDVLL R +  +
Sbjct: 593  DAVKSNKKG---TILAEANERALLNNLLLTIFRTDPDVIVGHEFLGVSLDVLLDRMRDQK 649

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLRE 737
            +    WS+IGR +R+  P + K  T          +  + GRLLCD  L S   + ++  
Sbjct: 650  LKD--WSRIGRFRRTRWPNIGKQGTN---------IKFLNGRLLCD--LASDGAKGMISS 696

Query: 738  VSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDAWLSMELMFHL 793
             ++S+T++  T L  +R+++ P +V   F     T + L+  +++ E DA   M +   +
Sbjct: 697  TTWSMTEMCATHLKCEREDIDPDEVADYFDGNLSTPDKLIRFVQHCELDAHYQMAIAARV 756

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+QLTN++GN W KTL G RA+R EY+LLH F   KYI PDK T+ K+   A   
Sbjct: 757  QILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDK-TFGKKVAAAAAV 815

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                  D  V  +T               +K KR   Y GGLV EPK+GL+DKYIL++DF
Sbjct: 816  KAEAEGD-GVVPVT---------------QKSKRD-KYKGGLVFEPKRGLWDKYILVMDF 858

Query: 914  NSLYPSIIQEYNICFTTVER--SPDG---LVPHLPSSKT-TGVLPELLKNLVQRRRMVKT 967
            NSLYPSIIQEYNI FTTVER  S +G    +P  PSS    GVLP L+  LV RRR VK 
Sbjct: 859  NSLYPSIIQEYNIDFTTVERADSEEGEEEKIPDPPSSDVPQGVLPRLIATLVARRREVKK 918

Query: 968  WMKTASG--LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             MK  S    K+ Q DI+QQALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  T
Sbjct: 919  LMKDRSTPHAKMLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTYKGREILART 978

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
             +L +N   L+VIYGDTDSI ++S + ++ +A  I+    + VN++Y  LEIDLDG+++R
Sbjct: 979  RELAENQ-GLDVIYGDTDSIFVNSNVTELPQALRISDTFKKLVNEQYVKLEIDLDGIFQR 1037

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            +LLL+KKKYAA+KV+  +    EV   KGLDM RR++  LSK+     L  +LS  + E 
Sbjct: 1038 LLLLQKKKYAALKVEDAERTSVEV---KGLDMKRREYCQLSKDTSHHILEMVLSGEATET 1094

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            VVE IH  L K+ E++R  ++ L+K++I K L K PE YPDAK+QPHV VALRLK  G  
Sbjct: 1095 VVEQIHEHLSKLGEEVRGDKINLDKFIINKRLGKNPEDYPDAKSQPHVTVALRLKSKGQQ 1154

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                AGD +PYI C  +G  S  S   A RA HPDEL++ +G+  ID ++Y SQQI P +
Sbjct: 1155 P--RAGDVIPYIFCLNEGAESMKSAQ-ADRAHHPDELRRANGELKIDYEFYLSQQILPPI 1211

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
             RLC  IEGT   RLA+CLGLDP +F+S  +         +L   + D  R++ C+PL +
Sbjct: 1212 ERLCEPIEGTDRARLAECLGLDPGRFRSHYNGDSDDRAFGTLESQMPDNVRFKDCDPLTI 1271

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C  C    + P    S   +   + S P           C  C   ++   +    + N
Sbjct: 1272 RCRKCEG--EMPFTHISERGTSIIQTSGPT----------CKGCQAPLKTTSMQ-MQLEN 1318

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKY 1445
            Q++      ++ YY+G  +CDD  C+  T  +++        G  C     C G +  +Y
Sbjct: 1319 QIREH----INRYYEGWTVCDDPMCRNRTRMMSV-------YGRRCLKR-ECKGTVAFEY 1366

Query: 1446 TEADLYKQLTYFCHLLDTQRGIEKMEISA-KIPLEKELNKIRPVVALAASTVQRIRERCA 1504
            ++  LY QL ++  L+  ++ ++    S  K  ++  +   R ++      V +   +C 
Sbjct: 1367 SDNQLYTQLMFYSSLVCPEKVLKSAIASPQKSTIDAAVQNNRKLLDDMNEIVDKYLSQCG 1426

Query: 1505 YGWVKLNDI 1513
              WV+L ++
Sbjct: 1427 RRWVELGNL 1435


>gi|410908891|ref|XP_003967924.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Takifugu
            rubripes]
          Length = 1467

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1210 (38%), Positives = 667/1210 (55%), Gaps = 140/1210 (11%)

Query: 328  EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN 385
            E D +    FY LDA E+   ++ G +YLFGKV  ++  +H SCCV V+N++R +Y +P 
Sbjct: 347  EPDGEQVFRFYWLDAFEE-PYSHPGVVYLFGKVWIESAKSHVSCCVTVRNIERTMYLLPR 405

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLK---TEIANQLLNLNVSNYIVSP 442
                             E R++P     ++ D  +G+     E         +  Y    
Sbjct: 406  -----------------EYRVNPKT--GEVSDTPVGMMDVYQEFNELSEKFKIMKYKSKK 446

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
            V++ YAF   ++ +   Y L++ Y  + P LP+DLK   F  + GT++S LE  L+ RK+
Sbjct: 447  VEKNYAFEIPDVSSHGEY-LEVRYSAEFPALPSDLKASTFSHIFGTNTSFLEHLLLSRKI 505

Query: 503  KGPSWLSISKFSSCPAPQR----VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
            KGP WL ++       PQR    VSWCK E     P  I V          PP+TV +I+
Sbjct: 506  KGPCWLDVT------TPQRMSQPVSWCKVEALALKPDLISVIKD----LVPPPLTVMSIS 555

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
            LKTV N +   NEIVS + +  H+ ++D         +P   SHF V+ K    IFP  F
Sbjct: 556  LKTVQNPKTLHNEIVSLAALIHHQFQMDKAA-----PEPPYQSHFCVISKPSDCIFPYDF 610

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
             +    +N K          +ER LL   + +++K+D DVLVGH+I GFDL+V+L R  V
Sbjct: 611  KEAVRKKNGKVE-----IAQTERTLLGFFLAKMHKIDPDVLVGHDIFGFDLEVILQRISV 665

Query: 679  CRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            C+VP   WSKIGRL+R+ MPKL  GR+ F         S   GRL+CD  + +++L+R  
Sbjct: 666  CKVPH--WSKIGRLRRANMPKL-GGRSAFAEK------SATCGRLVCDVEISAKELIRCK 716

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            SY LT+L    L  +R  V   ++  ++     L+ L+E   TDA L +++M  L+VLPL
Sbjct: 717  SYHLTELTAHILKVERVTVPQENIRNLYSNSPHLLRLLELTWTDAKLILQMMCELNVLPL 776

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK-ETKMAKQRSNHG 857
              Q+TNI+GN+  +TL G R++R E+LLLHAF  K YIVPDK ++ K + +MA+      
Sbjct: 777  ALQITNIAGNVMSRTLMGGRSERNEFLLLHAFHEKNYIVPDKPSFKKTQLEMAE------ 830

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                              D       K K+  AYAGGLVL+PK G YDK++LLLDFNSLY
Sbjct: 831  ----------------GEDEGAVGKGKRKKKAAYAGGLVLDPKVGFYDKFVLLLDFNSLY 874

Query: 918  PSIIQEYNICFTTVERSPDGL--------------VPHLPSSKTTGVLPELLKNLVQRRR 963
            PSIIQE+NICFTTV+R    L              +P   SS   G+LP+ ++ LV+RR+
Sbjct: 875  PSIIQEFNICFTTVQREALNLQRKNEEEDQEEIPEIPD--SSLEMGILPKEIRKLVERRK 932

Query: 964  MVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  MK    +     Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREI
Sbjct: 933  QVKQLMKQQDINPDAYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREI 992

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            L  T ++VQ  +NL+VIYGDTDSIMI++    + +   +  KV  EVNK YK LEID+DG
Sbjct: 993  LMHTKEMVQ-KMNLDVIYGDTDSIMINTNSKSLEEVFKLGNKVKAEVNKLYKLLEIDIDG 1051

Query: 1082 LYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            ++K +LLLKKKKYAA+ V+   DG      E KGLD+VRRDW  L+KE G++ + QILS+
Sbjct: 1052 VFKSLLLLKKKKYAALVVENHGDGRYTLKQELKGLDIVRRDWCDLAKECGNYVIGQILSD 1111

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +S + +VE+I   L+++ E + +G + L +Y I K L K P+ YPD K+ PHV VAL + 
Sbjct: 1112 QSRDVIVENIQKHLVEMGEKVAAGDIPLNQYEIHKALAKDPQDYPDKKSLPHVHVALWIN 1171

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
              G      AGDTV YIIC       GS++  +QRA   ++L+K +G   +D  YY +QQ
Sbjct: 1172 SQG-GRRVKAGDTVSYIIC-----KDGSTLAASQRAYTQEQLQKQEG-LSLDTQYYLAQQ 1224

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL---FAVGDEERY 1317
            +HPVVSR+C  IEG     +A  LGLDPS+F+++  +    +  + LL     + DEERY
Sbjct: 1225 VHPVVSRICDPIEGIDGVLIATWLGLDPSQFRAQ--QQYQREDENHLLGVSLQLTDEERY 1282

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
            + CE    +CP C +   C +V     +++  +PS           +RC   P E     
Sbjct: 1283 KDCENFTFTCPQCGTDNICDSVFEGTGLNL--EPS----------LMRCCHIPCESRPID 1330

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC 1437
             S   I N++       +  YY G ++C+D+ C+  T  L    I  + +G +CP   R 
Sbjct: 1331 YSVN-ICNKLLLDIRRHIKKYYAGWLVCEDQACQNRTRRLP---IAFSRQGPICPACSRA 1386

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPL-----EKELN---KIRPVV 1489
              R   +Y+E  LY QL ++  + D +    K++   K  +     EKE+    K  P  
Sbjct: 1387 TLR--PEYSEKALYNQLCFYRFIFDWEAAFSKIQADEKSHVKNCNKEKEVYRRLKEVPDK 1444

Query: 1490 ALAASTVQRI 1499
            ALAAS+   I
Sbjct: 1445 ALAASSYSDI 1454



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 10  GRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARR 69
            R R      S R  AL++LK       + G+ + Y ++    +Y+ V E++Y  LV  R
Sbjct: 28  SRSRREKRAKSGRMSALDQLKK-----AKKGEKIKYKVEELTSVYEEVDEEQYSKLVRDR 82

Query: 70  REEARGFIVDDDGLGYGDEGQE 91
           +E+   +IVDDDG+GY ++G+E
Sbjct: 83  QED--DWIVDDDGIGYVEDGRE 102


>gi|134112730|ref|XP_774908.1| hypothetical protein CNBF0730 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257556|gb|EAL20261.1| hypothetical protein CNBF0730 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1494

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1198 (37%), Positives = 647/1198 (54%), Gaps = 125/1198 (10%)

Query: 313  LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCC 370
            LD   + +   + E  ++ DGSL F+ LD  EQ      G ++L GKV  K    + S C
Sbjct: 361  LDTVSAPVGSTKPENVMEKDGSLRFFWLDHLEQ-----DGIVHLVGKVLDKQTGKYVSAC 415

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            V V  ++RC+Y  P    F        E D + S           +DV      E  N  
Sbjct: 416  VSVTGIERCLYVKPRAKRFARG----FETDLDVSE----------EDVL----DEFENFR 457

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
              + +  Y    VKR+YAF   ++  GE+  L++ Y F  P +P D  G  F  + GT++
Sbjct: 458  SQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQPAIPMDSNGATFSHIFGTNT 517

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--E 548
            +  ELF+V +K+ GPSWL I   +  P  +  SWCK E  V  P ++   S +   A  +
Sbjct: 518  TPFELFVVNQKIMGPSWLEIKDIA--PVEKASSWCKLEFYVTDPSEVNPFSETDPSAPKD 575

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             PP T+ +I+L+T+ N R++  EI+S S+       I+ P    + +    L+  T+VR 
Sbjct: 576  TPPFTIMSISLRTIVNHRENKTEILSVSMRTWDNYNIEDPTPPDQLR--SQLN--TIVRP 631

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            ++   FP G   +A    S+          +ERALLN ++  +Y+ D DV+VGHN  G  
Sbjct: 632  IER--FPSGLESKARSEKSQ-----FQTVKTERALLNSMLGMIYRHDPDVIVGHNFLGGG 684

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-T 727
             + LL+R +   + +  WS+IGR +R       KG  +   G++  +M   AGRL+ D +
Sbjct: 685  FEALLYRMK--ELKADHWSRIGRFRR-------KGMNVSKMGSNVKLM---AGRLVADLS 732

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDA 783
               ++ ++   ++SLT++  T L   R+++ P D    F     + + L++ I   E DA
Sbjct: 733  SDAAKGMISSTTWSLTEMTNTHLKVQREDIDPEDTAGYFDHTATSPDRLIKFIRLCEVDA 792

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +  M +   + +LPLT+QLTN++GN W  TL G RA R E++LLH F   +Y+ PDK  Y
Sbjct: 793  FFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHRLEYVCPDKAPY 852

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKG 902
              +T+        G +D   E++                 KG+RG A YAGGLV EPK+G
Sbjct: 853  KAKTRPT------GDDDEVTEDII--------------AMKGQRGKAKYAGGLVFEPKRG 892

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKT-TGVLPELLK 956
            L+DKYI+++DFNSLYPSIIQEYNI FTTVER  D       +P +PSS    GVLP ++ 
Sbjct: 893  LWDKYIIIMDFNSLYPSIIQEYNIDFTTVERDDDENAEEEKIPDVPSSDVPQGVLPRIIA 952

Query: 957  NLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
             LV RRR VK  MK  +A+  K+ Q DI+QQALKLTANSMYGCLGF+ SRF ++PLA L 
Sbjct: 953  TLVNRRRQVKALMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALT 1012

Query: 1015 TQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
            T +GREIL  T +L ++ L L+V+YGDTDS+ ++S +    +A  IA +  + VN++YK 
Sbjct: 1013 TFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKKLVNERYKL 1071

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            LEIDLD +++R+LLL KKKYAAVK+   D       E KGLDM RR++S +SK+     L
Sbjct: 1072 LEIDLDAVFERILLLNKKKYAAVKI---DEAGERSTEVKGLDMKRREFSKVSKDASAAIL 1128

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +ILS  + E VVE IH  L K+ E +R+ ++ ++ Y+I K L K PE YPD K+QPHVQ
Sbjct: 1129 KEILSGEATEVVVEKIHELLTKLGEAVRNNEIPIDDYIIFKRLGKNPEDYPDKKSQPHVQ 1188

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            VALR+KQ G      A D +PYIIC ++    G +   A RA HPD+L++   +  ID +
Sbjct: 1189 VALRMKQKG--AAVRAHDVIPYIICLDEHGKGGKTAS-ADRAFHPDDLRRQGSELRIDHE 1245

Query: 1255 YYASQQI-HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD 1313
            YY  QQI HP++ RLC +IEGT   RLA+CLGLDP ++ S  +         +    + D
Sbjct: 1246 YYLDQQILHPIL-RLCETIEGTERARLAECLGLDPLRYTSTGTAEAQEKEFFTFDSQISD 1304

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEV 1373
             +R+R  +PL L CPSCS             + V  +    E        + C  C    
Sbjct: 1305 NDRFRDADPLNLVCPSCSEE----------TVFVGLQTDASEVSNIRANGICCNSC---- 1350

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
                I P  +  Q++ Q    +S YY G M CD E C   T ++++        G  C  
Sbjct: 1351 -QLVIHPASLQLQLENQIRSHISKYYLGWMTCDGEGCGLRTRAMSV-------YGKRCLG 1402

Query: 1434 YPR--CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVV 1489
            + +  C G +  +YT+A LY QL Y+  L D ++ +  +  S +       ++IRP+ 
Sbjct: 1403 FIKENCWGTMRLEYTDAKLYNQLLYYRSLFDVEKILNAVRGSQR------FDEIRPLT 1454


>gi|405121124|gb|AFR95893.1| DNA polymerase alpha catalytic subunit [Cryptococcus neoformans var.
            grubii H99]
          Length = 1456

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1224 (36%), Positives = 655/1224 (53%), Gaps = 149/1224 (12%)

Query: 313  LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCC 370
            LD   + +   + E  ++ DGSL F+ LD  EQ      G ++L GKV  K    + S C
Sbjct: 315  LDTVSAPVGSTKPEKVMEKDGSLRFFWLDHLEQ-----DGIVHLVGKVLDKQTGKYVSAC 369

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            V V  ++RC+Y  P    F        E D + S           +DV      E  N  
Sbjct: 370  VSVTGIERCLYVKPRAKRFAR----GFETDLDVSE----------EDVL----DEFENFR 411

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
              + +  Y    VKR+YAF   ++  GE+  L++ Y F  P +P D  G  F  + GT++
Sbjct: 412  SQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQPAIPMDSSGATFSHIFGTNT 471

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--E 548
            +  ELF+V +K+ GPSWL I   +  P  +  SWCK E  V  P ++   S +   A  +
Sbjct: 472  TPFELFVVNQKIMGPSWLEIKDIA--PVEKASSWCKLEFYVTDPSEVNPFSETDPSAPKD 529

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             PP T+ +++L+T+ N R++  EI+S S+       I+ P    + +    L+  T+VR 
Sbjct: 530  TPPFTIMSVSLRTIVNHRENKTEILSVSMRTWDNYNIEDPTPPDQLR--SQLN--TIVRP 585

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            ++   FP G   +A    S+          +ERALLN ++  +Y+ D DV+VGHN  G  
Sbjct: 586  IER--FPNGLESKARSEKSQ-----FQTVKTERALLNSMLGMIYRHDPDVIVGHNFLGGG 638

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-T 727
             + LL+R +  +  +  WS+IGR +R       KG  +   G++  +M   AGRL+ D +
Sbjct: 639  FEALLYRMKELK--ADHWSRIGRFRR-------KGMNVSKMGSNVKLM---AGRLVADLS 686

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDA 783
               ++ ++   ++SLT++  T L   R++V P D    F     + + L++ I   E DA
Sbjct: 687  SDAAKGMISSTTWSLTEMTNTHLKIQREDVDPEDTAGYFDHTATSPDRLIKFIRLCEVDA 746

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +  M +   + +LPLT+QLTN++GN W  TL G RA R E++LLH F   +Y+ PDK  Y
Sbjct: 747  FFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHRLEYVCPDKAPY 806

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKG 902
              +T+        G +D   E++                 KG+RG A YAGGLV EPK+G
Sbjct: 807  KVKTRPT------GDDDEVTEDIIA--------------MKGQRGKAKYAGGLVFEPKRG 846

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKT-TGVLPELLK 956
            L+DKYI+++DFNSLYPSIIQEYNI FTTV+R  D       +P +PSS    GVLP ++ 
Sbjct: 847  LWDKYIIIMDFNSLYPSIIQEYNIDFTTVDRDEDENPEEEKIPDVPSSDVPQGVLPRIIA 906

Query: 957  NLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
             LV RRR VKT MK  +A+  K+ Q DI+QQALKLTANSMYGCLGF+ SRF ++PLA L 
Sbjct: 907  TLVNRRRQVKTLMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALT 966

Query: 1015 TQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
            T +GREIL  T +L ++ L L+V+YGDTDS+ ++S +    +A  IA +  + VN++YK 
Sbjct: 967  TFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKRLVNERYKL 1025

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            LEIDLD +++R+LLL KKKYAAVK+   D       E KGLDM RR++S +SK+     L
Sbjct: 1026 LEIDLDAVFERILLLNKKKYAAVKI---DEAGERSTEVKGLDMKRREFSKVSKDASAAVL 1082

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +ILS  + E VVE IH  L K+ E +R+ ++ ++ Y+I K L K PE YPD K+QPHVQ
Sbjct: 1083 KEILSGEATEVVVEKIHELLTKLGEAVRNSEIPIDDYIIFKRLGKNPEDYPDKKSQPHVQ 1142

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            VALR+KQ G +    A D +PYIIC ++    G +   A RA HPD+L++   +  ID +
Sbjct: 1143 VALRMKQKGAT--VRAHDVIPYIICLDEHGKGGKTAS-ADRAFHPDDLRRQGSELKIDHE 1199

Query: 1255 YYASQQI-HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD 1313
            YY  QQI HP++ RLC +IEGT   RLA+CLGLDP ++ S  +         +    + D
Sbjct: 1200 YYLDQQILHPIL-RLCETIEGTERARLAECLGLDPLRYTSAGTAEAQEKEFFTFDSQISD 1258

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEV 1373
             +R+R  +PL L CPSC                      K ET +     +  P    EV
Sbjct: 1259 NDRFRDADPLNLICPSC----------------------KEETVF-----VGLPSDASEV 1291

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
                I P  +  Q++ Q    +S YY G M CD E C   T ++++        G  C  
Sbjct: 1292 SV--IHPASLQLQLENQIRSHISKYYLGWMTCDGEGCGLRTRAMSV-------YGKRCLG 1342

Query: 1434 YPR--CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI--------------- 1476
            + +  C G +  +YT+A LY QL Y+  L D ++ +  +  S +                
Sbjct: 1343 FIKENCWGTMRLEYTDAKLYNQLLYYRSLFDVEKILNAVRGSQRFGEHLHYTFYNNFYGG 1402

Query: 1477 -PLEKELNKIRPVVALAASTVQRI 1499
             PL K  ++IRP+       + ++
Sbjct: 1403 GPLTKNADEIRPLTTANQQVLSKL 1426


>gi|49618933|gb|AAT68051.1| DNA polymerase alpha [Danio rerio]
          Length = 1389

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1235 (37%), Positives = 669/1235 (54%), Gaps = 134/1235 (10%)

Query: 268  KEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAG---WKEVSGGNMVLDEGKSGLNCQE 324
            +E VK++   + K   K+  K   +   L+S   G   W+++  G  +  E    +    
Sbjct: 254  EEPVKEKAEPETKPIVKVEPKTEPQDKMLISGLVGGMGWEKMEEGKPI--ETPVEVQVDS 311

Query: 325  SEFEV----DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQR 378
            S+  +    D D    FY LDA E       G ++LFGKV  ++   H SCCV VKN++R
Sbjct: 312  SQLPLVEGPDGDMVFRFYWLDAFEDQYN-QPGVVFLFGKVWIESAEAHVSCCVAVKNIER 370

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
             +Y +P       +  + L    +   +  M   K+  +++   K           +  +
Sbjct: 371  TMYLLPR------EHKVNLATGEKGVAVGMMDVYKEFNEISEKFK-----------IMKF 413

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
               PV + YAF   +IP+   Y L++ Y  + P LP+DLKG  F  + GT++S+LE FL+
Sbjct: 414  KSKPVTKNYAFEIPDIPSQSEY-LEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFLL 472

Query: 499  KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
             RK++GP WL ++  +   + Q +SWCK E        I V          PP+ V +I+
Sbjct: 473  NRKIRGPCWLDVT--TPQLSNQPISWCKVEAVAQKSDLISVVKD----LSPPPLVVMSIS 526

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
            LKTV N +   NEIVS + +  H   +D         +P   +HF           P+  
Sbjct: 527  LKTVQNPKTHQNEIVSIAALVHHTFPLDKAP-----PRPPFQTHFCESDT------PIKN 575

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            N +     S      L     ERALL     +++K+D DVL+GH+I GFDL+VLL R  V
Sbjct: 576  NFQIASAGSSLKIRTLF---YERALLGFFPFKMHKIDPDVLLGHDIFGFDLEVLLQRINV 632

Query: 679  CRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            C+VP   WSKIGRL+R+ MPKL  GR+ F         S   GRL+CD  + +++L+R  
Sbjct: 633  CKVPH--WSKIGRLRRANMPKL-GGRSGFAEK------SATCGRLVCDIEISAKELIRCK 683

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES-LMELIEYGETDAWLSMELMFHLSVLP 797
            SY+LT+L    L  +R  V P ++    Q   + L+ L+E    DA L +++M  L+VLP
Sbjct: 684  SYNLTELVSQILKAERPVVPPENISTFLQVDSTHLLYLLELTWMDAKLILQIMCELNVLP 743

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            L  Q+TNI+GN+  +TL G R++R EYLLLHAF  + +IVPDK  + K            
Sbjct: 744  LALQITNIAGNVMSRTLMGGRSERNEYLLLHAFHERDFIVPDKQFFKK------------ 791

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                  ++   ED   + D+      K ++  AYAGGLVL+PK G YDK+ILLLDFNSLY
Sbjct: 792  -----AQQDLGEDE--EGDSGKGKSNKTRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 844

Query: 918  PSIIQEYNICFTTVERSPDGL----------VPHLP-SSKTTGVLPELLKNLVQRRRMVK 966
            PSIIQE+NICFTTVER               +P LP  S   G+LP+ ++ LV+RRR VK
Sbjct: 845  PSIIQEFNICFTTVERGATNTRKKTEEDEDEIPELPDQSLEMGILPKEIRKLVERRRQVK 904

Query: 967  TWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
              MK       L +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL 
Sbjct: 905  QLMKEPDLNPDLYLQ-YDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILM 963

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
             T ++VQ  +NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++
Sbjct: 964  HTKEMVQR-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVF 1022

Query: 1084 KRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            K +LLLKKKKYAA+ V+ + DG      E KGLD+VRRDW  L+KE G++ + QILS+++
Sbjct: 1023 KSLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQN 1082

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             + ++E+I   L+++ E + +G + L  + I K+LTK P+ YPD K+ PHV VAL +   
Sbjct: 1083 RDTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQDYPDKKSLPHVHVALWINSQ 1142

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G      AGDTV Y+IC       GS++  +QRA   ++L+K  G   +D  YY SQQ+H
Sbjct: 1143 G-GKKVKAGDTVSYVIC-----QDGSNLAASQRAYTLEQLQKQPG-LNLDTQYYLSQQVH 1195

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRG 1319
            PVV R+C  IEG     +A  LGLDPS F+++  +    D +   L A   + DEERYR 
Sbjct: 1196 PVVGRICEPIEGIDAVLIATWLGLDPSHFRAQ--QQQREDEADDFLGAPAQLTDEERYRD 1253

Query: 1320 CEPLILSCPSCSS--TFD--CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
            CE    +CP C +   +D       S++ +S+      P           C   P + + 
Sbjct: 1254 CERFTFTCPDCGTENIYDNVFEGTGSTLQLSLKSCCHVP-----------CGGSPMDHQV 1302

Query: 1376 GRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYP 1435
                   I N+++      +  YY G ++C+D+ C+     L    I  +  G +CP   
Sbjct: 1303 ------QIGNKLQLDIRRHIRRYYSGWLLCEDQACRNRIRRLP---IAFSRSGPICPACL 1353

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
            R    L  +Y+E  LY QL+++ ++ D +  I K+
Sbjct: 1354 RST--LKPEYSEKALYNQLSFYRYIFDWEYAINKV 1386


>gi|449678979|ref|XP_002158235.2| PREDICTED: DNA polymerase alpha catalytic subunit [Hydra
            magnipapillata]
          Length = 1531

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1464 (34%), Positives = 754/1464 (51%), Gaps = 159/1464 (10%)

Query: 42   SVGYNIKLENPIYDTVAEDEYDALVARRREE-------------ARGFIVDDDGLGYGDE 88
            S+   +  E  +Y+ V ED+Y  LV  R+EE                 I DDD      E
Sbjct: 151  SLAKKVGKEEDVYELVDEDKYAQLVQDRQEEEWIVDDDGGGYVDDGREIFDDDPNEIPIE 210

Query: 89   GQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN------PSLTAAA 142
             +++        S SD +S       K      + KKE N  V   +       S+T+A 
Sbjct: 211  KKKKT-DKESKGSKSDVKSSKITNLFKSANCITKRKKETNVTVEGDSVLEDILNSITSAT 269

Query: 143  AMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSV---SSN 199
               G    S     +++  ++K +K   S   I++   +F    +     ++ +   +++
Sbjct: 270  TTSG----SKYHNRSSL--QNKTQKHSHSTRNIEKTQKQFTSQPSPHVEEKKIILKKTTH 323

Query: 200  IKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKE--LKWESDNSTE 257
            ++ F  +   +      ++    + +N D+  ++ QI +C+   +  E     ++DN  E
Sbjct: 324  VRDFTHIVKKENIDSGASDLHKDINQNKDVDTDYNQI-DCETFSQDTEKYASQDTDNFIE 382

Query: 258  LTKRDNFVE--VKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDE 315
              K  + +E    ++  DE+   ++E   L  K S ++     +   +++V         
Sbjct: 383  KVKDQSLIEDGFNDEFSDEMVTLIEE-TDLTPKTSIKQSTKFRSLVAYEDVFDKKEEPLP 441

Query: 316  GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVV 373
              S ++       ++ D  L F+ LDA+E    +  GT+YLFGKV  +A   + SCCV V
Sbjct: 442  DTSSISSSLPTSNINGDDVLRFFWLDAYED-RFSQPGTVYLFGKVWIEASKCYVSCCVAV 500

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            KN+ R +Y +P         I K       ++I     RK L                  
Sbjct: 501  KNIDRQLYILPRKTELHQGAIAK-------NKIMEFKCRKVL------------------ 535

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSAL 493
                       ++YAF + E+P    Y L++ Y    P L +DLKGE F  + G+++++L
Sbjct: 536  -----------KKYAFDKVEVPYEAEY-LELLYSADQPQLQSDLKGETFSHIFGSNTTSL 583

Query: 494  ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            EL  + +K++GPSW+ + KF   P  Q VSWCK E  VD P  I V   S      PP+ 
Sbjct: 584  ELLFLNQKLQGPSWIDV-KFPQIPK-QAVSWCKVEAFVDRPTFITVVEES---IPPPPLI 638

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            V ++++    +K  + +EI+S   +   +   D  +    +K     + F  V K    +
Sbjct: 639  VLSLSMLATTSK-TNAHEIISICGLVNPEVFFDRGVPDQCFK-----NSFCFVTKPSDQL 692

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P  F       N+K    +  C +SER++L  L+ ++  +D DV+VGH+I  F  DVLL
Sbjct: 693  LPYDFQSTIQKNNTK----IQVC-ASERSMLGLLLAKILAIDPDVIVGHDIQDFVFDVLL 747

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            HR    ++P   WSKIGRLKR+ MPK   G+   G   +  +++C  GRL+CD  + +++
Sbjct: 748  HRLDFNKIPH--WSKIGRLKRANMPKHLHGKQ--GFNVTDKVIAC--GRLVCDIKISAKE 801

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHL 793
            L+R  SY+LT++    L K R ++ P ++LK  Q  E+L+ ++ Y   DA   +++M+ L
Sbjct: 802  LMRCKSYNLTEICSFVLKKQRNDLLPEEILKNLQKTENLLNMLNYNRADAMYQLQIMYEL 861

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
            ++LPL  Q+T I GN+  +TL G R++R EYLLLHAF  K YI+PDK      +  AK+ 
Sbjct: 862  NILPLAYQITGICGNVMSRTLLGGRSERNEYLLLHAFFKKNYILPDK------SYGAKKD 915

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                 +D++V++                 +K ++ P YAGGLVLEPKKG YDKYILLLDF
Sbjct: 916  FKLNEKDKDVKQT----------GVSKKPQKSRKKPTYAGGLVLEPKKGFYDKYILLLDF 965

Query: 914  NSLYPSIIQEYNICFTTVER---SPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWM 969
            NSLYPSIIQEYNICFTT+ R   S    V   P  S      PE+ + LV+RR+ VK  +
Sbjct: 966  NSLYPSIIQEYNICFTTISRETFSNGAEVKISPEWSLELWEQPEVTR-LVERRKQVKQLL 1024

Query: 970  KTA---SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            KTA   S L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T 
Sbjct: 1025 KTAPQQSDLYL-QYDIRQKALKLTANSMYGCLGFSESRFYAKPLAALVTMKGREILMKTK 1083

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL Q  L LEVIYGDTDSIMI++  +D+ + + I  KV  EVNK Y+ LEID+DG++K M
Sbjct: 1084 DLAQ-ALGLEVIYGDTDSIMINTNSNDLNEVRKIGSKVKSEVNKLYRTLEIDIDGIFKSM 1142

Query: 1087 LLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            LLLKKKKYAAV V+ K DG   E  E KGLD+VRRDW  L+KE G + +++ILS +  + 
Sbjct: 1143 LLLKKKKYAAVVVEIKDDGKLVEHTEMKGLDIVRRDWCGLAKESGSYVINEILSSKPRDV 1202

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            ++E+IH  L  V + + +G+V +EK+ I K LTK P+ YPD K+ PHV VALRL   G  
Sbjct: 1203 ILENIHEFLRDVAKKLSNGEVEMEKFEINKCLTKNPDEYPDKKSLPHVTVALRLMAQGRR 1262

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
               + GDT+ YIIC        S +   QRA HP+E  K +    ID  YY S Q+HPVV
Sbjct: 1263 V--AVGDTITYIIC-----DDNSKLPATQRAYHPEECLK-NSNLKIDYHYYLSNQVHPVV 1314

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
            SRLC  IEGT    +A+CLGLDP+ ++   S ++  D    L   + DEER++  E   +
Sbjct: 1315 SRLCDPIEGTDSSFIAECLGLDPTGYK---SSSVQQDEQGLLTVLMTDEERFKDIEKFFV 1371

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C   S        CS     V  K S      N      C  C +     ++      N
Sbjct: 1372 RCNIES--------CSLFKQEVEFKGSFD----NKVDPFVCSSCNQPYHRNKLH-----N 1414

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-K 1444
             +K     F++ YY   M CDD +C Y +  ++++    A+   +C    +C  R +   
Sbjct: 1415 CLKLFIRNFINRYYSCWMSCDDRSCGYVSRHISVKSFMHAQ---IC---NQCGKRNIHVD 1468

Query: 1445 YTEADLYKQLTYFCHLLDTQRGIE 1468
            Y++  LY QL Y   L D  +  E
Sbjct: 1469 YSDTMLYNQLIYLSRLFDVNKTSE 1492


>gi|62086807|dbj|BAD92010.1| DNA polymerase alpha catalytic subunit [Caiman crocodilus]
          Length = 1419

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1211 (38%), Positives = 677/1211 (55%), Gaps = 119/1211 (9%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            D D    FY LDA+E       G ++LFGKV  ++   + SCCV VKN++R VY +P   
Sbjct: 283  DGDQVFRFYWLDAYEDQYN-QPGVVFLFGKVWIESAKAYVSCCVTVKNIERTVYLLP--- 338

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              +  E+        E+ ++ M+  K+  D  + +K +I           +    V++ Y
Sbjct: 339  --RKMEVNLSSGQETENPVTIMSVYKEFND-QISVKYKIMK---------FKSKKVEKHY 386

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF   ++PA  +Y L++ Y  +   LP DLKGE F  + GT+SS+LEL L+ RK+KGP W
Sbjct: 387  AFEIPDVPAKSDY-LEVRYSAEFSRLPQDLKGETFSHVFGTNSSSLELLLMSRKIKGPCW 445

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I   +  P+ Q VSWCK E     P  + V          PP+ V +++++T+ N + 
Sbjct: 446  LEIK--NPQPSSQSVSWCKMEAVALKPDLVNVIKD----LPPPPLVVISLSIRTIPNPKT 499

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NE+++ + +      +D         +P   +HF V+ K +  IFP  F      +N+
Sbjct: 500  HQNEVMAIAALVHQNFCLDKAP-----PQPPFQTHFCVISKPNDCIFPYDFKDVIKTKNA 554

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K     +   ++ER LL   + +++K+D DV+VGHNI GFDL+VLL R   C+VP   WS
Sbjct: 555  K-----IEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINACKVPH--WS 607

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            KIGRL+RS MPKL  GR  F    +    +C  GR++CD  + +++L+R  SY L++L  
Sbjct: 608  KIGRLRRSNMPKL-GGRGGFAERNA----AC--GRMICDVEISAKELIRCKSYHLSELVH 660

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L  +R  + P ++ KMF     LM ++E   TDA   +++M  L+VLPL  Q+TNISG
Sbjct: 661  QILKTERITIPPEEIRKMFSNSSHLMCMLENSWTDAKFILQIMCELNVLPLALQITNISG 720

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +T+ G R++R EYLLLHAF  + YIVPDK  + K                  ++L 
Sbjct: 721  NIMSRTMMGGRSERNEYLLLHAFYERDYIVPDKQVFKKPQ----------------QKLV 764

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +ED +F++ T     + G++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NIC
Sbjct: 765  DEDEDFEDQTK---SKIGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNIC 821

Query: 928  FTTVERSPDGL-----------VPHLP-SSKTTGVLPELLKNLVQRRRMVKTWMKTAS-- 973
            FTTV+R    +           +P LP SS   G+LP+ ++ LV+RRR VK  MK     
Sbjct: 822  FTTVQRVSSDVQKRTEEGEEEEIPELPDSSLEMGILPKEIRKLVERRRQVKQLMKQPHLN 881

Query: 974  -GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
              L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  
Sbjct: 882  PDLYL-QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ-K 939

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            +NLEVIYGDTDSIMI++   ++ +   +  K+  EVN+ YK LEID+DG++K +LLLKKK
Sbjct: 940  MNLEVIYGDTDSIMINTNSTNLEEVLKLGNKIKSEVNRLYKLLEIDIDGIFKSLLLLKKK 999

Query: 1093 KYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KYAA+ V+   DG      E KGLD+VRRDW  L+KE G++ + QILS+++ + +VE+I 
Sbjct: 1000 KYAALTVEPTGDGNYVTKQELKGLDIVRRDWCDLAKESGNYVIGQILSDQTRDIIVENIQ 1059

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
              L+ + E++ +G V + ++ I K LTK P+ YPD K+ PHV VA+ +   G      +G
Sbjct: 1060 RRLIDIGENVTNGTVPISQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQG-GRKVKSG 1118

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            DTV Y+IC       GS++  +QRA  P++L+K +    ID  YY SQQIHPVV+R+C  
Sbjct: 1119 DTVSYVIC-----QDGSNLSASQRAYAPEQLQKQEN-LTIDTQYYLSQQIHPVVARICEP 1172

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL--LFAVGDEERYRGCEPLILSCPS 1329
            I+G     +A  LGLDPS+F+         +  + L  L    DEE+YR CE     CP 
Sbjct: 1173 IDGIDSVLIATWLGLDPSQFKVHHHYHKDEENDAFLGGLAQFTDEEKYRDCERFKFPCPK 1232

Query: 1330 CSS--TFDCPAVCSSICMSVS-EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C +   +D     S   +  S ++ SK E           P C             + N+
Sbjct: 1233 CGTENIYDSVFDGSGQFLEPSLQQCSKKECN-------ELPFC---------HVTQMNNK 1276

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KY 1445
            +      ++  YY G ++C+D  C+  T  L L     +  G +C     C   ++R +Y
Sbjct: 1277 LLFDIRCYLKKYYNGWLICEDPACQNRTRRLPLSF---SRNGPLC---QACRKAVLRPEY 1330

Query: 1446 TEADLYKQLTYFCHLLDTQRGIEKMEI-SAKIPLEKE--LNKIRPVVALAASTVQRIRER 1502
            ++  LY QL ++ ++ D +  ++K+     K+  EK   L KI+ V     +TV      
Sbjct: 1331 SDKALYNQLCFYRYIFDVEYAMDKVITEEEKVWAEKNLALKKIKEVYKKLKNTVDTCLSM 1390

Query: 1503 CAYGWVKLNDI 1513
             +Y  V L  +
Sbjct: 1391 SSYSEVNLGKL 1401


>gi|321468910|gb|EFX79893.1| hypothetical protein DAPPUDRAFT_304346 [Daphnia pulex]
          Length = 1439

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1513 (33%), Positives = 786/1513 (51%), Gaps = 182/1513 (12%)

Query: 9    AGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVAR 68
            +GR R    +   ++ A ++LK L+      G      +   + +Y+ V E EY   V R
Sbjct: 13   SGRTRRTKQDREGKSAAFQKLKDLK------GTKNKVTLTEVDNVYEEVDEREYSKRVQR 66

Query: 69   RREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKR--GKKE 126
            R+E+   +I+DDDG GY ++G+E         + +  ++    R  KK+ + K   G+K 
Sbjct: 67   RQED--DWIIDDDGSGYVEDGREVFDDDLDDDNVA--QAKGAARGHKKKDLSKGVPGRKN 122

Query: 127  NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF---- 182
            N +N                      ML   +   K KD K K+ + ++ +++ E     
Sbjct: 123  NIKN----------------------MLIGMSSKNKEKDAKTKDDD-ILGDIMQELNSTP 159

Query: 183  --AP-DEADRERRRRSVSSNIKSFVSVN--SVKTNSQLVTNSTNSVKENSDLINNFVQIQ 237
              AP  ++    ++++++S  +    ++  +++      +N  N+  +       F+  Q
Sbjct: 160  LNAPLRQSVSTLKKKTITSGYQQLFKLDHLNLRILFYFFSNLFNTNNKPFHTTFTFMCRQ 219

Query: 238  NCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLL 297
              D+ +   + + ++  S+E +   ++   +E +      D++E K+    I     P +
Sbjct: 220  PMDIDQFDSQPEIKNTQSSEASITTSYTPCEESI------DLQELKQ-TPTIRFVAFPSI 272

Query: 298  ---SATAGWK------EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSG 348
                 T+GW+      +V+    VLD G + L   + E   D +  L  Y  DA+E    
Sbjct: 273  YEFDLTSGWETIKNNVDVNQSVAVLDLGSNELPLTQGE---DGEQFLRMYWFDAYED-PY 328

Query: 349  ANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRI 406
               GT++LFGK+  ++   + SCCV VKN+++ +Y +P   +        +++   +   
Sbjct: 329  MQPGTVFLFGKIFIESAKAYVSCCVSVKNIEKHIYVLPRDTV--------VDQRTGQDTG 380

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY 466
            +P+ F     DV     T +A++     +  +    V ++Y F    IP    Y L++ Y
Sbjct: 381  TPVNF----MDVYEEFNTRVADRY---KILQFKSRRVLKKYGFEPPSIPRESEY-LEVKY 432

Query: 467  PFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
               +  LP +LKG  F  + G ++SALE FL++++VKGP WL+I   +   A   VSWCK
Sbjct: 433  S-AEHSLPTNLKGATFSHVFGANTSALENFLLEKRVKGPCWLNIK--NPQKANPHVSWCK 489

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
             E  V +   I +    +     PP+ V A+NL+TV N R    EIV+   +  ++  +D
Sbjct: 490  VEAFVSNMDQIELDDKRE---APPPLAVMALNLRTVVNNRTQQVEIVAIGCLIQNEFHVD 546

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
                     +P    HF ++ +     +P+  +   T + +K     L    +ERALLN 
Sbjct: 547  RAA-----PQPPFQQHFCLLSRPSEEPWPL--DHRDTMKTTKLTKIELA--ENERALLNL 597

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
             + ++ K+D DV+VGH+++ +DLD+LLHR    +V    WS++GRL+R+ MP  +     
Sbjct: 598  FLAKINKIDPDVIVGHDVASYDLDILLHRFTQNKV--DQWSRLGRLRRTNMPMSK----- 650

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT--QLNKDRKEVGPHDVLK 764
             G   S  +MS   GRL+CD  + +++L+R  SY L  L +    LN  R ++    V K
Sbjct: 651  -GVSRSHLVMS---GRLVCDVKISAKELIRARSYDLETLCQQVLHLNGVRPDLSSDSVKK 706

Query: 765  MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            M+ T  +L+ +I     D   ++ LM+ L+VLPL  Q+T+I+GNL  +TL G R++R EY
Sbjct: 707  MYSTSSNLLGMIAITMQDGANTLRLMYELNVLPLALQITSIAGNLLSRTLLGGRSERNEY 766

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            LLLHAF  K +IVPDK  + K  K          ED + E+++ E+AN          +K
Sbjct: 767  LLLHAFHEKGFIVPDKQAFKKSKKG---------EDSD-EDVSTENAN--------RSKK 808

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--------PD 936
            G+R PAYAGGLVL+PK+G YDK++LL+DFNSLYPSIIQE+NICFTTV+R          +
Sbjct: 809  GRRKPAYAGGLVLDPKRGFYDKFVLLMDFNSLYPSIIQEFNICFTTVDRQVVTKATEGEE 868

Query: 937  GLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWM--KTASGLKIQQLDIQQQALKLTANS 993
             ++P LP S    G+LP  ++ LV  RR VK  +  K +  L + Q DI+Q+ALKLTANS
Sbjct: 869  EILPDLPDSTLPLGILPTEIRKLVDSRREVKKLINDKLSKDL-LLQYDIRQKALKLTANS 927

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLGFSNSRFYAKPLA LIT +GREIL  T DLV+  +NL+VIYGDTDS+MI S   D
Sbjct: 928  MYGCLGFSNSRFYAKPLAALITSKGREILLQTRDLVR-KMNLDVIYGDTDSLMIDSNSVD 986

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIE 1111
              +   +  K+ QEVNK YK LE+D+DG+++R+LLLKKKKYAAV V    +D     V +
Sbjct: 987  YDQVMKVGLKIKQEVNKLYKHLELDIDGVFQRLLLLKKKKYAAVTVTQVIRDNKKEMVTQ 1046

Query: 1112 R--KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            +  KGLD+VRRDWS L+   G + L QIL + S ++ +  I  +L  +++  ++G + L 
Sbjct: 1047 QEVKGLDIVRRDWSQLATRAGKYALEQILGDLSADERIARIQQNLEDIRDGFQNGTIDLS 1106

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
               ITK LTK PE YPDAKN  HVQVA+R    G       GDTV +IIC       GS+
Sbjct: 1107 LLEITKQLTKNPENYPDAKNLSHVQVAIRTNSRG-GKKLVQGDTVSFIIC-----QDGSN 1160

Query: 1230 VGIAQRARHPDELK-KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
            +   QRA   +ELK   +G    DI YY +QQ+HPVVSRLC  +EG    R+A+ LG+D 
Sbjct: 1161 MAATQRAYSMEELKMPTNGHLKPDIQYYLAQQVHPVVSRLCDLLEGIDAVRIAEFLGIDA 1220

Query: 1289 SKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVS 1348
            S ++S  + +   D  S     V DEER++ CE     C   +  F+          +V 
Sbjct: 1221 SGYRSTQAASNEYDTGSP---PVTDEERFQSCEKFYYQCSDKACGFEMSMD------NVF 1271

Query: 1349 EKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCD 1406
             K      E+   R     C K P   E        + N++       + +YY G ++C+
Sbjct: 1272 RKTDDGNIEFALSRCGNPNCKKTPFSAEK------FLVNRLTHTVRKHIQLYYAGWLVCE 1325

Query: 1407 DETCKYTTCSLNLRLIGDAERGTVCPNYPRCNG----RLVRKYTEADLYKQLTYFCHLLD 1462
            D +C   T  + L+             +P C G     +  +Y + DLY QL Y+ H+ D
Sbjct: 1326 DRSCATRTRRIPLKSTN---------THPVCIGCGTSNMDPEYNDLDLYTQLCYYQHMFD 1376

Query: 1463 TQRGIEKMEISAK 1475
              + I +++ S +
Sbjct: 1377 ASKAISQLQPSER 1389


>gi|302686118|ref|XP_003032739.1| hypothetical protein SCHCODRAFT_67364 [Schizophyllum commune H4-8]
 gi|300106433|gb|EFI97836.1| hypothetical protein SCHCODRAFT_67364 [Schizophyllum commune H4-8]
          Length = 1394

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1296 (36%), Positives = 671/1296 (51%), Gaps = 197/1296 (15%)

Query: 271  VKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQE 324
             K EV  D K     NA  +  K+  +     W  V     V +  K G       + Q 
Sbjct: 237  AKPEVLVDKKPFPSANATPAKPKEKEIDTKPSWINVYESLNVAETDKLGPSTTTHTSAQH 296

Query: 325  SEFE-VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTH--HSCCVVVKNMQRCVY 381
            +  + ++ DGSL F+ LD  E       G +Y  GK+K   T+  HSCCV V+N++R ++
Sbjct: 297  AGIDALEPDGSLRFFWLDYLEL-----NGNVYFIGKLKDKKTNQWHSCCVTVENIERNLF 351

Query: 382  AIP---------NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
             +P         +G ++ TDE +++E    +             D+  G           
Sbjct: 352  VLPREKRVEQGSDGEIYDTDEPVEMEDVYNDF------------DMIRGA---------- 389

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
            L +  +    VKR+YAFG  E+P GE+  LK+ YPF +P +P D    N   + GT++SA
Sbjct: 390  LKIKQWKGKFVKRKYAFGDKEVPRGESTWLKVVYPFTEPTIPMDAISPNILKIFGTNTSA 449

Query: 493  LELFLVKRKVKGPSWLSIS----KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA- 547
             EL ++KRK+ GP WL I      F        VSWCK+E TV  PKDI     + H A 
Sbjct: 450  FELLVLKRKIMGPCWLQIKNPDVNFKG------VSWCKFEATVSDPKDINPFPETDHQAP 503

Query: 548  -EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVV 606
             E PP+TV +++++T+ N  Q+  EIV A+    H   ID P      + P  +  F  V
Sbjct: 504  KETPPLTVMSLSVRTIVNHVQNKREIVCATARIWHNLDIDDPTPPE--RLPCTVQTF--V 559

Query: 607  RKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
            R LD   FP  F  EA  + +  G+  +    +ER LL+ L+I L++ D+DV+VGH+  G
Sbjct: 560  RPLDK--FPPRF--EACAKQNMRGT--ITAAKNERMLLSSLLIALHRADADVIVGHDFVG 613

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
              LDVLL R +   V    WS+IGR +RS+ P + K       G +   M+   GR+LCD
Sbjct: 614  VTLDVLLTRMKELTV--DHWSRIGRFRRSKWPHIGK------EGTNIRFMN---GRMLCD 662

Query: 727  -TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGET 781
             +   ++ ++   ++S+T++ KT L  +R+++ P D    F       + L+  + + E 
Sbjct: 663  LSSDGAKSMIPSTTWSMTEMCKTHLKVERQDIDPDDTASYFDGSVSNPDRLLTFVRHCEL 722

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA L M +   + +LPLT+QLT ++GN W KTL G RA+R EY+LLH F   KYI PDK 
Sbjct: 723  DAHLQMAIAAKVQILPLTKQLTQLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDK- 781

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                          +G +   V E  +E+            +KG +   Y GGLVL PK+
Sbjct: 782  -------------TYGKKAAPVREDPDEEGG-------GTSKKGAKRDKYKGGLVLAPKR 821

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD-GLVP----HLPSSKT-TGVLPELL 955
             L++ YIL++DFNSLYPSIIQEYNI FTTV R  D G  P     LPSS+   GVLP L+
Sbjct: 822  QLWETYILVMDFNSLYPSIIQEYNIDFTTVSRGTDIGQTPDDEAELPSSEAGQGVLPRLI 881

Query: 956  KNLVQRRRMVKTWMKTASGLKIQQL-----DIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
              LV RRR VK  MK  +  + Q L     DI+QQALKLTAN+M+               
Sbjct: 882  ATLVSRRRQVKNLMKDKNVTQAQYLQVCIYDIKQQALKLTANTMF--------------- 926

Query: 1011 AELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
                                  L+L V+YGDTDS+ ++S   +++KA  IA +  + VN 
Sbjct: 927  ----------------------LSLLVVYGDTDSVFVNSNQTELSKALKIANEFKKAVND 964

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            +Y+ LEIDLDG+++R+LLL+KKKYAA+KV   DG      E KGLDM RR++S LSK V 
Sbjct: 965  RYRLLEIDLDGVFQRLLLLQKKKYAAIKV---DGS-TTTTEIKGLDMKRREYSQLSKRVS 1020

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
             + L +ILS    E VVE IH  L K+ ED+R G+V L++++I K L K PE YPDAK+Q
Sbjct: 1021 QYVLDRILSGEPTEIVVEEIHEYLAKIGEDVRGGKVPLDEFIIFKRLGKNPEDYPDAKSQ 1080

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            PHVQVALR+K  G S    AGD +PY+ C  +G  +      A RA+HPD++++     +
Sbjct: 1081 PHVQVALRMKAKGSS--ARAGDVIPYVFCLPEGEETAGKTSQADRAKHPDDVRRSGSGLI 1138

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS-SSLLF 1309
            ID ++Y SQQ+ P + RLC  IEGT   RLA+CLGLDP ++  K S + S + S S+L  
Sbjct: 1139 IDYEHYLSQQVLPPIERLCEPIEGTDRARLAECLGLDPQRY--KVSNSASDELSISTLET 1196

Query: 1310 AVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKC 1369
             + D ER++ C    + C  C +T D  A  +   +  +  P  P    +     +C  C
Sbjct: 1197 QMSDRERFKDCVAFFVRCRKCKAT-DVFARLNEQTVDPTGVPRDPMLHPD---GAKCTAC 1252

Query: 1370 PEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGT 1429
             E     ++ P  +  Q++ Q  GF++ YY+G  +CDD TC   T  + +        G 
Sbjct: 1253 QE-----KLQPWSLEMQLQAQIRGFITRYYEGWTVCDDPTCGQRTRRMGVYGHNCVREG- 1306

Query: 1430 VCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE--KMEISAKIPLEKELNKIRP 1487
                   C G++  +YT+A LY QL YF  L D ++  E  K + +A++  +K       
Sbjct: 1307 -------CQGKVSFEYTDAQLYTQLKYFSSLFDVEKAFEIAKSKGNARVEHDK------- 1352

Query: 1488 VVALAASTV----------QRIRERCAYGWVKLNDI 1513
            V  LAA  V           R  + C   WV LN++
Sbjct: 1353 VQGLAAGNVVLLDTLRACTDRYLDMCGRRWVSLNNL 1388


>gi|317419845|emb|CBN81881.1| DNA polymerase alpha catalytic subunit [Dicentrarchus labrax]
          Length = 1425

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1257 (38%), Positives = 682/1257 (54%), Gaps = 144/1257 (11%)

Query: 265  VEVKEKVKDEVNEDVKECKKLNAKISTEKDP--------LLSATAG--WKEVSGGNMVLD 314
            V V+E+     NED  E K   A++S + +P        LLS+  G  W +   G  V  
Sbjct: 211  VGVEEEKPAMKNED--ELKAAAAQVSVKVEPKSEPQDPVLLSSRIGSSWGQEEEG--VAS 266

Query: 315  EGKSGLNCQESEFEV----DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHS 368
            E ++ +    S+  +    D +    FY LDA E    +  G +YLFGKV  ++  +H S
Sbjct: 267  EAQAEIQVDSSQLPLVEGADGEQVFRFYWLDAFED-PYSQPGVVYLFGKVWIESAMSHVS 325

Query: 369  CCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIAN 428
            CCV VKN++R +Y +P           K+     E   +P+     L DV      E  +
Sbjct: 326  CCVTVKNIERTMYFLPRE--------YKVNTKTGEVSDTPVG----LMDVY----QEFND 369

Query: 429  QLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGT 488
                  +  +    V++ YAF   ++P+   Y L++ Y  + P LP DLKG  F  + GT
Sbjct: 370  LSEKFRIMKFKSKKVEKNYAFEIPDVPSQCEY-LEVRYSAEFPALPLDLKGATFSHIFGT 428

Query: 489  HSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE 548
            ++S+LE FL+ RK+KGP WL I        P  VSWCK E        + V         
Sbjct: 429  NTSSLEHFLLSRKIKGPCWLDIKTPQLISQP--VSWCKVEALALRSDLVTVVKD----LS 482

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             PP+TV +I+LKT+ N +   NEIVS + +  ++  +D         +P   +HF VV K
Sbjct: 483  PPPITVMSISLKTIQNPKTHHNEIVSLAALVHYQFYMDKAP-----PQPPYQTHFCVVSK 537

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                IFP  F +    +N K         S+ER LL   + +++K+D DVLVGH+I GFD
Sbjct: 538  PADCIFPYDFKEAVKKKNGKVE-----IASTERTLLGFFLAKMHKIDPDVLVGHDIFGFD 592

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            L+V+L R  VC+VP   WSK+GRL+R+ MPKL  GR  F         S   GRL+CD  
Sbjct: 593  LEVILQRINVCKVPH--WSKMGRLRRANMPKL-GGRGAFAEK------SATCGRLVCDVE 643

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSME 788
            + +++L+R  SY LT+LA   L  +R  V   ++  ++     L+ L+E   TDA L ++
Sbjct: 644  ISAKELIRCKSYHLTELAAQVLKMERATVPQENIKNLYSDSPHLLYLLELTWTDAKLILQ 703

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            +M  L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF  K YIVPDK ++     
Sbjct: 704  MMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFHDKNYIVPDKPSF----- 758

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                        R  +  T E  + D        +      AYAGGLVL+PK G YDK++
Sbjct: 759  ------------RKAQLDTVEGEDMDAGKGKRKKKA-----AYAGGLVLDPKVGFYDKFV 801

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPDG-----------LVPHLPSSKT-TGVLPELLK 956
            LLLDFNSLYPSIIQE+NICFTTV+R                +P +P S    G+LP+ ++
Sbjct: 802  LLLDFNSLYPSIIQEFNICFTTVQREAHSTQKKNEEDEAEEIPEIPDSNLDMGILPKEIR 861

Query: 957  NLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
             LV+RR+ VK  MK       L +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L
Sbjct: 862  KLVERRKQVKQLMKQQDINPDLYLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAAL 920

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL  T D+VQ  +NLEVIYGDTDSIMI++    + +   +  KV  EVNK YK
Sbjct: 921  VTHKGREILMHTKDMVQK-MNLEVIYGDTDSIMINTNSRSLEEVFKLGNKVKAEVNKLYK 979

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV-IERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+DG++K +LLLKKKKYAA+ V+      Y V  E KGLD+VRRDW  L+KE G++
Sbjct: 980  LLEIDIDGVFKSLLLLKKKKYAALVVENHGEGRYSVKQELKGLDIVRRDWCDLAKECGNY 1039

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             + QILS+++ + +VE+I   L++V E + +G + L +Y I K LTK P+ YPD K+ PH
Sbjct: 1040 VIGQILSDQNRDVIVENIQKHLVEVGEKVAAGDIPLNQYEIHKALTKDPQDYPDKKSLPH 1099

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V VAL +   G      AGDT+ YIIC       GS++  +QRA   ++L+K +G   +D
Sbjct: 1100 VHVALWINSQG-GHRVKAGDTISYIIC-----KDGSTLAASQRAYALEQLQKQEG-LSLD 1152

Query: 1253 IDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA-- 1310
            I YY +QQ+HPVVSR+C  IEG     +A  LGLDPS+F+++  +    + +  +L A  
Sbjct: 1153 IQYYLAQQVHPVVSRICDPIEGIDSVLIATWLGLDPSQFRAQ-QQYQREEEADGMLGAPV 1211

Query: 1311 -VGDEERYRGCEPLILSCPSCSS--TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCP 1367
             + DEERY+ CE    +CP C +   +DC    +   +  S               +RC 
Sbjct: 1212 QLTDEERYKDCERFTFTCPQCGTDNIYDCVFEGAGSKLEPS--------------LMRC- 1256

Query: 1368 KCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
             C     +  I   + I+N++       +  YY G ++C+D+ C+  T  L    I  + 
Sbjct: 1257 -CHTPCGSRPIDYTVNISNKLLLDIRRHIKKYYSGWLVCEDQACQNRTRRLP---IAFSR 1312

Query: 1427 RGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN 1483
             G +CP   R   R   +Y+E  LY QL ++  + D          +AK+P   E N
Sbjct: 1313 HGPICPACTRATLR--PEYSEKALYNQLCFYRFIFDWDYA------AAKVPQGDERN 1361



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 40  GDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGL 99
           G+ + Y ++    +Y+ V E +Y  +V  R+E+   +I+DDDG GY ++G+E        
Sbjct: 2   GEKIKYEVEEFTSVYEEVDEQQYSKMVRERQED--DWIIDDDGTGYVEDGREIFDDDLDD 59

Query: 100 PSSSDDESL------DGQRSIKKQRIEKRGKKEN---NQNVRKP 134
               +++ +      D ++++KK  + K    ++   N NV++P
Sbjct: 60  DVVENNKGIKGAKGADSKKNVKKSVVAKPNTIKSLFMNSNVKRP 103


>gi|388583787|gb|EIM24088.1| hypothetical protein WALSEDRAFT_59081 [Wallemia sebi CBS 633.66]
          Length = 1399

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1210 (35%), Positives = 667/1210 (55%), Gaps = 132/1210 (10%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DDDG + FY LD  E     + G + LFGK          S  V ++ +QR ++ +P   
Sbjct: 281  DDDGCVRFYWLDYME-----DHGRVVLFGKAYDTEAKKWQSTSVTIEGIQRNLFVVPRQ- 334

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL----NVSNYIVSPV 443
                    KL+ D  E+               +  KT++  ++ ++     + ++    V
Sbjct: 335  -------FKLDDDENETG-------------EIVEKTDVFTEMESIRKASKIKSWAAKFV 374

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            KR YAF + ++P  E   LK+ Y F +P +P  + G+ F  + GT +S  ELF+VKR++ 
Sbjct: 375  KRSYAFEEKDVPREETDWLKVLYGFNEPAMPLGMTGKTFSHVFGTQTSPFELFVVKRRIM 434

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKT 561
            GP WL +    +    +  +WCK++ TV  PK ++  + S   A  E PP+T+ +++ ++
Sbjct: 435  GPCWLKLE--DAYVTQKGTTWCKHQFTVTDPKTVQFFNDSDADAPKEPPPLTIMSLSTRS 492

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            + N + +  E+V+A+        I+ P    +       S  T+VR L  G++P GF  +
Sbjct: 493  IVNHQLNCRELVAATARVWADVNIEDPTPPEQQAS----SSITLVRPL--GMYPPGFEMK 546

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
            A  +  K     +    +E+A+L+ ++  + + D DVLVGH++ G  L++LL+R    ++
Sbjct: 547  ARQQRPK-----IEPMRNEKAVLSNILASVQRHDPDVLVGHDLLGESLEILLNRMNEMKI 601

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLREV 738
            P+  WSK+GR++R +  K +  R                GRLLCD  L S   + ++   
Sbjct: 602  PN--WSKMGRVRRDKWLKAKFDRN----------KKITTGRLLCD--LSSDQGKSMISST 647

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL----ESLMELIEYGETDAWLSMELMFHLS 794
            ++S+T++  T L   R+++ P D    F +     + L+  +++ E DA  +M L   + 
Sbjct: 648  TWSMTEMVNTHLGTQREDIDPDDTAAYFDSYATSPDRLIHFVKHCEVDAVFNMALAAKVQ 707

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            +LPLTRQLTN++GN WG+TL G R++R E++LLH F  +K I PDK +            
Sbjct: 708  ILPLTRQLTNLAGNSWGRTLTGGRSERNEFILLHEFHRQKMICPDKLSRF---------- 757

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                 D+   +L     N D++ +    +KG R   + GGLV EPKKGL+DKYIL++DFN
Sbjct: 758  -----DKKAAQLEAAAENGDDEATTK--KKGGRKDKFKGGLVFEPKKGLWDKYILVMDFN 810

Query: 915  SLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTW 968
            SLYPSIIQEYNI FTTVER  D       +P +P+  +  GVLP+L+  LV RR+ VK  
Sbjct: 811  SLYPSIIQEYNIDFTTVERPEDDDNGEEKIPEIPAPGSGQGVLPKLIATLVNRRKQVKNL 870

Query: 969  MK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  K+ QLDI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T +GREIL  T 
Sbjct: 871  MKDKNATPAKLMQLDIRQMALKLTANSMYGCLGFEGSRFYARPLAALTTFKGREILTHTR 930

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L ++ + L+V+YGDTDS+ I+S       A  +A +  + VN +YK LEIDLDG++KR+
Sbjct: 931  ELAES-MQLDVVYGDTDSVFINSNAYSYDDALKVANEFKKHVNDRYKLLEIDLDGVFKRL 989

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LLL+KKKYAA+K+   +G   E  E KGLDM RR++S LSK V  + L QILS  S E V
Sbjct: 990  LLLQKKKYAAIKM--AEGK--ESTEIKGLDMKRREYSQLSKNVSQYVLDQILSGDSTEVV 1045

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            VE IH+ L ++ E +R+G+V L+ Y+I K L K PE YPD+K+QPHVQVA+R+K  G + 
Sbjct: 1046 VEHIHDYLTEMGESIRNGKVPLDDYIINKRLGKDPEQYPDSKSQPHVQVAMRMKSKGGT- 1104

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
               +GD + Y+ C        S  G A+ A HP++L++ D    +D +YY + Q+ P + 
Sbjct: 1105 -AKSGDVISYVFCASPD-GVASKTGKAENAYHPEDLRRKDSNLSLDYEYYITSQVLPPIE 1162

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILS 1326
            RLC +IEGT   RLA+CLGLDP++FQ+  +   +     +L   + D+ER+R  E   + 
Sbjct: 1163 RLCDNIEGTDRSRLAECLGLDPARFQNHSAGNSNDKEFQTLESQMSDKERFRNAEKFSIR 1222

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            CP C+   +  ++  S   SV              R + C  C     +  + PG +  Q
Sbjct: 1223 CPGCTEHTEFGSMLDSTN-SVQT------------RGIVCQSC-----SNILPPGSVNIQ 1264

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYT 1446
            ++ Q   F++ YY   ++C+D++C   T     R++    +  +  N   C G +  +Y 
Sbjct: 1265 LEMQLRQFIAKYYDANLVCNDQSCGNKT-----RMMSVYGKRCLMSN---CLGVMKHEYD 1316

Query: 1447 EADLYKQLTYFCHLLDTQRGIEKMEIS---AKIPLEKELNKIRPVVALAASTVQRIRERC 1503
            +  LY Q+ YF  L D +R +++   S   A+I +  E NK  P++ +  +TV +  ER 
Sbjct: 1317 DQMLYNQMLYFARLFDVERILKQSNSSSNYAEIQVLCEKNK--PLLQVLHNTVSKFLERN 1374

Query: 1504 AYGWVKLNDI 1513
            A   V L DI
Sbjct: 1375 ARSVVSLTDI 1384


>gi|321259786|ref|XP_003194613.1| DNA polymerase alpha catalytic subunit [Cryptococcus gattii WM276]
 gi|317461085|gb|ADV22826.1| DNA polymerase alpha catalytic subunit, putative [Cryptococcus gattii
            WM276]
          Length = 1484

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1198 (36%), Positives = 651/1198 (54%), Gaps = 135/1198 (11%)

Query: 313  LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCC 370
            LD   + +   + E  +++DGSL F+ LD  EQ      G ++L GKV  K    + S C
Sbjct: 361  LDTVNAPVGSTKPENVLEEDGSLRFFWLDHLEQ-----DGVVHLVGKVLDKQTGKYVSAC 415

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            V+V  ++RC+Y  P    F    +   E D + S           +DV      E  +  
Sbjct: 416  VLVTGIERCLYLKPRAKRF----VRGFETDLDVSE----------EDVL----DEFESFR 457

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
              + +  Y    VKR+YAF   ++  GE+  L++ Y F  P +P D+ G  F  + GT++
Sbjct: 458  SQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQPTIPMDVSGATFSHIFGTNT 517

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--E 548
            +  ELF+V +K+ GPSWL I   +  P+ +  SWCK E  V  P ++   S +   A  +
Sbjct: 518  TPFELFVVNQKIMGPSWLEIKDIA--PSEKASSWCKLEFYVTDPSEVNPFSETDPSAPKD 575

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             PP T+ +I+L+T+ N R++  EI+S S+       I+ P    + +    L+  T+VR 
Sbjct: 576  TPPFTIMSISLRTIVNHRENKTEILSVSMRTWDNYNIEDPTPPDQLR--SQLN--TIVRP 631

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            ++   FP G   +A    S+          +ERALLN ++  +Y+ D DV+VGHN  G  
Sbjct: 632  IER--FPNGLESKARTERSQ-----FQTVKTERALLNSMLGMIYRYDPDVMVGHNFLGGG 684

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-T 727
             + LL+R +   + +  WS+IGR +R       KG  I   G++  +M   AGRL+ D +
Sbjct: 685  FEALLYRMK--ELKADHWSRIGRFRR-------KGMNISKMGSNVKLM---AGRLVADLS 732

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDA 783
               ++ ++   ++SLT++  T L   R+++ P D    F     + + L++ I   E DA
Sbjct: 733  SDAAKGMISSTTWSLTEMTNTHLKVQREDIDPEDTAGYFDHTATSPDRLIKFIRLCEVDA 792

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +  M +   + +LPLT+QLTN++GN W  TL G RA R E++LLH F   +Y+ PDK  Y
Sbjct: 793  FFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHRLEYVCPDKAPY 852

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKG 902
              +T+        G +D   E++                 KG+RG A YAGGLV EPK+G
Sbjct: 853  KVKTRPT------GDDDEGTEDII--------------AMKGQRGKAKYAGGLVFEPKRG 892

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHLPSSKT-TGVLPELLK 956
            L+DKYI+++DFNSLYPSIIQEYNI FTTV+R  D       +P +PSS    GVLP ++ 
Sbjct: 893  LWDKYIIIMDFNSLYPSIIQEYNIDFTTVDRDEDENAEEEKIPDVPSSDVPQGVLPRIIA 952

Query: 957  NLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
             LV RRR VK  MK  ++S  K+ Q DI+QQALKLTANSMYGCLGF+ SRF ++PLA L 
Sbjct: 953  TLVNRRRQVKALMKDKSSSPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALT 1012

Query: 1015 TQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
            T +GREIL  T +L ++ L L+V+YGDTDS+ ++S +    +A  IA +  + VN++YK 
Sbjct: 1013 TFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKKLVNERYKL 1071

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            LEIDLD +++R+LLL KKKYAAVK+   D       E KGLDM RR++S +SK+     L
Sbjct: 1072 LEIDLDAVFERILLLNKKKYAAVKI---DEAGERSTEVKGLDMKRREFSKVSKDASAAVL 1128

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +ILS  + E VVE IH  L K+ E +R+  + ++ Y+I K L K PE YPD K+QPHVQ
Sbjct: 1129 KEILSGEATEVVVEKIHELLTKLGEAVRNNDIPIDDYIIFKRLGKNPEDYPDKKSQPHVQ 1188

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            VALR+KQ G +    A D +PYIIC ++    G +   A RA HPD+L++   +  ID +
Sbjct: 1189 VALRMKQKGAT--VRAHDVIPYIICLDEHGKGGRTAS-ADRAFHPDDLRRQGSELRIDHE 1245

Query: 1255 YYASQQI-HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD 1313
            YY  QQI HPV+ RLC +IEGT   RLA+CLG   ++ Q K   T  S         + D
Sbjct: 1246 YYLDQQILHPVL-RLCETIEGTERARLAECLGT--AEAQEKEFFTFDSQ--------ISD 1294

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEV 1373
             +R+R  +PL L CPSC+       + S   +  + + +           + C  C    
Sbjct: 1295 TDRFRDADPLNLICPSCNEEAAFVGLPSDASVVSNIRAN----------GIVCNSC---- 1340

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
                I P  +  Q++ Q    +S YY G M CD E C   T ++ +        G  C  
Sbjct: 1341 -QSVIHPASLQLQLENQIRSHISKYYLGWMTCDGEGCGLRTRAMGV-------YGKRCLG 1392

Query: 1434 YPR--CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVV 1489
            + +  C G +  +YT+A LY QL Y+  L D ++ +  +  S +       ++IRP+ 
Sbjct: 1393 FIKENCWGTMRLEYTDAQLYNQLLYYRSLFDVEKILNAVRGSQR------FDEIRPLT 1444


>gi|403166928|ref|XP_003326779.2| DNA polymerase alpha subunit A [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375166785|gb|EFP82360.2| DNA polymerase alpha subunit A [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1602

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1177 (36%), Positives = 634/1177 (53%), Gaps = 121/1177 (10%)

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVY 381
            E+  E      L F+ LD  E       G +YLFGKV  +  + H +CCV+V+ MQR ++
Sbjct: 474  ETPTENSQGNRLKFFWLDYQEA-----EGVIYLFGKVFDQLSAKHVACCVIVEGMQRNLF 528

Query: 382  AIPNGPLFQTD--EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYI 439
             +P   +   D  E+   E D  +                     E+   L    ++ + 
Sbjct: 529  VLPRPTMVDEDGIEVKPTEDDVYD---------------------EVETVLEAHQITEFK 567

Query: 440  VSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVK 499
               VKR+Y F + ++PA  +   K+ Y +  PP+     G+ F  + GT +SA ELFL+K
Sbjct: 568  GKLVKRKYCFEEKDMPAECDEWFKVVYSYTKPPIARLTTGKTFSKIFGTGTSAFELFLLK 627

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA-EVPPVTVTAIN 558
            RK+ GP WL +            SWCK E+ V  PK I   S +   A E+PP+ + +++
Sbjct: 628  RKIMGPCWLDVQGAIPSTRATPASWCKLEVVVKDPKLINPLSDADSTAKEIPPLNIMSLS 687

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
            ++ + N + +  EIV  +V    +A ++  TP+     ++  ++  F  VR L    FP 
Sbjct: 688  IRDIMNHKDNKKEIVCVTVRMWQEANLEDTTPI----EQQSSVVKTF--VRPL--ASFPA 739

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
            G   EA  R+    + V      E  LL+ L+  +   D D++VG++++   LDV+LHR 
Sbjct: 740  G-THEACRRSMPPITPV----KEEHMLLSILLGTINSYDPDIIVGYDLANVALDVILHRM 794

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RD 733
            +  +  +S WS+IGR++R ++P LR G      G +  +++   GRL+CD  L S   + 
Sbjct: 795  RDLK--TSHWSRIGRMRREKLPSLRTG------GFNNHLLT---GRLVCD--LSSDGFKS 841

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMEL 789
            ++   ++SLT+L +  L   R+++ P +++  F +  +    ++  I++ E D++  M L
Sbjct: 842  MVTSTTWSLTELCQKYLQITREDIDPDEIVNFFDSTSAKPDRIINFIKHCEADSYFQMAL 901

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +  +  L LT+QLTN++GN W  TL G RAQR E++LLH F   K+I PDK ++      
Sbjct: 902  INKVQYLSLTKQLTNLAGNNWNSTLHGGRAQRNEFILLHEFHRHKFICPDKLSF------ 955

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                      DR     T            N   K  +   Y GGLV EPK+GL+DK+IL
Sbjct: 956  ---------NDRKTLAATTNTTG--EQGEGNGGNKAIKKDKYKGGLVFEPKRGLWDKFIL 1004

Query: 910  LLDFNSLYPSIIQEYNICFTTVERS-----PDGLVPHLPSSKT-TGVLPELLKNLVQRRR 963
            ++DFNSLYPSIIQEYNI FTTV R+      +  +P LP +    GVLP L+  LV RRR
Sbjct: 1005 VMDFNSLYPSIIQEYNIDFTTVNRAGCDDDENDQIPDLPPADMKQGVLPRLIATLVNRRR 1064

Query: 964  MVKTWMKTASGL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  MK       KI Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T +GREI
Sbjct: 1065 EVKKLMKAPDTPPSKIAQYDIKQMALKLTANSMYGCLGFEGSRFYARPLAALTTSKGREI 1124

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            L +T DL ++  NL+VIYGDTDS+MI++   D A A  I  +  + VN++YK LEID+DG
Sbjct: 1125 LTNTRDLAESQ-NLDVIYGDTDSVMINTNALDFAAANKIGNEFKKLVNERYKLLEIDIDG 1183

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPY-EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +++RMLLL+KKKYAA+KV   D M    ++E KGLDM RR++  LSK+   + L Q+LS 
Sbjct: 1184 VFERMLLLQKKKYAALKV---DAMTQARIVEVKGLDMKRREYCKLSKDASQYILEQVLSG 1240

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
             S E VVE IH  L ++ + ++ G+  L+ ++I K L K P+ YPD K+QPHVQVALR+K
Sbjct: 1241 LSTELVVEKIHEYLTELGQSVKDGKKELDDFIIHKKLGKDPKDYPDVKSQPHVQVALRMK 1300

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
              G  T   AGD +PYI C  +  SS +    A +ARHPDEL+  D  W ID DYY S Q
Sbjct: 1301 LKGNVTP-KAGDVIPYIFCLGEDGSSSTRSAQADKARHPDELRLADSPWKIDYDYYLSLQ 1359

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA-VGDEERYRG 1319
            + P + R+C  IEGT   RLA+CLGLDPS+F++  +    S      L + + D ER+ G
Sbjct: 1360 VLPPIERMCDPIEGTDRCRLAECLGLDPSRFKNIVATGQDSQREFHTLDSQIPDTERFSG 1419

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
              P  + C  C   F+     +     +S  PS           L CP    E       
Sbjct: 1420 TSPFEVRCRHCGEKFEFKGAQADTVGMIS--PS----------GLNCPNL--ECRKPLGV 1465

Query: 1380 PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-CN 1438
            P M A Q++ Q   F+  +Y+  ++CDD  C+  T  +++        G  C N    C 
Sbjct: 1466 PSM-ATQLEIQIREFIGKFYEAWLICDDAACRNRTRMMSV-------YGRKCLNTSMGCK 1517

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
            G++  +YT+  LY QL YF  L D  +   K + ++K
Sbjct: 1518 GQMSYEYTDKMLYNQLLYFHSLFDPSKAESKFKDTSK 1554



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 21 ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
           R + LE LKA R G +R      Y    +  IY+TV+ED+Y ++V  R  E   FI +D
Sbjct: 8  TRKQHLEALKAARAGQKRD-----YKASQDEAIYETVSEDQYKSIVKGRLAED-DFIEND 61

Query: 81 DGLGYGDEG 89
          D  GY D+G
Sbjct: 62 DDSGYVDQG 70


>gi|406695133|gb|EKC98448.1| DNA polymerase alpha catalytic subunit [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1445

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1164 (37%), Positives = 645/1164 (55%), Gaps = 128/1164 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL  + LD  EQ      G ++L GKV  +  + + S C+ +  +QR ++  P  
Sbjct: 328  LEQDGSLRMFWLDFQEQ-----DGVVHLIGKVLDRQSNKYVSACLSINGIQRNLFIKPRA 382

Query: 387  P--LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
               + QT+  M ++K                      + TE  +      +  +    V+
Sbjct: 383  KRMVGQTESDMDVDK--------------------TDVYTEFDSVRSKHGIDEWKCKFVQ 422

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF   +I  GE+  +K+ YPF  P +P    G  F  + GT+++A EL ++KR++ G
Sbjct: 423  RKYAFEDHDIERGESEWMKVTYPFTQPEIPMGTTGATFSHIFGTNTTAFELLVLKRRIMG 482

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTV 562
            P WL+I+   + P+ +  SWCK E TVD PK++   S     A  + PP+T+ +I L+T+
Sbjct: 483  PCWLNIT--GAVPSTKATSWCKIEFTVDDPKNVNPFSDDDETAPKDTPPLTMMSIALRTI 540

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
             N R++  EI+ A+        ++     +  + P  LS  T+VR ++   FP G  + A
Sbjct: 541  VNHRENKTEILVATTRTWDNVNLEDTTPPN--RPPSTLS--TIVRPIEK--FPPGLEQRA 594

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                S   S       +ERALLN L+  + + D DV+VGHN  G   + LL+R +  +  
Sbjct: 595  KSERSPFQS-----VKAERALLNALLATIQRHDPDVIVGHNFLGNTFEALLYRLKELK-- 647

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYS 741
            +  WS+IGR +R       KG  I  +G++  ++   AGRL+ D +   ++ ++   ++S
Sbjct: 648  ADHWSRIGRFRR-------KGFQISKAGSNHRLL---AGRLVADLSSDAAKGMITSTTWS 697

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQ-TLES---LMELIEYGETDAWLSMELMFHLSVLP 797
            LT++  T L   R+++ P D    F  TL+S   L++ I   E D +  + +   + +LP
Sbjct: 698  LTEMVATHLETTREDIDPEDTHTYFDYTLDSPDKLIQFIRLAEIDTYFQLAIAARVQLLP 757

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LT+QLTN++GN W  TL G RA R E++LLH F   KY+ PDK    K TK+        
Sbjct: 758  LTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHKLKYVCPDK--TFKNTKI-------- 807

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                   +  NED   + + S   H++GK    YAGGLV EPK+GL+D YIL++DFNSLY
Sbjct: 808  -------KFINEDGE-EQEVSAG-HKRGK--AKYAGGLVFEPKRGLWDTYILVMDFNSLY 856

Query: 918  PSIIQEYNICFTTVERSP-----DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK- 970
            PSIIQEYNI FTTVER       +  +P +PS     GVLP ++  LVQRRR VK  MK 
Sbjct: 857  PSIIQEYNIDFTTVEREDCEGEDEEKIPDVPSRDVAQGVLPRIIATLVQRRRQVKGLMKD 916

Query: 971  -TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
             +A   K+QQ DI+QQALKLTANSMYGCLGF+ SRF ++PLA L T +GREIL  T +L 
Sbjct: 917  KSAGAAKLQQWDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFKGREILTHTRELA 976

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            + +L+L+V+YGDTDS+ ++S +    +A  IA +  + VN++YK LEIDLD  ++R+LLL
Sbjct: 977  E-SLSLDVVYGDTDSVFVNSNVVSYPEAVKIANEFKKLVNERYKLLEIDLDATFERVLLL 1035

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYAAVK+   D    +  E KGLDM RR++S LSK+     L +ILS    E VVE 
Sbjct: 1036 NKKKYAAVKI---DEAGKKSTEIKGLDMKRREFSKLSKDASSSVLKEILSGDDTEKVVEK 1092

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            IH  L+++ E +RSG V L+ ++I K     PE YPD K+QPHVQVALR+K  G  T   
Sbjct: 1093 IHEYLIQLGEIVRSGAVPLDDFIIYKN----PEDYPDKKSQPHVQVALRMKAKG--TAVR 1146

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            A D +PYI+C      S  S   A +A HPD+L++   +  ID D Y   Q+   + RLC
Sbjct: 1147 AHDVIPYILCLGPDGKSAKSAQ-ADKAFHPDDLRRQGSELKIDYDLYLDSQVLQPILRLC 1205

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS 1329
             SIEGT   RLA+CLGLDP+++ S+ ++ +      +L   + DEER+R  E L L CPS
Sbjct: 1206 ESIEGTERSRLAECLGLDPTRYVSQ-TQNVHERQFFTLESQISDEERFRDAEKLSLKCPS 1264

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKR 1389
            C+ TF+   +  ++ ++ S +             + CP C     A  I    +A QV+ 
Sbjct: 1265 CAVTFEFEGIEQNLKINQSGQAG-----------VACPSC-----ANMIPQASVALQVEL 1308

Query: 1390 QADGFVSMYYKGLMMCDD-ETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKY 1445
                +++ YY G  +CD  + C   T ++++   R +G +  G       RC G +  +Y
Sbjct: 1309 LIRKYIARYYLGWTVCDGPDGCGQRTRNVSVYAKRCLGFSREGG------RCKGSVRLEY 1362

Query: 1446 TEADLYKQLTYFCHLLDTQRGIEK 1469
            ++ +LY QL YF HL D  + ++K
Sbjct: 1363 SDTELYNQLLYFRHLFDGDKLLDK 1386



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 27 ERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYG 86
          +RL ALR   R  G  +      +  IYD V +++Y ++V  R E    FI DDDG GY 
Sbjct: 6  DRLAALREA-RSKGGRLSQWKSSDAEIYDEVTDEQYRSIVGDRLEND-DFIEDDDGSGYV 63

Query: 87 DEGQEE 92
          D G++E
Sbjct: 64 DHGEDE 69


>gi|29251556|gb|AAO73537.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
          Length = 1524

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1251 (35%), Positives = 671/1251 (53%), Gaps = 142/1251 (11%)

Query: 315  EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            E KS ++ QE    ++ DGSL FY +DAH + +GA+   L++FGK+     +   SC + 
Sbjct: 344  EQKSAMDIQEFALPLNQDGSLSFYWIDAHGENNGAD---LFIFGKIYQPEINQYVSCSMK 400

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V  MQR +YA+P           K++K      ++     + ++ V L L+ +I  +   
Sbjct: 401  VNGMQREIYALP-----------KMQKGKARGTLTREEENQLVRGVQLELE-DIRKKRFQ 448

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
              ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  L G++ S 
Sbjct: 449  -GITKWRCKPVTRKYAF-EMLIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQSM 506

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVA 547
            LELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +  
Sbjct: 507  LELFILKRKIKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLNKT 560

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
            ++PP+T      KT    + + NEI   S +  +    + P    +++       FT+VR
Sbjct: 561  DIPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTLVR 613

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
            KLDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ G 
Sbjct: 614  KLDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLCGG 668

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLL 724
              D+LL R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GRLL
Sbjct: 669  IFDLLLARIQILKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GRLL 724

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAW 784
             DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D++
Sbjct: 725  VDTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHSEKDSY 784

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
             +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     
Sbjct: 785  YTFMLMPHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD----- 839

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKKGL 903
            K+   AK      + D   E          NDT         ++   YAGGLV+EPK G 
Sbjct: 840  KKPPNAKDLRRGFMGDEYEE----------NDTKGGGKKGGKRKKAKYAGGLVIEPKAGF 889

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------DGL 938
            YD  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D  
Sbjct: 890  YDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQXKSADNAEGDEVEDVD 949

Query: 939  VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGC 997
            +P    +    VLP +L++LVQ+R+ VK  MK      K+QQL+I+Q+A+KLTANSMYGC
Sbjct: 950  LPDKNVNIKDAVLPXVLRDLVQKRKAVKEKMKNEXDQXKLQQLEIRQKAIKLTANSMYGC 1009

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LGFS+SRF+A  +A LIT+ GRE L  T D+ +N L   V+YG TDSIMI++G + + ++
Sbjct: 1010 LGFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGXTDSIMINTGTNQLQQS 1069

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLD 1116
              +  K+  EVN  YKCLEI++DG +K +LLLKKKKYA ++ +       +VI E KGLD
Sbjct: 1070 LEMGKKLKVEVNCLYKCLEIEIDGXFKSLLLLKKKKYAXLRYEGVGSNEVKVIQEMKGLD 1129

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRR W  LSK +G++ LSQILS +  EDVV +++  L  + E M+S ++ L++++ITK 
Sbjct: 1130 MVRRXWCPLSKSIGNYVLSQILSGKQXEDVVFNLNEYLSDIGEKMKSNRITLDQFIITKQ 1189

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LT+    Y D K QPHV VA RLK  G S      + +PY+I  +   ++ S+  ++ +A
Sbjct: 1190 LTRAISEYSDIKGQPHVAVAQRLKNQGKSEADLVNNFIPYVIGAQAFDTAKSNPQLSDKA 1249

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----Q 1292
             HPDEL    GK  +DID+Y   QI   ++RL   I+G + E +A CLG+DP K+    +
Sbjct: 1250 YHPDELLSSKGKITLDIDWYIXTQILXPITRLIEHIDGINIEFVAQCLGVDPKKYKYHSE 1309

Query: 1293 SKPSETMSSDPSS--SLLFAVGDEE--RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVS 1348
             K ++ +  D  S  + +     E+  ++R    L + CPSC+  +D P +       VS
Sbjct: 1310 KKNTDEIGDDGGSIQNPILQTETEKSLKHRSIAELKVKCPSCTHNYDFPGIYQE-GKDVS 1368

Query: 1349 EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDE 1408
                           L C KC       +I    + N+V       +++YY+G   C + 
Sbjct: 1369 --------------GLICTKC-----NAKIPEKYVMNRVNLFLKQLLALYYQGKYECQEP 1409

Query: 1409 TCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI- 1467
            +CK  T  L             C N   C G++V +Y+E      L Y   L   ++ + 
Sbjct: 1410 SCKSMTRQLLYH--------NKCVNLT-CKGKMVPEYSEHQTNXTLRYLQGLFXIKKHLH 1460

Query: 1468 -----EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                 + +++   IP   E N ++       + V  +  R  Y  V L  I
Sbjct: 1461 EDSKNDSLKVETDIPFYNEYNVLQ-------TKVDELMNRSKYTKVDLGSI 1504



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           M D     +G    +  + S    AL +L+A R GG +  D   Y ++    I++ +  D
Sbjct: 1   MSDNYTTQSGXEIKKIGQKSGVKNALAQLRAAREGGDKRTDQ--YQVEEAKRIFEEIDAD 58

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKK---- 116
           EY+ +  +R+ +   FIV DDG GY D G E       +    D+E + G++  +K    
Sbjct: 59  EYERIXDQRKND--DFIVXDDGXGYRDHGGE-------IWERDDNEEVGGKKKKRKLDPN 109

Query: 117 -----------QRIEKRGKKENNQNVR-KPNPSLTAAAAM 144
                        I K     N+ N++ K  P +TA  +M
Sbjct: 110 EQHITBFMMPASTIRKNKGXGNSSNIQIKQKPKVTAEQSM 149


>gi|326432781|gb|EGD78351.1| hypothetical protein PTSG_09417 [Salpingoeca sp. ATCC 50818]
          Length = 1535

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1157 (38%), Positives = 641/1157 (55%), Gaps = 127/1157 (10%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            L FY LDA+E       G +YLFGKV  ++ S + SCCV V+ ++R ++ +P        
Sbjct: 434  LHFYWLDAYELPFDNKSGAVYLFGKVFVESVSEYVSCCVTVRGLERNLFVLPR------- 486

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL-NVSNYIVSPVKRRYAFGQ 451
               + + DA+ +  +        + V +G   E  + LL+   +S  +  PV+R YAF +
Sbjct: 487  ---EFKVDAQGNDTT--------EKVEMGDVFEEVDTLLSRRGISTRLAKPVERNYAFEE 535

Query: 452  AEIPAGENYVLKINYPFK-DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
              +PA   + LKI YP +    L A +      +   TH+ A            PS    
Sbjct: 536  KGVPANAEF-LKIKYPARLGSSLVAHMHNNVHTT---THTRA------------PSHAPA 579

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
               +  PA   +      + +D PK   + S  +   E PP+TV +++++T  +++   N
Sbjct: 580  HTHARVPA-HTLPVAHTRVEIDDPK---LVSKVQDPPEAPPLTVLSLSMQTRHDRKTHQN 635

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI+S   + C   ++D      +      LSHF+++RKL    FP  F  E T    K G
Sbjct: 636  EILSLVGLVCSNVQLDGKTENIDKN----LSHFSLIRKLQDQPFPFDF--EPTIMQKKRG 689

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
            +       +ERALL+  +  ++  D DV+VGHN+ G  LDVL+HR +   +P   WS+IG
Sbjct: 690  TKRF---PNERALLSFFLTRVFNTDPDVIVGHNLFGMGLDVLMHRLKQHNIPQ--WSRIG 744

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
            RLKR  MP L+ G     + A+      ++GRLL D    SR+L+R+VSY LT L   QL
Sbjct: 745  RLKRKRMPNLQAGLGHRKNLAA--TRDALSGRLLLDVQHSSRELIRQVSYGLTDLVHNQL 802

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
               R E+    + +M+     L++L+++ E DA+ S++LMF L +LPL +Q+TNI+G L 
Sbjct: 803  GMKRTEIEQEQIPRMYGNTADLIQLVDHTERDAYYSLQLMFKLQILPLMKQITNITGGLM 862

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             +TL   R+ R E+LL H F  +KYIVPD    V E    K + +              D
Sbjct: 863  SRTLTRGRSDRNEFLLCHEFHRRKYIVPD----VPERNSGKNKKD-------------SD 905

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
               D   S +  RK    P YAGGLVLEPK+G YD YILLLDFNSLYPSIIQEYN+CFTT
Sbjct: 906  DGGDGKESASSRRK----PKYAGGLVLEPKRGFYDNYILLLDFNSLYPSIIQEYNLCFTT 961

Query: 931  VERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
            V+R        D        +   G+LP +LK L+ +R+ VK  +K  +   ++ + DI+
Sbjct: 962  VKRDHLSDDMEDSFAEIPDETADKGILPRILKTLIAKRKQVKALIKAETNPARLAEYDIR 1021

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGF  SRFYAKP+AELIT +GREIL++TVDL QN +NL+VIYGDTD
Sbjct: 1022 QKALKLTANSMYGCLGFVGSRFYAKPIAELITTKGREILQNTVDLAQNKMNLDVIYGDTD 1081

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK-VQFK 1102
            SIMI++   D  + + I  +V +EVN  Y+ LEID+DG+YK MLLLKKKKYAA+  V+ K
Sbjct: 1082 SIMINTRSRDYKETRQIGHRVKKEVNALYRELEIDIDGVYKTMLLLKKKKYAALTIVENK 1141

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE--DVVESIHNSLMKVQED 1160
            DG      E KGLD+VRRDW  L+  +G+  L++IL++   +   +VE  H  L KV E 
Sbjct: 1142 DGTFRTERETKGLDIVRRDWCGLAHRIGNIILNKILTQEQGQRDKLVEECHEELHKVGES 1201

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
             R G + LE+Y+I K+LTK P  YPDAKNQPHVQVALR++ +G S      DT+PYIIC 
Sbjct: 1202 AREGTIPLEEYIIHKSLTKDPNQYPDAKNQPHVQVALRMRANGKS--IKQHDTIPYIIC- 1258

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
                + GS +   QRA HPD+++K D    +D+DYY   Q+HPVVSR+   IEGT   ++
Sbjct: 1259 ----NDGSELPATQRAYHPDDVRKKDN-LQVDVDYYLKSQVHPVVSRMLEPIEGTDNAQV 1313

Query: 1281 ADCLGLDPSKFQSKPSET-MSSDPSSSLLFAVGDEERYRGCEPLILSCPSCS--STFDCP 1337
            A+CLGLD S F+ +   T +  D S SL   + DEER++   PL + C  C+  STF   
Sbjct: 1314 AECLGLDASSFRRQYEATDLDDDMSFSLSTQLTDEERFKTASPLTVVCRQCNHESTF--- 1370

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG--RISP-GMIANQVKRQADGF 1394
                +    +SE       + +    L+C        AG   + P   + N+V  +A   
Sbjct: 1371 ----AGVFRLSE-------QGDVRLGLQC------ANAGCTAMYPVNYLKNRVSLEARKA 1413

Query: 1395 VSMYYKGLMMCDDETC-KYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
            +  YY   ++C +  C ++T  +  L +      G  C    RC G + + Y+E  LY Q
Sbjct: 1414 IHEYYTCKLVCSEPECPRHTQGTHQLSV-----NGARCLE-KRCQGTMRKLYSERMLYTQ 1467

Query: 1454 LTYFCHLLDTQRGIEKM 1470
            L++F HL +    ++++
Sbjct: 1468 LSFFAHLFNVPHAVQQL 1484


>gi|37681580|gb|AAQ97671.1| DNA polymerase alpha [Paraurostyla weissei]
          Length = 1496

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1243 (36%), Positives = 674/1243 (54%), Gaps = 140/1243 (11%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKN 375
            + L  Q+    ++ DG+L FY +DAHE+ +GA+   LY+FGK+         SC + V  
Sbjct: 337  AALKAQDYPLPLNQDGTLSFYWIDAHEENNGAD---LYIFGKIYQPEVKQYVSCSLKVNG 393

Query: 376  MQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV 435
            MQR +YA+P     +      L K+ E  ++  +    +L D+    K   AN      +
Sbjct: 394  MQREIYALPK---MKGKARGTLTKEEESQQVRSVQL--ELDDIR---KKRFAN------I 439

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL 495
            + +   PV ++YAF +  I  GE+  LK+ Y    P LP++L G  F  L G + S LEL
Sbjct: 440  TKWRCKPVTKKYAF-EMPIQHGEHLFLKMKYDSTMPSLPSNLTGNTFECLFGANQSMLEL 498

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRV-----SWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            F++KRK+KGP W+++        P++V     +WC+ EITVD PK + V+    +  ++P
Sbjct: 499  FIIKRKIKGPCWMTVKN------PKKVIDFPKTWCRQEITVDDPKFVEVTLDDLNRQDLP 552

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T  + + KT    + + NEI  A + C     I+   L +    P     FT++RKLD
Sbjct: 553  PLTSLSFSFKTT-RSQNNTNEI--AMISCLIHNNINQEGLTT----PDKFQSFTLLRKLD 605

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G  +P  F ++      K   + +    +ER ++   + +++ +D D++V HN+ G   D
Sbjct: 606  GKPWPFDFEQKL-----KQKKDSIQWFQNERQMIEIFISKIFLVDPDLVVAHNLCGGMFD 660

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLCDT 727
            +LL R Q+ R+  + WS+IGR +R  +P  +    G +  GS   P  ++C  GRLL DT
Sbjct: 661  LLLSRIQILRI--NHWSRIGRFRRGTIPNKKFDQGGASYGGSQWIPRQVTC--GRLLVDT 716

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            FL +++L+RE +Y LT L K QL K+R++     + + + + E L +L+E+ E D++ + 
Sbjct: 717  FLSAKELIRETNYDLTYLTKVQLKKERQDFDDDLIPQFYLSTERLFQLVEHTEKDSYFTF 776

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ K++I+PDK       
Sbjct: 777  MLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKQFILPDK------- 829

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                + SN     RN   L  ED  F+           ++   YAGGLV+EPK G YD  
Sbjct: 830  ----KASNAKDFKRN---LVGED--FEEAEPTGKKGGKRKKAQYAGGLVIEPKAGFYDNI 880

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSP----DG----------------LVPHLPSSKT 947
            ILLLDFNSLYPSIIQEYN+CFTTV R P    DG                    LP    
Sbjct: 881  ILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEIKNQFKVGEEDEEVEESSLPDKNV 940

Query: 948  T---GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
                 VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCLGF +S
Sbjct: 941  NIKDAVLPNVLRDLVQKRKAVKEKMKNEKDSVKLQQLEIRQKAIKLTANSMYGCLGFGSS 1000

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RF+AK +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + + ++  +  +
Sbjct: 1001 RFHAKAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQLQQSLEMGKR 1060

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDW 1122
            +  EVN+ YKCLEI++DG++K +LLLKKKKYAA+K + F       V E KGLDMVRRDW
Sbjct: 1061 LKVEVNQLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPEVKVVQEMKGLDMVRRDW 1120

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              LSK VG++ L QILS +  E+VV +++  L  + + M++ ++ L++Y+ITK LT+   
Sbjct: 1121 CPLSKTVGNYVLGQILSGKQREEVVLNLNEYLSDIGDKMKTNRITLDQYIITKQLTRQIS 1180

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y D K QPHV VA RLK  G S      + +PY+I       S  +  +A +A HPDE+
Sbjct: 1181 EYSDIKGQPHVMVAQRLKNLGKSEADLVNNFIPYVIGVSPFEPSKQNPQLADKAYHPDEV 1240

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ---SKPSETM 1299
                GK +IDID+Y +QQI P ++RL   I+G   E +A CLG+DP K++    K  +  
Sbjct: 1241 LSSKGKVLIDIDWYITQQILPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSEKKRDDN 1300

Query: 1300 SSDPSSSLLFAVGDEE-----RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP 1354
              D   ++   +   E     + R    L + CP C   FD P V             K 
Sbjct: 1301 VGDDMGNVQNPILQTETEKSLKNRSIAELKVKCPFCQEFFDFPGVYQE---------GKE 1351

Query: 1355 ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTT 1414
             T  N      C KC +     +I    I N++       +++YY G   C + +CK  +
Sbjct: 1352 ITGMN------CIKCQQ-----KIPEQYIMNRINLFVKQLMTLYYSGNYDCLEPSCKAKS 1400

Query: 1415 CSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI----EKM 1470
              L   L+ +      C N   C G++V +Y+E      L Y   L + ++ I    ++M
Sbjct: 1401 RQL---LVNNK-----CINLT-CKGKMVPEYSEHQTNDTLRYLQGLFNVKKCIHESKKQM 1451

Query: 1471 EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            EI   +P  ++  +++         V  +  R +Y  V L  I
Sbjct: 1452 EIK-DVPYFQQYQQLQ-------ERVDEVMNRSSYNKVDLGSI 1486



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 1  MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
          M D Q   +GR   +  + S  + AL +L+A R GG +  D   Y +     I++ +  D
Sbjct: 1  MSDPQHTSSGREIKKVGKKSGVSGALAQLRAAREGGDKRTDQ--YQVDEAKRIFEEIDAD 58

Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          +Y+ +  +RR +   FIVDDDG GY D G E
Sbjct: 59 DYEKIQNQRRND--DFIVDDDGYGYRDFGGE 87


>gi|401885415|gb|EJT49533.1| DNA polymerase alpha catalytic subunit [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1445

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1164 (37%), Positives = 645/1164 (55%), Gaps = 128/1164 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL  + LD  EQ      G ++L GKV  +  + + S C+ +  +QR ++  P  
Sbjct: 328  LEQDGSLRMFWLDFQEQ-----DGVVHLIGKVLDRQSNKYVSACLSINGIQRNLFIKPRA 382

Query: 387  P--LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
               + QT+  M ++K                      + TE  +      +  +    V+
Sbjct: 383  KRMVGQTESDMDVDK--------------------TDVYTEFDSVRSKHGIDEWKCKFVQ 422

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF   +I  GE+  +K+ YPF  P +P    G  F  + GT+++A EL ++KR++ G
Sbjct: 423  RKYAFEDHDIERGESEWMKVTYPFTQPEIPMGTTGATFSHIFGTNTTAFELLVLKRRIMG 482

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTV 562
            P WL+I+   + P+ +  SWCK E TVD PK++   S     A  + PP+T+ +I L+T+
Sbjct: 483  PCWLNIT--GAVPSTKATSWCKIEFTVDDPKNVNPFSDDDETAPKDTPPLTMMSIALRTI 540

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
             N R++  EI+ A+        ++     +  + P  LS  T+VR ++   FP G  + A
Sbjct: 541  VNHRENKTEILVATTRTWDNVNLEDTTPPN--RLPSTLS--TIVRPIEK--FPPGLEQRA 594

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                S   S       +ERALLN L+  + + D DV+VGHN  G   + LL+R +  +  
Sbjct: 595  KSERSPFQS-----VKAERALLNALLATIQRHDPDVIVGHNFLGNTFEALLYRLKELK-- 647

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYS 741
            +  WS+IGR +R       KG  I  +G++  ++   AGRL+ D +   ++ ++   ++S
Sbjct: 648  ADHWSRIGRFRR-------KGFQISKAGSNHRLL---AGRLVADLSSDAAKGMITSTTWS 697

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQ-TLES---LMELIEYGETDAWLSMELMFHLSVLP 797
            LT++  T L   R+++ P D    F  TL+S   L++ I   E D +  + +   + +LP
Sbjct: 698  LTEMVATHLETTREDIDPEDTHTYFDYTLDSPDKLIQFIRLAEIDTYFQLAIAARVQLLP 757

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LT+QLTN++GN W  TL G RA R E++LLH F   KY+ PDK    K TK+        
Sbjct: 758  LTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHKLKYVCPDK--TFKNTKI-------- 807

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                   +  NED   + + S   H++GK    YAGGLV EPK+GL+D YIL++DFNSLY
Sbjct: 808  -------KFINEDGE-EQEVSAG-HKRGK--AKYAGGLVFEPKRGLWDTYILVMDFNSLY 856

Query: 918  PSIIQEYNICFTTVERSP-----DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK- 970
            PSIIQEYNI FTTVER       +  +P +PS     GVLP ++  LVQRRR VK  MK 
Sbjct: 857  PSIIQEYNIDFTTVEREDCEGEDEEKIPDVPSRDVAQGVLPRIIATLVQRRRQVKGLMKD 916

Query: 971  -TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
             +A   K+QQ DI+QQALKLTANSMYGCLGF+ SRF ++PLA L T +GREIL  T +L 
Sbjct: 917  KSAGAAKLQQWDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFKGREILTHTRELA 976

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            + +L+L+V+YGDTDS+ ++S +    +A  IA +  + VN++YK LEIDLD  ++R+LLL
Sbjct: 977  E-SLSLDVVYGDTDSVFVNSNVVSYPEAVKIANEFKKLVNERYKLLEIDLDATFERVLLL 1035

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYAAVK+   D    +  E KGLDM RR++S LSK+     L +ILS    E VVE 
Sbjct: 1036 NKKKYAAVKI---DEAGKKSTEIKGLDMKRREFSKLSKDASSSVLKEILSGDDTEKVVEK 1092

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            IH  L+++ E +RSG V L+ ++I K     PE YPD K+QPHVQVALR+K  G +    
Sbjct: 1093 IHEYLIQLGEIVRSGAVPLDDFIIYKN----PEDYPDKKSQPHVQVALRMKAKGIA--VR 1146

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            A D +PYI+C      S  S   A +A HPD+L++   +  ID D Y   Q+   + RLC
Sbjct: 1147 AHDVIPYILCLGPDGKSAKSAQ-ADKAFHPDDLRRQGSELKIDYDLYLDSQVLQPILRLC 1205

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS 1329
             SIEGT   RLA+CLGLDP+++ S+ ++ +      +L   + DEER+R  E L L CPS
Sbjct: 1206 ESIEGTERSRLAECLGLDPTRYVSQ-TQNVHERQFFTLESQISDEERFRDAEKLSLKCPS 1264

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKR 1389
            C+ TF+   +  ++ ++ S +             + CP C     A  I    +A QV+ 
Sbjct: 1265 CAVTFEFEGIEQNLKINQSGQAG-----------VACPSC-----ANMIPQASVALQVEL 1308

Query: 1390 QADGFVSMYYKGLMMCDD-ETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKY 1445
                +++ YY G  +CD  + C   T ++++   R +G +  G       RC G +  +Y
Sbjct: 1309 LIRKYIARYYLGWTVCDGPDGCGQRTRNVSVYAKRCLGFSREGG------RCKGSVRLEY 1362

Query: 1446 TEADLYKQLTYFCHLLDTQRGIEK 1469
            ++ +LY QL YF HL D  + ++K
Sbjct: 1363 SDTELYNQLLYFRHLFDGDKLLDK 1386



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 27 ERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYG 86
          +RL ALR   R  G  +      +  IYD V +++Y ++V  R E    FI DDDG GY 
Sbjct: 6  DRLAALREA-RSKGGRLSQWKSSDAEIYDEVTDEQYRSIVGDRLEND-DFIEDDDGSGYV 63

Query: 87 DEGQEE 92
          D G++E
Sbjct: 64 DHGEDE 69


>gi|353237576|emb|CCA69546.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1412

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1561 (33%), Positives = 783/1561 (50%), Gaps = 230/1561 (14%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            S R     RL  LR   +    +  +  K +  IYD V+E +Y+A+V R R +   F+ D
Sbjct: 2    SGRTAQSHRLANLRNARQGQSRAKQWKPKGDASIYDEVSERDYEAIV-RGRLDQDDFVED 60

Query: 80   DDGLGYGDEGQEEDWSVAGLPSSSDDE--------------------------SLDGQRS 113
            D   GY D G ++     G  + S+DE                           +   R+
Sbjct: 61   DGVDGYIDHGMDD---FEGDMADSEDEREIKKRQKAAAKATKAKPKPPPPEPAPMSAYRT 117

Query: 114  IKKQRIEKRGKKENNQNV----RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVK 169
            +K + ++    +   Q +     KPNP          ++R  +       +   +D +  
Sbjct: 118  VKSEAVDSEFLENLLQGMVAEPAKPNP----------RKRKGSPSRRETDYTSYRDNQGA 167

Query: 170  ESESVIDEVLAEFAPDEADRERRRRSVSSN-------IKSFVSVNSVKTNSQLVTNSTNS 222
             S+   D    +F+       RRR ++SS+       IK F S N    N    T+  + 
Sbjct: 168  SSDGPDDFPEPKFS-------RRREALSSDDEAFITPIKRFKSENGTGINIHQTTSQVDQ 220

Query: 223  VKENS---DLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDV 279
            ++ +    ++ N++  I   D+  +   +K E ++   L+K          VK+E     
Sbjct: 221  LRMDDPYDEMENDYAPIDLDDI--DGHPVKKE-ESPIALSKLSGNGAHPSAVKNE----- 272

Query: 280  KECKKLNAKISTEKDPLLSATAGW-----KEVSGGNMVLDEGKSGLNCQESEFEVDDDGS 334
                  +AK+ T     L+  A         V GG+  L    +    Q +E    +DGS
Sbjct: 273  ------SAKVQTGPPSWLAVHASLPVAIADTVGGGSSNL----ASTRVQATE----EDGS 318

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNGPLFQTD 392
            L  + LD  E  +      +YL GKV   ST+   S CV ++N++R ++ +P        
Sbjct: 319  LRMFWLDYLEVDA-----KVYLVGKVLDKSTNRYVSACVAIENIERNLFVLPRE------ 367

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               ++E D E + I P     + +DV    + +        ++    +  VKR+YAFG+ 
Sbjct: 368  --RRMEGDYE-TDIQP-----EKRDV----QADFTEARQKFDIKRCAMKWVKRKYAFGEP 415

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
             +P  E   +K+ YPF +P +P++L   N   + GT++SA ELF++KRK+ GP WL I  
Sbjct: 416  GVPTQETLWMKVVYPFSEPAMPSNLTSPNIARIFGTNTSAFELFVIKRKIMGPCWLQIK- 474

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
             ++  A +  SWCK E TV  PKD+   + +  V ++PP+T+ ++ L+TV N +++  EI
Sbjct: 475  -NAEIANKGASWCKLEATVSDPKDVNPLTDNS-VKDMPPLTIMSLTLRTVVNHKENKREI 532

Query: 573  VSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNK-EATDRNSKA 629
            VS +     +  I+  TP+     K+P   +  T +R L+   +P GF    A  R SK 
Sbjct: 533  VSIASRVWEENHIESTTPLD----KQPS--TAVTFIRPLEK--YPKGFESVAAQSRQSK- 583

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
                +   ++ERALLN  +  + + D DV+VGH+  G  LD+LLHR +   + +  WS+I
Sbjct: 584  ----MHAMANERALLNNFLALVQRYDPDVIVGHDFLGVSLDILLHRMK--ELKAEHWSRI 637

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLREVSYSLTQLA 746
             R KR   P + K  T          +  + GRLLCD  L S   + ++   ++SLT++ 
Sbjct: 638  SRFKRKGWPSIGKQGTN---------LRFLNGRLLCD--LASDGAKGMIASTTWSLTEMV 686

Query: 747  KTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
             +QL   R+++ P D    F     T + L+E +++ E DA+L M + +++ +LPLTRQL
Sbjct: 687  ASQLKIQRQDIDPDDTALFFDAETSTAQRLLEFVQHCELDAFLQMAITWNVKLLPLTRQL 746

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            TNI+GN W KTL G RA+R EY+LLH F + KYI PDK    K    AK  +  G     
Sbjct: 747  TNIAGNSWNKTLNGGRAERNEYILLHEFHSLKYICPDKTWGKKAAAAAKVEAEEG----- 801

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                   D    N  S  D         Y GGLV EPK+GL+DK IL++DFNSLYPSIIQ
Sbjct: 802  -------DGAATNTKSKRDK--------YKGGLVFEPKRGLWDKIILVMDFNSLYPSIIQ 846

Query: 923  EYNICFTTVE-----RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI 977
            EYNI FTTVE      S D + P    S   GVLP L+ +LV+RR+ VK +MK+    + 
Sbjct: 847  EYNIDFTTVETGQIEESEDQIPPVPDPSLAQGVLPRLIADLVKRRKAVKGYMKSPGSTEA 906

Query: 978  Q--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            +  Q DI+QQALKLTANSMY                 L   +GREIL +T  L ++ + L
Sbjct: 907  ERKQWDIKQQALKLTANSMYW----------------LPWLRGREILTNTKQLAES-MGL 949

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            +V+YGDTDS+ ++SG  D  +A  IA +  + VN +Y+ LEID+DG+++R+LLL+KKKYA
Sbjct: 950  DVVYGDTDSVFVNSGHLDQTEALKIAHQFKKAVNDRYRLLEIDVDGVFQRLLLLQKKKYA 1009

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            A+KV+  + +P   +E KGLDM RR++S LSK      L  ILS    E VVE IH+ L 
Sbjct: 1010 AIKVE--NNVP--TMEVKGLDMKRREYSALSKNTSRDVLGFILSGEETEVVVEKIHDYLT 1065

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             + +++R+G V L+ Y I K L K PE YPDAK QPHVQVALR+K  G S    AGD +P
Sbjct: 1066 AIGQNVRNGSVQLDDYTIFKRLGKNPEDYPDAKTQPHVQVALRMKAKGQS--AKAGDVIP 1123

Query: 1216 YIIC-CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            YI C  + GTSS ++   A RA HPD++++  G+  ID ++Y SQQI P + RLC  IEG
Sbjct: 1124 YIFCLADDGTSSKTAQ--ADRAFHPDDIRRSGGQLKIDFEHYLSQQILPPIERLCDPIEG 1181

Query: 1275 TSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAV-GDEERYRGCEPLILSCPSCSST 1333
            T   RLA+CLGLDPS++ +  +     D +   L +   D +R++ C+P I++C  C S 
Sbjct: 1182 TDRSRLAECLGLDPSRYHAHSTGGGGEDRAFEALDSQKSDAQRFKSCDPFIVTCRKCKS- 1240

Query: 1334 FDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADG 1393
                          +     P +E N   T     C     A  I+   +  Q++ Q   
Sbjct: 1241 --------------ARAWHPPSSEDNELVTGSGVVCATASCAAPITAASLQTQLEVQIRA 1286

Query: 1394 FVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             +  YY G M+CDDE C   T  + +        G  C     C G +  +Y ++ LY Q
Sbjct: 1287 HIGRYYDGWMVCDDEVCGNRTRMMRV-------YGKRCLR-EGCRGAMNPEYNDSQLYTQ 1338

Query: 1454 LTYFCHLLDTQRGIEKMEISAKIP-LEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
            L ++  L D+Q+ +   + S++   +   + +    + + A  V+R  + C   WV L D
Sbjct: 1339 LLFYSSLFDSQKLLNSSKGSSRQEHITALVGQNADTLLVLAEVVERHLDECGRRWVDLKD 1398

Query: 1513 I 1513
            +
Sbjct: 1399 L 1399


>gi|242009635|ref|XP_002425588.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus
            corporis]
 gi|212509481|gb|EEB12850.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus
            corporis]
          Length = 1474

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1524 (34%), Positives = 786/1524 (51%), Gaps = 206/1524 (13%)

Query: 8    VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            +  R + +  + S R+ ALERLKAL+  GR++   +G   +++N +Y+ V E EY   V 
Sbjct: 6    IESRPKRQKIDKSGRSAALERLKALK--GRKNKCEIG---EVDN-VYEYVDEKEYAKRVR 59

Query: 68   RRREEARGFIVDDDGLGYGDEGQE------ED-----------------WSVAGLPSSSD 104
             R++E     +++ G GY ++G+E      ED                         S  
Sbjct: 60   VRQDEDW---LENPGDGYFEDGREIFDSDDEDDLNSSSSKKSRKLSSLHKKKEKKIKSGS 116

Query: 105  DESLDGQRSIKKQRIEKRG-KKENN------QNVRKPNPSLTAAAAMMGKQRLSAMLTST 157
            +  LD    + K  ++KR    ENN      +++   + S +  + ++  +    ML+S 
Sbjct: 117  NNILD---MVSKMPVKKRNINSENNILNLLEESLNSASNSSSQKSEVLTSKEYLKMLSS- 172

Query: 158  AMFKKSKDEKVKES-ESVIDEVLAEFAPDE-ADRERRRRSVSSNIKSFVS-VNSVKTNSQ 214
                K K+E VK +  S I   L     ++  + E   ++  S++ ++ + V +V+    
Sbjct: 173  ---HKIKNESVKPTFNSAIKTNLVNLPVNKKTNYETSEKNGQSDLTTYSACVQNVQNKET 229

Query: 215  LVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDE 274
            L+ NST S     D I+      N DV     +L   +D+    TK +     KE  K  
Sbjct: 230  LIENSTASNDAYDDSID---FDDNMDVDLGDIDLNVSADD----TKTN-----KENSKPN 277

Query: 275  VNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGS 334
            ++ED  + + LN+    +K+ + S ++ W + +  N+ +      ++  +     + +G 
Sbjct: 278  LDEDCND-EFLNSIPLDDKEEIPSISSEWVDNNTPNINVPLPNISVDKSDLPLGTNKNGE 336

Query: 335  --LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
                F+  DA+E  +    G +YLFGKV  +    + SCCV V+N+ R ++ +P    F 
Sbjct: 337  KVFRFFWWDAYED-ALKQPGIVYLFGKVYYEPKKIYLSCCVAVENIPRRIFLLPRDKKFD 395

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIA--NQLLNLNVSNYIVSPVKRRYA 448
            +       +++ E+ IS       L DV       IA  N+++N       +     +YA
Sbjct: 396  SKT-----QESTETEIS-------LLDVYKEFNENIATPNKIMNFKSRKTTL-----KYA 438

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            F   ++PA   Y L+I YP     LP DL GE F  + GT++S LE+ L+ RK+KGP WL
Sbjct: 439  FELNDVPAESEY-LEIKYPATYAKLPQDLSGETFSRVFGTNTSGLEVLLLDRKIKGPCWL 497

Query: 509  SISKFSSCPAPQRV----SWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
             I        PQ V    SWCK E+    P+D+ +S      A  PP+T+  IN++TV +
Sbjct: 498  EIKN------PQTVNVQCSWCKLEVRCSKPEDVIISDV---FAPPPPLTLMTINIRTVVS 548

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
            K  D NEIV   V+  ++ +ID P        P   SHF  V +     +P   N E   
Sbjct: 549  KNMD-NEIVMIGVIVNNQYRIDKPA-----PNPPFNSHFCTVTRSPSCFWPQ--NIEKCL 600

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
             N K     +    +E++LLN  + +L+ +D DV++GH I GF LD L+ R Q  ++P+ 
Sbjct: 601  GNYKKTE--VAVHQAEKSLLNHFLTKLFTIDPDVIIGHEIFGFTLDTLIQRIQHLKIPN- 657

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             WS+IGRLKR+ +P+  KG+ +  S      ++C  GRL+CD    +R+L+R  SY L+ 
Sbjct: 658  -WSRIGRLKRAILPQF-KGKQMDKS------VTC--GRLVCDVVTSARELIRARSYDLST 707

Query: 745  LAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
            L K  L      R++    +V++ FQ + S++ELI Y   DA   +++++ ++ LPL  Q
Sbjct: 708  LCKQILGIEENSRQDFSSEEVVEKFQKIGSVIELINYTMEDASHILKIVYEINALPLALQ 767

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +T I+GN+  KTL G R++R E+LLLHAF  K Y+VPDK ++ K+ +M            
Sbjct: 768  ITKIAGNVMSKTLSGGRSERNEFLLLHAFTEKNYLVPDK-SFSKKPRM------------ 814

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                        + D      +  K+ P YAGGLV EPKKG YDK+ILL+DFNSLYPSII
Sbjct: 815  ------------NEDEMEASSKNNKKKPQYAGGLVFEPKKGFYDKFILLMDFNSLYPSII 862

Query: 922  QEYNICFTTVERS---PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLK 976
            QEYNICFTTV RS    +  +   P +   G+LP  +K LV+ RR VK  MK+   S   
Sbjct: 863  QEYNICFTTVSRSNGEDENEINCPPDNLPLGILPIEIKKLVETRRDVKQLMKSPNLSPEL 922

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
              Q +I+Q ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL +T ++V+  +N +
Sbjct: 923  YMQHNIRQMALKLTANSMYGCLGFSYSRFYAKPLAALVTSKGREILLNTKNIVEK-MNYD 981

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA 1096
            VIYGDTDS+MI++   +  +   I  K+  E+NK YK +E+D+DG++K MLLLKKKKYAA
Sbjct: 982  VIYGDTDSVMINTNCINYDEVFTIGHKIKDEINKLYKYIELDIDGVFKYMLLLKKKKYAA 1041

Query: 1097 VKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            V +  K  G      E KGLD+VRRDW  LS EVG   L+QILS+ S ED + +I + L 
Sbjct: 1042 VVLTKKPSGELVATKEYKGLDIVRRDWCQLSAEVGRHILNQILSDLSPEDRIGNIKDHLE 1101

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            ++  D+R  +V +    ITK L K PE Y D K+ PH+QVALR+   G       G+TV 
Sbjct: 1102 RITVDLRDRKVPISLLAITKQLAKNPEDYSDIKSLPHLQVALRMNSKG-GKKLRMGNTVS 1160

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+IC       GS++   QRA H DEL K + + +IDI YY  QQIHPV+SRLC  +EG 
Sbjct: 1161 YVIC-----DDGSNLPPLQRAYHVDEL-KSNSQLLIDIKYYLEQQIHPVISRLCEPVEGV 1214

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSD------PSSSLLFAVGDEERYRGCEPLILSCP- 1328
                +A+CLGLDP+ ++    ++M  D        +  +F   D E ++ CE     C  
Sbjct: 1215 DAAFIAECLGLDPTSYRKAIQKSMEKDECENSTAVNDYIFG-NDLEAFKRCEVFSFVCKG 1273

Query: 1329 -SCSST--FDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             +C +    D P   +   +S    PS             C   P            I N
Sbjct: 1274 ENCGTVNYIDSPMRDNVPSLSKCRNPS-------------CNTSPITYLTN------IVN 1314

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN----GRL 1441
            ++  +    +  +Y+  ++C+D  C   T  + ++             +P CN    G +
Sbjct: 1315 ELTIKIKTHIRKFYQNWLICEDPACTNRTQRVPMKFSN---------TFPVCNLCNKGAM 1365

Query: 1442 VRKYTEADLYKQLTYFCHLLDTQR 1465
             R+YT +DLY Q+ Y+ H+   ++
Sbjct: 1366 YREYTSSDLYYQIKYYKHVFTLEK 1389


>gi|6015011|sp|Q94636.1|DPOLA_OXYNO RecName: Full=DNA polymerase alpha catalytic subunit
 gi|405121|gb|AAA21587.1| large subunit of DNA polymerase alpha [Sterkiella nova]
          Length = 1492

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1503 (32%), Positives = 761/1503 (50%), Gaps = 180/1503 (11%)

Query: 53   IYDTVAEDEYDALVARRREEARGFIVDDDGLGY---GDEGQEEDWSV--AGLPSSSDDES 107
            I++ + ++EY+ +   R+ +   FIVDDDG GY   G E  + D  V   G        +
Sbjct: 14   IFEEIDDNEYEKIQDSRKND--DFIVDDDGYGYRDHGGEIWDRDGDVEEVGKKKKKKQNN 71

Query: 108  LDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEK 167
             D   +I    +     K+ + N    NPS      +  +Q    M     +F++   + 
Sbjct: 72   HDPNENIMNYMMPASTLKKKS-NAASTNPSAQQKPKVSVEQSRDIM---NNLFQQLDAKD 127

Query: 168  VKESESV-------IDEVLAEFAPDEADRERRRRSVS----SNIKSFVSVNSVKTNSQLV 216
            V E E V       + E+    A ++ +    R SV+       +       +K  + + 
Sbjct: 128  VDELEDVNEAKNMFVQEMNRPVAFNKEEDFNNRYSVTLESREEQERRRQSEQLKQQANIG 187

Query: 217  TNSTN----SVKENSDLI-----NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV 267
             N ++    S K   D       N++   QN   V +SK    E  N  +    +     
Sbjct: 188  QNQSDVNPFSKKRKLDEFQQVQANSYQSKQNSHSVSKSKPGDHEMANHADGVDLNLLAID 247

Query: 268  KEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAG----------WKEVSGGNMVLDE-- 315
              K+ D    ++    +  + +S+    ++ +T G          W+++   N V ++  
Sbjct: 248  DTKMTDSHPSEIITQNQRASAVSSVNQQIMESTNGKNQLEKNDTEWQQMKEKNAVFNQDL 307

Query: 316  --GKSGL--NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SC 369
                + L  N Q+    +++DG+L FY +DAHE+ +GA+   L++FGK+         SC
Sbjct: 308  RMNDNALMSNQQDYPLPLNEDGTLSFYWIDAHEENNGAD---LFVFGKIYQHEERKFVSC 364

Query: 370  CVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQ 429
             + V  MQR ++ +P     ++   M  E++ E++R   M           G++      
Sbjct: 365  SIKVNGMQRELFVLPKMS-GKSRAAMTTEEEKEQARKVMMELE--------GVRKRFPA- 414

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTH 489
                 ++ +   PV R+YAF +  I  GE+  +KI Y    P LP+ ++G  F  + G +
Sbjct: 415  -----ITKWRCKPVTRKYAF-ELPIQHGEHQFVKIKYDATFPSLPSTVQGNTFECIFGAN 468

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSK 544
             S LE F++KRK++GP W++I        PQ+V+     WCK EI V +PKDI ++    
Sbjct: 469  QSMLESFILKRKIRGPCWMTIRN------PQKVTDFRRTWCKQEILVSNPKDIEITLDDL 522

Query: 545  HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFT 604
            +  E+PP+T     +KT     Q+ NEI   S +       + P       K  +   FT
Sbjct: 523  NKTELPPLTSVTFAIKTC-RSSQNTNEIAMLSCIVNENISQEGP------SKIDVHKSFT 575

Query: 605  VVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
            ++RKLDG   P+ + +   D+      + +     ER L+   + ++Y+LD D++V HN+
Sbjct: 576  LLRKLDGKPMPIEYERAFRDKKD----SFIQFFQHERQLIEAFVAKIYQLDPDLMVAHNL 631

Query: 665  SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK---GRTIFGSGASPGIMSCIAG 721
             G   D+LL R Q+ ++  S WS+IGRLK++++P  +    G    GS   P  ++C  G
Sbjct: 632  CGGMFDLLLARIQMLKI--SHWSRIGRLKKNQIPNKKSDQSGANYGGSQWIPRQVTC--G 687

Query: 722  RLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGET 781
            RLL DTFL +++L+RE +Y LT LAK QL KDR +     +   +  +  L +LI++ E 
Sbjct: 688  RLLVDTFLTAKELIRETNYDLTHLAKVQLQKDRIDFDDDLLPTFYVQMAKLFQLIDHTEK 747

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L+++LM HL V+PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+++PDK 
Sbjct: 748  DAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFVLPDK- 806

Query: 842  TYVKETKMAKQRSNHGVEDRNVEEL-TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
                             +  N ++L  N  A+   +         ++  AYAGGLV+EPK
Sbjct: 807  -----------------KQLNAKDLKKNMFADEYEEGDGKTKGGKRKKAAYAGGLVIEPK 849

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGL------------------ 938
             G YD  ILLLDFNSLYPSIIQEYN+CFTTV R P    DG                   
Sbjct: 850  AGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEMKNQYKKGENGEEEVDI 909

Query: 939  ----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANS 993
                +P    +    VLP +L++LVQ+R+ VK  MKT    +K+ QL+I+Q+A+KLTANS
Sbjct: 910  EEADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMKTEKDHVKLSQLEIRQKAIKLTANS 969

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLGF +SRF+A+ +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + 
Sbjct: 970  MYGCLGFGSSRFHAQAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQ 1029

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVI-E 1111
            + +A  +  ++  EVN  YKCLEI++DG++K +LLLKKKKYAA+K + F      +V+ E
Sbjct: 1030 LQQALEMGKRLKGEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYENFLSPAEVKVVQE 1089

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KGLDMVRRDW  LSK VG + L QILS +  E+VV +++  L  +  +++ G + L ++
Sbjct: 1090 MKGLDMVRRDWCPLSKRVGRYVLDQILSGKQREEVVLNLNEFLSNIGNELKEGTIKLNEF 1149

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ-GTSSGSSV 1230
            +ITK +TK    Y D K QPHV VA RL+  G S      + +PY+IC +  G ++ SS 
Sbjct: 1150 IITKQITKAISDYNDIKGQPHVAVAKRLRDQGKSENQLVNNFIPYVICQQTYGDTTKSST 1209

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
             ++ +A HPDE+    GK  ID D+Y S Q+ P ++RL   IEG   E +A CLGLDP K
Sbjct: 1210 ALSDKAYHPDEVISSRGKVTIDSDWYVSTQLLPPITRLIEHIEGIEVEFVAQCLGLDPKK 1269

Query: 1291 FQSKPSETMSSDPSSSLLFAVG-----DEER---YRGCEPLILSCPSCSSTFDCPAVCSS 1342
            ++    +  + +P+   L         + ER    R    L + CP C+  +  P +   
Sbjct: 1270 YRYHSEKKNTDNPTDDPLIVSNPVLQTETERSLKNRTVAELNIKCPHCAHNYHFPGILV- 1328

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
                    PS   TE      L C KC +     RI    + N++        ++YY G+
Sbjct: 1329 --------PSSNNTELT---GLACVKCNQ-----RIPDAYMLNRLNLFLKQLTALYYLGM 1372

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
              C +  C   T  L L           C     C G++  +Y+E  +   L Y   L +
Sbjct: 1373 KECKEPQCGMKTNQLLL--------NNKCI-VKGCKGKMNSEYSELRINDTLRYLEGLFN 1423

Query: 1463 TQR 1465
             ++
Sbjct: 1424 VKK 1426


>gi|27413232|gb|AAG52947.1| type I DNA polymerase alpha [Urostyla grandis]
          Length = 1356

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1386 (36%), Positives = 743/1386 (53%), Gaps = 139/1386 (10%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            +  + +AL + KA R G  +  +   Y       I++ +  +EYDAL  +R  E   FIV
Sbjct: 16   SDKKQDALAQFKAAREGKEKRTEQ--YKGDEHKKIFEEIDAEEYDALYDQR--ENDDFIV 71

Query: 79   DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
            DDDG+GY ++G E    +     S DD S   ++   K++ ++ G               
Sbjct: 72   DDDGIGYKEKGGE----IWDYEESDDDYSNKEKKVKSKKKKQEGG--------------- 112

Query: 139  TAAAAMMGKQRLSAMLT-STAMFKKSKDEKVKESES--VIDEVLAEFAPDEADRERRRRS 195
              AA M   Q L+     +T +    K  KV E++S  +++E++ +F     D E     
Sbjct: 113  DIAAFMFPTQGLNKRKGGNTGVQGIKKQGKVNEAQSKDLLNELMDDFDNKPID-ELEDIH 171

Query: 196  VSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
             +    +    N   +  Q + N  N + +     N  VQ Q    V++    +    NS
Sbjct: 172  TAHQALNVDDSNFALSKEQQMMNKYNVIIQPQATTNIVVQEQKQIEVKKRSLEEMRQSNS 231

Query: 256  TELTKRDNFVEVKEKVK-DEVNEDVKECKKLNAKISTEKDPL----LSATAGWKEVSGGN 310
            T      N   V ++ K  +   +      L+  +  + D +    ++    W+ +   N
Sbjct: 232  TIKNNGHNESRVSDQNKTQQAMNNTSYQTALDHSVVQQIDQVEQEKMAIDEEWQLIKEQN 291

Query: 311  --MVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMG-TLYLFGKVKAGSTHH 367
              M +    S  +       V+ D  L F+  DAHE+    NMG  ++LFGKV       
Sbjct: 292  EQMKVMTAASSESVDSYPLPVNKDKELAFFWFDAHEE----NMGLDVFLFGKVYQPELKQ 347

Query: 368  --SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTE 425
              SC + V  MQR VYA+P           K+ K+   + ++    +++ Q++AL + +E
Sbjct: 348  YVSCSLKVNGMQRIVYALP-----------KVSKNKSRAELT----KEEEQEMALKIFSE 392

Query: 426  IANQLLNL--NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFC 483
            +     N   ++S +     KR+YAF +  I  GE+ +LKI Y    PPLPA+L G  F 
Sbjct: 393  LDGIRKNKFPSISQWKCKVAKRKYAF-EMPIHHGEHQLLKIKYDSTMPPLPANLTGSTFE 451

Query: 484  SLLGTHSSALELFLVKRKVKGPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSS 542
             L  T  S LEL L+K+K+KGP W+++        A  + SWCK+++ + SPKDI ++  
Sbjct: 452  CLFNTQQSMLELLLLKQKIKGPCWITLKNVQQITQASNKRSWCKHDLVISSPKDIVITVD 511

Query: 543  SKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH 602
              +  E PP+T   + LKT     Q+ NEI   S++  +    D    A+  K+   +  
Sbjct: 512  DLN-KESPPLTALCLALKTC-RSAQNTNEISMISMLIHNNINQDG---ATNDKR---MQS 563

Query: 603  FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
             T++R+L+    P  F   A     K  S++   ++ E+ALL   +  L+ +D D+L+ H
Sbjct: 564  ITLIRRLNTAPLPKDFEGRA---KQKKDSSIFTFQN-EKALLENFISRLHLIDPDMLIAH 619

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS---PGIMSCI 719
            N+ G  L++LL R Q  ++  + WS++GRLKR ++P  +     F S +    P + SC 
Sbjct: 620  NLCGGILELLLARIQWLKL--AHWSRLGRLKRQQIPTKK-----FDSVSQQWVPRLASC- 671

Query: 720  AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYG 779
             GRLL DTFL +++L+RE SY L  LA  QL K R++     +   + T E L +LIE+ 
Sbjct: 672  -GRLLVDTFLSAKELIRETSYDLKHLADVQLKKVREDYDDDLINSFYVTSERLFKLIEHT 730

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
            E D++L+  LM HLSV+PLT+QLT+I+GNLW ++LQ ARA+R E LLLH F  KKY+ PD
Sbjct: 731  ERDSYLTFSLMQHLSVVPLTKQLTSIAGNLWYRSLQNARAERNEMLLLHEFYGKKYLCPD 790

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K  + K+ K               E+  NE+  F N+    +++K K+   Y+GGLV+EP
Sbjct: 791  KAPFSKDKKQ-------------FEDYENENL-FGNEEVKGNNKKRKKA-QYSGGLVIEP 835

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-----------------DGLVPHL 942
            K G YD  ILLLDFNSLYPSIIQEYN+CFTTV R P                 D  V  L
Sbjct: 836  KAGFYDTIILLLDFNSLYPSIIQEYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEV-EL 894

Query: 943  PSSKTT---GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
            P    T    +LP +LKNLVQ+R++VK  +K  +  +K QQL+I+Q+A+KLTANSMYGCL
Sbjct: 895  PDKGNTYKDAILPNVLKNLVQKRKIVKEQLKKETDPVKQQQLEIRQKAIKLTANSMYGCL 954

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            GFS+SRF+AK +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI+SG  +I +A 
Sbjct: 955  GFSSSRFHAKAIAALITKTGRETLLKTKDIAENKLGFNVVYGDTDSIMINSGTTNIEEAL 1014

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVI-ERKGLD 1116
             +  ++ QEVN+ YKCLEI++DGL+K +LLLKKKKYAA+KV+ F       +I E KGLD
Sbjct: 1015 KMGHRLKQEVNQHYKCLEIEIDGLFKSLLLLKKKKYAALKVENFMSPDRKTIIKECKGLD 1074

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            MVRRDW  L+K  GDF L QILS +  ED+V ++   L  + + M++ Q+ L++YVI K 
Sbjct: 1075 MVRRDWCALAKNAGDFVLDQILSGQQREDIVLTLTEHLSNLGQRMKNNQIPLKEYVINKQ 1134

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            +T+    Y D K  PHV VALRLK  G S   +  + +PY+IC EQ   S     ++++A
Sbjct: 1135 ITRALSEYHDTKALPHVAVALRLKNQGKSE--ADLNFIPYVICTEQDKKSQF---LSEKA 1189

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
             HPDE+    GK  +D+D+Y +QQI P++SRL   IEG   + +A C G+DP K++   S
Sbjct: 1190 YHPDEVLTSKGKIQLDVDWYITQQILPIISRLIEHIEGIEADFIAQCFGIDPKKYKYTSS 1249

Query: 1297 ETMS---SDPSSSLLFAVGDEE-----RYRGCEPLILSCPSCSSTFDCPAVCS---SICM 1345
               S   +D ++ +  A+  EE     + R    L + C SC    + P V     +I  
Sbjct: 1250 IQKSNDINDDTAHIKKAILSEETENKLKQRSIAYLKVVCFSCHLEQEFPGVFQKNGTISG 1309

Query: 1346 SVSEKP 1351
             V +KP
Sbjct: 1310 LVCQKP 1315


>gi|58268454|ref|XP_571383.1| DNA  polymerase alpha catalytic subunit [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57227618|gb|AAW44076.1| DNA polymerase alpha catalytic subunit, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1485

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1213 (36%), Positives = 646/1213 (53%), Gaps = 164/1213 (13%)

Query: 313  LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCC 370
            LD   + +   + E  ++ DGSL F+ LD  EQ      G ++L GKV  K    + S C
Sbjct: 361  LDTVSAPVGSTKPENVMEKDGSLRFFWLDHLEQ-----DGIVHLVGKVLDKQTGKYVSAC 415

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
            V V  ++RC+Y  P    F        E D + S           +DV      E  N  
Sbjct: 416  VSVTGIERCLYVKPRAKRFARG----FETDLDVSE----------EDVL----DEFENFR 457

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK---------------DPPLPA 475
              + +  Y    VKR+YAF   ++  GE+  L++ Y F                +P +P 
Sbjct: 458  SQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDRESCVRVYRLVLNKIEPAIPM 517

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK 535
            D  G  F  + GT+++  ELF+V +K+ GPSWL I   +  P  +  SWCK E  V  P 
Sbjct: 518  DSNGATFSHIFGTNTTPFELFVVNQKIMGPSWLEIKDIA--PVEKASSWCKLEFYVTDPS 575

Query: 536  DIRVSSSSKHVA--EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
            ++   S +   A  + PP T+ +I+L+T+ N R++  EI+S S+       I+ P    +
Sbjct: 576  EVNPFSETDPSAPKDTPPFTIMSISLRTIVNHRENKTEILSVSMRTWDNYNIEDPTPPDQ 635

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
             +    L+  T+VR ++   FP G   +A    S+          +ERALLN ++  +Y+
Sbjct: 636  LR--SQLN--TIVRPIER--FPSGLESKARSEKSQ-----FQTVKTERALLNSMLGMIYR 684

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
             D DV+VGHN  G   + LL+R +   + +  WS+IGR +R       KG  +   G++ 
Sbjct: 685  HDPDVIVGHNFLGGGFEALLYRMK--ELKADHWSRIGRFRR-------KGMNVSKMGSNV 735

Query: 714  GIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----T 768
             +M   AGRL+ D +   ++ ++   ++SLT++  T L   R+++ P D    F     +
Sbjct: 736  KLM---AGRLVADLSSDAAKGMISSTTWSLTEMTNTHLKVQREDIDPEDTAGYFDHTATS 792

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             + L++ I   E DA+  M +   + +LPLT+QLTN++GN W  TL G RA R E++LLH
Sbjct: 793  PDRLIKFIRLCEVDAFFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLH 852

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
             F   +Y+ PDK  Y  +T+        G +D   E++                 KG+RG
Sbjct: 853  EFHRLEYVCPDKAPYKAKTRPT------GDDDEVTEDII--------------AMKGQRG 892

Query: 889  PA-YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-----LVPHL 942
             A YAGGLV EPK+GL+DKYI+++DFNSLYPSIIQEYNI FTTVER  D       +P +
Sbjct: 893  KAKYAGGLVFEPKRGLWDKYIIIMDFNSLYPSIIQEYNIDFTTVERDDDENAEEEKIPDV 952

Query: 943  PSSKT-TGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLG 999
            PSS    GVLP ++  LV RRR VK  MK  +A+  K+ Q DI+QQALKLTANSMYGCLG
Sbjct: 953  PSSDVPQGVLPRIIATLVNRRRQVKALMKDKSATPAKLLQYDIKQQALKLTANSMYGCLG 1012

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
            F+ SRF ++PLA L T +GREIL  T +L ++ L L+V+YGDTDS+ ++S +    +A  
Sbjct: 1013 FAGSRFSSRPLAALTTFKGREILTHTRELAES-LQLDVVYGDTDSVFVNSNVTTYPEALK 1071

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
            IA +  + VN++YK LEIDLD +++R+LLL KKKYAAVK+   D       E KGLDM R
Sbjct: 1072 IANEFKKLVNERYKLLEIDLDAVFERILLLNKKKYAAVKI---DEAGERSTEVKGLDMKR 1128

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            R++S +SK+     L +ILS  + E VVE IH  L K+ E +R+ ++ ++ Y+I K L K
Sbjct: 1129 REFSKVSKDASAAILKEILSGEATEVVVEKIHELLTKLGEAVRNNEIPIDDYIIFKRLGK 1188

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
             PE YPD K+QPHVQVALR+KQ G      A D +PYIIC ++    G +   A RA HP
Sbjct: 1189 NPEDYPDKKSQPHVQVALRMKQKG--AAVRAHDVIPYIICLDEHGKGGKTAS-ADRAFHP 1245

Query: 1240 DELKKGDGKWMIDIDYYASQQI-HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
            D+L++   +  ID +YY  QQI HP++ RLC +IEGT   RLA+CLG   ++ Q K   T
Sbjct: 1246 DDLRRQGSELRIDHEYYLDQQILHPIL-RLCETIEGTERARLAECLGT--AEAQEKEFFT 1302

Query: 1299 MSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
              S         + D +R+R  +PL L CPSCS                       ET +
Sbjct: 1303 FDSQ--------ISDNDRFRDADPLNLVCPSCSE----------------------ETVF 1332

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
               +T       +  E   I P  +  Q++ Q    +S YY G M CD E C   T +++
Sbjct: 1333 VGLQT-------DASEVLVIHPASLQLQLENQIRSHISKYYLGWMTCDGEGCGLRTRAMS 1385

Query: 1419 LRLIGDAERGTVCPNYPR--CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
            +        G  C  + +  C G +  +YT+A LY QL Y+  L D ++ +  +  S + 
Sbjct: 1386 V-------YGKRCLGFIKENCWGTMRLEYTDAKLYNQLLYYRSLFDVEKILNAVRGSQR- 1437

Query: 1477 PLEKELNKIRPVV 1489
                  ++IRP+ 
Sbjct: 1438 -----FDEIRPLT 1445


>gi|358053935|dbj|GAA99900.1| hypothetical protein E5Q_06603 [Mixia osmundae IAM 14324]
          Length = 1500

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1235 (36%), Positives = 661/1235 (53%), Gaps = 176/1235 (14%)

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP 384
            FE DD  SL FY LD  E         L L GKV   A  ++ SCC+ + NM R ++A+P
Sbjct: 387  FEKDD--SLHFYWLDYQEPPFPE---PLRLIGKVYDHATQSYVSCCLSIHNMMRNIFALP 441

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV------SNY 438
              P      +  +  D EE+        ++LQ +     T +A++L  L V      + +
Sbjct: 442  KIP------VQAISDDYEETE-------EELQRL-----TNVADELQALAVRSGVKATQF 483

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
                V R+YAF    +P  +   +K  YPF +P +  +  G+ F  L GT +SA E F +
Sbjct: 484  EYKFVNRKYAFEDDSVPREKTQYVKAMYPFTEPII-QETSGQFFSHLFGTRTSAFEHFAL 542

Query: 499  KRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRV---------SSSSKHVA 547
            KRK+KGP WL I  ++ S       +SWCK E+    PKDIR          + S +   
Sbjct: 543  KRKLKGPCWLEIKNAELSDIA----MSWCKLEVICKEPKDIRPLADVEPDLKNGSRERTR 598

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTV 605
            E PP+T+ +++ +T+ N   DV EIVS S+       ID  TP+     K+P   S  T 
Sbjct: 599  ETPPLTIVSVSARTIMNHTLDVKEIVSTSLRIWKDCNIDDVTPIA----KQP--CSVITC 652

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
            VR L G  FP GF  E   RN       +  E +E+ LLN+L+  L++ D D++VGH  +
Sbjct: 653  VRPLTGYSFPAGF--ETACRNQSPKIMTVTGEHAEKWLLNQLLAALHRHDPDIIVGHEFA 710

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
               L+ +L R    ++    +S++GRL++S+ P  ++             +S ++GRLLC
Sbjct: 711  DL-LETILTRLSNLKI--EHFSRLGRLRQSKRPNAKQAH-----------ISLMSGRLLC 756

Query: 726  D-TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGE 780
            D T   ++ ++   ++SLT++ K QL  +R+++ P D    F     T ++L+  + + E
Sbjct: 757  DLTNDSAKSMIASTTWSLTEMCKNQLKVEREDIDPDDTADFFDATATTPDALIRFVRHCE 816

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG-ARAQRVEYLLLHAFRAKKYIVPD 839
             DA+  M + F + VLPLT+QLTN+SGN WG+TL G +R++R EY+LLH F   KYIVPD
Sbjct: 817  ADAYFQMAIAFEVQVLPLTQQLTNLSGNSWGRTLSGGSRSERNEYILLHEFHRLKYIVPD 876

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            KF                     VEE+  +                     Y GG V EP
Sbjct: 877  KFR------------------GRVEEVKEK---------------------YMGGKVFEP 897

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD-------GLVPHLPSSK-TTGVL 951
            KKGL+DKYI+++DFNSLYPSIIQEYNI FTTV+RS D         +P LPSS    GVL
Sbjct: 898  KKGLWDKYIIVMDFNSLYPSIIQEYNIDFTTVDRSKDDGAKAGADSIPDLPSSDLEQGVL 957

Query: 952  PELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            P+L+  LVQRR++VKT MK    +  +  Q DI+Q+ALKLTANSMYGCLGF+ SRFYA+ 
Sbjct: 958  PKLIATLVQRRQLVKTLMKDRDVTPARYMQYDIRQKALKLTANSMYGCLGFAGSRFYARA 1017

Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            LA L T +GREIL +T +L +  + L+VIYGDTDS+MI++ + D+ +A  IA    + +N
Sbjct: 1018 LAALTTYKGREILTNTKELAE-GIQLDVIYGDTDSVMINTNVTDLKEALLIASNFKKLIN 1076

Query: 1070 KKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            ++Y+ LEID D ++ RMLLL+KKKYAA+KV+    G     +E KGLD  RR++  L+KE
Sbjct: 1077 QRYRLLEIDTDAVFTRMLLLQKKKYAALKVEDMTTGA--TALEVKGLDQRRREFCKLAKE 1134

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V +  L  I+S  S E VVE +H  L  V +++R+G   LE ++I K L+K  +AY + K
Sbjct: 1135 VSENTLRFIMSGESTEVVVEKLHEYLAAVSDEVRAGLKPLEDFIINKQLSKELDAYTE-K 1193

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
            N PHV VA R K  GYS    A D V YI C  +  SS  +   A RARHPD+L++ +GK
Sbjct: 1194 NMPHVVVARRQKAKGYS--AKAKDVVAYIFCLGEDGSSAKTAQ-ADRARHPDDLRQKEGK 1250

Query: 1249 --WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS-- 1304
              + +D  YY   Q+ PVV RLC  IEG   +RLA CLG+D      + +  M+ D    
Sbjct: 1251 EAYKVDYGYYLFGQVLPVVERLCEHIEGADRQRLAQCLGID---LAQQKAHGMTDDVERE 1307

Query: 1305 -SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRT 1363
              +L   + D +R+R  +PL++ C  CS+      + S+    +S+              
Sbjct: 1308 FHTLESQISDADRFRDADPLVMRCLYCSTEAPFGGLASNGNGQISDAGL----------- 1356

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
                 C  +  A  + P  IA Q++ Q    +S +Y+G ++CDD+ C   T  L      
Sbjct: 1357 ----VCVNDACASVLPPASIAIQLELQVRARISQFYEGWLVCDDQECGNRTRML------ 1406

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN 1483
             A  G  C     C G +  +YT++ LY QL YF  L D +R       S   PL+K+  
Sbjct: 1407 -AMYGKRCLQLG-CRGIMHNEYTDSRLYNQLLYFDTLFDGERA------SRNAPLKKDAI 1458

Query: 1484 KI--RPVVALAAS---TVQRIRERCAYGWVKLNDI 1513
             +  R    L A    T+ R  ++C   +V ++++
Sbjct: 1459 MVLARSNAVLFAELRKTLARYMDKCGRRYVNMSNL 1493



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 68/152 (44%), Gaps = 49/152 (32%)

Query: 16  GAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEAR- 74
           GA A A+  ALERLKA R G +R  D +      +  IYD V EDEY     R+  +AR 
Sbjct: 4   GARA-AQQSALERLKATRAGQKREFDFLQTK---DAKIYDEVDEDEY-----RKDYKARL 54

Query: 75  ---GFIVDD--------DGL---------------------GYGDEGQEE-DWSVAGLPS 101
               FI +D        DGL                     GY D GQ+E D SVA    
Sbjct: 55  IQEDFIEEDSDDEGRMRDGLPPSDDAPLAPKSRKGRTRQTSGYVDMGQDEWDHSVA---- 110

Query: 102 SSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
            SDDES D  ++ KK ++   G   N + V+K
Sbjct: 111 RSDDESEDEAKASKKAKVN--GTAMNGKPVKK 140


>gi|348512198|ref|XP_003443630.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Oreochromis
            niloticus]
          Length = 1430

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1229 (38%), Positives = 665/1229 (54%), Gaps = 151/1229 (12%)

Query: 284  KLNAKISTEKDPLLSATAG--WKEVSGGNMVLDEGKSGLNCQESEFEVDD---------D 332
            K+ AK   +   L+S+  G  W +         E + G N   +E +VD          D
Sbjct: 260  KVEAKAEPQDPVLMSSRIGSSWGQ---------EEEGGANDAPAEVQVDSSQLPLVEGPD 310

Query: 333  GS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPL 388
            G     FY LDA E       G +YLFGKV  ++  +H SCCV VKN++R +Y +P    
Sbjct: 311  GEQVFRFYWLDAFEDPYN-QPGVVYLFGKVWIESAKSHVSCCVSVKNIERTMYLLPRE-- 367

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
                   K      E   +P+      Q+       E++ +     +  +    V++ YA
Sbjct: 368  ------YKTNPRTGEVSNTPVGMMDVYQEF-----NELSEKF---KIMKFKSKKVEKNYA 413

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            F   ++P    Y L++ Y  + P LP+DLKG  F  + GT++S LE FL+ RK+KGP WL
Sbjct: 414  FEIPDVPTQCEY-LEVRYSAEFPSLPSDLKGATFSHIFGTNTSRLEHFLLSRKIKGPCWL 472

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV-----PPVTVTAINLKTVF 563
             I   S     Q VSWCK E          +S  S  ++ V     PP+TV +I+LKTV 
Sbjct: 473  DIK--SPQLMNQPVSWCKVEA---------LSLRSDLISVVKDLPPPPLTVMSISLKTVQ 521

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
            N +   NEIVS + +  ++  +D         +P   +HF V+ +    IFP  F +   
Sbjct: 522  NPKTHQNEIVSLAALIHYRFHMDKAP-----PQPPYQTHFCVISRPADCIFPYDFKEAVR 576

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
             +N K         S+ER LL   + +++K+D DVLVGH+I GFDL+VLL R  VC+VP 
Sbjct: 577  KKNGKVE-----IASTERTLLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKVPH 631

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
              WSKIGRL+RS MPKL  GR+ F    +    +C  GRL+CD  + +++L+R  SY LT
Sbjct: 632  --WSKIGRLRRSNMPKL-GGRSAFAEKNA----TC--GRLVCDVEISAKELIRCKSYHLT 682

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +L    L  +R  V   D+  ++     L+ L+E   TDA L +++M  L+VLPL  Q+T
Sbjct: 683  ELTAQVLKTERITVPQEDIKNLYSDSPHLLYLLELTWTDAKLILQIMCELNVLPLALQIT 742

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            NI+GN+  +TL G R++R E+LLLHAF  K YIVPDK ++    K A+  +  G +D + 
Sbjct: 743  NIAGNVMSRTLMGGRSERNEFLLLHAFHEKDYIVPDKPSF----KKAQLETAEGEDDVDA 798

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
             +   +                    AYAGGLVL+PK G YDK++LLLDFNSLYPSIIQE
Sbjct: 799  GKGKRKKKA-----------------AYAGGLVLDPKVGFYDKFVLLLDFNSLYPSIIQE 841

Query: 924  YNICFTTVERSPDG------------LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
            +NICFTTV+R                +      +   G+LP+ ++ LV+RR+ VK  MK 
Sbjct: 842  FNICFTTVQREAQNSQKKKEEDEPEEIPEIPDPNLEMGILPKEIRKLVERRKQVKGLMKQ 901

Query: 972  AS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
                  L +Q  DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T D+
Sbjct: 902  QDINPDLYLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKDM 960

Query: 1029 VQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLL 1088
            VQ  +NLEVIYGDTDSIMI++    + +   +  KV  EVNK YK LEID+DG++K +LL
Sbjct: 961  VQK-MNLEVIYGDTDSIMINTNSKCLDEVFKLGNKVKAEVNKLYKLLEIDIDGVFKSLLL 1019

Query: 1089 LKKKKYAAVKVQFKDGMPYEV-IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            LKKKKYAA+ V+      + V  E KGLD+VRRDW  L+KE G++ + QILS++S + +V
Sbjct: 1020 LKKKKYAALVVEPNGEGRFSVKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQSRDVIV 1079

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E+I   L+++ E + SG + L +Y I K LTK P+ YPD K+ PHV VAL +   G    
Sbjct: 1080 ENIQKHLVELGEKVASGDIPLNQYEIHKALTKDPQDYPDKKSLPHVHVALWINSQG-GRR 1138

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
              AGDT+ Y+IC       GS++  +QRA   ++L+K +    +D  YY +QQIHPVVSR
Sbjct: 1139 VKAGDTISYLIC-----KDGSNLPASQRAYALEQLQKQEN-LTLDTQYYLAQQIHPVVSR 1192

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAV--GDEERYRGCEPLIL 1325
            +C  IEG     +A  LGLDPS+F+++       +    L   V   DEERY+ CE    
Sbjct: 1193 ICDPIEGIDGVLVASWLGLDPSQFRAQQQFQREEEADGLLGVPVQLTDEERYKDCERFTF 1252

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG---- 1381
            +CP C +      V       V  +PS           +RC   P     G  SP     
Sbjct: 1253 TCPQCGTDNIYDGVFEGAGAKV--EPS----------LMRCCHIP----CGG-SPADYIV 1295

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRL 1441
             I+N++       +  YY G +MC+D+ C+  T  L    I  +  G +CP   R   R 
Sbjct: 1296 NISNKLVLDIRRHIKRYYAGWLMCEDQACQNRTRRLP---IAFSRHGPICPACSRATLR- 1351

Query: 1442 VRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
              +Y+E  LY QL ++  + D +  + K+
Sbjct: 1352 -PEYSEKALYNQLCFYRFIFDWEYAVTKV 1379


>gi|444706975|gb|ELW48287.1| DNA polymerase alpha catalytic subunit [Tupaia chinensis]
          Length = 1414

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1557 (33%), Positives = 789/1557 (50%), Gaps = 221/1557 (14%)

Query: 8    VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            VA R R        R EALERLK       ++G+   Y ++    +Y+ V E++Y  LV 
Sbjct: 20   VASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTSVYEEVDEEQYSKLVQ 74

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN 127
             R+++    IVDDDG+GY ++G+E       L   + D S  G+ S K +  +KR  K+ 
Sbjct: 75   ARQDDDW--IVDDDGIGYQEDGRE--IFDDDLEDDALDTSGKGKDSSKVRSKDKRNVKK- 129

Query: 128  NQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEA 187
               V KPN   +   A  GK+      T+      SKD+ + +    ++   ++  P   
Sbjct: 130  -PAVTKPNNIKSMFIASAGKK------TADKAIDLSKDDLLGDILQDLNTGASQVTPPPV 182

Query: 188  DRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLINNFVQIQN 238
             R  ++RS+ +++  F SV++ K      T      KE          ++     VQ ++
Sbjct: 183  IR-LKKRSIGASLNPF-SVHTPKAVPSGKTAPPVFRKEPPLTPIPVKRAEFSGELVQTEH 240

Query: 239  CDVVEESKELKWESDNSTELTKRD--NFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPL 296
             +  +ES  +++E  +  E    +  +   V  K  D+ NE  +  K        E DP 
Sbjct: 241  IEDEQESGMMEFEDGDFDEPMDAEEVDMEPVAAKTWDQENEPAEGVKH-------EADPG 293

Query: 297  LSATAGWKEVSGGNMVLDEGK---SGLNCQESEFE---------VDDDGSLPFYILDAHE 344
               T+  +         D G+   S  + QE + +          D D    FY LDA+E
Sbjct: 294  KGTTSYLESFLPDVSCWDIGQEDDSNFSTQEVKVDSSHLPLVKGTDGDQVFQFYWLDAYE 353

Query: 345  QLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
                   G  ++FGKV+  +  TH SCCV+VKN++R +Y +P          MK++ +  
Sbjct: 354  DQYN-QPGIAFVFGKVRIESAKTHVSCCVMVKNIERTLYFLPRE--------MKIDLNTG 404

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVL 462
            +   +P+     ++DV      +IA +   +   + IV   ++ YAF   ++P    Y L
Sbjct: 405  KETGTPVT----MKDVYDEFDEKIATKYKIMKFKSKIV---EKNYAFEIPDVPEKSEY-L 456

Query: 463  KINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV 522
            ++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +        P  +
Sbjct: 457  EVRYSAEGPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNPP--I 514

Query: 523  SWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHK 582
            SWCK E     P  + V    K V   PP+ V + ++KT+ N +   NE+++   +  H 
Sbjct: 515  SWCKVEAIALKPDLVNVI---KDVGP-PPLVVMSFSMKTMQNAKYHQNEVIAVVALVHHS 570

Query: 583  AKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERA 642
              +D         +P   SHF VV KL   IFP  F +    +N K         ++ER 
Sbjct: 571  FALDKAA-----PQPPFQSHFCVVSKLKDCIFPYAFKELVEKKNVKVE-----VAATERT 620

Query: 643  LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK 702
            LL   + +++K+D DV+VG   SGF                                   
Sbjct: 621  LLGFFLAKVHKIDPDVIVGR--SGF----------------------------------- 643

Query: 703  GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
                       G  +   GR++CD  + +++L+R  SY L++L +  L  +R  +   ++
Sbjct: 644  -----------GERNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTERDVIPMENI 692

Query: 763  LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
              M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R 
Sbjct: 693  QNMYSEPSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERN 752

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            E+LLLHAF    YIVPDK  + K                  ++L +ED   D DT  N +
Sbjct: 753  EFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDT--NKY 794

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--------S 934
            +KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R        +
Sbjct: 795  KKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVSSEAQKVT 854

Query: 935  PDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALK 988
             DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   + Q DI+Q+ALK
Sbjct: 855  EDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALK 914

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            LTANSMYGCLGFS SRFYAKPLA L+T +GREI            NLEVIYGDTDSIMI+
Sbjct: 915  LTANSMYGCLGFSYSRFYAKPLAALVTYKGREI------------NLEVIYGDTDSIMIN 962

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPY 1107
            +   D+ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG  +
Sbjct: 963  TNSTDLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYF 1022

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
               E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+ + E++ +G V 
Sbjct: 1023 TKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIHIGENVLNGSVP 1082

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + ++ I K LTK P+ YPD K+ PHV VAL +   G       GDTV Y+IC       G
Sbjct: 1083 VSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKVGDTVSYVIC-----QDG 1136

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
            S++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LGLD
Sbjct: 1137 SNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLD 1195

Query: 1288 PSKF------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
            P++F      + + ++T+   P+      + DEE+Y+ CE L   CP+C +      V  
Sbjct: 1196 PTQFRVHHYHKDEENDTVLGGPAQ-----LTDEEKYKDCEKLKCPCPACGTENIYDNVLD 1250

Query: 1342 SICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
             +           + E + +R   + C   P      +++  +I + ++R     +  YY
Sbjct: 1251 GLGT---------DMEPSLYRCSNIDCKASPLAFMV-QLNNKLIVD-IRR----CIKKYY 1295

Query: 1400 KGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFC 1458
             G ++C++ TC+  T  L L     +  G +C   P C    +R +Y++  LY QL ++ 
Sbjct: 1296 DGWLICEEPTCRNRTRHLPLHF---SRNGPLC---PACMKATLRPEYSDKSLYTQLCFYR 1349

Query: 1459 HLLDTQRGIEKMEISAKIPLEKE--LNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            ++ D    +EK+    K  L+K+  L K+        +TV+    R  Y  V L+ +
Sbjct: 1350 YIFDVDYALEKLTDHEKDKLKKQFFLPKVCQDYKKLKNTVELFLSRSGYSEVNLSKL 1406


>gi|219114300|ref|XP_002176321.1| catalytic subunit p180 [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402724|gb|EEC42713.1| catalytic subunit p180 [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1147

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1182 (37%), Positives = 643/1182 (54%), Gaps = 148/1182 (12%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVK-------AGSTHHSCCVVVKNMQRCVYAI 383
            D+  L  Y  D  EQ +G     L+LFGKV+       A  +  S CVVV++  R +Y +
Sbjct: 1    DEPYLDLYWTDLCEQRNG----DLWLFGKVRQPTTTTEASPSFVSACVVVQHNMRNLYVL 56

Query: 384  PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV-SNYIVSP 442
            P      +D       DA+E  + P      LQ V   +K+ +   +L     +++   P
Sbjct: 57   PRQTASGSD-------DAKED-VEP-----DLQAVHGEVKSLLQTHVLPKTAGTSWASKP 103

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK------GENFCSLLGTHSSALELF 496
            V+  YAF    +P      L++ Y  K P LPAD+        +N   +    +S  E F
Sbjct: 104  VQLTYAFDDPTVPRSATTYLQVLYDAKYPALPADVAHPAGSVSDNIARIFNAQASITETF 163

Query: 497  LVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTA 556
            LV+R+++GPSWL +    +  AP  VSWC  E+ +DSP  +    + +H    PP+T  A
Sbjct: 164  LVQRRIQGPSWLRLRAPRATTAP--VSWCALEVILDSPDHV-APLAQQHATPPPPLTAVA 220

Query: 557  INLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL--DGG-- 612
            + L+T  + +  V+EIV+ SV C  + +++    A   K        +++R +  D G  
Sbjct: 221  LKLQTWVHPKTHVSEIVAVSVTCHDRIQLEGSSDAQHTK-----FQLSLIRPIPTDAGAV 275

Query: 613  -IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
              FP   +  A  +N       L  +++ERALL+ L+  L   D DV++GHN  G+DLDV
Sbjct: 276  ATFPRDLDA-AIQQNMPN----LRRQANERALLSCLLATLGAWDPDVVIGHNAWGYDLDV 330

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            LL R    +VP  +WS++GR +R+  P        FG+     I   +AGRL+CDT+L +
Sbjct: 331  LLTRCAALKVP--VWSRLGRRRRTGPPPK------FGARKDYAIAQALAGRLVCDTYLSA 382

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            ++LLRE +YSLT LA TQL   R+E+ P D+ + FQ+ +++++L      DA L   L  
Sbjct: 383  KELLRETTYSLTNLAATQLKTKRQEIEPADIPQWFQSSKTIVQLALSTLFDAQLIQTLAL 442

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L VLPL+ QLT ++GNLW  TL+  RA+R EYLLLH F   + + P+K   +K+   +K
Sbjct: 443  KLQVLPLSHQLTCVAGNLWSHTLKSNRAERTEYLLLHEFHRLQTLPPEKHRALKDEGGSK 502

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
             +                                     YAGGLVLEPKKGLYD YILLL
Sbjct: 503  AK-------------------------------------YAGGLVLEPKKGLYDSYILLL 525

Query: 912  DFNSLYPSIIQEYNICFTTVER-----SPDGLVPHLPSSKTT-GVLPELLKNLVQRRRMV 965
            DFNSLYPSIIQEYN+CFTT++      + D ++P LP ++   GVLP ++++LV+RRR V
Sbjct: 526  DFNSLYPSIIQEYNLCFTTLDWAGLAGTEDNVLPDLPDTEADRGVLPRVIQSLVERRRTV 585

Query: 966  KTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K+  + ++ ++LDI+Q+ALKLTANSMYGCLGFSNSRF+A+P+A LIT  GREIL+ 
Sbjct: 586  KKLLKSETNAVRKEELDIRQKALKLTANSMYGCLGFSNSRFFAQPIAALITSMGREILQR 645

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGI---DDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            TVD+ Q  + L+VIYGDTDSIMI++ I   +D+ K K +  +V +EVN+ Y+ LE+++DG
Sbjct: 646  TVDIAQQKVGLDVIYGDTDSIMINTRINDENDLPKVKELGERVKKEVNRLYRTLELEIDG 705

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEV---IERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            +++ MLLLKKKKYAA  V+  +G   EV    E KGLD+VRRDW + SK+ G +   QIL
Sbjct: 706  IFRSMLLLKKKKYAAKTVE--EGPNGEVKYGQELKGLDLVRRDWCIQSKDTGRYVTEQIL 763

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            S +  + V+E+IH+ L ++   MR+G + LEKY ITK L+K P  YPD K+QPHVQVA+ 
Sbjct: 764  SGQESDIVIENIHSHLEELATKMRAGNLPLEKYTITKGLSKHPNEYPDGKSQPHVQVAMV 823

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSS----GSSVGIAQRARHPDELKKGDGKWMIDID 1254
            + ++      + GD +PYII   +   +      S   A+RARHP+E+ + +G    D++
Sbjct: 824  MLKNNRPV--NTGDHIPYIITVSEEAEAEDKKPKSSSSAERARHPEEILRSNGALKPDVE 881

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK--------PSETMSSDPSSS 1306
            +Y +QQI P V+RLC  IEG S + LA+ LGLD S++             E +   P+SS
Sbjct: 882  WYLTQQILPPVARLCEPIEGMSQQVLAEKLGLDASRYNHAVRTSGDIDADELIDYTPASS 941

Query: 1307 LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
            L     D ER++  E   L C  C      P V   +  S +          N    L C
Sbjct: 942  L----SDTERFKEVEKFYLHCYGCGVESQFPGVYHVVTNSQT-------GNQNTVSGLHC 990

Query: 1367 --PKCPEEVEAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR 1420
              P C   +  G  +       I+N +       +  YY   + CD+  C   T  L++ 
Sbjct: 991  TNPDCLRPMFWGHATQFECFARISNNISIWTQDVMRRYYSSTIRCDEPGCSLETRQLSV- 1049

Query: 1421 LIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
                   G VC     CNG++   ++E  +Y  L Y   L +
Sbjct: 1050 ------VGGVCLRR-GCNGKMCSVFSERSVYTHLKYMESLFN 1084


>gi|198422811|ref|XP_002123526.1| PREDICTED: similar to DNA polymerase alpha catalytic subunit, partial
            [Ciona intestinalis]
          Length = 1375

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1157 (38%), Positives = 641/1157 (55%), Gaps = 127/1157 (10%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY L+A+E       G +YLFGKV  ++   H SCC++V+N++R ++ +P      T E 
Sbjct: 271  FYWLEAYED-QFKQPGVVYLFGKVYIESAKGHVSCCIIVRNVERKIFVLPRSKNRVTGE- 328

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
                       ++P       +DV       +A    N  +  Y    ++++Y FG+ +I
Sbjct: 329  ----------DVTP-------EDVYREFDAHVAT---NYRIMKYKTKVLEKKYVFGERDI 368

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L+I Y     PLP+D+ G+ F  + GT+ S LE  L+ RK+KGP WL I +  
Sbjct: 369  PHEAQY-LEITYSADHRPLPSDISGDTFKCVFGTNQSPLEALLIDRKMKGPCWLDIHE-- 425

Query: 515  SCPAPQ----RVSWCKYEITVDSPKDIRVSSSSKHVAEV---PPVTVTAINLKTVFNKRQ 567
                PQ     VSWCK E+ V        S+S+ HV E    PP+T+ ++ +KT+ N   
Sbjct: 426  ----PQIHTSNVSWCKVEVNV-------TSTSTIHVIETMDPPPLTILSLAIKTLPNIST 474

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEI+  + +  H + I    +     KP   S F  + K    IFP  F     D   
Sbjct: 475  HQNEIIGIAGLV-HTSFI----INKSAPKPSFQSSFFGLSKPSDCIFPYDFR----DAVK 525

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            + G NV     +ER+LL+  ++++ K+D D+++GH++  FDLDV+LHR   C+V  + WS
Sbjct: 526  RRGLNVDIL-GTERSLLSWFLVKMLKIDPDIVIGHDVMNFDLDVMLHRITACKV--AHWS 582

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            +IGRL++  +PK   G    G  +   + S   GR LCD  + +++L+R  SY L  LA+
Sbjct: 583  RIGRLRKLNIPKTMGG----GKFSDRAVAS---GRSLCDVKISAKELIRCRSYDLGTLAE 635

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              L++ RK++    +  MF T +SL+ L+E+   DA LS++  + L+ LPL  Q+TNI+G
Sbjct: 636  QVLHRQRKDLPTEQIKNMFLTSDSLLWLVEHTLLDANLSLDCCYELNALPLALQITNIAG 695

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  +TL G R++R E+LLLHAF  + +I PD        K+ + + N  V    V + T
Sbjct: 696  NVLSRTLMGGRSERNEFLLLHAFHERGFIPPD--------KIKRSKDNLLVRHPGVSKPT 747

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +E  +           + ++  AY GGLVLEPK+G YDK+ILLLDFNSLYPSIIQE+NIC
Sbjct: 748  SEATS-----------RPRKKAAYEGGLVLEPKRGFYDKFILLLDFNSLYPSIIQEFNIC 796

Query: 928  FTTVERSP--------DGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKIQ 978
            FTT++  P        +  +P +P +    GVLP  ++ LVQRRR VK  MKT +  K Q
Sbjct: 797  FTTLDLHPPTDADNDFESYIPDVPETGLEPGVLPTEIRKLVQRRRQVKQLMKTVTISKEQ 856

Query: 979  --QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
              Q DI+Q+ALKLTANSMYGCLGFSNSRFYAKPLA L+T+QGREIL  T +LV+  + LE
Sbjct: 857  YTQYDIRQKALKLTANSMYGCLGFSNSRFYAKPLAALVTRQGREILLHTKELVE-KMGLE 915

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA 1096
            VIYGDTDSIMI++   D+  A  +  +V  EVNK Y+ LEID+DG+YK +LLLKKKKYAA
Sbjct: 916  VIYGDTDSIMINTNSTDLDNAFKLGNQVKSEVNKLYRLLEIDIDGVYKSLLLLKKKKYAA 975

Query: 1097 VKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            + VQ   DG    V E KGLD+VRRDW  L+K  G+F +++ILS+   E +VE IH +L 
Sbjct: 976  LSVQKSIDGSFSTVQELKGLDIVRRDWCDLAKMAGNFAVNRILSDEPREYIVEKIHENLE 1035

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            ++   ++     LEK+ I K LTK P  YP   N PHV+VALR+  S  +    +GD V 
Sbjct: 1036 EIGRKVKENMFELEKFEIRKELTKDPNLYPGKDNLPHVRVALRV-NSSMTKRLKSGDIVS 1094

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            YI+C       GS+    QRA   DE+K  D +  +D +YY + Q+HPVV+RLC  I+GT
Sbjct: 1095 YIVC-----KDGSNAPATQRAYTIDEVKSKD-ELKVDEEYYLAHQVHPVVTRLCDPIDGT 1148

Query: 1276 SPERLADCLGLDPSKFQ-SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSC--SS 1332
                +A CLGLDPS F+ S+  E  + D   S+     +EE++ GC+  I  CP    + 
Sbjct: 1149 DAAMIAQCLGLDPSGFKRSQIDEEENEDRLMSV--QATEEEKFAGCKRFIFVCPQTKKTV 1206

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
            TFD                   ETE ++  +L  P   +++         + NQ+     
Sbjct: 1207 TFDQGVFA--------------ETEPSWLCSLATPCGTDDMRQVVDFFVSLQNQLTDAIR 1252

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
            G +  YY G + CDD  C + T +L +    +     VC       G L  + T   LY 
Sbjct: 1253 GDIDEYYLGWLKCDDPACSHRTTTLPVVSERNGAMCNVC-----FKGVLKPEVTYQSLYH 1307

Query: 1453 QLTYFCHLLDTQRGIEK 1469
            QL ++    D +  ++K
Sbjct: 1308 QLCFYKLQFDVEYALKK 1324


>gi|351697785|gb|EHB00704.1| DNA polymerase alpha catalytic subunit [Heterocephalus glaber]
          Length = 1342

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1471 (34%), Positives = 750/1471 (50%), Gaps = 197/1471 (13%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALE+LK       ++G+   Y ++    +Y+ V E+
Sbjct: 16   VSDSGSFVASRARREKKSKKGRQEALEKLKK-----AKAGEKYKYEVEDFTSVYEEVDEE 70

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
             Y  LV  R+++    IVDDDG GY ++G+E  D  +      + ++  DG+   K ++ 
Sbjct: 71   RYSKLVQARQDDDW--IVDDDGTGYVEDGREIFDDDLDDDALDTSEKGKDGKTHNKDKKN 128

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++   
Sbjct: 129  VKK------LAVTKPNDIKSMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTET 176

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
                P      +++RS+ ++   F SV++ K      T S  S KE         ++   
Sbjct: 177  PRITPPPVMLRKKKRSIGASQNPF-SVHTPKVIPSGKTASPASRKEPPLTPVPPKHAQFS 235

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIS 290
               VQ +  +  +ES  +++E  +  E  + +  V  +       +++    + +  K  
Sbjct: 236  GELVQPEYPEDEQESGAMEFEDGDFDEPMEAEE-VNTEPMAAKTWDQESDPAEGMKHKAD 294

Query: 291  TEKDPLLSATAGWKEVSGGNMVL--DEGKSGLNCQESEFEV------DDDGSLPFYILDA 342
              K  +    +   +VS  ++    D   S L  Q    ++      D++    FY LDA
Sbjct: 295  PRKGTMSCLGSFLPDVSCWDIDQEDDSSFSALEVQVDSNQLPLVKGSDEEQVFRFYWLDA 354

Query: 343  HEQLSGANMGTLYLFGKVKAGSTH-HSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
            +E       G ++LFGKV   S   H  C        CV                     
Sbjct: 355  YEDQYN-QPGVVFLFGKVWIESAKTHVSC--------CVMV------------------- 386

Query: 402  EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
                       K ++ +   L  E+                V++ YAF   ++P    Y 
Sbjct: 387  -----------KNIERMLYFLPREMI---------------VEKNYAFEIPDVPEKSEY- 419

Query: 462  LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
            L++ Y  + P LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +        P  
Sbjct: 420  LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP-- 477

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
            +SWCK+E     P  + V    K V   PP+ V + ++KT+ N +   NEI++ + +  H
Sbjct: 478  ISWCKFEAMALKPDLVNVI---KDVGP-PPLVVMSFSMKTMQNAKNHQNEIIAIAALVHH 533

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
               +D         +P   SHF VV K    IFP  F +    +  K          +ER
Sbjct: 534  GFALDKAP-----PQPPFQSHFCVVSKPKDYIFPCAFKEVIKKKKVKVEV-----AETER 583

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
             LL   + +++KLD D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS MPKL 
Sbjct: 584  TLLGFFLAKVHKLDPDIIVGHNIYGFELEVLLQRINVCKVP--YWSKIGRLKRSNMPKL- 640

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
                  GS +  G  +   GR++CD  + +++L+   SY L++L +  L  +R  +   +
Sbjct: 641  ------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILRIERIVIPVEN 694

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G R++R
Sbjct: 695  VRNMYSESSHLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSER 754

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
             E+LLLHAF    YIVPDK  + K                  ++L +ED   D DTS   
Sbjct: 755  NEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGDTSK-- 796

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
            ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R        
Sbjct: 797  YKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVVSEAQKV 856

Query: 934  SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQAL 987
            + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   + Q DI+Q+AL
Sbjct: 857  AEDGEQEQIPELPDPSLEMGILPREIRKLVERRKRVKQLMKQQDLNPDLVLQYDIRQKAL 916

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            KLTANSMYGCLGFS SRFYAKPLA L+T +GRE            +NLEVIYGDTDSIMI
Sbjct: 917  KLTANSMYGCLGFSYSRFYAKPLAALVTYKGRE------------MNLEVIYGDTDSIMI 964

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMP 1106
            ++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG  
Sbjct: 965  NTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNY 1024

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
                E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L++++E++ +G +
Sbjct: 1025 VTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKKLIEIRENVLNGSI 1084

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
             + ++ I K LTK P+ YPD K+ PHV VAL +  S       AGDTV Y+IC       
Sbjct: 1085 PVSQFEINKALTKDPQDYPDKKSLPHVHVALWI-NSQVGRKVKAGDTVSYVIC-----QD 1138

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            GS++  +QRA  P+ L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  LGL
Sbjct: 1139 GSNLTASQRAYAPELLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAALIATWLGL 1197

Query: 1287 DPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSI 1343
            DP++F+         + + +LL     + DEE+YR CE     CP+C +         +I
Sbjct: 1198 DPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCEKFKCPCPACGT--------ENI 1247

Query: 1344 CMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
              SV +  S  + E + +R   + C   P            ++N++       +  YY G
Sbjct: 1248 YDSVFDG-SGTDLEPSLYRCSNIDCKASPLTFVV------QLSNKLIMDIRRCIKKYYDG 1300

Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCP 1432
             ++C++ TC+  T  L L+    +  G +CP
Sbjct: 1301 WLLCEEPTCRNRTQHLPLQF---SRSGPLCP 1328


>gi|6015012|sp|Q27152.1|DPOLA_OXYTR RecName: Full=DNA polymerase alpha catalytic subunit
 gi|1401224|gb|AAB57771.1| DNA polymerase alpha catalytic subunit [Oxytricha trifallax]
          Length = 1513

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1194 (36%), Positives = 661/1194 (55%), Gaps = 121/1194 (10%)

Query: 321  NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQR 378
            N QE    ++++G+L FY +DAHE+ +G +   LY+FGK+         SC + V  MQR
Sbjct: 342  NTQEFPLPLNENGTLSFYWIDAHEENNGTD---LYIFGKIYQPQMRQFVSCSMKVNGMQR 398

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
             +YA+P              K   ++R +     +K Q  A+ ++ +   +     +S +
Sbjct: 399  ELYALP--------------KMRGKARGALTVEEEKQQVRAVMMELDDIRKKRFPQISKW 444

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
               PV R+YAF +  I  GE+  LKI Y    PPLP+ ++G  F  + G+  S LELF++
Sbjct: 445  RCKPVNRKYAF-EMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFIL 503

Query: 499  KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
            KRK++GP W++I   +     ++ +WC+  I +D+PK++ V+    +  E+PP+T    +
Sbjct: 504  KRKIRGPCWMTIKNPTKVTDFKK-TWCRQGIVIDNPKNVEVTLEDLNKQELPPLTSLTFS 562

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
             KT    +Q+ NEI  A + C     I+T +      +      FT++RKLDG   P  F
Sbjct: 563  FKTT-RAQQNTNEI--AMISCL----INTNIAQEGPSQVERTQSFTLLRKLDGKPMPYDF 615

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            +++   R      N++    +ER ++   + +++ +D D++V HN+ G   D+LL R Q 
Sbjct: 616  DQKVKQRKE----NIIQKFENERQMIEAFIAKVFIVDPDLVVAHNLCGGMFDLLLARIQY 671

Query: 679  CRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL 735
             +V  + WS+IGRLK++++P  +    G +  GS   P  ++C  GRLL DTFL +++L+
Sbjct: 672  LKV--NHWSRIGRLKKTQIPNKKLDFGGSSYGGSQWIPRQVTC--GRLLVDTFLSAKELV 727

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
            RE SY LT LAK QL KDR++     +  ++ T E L  LI++ E DA+L+++LM HL++
Sbjct: 728  RETSYDLTYLAKVQLKKDRQDFDDELLPTLYITSERLFSLIDHTEKDAYLTIQLMNHLAI 787

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            +PLT QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD     K+   AK    
Sbjct: 788  IPLTLQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----KKAPFAKDFKR 842

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
            +   D   EEL +                 ++  AYAGGLV+EPK G YD  ILLLDFNS
Sbjct: 843  NMFADE-FEELKS--------GKGPKKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNS 893

Query: 916  LYPSIIQEYNICFTTVERSP----DGL-----------------------VPHLPSSKTT 948
            LYPSIIQEYN+CFTTV R P    DG                        +P    +   
Sbjct: 894  LYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLPDKNVNVKD 953

Query: 949  GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
             VLP +L++LVQ+R+ VK  MK     +K+ QL+I+Q+A+KLTANSMYGCLGF +SRF+A
Sbjct: 954  AVLPNVLRDLVQKRKAVKEKMKNEKDAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHA 1013

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ- 1066
            + +A LIT+ GR+ L  T D+ +N L   V+YGDTDSIMI++G + + ++  + GK  Q 
Sbjct: 1014 QAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEM-GKRPQG 1072

Query: 1067 -EVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSL 1124
             ++   YKCLEI++DG++K +LLLKKKKYAA+K + F       V E KGLDMVRRDW  
Sbjct: 1073 LKLIALYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCP 1132

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            LSK VG+F L+QILS +  EDVV +++  L  + E M++  + L++++ITK LTK    Y
Sbjct: 1133 LSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFIITKQLTKAISEY 1192

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
             D K QPHV VA RLK  G S      + +PY+I  +    S ++  +A +A HP+E+  
Sbjct: 1193 SDIKGQPHVAVAQRLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPALAGKAYHPEEVVS 1252

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
              GK ++DI++Y + Q+ P ++RL   I+G   E +A CLG+DP K++   SE  + + +
Sbjct: 1253 SKGKILLDIEWYITMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSSEKKTGETN 1312

Query: 1305 S-------SLLFAVGDEERYRG--CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPE 1355
            +       + +     E   +G     L + CP CS ++  P +               +
Sbjct: 1313 NDDGTLIQNPILQTETERSLKGRTIAELTIKCPHCSESYHFPGIFQ-------------D 1359

Query: 1356 TEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
             + N    L C KC +      I    I N+V       +++YY+G   C +  C     
Sbjct: 1360 GKNNTLSGLLCIKCTQP-----IPEAYIQNRVTLFLKQLLTLYYQGNKQCQEPAC----G 1410

Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
            +++ +L+ + +    C N   C  +   +YTE      L Y   L + ++ I++
Sbjct: 1411 AVSRQLLYNNK----CINLA-CKLKNDTRYTEQKTNDTLRYLQGLFNVKKYIQE 1459



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE 91
          I+D + +DEYD +  +R+ +   FIVDDDG GY D G E
Sbjct: 30 IFDEIDDDEYDKIQDQRKND--DFIVDDDGYGYRDHGGE 66


>gi|47118289|gb|AAT11255.1| DNA polymerase alpha [Holosticha sp. WJC-2003]
          Length = 1483

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1248 (35%), Positives = 666/1248 (53%), Gaps = 143/1248 (11%)

Query: 315  EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            +  + LN  +     + DGSL FY +DAHE+ +G +   +Y+FGK+         SC + 
Sbjct: 324  DSNAALNQYDYPLPFNPDGSLSFYWIDAHEENNGQD---IYIFGKIYQPEVKSFVSCALK 380

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V  MQR +YA+P     +      L K+ E+ ++  M    +L D+     T+I      
Sbjct: 381  VNGMQREMYALPK---IKNKARSALSKEEEDKQV--MNIFHELDDIRKKRFTQI------ 429

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
               + +   PV R+YAF +  I  GE+  LK+ Y    P LP  L G  F  + G + S 
Sbjct: 430  ---TKWKCKPVMRKYAF-EMPIQHGEHKFLKVKYDCTMPSLPPGLTGNTFECVFGANQSM 485

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVA 547
            LEL ++KRK+KGP W ++       +PQ+V+     WC+ EI ++ PK I V+    +  
Sbjct: 486  LELLILKRKIKGPCWFTLK------SPQKVTDFKKTWCRQEIFINDPKQIEVTLDDLNRT 539

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
            E PP++    + KT    + + NEI   S +     + D P    +++       FT++R
Sbjct: 540  ETPPLSSFTFSFKTT-RSQHNTNEIAMISCIIHQNVQQDGPTTLDKFQS------FTLLR 592

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
            KLDG   P  F  +   +        L    +ER +++  + +L   D D+LV HN+ G 
Sbjct: 593  KLDGKPMPHDFEYKLKSKRD------LSYFPNERQMIDAFINKLTITDPDLLVAHNLCGG 646

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLL 724
              ++LL R Q  ++  + WS+IGR+K+S +P  +    G +  GS   P  ++C  GRLL
Sbjct: 647  MFELLLARIQFLKI--NHWSRIGRMKKSNIPSKKFDQGGPSYGGSQWIPRQVTC--GRLL 702

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAW 784
             DTFL +++L+RE +Y L+ LAK QL + R+E     + + +Q+ E +  L E+ E DA+
Sbjct: 703  VDTFLTAKELIRETNYDLSHLAKVQLKQTRQEFDDELLPQFYQSSERIFSLGEHTEKDAY 762

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L+++LMFHLSV+PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK    
Sbjct: 763  LTIQLMFHLSVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK---- 818

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                  KQ +N  ++      L  E+   D           ++   Y+GGLV+EPK G Y
Sbjct: 819  ------KQLTNKELK----RGLFGEE---DEQGDDKKKGGKRKKAQYSGGLVIEPKAGFY 865

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP------------------------DGLVP 940
            D  ILLLDFNSLYPSIIQEYN+CFTTV R P                           +P
Sbjct: 866  DNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYNGTDIKNDFKGEGEEDNEEETVELP 925

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLG 999
               +     VLP +L++LVQ+R+ VK  MKT    +K+QQL+I+Q+A+KLTANSMYGCLG
Sbjct: 926  DKNTKANDAVLPNVLRDLVQKRKAVKDKMKTEKDPIKLQQLEIRQKAIKLTANSMYGCLG 985

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
            F++SRF+AK +A LIT+ GRE L  T D+ +N L   V+YGDTDSIMI++G + +  A  
Sbjct: 986  FASSRFHAKAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGCNQLQMALE 1045

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI-ERKGLDMV 1118
            +  K+  EVN  YKCLEI++DG++K +LLLKKKKYAA+K +       +++ E KGLDMV
Sbjct: 1046 MGKKLKAEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYENWTTPDAKIVQEMKGLDMV 1105

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRDW  LSK VG++ L+QILS +  E+VV +++  L  + + M++ ++ L +Y+ITK LT
Sbjct: 1106 RRDWCQLSKTVGNYVLAQILSGKQREEVVLNLNEYLSDIGQKMKACEIPLAEYIITKQLT 1165

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            +    Y D K QPHV +A+R K  G S      + +PY+IC +   +   +  +A +A H
Sbjct: 1166 RAISEYSDIKGQPHVIIAMRQKALGKSESELVNNFIPYVICKKPFDAEKLTPQLADKAFH 1225

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
            P+E+    GK  IDID+Y + QI P ++RL   I+G   E +A CLG+DP K++    + 
Sbjct: 1226 PEEVINSRGKHEIDIDWYITAQILPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSEKK 1285

Query: 1299 MSSD------PSSSLLFAVGDEE--RYRGCEPLILSC--PSCSSTFDCPAVCSSICMSVS 1348
             S D      P S+ +     E+  ++R    L + C  P C   +D P +       VS
Sbjct: 1286 NSVDGVEDSGPVSNPILHTETEKSLKHRSIAELKIRCLGPDCGEYYDFPGIYQE-GKDVS 1344

Query: 1349 EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDE 1408
                           L C KC      G I    + N++       + +YY+    C++ 
Sbjct: 1345 --------------GLVCKKC-----NGGIPEQYVMNRINLFLKQLIMLYYQAPYECNEP 1385

Query: 1409 TCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
             CK  +  L   L+ +      C   P C G++  +Y+E      L Y   L + +  I 
Sbjct: 1386 HCKQKSRQL---LVNNK-----CV-IPTCKGKMTAEYSEQQTNDTLRYIQGLFNVRTYIH 1436

Query: 1469 KMEISAK---IPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            + +++     IP  +  + ++       + V  + ER  Y  V L +I
Sbjct: 1437 ENKLAKHVDDIPHSQSYSVLK-------TKVDSVMERSKYNKVDLKNI 1477



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 2  KDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDE 61
          +D     +GR   +    + +  AL +L+A R GG +  D   Y ++    I++ V  D+
Sbjct: 3  QDSYHTSSGREVKKSGNKNVKG-ALAQLRAAREGGDKRTDQ--YQVEEARRIFEEVDNDQ 59

Query: 62 YDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV 96
          YD L   R  +   FIVDDDG GY D G  E W V
Sbjct: 60 YDKLQEDRLND--DFIVDDDGYGYRDHGG-EIWEV 91


>gi|164655126|ref|XP_001728694.1| hypothetical protein MGL_4173 [Malassezia globosa CBS 7966]
 gi|159102577|gb|EDP41480.1| hypothetical protein MGL_4173 [Malassezia globosa CBS 7966]
          Length = 1409

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1229 (35%), Positives = 647/1229 (52%), Gaps = 158/1229 (12%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPL 388
            DD S+ F+ +D  +    AN G ++LFGKV  +A + + S  V +  M+RCV+ +P    
Sbjct: 287  DDRSVHFFWIDYFD----AN-GKIFLFGKVLDRATNKYVSASVAIDGMERCVFLLP---- 337

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
             +T  I+    D  E+ + P        DV      E         + +++   V+R+YA
Sbjct: 338  -RTRTIV----DGHETDMVPGE-----DDVF----EEFETMRSRYGIKSWLGKWVRRKYA 383

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            F   ++PA   Y LK+ Y F +P LPAD+ G  F    GTH+SA EL ++KR++ GP WL
Sbjct: 384  FELPDVPAEGPY-LKVKYGFDEPALPADISGATFSRAFGTHTSAFELLVLKRRIMGPCWL 442

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA--EVPPVTVTAINLKTVFNKR 566
             I + S    P R +W K E+ VD PK +   S +   A  E PP+T+ ++ L+TV N +
Sbjct: 443  RIEQASLPSGPPR-TWTKLELEVDDPKSVSPFSDTDANAPKEPPPLTIMSLALRTVVNYK 501

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++  EIV+ S        ++ P    +       S FT VR L G  FP  F ++A    
Sbjct: 502  ENKREIVAVSARVWRDMALENPTPPEQLPS----SSFTAVRPL-GASFPPRFEEQAAQ-- 554

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
               G N +     ER +LN L+ ++   D+DV++ H+  G  +D LLHR +  +  +  W
Sbjct: 555  ---GKNKIKAFKFERMVLNSLLGQIQWHDADVILSHDFVGSTMDTLLHRMRDLKCEN--W 609

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQL 745
            +++GR+++     +++      +         + GRL+ D +   ++ ++   ++SL+++
Sbjct: 610  TRLGRMRQDVSKMVKQSLHALHT-------RMLVGRLVADLSSDTAKGMIPSTTWSLSEM 662

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ----TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             +T LN  R+++ P DV   F     T E L+  + + E DA+  M +   + +L LT+Q
Sbjct: 663  CRTHLNAQREDIDPEDVASFFDCTAPTPERLLTFVRHCEVDAFFQMAMACKMQLLALTKQ 722

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            LTN++GN W +TL G RA+R EY+LLH F  KKYI PDK + + + K AK+      +++
Sbjct: 723  LTNLAGNAWSRTLNGGRAERNEYILLHEFHKKKYICPDKQS-MWDKKAAKKEEGSAKKEK 781

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                         + GGLV EPK+GL+DKYIL++DFNSLYPSII
Sbjct: 782  -----------------------------FKGGLVFEPKRGLWDKYILVMDFNSLYPSII 812

Query: 922  QEYNICFTTVERSPD---GLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT--ASGL 975
            QEYNI FTTVER  D     VP +PSS    GVLP L+  LV RRR VK  MK   A  L
Sbjct: 813  QEYNIDFTTVERHADQDGDDVPDVPSSDVAQGVLPHLIATLVNRRRQVKALMKDKHAPAL 872

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            K  Q +I+QQALKLTANSMYGCLG+ NSRFYA+PLA L T +GREIL +T +L ++ ++L
Sbjct: 873  KQLQWNIKQQALKLTANSMYGCLGYENSRFYARPLAALTTFKGREILSTTRELAES-MSL 931

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            +VIYGDTDS+MI++   D   A  I  +  + VN++Y+ LEID+DG+++RMLLL+KKKYA
Sbjct: 932  DVIYGDTDSVMINTRCIDYQAAIKIGHEFRRAVNERYRLLEIDIDGVFQRMLLLQKKKYA 991

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            A+ V        E+   KGLDM RR++  LSK    + L QILS  + E VVE +H  L 
Sbjct: 992  ALLVNETGATQTEI---KGLDMKRREYCALSKRASAYVLEQILSGEATETVVEKMHEYLQ 1048

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            ++  D+R G++ L+ YVI K L K P+ YPDA+NQPHVQVALR+     +    +GD +P
Sbjct: 1049 QLATDVREGRIPLDDYVIYKRLGKRPQDYPDAQNQPHVQVALRMLAKNET--ARSGDVIP 1106

Query: 1216 YIICCEQGT-------------------SSGSSVGIAQRARHPDELKK--GDGKWMIDID 1254
            Y+ C    T                      +    A+RA HPD++++   D  + ID  
Sbjct: 1107 YVFCVGPQTPSSNDSINNSNHNSNNHHHHQHTKATQAERAFHPDDVRRHMDDPAYAIDYK 1166

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE---------TMSSDPSS 1305
            +Y S QI P + RL  S+EGT   RLA CLGLD   + S             T+ S   S
Sbjct: 1167 HYLSLQILPPIERLADSMEGTDRSRLAACLGLDVHTYTSSSHASSDSSREWMTLESQVPS 1226

Query: 1306 SLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLR 1365
            S+        RY  C+PL + C  C +  D   +  S   S    P         W  L 
Sbjct: 1227 SI--------RYAHCDPLRVRCRQCGAVSDAVPLAHSARTSEGAAP---------W--LS 1267

Query: 1366 CPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDA 1425
            CP C          P ++  Q++      ++ YY+G+  C + +C+ ++      + G  
Sbjct: 1268 CPSC----STAWTLPSLVV-QLQLAIRAHIARYYEGVQTCTEPSCRASST-----MTGVY 1317

Query: 1426 ERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD-TQRGIEKMEISAKIPLEKELNK 1484
                V P    C G+++ +Y +  LY QL Y+ +L D TQ   E  E +  + L   ++ 
Sbjct: 1318 SGRCVVPG---CRGKVLAQYPDKALYTQLCYYAYLFDSTQAMAETSEAAQHLRLRDTIDA 1374

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             R  + +  +TVQ+   R A  +V L+ +
Sbjct: 1375 RRADLDVLYATVQQYLARNARRFVGLDKL 1403


>gi|392575421|gb|EIW68554.1| hypothetical protein TREMEDRAFT_31892 [Tremella mesenterica DSM 1558]
          Length = 1468

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1169 (36%), Positives = 621/1169 (53%), Gaps = 127/1169 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            +++DG+L  + LD  EQ      G ++L GKV  +    + S CV V  +QR ++  P  
Sbjct: 357  LEEDGTLRMFWLDFIEQ-----DGVVHLVGKVLDRQSGKYVSACVSVNGIQRNLFVKPRP 411

Query: 387  PLFQTDEIMKLEKDAEESRISPMA-FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKR 445
              F        E D E ++      F K  Q                  V  +    V+R
Sbjct: 412  KRFSGGH----ETDLEVTKTDVYQDFDKARQKAG---------------VEEWAAKFVQR 452

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            +YAF + ++P GE+  LK+ Y F  P +P D +G  F  + GT++SA EL ++KRK+ GP
Sbjct: 453  KYAFEEKDVPKGESEWLKVVYGFDQPEMPMDCQGPTFSRVFGTNTSAFELLVIKRKIMGP 512

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR--VSSSSKHVAEVPPVTVTAINLKTVF 563
             WL I       + +  SWCK E    SPK++      +     ++PP+T+T+I+L+T+ 
Sbjct: 513  CWLEIK--GPVLSTKATSWCKIEFHTSSPKNVNPLTEDAPNAPKDIPPLTITSISLRTIV 570

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
            N R++  EI+ A+        ID P      + P  L+  T+VR ++   FP      A 
Sbjct: 571  NHRENKTEILCATTRTWESCNIDDPTPPD--RLPSTLN--TIVRPIEK--FPPNLESRA- 623

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
                K   +      +ERALLN L+  + + D DV+VGHN  G   + LL+R +  +  +
Sbjct: 624  ----KTERSPFQTVKAERALLNSLLATIQRHDPDVIVGHNFLGNGFEALLYRMKELK--A 677

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSL 742
              WS+IGR +R      + G  +            +AGRL+ D +   ++ ++   ++SL
Sbjct: 678  DRWSRIGRFRRKTFNISKAGNNV----------RLMAGRLVADLSSDAAKGMISSTTWSL 727

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMF-QTL---ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            T++  T L   R+++ P D    F  TL   E L++ I   E D++  M +   + +LPL
Sbjct: 728  TEMCGTHLKIQREDIDPEDTHGYFDHTLSGPEKLIKFIRLCEVDSYFQMAIAARVQMLPL 787

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+QLTN++GN W  TL G RA R E++LLH F   KY+ PDK          K R+    
Sbjct: 788  TKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFHRLKYVCPDK-------TFKKTRT---- 836

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKGLYDKYILLLDFNSLY 917
                   +T ED +        +    KRG A YAGGLV +PKKGL+D YIL++DFNSLY
Sbjct: 837  -------ITMEDED-------EEVPMAKRGKAKYAGGLVFDPKKGLWDTYILVMDFNSLY 882

Query: 918  PSIIQEYNICFTTVERSP------DGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMK 970
            PSIIQEYNI FTTVER P      +  +P +P  +   GVLP ++  LV RR+ VK  MK
Sbjct: 883  PSIIQEYNIDFTTVEREPVDEEGEEDKIPDVPGGEIPQGVLPRIIATLVGRRKQVKALMK 942

Query: 971  --TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
               A+  ++QQ DI+QQALKLTANSMYGCLGF  SRF ++PLA L T +GREIL  T +L
Sbjct: 943  DKNATAAQLQQYDIRQQALKLTANSMYGCLGFQGSRFSSRPLAALTTYKGREILTHTREL 1002

Query: 1029 VQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLL 1088
             ++ L L+V+YGDTDS+ ++S +    +A  IA    + VN++Y+ LEIDLD +++R+LL
Sbjct: 1003 AES-LQLDVVYGDTDSVFVNSNVTSYPEALKIANDFKKLVNERYRLLEIDLDAVFERILL 1061

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            L KKKYAAVK+   D    +  E KGLDM RR+++ +SK+     L +ILS ++ E VVE
Sbjct: 1062 LNKKKYAAVKI---DASGDKTTEVKGLDMKRREFAKISKDASAAVLKEILSGQATEVVVE 1118

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             IH  L  + E +RSG + LE ++I K L K PE YPD K+QPHVQVALR+K  G     
Sbjct: 1119 KIHEYLTSLGETVRSGGIPLEDFIIFKRLGKNPEDYPDKKSQPHVQVALRMKSKG--VAV 1176

Query: 1209 SAGDTVPYIICC-EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             A D +PYI+C  E G S+ S+   A RA HPD+L++   +  ID D+Y   QI   V R
Sbjct: 1177 RAHDVIPYIMCLGEDGKSAKSAH--ADRAFHPDDLRRQGSELRIDFDFYLDGQILQPVLR 1234

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
            LC SIEGT   RLA+CLGLDP+++ +     ++     +    + D+ER++   PL L C
Sbjct: 1235 LCESIEGTDRARLAECLGLDPTRYATHTGGEVTEKQFFTFESQISDKERFKDASPLSLRC 1294

Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG-MIANQ 1386
              C S  +   +       +  +P+           L CP C        I P   I+ Q
Sbjct: 1295 IGCHSVSNFEGLLDDSSNML--QPT----------GLICPVC------SSIYPTPSISVQ 1336

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYT 1446
            ++ Q    V+ YY G  +CD E C   T     R++G   R  +      C G +  +Y+
Sbjct: 1337 MENQIRAHVARYYLGYTICDGEGCGART-----RMMGVYGRRCLGLVKEGCKGVVRLEYS 1391

Query: 1447 EADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
            +  L+ QL YF  L +T + +      AK
Sbjct: 1392 DQKLHDQLLYFHTLFNTDKALSDTRGGAK 1420


>gi|194227748|ref|XP_001494822.2| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2 [Equus
            caballus]
          Length = 1418

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1564 (33%), Positives = 790/1564 (50%), Gaps = 214/1564 (13%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 10   VSDSGSFVASRSRREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDLTSVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE--EDWSVAGLPSSSDDESLDGQRSIKKQR 118
            +Y  LV  R+++     VDDDG+GY ++G+E  +D        S +    D  R+  K+ 
Sbjct: 65   QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDSHEKGKDDKARNKDKRN 122

Query: 119  IEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEV 178
            ++K         V +PN   +   A  G++      T+      SKD+ + +    ++  
Sbjct: 123  VKK-------AVVTRPNSIKSMFMASAGRK------TADKAVDLSKDDLLGDILQDLNSE 169

Query: 179  LAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENS---------DL 229
              +  P      +++RS  +++  F SV++ K      T S  S KE S         + 
Sbjct: 170  PPQITPPPVMILKKKRSTGASLNPF-SVHTPKAVPSGKTASAVSRKEPSLTPVALKRAEF 228

Query: 230  INNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKD---EVNEDVKECK 283
                V     D  EES  + +E    D   +  + D    V  K  D   E  E VK   
Sbjct: 229  AGEPVLALCTDEKEESGAMDFEDGDFDEPMDAVEVD-METVAAKTWDQEREPAEGVKHEA 287

Query: 284  KLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGS 334
                  ++  +  L   + W        +  E  S  + QE + +          D++  
Sbjct: 288  DPGKGTTSYLESFLPDVSCWD-------IDQEDDSSFSAQEVQVDSNHLPLVKGADEEQV 340

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
              FY LDA+E       G ++LFGKV  +   T+ SCCV+VKN++R +Y +P        
Sbjct: 341  FQFYWLDAYEDQYN-QPGVVFLFGKVWIELAETYVSCCVMVKNIERTLYFLPCE------ 393

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               K++ +  +   +P+    +++DV      +IA +   +   + IV   ++ YAF   
Sbjct: 394  --TKIDLNTGKETGTPV----RMKDVYDEFDEKIATKYKIMKFKSKIV---EKNYAFEIP 444

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
            ++P    Y L++ Y                        S  EL                 
Sbjct: 445  DVPEKSEY-LEVRY------------------------SREELL---------------- 463

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
                   Q +SWCK E  V  P  + V          PP+ V + ++KT+ + +   NEI
Sbjct: 464  ------NQPISWCKVEAMVSKPDLVNVIKD----VSPPPLVVMSFSMKTMQSAKTHQNEI 513

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSN 632
            ++ + +  H   +D         +P   SHF VV K    IFP  F ++  ++N K    
Sbjct: 514  IAMAALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPHSFLEDIKEKNVKVE-- 566

Query: 633  VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL 692
                 ++ER LL   + +++K+D DV+VGHNI GF+L+VLL R  VC+VP   WSKIGRL
Sbjct: 567  ---VAATERTLLGFFLAKVHKIDPDVIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRL 621

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK 752
            KRS MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  
Sbjct: 622  KRSNMPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKT 674

Query: 753  DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            +R  +   +V  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +
Sbjct: 675  ERIVIPMENVQNMYSESSHLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 734

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +ED +
Sbjct: 735  TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDED 778

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+
Sbjct: 779  IDGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQ 836

Query: 933  R--------SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQ 978
            R        + DG    +P LP  S   G+LP  ++ LV+RR+ VK  MK    +   + 
Sbjct: 837  RVASEAQRVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVL 896

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVI
Sbjct: 897  QYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVI 955

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMI++   ++ +   +  KV  EVN+ YK LEID+DG++K +LLLKKKKYAA+ 
Sbjct: 956  YGDTDSIMINTNSTNLEEVFKLGNKVKSEVNRLYKLLEIDIDGVFKSLLLLKKKKYAALV 1015

Query: 1099 VQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
            V+   DG  +   E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++
Sbjct: 1016 VEPTSDGNYFTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEI 1075

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+
Sbjct: 1076 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYV 1134

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            IC       GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G   
Sbjct: 1135 IC-----QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDA 1188

Query: 1278 ERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTF 1334
              +A  LGLDP++F  +       + + +LL     + DEE+YR CE     CP+C +  
Sbjct: 1189 VLIATWLGLDPTQF--RVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT-- 1244

Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
                   +I  SV +   K + E + +R   + C   P            ++N++     
Sbjct: 1245 ------ENIYDSVFDGSGK-DMEPSLYRCSNIDCKASPLTFMV------QLSNKLIMDIR 1291

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
              +  YY+G ++C++ TC+  T  L L+   +     VC         L  +Y++  LY 
Sbjct: 1292 RCIKKYYEGWLICEEPTCRNRTRHLPLQFSRNGPLCQVC-----MKAVLRPEYSDKSLYT 1346

Query: 1453 QLTYFCHLLDTQRGIEKM---EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVK 1509
            QL ++ ++ D    +EK+       K+  +    ++R       ST ++   R  Y  V 
Sbjct: 1347 QLCFYRYIFDVDCALEKLITDHEKEKLKTQYLTPRVREDYKKLKSTAEQFLSRSGYSEVN 1406

Query: 1510 LNDI 1513
            L+ +
Sbjct: 1407 LSKL 1410


>gi|121715516|ref|XP_001275367.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
            clavatus NRRL 1]
 gi|119403524|gb|EAW13941.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1461

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1585 (31%), Positives = 783/1585 (49%), Gaps = 221/1585 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ++ARA+ LE L+ALR  G++   +  Y I+ ++ IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2    SAARAK-LEELRALRAAGKKRLST--YEIEEQDDIYEEVDDEGYKKII-RNRLDQDDFVV 57

Query: 79   DDDGLGYGDEGQEEDW--SVAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W  + A   S SDD+ L  + ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNEATAEYNSESDDDELPARSKAAKRKREEEKQRKEKINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRR 194
              S  AA+A                  K K     E ++ + ++L E   +        +
Sbjct: 117  FNSGPAASA-----------------PKPKPVATAEDDAFMADLLGEVDTNVVSNHIPTK 159

Query: 195  SV-SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESD 253
            +V  S  +  V + S   +S+  +   +   ENS+ ++   Q  + D   +   L    D
Sbjct: 160  NVIKSETRRKVRILSPPLSSRQRSGRISRKDENSEPVSPVAQQSDLDFDNDDGPLPSMDD 219

Query: 254  NSTELT------------KRDNFVEVKEKVKDEVNEDVKECKKLN--------------- 286
            +   ++            +R + + +K++  D  + D+ E  ++                
Sbjct: 220  DDVHMSDPMPSSPVSKAVERKSAINIKKEESDGEDNDIMEVAQVTGQHEAKTASVNMAGS 279

Query: 287  --------------AKISTEKDPLLSATAGWKEVSGGNMVLDEGKS---GLNCQESEFEV 329
                          A  S  K P+    A W +V     VL    S         +E  V
Sbjct: 280  RPPPKIKKENYSTPANSSPAKAPVDILDASWNDVRSKLNVLSSPASETRTFGKLHAEDVV 339

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGP 387
            ++DGSL F+ +D  E       G+L LFGKVK   T  + S  V V  + R ++ +P   
Sbjct: 340  EEDGSLRFFWIDYTEV-----NGSLCLFGKVKNKRTDSYASAFVKVDQILRKLFFLPREH 394

Query: 388  LF----QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
                  +TDE + + KD  E                     E+   +  L V  + + P 
Sbjct: 395  RHKHGRETDEEVDM-KDVYE---------------------EVDALMSRLRVGMHKIKPA 432

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF    IP    Y LK+ YP+  P LP D KGE F  + GT++S  E F++ + + 
Sbjct: 433  TRKYAFEMPNIPKETEY-LKLLYPYDKPVLPMDTKGETFSHVFGTNTSLFEQFVLWKNIM 491

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I   +   A    SWCK+E  V  P  I     ++++ + PP+T+ ++  +T  
Sbjct: 492  GPCWLKIED-ADFSAVNNASWCKFECQVTKPVSITPVPDTENL-DPPPLTLMSLAFRTHL 549

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKE 621
            N +++  EI+ AS      A++   +  ++   P  L    FTV+R L G  +P+ F  E
Sbjct: 550  NVKENKQEILVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPL-GSSYPLHFEAE 602

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
                 ++        E SE+ LL++ M    K+D DVL+GH +   DL +LL R +  + 
Sbjct: 603  -----TRKQRGTFMLEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDLSILLSRLREKKT 657

Query: 682  PSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREV 738
            P   W ++GRL+R E PK   +G   F           IAGRL+CD    +    +++  
Sbjct: 658  PG--WHRLGRLRRGEWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQ 709

Query: 739  SYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSV 795
            S+SLT++ +  L +   R+E+     LK + T  E LM  + + + D +    L+  L +
Sbjct: 710  SWSLTEMCELYLGEGNTRQELDSEAALKTWATSKEGLMNFVNHCDADTYFIAALVLRLQM 769

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            L LT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K    
Sbjct: 770  LSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLQK---- 821

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
              VE++N             D   +D    K+   Y GGLV EP+KGLYDK++L++DFNS
Sbjct: 822  --VEEKN------------QDGEEDDAADKKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 867

Query: 916  LYPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTW 968
            LYPSIIQEYNICFTTV+R+          VP +PSS +  G+LP L+  LV RRR VK  
Sbjct: 868  LYPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPRLIATLVGRRREVKKL 927

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 928  MKDKRATPDQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTK 987

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 988  ELAESK-QLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFRRL 1046

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAAV +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V
Sbjct: 1047 LLHAKKKYAAVNMTEVDGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQELV 1106

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  +H+ L ++ + MR+ Q+ ++KYVI   L+K PE YP+ ++ P  QVALR    G + 
Sbjct: 1107 LNRVHDYLKELADKMRAYQIPVQKYVIYTKLSKRPEEYPNKESMPPAQVALRELARGKT- 1165

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + YI+    G +  SS+  A+R+    ++ K +     DI++Y  +QI P + 
Sbjct: 1166 -IRPNDVISYIVT--NGDAETSSLAPAKRSYTLQDVMKPESGLKPDIEFYLLKQIFPPIE 1222

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEP 1322
            RLCA I GT   RLA+CLGLD  K+Q   S T  S+  ++ +F     + D  R+     
Sbjct: 1223 RLCAPIPGTDAVRLAECLGLDVRKYQINTSST--SNQQNAEIFPLESQIPDSVRFENAAR 1280

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L+C  C   S F+     + +C                  T     CP +      + 
Sbjct: 1281 LTLTCRFCKEKSIFEGLVASTHMC------------------TANGIICPNQACQKPFTV 1322

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   R         C
Sbjct: 1323 LTIVAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GC 1376

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQR---------GIEKMEISAKIPLEKELNKIRPV 1488
             GR+  +YTE  +Y QL YF  L D  +         G +K  I+A +    E N+ R  
Sbjct: 1377 LGRMSYEYTEKQMYNQLLYFAGLWDVDKAKSNAQRESGEKKDSIAALV----EFNRTR-- 1430

Query: 1489 VALAASTVQRIRERCAYGWVKLNDI 1513
                   V    ++C   WV+++ +
Sbjct: 1431 FGTVKDVVDSYLKKCGRQWVEMDSL 1455


>gi|296813443|ref|XP_002847059.1| DNA polymerase alpha catalytic subunit [Arthroderma otae CBS 113480]
 gi|238842315|gb|EEQ31977.1| DNA polymerase alpha catalytic subunit [Arthroderma otae CBS 113480]
          Length = 1463

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1585 (32%), Positives = 771/1585 (48%), Gaps = 224/1585 (14%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            +ARA+ L  L+ALR  G++      Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2    AARAK-LAELRALRASGQKR--LATYEVQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 57

Query: 80   DDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLT 139
            D+G GY D+G+EE      + S SD + L     ++ +  +++ ++EN +  +  N    
Sbjct: 58   DNGEGYADDGREEWDDTRHVASESDSDGL----PVRGKAAKRKREEENQRKEKIANGINK 113

Query: 140  AAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE-ADRERRRRSVSS 198
               A + KQ       +TA           + E+ + ++L +        +   ++S+ S
Sbjct: 114  YFTATLTKQTSKPKPVATA-----------DDEAFLADILGDVETSTIPSKAHVKKSIKS 162

Query: 199  NIKSFVSVNS--------VKTNSQLVTNSTNSVKENSDLIN-----NFVQIQNCDVVEES 245
              +  V + S        VK     + N     K++S L +      F+   N D +   
Sbjct: 163  ETRRKVRIVSPPFQLKPRVKKAENELENDRTPSKDHSALDDVLEDDGFIDSGNDDAIMSE 222

Query: 246  KEL-------KWESDNSTELTKRDNFVEVKEKVKDEVNEDVKEC---------------K 283
            + L         E   +     R   ++ +E   D+   DV E                K
Sbjct: 223  QPLPSSPVANAVERKTANASKSRQEIIKKEEDDVDDDMIDVAEAVADHSAHVPSVDMVGK 282

Query: 284  KLNAKISTE--KDPLLSATA----------GWKEVSGGNMVLDEGKS------GLNCQES 325
            +   KI  E   DP+ S+ A           W +V+    VL+   S       L  Q++
Sbjct: 283  RPPPKIKKEVYDDPMASSPARATTEMINPSSWNDVTSKLNVLNSSVSEMQRFGKLTAQDA 342

Query: 326  EFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAI 383
               V++D SL F+ LD  E       G+L LFGKVK  A  ++ S  V V N+ R +Y +
Sbjct: 343  ---VEEDDSLRFFWLDYTEV-----NGSLCLFGKVKNKANDSYVSAFVKVDNILRKLYFL 394

Query: 384  PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
            P    ++  +    E D E+                  +  E+   +    V  + + P 
Sbjct: 395  PREYKYRRGQTTDEEVDMED------------------VYGEVDEIMSRSKVEMHKIKPC 436

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF   +IP    Y LK+ YP+  P LP DLKGE F  + GT+++  E F++ + + 
Sbjct: 437  TRKYAFELPDIPKETEY-LKLMYPYTKPALPMDLKGETFSHVFGTNTALFEQFVLWKNIM 495

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I   +   A    SWCK E  V +P +I +   S+ V E PP+T+ +++ +T  
Sbjct: 496  GPCWLKIED-ADFTAVNGASWCKLECQVSNPAEISLVPDSEEV-ETPPLTLMSLSFRTQL 553

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKE 621
            N +++  EI+ AS      A++   +L S+   P  L    FTV+R      +P+GF  E
Sbjct: 554  NIKENKQEIIVAS------ARVYENLLLSDTTLPENLPCKTFTVMRP-SNSTYPLGFEAE 606

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
            A     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  + 
Sbjct: 607  A-----KKQRGTVMLEKTEQFLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLREKKT 661

Query: 682  PSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREV 738
            P   W +IGRLKR E PK   KG   F           +AGRLLCD    +    +++  
Sbjct: 662  PG--WHRIGRLKRGEWPKNFSKGSGFFSE------RHLLAGRLLCDVANDMGKSLMMKCQ 713

Query: 739  SYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSV 795
            S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L +
Sbjct: 714  SWTLTEMCQLYLGERDQRREVDTEAALKTWATTKEGLMNFLSHCEADTYFIAALVLKLQM 773

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+    + K+ +    
Sbjct: 774  LPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGQKTQIKVEENEEE 833

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
             G++ +  E                          Y GGLV EP+KGLYDK++L++DFNS
Sbjct: 834  DGIDKKKKE-------------------------KYKGGLVFEPEKGLYDKHVLVMDFNS 868

Query: 916  LYPSIIQEYNICFTTVERSP------DGLVPHLP-SSKTTGVLPELLKNLVQRRRMVKTW 968
            LYPSIIQEYNICFTTV+R        +  VP +P SS+  G+LP L+  LV RRR VK  
Sbjct: 869  LYPSIIQEYNICFTTVDRHASSENDREESVPEVPDSSQALGILPRLIATLVNRRREVKKL 928

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+T 
Sbjct: 929  MKNKNATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNTK 988

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L + N  L VIYGDTDS+MI++  D++ +A  +  +  + VN++Y+ LEID+D ++KR+
Sbjct: 989  ELAETN-QLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRL 1047

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E V
Sbjct: 1048 LLHAKKKYAAINLSEVDGTYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVEIV 1107

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G S 
Sbjct: 1108 LNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGKSV 1167

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + YI+    G +  SS+  A+R+    ++ K D     D+++Y  +QI P + 
Sbjct: 1168 --RPNDVISYIVTT--GDAETSSLPPAKRSYTLQDVIKTDSGLKPDVEFYLLKQIFPPIE 1223

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGDEERYRGCEPLI 1324
            RLCA I GT   RLA+CLGLD  K+Q  S  +         +L   + D  R+     L 
Sbjct: 1224 RLCAPIPGTDAARLAECLGLDVRKYQISSNTAHGQQETELCALESQIPDSIRFEKAARLN 1283

Query: 1325 LSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK---CPEEVEAGRISPG 1381
            L C  C  T     +  S                   R +  P    CP+   A   +  
Sbjct: 1284 LKCRFCQKTIIFEGLIGS-------------------RDICSPNGIVCPDPACAKTFTVI 1324

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCN 1438
             I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         C 
Sbjct: 1325 SIIAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE------GCL 1378

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN--KIRPVVALAA--- 1493
            GR+  +YTE  LY QL YF  L D ++        AK   EKE +  K   ++ALAA   
Sbjct: 1379 GRMHYEYTEKQLYNQLLYFAGLWDVEK--------AKTMAEKETSAEKKDAILALAAWNR 1430

Query: 1494 -------STVQRIRERCAYGWVKLN 1511
                   S V     +C   WV+++
Sbjct: 1431 TRFDTVKSVVDEYLNKCGRQWVEMD 1455


>gi|27413230|gb|AAG52946.1| type II DNA polymerase alpha [Urostyla grandis]
          Length = 1356

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1066 (40%), Positives = 620/1066 (58%), Gaps = 105/1066 (9%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMG-TLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPN 385
            V+ D  L F+  DAHE+    NMG  ++LFGKV         SC + V  MQR VYA+P 
Sbjct: 312  VNKDKELAFFWFDAHEE----NMGLDVFLFGKVYQPELKQYVSCSLKVNGMQRIVYALP- 366

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL--NVSNYIVSPV 443
                      K+ K+   + ++    +++ Q++AL + +E+     N   ++S +     
Sbjct: 367  ----------KVSKNKSRAELT----KEEEQEMALKIFSELDGIRKNKFPSISQWKCKVA 412

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            KR+YAF +  I  GE+ +LKI Y    PPLPA+L G  F  L  T  S LEL L+K+K+K
Sbjct: 413  KRKYAF-EMPIHHGEHQLLKIKYDSTMPPLPANLTGSTFECLFNTQQSMLELLLLKQKIK 471

Query: 504  GPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
            GP W+++        A  + SWCK+++ + SPKDI ++    +  E PP+T   + LKT 
Sbjct: 472  GPCWITLKNVQQITQASNKRSWCKHDLVISSPKDIVITVDDLN-KESPPLTALCLALKTC 530

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
                Q+ +EI   S++  +    D    A+  K+   +   T++R+L+    P  F   A
Sbjct: 531  -RSAQNTHEISMISMLIHNNINQDG---ATNDKR---MQSITLIRRLNTAPLPKDFEGRA 583

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 K  S++   ++ E+ALL   +  L+ +D D+L+ HN+ G  L++LL R Q  ++ 
Sbjct: 584  ---KQKKDSSIFTFQN-EKALLENFISRLHLIDPDMLIAHNLCGGILELLLARIQWLKL- 638

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGAS---PGIMSCIAGRLLCDTFLCSRDLLREVS 739
             + WS++GRLKR ++P  +     F S +    P + SC  GRLL DTFL +++L+RE S
Sbjct: 639  -AHWSRLGRLKRQQIPTKK-----FDSVSQQWVPRLASC--GRLLVDTFLSAKELIRETS 690

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            Y L  LA  QL K R++     +   + T E L +LIE+ E D++L+  LM HLSV+PLT
Sbjct: 691  YDLKHLADVQLKKVREDYDDDLINSFYVTSERLFKLIEHTERDSYLTFSLMQHLSVVPLT 750

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            +QLT+I+GNLW ++LQ ARA+R E LLLH F  KKY+ PDK  + K+ K           
Sbjct: 751  KQLTSIAGNLWYRSLQNARAERNEMLLLHEFYGKKYLCPDKAPFSKDKK----------- 799

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                E+  NE+  F N+    +++K K+   Y+GGLV+EPK G YD  ILLLDFNSLYPS
Sbjct: 800  --QFEDYENENL-FGNEEVKGNNKKRKKA-QYSGGLVIEPKAGFYDTIILLLDFNSLYPS 855

Query: 920  IIQEYNICFTTVERSP-----------------DGLVPHLPSSKTT---GVLPELLKNLV 959
            IIQEYN+CFTTV R P                 D  V  LP    T    +LP +LKNLV
Sbjct: 856  IIQEYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEV-ELPDKGNTYKDAILPNVLKNLV 914

Query: 960  QRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
            Q+R++VK  +K  +  +K QQL+I+Q+A+KLTANSMYGCLGFS+SRF+AK +A LIT+ G
Sbjct: 915  QKRKIVKEQLKKETDPVKQQQLEIRQKAIKLTANSMYGCLGFSSSRFHAKAIAALITKTG 974

Query: 1019 REILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEID 1078
            RE L  T D+ +N L   V+YGDTDSIMI+SG  +I +A  +  ++ QEVN+ YKCLEI+
Sbjct: 975  RETLLKTKDIAENKLGFNVVYGDTDSIMINSGTTNIEEALKMGHRLKQEVNQHYKCLEIE 1034

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVI-ERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            +DGL+K +LLLKKKKYAA+KV+ F       +I E KGLDMVRRDW  L+K  GDF L Q
Sbjct: 1035 IDGLFKSLLLLKKKKYAALKVENFMSPDRKTIIKECKGLDMVRRDWCALAKNAGDFVLDQ 1094

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            ILS +  ED+V ++   L  + + M++ Q+ L++YVI K +T+    Y D K  PHV VA
Sbjct: 1095 ILSGQQREDIVLTLTEHLSNLGQRMKNNQIPLKEYVINKQITRALSEYHDTKALPHVAVA 1154

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
            LRLK  G S   +  + +PY+IC EQ   S     ++++A HPDE+    GK  +D+D+Y
Sbjct: 1155 LRLKNQGKSE--ADLNFIPYVICTEQDKKSQF---LSEKAYHPDEVLTSKGKIQLDVDWY 1209

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS---SDPSSSLLFAVGD 1313
             +QQI P++SRL   IEG   + +A C G+DP K++   S   S   +D ++ +  A+  
Sbjct: 1210 ITQQILPIISRLIEHIEGIEADFIAQCFGIDPKKYKYTSSIQKSNDINDDTAHIKKAILS 1269

Query: 1314 EE-----RYRGCEPLILSCPSCSSTFDCPAVCS---SICMSVSEKP 1351
            EE     + R    L + C SC    + P V     +I   V +KP
Sbjct: 1270 EETENKLKQRSIAYLKVVCFSCHLEQEFPGVFQKNGTISGLVCQKP 1315


>gi|116191701|ref|XP_001221663.1| hypothetical protein CHGG_05568 [Chaetomium globosum CBS 148.51]
 gi|88181481|gb|EAQ88949.1| hypothetical protein CHGG_05568 [Chaetomium globosum CBS 148.51]
          Length = 1474

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1589 (32%), Positives = 787/1589 (49%), Gaps = 217/1589 (13%)

Query: 17   AEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGF 76
            ++AS R    E L+ALR+ G+++ D+  Y ++    +Y+ V E++Y  +V R R     F
Sbjct: 2    SKASKRGRFAE-LRALRQSGKKNFDT--YEVEDAADLYEEVDENQYKKIV-RDRLNEDDF 57

Query: 77   IVDDDGLGYGDEGQEEDWSVAGLPSSSDDESL---DGQRSIKKQRIEKRGKKENNQNVRK 133
            +VDD+G GY D+G+EE W       S  D +L      R  KKQR E++ K+  + N R 
Sbjct: 58   VVDDNGEGYADDGREE-WDRVQTYDSESDGALPVRGKDRKSKKQRDEEQSKR--DANDRN 114

Query: 134  PNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF---APDEADRE 190
             +   T  A+                  K K  K +E +  ++++L E     P  A R 
Sbjct: 115  ISEYFTKGASKAQP--------------KPKVIKTEEDDKFLEDLLGEVDANVPVPAPRV 160

Query: 191  RRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKEN-SDLINNFVQIQNCDVVEESKE-- 247
             ++R  S+  +   +++  + + Q  T  T  +  + S  +   V +   D V  ++E  
Sbjct: 161  TKKRDRSAERRRNRALSPARESRQPATKKTKMLDGSASSPVATDVAMAEDDFVPPAEEDE 220

Query: 248  ----LKWESDNSTELTKRDNFVEVKEKVKDEVNE-------------------------D 278
                L  +  +    +      E + + K + NE                         +
Sbjct: 221  LPVPLDVDMSDPAPSSPAAKVAERRTQPKPDTNEYDDFDDDDDDMMEVGRTGAVAAASVN 280

Query: 279  VKECKKLNAKISTEKDPLLSATAGWKEV----SGGNMVLD----------EGKSGLNCQE 324
            +   +++   I  +  P+ S+ A   E     S  N + D          E +S +   +
Sbjct: 281  LSAARQIKKIIKPDPTPVTSSPAKGPETAVDASSWNGINDKLNVVSSSQPEARS-MGKMD 339

Query: 325  SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYA 382
             +  ++ DGSL  +  D  E       G+L LFGKV  K    H SC V V N+ R +Y 
Sbjct: 340  YKDAIEPDGSLNMFWTDYTEV-----HGSLCLFGKVLNKKTGHHVSCFVKVDNILRKLYF 394

Query: 383  IPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSP 442
            +P     +   + +  K  E+  +             + + +E+   +  +NV+ + +  
Sbjct: 395  LP-----RKHRVQRGVKTTEQVEM-------------MDVYSEVDTIMTKMNVNMHKIKT 436

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
              R+YAF   +IP    Y +K+ YP+  P +    KGE F  + GT++S  E F++ + V
Sbjct: 437  CTRKYAFELPDIPKKAQY-MKLLYPYTKPAIELGTKGETFSHVFGTNTSLFEQFVLWKNV 495

Query: 503  KGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
             GP WL I K +   A +  S C+ E+ VD+P+ + V   ++ + ++PP+T+ +I L+T+
Sbjct: 496  MGPCWLRI-KDADFGALKNASHCRLEVLVDNPEMVTVVEENEGM-DMPPLTMMSIALRTM 553

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
            FN + +  EI++ S        +     A   K P     FT+VR      FP+GF K A
Sbjct: 554  FNAKDNKQEILAISARIYEDVSLSDTTPAD--KLP--CRTFTLVRPQTNA-FPLGFEKLA 608

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
             +R  K GS  L  + S+  +L   + ++  +D DV++GH + G D  +LL+R  +    
Sbjct: 609  KER--KRGSVKLMKQESD--ILTFFLAQVDLVDPDVILGHQLEGVDYSILLNR--LYEKK 662

Query: 683  SSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREV- 738
            +  WS++GRL+RS  P    + G  +F           +AGRLLCD      + ++ +  
Sbjct: 663  THQWSRLGRLRRSAWPPSIGKVGGNVFAE------RQVMAGRLLCDLANEAGKSVMYQCQ 716

Query: 739  SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSV 795
            S+SLT++    L  D  R++V     LK +  + E L++ + + E D +    L F   +
Sbjct: 717  SWSLTEMCSRYLGGDIHRRDVDNESALKTWAVSKEGLIDYLSHAEADTYFISALAFRTQI 776

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LPLT+ LTN++GN W +TL G RA+R EY+LLHAF  K++I PDK  +       K R  
Sbjct: 777  LPLTKVLTNLAGNSWARTLTGTRAERNEYILLHAFHKKRFICPDKQPF-------KGRGR 829

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
               ED+       ED   D+          K+   Y GGLV EP++GLYDK++L++DFNS
Sbjct: 830  ADEEDQ-------EDGGADS----------KKKDKYKGGLVFEPERGLYDKFVLVMDFNS 872

Query: 916  LYPSIIQEYNICFTTVERS-----PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            LYPSIIQEYNICFTTV+RS      DG VP +P  K  G+LP+L+  LV RRR VK  MK
Sbjct: 873  LYPSIIQEYNICFTTVDRSFVSDDEDG-VPPVPEDKELGILPKLISELVDRRRQVKGLMK 931

Query: 971  TASGLKIQQL---DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
             A G+  +QL   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST D
Sbjct: 932  -AKGITPEQLATYDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTKD 990

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L +  ++L+VIYGDTDS+MI++ +D++A A  +      EVNK+YK LEID+D +++R+L
Sbjct: 991  LAEG-MSLQVIYGDTDSVMINANVDNVADAFKVGRAFKAEVNKRYKRLEIDIDNVFRRIL 1049

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   E +E KGLDM RR++  LS+++    L +ILS    E  +
Sbjct: 1050 LQAKKKYAAMNLVEVDGKFIEEMEVKGLDMKRREYCPLSRDISKRILDEILSGDDIELSI 1109

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + IH  L  +   MR   +A  KY+I   L K P+ YP+A + P VQVALR    G +  
Sbjct: 1110 QRIHEYLRDISSKMREQAIATSKYIILTQLGKSPKEYPNADSMPQVQVALRELARGKT-- 1167

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD V YII    G S  +S    +RA  P ++ K D     D+++Y  +QI P V R
Sbjct: 1168 MRKGDVVSYIIT---GDSKTTSEPAPKRAYTPQDVLKADSGLTPDVEWYLGKQIFPPVER 1224

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS----SLLFAVGDEERYRGCEPL 1323
            LCA+I GTS  +LAD LGLD  ++ +  +   SS         L   + D  R++ C  L
Sbjct: 1225 LCANIVGTSTAQLADNLGLDVRRYATNNTSNSSSSNRDVEIHPLESQIPDATRFQDCARL 1284

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
             L C +C +T     +  S   S    PS           + CP+C        +S   I
Sbjct: 1285 SLRCRACKTTAPFEGLLGS---SDRITPS----------GVSCPQC-----GTVLSTLSI 1326

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CN 1438
              QV+  A    + YY+G ++CDD +C   T  +++        G+ C   PR     C 
Sbjct: 1327 VAQVEAAARAQTARYYEGWLVCDDASCGNRTRQISV-------AGSRCLG-PRGLARDCQ 1378

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA--------------KIPLEKELNK 1484
            GR+  +  E  +Y QL YF  L D  R  +K+  +A              K+ +  E NK
Sbjct: 1379 GRMRYEMGEKAVYNQLLYFASLWDVDRAKKKLVATATEGGEGVPAGEARDKVLVLAEHNK 1438

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             R         + +  E+C   WV ++ +
Sbjct: 1439 TR--FGTVKGVMDKYLEKCGRQWVAMDTL 1465


>gi|189237191|ref|XP_967510.2| PREDICTED: similar to DNA polymerase alpha 180kD CG6349-PA [Tribolium
            castaneum]
 gi|270008175|gb|EFA04623.1| DNA polymerase alpha 180kD [Tribolium castaneum]
          Length = 1406

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1556 (32%), Positives = 806/1556 (51%), Gaps = 226/1556 (14%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIK-LENPIYDTVAE 59
            M+D+      +R+ R  ++S +A+A E+ K L+ G R       Y ++ LEN +YDTV E
Sbjct: 1    MEDDTSERRPKRQKR--DSSYKAKAFEKFKQLKSGLRNK-----YEVEELEN-VYDTVDE 52

Query: 60   DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRI 119
             EY   V  R+++     VDDDG GY ++G++             D+ LD   SI     
Sbjct: 53   KEYTKKVLDRQDDDWI--VDDDGSGYVEDGRD-----------IFDDDLD-HASIAAASS 98

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
            +K    +  +NV          A   G+  L  ++++  M  K K+EK  + +  + E+L
Sbjct: 99   KKNKGVKRKKNV----------AENAGRGNLQYLISN--MPSKKKEEKKLDQDDDLAELL 146

Query: 180  AE--------------FAP---DEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNST-- 220
             E              F+P    +A+++  R+ ++S  K  ++++      Q +  ST  
Sbjct: 147  QEINETPRESKAATSNFSPLSVKQAEKDYMRK-LTSIKKPVITLSRTPKAKQPLKISTEE 205

Query: 221  NSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK 280
            N  K   + I    +++  ++ + S E   E+  S E        EV E   D   +D  
Sbjct: 206  NHAKPTEETILTENKLEP-EITQASCEEIAETQASCE--------EVAETQSDGCFDDDL 256

Query: 281  ECKKLNAKISTEKDPLLSATAG-WKEVSGGNM----VLDEGKSGLNCQESEF---EVDDD 332
            +  +L    + +  P +      W+ +    +    V  + ++ ++ Q S+    ++DD 
Sbjct: 257  DLSQLEESEAEQSKPQIEEKQDLWENIESEMLKEWSVSQDTETTIDLQNSDIPLVKIDDK 316

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
                F+  DA+E       G + LFGK       TH SC V+++N+ R ++ +P      
Sbjct: 317  SVFRFFWWDAYED-PFIKPGVVVLFGKTYHTQTKTHVSCTVIIRNIDRRIFFLP------ 369

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
                 ++E++  +  ++        QDV      EI   +    + N+   PV ++YAF 
Sbjct: 370  -----RVEEEKSKKPVTS-------QDVY----AEINELMKTKGIKNFKARPVTKKYAFD 413

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
              E+P+  +YV ++ Y   DPP+    KG  F  + G+ SS LE+FL+ RK+KGP WL+I
Sbjct: 414  -LEVPSESDYV-EVRYAATDPPIDKTTKGRTFSRVFGSESSYLEIFLLDRKIKGPCWLNI 471

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            +  +  P     +WCK ++  D   D+ +   +    E PP+ VTA+N++  FN +  +N
Sbjct: 472  A--NPIPESNPSTWCKLQVNCDKLTDVTICEEA---IEPPPLVVTALNMRRAFNPKTGLN 526

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EIV  S+V      +D       ++K   + +    + L   +F +  + + T       
Sbjct: 527  EIVMLSLVTNVSYSVDKQAPTEAFQKHCCVFYCPDTQVLSSDLFTVMQDCKIT------- 579

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
               L    SE+ALLN  + +  KLDSD++VGH++ G  + VL  R    ++P+  +SK+G
Sbjct: 580  --TLQKMHSEKALLNYFITQFSKLDSDIVVGHDLQGHQISVLAERMFRHKIPN--FSKLG 635

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
            R+K+S   + +  + +F             GRL+CD    +++L+R  SY L  L +  L
Sbjct: 636  RIKKSTFSRHKIEKELF------------VGRLVCDVKTAAKELIRCRSYDLGSLCQAVL 683

Query: 751  ---NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
               ++ R ++ P DVLKMF++ E L++L+     D    +++M+ L+++PL  Q+T I+G
Sbjct: 684  KIKDEQRTDLEPDDVLKMFRSKEELLKLVSLTMQDTAFVLKIMYSLNIIPLALQITTIAG 743

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N+  KTL G R++R E+LLLHAF  K YIVPDK         +  + + G          
Sbjct: 744  NVMSKTLMGGRSERNEFLLLHAFSEKNYIVPDK---------SSGKKDFG---------- 784

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                           +   +   Y+GGLVL+PK G YDK+ILL+DFNSLYPSIIQEYNIC
Sbjct: 785  --------------EKTANKKATYSGGLVLDPKIGFYDKFILLMDFNSLYPSIIQEYNIC 830

Query: 928  FTTV--ERSPDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
            FTT+    + D +V  LP +    GVLP  +K LV+ RR VK  MK+A  S  +  Q DI
Sbjct: 831  FTTMPPNLAEDNMV--LPDATLPAGVLPTEIKKLVESRRAVKKLMKSADLSPDQRMQYDI 888

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q ALKLTANSMYGCLGF+NSRFYAK LA LIT +GREIL +T ++V+  LN EVIYGDT
Sbjct: 889  RQMALKLTANSMYGCLGFANSRFYAKNLAALITHKGREILTNTKEVVER-LNFEVIYGDT 947

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QF 1101
            DS+MI++ + D  +   I  K+ QE+NK Y+ +E+D+DG++K +LLLKKKKYAAV + + 
Sbjct: 948  DSLMINTNLVDFDQVAQIGTKIKQEINKLYRQVELDIDGVFKYLLLLKKKKYAAVTLSKD 1007

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
            K+G     IE KGLD+VRRDWS L+ E G F L+QILS++S E+   +I   L +++ED+
Sbjct: 1008 KEGRLKTDIEYKGLDIVRRDWSRLAAEAGKFVLNQILSDQSSENRFLNILTHLSQLREDL 1067

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL-KQSGYSTGCSAGDTVPYIICC 1220
            + G+V L   VITK L+K P+ YP+    PHVQVA+R  KQ G+     AGDTVPY+I C
Sbjct: 1068 QEGKVPLSLLVITKQLSKNPDQYPEDNTLPHVQVAIRYNKQGGHY---RAGDTVPYLI-C 1123

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            + GT + ++    QRA H +ELK  +    ID+ YY + QIHPVVSR+C  IE     ++
Sbjct: 1124 DDGTKNPAT----QRAYHIEELKNSET-LKIDVTYYLANQIHPVVSRICEPIEALDLVQI 1178

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSS--TFDCPA 1338
            +DCLG+D S  +    +  + +        +  E ++R  +  +  C  C S  T D P 
Sbjct: 1179 SDCLGVDSSNLRKVKVDDDNGEN------VIDPEIKFRNVDKFVFKCLVCESENTVDGPF 1232

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
               S  + V +K           +  RC   P +          I NQ+    + ++  +
Sbjct: 1233 ---SNNIPVLQK----------CQNARCKARPADYVP------FIQNQMTETINSYIEKF 1273

Query: 1399 YKGLMMCDDETCKYTTCSLNLRL-IGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            Y   M C+D  C    C   +R+ +  + R   C     CN  L++KY+   L+ Q+TYF
Sbjct: 1274 YLNEMYCEDPMC----CKETVRIPLSSSGRVPFC---QVCNSVLIKKYSGLSLFTQITYF 1326

Query: 1458 CHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             ++ D  + + KM  S ++ +EK  ++I+        TV+R  E C +  VK+ ++
Sbjct: 1327 QYIFDLTK-LSKMP-SLELQVEKAYHEIK-------ETVERRYEFCGFSTVKMENM 1373


>gi|328711134|ref|XP_003244454.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Acyrthosiphon
            pisum]
          Length = 1437

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1570 (32%), Positives = 794/1570 (50%), Gaps = 197/1570 (12%)

Query: 3    DEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEY 62
            ++ P  +  +R +  + S R EAL +LK L+  G +      Y ++    +Y+ ++E EY
Sbjct: 2    NDNPETSRPKRQKAGQTS-RFEALAKLKKLKSDGTKHK----YEVEPMQNVYEEISEQEY 56

Query: 63   DALVARRREEARGFIVDD-DGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
               V +R+++   +IVDD D  GY ++G+E            D+ S+  +    + +   
Sbjct: 57   TDRVVKRQQD--NWIVDDYDVDGYVEDGRE------IFDDDLDEASIVKEEKKGRGKKRS 108

Query: 122  RGKKENNQNVRKPNPSLTAAAAMM---GKQRLSAMLTSTAMFKKSKDEKVKESESVIDEV 178
            R  K  ++++   N  +    A M    K+ +   L    +      E  K   S    +
Sbjct: 109  RADKSFDEDLPSSNRDIQKMFANMPIKKKKEVPVNLDEDDILDDLIQELDKPGISRAPRL 168

Query: 179  LAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVT--NSTNSVKENSDLINNFVQI 236
            +     ++  RE + R    +  + V       N+ ++   N+  +++  S  +N+   +
Sbjct: 169  VHNKVTEKIKRENQTRGYLESFSTVVKSPRTPVNNIIIKTENTDENIESPSSKLNDSNDV 228

Query: 237  QNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPL 296
                 + ++KEL  E     EL   +    +K+++ DE  +D  E       I  EK  +
Sbjct: 229  NKN--IFQAKELNAEPIKKPELATEN---PIKQELFDESMDDCIEDFDFEEAIQAEKSFM 283

Query: 297  -LSATAGWKEVSGGNMVLDEGKSGL---NCQESE-------------FEVDDDGS--LPF 337
             L+  +  KE++   + +D   +     N QE E                D +G+    F
Sbjct: 284  ELTELSVKKELTKTEIKIDFEDTKWPIENVQEEEQVALPHDISSKLPLTSDKNGTQVFRF 343

Query: 338  YILDAHEQLSGANMGTLYLFGKVKAGS--THHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            + LDA E +     G ++LFGKVK  +  T+ SCCVVVKN++R ++ +P       +E+ 
Sbjct: 344  FYLDAFEDV-FKQPGVVFLFGKVKPVNFDTYVSCCVVVKNIERRMFLLPRNTTSDNEEV- 401

Query: 396  KLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIP 455
                              K+ DV      E  N      + N+    + ++YAF  A++ 
Sbjct: 402  ------------------KMVDVY----NEFNNLTDKYQIQNFKSRKITKKYAFDLADV- 438

Query: 456  AGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS--KF 513
            A E+  L+I Y    PPLP DL G+ F  + GT++S LEL L+ +K+KGP WL I   + 
Sbjct: 439  ADESEYLEIRYSASHPPLPEDLSGKTFSRVFGTNTSFLELLLLDQKIKGPCWLDIKIPQL 498

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
            S+ P    +SWCK E+     K+I+++ +    A  PP+ +  +N +  +N++   NEI+
Sbjct: 499  SNSP----MSWCKIEVLCLDMKNIQLAPT----ASPPPIVIMTLNPRITYNRKTKQNEII 550

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSH--FTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
              S +      ID          P  L +  F  + +     +P+ + +E      K G 
Sbjct: 551  IISCLVHTHFPIDQA-------PPSHLHNQFFCAISRPSNIPWPLRYQEEL----KKCGD 599

Query: 632  -NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
             + +    SERALL   + +L K+D D+++GH+I  + L  L+ R +  ++ +  WSKIG
Sbjct: 600  PSKIIKMDSERALLTFFLAKLSKIDPDMIIGHDICSYILSTLVGRLEANKIQN--WSKIG 657

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
            RL+R+  PK  KG+  F S  S      ++GRL+CDT + +++L++  SY L  L++  L
Sbjct: 658  RLRRTLFPK--KGK--FMSEKS-----VLSGRLICDTQISAKELIKARSYDLYSLSEQIL 708

Query: 751  NKDRKE---VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            N    E   +   +V  M+ +  SLM+LI++   D    M LM  ++VLPL  Q+T ++G
Sbjct: 709  NVKENEQFNLSDDEVSYMYCSAVSLMQLIKFTIMDTSCIMRLMCQMNVLPLALQITKVAG 768

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            NL  +TL G RA+R EYLLLHAF  K YI+PDK          K+RS +  ED NVEE  
Sbjct: 769  NLLSRTLIGGRAERNEYLLLHAFNEKGYILPDK--------QYKKRSMNKNED-NVEE-- 817

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                        N  + G++   Y GGLVL+PK G YDK ILL+DFNSLYPSIIQEYNIC
Sbjct: 818  -----------ENTKKNGRKKAQYLGGLVLDPKIGFYDKMILLMDFNSLYPSIIQEYNIC 866

Query: 928  FTTV-------ERSPDGLVPHLP----SSKTTGVLPELLKNLVQRRRMVKTWM---KTAS 973
            FTTV       +   D +   L      S   G+LP  +K+LV  RR VK  M   K ++
Sbjct: 867  FTTVSFRTLLAQEGDDEIAELLKLTPNQSVARGILPAEIKSLVDSRREVKKLMNDPKISA 926

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
             LK +Q +++Q ALKLTANSMYGCLGF++SRFYAKPLA LIT +GREIL ST  LV+  L
Sbjct: 927  TLK-EQYNLRQTALKLTANSMYGCLGFTHSRFYAKPLAALITAKGREILISTKALVEK-L 984

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            + +VIYGDTDS+MI+S   D  +   I  K+  EVNK YK +E+D+DG++K MLLLKKKK
Sbjct: 985  SFDVIYGDTDSLMINSNCVDYDQVMKIGYKIKAEVNKMYKQVELDIDGIFKYMLLLKKKK 1044

Query: 1094 YAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            YAA+ + +   G      E KGLD+VRRDWS LS+E G F L QILS++S E+ V +I  
Sbjct: 1045 YAAISISKLPSGEFITKEEIKGLDIVRRDWSQLSQEAGRFVLRQILSDQSPEERVSNICA 1104

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L K++ D     + L    I+KTLTK P+ Y D+K  PHV +A RL +   S     GD
Sbjct: 1105 QLEKLRVDCEENNIPLGLLAISKTLTKAPQDYSDSKALPHVAIAQRLNKQ--SIKFRQGD 1162

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            TV Y++ CE GT+  S+    QR  H DEL K +    ID  YY SQQIHPV+ RLCA +
Sbjct: 1163 TVSYVV-CEDGTNFASN----QRVYHIDEL-KNNTTLKIDFKYYLSQQIHPVIMRLCAPL 1216

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSS 1332
            E    + +A+ LGLDP+++Q++ ++T+  +        + D  R+  C+P    C  C +
Sbjct: 1217 EDIDAKMIAEYLGLDPAQYQNQRTKTIYENSLEENAIDLDDATRFSSCDPFKFKCLGCKT 1276

Query: 1333 TFD--CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP----GMIANQ 1386
              +   PA+          K +  + E++        +C        ISP    GM+ N 
Sbjct: 1277 EVEIFAPAI----------KTANGKLEFSL-ENCSNSEC-------YISPYKYIGMMENT 1318

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYT 1446
            +          +YK   +CDD TC Y T  +        E  T C      +G L ++Y+
Sbjct: 1319 LWSAIRKHTIKFYKSHYVCDDSTCDYKTKYIPR---TSDEICTQCE-----SGTLKKEYS 1370

Query: 1447 EADLYKQLTYFCHLLDTQRGI---EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERC 1503
               L  QL Y+  L D  + +    ++++S + PL    ++++       + VQ++ +  
Sbjct: 1371 VGQLLFQLRYYLFLFDIDKVLLRNREIQLSVEDPLYIAYSRLK-------AKVQKVLKHH 1423

Query: 1504 AYGWVKLNDI 1513
             + +V L  I
Sbjct: 1424 DFYYVNLKQI 1433


>gi|71001450|ref|XP_755406.1| DNA polymerase alpha catalytic subunit [Aspergillus fumigatus Af293]
 gi|66853044|gb|EAL93368.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
            fumigatus Af293]
          Length = 1462

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1583 (32%), Positives = 784/1583 (49%), Gaps = 220/1583 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ++ARA+ L  L+ALR  G++   +  Y I+ ++ I++ V ++ Y  ++ R R +   F+V
Sbjct: 2    SAARAK-LAELRALRAAGKKRLST--YEIEEQDDIFEEVDDEGYKKII-RDRLDQDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W+  VA   S SDDE L G+ ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNERVADYNSESDDEELPGRNKAAKRKREEEKQRKERINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF-APDEADRERRR 193
              +  AA+A   K  ++A                 E E+ + ++L E  A   A+    +
Sbjct: 117  FNTGPAASAPKPKPVVTA-----------------EDEAFMADLLGEVDANVVANHVPIQ 159

Query: 194  RSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESD 253
              + S  +  V + S    S+      +   ENS+ ++   Q  + +  ++   L    D
Sbjct: 160  NVIKSETRRKVRILSPPLASKPRNERISGKDENSEPVSQVNQAPDLEFEDDDGPLPTMDD 219

Query: 254  NS------------TELTKRDNFVEVKEKVKDEVNEDVKEC------------------- 282
                          +++ +R + V VK++  DE + D+ E                    
Sbjct: 220  GDVAMSDPMPSSPISKVVERKSNVNVKKEESDEEDNDLMEIAPATGQSEAKMTSVNMAGS 279

Query: 283  ------KKLN----AKISTEKDPLLSATAGWKEVSGGNMVLDEGKS------GLNCQESE 326
                  KK N    A  S  K P+    A W +V     VL    +       L  Q+  
Sbjct: 280  RPPPKIKKENYTTPASSSPAKAPVDVLNASWNDVRSKLNVLSSPATESRTFGKLRAQDV- 338

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIP 384
              +++DGSL  + LD  E       G+L LFGKVK   T  H S  V + N+ R ++ +P
Sbjct: 339  --IEEDGSLRMFWLDYTEV-----NGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLP 391

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                ++   +   E D              ++DV      E+   +  L V  + + P  
Sbjct: 392  REYRYKHGRVTDEEVD--------------MKDVY----EEVDEIMSRLKVGMHKIKPCT 433

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF   +IP    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ R V G
Sbjct: 434  RKYAFELPDIPKEAEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWRNVMG 492

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P WL I   +   A    SWCK+E  V  P  I     ++++ E PP+T+ ++  +T  N
Sbjct: 493  PCWLKIED-ADFTAVSNASWCKFECQVARPACITPVPDTENL-EPPPLTLMSLAFRTQLN 550

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +P+ F  E 
Sbjct: 551  VKENKQEILVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPLHFEAE- 602

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                ++        E SE+ LL++ +    K+D DVL+GH +   DL + L R +  + P
Sbjct: 603  ----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSIFLSRLKEKKTP 658

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W +IGRLKR E PK   KG   F           IAGRL+CD    +    +++  S
Sbjct: 659  G--WHRIGRLKRGEWPKSFNKGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 710

Query: 740  YSLTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++ +  L     R+E+     LK + T  E LM  + + + D +    L+  L +L
Sbjct: 711  WSLTEMCELYLGDGNTRQELDTEAALKTWATSKEGLMNFVNHCDADTYFIAALVLRLQML 770

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
             LT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K     
Sbjct: 771  SLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLQK----- 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              E++N             D   +D    K+   Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 822  -AEEKN------------QDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSL 868

Query: 917  YPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWM 969
            YPSIIQEYNICFTTV+R+          VP +PSS +  G+LP+L+  LV RRR VK  M
Sbjct: 869  YPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREVKKLM 928

Query: 970  KTASGL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K+ S    ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 929  KSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKE 988

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 989  LAESK-QLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFRRLL 1047

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    E V+
Sbjct: 1048 LHAKKKYAAINMTEVDGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVL 1107

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              +H+ L  + + MR  Q+ ++KYVI   L+K PE YP+ +  P  QVALR    G +  
Sbjct: 1108 NRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKT-- 1165

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + R
Sbjct: 1166 IRPNDVISYIVT--NGDSETSSLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIER 1223

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPL 1323
            LCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     L
Sbjct: 1224 LCAPIPGTDAVRLAECLGLDVRKYQINTSS--GSNQQNADIFPLESQIPDSVRFENAARL 1281

Query: 1324 ILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG 1381
             L+C SC   S F+     + +C                  T     CP +      +  
Sbjct: 1282 TLTCRSCKEKSIFEGLVASTHMC------------------TANGIVCPNQACQKPFTVL 1323

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCN 1438
             I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   R         C 
Sbjct: 1324 TIIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCL 1377

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQR----------GIEKMEISAKIPLEKELNKIRPV 1488
            GR+  +Y+E  +Y QL YF  L D  +          G +K  I+A +    E N+ R  
Sbjct: 1378 GRMTYEYSEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALV----EFNRTR-- 1431

Query: 1489 VALAASTVQRIRERCAYGWVKLN 1511
                   V    ++C   WV+++
Sbjct: 1432 FGTIKGVVDGYLKKCGRQWVEMD 1454


>gi|119481041|ref|XP_001260549.1| DNA polymerase alpha catalytic subunit, putative [Neosartorya
            fischeri NRRL 181]
 gi|119408703|gb|EAW18652.1| DNA polymerase alpha catalytic subunit, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1462

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1583 (32%), Positives = 785/1583 (49%), Gaps = 220/1583 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ++ARA+ L  L+ALR  G++   +  Y I+ ++ IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2    SAARAK-LAELRALRAAGKKRLST--YEIEEQDDIYEEVDDEGYKKII-RDRLDQDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W+  VA   S SDD+ L G+ ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNERVADYNSESDDDGLPGRSKAAKRKREEEKQRKEKINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE-ADRERRR 193
              +  AA+A   K  ++A                 E E+ + ++L E   +  A+    +
Sbjct: 117  FNTGPAASAPKPKPVVTA-----------------EDEAFMADLLGEVDTNVVANHIPTQ 159

Query: 194  RSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESD 253
              + S  +  V + S    S+      +   ENS+ ++   Q  + +  ++   L    D
Sbjct: 160  NVIKSETRRKVRILSPPLASKPRNERISRKDENSEPLSPVNQAPDLEFEDDDGPLPTMDD 219

Query: 254  NS------------TELTKRDNFVEVKEKVKDEVNEDVKEC------------------- 282
                          +++ +R +   VK++  DE + D+ E                    
Sbjct: 220  GDVAMSDPMPSSPISKVVERKSNANVKKEESDEEDNDLMEIAPATGQSEAKMTSVNMAGS 279

Query: 283  ------KKLN----AKISTEKDPLLSATAGWKEVSGGNMVLDEGKS------GLNCQESE 326
                  KK N    A  S  K P+    A W +V     VL    +       L  Q+  
Sbjct: 280  RPPPKIKKENYATPANSSPAKAPVDVLNASWNDVRSKLNVLSSPATESRTFGKLRAQDV- 338

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIP 384
              +++DGSL  + LD  E       G+L LFGKVK   T  H S  V + N+ R ++ +P
Sbjct: 339  --IEEDGSLRMFWLDYTEV-----NGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLP 391

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                ++   +   E D              ++DV      E+   +  L V  + + P  
Sbjct: 392  REYRYKHGRVTDEEVD--------------MKDVY----EEVDEMMSRLKVGMHKIKPCT 433

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF   +IP    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ + + G
Sbjct: 434  RKYAFELPDIPKEAEY-LKLLYPYDKPTLPMETKGETFSHVFGTNTSLFEQFVLWKNIMG 492

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P WL I   +   A    SWCK+E  V  P  I     ++++ E PP+T+ ++  +T  N
Sbjct: 493  PCWLKIED-ADFTAVNNASWCKFECQVARPASITPVPDTENL-EPPPLTLMSLAFRTQLN 550

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +P+ F  E 
Sbjct: 551  VKENKQEILVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPLHFEAE- 602

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                ++        E SE+ LL++ +    K+D DVL+GH +   DL +LL R +  + P
Sbjct: 603  ----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLSRLKEKKTP 658

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W +IGRLKR E PK   KG   F           IAGRL+CD    +    +++  S
Sbjct: 659  G--WHRIGRLKRGEWPKSFNKGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 710

Query: 740  YSLTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++ +  L     R+E+     LK + T  E LM  + + + D +    L+  L +L
Sbjct: 711  WSLTEMCELYLGDGNTRQELDTEAALKTWATSKEGLMNFVNHCDADTYFIAALVLRLQML 770

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
             LT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K     
Sbjct: 771  SLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLQK----- 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
             VE++N             D   +D    K+   Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 822  -VEEKN------------QDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSL 868

Query: 917  YPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWM 969
            YPSIIQEYNICFTTV+R+          VP +PSS +  G+LP+L+  LV RRR VK  M
Sbjct: 869  YPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREVKKLM 928

Query: 970  KTASGL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K+ S    ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 929  KSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKE 988

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 989  LAESK-QLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFRRLL 1047

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAAV +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V+
Sbjct: 1048 LHAKKKYAAVNMTEVDGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEVLSGEDQELVL 1107

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              +H+ L  + + MR  Q+ ++KYVI   L+K PE YP+ +  P  QVALR    G +  
Sbjct: 1108 NRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKT-- 1165

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + R
Sbjct: 1166 IRPNDVISYIVT--NGDSETSSLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIER 1223

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPL 1323
            LCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     L
Sbjct: 1224 LCAPIPGTDAVRLAECLGLDVRKYQINTSS--GSNQQNADIFPLESQIPDSVRFENAARL 1281

Query: 1324 ILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG 1381
             L+C SC   S F+     + +C                  T     CP +      +  
Sbjct: 1282 TLTCRSCKEKSIFEGLVASTHMC------------------TANGIVCPNQACQKPFTVL 1323

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCN 1438
             I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   R         C 
Sbjct: 1324 TIIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCL 1377

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQR----------GIEKMEISAKIPLEKELNKIRPV 1488
            GR+  +Y+E  +Y QL YF  L D  +          G +K  I+A +    E N+ R  
Sbjct: 1378 GRMTYEYSEKQMYNQLLYFAGLWDVDKAKANAQKEASGEKKDSIAALV----EFNRTR-- 1431

Query: 1489 VALAASTVQRIRERCAYGWVKLN 1511
                   V    ++C   WV+++
Sbjct: 1432 FGTIKGVVDGYLKKCGRQWVEMD 1454


>gi|159129478|gb|EDP54592.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1462

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1583 (32%), Positives = 784/1583 (49%), Gaps = 220/1583 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ++ARA+ L  L+ALR  G++   +  Y I+ ++ I++ V ++ Y  ++ R R +   F+V
Sbjct: 2    SAARAK-LAELRALRAAGKKRLST--YEIEEQDDIFEEVDDEGYKKII-RDRLDQDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W+  VA   S SDDE L G+ ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNERVADYNSESDDEELPGRNKAAKRKREEEKQRKERINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDE-ADRERRR 193
              +  AA+A   K  ++A                 E E+ + ++L E   +  A+    +
Sbjct: 117  FNTGPAASAPKPKPVVTA-----------------EDEAFMADLLGEVDTNVVANHVPIQ 159

Query: 194  RSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESD 253
              + S  +  V + S    S+      +   ENS+ ++   Q  + +  ++   L    D
Sbjct: 160  NVIKSETRRKVRILSPPLASKPRNERISGKDENSEPVSQVNQAPDLEFEDDDGPLPTMDD 219

Query: 254  NS------------TELTKRDNFVEVKEKVKDEVNEDVKEC------------------- 282
                          +++ +R + V VK++  DE + D+ E                    
Sbjct: 220  GDVAMSDPMPSSPISKVVERKSNVNVKKEESDEEDNDLMEIAPATGQSEAKMTSVNMAGS 279

Query: 283  ------KKLN----AKISTEKDPLLSATAGWKEVSGGNMVLDEGKS------GLNCQESE 326
                  KK N    A  S  K P+    A W +V     VL    +       L  Q+  
Sbjct: 280  RPPPKIKKENYTTPASSSPAKAPVDVLNASWNDVRSKLNVLSSPATESRTFGKLRAQDV- 338

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIP 384
              +++DGSL  + LD  E       G+L LFGKVK   T  H S  V + N+ R ++ +P
Sbjct: 339  --IEEDGSLRMFWLDYTEV-----NGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLP 391

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                ++   +   E D              ++DV      E+   +  L V  + + P  
Sbjct: 392  REYRYKHGRVTDEEVD--------------MKDVY----EEVDEIMSRLKVGMHKIKPCT 433

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF   +IP    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ R V G
Sbjct: 434  RKYAFELPDIPKEAEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWRNVMG 492

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P WL I   +   A    SWCK+E  V  P  I     ++++ E PP+T+ ++  +T  N
Sbjct: 493  PCWLKIED-ADFTAVSNASWCKFECQVARPACITPVPDTENL-EPPPLTLMSLAFRTQLN 550

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +P+ F  E 
Sbjct: 551  VKENKQEILVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPLHFEAE- 602

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                ++        E SE+ LL++ +    K+D DVL+GH +   DL + L R +  + P
Sbjct: 603  ----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSIFLSRLKEKKTP 658

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W +IGRLKR E PK   KG   F           IAGRL+CD    +    +++  S
Sbjct: 659  G--WHRIGRLKRGEWPKSFNKGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 710

Query: 740  YSLTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++ +  L     R+E+     LK + T  E LM  + + + D +    L+  L +L
Sbjct: 711  WSLTEMCELYLGDGNTRQELDTEAALKTWATSKEGLMNFVNHCDADTYFIAALVLRLQML 770

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
             LT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K     
Sbjct: 771  SLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLQK----- 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              E++N             D   +D    K+   Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 822  -AEEKN------------QDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSL 868

Query: 917  YPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWM 969
            YPSIIQEYNICFTTV+R+          VP +PSS +  G+LP+L+  LV RRR VK  M
Sbjct: 869  YPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREVKKLM 928

Query: 970  KTASGL--KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K+ S    ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 929  KSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKE 988

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 989  LAESK-QLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFRRLL 1047

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    E V+
Sbjct: 1048 LHAKKKYAAINMTEVDGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVL 1107

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              +H+ L  + + MR  Q+ ++KYVI   L+K PE YP+ +  P  QVALR    G +  
Sbjct: 1108 NRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKT-- 1165

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + R
Sbjct: 1166 IRPNDVISYIVT--NGDSETSSLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIER 1223

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPL 1323
            LCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     L
Sbjct: 1224 LCAPIPGTDAVRLAECLGLDVRKYQINTSS--GSNQQNADIFPLESQIPDSVRFENAARL 1281

Query: 1324 ILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG 1381
             L+C SC   S F+     + +C                  T     CP +      +  
Sbjct: 1282 TLTCRSCKEKSIFEGLVASTHMC------------------TANGIVCPNQACQKPFTVL 1323

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCN 1438
             I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   R         C 
Sbjct: 1324 TIIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCL 1377

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQR----------GIEKMEISAKIPLEKELNKIRPV 1488
            GR+  +Y+E  +Y QL YF  L D  +          G +K  I+A +    E N+ R  
Sbjct: 1378 GRMTYEYSEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALV----EFNRTR-- 1431

Query: 1489 VALAASTVQRIRERCAYGWVKLN 1511
                   V    ++C   WV+++
Sbjct: 1432 FGTIKGVVDGYLKKCGRQWVEMD 1454


>gi|398405728|ref|XP_003854330.1| hypothetical protein MYCGRDRAFT_99627 [Zymoseptoria tritici IPO323]
 gi|339474213|gb|EGP89306.1| hypothetical protein MYCGRDRAFT_99627 [Zymoseptoria tritici IPO323]
          Length = 1478

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1231 (35%), Positives = 635/1231 (51%), Gaps = 131/1231 (10%)

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            +S+  ++DDGSL F+  D  E       G+L LFGKVK     +  S  V V N+ R +Y
Sbjct: 329  DSQDAIEDDGSLRFFWTDYTEV-----NGSLCLFGKVKNRKDGSFVSAFVKVDNILRKLY 383

Query: 382  AIPNGPLF----QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSN 437
             +P    +    +TDE +   KD  E   S M+ +K                     V+ 
Sbjct: 384  FLPRENRYRRGRETDEEIDF-KDVYEEVDSIMSRQK---------------------VTM 421

Query: 438  YIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFL 497
            + +    R+YAF    IP   +Y LK+ YP+  P L  DL GE F  + GT+++  E F+
Sbjct: 422  HKIKQSSRKYAFELPGIPREADY-LKLLYPYDKPALSMDLTGETFSHVFGTNTNLFEQFV 480

Query: 498  VKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAI 557
            + + + GP WL I   +   A    SWCK E+ V SP+D   +       E PP+T+ ++
Sbjct: 481  MWKNIMGPCWLKIEN-ADFNAVNNASWCKLELQVVSPRDSITTMGDSDNLEAPPMTLMSL 539

Query: 558  NLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMG 617
             L+TVFN++++ NEI+ ASV       +     A   K P  L   T++R    G +P+G
Sbjct: 540  ALRTVFNQKENKNEILVASVRFYENVSLSDTTPAE--KIPSRL--ITIMRP--NGDYPLG 593

Query: 618  FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ 677
            F  EA   N K     +  E +E  +L+ L+  + K D D ++GH +   D  +LL R +
Sbjct: 594  FKAEAEKANHK-----IQMERNEAGVLSMLLAVMQKYDPDAIMGHRLDDVDYSILLSRMR 648

Query: 678  VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE 737
              R P   W +IGRLKR++ PK   G+   G G+        AGRLLCD      D+ + 
Sbjct: 649  ERRTPG--WHRIGRLKRNDWPK-NVGK---GGGSFFAERHLAAGRLLCD---LGNDMGKS 699

Query: 738  V-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFH 792
            +     S++L ++    LN  RKE+     L + +T E LM  ++  E D +    L   
Sbjct: 700  MMSNCQSWTLDEMVSLYLNGMRKEIDNEKALALAETREGLMNYVKMCEVDTYYVAALALK 759

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
              +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK          K 
Sbjct: 760  TQLLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKV-------WGKG 812

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGG------LVLEPKKGLYDK 906
             +N  +ED                   N++ +G+ G            LV EP+KGLYDK
Sbjct: 813  ATNKKLED-------------------NENVEGEEGADAKKKDKYKGGLVFEPEKGLYDK 853

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERS----PDGLVPHLPS-SKTTGVLPELLKNLVQR 961
            +IL++DFNSLYPSIIQEYNICFTT+ER      D  VP +P  +   G+LP L+K LV R
Sbjct: 854  FILVMDFNSLYPSIIQEYNICFTTIERGHLTEEDEKVPEVPDDTANKGILPRLIKTLVSR 913

Query: 962  RRMVKTWMKTASGLKIQQ--LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
            RR VK  MK  S  + Q+   D++QQALKLTANSMYGCLG++ SRFYA+PLA L T +GR
Sbjct: 914  RREVKKLMKDKSATEDQRKTWDVKQQALKLTANSMYGCLGYTKSRFYARPLAALTTAKGR 973

Query: 1020 EILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
            EIL+ST DL ++   L VIYGDTDS+MI++  D++  A  +  +  + VN++Y+ LEI++
Sbjct: 974  EILQSTKDLAESAHALRVIYGDTDSVMINTNADNVLDALKMGKEFQKSVNERYELLEIEI 1033

Query: 1080 DGLYKRMLLLKKKKYAAVK-VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            D +++R+LL  KKKYAA+  VQ  D    E ++ KGLDM RR++  LSK+     L  +L
Sbjct: 1034 DHIFRRLLLHAKKKYAAMTMVQKDDNTWIEKMDVKGLDMRRREYCQLSKDTSQALLDFLL 1093

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            S    E VV  IH+ L  + E MR+ ++   KY I   L K P+ YP+  + P VQVAL+
Sbjct: 1094 SGEEPEKVVAQIHDYLRTLSEKMRNNEIPKHKYTIYTQLGKNPKDYPNGGSMPSVQVALK 1153

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
                G      A D + ++IC   G SSG +   A+ A   DE+   D   + D+DYY +
Sbjct: 1154 RLAKGKQ--VKAKDVMAFVIC---GNSSGVAENAAKNAHDLDEVLARDSPLVPDVDYYLA 1208

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGDEER 1316
            +QI P V RLCA I GT+   LA+CLGLD SK++  S    +  ++  ++L   + D  R
Sbjct: 1209 KQILPPVERLCAPIGGTNISLLAECLGLDTSKYRVSSASRSSEQTNEITTLESQIPDHIR 1268

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
            ++ CEPL L C  C   F+   +         E+P  P        T     CP      
Sbjct: 1269 FKDCEPLHLLCLGCKHHFEFRGLSQPPPDPSDEQPLTPLAAL----THDGLACPRSNCKS 1324

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPN 1433
             IS   ++ Q++ Q     S YY   + CDD  C   T  +++   R +G   +G     
Sbjct: 1325 AISTLTLSAQLEHQIRTHTSRYYSAWLTCDDAACGARTRQMSVYGHRCLG--PKGLAYG- 1381

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAK-IPLEKELNKIRPVVALA 1492
               C+GR+  +Y+E  LY QL Y   L D  R +EKME     + +E E  K   V  +A
Sbjct: 1382 ---CSGRMAFEYSEKALYNQLLYLQGLFDVDRSLEKMENEKSLVKVEGETEKREKVKVMA 1438

Query: 1493 A----------STVQRIRERCAYGWVKLNDI 1513
                         V++  ER  +GWV ++ +
Sbjct: 1439 GLNRERFGVCRDVVKQYLERSGWGWVSMDSL 1469


>gi|452839534|gb|EME41473.1| hypothetical protein DOTSEDRAFT_176630 [Dothistroma septosporum
            NZE10]
          Length = 1475

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1571 (32%), Positives = 777/1571 (49%), Gaps = 186/1571 (11%)

Query: 21   ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
            +RA+ L +L+ALR  G+ + +   Y ++   PIY+TV ++ Y  +V R R +   F+VDD
Sbjct: 4    SRADRLAQLRALRAAGKTAFND--YEVQEAEPIYETVDDEGYKKVV-RSRLDQDDFVVDD 60

Query: 81   DGLGYGDEGQEEDW-----------SVAGLPSSSD------DESLDGQRSIKKQRIEKRG 123
            +G GY D+G+E DW           S   LP +S       ++  D Q  + K  I K  
Sbjct: 61   NGEGYADDGRE-DWQDERQAMDDSESDGDLPVNSKAAKRKREDDADRQEKLNKG-ISKYF 118

Query: 124  KKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFA 183
             ++      KP P  TA         L  + T+      S  +++K ++     VL+   
Sbjct: 119  NQKTTSAAPKPRPVRTAEDDAFMADLLGEVDTNIQRRAPSYGKQIKSNDRRKTRVLS--- 175

Query: 184  PDEADRERRR-RSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD--LINNFVQIQNCD 240
            P   DRE    R+   + K  V         Q     T  V+ + D  + +         
Sbjct: 176  PPLEDRENASYRAKDPSKKQIVDTPPAPQAGQ--DEDTYFVQPDDDVPMSDPLPSSPAAK 233

Query: 241  VVEESKELKWESDNSTELTKRDNFVEVKEKVKDE----VNEDVKECKKLNAKISTEKDPL 296
             VE  +++K      TE  + D+ +E+ E          N +++  + +   + T     
Sbjct: 234  AVERKEKMK------TEDAEEDDLMEIAEVTGSSNLQTANVNIRGTRPVPKMVKTSYPTP 287

Query: 297  LSATAGWKEVSGGNMV-LDEGKSGLNCQES-------------EFEVDDDGSLPFYILDA 342
             S++         +M  +D     LN   S             +   +DDGSL F+  D 
Sbjct: 288  DSSSPTRALTEDVDMTAIDNVAQKLNILSSPAAEPAMAGKLAAKDACEDDGSLRFFWTDY 347

Query: 343  HEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
             E       G+L LFGKVK     +  SC V V N+ R +Y +P     +      +E D
Sbjct: 348  TEV-----NGSLCLFGKVKNRKNDSFVSCFVKVDNIMRKLYFLPR----ENRRKHGVETD 398

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLN-VSNYIVSPVKRRYAFGQAEIPAGEN 459
             E               V +G+  E  + L+  + VS + + P  R+YAF    IP    
Sbjct: 399  EE---------------VDMGMVYEEVDGLMTKHRVSMHKIKPCTRKYAFELPGIPKEAE 443

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y LK+ YP+   PLP D++GE F  + GT+++  E F++ + + GP WL I   +   A 
Sbjct: 444  Y-LKLLYPYDKQPLPMDMQGETFSHVFGTNTNMFEQFVMWKNIMGPCWLQIDN-ADFNAV 501

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
               SWCK E+ V+ P +I V   S ++ + PP+T+ ++ L+T FN++++ NEI+ ASV  
Sbjct: 502  NNASWCKLELQVNKPNEITVMGESDNL-DAPPLTLMSLALRTTFNQKENKNEILVASVRF 560

Query: 580  CHKAKI-DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
             +   + DT    +  + P  L  FT++R    G +P+GF  +A     K G +++  E 
Sbjct: 561  YNDVGLADT---TAPERIPSRL--FTIMRP--HGEYPVGFKPKA----EKQG-HMIKMER 608

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E ALL+ L+  +   D D ++GH +   D ++LL R +  + P   W +IGRLKR + P
Sbjct: 609  NEAALLSMLLAIIGNHDPDAIIGHRLDDVDFNILLSRMRDRKTPG--WHRIGRLKRGDWP 666

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD 753
            K   G+   G G+        AGRLLCD    + D+ + +     S+SL ++    L+  
Sbjct: 667  K-NVGK---GGGSFYVERHLAAGRLLCD---LANDMGKSIMTNCQSWSLDEMVGLYLDGT 719

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            RKE+     L M  T E L+  ++  E D +    +     +LPLT+ LTN++GN W +T
Sbjct: 720  RKEIDNERALAMAATPEGLLNFVKMCEIDTYYIAAIALKRQLLPLTKVLTNLAGNSWART 779

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G RA+R EY+LLH F   KYI PDK          K  +N  +E+ N E    +D   
Sbjct: 780  LSGTRAERNEYILLHEFYRNKYICPDKV-------FGKGAANKRLEEDNPEGEEGDDKKK 832

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
             +                   LV EP+KGLYD +IL++DFNSLYPSIIQEYNICFTTV R
Sbjct: 833  KDKFKGG--------------LVFEPEKGLYDNFILVMDFNSLYPSIIQEYNICFTTVNR 878

Query: 934  SP----DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQA 986
            S     D  +P +P   +  G+LP L++ LV RRR VK  MK  S  + Q+   D++QQA
Sbjct: 879  SEITEEDEKIPEVPDDTSNKGILPRLIRTLVSRRREVKKLMKDKSTTEDQRNTWDVKQQA 938

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLG++ SRFYA+PLA L T +GREIL+ST DL ++   L VIYGDTDS+M
Sbjct: 939  LKLTANSMYGCLGYTKSRFYARPLAALTTSKGREILQSTKDLAESAHALRVIYGDTDSVM 998

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
            +++  D+I  A  +  +  + VN+KY+ LEI++D +++R+LL  KKKYAA+++   DG  
Sbjct: 999  VNTNADNILDAIKMGKEFQKSVNEKYELLEIEIDHIFRRLLLHAKKKYAAIQMVEADGGV 1058

Query: 1107 Y-EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
            + E ++ KGLDM RR++  LSK+     L+ +LS    E  V  IH+ L  + E MR   
Sbjct: 1059 WKEKLDVKGLDMKRREYCQLSKDTSKELLNYLLSGEESEVAVSKIHDYLRSLGEKMRQHA 1118

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            +   KY I   L K P+ YP++ + P VQVAL+    G      A D + ++IC   G S
Sbjct: 1119 IPPHKYTIYTQLGKDPKEYPNSNSMPAVQVALKKIAKG--KPVKAKDVMAFVIC---GNS 1173

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
            +G++   A+ A   DE+   D   + D+DYY  +QI P V RLCA I GT+   LA+CLG
Sbjct: 1174 AGNNETAAKNAYELDEVMAKDSGLVPDVDYYLHKQILPPVERLCAPISGTNVTLLAECLG 1233

Query: 1286 LDPSKFQ----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
            LD SK++    SK +E   S+  + L   + D  R++ CE L L C  C   F+      
Sbjct: 1234 LDTSKYRVSGASKAAE--QSNEITRLESQIPDHIRFKDCEALELLCLGCKHHFE------ 1285

Query: 1342 SICMSVSEKPSKPETEYNFWRTLRCP--KCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
                 ++  P   ET    +  L      CP      +I+   ++ Q+++Q     S YY
Sbjct: 1286 --YHGLNYTPPSDETPLVPFGILTNDGLACPRGDCRKKITTLTLSAQLEQQIRRHTSKYY 1343

Query: 1400 KGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
               ++CDD  C   T  +++   R +G   +G        C+GR+  +Y+E  LY QL Y
Sbjct: 1344 SAWLICDDPACGMRTRQMSVYGHRCLG--PKGLAY----GCSGRMSLEYSEKALYNQLLY 1397

Query: 1457 FCHLLDTQRGIEKMEISA--------------KIPLEKELNKIRPVVALAASTVQRIRER 1502
               + DT + +EKM  +               K  +   +NK R  + L    V+   ++
Sbjct: 1398 LQGIFDTDKMVEKMSAAGGSVKVDSAEGEKRDKTKVLAGMNKQRFGICL--EVVKAYLDK 1455

Query: 1503 CAYGWVKLNDI 1513
             A+GWV +  +
Sbjct: 1456 SAWGWVSMESL 1466


>gi|357608358|gb|EHJ65949.1| putative DNA polymerase alpha catalytic subunit [Danaus plexippus]
          Length = 1477

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1538 (33%), Positives = 785/1538 (51%), Gaps = 196/1538 (12%)

Query: 5    QPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDA 64
            + +   R + +  + + R  ALE+LK L+  G +    V    +LEN +YD V E EY  
Sbjct: 3    ESLATSRAKRQKVDKTGRLSALEKLKQLKGKGSKHKYDVD---ELEN-VYDLVDESEYSN 58

Query: 65   LVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPS---SSDDESLDGQRSIKKQRIEK 121
             V +R+E+     ++DDG GY ++G+E         +     + E+  G +   K   + 
Sbjct: 59   RVLQRQEDD---WIEDDGTGYVEDGREIFDDDEIDDTYVAKDNKETGRGHKRKAKVAPQP 115

Query: 122  RGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE 181
             GK     N+R          AM  K++  A ++   +      +    + S+  + L  
Sbjct: 116  AGKG----NIR------NLIGAMPNKKKEDAKISDDNILSDIMSDLDGTTSSIAKQKLVV 165

Query: 182  FAPDEADRERRR-----RSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKEN---------- 226
               +  D  +R      +++SS++K       VK    +V +  N  ++N          
Sbjct: 166  PKKNIVDSSKRDAQNYFKNLSSSVKK--PTPPVKKEETVVVDVDNVAEDNIKPPVIDQEK 223

Query: 227  ----SDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNF--------VEVKEK---- 270
                + LI+  ++ +    VEES     E   + ++   D+F        V +K++    
Sbjct: 224  PKKSTWLIDKEIKKE----VEESPSQIIEEFATQDIDFGDDFSNDAELPQVPIKKEATMT 279

Query: 271  -VKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEV 329
             +  +V ED KE   + + + TE   L + ++ W +     +V  +    L  Q+++   
Sbjct: 280  DILQDVAEDFKEDFDIFS-VKTEPKELKALSSNWSQNDNQVVVNIQSDVQLPLQKNK--- 335

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH-----SCCVVVKNMQRCVYAIP 384
            D D  L FY LDA E       G +YLFGKV    +       SCC+VVKN+ R ++ +P
Sbjct: 336  DGDQVLKFYWLDAWED-KYVKPGVVYLFGKVYVNPSKKKEGCASCCLVVKNVNRQLFLLP 394

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL--NLNVSNYIVSP 442
                              E ++ P+      Q+V +    E  N  +   + +  +    
Sbjct: 395  -----------------REYKLDPITLEATDQEVTMMDVYEEFNNCVASEIGLKEFKSRK 437

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
            V + Y F   +IP+  +Y L++ Y    P  P   K   F  + GT++S+LE FL+ RK+
Sbjct: 438  VTKNYCFNLPDIPSQCDY-LEVKYSATFPIPPVGKKYLTFSHIFGTNTSSLESFLLDRKI 496

Query: 503  KGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
            KGP WL +    S  A  +VSWCK E + D  +++ V  +   + E PP+ +  +N++TV
Sbjct: 497  KGPCWLEVKNAESVQA--KVSWCKLEASCDKMENVAVIRNDSDL-EPPPIVIATLNMRTV 553

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
             + +    +I+  S +  +   I  P     + +     HF V+ K +  ++P+   ++ 
Sbjct: 554  SDPKTSKTKILMMSCLAHNSFPIHKPPPNPPFHQ-----HFCVMTKCND-MWPIDLKQQM 607

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
              +  +A     C   +ER LLN  M++ +KLD D++VGH++ GF  D+L+      R+P
Sbjct: 608  --QQYRATKLTKC--DNERELLNYFMVQFWKLDPDLVVGHDLQGFQQDLLIGNILDLRIP 663

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL 742
            +  WS++GRLKRS  P+ +     F +       S   GRL+CD  L + +L+R  S+ L
Sbjct: 664  N--WSRLGRLKRSVAPQKK-----FAA------RSAFLGRLVCDIKLSAMELIRARSFDL 710

Query: 743  TQLAKTQLNK---DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
              L  + L     +R +V   D+ +  ++   L++L+     DA   +++M  L+V+PL 
Sbjct: 711  DSLCVSVLKMKEGERIDVSIEDLPRYNESSSDLLQLVSLSMQDASYILKIMCELNVIPLA 770

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             Q+T I+GN+  +TL G R++R E+LLLHAF  K YIVPDK  Y K+             
Sbjct: 771  LQITQIAGNIMSRTLMGGRSERNEFLLLHAFTEKNYIVPDKI-YGKKA------------ 817

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                    + D +  ++  +   ++ K+  AYAGGLVL+PKKG YDK ILL+DFNSLYPS
Sbjct: 818  --------DGDDDEQDEAGNVSKKQAKKKAAYAGGLVLDPKKGFYDKLILLMDFNSLYPS 869

Query: 920  IIQEYNICFTTVER----SPDGLVPHL--PSSKTT-GVLPELLKNLVQRRRMVKTWMKT- 971
            IIQEYNICFTT++R    S D  + +L  P+  T  GVLP  ++ LV+ RR VK  MK+ 
Sbjct: 870  IIQEYNICFTTIKRKNGASSDDDINNLVLPAPNTEFGVLPTQIRKLVESRREVKRLMKSP 929

Query: 972  --ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              AS L +Q  +I+Q ALKLTANSMYGCLGF++SRFYAKPLA L+T +GREIL  T ++V
Sbjct: 930  DLASELYMQ-YNIRQMALKLTANSMYGCLGFTHSRFYAKPLAALVTMKGREILMDTKEIV 988

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            Q  LN EV+YGDTDS+MI++   D      I   + +E+NKKYK +E+D+DG++K +LLL
Sbjct: 989  QK-LNYEVVYGDTDSLMINTNCLDYDYVFKIGNDLKREINKKYKQIELDIDGVFKYLLLL 1047

Query: 1090 KKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            KKKKYAAV V + K G      E KGLD+VRRDWS L+ E G F L+QILSE++ ++ +E
Sbjct: 1048 KKKKYAAVVVSKSKSGEFIYNQEHKGLDIVRRDWSQLAAEAGKFILTQILSEQTADERLE 1107

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            SI N L K++ED+ + ++ L    ITK LTK P  Y D  NQPHVQVALRL  S  S   
Sbjct: 1108 SIQNHLNKLKEDLVNSKMPLSLLTITKQLTKNPNEYADKNNQPHVQVALRL-NSKNSRRF 1166

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD VPYII CE GT++ ++    QRA H +ELK  +    +D  YY + Q+HPV+SR+
Sbjct: 1167 KKGDIVPYII-CEDGTANSAT----QRAYHIEELKNSE-HLSVDYKYYLAHQLHPVISRI 1220

Query: 1269 CASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCP 1328
            C  IEG  P R+ADCLGLDPS ++    + +S+  +  +     D+E+YR C+       
Sbjct: 1221 CEPIEGLDPARVADCLGLDPSGYRQITKKEISNTDTYEV---ENDKEKYRYCKEF----- 1272

Query: 1329 SCSSTFDCPAVCSSICMSVSEKPSKPETE-YNFWRTLRCPKCPEEVEAGRISP----GMI 1383
                TF C          + +   + E E   F    +  KC        + P      I
Sbjct: 1273 ----TFICVNEQCRTENRIRDTFRQVEKESVTFLERCQNEKCA-------VKPIDYLACI 1321

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC----NG 1439
             NQ+  Q   + S YY G + C+D  C Y +  L           T    YP C     G
Sbjct: 1322 QNQLSLQMRQYHSEYYTGWLACEDPACGYRSPRL---------PQTFAAGYPLCRLCEKG 1372

Query: 1440 RLVRKYTEADLYKQLTYFCHLLDTQR-GIEKMEISAKI 1476
             + R+YTE DLY Q+ +F  L D  +    K +IS  I
Sbjct: 1373 VMFREYTEKDLYLQINFFLFLFDVNKHNTTKTKISPNI 1410


>gi|134056299|emb|CAK37532.1| unnamed protein product [Aspergillus niger]
          Length = 1464

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1582 (31%), Positives = 772/1582 (48%), Gaps = 213/1582 (13%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            SA    L  L+ALR  G++   +  Y ++ +  IY+ V ++ Y  ++ R R +   F+VD
Sbjct: 2    SASRAKLAELRALRAAGKKRLST--YEVEEQGDIYEEVDDEGYKKII-RNRLDQDDFVVD 58

Query: 80   DDGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN------ 130
            D+G GY D+G+E   E  +  G   S DDE     ++ K++R E++ ++E   N      
Sbjct: 59   DNGEGYADDGREVWNERTADYGDSESEDDELPARGKAAKRKREEEKQRQEKINNGISKYF 118

Query: 131  -------VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFA 183
                     KP P  TA         L  + T+    +      VK        +L+   
Sbjct: 119  NSGAAPSAPKPKPVATAEDDAFMADLLGEVDTNVVPHRVPTRNIVKTEARRKVRILS--- 175

Query: 184  PDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVE 243
            P  ADR R+ R +  +            NS  V+   +  + N D  +  +   + D V 
Sbjct: 176  PPLADRTRKERPIKKD-----------ENSDPVSPVKDQPELNFDDDDGALPGMDDDDVP 224

Query: 244  ESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
             S  +   S  S  + ++     VK +  D+ + D+ E  ++                  
Sbjct: 225  MSDPMP-SSPISKAVERKSTTTPVKVEEFDDDDNDIMEIAQVTGQNDAKATSINMAGSRP 283

Query: 288  --KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE--------------VDD 331
              K+  E  P L++++  K +   +   ++ +S LN   S                 V++
Sbjct: 284  PPKLKKESTPALASSSPTKPMPEVDASWNDVRSKLNVLSSPASSEMRSFGKLRAQDVVEE 343

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP----- 384
            DGSL  + LD  E       G+L LFGKVK     ++ S  V V N+ R +Y +P     
Sbjct: 344  DGSLRMFWLDFTEV-----NGSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRH 398

Query: 385  -NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
             NG   +TDE + +E                       +  E+   +  L V  + + P 
Sbjct: 399  KNGR--ETDEEVDME----------------------DVYHEVDGMMSRLRVGMHKMKPC 434

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF    +P    Y LK+ YP+   PLP D+KGE F  + GT++S  E F++ + + 
Sbjct: 435  TRKYAFELPGVPKETEY-LKLFYPYDKSPLPMDVKGETFSHVFGTNTSLFEQFVLWKNIM 493

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I + +   A    SWCK+E     P  I     S+++ E PP+T+ +++ +T  
Sbjct: 494  GPCWLKIEE-ADFTAVNNASWCKFECQAAKPALISPVPDSENL-EAPPLTLMSLSFRTQL 551

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKE 621
            N  ++  EI+ AS      A++   +  ++   P  L    FTV+R   G  +PM F  E
Sbjct: 552  NVTENKQEILVAS------ARVYENVSLTDTTPPERLPCKTFTVMRPA-GSSYPMHFEAE 604

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
                 ++        E SE+ LL++ +    K+D DVL+GH +   DL +LL R +  + 
Sbjct: 605  -----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLSRLKEKKT 659

Query: 682  PSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREV 738
            P   W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  
Sbjct: 660  PG--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQ 711

Query: 739  SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSV 795
            S+SLT++    L K+  R+E+     LK + T  + LM  + + + D +    L+  L +
Sbjct: 712  SWSLTEMCDLYLGKENARQELDCEAALKTWATTKDGLMNFVNHCDADTYFIAALVLRLQM 771

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LPLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K    
Sbjct: 772  LPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLLK---- 823

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                    EE   E  + ++       +         GGLV EP+KGLYDK+IL++DFNS
Sbjct: 824  -------AEEKMQEGDDDESADKKKKDKY-------KGGLVFEPEKGLYDKFILVMDFNS 869

Query: 916  LYPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTW 968
            LYPSIIQEYNICFTTVER+          VP +P+S +  G+LP+L+  LV RRR VK  
Sbjct: 870  LYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREVKKL 929

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 930  MKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTK 989

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 990  ELAESK-QLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFRRL 1048

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V
Sbjct: 1049 LLHAKKKYAAINMTEVDGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQEVV 1108

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  +H+ L ++ E MR   V ++KYVI   L+K PE YP+ ++ P VQVALR    G S 
Sbjct: 1109 LNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPEEYPNKESMPPVQVALRELARGKSV 1168

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + Y++    G +  SS+  A+R+    ++ K D     DI++Y  +QI P + 
Sbjct: 1169 --RPNDVISYVVT--NGDAETSSLAPAKRSYTLQDVMKPDSGLKPDIEFYLLKQIFPPIE 1224

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEP 1322
            RLCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     
Sbjct: 1225 RLCAPIPGTDAVRLAECLGLDVRKYQINSSS--GSNQQNADIFPLESQIPDSVRFENATR 1282

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L+C  C   S F+  A  + +C                  T     CP +      S 
Sbjct: 1283 LTLTCRFCKEKSVFEGLAQSTHMC------------------TANGIICPNQACQKPFSV 1324

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   RG    +   C
Sbjct: 1325 LTIVAQLEAQIRAQTSKYYEGWLVCDDTACGNRTRQISVYGHRCLG--PRG----HAEGC 1378

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLD---TQRGIEKMEISAK---IPLEKELNKIRPVVAL 1491
             GR+  +Y+E  +Y QL YF  L D    ++  EK     K   +    E N+IR     
Sbjct: 1379 LGRMTYEYSEKQMYNQLLYFAGLWDVDKARKAAEKEPTGEKKDGVAALAEFNRIR--FGT 1436

Query: 1492 AASTVQRIRERCAYGWVKLNDI 1513
                V    ++C   WV+++ +
Sbjct: 1437 IKGVVDAYLKKCGRQWVEMDSL 1458


>gi|301109283|ref|XP_002903722.1| DNA polymerase alpha catalytic subunit, putative [Phytophthora
            infestans T30-4]
 gi|262096725|gb|EEY54777.1| DNA polymerase alpha catalytic subunit, putative [Phytophthora
            infestans T30-4]
          Length = 1523

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1625 (30%), Positives = 766/1625 (47%), Gaps = 268/1625 (16%)

Query: 24   EALERLKALRRGGR----RSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            +ALE +K +R G       S   +      E  IY  V + EY+ LV R+R +   F+ +
Sbjct: 19   QALEEIKRMRDGVEAEETTSSSRLAQYKPQEESIYKAVTDQEYEELV-RQRRQGLPFVEN 77

Query: 80   DDG-LGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
            DDG +GY D                     DG+    +   E  G  ++  +        
Sbjct: 78   DDGEMGYYD---------------------DGEEQFFESDPEDTGAAQDEDD-------- 108

Query: 139  TAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSS 198
                +  GK+R +  L+S+ + +  K ++ K       ++   F    +++ +   +   
Sbjct: 109  ----SAAGKKRSAGALSSSYVRRAKKMQRAKLGGGEGQKITNMFFSASSNKTKTNGAAPG 164

Query: 199  NIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNF-----VQIQNCDVVEESKELKWESD 253
             +K   +   +  +S L   ++N  +  +               +          K  S 
Sbjct: 165  GVKRTTAKRDIDLDSMLDDLTSNPTESRAAYARPMSYATGSSTFSSGTSSGFTARKPFSA 224

Query: 254  NSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSA-------------- 299
            N++    +DN  E  + +  +    +++ ++   + S      L+A              
Sbjct: 225  NTSSFMSKDNTAEPAKPIMSKREMMLRKAREQRLQTSAPTARALAAPVEQKLPEDGMTSS 284

Query: 300  -----TAGWKEVSGGNMV-LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGT 353
                  A W  V+G +   +    +  +  E E       S+  Y +DA E       G 
Sbjct: 285  VPSNEVAEWWHVAGDDDANVSMADASADDAEPETLPSAADSIQMYWMDAVEVRE--RPGK 342

Query: 354  LYLFGKVKAGS--------THHSCCVVVKNMQRCVYAIPNG-PLFQTDEIMKLEKDAEES 404
            +YL GK+K  S        T  SCCVVV N+QR +Y +P G PL    E+   E+     
Sbjct: 343  IYLIGKMKIPSPEGSNQPPTFRSCCVVVNNLQRYMYLVPKGTPLI---ELSNTEQ----- 394

Query: 405  RISPMAFRKKLQDVALGLKTEIANQLLNLNVSN------YIVSPVKRRYAFGQAEIPAGE 458
                       Q+  + +  EI N L+   ++N      +    V+R YAF +A IP G+
Sbjct: 395  -----------QEAWMKMHEEIHNILIPSCITNRRDQEVFKTKLVERNYAFEEANIPRGK 443

Query: 459  NYVLKINYPFKDPPLPADL---KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
            N  LK+ YP K P  P+D     G+ F  + G  +  LE FL+ R++ GP W+ I     
Sbjct: 444  NQFLKVKYPAKYPAPPSDFCSRGGKTFSRICGAFTRPLENFLLTRRLLGPGWVEIKGVRK 503

Query: 516  CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSA 575
            C   + VS+CK E     PK++   S        PP++V +++LK+V N     +E+V+ 
Sbjct: 504  CT--EGVSFCKMEFETFDPKNV---SPIAGGMSPPPLSVMSLSLKSVCNPNTGKHEVVAL 558

Query: 576  SVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI-FPMGFNKEATDRNSKAG---- 630
            S +       +     ++  K   LSHFT +R LD    FP  +  EA  R+ + G    
Sbjct: 559  SAITETGISSEGAGKGTKGAK-HTLSHFTAIRPLDENHGFPQAY-AEAVQRDDRFGMKME 616

Query: 631  -------SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
                   S  L  E +ER +L+  +  +   D DV+VGHN+  + L++L+ R    R+  
Sbjct: 617  NGALGINSERLRVEINERVMLSYFLTRVQLEDPDVIVGHNLHKYALELLISRIDNFRL-G 675

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS-CIAGRLLCDTFLCSRDLL-REVSYS 741
             +WSK+ RL+R  +  +       G G +   M   + GRL CDT++ S++LL  + +Y+
Sbjct: 676  GLWSKLTRLRRGRLNPMN-----VGEGWNEYRMDDMVNGRLFCDTYVSSKELLPSQNNYT 730

Query: 742  LTQLAKTQLNKDRKEVGPHDVLK-MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            L+ L +  L+K R +V   ++ + +    ++ ++ + +   DA   + LM  L +LPL++
Sbjct: 731  LSYLVERLLHKQRLDVEMTEIPQILLGGPDNFVKFLRHTLDDAMFVLHLMHKLEILPLSK 790

Query: 801  QLTNISGNLWGKTLQG-ARAQRVEYLLLHAF-RAK-KYIVPDKFTYVKETKMAKQRSNHG 857
            QL N+ G +W +TL+   RA+R+EYLLLH F R+K K+IVP+KF    E   + +R    
Sbjct: 791  QLANLCGYMWTRTLEANKRAERIEYLLLHEFSRSKNKFIVPEKFKSRTEADKSNKR---- 846

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                                         R  +YAGG+V  PKKGLYD +++LLDF SLY
Sbjct: 847  -----------------------------REASYAGGMVFAPKKGLYDNFVVLLDFMSLY 877

Query: 918  PSIIQEYNICFTTVER-------------------------------------------- 933
            PSII+EYNICFTTVER                                            
Sbjct: 878  PSIIREYNICFTTVERQLNEDVSGAPSSIKKKKKSKPMPQPENDEVVDDEDMDQNLDNAD 937

Query: 934  -SPDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKT----ASGLKIQQLDIQQQAL 987
             S D  +P LPSS +  GVLP ++K L++ R+ VK  +K      +  K   LDI+Q+A+
Sbjct: 938  ASADSEIPALPSSASEPGVLPAVIKRLLESRKQVKQQLKIEQKEGNVEKANMLDIRQKAI 997

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            KLTANSMYGCLGF  SRFYAKP+A LIT  GR+ L+   ++ +     +VIYGDTDSIM+
Sbjct: 998  KLTANSMYGCLGFRFSRFYAKPIAALITSTGRQTLQRAKEVAEQECGYDVIYGDTDSIMV 1057

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-DGMP 1106
             S  + + +AK I  ++  + NK +K LE+++D ++KR+LLL KKKYAA+ ++ + +  P
Sbjct: 1058 DSRTETLDEAKRIGREIQAQCNKHFKLLELEVDYIFKRILLLNKKKYAALVMKERPNSEP 1117

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
                E KGLDMVRRDW ++SK VG+  L  ILS  S +DVVESIH  L +V E MRSG+ 
Sbjct: 1118 TFDKEVKGLDMVRRDWCVISKAVGNEVLDFILSGNSRDDVVESIHEHLEQVAERMRSGKE 1177

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
             +E+YVITK+L K PE YPD   Q HVQVAL L+  G   G  AG  + Y++C E+   S
Sbjct: 1178 PIEQYVITKSLNKQPEQYPDRAKQYHVQVALALRALGKPVG--AGTHIAYVLCKEEEPGS 1235

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            G      +RA HPDE+K+ +GK  ID+++Y   QIHP V+RLCA IEGTS  +LA CLGL
Sbjct: 1236 G------RRAYHPDEVKRANGKLNIDVEWYLESQIHPPVNRLCAHIEGTSSPQLAHCLGL 1289

Query: 1287 DPSKFQSKPSETMSSDPSSSLLFAV-GDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
            D +KF    +    +D   ++   +  D +R++ C PL ++C  C      P V      
Sbjct: 1290 DTAKFSHSANHFEENDGGDAIPSVLQNDADRFKDCVPLEITCDRCKMASAFPGV-----F 1344

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEV----------EAGRISPGMIANQVKRQADGFV 1395
              SEK S      +    L CP C  +             G     +++N++        
Sbjct: 1345 GTSEKDS------SLASGLLCPVCKADFWGFDKEGIYGNVGDDLQAVLSNRLHIATRQAT 1398

Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
              YY+   +C D TCK  T   +LR       G +C +   C      +Y ++ LY QL 
Sbjct: 1399 KKYYEAWAVCSDVTCKTRTQKQSLR-----GNGNIC-SAAGCRATTTLEYPDSALYTQLK 1452

Query: 1456 YFCHLLDTQRGIEKME-----------ISAKIPLEKELNKIRPVVALAASTVQRIRERCA 1504
            YF  L D +R  +K+            ++   PL +   + R V+    S  +    R  
Sbjct: 1453 YFESLFDAERAQKKIREQKERVTSTTTVTEPPPLSE---RHRAVLQKLLSQAEEAVHRDD 1509

Query: 1505 YGWVK 1509
            Y WVK
Sbjct: 1510 YNWVK 1514


>gi|317157024|ref|XP_001826175.2| DNA polymerase alpha catalytic subunit [Aspergillus oryzae RIB40]
          Length = 1939

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1588 (32%), Positives = 782/1588 (49%), Gaps = 222/1588 (13%)

Query: 16   GAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
            GA ASARA+ L  L+ALR  G++   +  Y ++ ++ IY+ V ++ Y  ++ R R +   
Sbjct: 478  GAMASARAK-LAELRALRASGKKRIST--YEVEEQDDIYEEVDDEGYKKII-RNRLDEDD 533

Query: 76   FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESL--DGQRSIKKQRIEKRGKKENNQNVRK 133
            F+VDD+G GY D+G+E DW+V    S SDD  L  +G+ + +K+  +K+ K++ N  + K
Sbjct: 534  FVVDDNGEGYADDGRE-DWTVDYHDSESDDGDLPANGKAAKRKREEDKQRKEKINNGISK 592

Query: 134  PNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRR 193
                 + A+A                  K K     E E+ + ++L E   +        
Sbjct: 593  YFNKGSGASA-----------------PKPKPVATAEDEAFMADLLGEVDTNVVSNHVPT 635

Query: 194  RSV-SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWES 252
            ++V  S  +  V V S   + +       +  ENSD ++   Q  + D+  +   L    
Sbjct: 636  QNVIKSETRRKVRVLSPPLSHRPRPQKKQTKDENSDPMSPIGQKPDLDLDNDDGPLPVAD 695

Query: 253  DNSTELT------------KRDNFVEVKEKVKDEVNEDVKECKKLNA------------- 287
            D+   ++            +R   + VK +  DE + D+ E  ++               
Sbjct: 696  DDDVPMSDPMPSSPVSKAVERKTAITVKTEDPDEEDNDLMEIAEVTGQHEAKTTSVNMAG 755

Query: 288  -----KISTE-------KDPLLS----ATAGWKEVSGGNMVLDEGKS------GLNCQES 325
                 KI  E         P+ +    A A W +V     VL    S       L  Q+ 
Sbjct: 756  SRPPPKIKKEAYTTPANSSPVKAMPDVANASWNDVRNKLNVLSSPASETRTFGKLRAQDV 815

Query: 326  EFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAI 383
               V+DDGSL  + +D  E       G+L LFGKV+   T  + S  V V N+ R +Y +
Sbjct: 816  ---VEDDGSLRMFWIDFTEV-----NGSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFL 867

Query: 384  PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
            P       +   K  +D +E           ++DV      E+   +  L V  + + P 
Sbjct: 868  PR------EYRHKHGRDTDEE--------VDMEDVY----NEVDGMMSRLKVGMHKIKPC 909

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF    +P    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ + + 
Sbjct: 910  TRKYAFEMPGVPKETEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIM 968

Query: 504  GPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            GP WL    + FS   A    SWCK+E  V  P  I     S+++ E PP+T+ ++  +T
Sbjct: 969  GPCWLRFEGADFS---AVNNASWCKFECQVSKPALISPVPDSENL-EAPPLTLMSLAFRT 1024

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +PM F 
Sbjct: 1025 QLNVKENKQEILIAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPMHFE 1077

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             E      + G+ +L  E SE+ LL++ +    K+D DVL+GH +   DL +LL+R +  
Sbjct: 1078 AET---KRQRGTYIL--ERSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLNRLKEK 1132

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++
Sbjct: 1133 KTPG--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMK 1184

Query: 737  EVSYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S+SLT++    L     R+E+     LK + T  + LM  + + +TD +    L+  L
Sbjct: 1185 CQSWSLTEMCNLYLGPGNVRQELDGEAALKTWATTKDGLMNFVNHCDTDTYFVAALVLRL 1244

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++   +    K +
Sbjct: 1245 QMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSAKLQKAEVKLQ 1304

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                 +  + ++                             LV EP+KGLYD+++L++DF
Sbjct: 1305 DGDDDDATDKKKKDKYKGG----------------------LVFEPEKGLYDRFVLVMDF 1342

Query: 914  NSLYPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQEYNICFTTVER+          VP +P+S +  G+LP L+  LV RRR VK
Sbjct: 1343 NSLYPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREVK 1402

Query: 967  TWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRS
Sbjct: 1403 KLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRS 1462

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L ++   L VIYGDTDS+MI++ +D ++ A  +  +  + VN++Y+ LEID+D +++
Sbjct: 1463 TKELAESK-QLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFR 1521

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E
Sbjct: 1522 RLLLHAKKKYAAINMTEMDGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQE 1581

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  +H+ L  +   MR   V ++KYVI   L+K PE YP+ +  P VQVALR    G 
Sbjct: 1582 IVLNRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPEEYPNKETMPPVQVALRELARGK 1641

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P 
Sbjct: 1642 SV--RPNDVISYIVT--SGDSETSSLAPAKRSYTLQDVMKPDSGLNPDIEFYLLKQIFPP 1697

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   S   +   +    L   + D  R+     
Sbjct: 1698 IERLCAPIPGTDAVRLAECLGLDVRKYQINTSSGGNQQNTDIFPLESQIPDSVRFETAAR 1757

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L+C SC   S F+  A  S +C +                 L CP    + +   ++ 
Sbjct: 1758 LTLTCRSCKEKSVFEGLAASSHMCNA---------------NGLFCPNTACQKQFTVLT- 1801

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   RG    +   C
Sbjct: 1802 --IIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLG--PRG----HAEGC 1853

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN--KIRPVVALAAST 1495
             GR+  +Y+E  LY QL YF  L D  +        A++  EKE +  K   VVALA+  
Sbjct: 1854 LGRMSYEYSEKQLYNQLLYFAGLWDVDK--------ARVAAEKEASGEKKDSVVALASFN 1905

Query: 1496 VQRIR----------ERCAYGWVKLNDI 1513
              R            ++C   WV+++ +
Sbjct: 1906 RARFETVKGVVDAYLKKCGRQWVEMDSL 1933


>gi|451996792|gb|EMD89258.1| hypothetical protein COCHEDRAFT_1180672 [Cochliobolus heterostrophus
            C5]
          Length = 1470

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1565 (32%), Positives = 771/1565 (49%), Gaps = 185/1565 (11%)

Query: 23   AEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDG 82
            A  L  L+A R  G+    +  Y +  E  +YD V E+ Y  +V R R +   F+V D+G
Sbjct: 10   AALLAELRANRAAGKTRMST--YEVAEEEQLYDEVDEEGYKKIV-RGRLDEDDFVVGDEG 66

Query: 83   LGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAA 142
             GY D+G+EE     G    +  ES D      K +  KR ++E+ +  +K +  ++   
Sbjct: 67   EGYVDDGREEWDDDQGRYRYAGTESEDEDERPAKGKAAKRKREEDEEKRKKIDNGIS--- 123

Query: 143  AMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF------------APDEADRE 190
                 +  SA   + AM  KSK       +  +D++L E              P + +  
Sbjct: 124  -----KYFSA--KNAAMAPKSKPVATAADKDFMDDLLGEIDTNPTLTSTIRTRPIKTEAR 176

Query: 191  RRRRSVSSNI-KSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV-------- 241
            R+ R +S  + +S  +    +TN            E ++  ++ + I + DV        
Sbjct: 177  RKTRVLSPPVSESRPAATKRRTNDSDRHMPGTPPTEAAEADDDALPIFDDDVPMSDPPLQ 236

Query: 242  ---VEESKELKWESDNSTELTKRDNFVEVKEKVKD------EVN----EDVKECKKLNAK 288
               V ++ E + +     E  + D+ +E+ E           VN      + + K+ N  
Sbjct: 237  SSPVAKAVERRTQPGVKIE-EEEDDLMEISEPTGQLGAPVASVNMAGRRPIAKIKQENIP 295

Query: 289  ISTEKDPLLSATAG-----WKEVSGGNMVLDE------GKSGLNCQESEFEVDDDGSLPF 337
                  P   +TA      W +V+    V+        G   L  Q++   ++DDGSL  
Sbjct: 296  TPAGSSPTKPSTANVDASSWNDVTSNLNVMSSPAPQTAGAGKLQPQDA---LEDDGSLRM 352

Query: 338  YILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            + +D  E       G+L LFGKVK      + SC + + N+ R +Y +P     +  ++ 
Sbjct: 353  FWIDYTEL-----NGSLCLFGKVKDRKSGNYVSCFLKIDNILRKLYFLPR----EYRQVR 403

Query: 396  KLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIP 455
             +  D E            L DV+  + + ++   +NL    + + P  R+YAF  A+IP
Sbjct: 404  GVTTDEEIG----------LSDVSDEVDSIMSKHRVNL----HKIKPCTRKYAFELADIP 449

Query: 456  AGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
               +Y LK+ Y +   PL  DL GE F  + GT++S  E F++ + + GP WL I     
Sbjct: 450  KEADY-LKLLYGYDKMPLSTDLTGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDAPDF 508

Query: 516  CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSA 575
             P     SWCK E  V  P +I V S+S ++ + PP+T+ +++L+T FN + +  EI+ A
Sbjct: 509  GPVAN-ASWCKLEAQVVKPNNITVLSASDNL-DAPPMTLMSLSLRTTFNAKDNKQEILMA 566

Query: 576  SVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
            S +      +   TP+   + K       FT++R  +G  FP+GF  E      K   N 
Sbjct: 567  SAMIYDNFSLTDTTPVDQMQCK------SFTIMRP-NGPAFPIGFQGEV----EKIKGN- 614

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            +  + +E+ LL+ LM    + D DVLVGH +   D  VLL+R +  + P   W +IGRLK
Sbjct: 615  MYLKKTEQELLSLLMAMFQRHDPDVLVGHRLDDVDYSVLLNRLREKKTPG--WHRIGRLK 672

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKT 748
            RS+ PK   G+   G G+        +GRLLCD    + D+ + +     S+SL ++ + 
Sbjct: 673  RSDWPKTM-GK---GGGSFFAEKQLASGRLLCD---LANDMGKSLMPKCQSWSLEEMCQL 725

Query: 749  QLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
             LNK R+E+     LK + T  + L+  +++ + DA+    +   + +LPL++ LTN++G
Sbjct: 726  GLNKRREELDNEAALKTWATTKDGLLNYVKHCQADAYFIAAIAIKVQMLPLSKVLTNLAG 785

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N W +TL G RA+R EY+LLH F   KYI PDK     + K  ++ +         ++  
Sbjct: 786  NSWARTLSGTRAERNEYILLHEFYRNKYICPDKQWGKSKVKAEEEAAEGEEGADAKKKDK 845

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             +                         LV EP+KGLYDK+IL++DFNSLYPSIIQEYNIC
Sbjct: 846  FKGG-----------------------LVFEPEKGLYDKFILVMDFNSLYPSIIQEYNIC 882

Query: 928  FTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLD 981
            FTTVERS     D  VP +PS +  G+LP L+  LV RRR VK  MK   A+  ++   D
Sbjct: 883  FTTVERSDISEDDDKVPEVPSDQDQGILPRLIATLVSRRREVKKLMKAKDATPDQLATWD 942

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR T D+ +    L VIYGD
Sbjct: 943  IKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRKTKDMAEEKA-LRVIYGD 1001

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            TDS+MI++ +D+I  A  +  +  +EVN  YK LEID+D +++R+LL  KKKYAA+ +  
Sbjct: 1002 TDSVMINTNVDNIQDAIKLGNEFKKEVNDSYKLLEIDIDNVFRRILLHAKKKYAAINMVP 1061

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             DG   E +E KGLDM RR++  LSKE     L+ +LS    E VVE IHN L ++ + M
Sbjct: 1062 VDGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGEDPEVVVEKIHNHLRELSKQM 1121

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            R   +   KY I   L K P+ YP+  + P VQVALRL   G      A D + +II   
Sbjct: 1122 REYAIPPRKYTIYTQLGKNPKEYPNGNSMPSVQVALRLMAKG--KHVKAKDVMSFIIT-- 1177

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
             G SSGS+   A+ A   DE+ K D     D+DYY  +QI P V RLCA I GT+   LA
Sbjct: 1178 -GDSSGSAENAAKNAYPVDEVLKPDSGLKPDVDYYLHKQILPPVERLCAPISGTNITLLA 1236

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAV 1339
             CLGLD SK++       +   +    L   + D  R++ C PL L C +C++ F    +
Sbjct: 1237 ACLGLDTSKYRVSTVSGGAQQETEIHPLESQIPDSVRFQSCSPLWLRCRTCTTVFPFQGL 1296

Query: 1340 CSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
                       P+ P +      +    +CP E     +    +  Q++      V+ YY
Sbjct: 1297 S----------PTSPTSASLQTISHSGIQCPAEGCGMILQNISVVAQLESAIRQVVASYY 1346

Query: 1400 KGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
             G ++CDD  C   T S+++   R +G   +G        C G++  +  E D++ QL Y
Sbjct: 1347 AGYVLCDDPQCSNRTRSISVYGHRCLG--PKGLA----RDCLGKMTYEIKERDVWNQLLY 1400

Query: 1457 FCHLLDTQR------GI--EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWV 1508
            +  L D  R      GI  E ME   KI +  E+N+ R       S VQ+  E+    WV
Sbjct: 1401 YQSLFDVDRAGKMDGGIKSEDMERREKIKVLAEVNRER--FDTLKSVVQKWLEKNGRQWV 1458

Query: 1509 KLNDI 1513
            +++ +
Sbjct: 1459 QMDSL 1463


>gi|320163763|gb|EFW40662.1| DNA polymerase alpha subunit I [Capsaspora owczarzaki ATCC 30864]
          Length = 1656

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1209 (38%), Positives = 632/1209 (52%), Gaps = 167/1209 (13%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E ++  + G +YL GKV  +    H SCCVVV N +R ++ +P       + I
Sbjct: 486  FYWLDAYEDMT-ISPGLIYLIGKVWSETDKRHVSCCVVVHNNERNIFILPREHALDANGI 544

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
                  A+E  I         +DV    + E+ N      +  +   PV+R YAFG   +
Sbjct: 545  ----STAKEVTI---------EDV----EDELDNVRAKYRIEEWRSKPVQRLYAFGLPGV 587

Query: 455  PAGENYVLKINYPFKDPPLPA-DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            PA   Y+ K+ Y    P L A D  G+ +  + GT +S LE FLVKR + GP WL +   
Sbjct: 588  PAYATYI-KVKYSAALPALAAADQSGKTYSHIFGTTTSCLERFLVKRALMGPCWLKVPCR 646

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
             +  AP+  +WC  E   D+PK I   ++   +   PP+ V ++ +KT+ N  +  +E+ 
Sbjct: 647  PNNGAPE--TWCALEAICDNPKSISKIAARDLLP--PPLVVCSLAMKTILNASKHKHEVA 702

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
              S+V       +  M  + ++      H T+V K      P GF          AG  +
Sbjct: 703  VVSLVLHTNVSAEGEMPTTGYE------HLTLVAKPANRTLPFGFANAC----KTAGFTL 752

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
              C+S E+ LLNRLM  + + D D+L+GHN  GFDLDVLLHR Q   V +  WSK+GRL+
Sbjct: 753  ESCDS-EQLLLNRLMNTIGQADPDMLIGHNFVGFDLDVLLHRMQDLSVRT--WSKLGRLR 809

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            RS+MP+L       GS AS G    ++GRL  D +L ++DL++  +Y LT+LA  QL +D
Sbjct: 810  RSQMPRLSNHH---GSDASFGERIVLSGRLTADMYLQAKDLVKARTYMLTELALLQLGED 866

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            R E+    + + F     L++L    E DA LS+ L   + V+PLTRQLTNI+GNLW +T
Sbjct: 867  RPELDIESISQRFNDSAELIQLCRLCEKDAVLSVRLAAKMMVIPLTRQLTNIAGNLWSRT 926

Query: 814  LQGARAQRVEYLLLHAFR-------AKKYIVPDKF--TYVKETKMAKQRSNHGVEDRNVE 864
            L G RA+R E+ LLH F         +K+I PDK   + V++   A   +  G  +R   
Sbjct: 927  LLGGRAERNEFYLLHEFSRPTVWEANRKFIPPDKIYASQVRKAAAAAAAAAAGKGNRGKA 986

Query: 865  ELTNEDANFDND--------------TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
                 D   D D               +     K ++  AYAGGLVLEPKKG YD+YILL
Sbjct: 987  AAAAADEGMDEDDQGPSDPASTAAGGGAAAGAFKKRKKAAYAGGLVLEPKKGFYDRYILL 1046

Query: 911  LDFNSLYPSIIQEYNICFTTVER-----SPDGL----------VP--HLPS-SKTTGVLP 952
            LDFNSLYPSII EYNICFTTV++      P GL           P   LP+ ++  G+LP
Sbjct: 1047 LDFNSLYPSIIMEYNICFTTVDKPQPVSDPTGLEDGNGQPLMITPPAELPAKTRKDGLLP 1106

Query: 953  ELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
             +L  LVQ+R + K  M      K QQ DI+Q+ALKLTANSMYGCLGF+NSRFYAK LAE
Sbjct: 1107 RVLSRLVQQRALAKKEMANHPEQK-QQWDIRQRALKLTANSMYGCLGFTNSRFYAKHLAE 1165

Query: 1013 LITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            LIT +GR+IL+STVDLVQ  LNLEVIYGDTDSIMI++    +     +  +V ++VN +Y
Sbjct: 1166 LITGRGRDILQSTVDLVQQQLNLEVIYGDTDSIMINTQSIHLPDVLEVGQRVKKQVNDRY 1225

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM-------PYEVIERKGLDMVRRDWSLL 1125
            K L I++DG++K MLLLKKKKYAA+ V  KDG        P    E KGLD+VRRDW  L
Sbjct: 1226 KQLVIEMDGIFKSMLLLKKKKYAALSVHLKDGAVEMVNGAPRVSRETKGLDIVRRDWCDL 1285

Query: 1126 SKEVGDFCLSQILSERSCEDV-------------VESIHNSLMKVQEDMRSGQVALEKYV 1172
            + + G+F L+QILS+ +   +             VE I   L+++  D+R+G+  L K+V
Sbjct: 1286 AHDAGNFVLNQILSDNNAASIDDAAEGVLSKDALVERIRTYLLQLAADVRTGKTLLNKFV 1345

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            I K LTK PE Y D K+QPHVQVALRLK+ G      AGDTVPY+IC     S    +G 
Sbjct: 1346 INKGLTKNPEEYADKKSQPHVQVALRLKEQG--KAVRAGDTVPYVIC-----SGSQELGP 1398

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC-LGLDPS-- 1289
            A RA HPDE+ +   + +       S    P +    A+     P     C L +D    
Sbjct: 1399 ADRAYHPDEILRAFSRAIAAQAQLPSDAPLPQLDIQTAT--SAVPASAIACELNVDVEWY 1456

Query: 1290 -KFQSKPSETMSSDP---SSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
             K+Q  P  +   DP   +S+ L A      Y G +    +  + S+   CP        
Sbjct: 1457 LKYQVHPVISRLCDPIEGTSAALIA-----EYLGLDTTPYTHRTSSNGMACPR------- 1504

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMC 1405
                                 P C  E  A  +S   + N++     GF+  YY+G M C
Sbjct: 1505 ---------------------PNCTGEFRA--VS---VMNRLTIMMRGFIDEYYQGWMKC 1538

Query: 1406 DDETCKYT-TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
            DD  C+   T  L++        G  C N P C G +  + T+  LY QL YF  L D Q
Sbjct: 1539 DDAACQQQRTRQLSVN-------GRKCLN-PGCKGTMRLENTDTKLYTQLLYFQRLFDLQ 1590

Query: 1465 RGIEKMEIS 1473
            R  +K+E S
Sbjct: 1591 RAFQKIEDS 1599


>gi|425771140|gb|EKV09593.1| DNA polymerase [Penicillium digitatum Pd1]
 gi|425776664|gb|EKV14872.1| DNA polymerase [Penicillium digitatum PHI26]
          Length = 1460

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1566 (32%), Positives = 784/1566 (50%), Gaps = 193/1566 (12%)

Query: 24   EALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGL 83
            E L  L+ALR  G++   +  Y ++ +  IYD V +D Y  ++ R R +   F+VDD+G 
Sbjct: 6    ERLAELRALRASGKKRIST--YEVEDQGDIYDEVDDDGYKKVI-RNRLDQDDFVVDDNGA 62

Query: 84   GYGDEGQEEDWSVAGLPSSSD--DESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAA 141
            GY D+G+E  W+   +   SD  DE     ++ K++R E++ +KE   N      +   A
Sbjct: 63   GYADDGREV-WNEQTVEYDSDESDELPTRGKAAKRKREEEQQRKEKMNNGISKYFNKGQA 121

Query: 142  AAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIK 201
            AA   K +L+A     A F      KV  +  +           EA R+ R  S   + +
Sbjct: 122  AASAPKPKLAATAEDDA-FMADLLGKVDTNVVLNHAPTRNIVKSEARRKVRVLSPPLSER 180

Query: 202  SFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKR 261
                +++   N    +   +    + DL +  + + + D V  S  L   S   ++  +R
Sbjct: 181  HREKLHTRDENDLPRSPKKDQALHSDDLDDGPLSMPDDDDVPMSDVLP--SSPISKAVER 238

Query: 262  DNFVEVK--EKVKDEVN-EDVKEC--------KKLN-------AKISTEKDPLLSAT--- 300
             N V VK  E   D+V+  DV E         K +N        KI  + DP  +++   
Sbjct: 239  RNTVLVKAEEPEDDDVDLMDVAEVTGDSTLKSKTINMTGSRPPPKIKHDTDPTPASSSPV 298

Query: 301  --------AGWKEVSGGNMVLD----EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSG 348
                    A W +V     VL     E +S    +  +  V+DDGSL  + LD  E    
Sbjct: 299  KSMPEVMDASWNDVRSKLNVLSSPAPETRSFGKLRAQDV-VEDDGSLRIFWLDYTEV--- 354

Query: 349  ANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRI 406
               G+L LFGKVK     +  S  V V N+ R +Y +P              ++      
Sbjct: 355  --NGSLCLFGKVKNKQNGSFTSAFVKVDNILRKLYFLP--------------REYRHRHG 398

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY 466
             P      +QDV     +E+   +  L V  + + P +R+YAF    +P    Y LK+ Y
Sbjct: 399  RPTEEEVDMQDVY----SEVDEMMSKLKVGMHKMKPCERKYAFEIPGVPKEAEY-LKLLY 453

Query: 467  PFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
            P+    LP + KGE F ++ GT++S  E F++ + + GP WL + + +   A    SWCK
Sbjct: 454  PYDKAALPMETKGETFSNVFGTNTSLFEQFVLWKNIMGPCWLRVDQ-ADFAAVTNASWCK 512

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
            +E     P  I +   S+++ + PP+T+ +++ +T  N +++  EI+ AS      A++ 
Sbjct: 513  FECRAAKPALISLVPDSENL-DAPPLTLMSLSFRTQLNAKENKQEILIAS------ARVY 565

Query: 587  TPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644
              +  ++   P  L    FTV+R   G  +PM F  EA    S+ G+ +L  E SE+ LL
Sbjct: 566  EDVSLTDNTPPEKLPCKTFTVMRPA-GASYPMHFEAEA---RSQRGTVIL--EKSEQFLL 619

Query: 645  NRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRKG 703
            ++ +    K+D DV++GH +   DL +LL R +  + P   W +IGRL+R + PK   KG
Sbjct: 620  SKFLAMFEKMDPDVVMGHQLQDVDLGILLSRMREKKTPG--WHRIGRLRRGDWPKNFNKG 677

Query: 704  RTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKE 756
               F           IAGRL+CD    + D+ + +     S+SLT++ +  L +   R+E
Sbjct: 678  GNFFAE------RQLIAGRLMCDV---ANDMGKSLMTKCQSWSLTEMCQLYLGQGNVRQE 728

Query: 757  VGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            +     LK + T  E LM  + + +TD +    L+  L +LPLT+ LTN +GN W +TL 
Sbjct: 729  LDAEAALKTWATTKEGLMNFVNHCDTDTYFIAALVLRLQMLPLTKVLTNTAGNSWARTLS 788

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G RA+R EY+LLH F   KYI PDK++    +++ K       ED+              
Sbjct: 789  GTRAERNEYILLHEFHRNKYICPDKYS----SRLQK------TEDKM------------Q 826

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
            D   ++    K+   Y GGLV EP+ GLYD+++L++DFNSLYPSIIQEYNICFTTV+R+ 
Sbjct: 827  DGDDDEAVDKKKKDKYKGGLVFEPETGLYDRFVLVMDFNSLYPSIIQEYNICFTTVDRTA 886

Query: 936  ------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQA 986
                  +  VP +PSS +  GVLP L+  LV RRR VK  MK   A+  ++   D +Q A
Sbjct: 887  MAENENEENVPDVPSSDQEQGVLPRLIATLVSRRREVKKLMKDKRATPEQLAIWDTKQLA 946

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+T +L ++   L VIYGDTDS+M
Sbjct: 947  LKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNTKELAESQ-QLRVIYGDTDSVM 1005

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
            I++ +D+++ A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAAV +   DG  
Sbjct: 1006 INTNMDNMSDAIKVGEEFKKSVNERYRLLEIDIDNIFRRLLLHAKKKYAAVNLTEVDGKY 1065

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
             E +E KGLDM RR++  LSKEV    L++ILS    E V+  IH  L ++ E M+   +
Sbjct: 1066 VEKLEVKGLDMKRREYCALSKEVSSKLLNEILSGEDQEVVLNKIHEYLRELAERMKEYTI 1125

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
             ++KYVI   L+K P+ YP+ ++ P  QVALR    G +      D + YI+    G S 
Sbjct: 1126 PVQKYVIYTKLSKRPQEYPNKESLPPAQVALREIARGKTV--RPNDVISYIVT--NGDSE 1181

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
             SS+  A+R+  P ++ K D     D+++Y  +QI P V RLCA I GT   RLA+CLGL
Sbjct: 1182 TSSLPPAKRSYSPQDVLKSDSGLKPDVEFYILKQIFPPVERLCAPIPGTDAVRLAECLGL 1241

Query: 1287 DPSKFQ--SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSS 1342
            D  K+Q  +  S    +   + L   + D  R+     L L C  C   S ++     S 
Sbjct: 1242 DTRKYQINTSSSSNQQNAEVTPLESQIPDSVRFANSTRLSLRCRYCKEQSVYEGMVASSH 1301

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKG 1401
            +C                  T     CP +    +I P M I  Q++ Q     + YY+G
Sbjct: 1302 MC------------------TAHGIVCPNQ-SCQKIFPVMTIVAQLEHQIREQTTRYYEG 1342

Query: 1402 LMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
             ++CDD +C   T  +++   R +G   R         C GR+  +Y+E ++Y QL YF 
Sbjct: 1343 WLVCDDSSCGNRTRQISVYGHRCLGPRGRAE------GCLGRMSYEYSEKEIYNQLLYFS 1396

Query: 1459 HLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA-----------STVQRIRERCAYGW 1507
             L D ++        AK+  EKE  + +  VA  A             V    ++C   W
Sbjct: 1397 GLWDVEK--------AKVAAEKETGEKKDSVAALAEFNRTRFGTIKGVVDSYLKKCGRQW 1448

Query: 1508 VKLNDI 1513
            V+++ +
Sbjct: 1449 VEMDSL 1454


>gi|391865026|gb|EIT74318.1| DNA polymerase alpha, catalytic subunit [Aspergillus oryzae 3.042]
          Length = 1460

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1585 (32%), Positives = 780/1585 (49%), Gaps = 222/1585 (14%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++   +  Y ++ ++ IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKKRIST--YEVEEQDDIYEEVDDEGYKKII-RNRLDEDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWSVAGLPSSSDDESL--DGQRSIKKQRIEKRGKKENNQNVRKPNP 136
            DD+G GY D+G+E DW+V    S SDD  L  +G+ + +K+  +K+ K++ N  + K   
Sbjct: 58   DDNGEGYADDGRE-DWTVDYHDSESDDGDLPANGKAAKRKREEDKQRKEKINNGISKYFN 116

Query: 137  SLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSV 196
              + A+A                  K K     E E+ + ++L E   +        ++V
Sbjct: 117  KGSGASA-----------------PKPKPVATAEDEAFMADLLGEVDTNVVSNHVPTQNV 159

Query: 197  -SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
              S  +  V V S   + +       +  ENSD ++   Q  + D+  +   L    D+ 
Sbjct: 160  IKSETRRKVRVLSPPLSHRPRPQKKQTKDENSDPMSPIGQKPDLDLDNDDGPLPVADDDD 219

Query: 256  TELT------------KRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
              ++            +R   + VK +  DE + D+ E  ++                  
Sbjct: 220  VPMSDPMPSSPVSKAVERKTAIAVKTEDPDEEDNDLMEIAEVTGQHEAKTTSVNMAGSRP 279

Query: 288  --KISTE-------KDPLLS----ATAGWKEVSGGNMVLDEGKS------GLNCQESEFE 328
              KI  E         P+ +    A A W +V     VL    S       L  Q+    
Sbjct: 280  PPKIKKEAYTTPANSSPVKAMPDVANASWNDVRNKLNVLSSPASETRTFGKLRAQDV--- 336

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V+DDGSL  + +D  E       G+L LFGKV+   T  + S  V V N+ R +Y +P  
Sbjct: 337  VEDDGSLRMFWIDFTEV-----NGSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPR- 390

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                 +   K  +D +E           ++DV      E+   +  L V  + + P  R+
Sbjct: 391  -----EYRHKHGRDTDEE--------VDMEDVY----NEVDGMMSRLKVGMHKIKPCTRK 433

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ + + GP 
Sbjct: 434  YAFEMPGVPKETEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPC 492

Query: 507  WLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            WL    + FS   A    SWCK+E  V  P  I     S+++ E PP+T+ ++  +T  N
Sbjct: 493  WLRFEGADFS---AVNNASWCKFECQVSKPALISPVPDSENL-EAPPLTLMSLAFRTQLN 548

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +PM F  E 
Sbjct: 549  VKENKQEILIAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPMHFEAET 601

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 + G+ +L  E SE+ LL++ +    K+D DVL+GH +   DL +LL+R +  + P
Sbjct: 602  ---KRQRGTYIL--ERSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLNRLKEKKTP 656

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  S
Sbjct: 657  G--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 708

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L     R+E+     LK + T  + LM  + + +TD +    L+  L +L
Sbjct: 709  WSLTEMCNLYLGPGNVRQELDGEAALKTWATTKDGLMNFVNHCDTDTYFVAALVLRLQML 768

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++   +    K +   
Sbjct: 769  PLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSAKLQKAEVKLQDGD 828

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              +  + ++                             LV EP+KGLYD+++L++DFNSL
Sbjct: 829  DDDATDKKKKDKYKGG----------------------LVFEPEKGLYDRFVLVMDFNSL 866

Query: 917  YPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWM 969
            YPSIIQEYNICFTTVER+          VP +P+S +  G+LP L+  LV RRR VK  M
Sbjct: 867  YPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREVKKLM 926

Query: 970  KT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 927  KDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKE 986

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L VIYGDTDS+MI++ +D ++ A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 987  LAESK-QLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFRRLL 1045

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V+
Sbjct: 1046 LHAKKKYAAINMTEMDGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQEIVL 1105

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              +H+ L  +   MR   V ++KYVI   L+K PE YP+ +  P VQVALR    G S  
Sbjct: 1106 NRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPEEYPNKETMPPVQVALRELARGKSV- 1164

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + R
Sbjct: 1165 -RPNDVISYIVT--SGDSETSSLAPAKRSYTLQDVMKPDSGLNPDIEFYLLKQIFPPIER 1221

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLIL 1325
            LCA I GT   RLA+CLGLD  K+Q   S   +   +    L   + D  R+     L L
Sbjct: 1222 LCAPIPGTDAVRLAECLGLDVRKYQINTSSGGNQQNTDIFPLESQIPDSVRFETAARLTL 1281

Query: 1326 SCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
            +C SC   S F+  A  S +C +                 L CP    + +   ++   I
Sbjct: 1282 TCRSCKEKSVFEGLAASSHMCNA---------------NGLFCPNTACQKQFTVLT---I 1323

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGR 1440
              Q++ Q     S YY+G ++CDD  C   T  +++   R +G   RG    +   C GR
Sbjct: 1324 IAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLG--PRG----HAEGCLGR 1377

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN--KIRPVVALAASTVQR 1498
            +  +Y+E  LY QL YF  L D  +        A++  EKE +  K   VVALA+    R
Sbjct: 1378 MSYEYSEKQLYNQLLYFAGLWDVDK--------ARVAAEKEASGEKKDSVVALASFNRAR 1429

Query: 1499 IR----------ERCAYGWVKLNDI 1513
                        ++C   WV+++ +
Sbjct: 1430 FETVKGVVDAYLKKCGRQWVEMDSL 1454


>gi|238493215|ref|XP_002377844.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus flavus
            NRRL3357]
 gi|220696338|gb|EED52680.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus flavus
            NRRL3357]
          Length = 1460

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1585 (32%), Positives = 780/1585 (49%), Gaps = 222/1585 (14%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++   +  Y ++ ++ IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKKRIST--YEVEEQDDIYEEVDDEGYKKII-RNRLDEDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWSVAGLPSSSDDESL--DGQRSIKKQRIEKRGKKENNQNVRKPNP 136
            DD+G GY D+G+E DW+V    S SDD  L  +G+ + +K+  +K+ K++ N  + K   
Sbjct: 58   DDNGEGYADDGRE-DWTVDYHDSESDDGDLPANGKAAKRKREEDKQRKEKINNGISKYFN 116

Query: 137  SLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSV 196
              + A+A                  K K     E E+ + ++L E   +        ++V
Sbjct: 117  KGSGASA-----------------PKPKPVATAEDEAFMADLLGEVDTNVVSNHVPTQNV 159

Query: 197  -SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
              S  +  V V S   + +       +  ENSD ++   Q  + D+  +   L    D+ 
Sbjct: 160  IKSETRRKVRVLSPPLSHRPRPQKKQTKDENSDPMSPIGQKPDLDLDNDDGPLPVADDDD 219

Query: 256  TELT------------KRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
              ++            +R   + VK +  DE + D+ E  ++                  
Sbjct: 220  VPMSDPMPSSPVSKAVERKTAITVKTEDPDEEDNDLMEIAEVTGQHEAKTTSVNMAGSRP 279

Query: 288  --KISTE-------KDPLLS----ATAGWKEVSGGNMVLDEGKS------GLNCQESEFE 328
              KI  E         P+ +    A A W +V     VL    S       L  Q+    
Sbjct: 280  PPKIKKEAYTTPANSSPVKAMPDVANASWNDVRNKLNVLSSPASETRTFGKLRAQDV--- 336

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V+DDGSL  + +D  E       G+L LFGKV+   T  + S  V V N+ R +Y +P  
Sbjct: 337  VEDDGSLRMFWIDFTEV-----NGSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPR- 390

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                 +   K  +D +E           ++DV      E+   +  L V  + + P  R+
Sbjct: 391  -----EYRHKHGRDTDEE--------VDMEDVY----NEVDGMMSRLKVGMHKIKPCTRK 433

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ + + GP 
Sbjct: 434  YAFEMPGVPKETEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPC 492

Query: 507  WLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            WL    + FS   A    SWCK+E  V  P  I     S+++ E PP+T+ ++  +T  N
Sbjct: 493  WLRFEGADFS---AVNNASWCKFECQVSKPALISPVPDSENL-EAPPLTLMSLAFRTQLN 548

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +PM F  E 
Sbjct: 549  VKENKQEILIAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPMHFEAET 601

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 + G+ +L  E SE+ LL++ +    K+D DVL+GH +   DL +LL+R +  + P
Sbjct: 602  ---KRQRGTYIL--ERSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLNRLKEKKTP 656

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  S
Sbjct: 657  G--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 708

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L     R+E+     LK + T  + LM  + + +TD +    L+  L +L
Sbjct: 709  WSLTEMCNLYLGPGNVRQELDGEAALKTWATTKDGLMNFVNHCDTDTYFVAALVLRLQML 768

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++   +    K +   
Sbjct: 769  PLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSAKLQKAEVKLQDGD 828

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              +  + ++                             LV EP+KGLYD+++L++DFNSL
Sbjct: 829  DDDATDKKKKDKYKGG----------------------LVFEPEKGLYDRFVLVMDFNSL 866

Query: 917  YPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWM 969
            YPSIIQEYNICFTTVER+          VP +P+S +  G+LP L+  LV RRR VK  M
Sbjct: 867  YPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREVKKLM 926

Query: 970  KT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 927  KDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKE 986

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L VIYGDTDS+MI++ +D ++ A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 987  LAESK-QLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFRRLL 1045

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V+
Sbjct: 1046 LHAKKKYAAINMTEMDGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQEIVL 1105

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              +H+ L  +   MR   V ++KYVI   L+K PE YP+ +  P VQVALR    G S  
Sbjct: 1106 NRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPEEYPNKETMPPVQVALRELARGKSV- 1164

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + R
Sbjct: 1165 -RPNDVISYIVT--SGDSETSSLAPAKRSYTLQDVMKPDSGLNPDIEFYLLKQIFPPIER 1221

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLIL 1325
            LCA I GT   RLA+CLGLD  K+Q   S   +   +    L   + D  R+     L L
Sbjct: 1222 LCAPIPGTDAVRLAECLGLDVRKYQINTSSGGNQQNTDIFPLESQIPDSVRFETAARLTL 1281

Query: 1326 SCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
            +C SC   S F+  A  S +C +                 L CP    + +   ++   I
Sbjct: 1282 TCRSCKEKSVFEGLAASSHMCNA---------------NGLFCPNTACQKQFTVLT---I 1323

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGR 1440
              Q++ Q     S YY+G ++CDD  C   T  +++   R +G   RG    +   C GR
Sbjct: 1324 IAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLG--PRG----HAEGCLGR 1377

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN--KIRPVVALAASTVQR 1498
            +  +Y+E  LY QL YF  L D  +        A++  EKE +  K   VVALA+    R
Sbjct: 1378 MSYEYSEKQLYNQLLYFAGLWDVDK--------ARVAAEKEASGEKKDSVVALASFNRAR 1429

Query: 1499 IR----------ERCAYGWVKLNDI 1513
                        ++C   WV+++ +
Sbjct: 1430 FETVKGVVDAYLKKCGRQWVEMDSL 1454


>gi|189205368|ref|XP_001939019.1| DNA polymerase alpha catalytic subunit A [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187986118|gb|EDU51606.1| DNA polymerase alpha catalytic subunit A [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1472

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1232 (36%), Positives = 657/1232 (53%), Gaps = 133/1232 (10%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKN 375
            +G+   E +  V++DGSL F+ +D  E       G+L LFGKVK   T  + SC V V N
Sbjct: 331  TGIGKMEPQDAVEEDGSLRFFWIDYTEI-----NGSLCLFGKVKNNKTGNYSSCFVKVDN 385

Query: 376  MQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV 435
            + R +Y +P        E   +   A +  +        L DV+  + + ++   +NL  
Sbjct: 386  ILRKLYFLPR-------EYRHVRGVATDEEVG-------LSDVSDEVDSIMSKHRVNL-- 429

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL 495
              + + P  R+YAF   +IP   +Y LK+ Y +   PL +DLKGE F  + GT++S  E 
Sbjct: 430  --HKIKPCTRKYAFELPDIPKEADY-LKLLYGYDKMPLSSDLKGETFSHVFGTNTSLFEQ 486

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++ + + GP WL I    F S       SWCK E+ V  P +I V S+S ++ + PP+T
Sbjct: 487  FVLWKNIMGPCWLKIDNPDFGSL---SNASWCKLEVLVSKPNNIAVMSASDNL-DAPPMT 542

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDG 611
            + +++L+T FN + +  EI+ AS +      +   TP+   + K       FT++R  +G
Sbjct: 543  LMSLSLRTTFNAKDNKQEILMASAMIYDNFSLTDTTPVDQMQCKS------FTIMRP-NG 595

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
              FP+GF KE      K   N +  + +E+ LL+ LM    + D DVL+GH +   D  V
Sbjct: 596  SSFPIGFEKEV----EKIKGN-MYLKKTEQELLSLLMAMFQRHDPDVLIGHRLDDVDYSV 650

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            LL R +  + P   W +IGRLKRS+ PK   G+   G G+        +GRLLCD    +
Sbjct: 651  LLSRLREKKTPG--WHRIGRLKRSDWPK-SMGK---GGGSFFAEKQLASGRLLCD---LA 701

Query: 732  RDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWL 785
             DL + +     S+SL ++ +  LNK R+E+     LK + T  E L+  +++ + DA+ 
Sbjct: 702  NDLGKSLMTKCQSWSLEEMCQLVLNKRREELDNDAALKTWATTKEGLLNYVKHCQADAYF 761

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
               +   + +LPLT+ LTN++GN WG+TL G RA+R EY+LLH F   KYI PDK     
Sbjct: 762  IAAISIKVQMLPLTKVLTNLAGNSWGRTLSGTRAERNEYILLHEFHKNKYICPDKQWGKS 821

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
            + K+ ++ +         ++   +                         LV EP+KGLYD
Sbjct: 822  KAKVDEEAAEGEEGADAKKKDKFKGG-----------------------LVFEPEKGLYD 858

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQR 961
            K+IL++DFNSLYPSIIQE+NICFTTVERS     D  VP +P+ +  G+LP L+  LV R
Sbjct: 859  KFILVMDFNSLYPSIIQEFNICFTTVERSDLSEDDDKVPEVPTDQQQGILPRLIATLVSR 918

Query: 962  RRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
            RR VK  MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GR
Sbjct: 919  RREVKKLMKAKDATSDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGR 978

Query: 1020 EILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
            EILR T D+ +    L VIYGDTDS+MI++ +D+I  A  +  +  +EVN  YK LEID+
Sbjct: 979  EILRKTKDMAEVKA-LRVIYGDTDSVMINTNVDNIQDALKLGNEFKREVNDSYKLLEIDI 1037

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            D +++R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKE     L+ +LS
Sbjct: 1038 DNVFRRILLHAKKKYAAINMVPVDGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLS 1097

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
                E VVE IHN L ++ + MR   +   KY I   L K P+ YP+  + P VQVALRL
Sbjct: 1098 GEDPEVVVEKIHNHLRELSKQMREYAIPARKYTIYTQLGKNPKEYPNGGSMPAVQVALRL 1157

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            +  G      A D + +II    G SSGS+   A+ A   DE+ K D     DIDYY  +
Sbjct: 1158 QSKG--KLVKAKDVMSFIIT---GESSGSAENAAKNAFPVDEVLKPDSGLKPDIDYYLHK 1212

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ-SKPSETMSSDPS-SSLLFAVGDEERY 1317
            QI P V RLCA I GT+   LA CLGLD SK++ S  S +   D     L   + D  R+
Sbjct: 1213 QILPPVERLCAPISGTNITLLAACLGLDSSKYRVSTVSGSAQQDTEIHPLESQIPDSVRF 1272

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
            + C PL L C +C++ F    + S+   ++S +       +N    ++CP  P     G 
Sbjct: 1273 QSCSPLWLRCRTCTTVFPFQGLASTSPTTLSLQ----TISHN---GIQCP-AP---TCGT 1321

Query: 1378 ISPGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPN 1433
            I P + +  Q++      ++ YY G ++CDD  C   T S+++   R +G   +G     
Sbjct: 1322 IIPNITVVAQLESAIRQILATYYAGHVVCDDPQCSNRTRSISVYGHRCLG--PKGLA--- 1376

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR----------GI--EKMEISAKIPLEKE 1481
               C G++     E D++ QL YF  L D  R          G+  E+ME   KI +  E
Sbjct: 1377 -RDCLGKMSYVVKERDVWNQLLYFASLFDVDRVGKDVGGGSAGVKAEEMERREKIKVLAE 1435

Query: 1482 LNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            +N+ R         V++  ER    WV+++ +
Sbjct: 1436 VNRER--FGTLKGVVEKWLERNGRQWVQMDSL 1465



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 23  AEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDG 82
           A  L  L+A R  G+    +  Y +  E  +YDTV E+ Y  +V R R +   F+V D+G
Sbjct: 10  AALLAELRANRAAGKTRLST--YEVAEEEQLYDTVDEEGYKKIV-RGRLDEDDFVVGDEG 66

Query: 83  LGYGDEGQEE------DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
            GY D+G+EE       +  A   S  ++    G+ + +K+  ++  +K+ ++ + K
Sbjct: 67  EGYVDDGREEWDDDQGKYHYAATDSEGEERPAKGKAAKRKREEDEEKRKKIDKGISK 123


>gi|449296808|gb|EMC92827.1| hypothetical protein BAUCODRAFT_96163 [Baudoinia compniacensis UAMH
            10762]
          Length = 1474

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1209 (35%), Positives = 633/1209 (52%), Gaps = 112/1209 (9%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++DDG+L F+  D  E       G+L LFGKVK     T+ SC V V N+ R +Y +P  
Sbjct: 338  LEDDGTLRFFWTDYTEV-----NGSLCLFGKVKNRTKGTYVSCFVKVDNILRKLYFLP-- 390

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                        ++  +      +   ++ DV      E+   +    V+ + + P  R+
Sbjct: 391  ------------REHRQRHGRDTSDEVEMSDVY----EEVDGLMTKFKVNMHKIKPCSRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   +IP   +Y LK+ YP+  P LP  + GE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELPDIPREADY-LKLLYPYDKPALPMGMTGETFSHVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A    SWCK E+ V  P  I     S ++ E PP+T+ ++ L+T  N +
Sbjct: 494  WLKIEG-ADFQAVNNASWCKLELQVTKPNGITTVGDSDNL-EAPPMTLMSLALRTTMNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++ NEI+ ASV      ++      ++   P  L   T       G +P+GF  EA    
Sbjct: 552  ENKNEILVASVRFYPDVQL------TDTTPPEKLPSRTFTFMRPNGEYPLGFKLEAEKHK 605

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             +     +  E +E ALL++L+  +   D D  VGH +   D +VLL R +  + P   W
Sbjct: 606  GQ-----ILMEKNEPALLSKLLAIIQMHDPDAFVGHKLDDVDYNVLLTRMRDRKTPG--W 658

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYS 741
             +IGRLKRS+ PK   G+   G G+        AGRLLCD    + D+ + +     S+S
Sbjct: 659  HRIGRLKRSDWPK-NVGK---GGGSFFAERHLAAGRLLCD---LANDMGKSIMTACQSWS 711

Query: 742  LTQLAKTQL--NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L ++ K  L  N  RKE+     L M  T E LM  ++  E D +    +     +LPL+
Sbjct: 712  LDEMVKLYLGGNHVRKEIDNDKALAMAATREGLMNYVKMCELDTYFIAAIALKRQLLPLS 771

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            + LTN++GN W +TL G RA+R EY+LLH F   K+I PDK          K  +N  +E
Sbjct: 772  KVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKFICPDKV-------YGKGAANKKLE 824

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D       N D     DT   D         + GGLV EP+KGLYDK+IL++DFNSLYPS
Sbjct: 825  D----TADNGDEADAADTKKKDK--------FKGGLVFEPEKGLYDKFILVMDFNSLYPS 872

Query: 920  IIQEYNICFTTVERSPDGL----VPHLP-SSKTTGVLPELLKNLVQRRRMVKTWMK--TA 972
            IIQE+NICFTTV+RS  G     VP +P  +   G+LP L++ LV RRR VK  MK  + 
Sbjct: 873  IIQEFNICFTTVDRSDIGADEDKVPEVPEDTANKGILPRLIRTLVSRRREVKKLMKDKSI 932

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
            S  + Q  D++QQALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL+ST +L ++ 
Sbjct: 933  SEEQRQTWDVKQQALKLTANSMYGCLGYTKSRFYARPLAALTTSKGREILQSTKELAESA 992

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
              L VIYGDTDS+M+++  D+I +A  +  +  + VN++Y+ LEI++D +++R+LL  KK
Sbjct: 993  HALRVIYGDTDSVMVNTNKDNILEAIKMGNEFKKAVNERYELLEIEIDNIFRRLLLHAKK 1052

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            KYAA+ +   +G+  E +E KGLDM RR++  LSK+     L+ +LS    E VV  IH+
Sbjct: 1053 KYAAINMVEDNGVWREKMEVKGLDMRRREYCQLSKDTSTELLNYLLSGEEPEKVVSHIHD 1112

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L  + E MRS  +   KY I   L K P+ YP+A + P VQVAL+L   G      A D
Sbjct: 1113 HLRSLGEKMRSNAIPAYKYTIYTQLGKAPKEYPNANSMPSVQVALKLMAKGKQV--RAKD 1170

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             + +IIC   G+S GS+   A+ A   DE+   D   + D++YY  +QI P V RLC  I
Sbjct: 1171 VMSFIIC---GSSGGSAENAAKNACTLDEVLAKDSGLVPDVEYYLHKQILPPVERLCVPI 1227

Query: 1273 EGTSPERLADCLGLDPSKFQ----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCP 1328
            EGT+   LA+CLGLD SK++    SK SE    D  ++L   V D  R++ CE L L C 
Sbjct: 1228 EGTNVSLLAECLGLDTSKYRLSGASKTSEGGRGDEITTLESQVPDHIRFKECEGLGLLCL 1287

Query: 1329 SCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCP--KCPEEVEAGRISPGMIANQ 1386
             C   F+   +            S PE E      +      CP E     IS   ++ Q
Sbjct: 1288 GCKRHFEFRGLNHQ-----QPSTSTPEEETTPMAVVAHTGLTCPREDCRRTISTLALSAQ 1342

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     S YY   ++CDD  C   T  +++   R +G   +G        C+GR+  
Sbjct: 1343 LEAQIRRHTSRYYAAYLICDDAACGIRTRQMSVYGHRCLG--PKGLAHG----CSGRMRF 1396

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISA----KIPLEKELNKIRPVVALAASTVQRI 1499
            +Y E  LY QL +   L D ++ + K+ +      K+ +  ELN+ R    +    V+  
Sbjct: 1397 EYGEKALYNQLLFLQGLFDVEKAVGKLGVKGEEDEKVKVMAELNRER--FGVCREVVKAY 1454

Query: 1500 RERCAYGWV 1508
             ++  +GWV
Sbjct: 1455 LDKSGWGWV 1463



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 8/108 (7%)

Query: 21  ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
           +RAE L +L+ALR+ G+   D+  Y ++  + IY+TV +++Y  +V R+R +   F+VDD
Sbjct: 4   SRAERLAQLRALRKAGKTGFDA--YEVQEADSIYETVDDEQYKQVV-RKRLDEDDFVVDD 60

Query: 81  DGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
           +G GY D+G+ EDW    +    DDES   +  + KQ    + K+E++
Sbjct: 61  NGAGYADDGR-EDWQDQRV-VYEDDES---EEDLPKQSKAAKRKREDD 103


>gi|83774919|dbj|BAE65042.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1453

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1578 (32%), Positives = 775/1578 (49%), Gaps = 215/1578 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++   +  Y ++ ++ IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKKRIST--YEVEEQDDIYEEVDDEGYKKII-RNRLDEDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWSVAGLPSSSDDESL--DGQRSIKKQRIEKRGKKENNQNVRKPNP 136
            DD+G GY D+G+E DW+V    S SDD  L  +G+ + +K+  +K+ K++ N  + K   
Sbjct: 58   DDNGEGYADDGRE-DWTVDYHDSESDDGDLPANGKAAKRKREEDKQRKEKINNGISKYFN 116

Query: 137  SLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSV 196
              + A+A                  K K     E E+ + ++L E   +        ++V
Sbjct: 117  KGSGASA-----------------PKPKPVATAEDEAFMADLLGEVDTNVVSNHVPTQNV 159

Query: 197  -SSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
              S  +  V V S   + +       +  ENSD ++   Q  + D+  +   L    D+ 
Sbjct: 160  IKSETRRKVRVLSPPLSHRPRPQKKQTKDENSDPMSPIGQKPDLDLDNDDGPLPVADDDD 219

Query: 256  TELT------------KRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
              ++            +R   + VK +  DE + D+ E  ++                  
Sbjct: 220  VPMSDPMPSSPVSKAVERKTAITVKTEDPDEEDNDLMEIAEVTGQHEAKTTSVNMAGSRP 279

Query: 288  --KISTE-------KDPLLS----ATAGWKEVSGGNMVLDEGKS------GLNCQESEFE 328
              KI  E         P+ +    A A W +V     VL    S       L  Q+    
Sbjct: 280  PPKIKKEAYTTPANSSPVKAMPDVANASWNDVRNKLNVLSSPASETRTFGKLRAQDV--- 336

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V+DDGSL  + +D  E       G+L LFGKV+   T  + S  V V N+ R +Y +P  
Sbjct: 337  VEDDGSLRMFWIDFTEV-----NGSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPR- 390

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                 +   K  +D +E           ++DV      E+   +  L V  + + P  R+
Sbjct: 391  -----EYRHKHGRDTDEE--------VDMEDVY----NEVDGMMSRLKVGMHKIKPCTRK 433

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y LK+ YP+  P LP + KGE F  + GT++S  E F++ + + GP 
Sbjct: 434  YAFEMPGVPKETEY-LKLLYPYDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPC 492

Query: 507  WLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            WL    + FS   A    SWCK+E  V  P  I     S+++ E PP+T+ ++  +T  N
Sbjct: 493  WLRFEGADFS---AVNNASWCKFECQVSKPALISPVPDSENL-EAPPLTLMSLAFRTQLN 548

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEA 622
             +++  EI+ AS      A++   +  ++   P  L    FTV+R + G  +PM F  E 
Sbjct: 549  VKENKQEILIAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPV-GSSYPMHFEAET 601

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 + G+ +L  E SE+ LL++ +    K+D DVL+GH +   DL +LL+R +  + P
Sbjct: 602  ---KRQRGTYIL--ERSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLNRLKEKKTP 656

Query: 683  SSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVS 739
               W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  S
Sbjct: 657  G--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQS 708

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L     R+E+     LK + T  + LM  + + +TD +    L+  L +L
Sbjct: 709  WSLTEMCNLYLGPGNVRQELDGEAALKTWATTKDGLMNFVNHCDTDTYFVAALVLRLQML 768

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++   +    K +   
Sbjct: 769  PLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSAKLQKAEVKLQDGD 828

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              +  + ++                             LV EP+KGLYD+++L++DFNSL
Sbjct: 829  DDDATDKKKKDKYKGG----------------------LVFEPEKGLYDRFVLVMDFNSL 866

Query: 917  YPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASG 974
            YPSIIQEYNICFTTVER+    V    S    G+LP L+  LV RRR VK  MK   A+ 
Sbjct: 867  YPSIIQEYNICFTTVERTATVRVFAEKSCGKQGILPRLIATLVGRRREVKKLMKDKRATP 926

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
             ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++   
Sbjct: 927  EQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK-Q 985

Query: 1035 LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKY 1094
            L VIYGDTDS+MI++ +D ++ A  +  +  + VN++Y+ LEID+D +++R+LL  KKKY
Sbjct: 986  LRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFRRLLLHAKKKY 1045

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            AA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V+  +H+ L
Sbjct: 1046 AAINMTEMDGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQEIVLNRVHDYL 1105

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
              +   MR   V ++KYVI   L+K PE YP+ +  P VQVALR    G S      D +
Sbjct: 1106 RDLAGKMREFAVPVQKYVIYTKLSKRPEEYPNKETMPPVQVALRELARGKSV--RPNDVI 1163

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + RLCA I G
Sbjct: 1164 SYIVT--SGDSETSSLAPAKRSYTLQDVMKPDSGLNPDIEFYLLKQIFPPIERLCAPIPG 1221

Query: 1275 TSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSC-- 1330
            T   RLA+CLGLD  K+Q   S   +   +    L   + D  R+     L L+C SC  
Sbjct: 1222 TDAVRLAECLGLDVRKYQINTSSGGNQQNTDIFPLESQIPDSVRFETAARLTLTCRSCKE 1281

Query: 1331 SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQ 1390
             S F+  A  S +C +                 L CP    + +   ++   I  Q++ Q
Sbjct: 1282 KSVFEGLAASSHMCNA---------------NGLFCPNTACQKQFTVLT---IIAQLESQ 1323

Query: 1391 ADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTE 1447
                 S YY+G ++CDD  C   T  +++   R +G   RG    +   C GR+  +Y+E
Sbjct: 1324 IRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLG--PRG----HAEGCLGRMSYEYSE 1377

Query: 1448 ADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN--KIRPVVALAASTVQRIR----- 1500
              LY QL YF  L D  +        A++  EKE +  K   VVALA+    R       
Sbjct: 1378 KQLYNQLLYFAGLWDVDK--------ARVAAEKEASGEKKDSVVALASFNRARFETVKGV 1429

Query: 1501 -----ERCAYGWVKLNDI 1513
                 ++C   WV+++ +
Sbjct: 1430 VDAYLKKCGRQWVEMDSL 1447


>gi|350634362|gb|EHA22724.1| DNA polymerase alpha, catalytic subunit [Aspergillus niger ATCC 1015]
          Length = 1971

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1534 (32%), Positives = 754/1534 (49%), Gaps = 205/1534 (13%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            SA    L  L+ALR  G++   +  Y ++ +  IY+ V ++ Y  ++ R R +   F+VD
Sbjct: 2    SASRAKLAELRALRAAGKKRLST--YEVEEQGDIYEEVDDEGYKKII-RNRLDQDDFVVD 58

Query: 80   DDGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN------ 130
            D+G GY D+G+E   E  +  G   S DDE     ++ K++R E++ ++E   N      
Sbjct: 59   DNGEGYADDGREVWNERTADYGDSESEDDELPARGKAAKRKREEEKQRQEKINNGISKYF 118

Query: 131  -------VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFA 183
                     KP P  TA         L  + T+    +      VK        +L+   
Sbjct: 119  NSGAAPSAPKPKPVATAEDDAFMADLLGEVDTNVVPHRVPTRNIVKTEARRKVRILS--- 175

Query: 184  PDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVE 243
            P  ADR R+ R +  +            NS  V+   +  + N D  +  +   + D V 
Sbjct: 176  PPLADRTRKERPIKKD-----------ENSDPVSPVKDQPELNFDDDDGALPGMDDDDVP 224

Query: 244  ESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
             S  +   S  S  + ++     VK +  D+ + D+ E  ++                  
Sbjct: 225  MSDPMP-SSPISKAVERKSTTTPVKVEEFDDDDNDIMEIAQVTGQNDAKATSINMAGSRP 283

Query: 288  --KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE--------------VDD 331
              K+  E  P L++++  K +   +   ++ +S LN   S                 V++
Sbjct: 284  PPKLKKESTPALASSSPTKPMPEVDASWNDVRSKLNVLSSPASSEMRSFGKLRAQDVVEE 343

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP----- 384
            DGSL  + LD  E       G+L LFGKVK     ++ S  V V N+ R +Y +P     
Sbjct: 344  DGSLRMFWLDFTEV-----NGSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRH 398

Query: 385  -NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
             NG   +TDE + +E                       +  E+   +  L V  + + P 
Sbjct: 399  KNGR--ETDEEVDMED----------------------VYHEVDGMMSRLRVGMHKMKPC 434

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF    +P    Y LK+ YP+   PLP D+KGE F  + GT++S  E F++ + + 
Sbjct: 435  TRKYAFELPGVPKETEY-LKLFYPYDKSPLPMDVKGETFSHVFGTNTSLFEQFVLWKNIM 493

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I + +   A    SWCK+E     P  I     S+++ E PP+T+ +++ +T  
Sbjct: 494  GPCWLKIEE-ADFTAVNNASWCKFECQAAKPALISPVPDSENL-EAPPLTLMSLSFRTQL 551

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKE 621
            N  ++  EI+ AS      A++   +  ++   P  L    FTV+R   G  +PM F  E
Sbjct: 552  NVTENKQEILVAS------ARVYENVSLTDTTPPERLPCKTFTVMRPA-GSSYPMHFEAE 604

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
                 ++        E SE+ LL++ +    K+D DVL+GH +   DL +LL R +  + 
Sbjct: 605  -----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLSRLKEKKT 659

Query: 682  PSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREV 738
            P   W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  
Sbjct: 660  PG--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQ 711

Query: 739  SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSV 795
            S+SLT++    L K+  R+E+     LK + T  + LM  + + + D +    L+  L +
Sbjct: 712  SWSLTEMCDLYLGKENARQELDCEAALKTWATTKDGLMNFVNHCDADTYFIAALVLRLQM 771

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LPLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K    
Sbjct: 772  LPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLLK---- 823

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                    EE   E  + ++       +         GGLV EP+KGLYDK+IL++DFNS
Sbjct: 824  -------AEEKMQEGDDDESADKKKKDKY-------KGGLVFEPEKGLYDKFILVMDFNS 869

Query: 916  LYPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTW 968
            LYPSIIQEYNICFTTVER+          VP +P+S +  G+LP+L+  LV RRR VK  
Sbjct: 870  LYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREVKKL 929

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 930  MKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTK 989

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 990  ELAESK-QLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFRRL 1048

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V
Sbjct: 1049 LLHAKKKYAAINMTEVDGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQEVV 1108

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  +H+ L ++ E MR   V ++KYVI   L+K PE YP+ ++ P VQVALR    G S 
Sbjct: 1109 LNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPEEYPNKESMPPVQVALRELARGKSV 1168

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + Y++    G +  SS+  A+R+    ++ K D     DI++Y  +QI P + 
Sbjct: 1169 --RPNDVISYVVT--NGDAETSSLAPAKRSYTLQDVMKPDSGLKPDIEFYLLKQIFPPIE 1224

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEP 1322
            RLCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     
Sbjct: 1225 RLCAPIPGTDAVRLAECLGLDVRKYQINSSS--GSNQQNADIFPLESQIPDSVRFENATR 1282

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L+C  C   S F+  A  + +C                  T     CP +      S 
Sbjct: 1283 LTLTCRFCKEKSVFEGLAQSTHMC------------------TANGIICPNQACQKPFSV 1324

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     S YY+G ++CDD  C   T  +++   R +G   RG    +   C
Sbjct: 1325 LTIVAQLEAQIRAQTSKYYEGWLVCDDTACGNRTRQISVYGHRCLG--PRG----HAEGC 1378

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKME 1471
             GR+  +Y+E  +Y QL YF  L D  +  +  E
Sbjct: 1379 LGRMTYEYSEKQMYNQLLYFAGLWDVDKARKAAE 1412


>gi|451847719|gb|EMD61026.1| hypothetical protein COCSADRAFT_149455 [Cochliobolus sativus ND90Pr]
          Length = 1470

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1564 (32%), Positives = 771/1564 (49%), Gaps = 183/1564 (11%)

Query: 23   AEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDG 82
            A  L  L+A R  G+    +  Y +  E  +YD V E+ Y  +V R R +   F+V D+G
Sbjct: 10   AALLAELRANRAAGKTRMST--YEVAEEEQLYDEVDEEGYKKIV-RGRLDEDDFVVGDEG 66

Query: 83   LGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAA 142
             GY D+G+EE     G    +  ES D      K +  KR ++E+ +  +K +  ++   
Sbjct: 67   EGYVDDGREEWDDDQGRYRYAGTESEDEDERPAKGKAAKRKREEDEEKRKKIDNGIS--- 123

Query: 143  AMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF------------APDEADRE 190
                 +  SA   + AM  KSK       +  +D++L E              P + +  
Sbjct: 124  -----KYFSA--KNAAMAPKSKPVATAADKDFMDDLLGEIDTNPTLTSTIRTRPIKTEAR 176

Query: 191  RRRRSVSSNI-KSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELK 249
            R+ R +S  I +S  +    +TN            E ++  ++ + I + DV      L+
Sbjct: 177  RKTRLLSPPISESRPAATKRRTNDSDSHMPGTPPAEAAEADDDGLPIFHDDVPMSDPPLQ 236

Query: 250  WESDNSTELTKRDNFVEVKEKVKD--EVNEDVKEC-----------KKLNAKISTEKDPL 296
                      +    V+++E+  D  E++E   +            ++  AKI  E  P 
Sbjct: 237  SSPVAKAVERRTQPGVKIEEEEDDLMEISEPTGQLGAPVASVNMAGRRPIAKIKQENVPT 296

Query: 297  LSATA------------GWKEVSGGNMVLDE------GKSGLNCQESEFEVDDDGSLPFY 338
             + ++             W +V+    V+        G   L  Q++   +++DGSL  +
Sbjct: 297  PAGSSPTKPSATNIDASSWNDVTSNLNVMSSPAPQTAGAGKLQPQDA---LEEDGSLRMF 353

Query: 339  ILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             +D  E       G+L LFGKVK      + SC + + N+ R +Y +P     +  ++  
Sbjct: 354  WIDYTEL-----NGSLCLFGKVKDRKSGNYVSCFLKIDNILRKLYFLPR----EYRQVRG 404

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            +  D E           +L DV+  + + ++   +NL    + + P  R+YAF  A+IP 
Sbjct: 405  VTTDEE----------IELSDVSDEVDSIMSKHRVNL----HKIKPCTRKYAFELADIPK 450

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
              +Y LK+ Y +   PL  DL GE F  + GT++S  E F++ + + GP WL I      
Sbjct: 451  EADY-LKLLYGYDKMPLSTDLTGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDAPDFG 509

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
            P     SWCK E  V  P +I V S+S ++ + PP+T+ +++L+T FN + +  EI+ AS
Sbjct: 510  PVAN-ASWCKLEAQVVKPNNITVLSASDNL-DAPPMTLMSLSLRTTFNAKDNKQEILMAS 567

Query: 577  VVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             +      +   TP+   + K       FT++R  +G  FP+GF  E      K   N +
Sbjct: 568  AMIYDNFSLTDTTPVDQMQCKS------FTIMRP-NGPAFPIGFQGEV----EKIKGN-M 615

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
              + +E+ LL+ LM    + D DVLVGH +   D  VLL+R +  + P   W +IGRLKR
Sbjct: 616  YLKKTEQELLSLLMAMFQRHDPDVLVGHRLDDVDYSVLLNRLREKKTPG--WHRIGRLKR 673

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQ 749
            S+ PK   G+   G G+        +GRLLCD    + D+ + +     S+SL ++ +  
Sbjct: 674  SDWPKTM-GK---GGGSFFAEKQLASGRLLCD---LANDMGKSLMPKCQSWSLEEMCQLG 726

Query: 750  LNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
            LNK R+E+     LK + T  + L+  +++ + DA+    +   + +LPL++ LTN++GN
Sbjct: 727  LNKRREELDNEAALKTWATTKDGLLNYVKHCQADAYFIAAIAIKVQMLPLSKVLTNLAGN 786

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
             W +TL G RA+R EY+LLH F   KYI PDK     + K  ++ +         ++   
Sbjct: 787  SWARTLSGTRAERNEYILLHEFYRNKYICPDKQWGKSKVKAEEEAAEGEEGADAKKKDKF 846

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
            +                         LV EP+KGLYDK+IL++DFNSLYPSIIQEYNICF
Sbjct: 847  KGG-----------------------LVFEPEKGLYDKFILVMDFNSLYPSIIQEYNICF 883

Query: 929  TTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDI 982
            TTVERS     D  VP +PS +  G+LP L+  LV RRR VK  MK   A+  ++   DI
Sbjct: 884  TTVERSDISEDDDKVPEVPSDQDQGILPRLIATLVSRRREVKKLMKAKDATPDQLATWDI 943

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR T ++ +    L VIYGDT
Sbjct: 944  KQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRKTKEMAEEKA-LRVIYGDT 1002

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            DS+MI++ +D+I  A  +  +  +EVN  Y+ LEID+D +++R+LL  KKKYAA+ +   
Sbjct: 1003 DSVMINTNVDNIQDAIKLGNEFKKEVNDSYRLLEIDIDNVFRRILLHAKKKYAAINMVPV 1062

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG   E +E KGLDM RR++  LSKE     L+ +LS    E VVE IHN L ++ + MR
Sbjct: 1063 DGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGEDPEVVVEKIHNHLRELSKQMR 1122

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
               +   KY I   L K P+ YP+  + P VQVALRL   G      A D + +II    
Sbjct: 1123 EYVIPPRKYTIYTQLGKNPKEYPNGNSMPSVQVALRLMAKG--KHVKAKDVMSFIIT--- 1177

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
            G SSGS+   A+ A   DE+ K D     DIDYY  +QI P V RLCA I GT+   LA 
Sbjct: 1178 GESSGSAENAAKNAYPVDEVLKPDSGLKPDIDYYLHKQILPPVERLCAPISGTNITLLAA 1237

Query: 1283 CLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            CLGLD SK++       +   +    L   + D  R++ C PL L C +C++ F    + 
Sbjct: 1238 CLGLDTSKYRVSTVSGGAQQETEIHPLESQIPDSVRFQSCSPLWLRCRTCTTVFPFQGLS 1297

Query: 1341 SSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYK 1400
                      P+ P T      +    +CP E     +    +  Q++      V+ YY 
Sbjct: 1298 ----------PTSPTTASLQTISHSGIQCPAEGCGMTLQNISVVAQLESAIRQVVASYYA 1347

Query: 1401 GLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            G ++CDD  C   T S+++   R +G   +G        C G++  +  E D++ QL Y+
Sbjct: 1348 GYVLCDDPQCSNRTRSISVYGHRCLG--PKGLA----RDCLGKMTYEIKERDVWNQLLYY 1401

Query: 1458 CHLLDTQR------GI--EKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVK 1509
              L D  R      GI  E ME   KI +  E+N+ R         V++  E+    WV+
Sbjct: 1402 QSLFDADRAGKMDGGIKSEDMERREKIKVLAEVNRER--FDTLKGVVEKWLEKNGRQWVQ 1459

Query: 1510 LNDI 1513
            ++ +
Sbjct: 1460 MDSL 1463


>gi|330918671|ref|XP_003298310.1| hypothetical protein PTT_08978 [Pyrenophora teres f. teres 0-1]
 gi|311328568|gb|EFQ93598.1| hypothetical protein PTT_08978 [Pyrenophora teres f. teres 0-1]
          Length = 1446

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1231 (36%), Positives = 653/1231 (53%), Gaps = 130/1231 (10%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKN 375
            +G+   + +  V++DGSL F+ +D  E       G L LFGKVK   +  + SC V V N
Sbjct: 304  TGVGKMQPQDAVEEDGSLRFFWIDYTEI-----NGNLCLFGKVKDNKSGNYSSCFVKVDN 358

Query: 376  MQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV 435
            + R +Y +P        E   +   A +  I        L DV+  + + ++   +NL  
Sbjct: 359  ILRKLYFLPR-------EYRHVRGVATDEEIG-------LSDVSDEVDSIMSKHRVNL-- 402

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL 495
              + + P  R+YAF   +IP   +Y LK+ Y +   PL +DLKGE F  + GT++S  E 
Sbjct: 403  --HKIKPCTRKYAFELPDIPKEADY-LKLLYGYDKMPLSSDLKGETFSHVFGTNTSLFEQ 459

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F++ + + GP WL I       A    SWCK E+ V  P +I V S+S ++ + P +T+ 
Sbjct: 460  FVLWKNIMGPCWLKIDN-PDFGALSNASWCKLEVLVSKPNNITVMSASDNL-DAPSMTLM 517

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGI 613
            +++L+T FN + +  EI+ AS +      +   TP+   + K       FT++R  +GG 
Sbjct: 518  SLSLRTTFNAKDNKQEILMASAMIYDNFSLTDTTPVDQMQCKS------FTIMRP-NGGS 570

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
            FP+GF KE      K   N +  + +E+ LL+ LM    + D DVL+GH +   D  VLL
Sbjct: 571  FPIGFEKEV----EKIKGN-MYLKKTEQELLSLLMAMFQRHDPDVLIGHRLDDVDYSVLL 625

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
             R +  + P   W +IGRLKRS+ PK   G+   G G+        +GRLLCD    + D
Sbjct: 626  SRLREKKTPG--WHRIGRLKRSDWPK-NMGK---GGGSFFAEKQLASGRLLCD---LAND 676

Query: 734  LLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSM 787
            L + +     S+SL ++ +  LNK R+E+     LK + T  E L+  +++ + DA+   
Sbjct: 677  LGKSLMTKCQSWSLEEMCQLVLNKRREELDNDAALKTWATTKEGLLNYVKHCQADAYFIA 736

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             +   + +LPLT+ LTN++GN WG+TL G RA+R EY+LLH F   KYI PDK     + 
Sbjct: 737  AISIKVQMLPLTKVLTNLAGNSWGRTLSGTRAERNEYILLHEFYKNKYICPDKQWGKSKA 796

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
            K+ ++ +         ++   +                         LV EP+KGLYDK+
Sbjct: 797  KVDEEAAEGEEGADAKKKDKFKGG-----------------------LVFEPEKGLYDKF 833

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            IL++DFNSLYPSIIQE+NICFTTVERS     D  VP +P+ +  G+LP L+  LV RRR
Sbjct: 834  ILVMDFNSLYPSIIQEFNICFTTVERSDLSEDDDKVPEVPTHQDQGILPRLIATLVSRRR 893

Query: 964  MVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREI
Sbjct: 894  EVKKLMKAKDATPDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREI 953

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            LR T D+ +    L VIYGDTDS+MI++ +D+I  A  +  +  +EVN  Y+ LEID+D 
Sbjct: 954  LRKTKDMAEEKA-LRVIYGDTDSVMINTNVDNIQDALKLGNEFKKEVNDSYRLLEIDIDN 1012

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +++R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKE     L+ +LS  
Sbjct: 1013 VFRRILLHAKKKYAAINMVPVDGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGE 1072

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E VVE+IHN L ++ + MR   +   KY I   L K P  YP+  + P VQVALRL+ 
Sbjct: 1073 DPEVVVENIHNHLRELSKQMREYAIPSRKYTIYTQLGKNPNEYPNGGSMPSVQVALRLQA 1132

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
             G      A D + +II    G SSGS+   A+ A   DE+ K D     DIDYY  +QI
Sbjct: 1133 KG--KHVKAKDVMSFIIT---GESSGSAENAAKNAYPVDEVLKPDSGLKPDIDYYLHKQI 1187

Query: 1262 HPVVSRLCASIEGTSPERLADCLGLDPSKFQ-SKPSETMSSDPS-SSLLFAVGDEERYRG 1319
             P V RLCA I GT+   LA CLGLD SK++ S  S +   D     L   + D  R++ 
Sbjct: 1188 LPPVERLCAPISGTNVTLLAACLGLDTSKYRVSTVSGSAQQDTEIHPLESQIPDSVRFQC 1247

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            C PL L C +C++ F    + S+   ++S +       +N    ++CP        G I 
Sbjct: 1248 CSPLWLRCRACTTVFPFQGLSSTSPTTLSLQ----TVSHN---GIQCPA----PNCGNIL 1296

Query: 1380 PGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYP 1435
            P + +  QV+      ++ YY G ++CDD  C   T S+++   R +G   +G       
Sbjct: 1297 PNISVVAQVESSIRQILAAYYAGYVVCDDPQCSNRTRSISVYGHRCLG--PKGLA----R 1350

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLLDTQR-------------GIEKMEISAKIPLEKEL 1482
             C G++  +  E D++ QL YF  L D  R               E++E   KI +  E+
Sbjct: 1351 DCLGKMSYEIKERDVWNQLLYFASLFDVDRVGKGEGGGGTAGVKAEELERREKIKVLAEV 1410

Query: 1483 NKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            N+ R   +     V +  ER    WV+++ +
Sbjct: 1411 NRER--FSTLKGVVDKWLERNGRQWVQMDSL 1439



 Score = 43.5 bits (101), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 23  AEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDG 82
           A  L  L+A R  G+    +  Y +  E  +YDTV E+ Y  +V R R +   F+V D+G
Sbjct: 10  AALLAELRANRAAGKTRLST--YEVAEEEQLYDTVDEEGYKKIV-RGRLDEDDFVVGDEG 66

Query: 83  LGYGDEGQEE------DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
            GY D+G+EE       +  A   S  ++    G+ + +K+  ++  +K+ +  + K
Sbjct: 67  EGYVDDGREEWDDDQGKYHYAATDSEGEERPAKGKAAKRKREEDEEKRKKIDNGISK 123


>gi|303315657|ref|XP_003067833.1| DNA polymerase alpha catalytic subunit, putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107509|gb|EER25688.1| DNA polymerase alpha catalytic subunit, putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1463

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1564 (31%), Positives = 762/1564 (48%), Gaps = 181/1564 (11%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++      Y ++ E  IY+ V E+ Y  +V R+R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKKR--LATYEVEEEGDIYEEVDEEGYKNVV-RQRLDRDDFVV 57

Query: 79   DDDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEK-RGKKENN------- 128
            DD+G GY D+G+EE  D       + SD+  L G+ + +K+  +K R +K NN       
Sbjct: 58   DDNGEGYADDGREEWDDRRRVDSGTDSDEPPLRGKAAKRKREEDKQRREKINNGINKYFS 117

Query: 129  -----QNVRKPNPSLTA-----AAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEV 178
                  N  KP  + TA      A ++G+  ++ + +  ++ K  K E  ++   +   +
Sbjct: 118  GAYGTSNASKPKRNATAEDEAFMADLLGEVDVNVVPSRVSVKKPVKSETRRKVRIISPPL 177

Query: 179  LAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDL----INNFV 234
              E  P +   ++      ++++    ++       L       V  +       +   V
Sbjct: 178  SQERTPKKVQAKKEPTPHKADVELKSDIDFDDDVGLLPVGDDEDVPMSDPPPSSPVAKAV 237

Query: 235  QIQNCDVVEESKELKWESDNSTELT-----------KRDNFVEVKEKVKDEVNEDVKECK 283
            + +N  +V++  E   + D+   +T            R N    +   K +V E      
Sbjct: 238  ERKNASLVKKEDEGADDIDDEDLVTIEATGHHENNATRVNMTGKRPAPKLKVKESFYPSP 297

Query: 284  KLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNC---QESEFEVDDDGSLPFYIL 340
              +  +    D + +++  W +++    VL    S ++      ++  V+ DGSL F+ L
Sbjct: 298  ATSPPVRANSDAIDASS--WTDITRKLNVLSSPASDMHAFGKLRAQDAVETDGSLRFFWL 355

Query: 341  DAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            D  E       G+L LFGKVK    S   S  V + N+ R +Y +P        +    E
Sbjct: 356  DYTEV-----NGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYRLHHGQNTDDE 410

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             D E+                  +  E+   +  L V+ + + P  R+YAF    IP   
Sbjct: 411  IDMED------------------VSNEVDELMTKLRVNVHKIKPCTRKYAFELPNIPKKA 452

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y LK+ YP+  P LP D+KGE F  + GT+++  E F++ + + GP WL I   +   A
Sbjct: 453  KY-LKLMYPYDKPVLPIDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIED-ADFTA 510

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
                SWCK E  V  P  I   S ++++ + P +T+ ++ L+T  N +++  EI++ S  
Sbjct: 511  VSGASWCKLECQVSQPALISSISDAENL-DTPTLTLMSLALRTQLNVKENKQEILAMSAR 569

Query: 579  CCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
                  +  P        P  L    FTV+R L G  +P+GF  E     ++        
Sbjct: 570  VYENVSLTDPT------PPAKLPCKTFTVMRPL-GPTYPIGFEAE-----TRKHRGTFML 617

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
            E SE+ LL++ +    K+D DV++GH +   DL VL++R +  R P   W +IGR+KRSE
Sbjct: 618  EKSEQFLLSKFLALFEKMDPDVVMGHQLQEVDLTVLINRLKEKRTPG--WHRIGRMKRSE 675

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQLN--K 752
             PK  KG   F           +AGRL+CD    +    +++  S+SLT++ +  L    
Sbjct: 676  WPKNFKGTGFFAE------RHLVAGRLICDIGNDMGKSLMMKCQSWSLTEMCQLYLGDGN 729

Query: 753  DRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
             R+++     LK + T  E LM  I + E D +    L+  L +L LT+ LTN++GN W 
Sbjct: 730  TRRDIDNEAALKTWATSKEGLMNYINHAEADTYFIAALVLKLQMLSLTKVLTNLAGNSWA 789

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G RA+R EY+LLH F   KYI PDK+    + KM              EE   ED 
Sbjct: 790  RTLMGTRAERNEYILLHEFYRNKYICPDKYFGKSQPKM--------------EEYEGEDD 835

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
              D                Y GGLV EP+KGLYDKY+L++DFNSLYPSIIQEYNICFTTV
Sbjct: 836  GGDKKKKD----------KYKGGLVFEPEKGLYDKYVLVMDFNSLYPSIIQEYNICFTTV 885

Query: 932  ERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
             R        +  VP +P+ +  G+LP L+  LV RRR VK  MK   A+  ++   D +
Sbjct: 886  NRELVSENENEEKVPEVPADQEQGILPRLISTLVSRRREVKKLMKNKRATPEELALWDTK 945

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL++T +L + N  L VIYGDTD
Sbjct: 946  QLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNTKELAEKN-QLRVIYGDTD 1004

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI++ +D++ +A  +  +  + VN  YK LEID+D +++R+LL  KKKYAA+ +   D
Sbjct: 1005 SVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRLLLHAKKKYAAINMTEVD 1064

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G   + +E KGLDM RR++  LSKEV    L++ILS    E V+  +++ L ++ + M+ 
Sbjct: 1065 GKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEILSGDDTEVVLGKVYDYLRELTQKMKE 1124

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              + ++KYVI   L+K P+ YP+ ++ P VQVALR    G +      D + YI+    G
Sbjct: 1125 FTIPVQKYVIFTKLSKRPDEYPNKESMPPVQVALRELARGKTV--RPNDVISYIVT--SG 1180

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             S  SS+  A+R+  P ++ K D     DI+YY  +QI P + RLCA I GT   +LA+C
Sbjct: 1181 DSETSSLQPAKRSYTPQDVMKPDSGLKPDIEYYLLKQIFPPIERLCAPIPGTDAVQLAEC 1240

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA-----VGDEERYRGCEPLILSCPSCS--STFDC 1336
            LGLD  K+Q     T SS    SL        + D  R+       L C +C   + F+ 
Sbjct: 1241 LGLDVRKYQIN---TSSSHGQQSLELCPLESQIPDSLRFEKAARFTLRCRACHERTVFEG 1297

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
              + + IC                 + L CP          IS   I  Q++ Q     +
Sbjct: 1298 LNISTDICTP---------------KGLVCPNSNCRKPFSVIS---IVAQLESQIRAQTT 1339

Query: 1397 MYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             YY+G ++CDD  C   T  +++   R +G   R         C GR+  +YTE  LY Q
Sbjct: 1340 RYYEGWIVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCLGRMSYEYTEKQLYNQ 1393

Query: 1454 LTYFCHLLDTQRGIEKMEISA------KIPLEKELNKIRPVVALAASTVQRIRERCAYGW 1507
            L YF  L D  +     E  A      K+    E N+ R         V    ++C   W
Sbjct: 1394 LLYFATLWDVDKAKATAEKEASGEKKEKVLALVEWNRTR--FGTMKGVVDEYLKKCGRQW 1451

Query: 1508 VKLN 1511
            V+++
Sbjct: 1452 VEMD 1455


>gi|119178034|ref|XP_001240726.1| hypothetical protein CIMG_07889 [Coccidioides immitis RS]
 gi|392867311|gb|EAS29457.2| DNA polymerase (pol2) [Coccidioides immitis RS]
          Length = 1463

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1569 (32%), Positives = 759/1569 (48%), Gaps = 191/1569 (12%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++      Y ++ E  IY+ V E+ Y  +V R+R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKKR--LATYEVEEEGDIYEEVDEEGYKNVV-RQRLDRDDFVV 57

Query: 79   DDDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEK-RGKKENN------- 128
            DD+G GY D+G+EE  D       + SD   L G+ + +K+  +K R +K NN       
Sbjct: 58   DDNGEGYADDGREEWDDRRRVDSGTDSDGPPLRGKAAKRKREEDKQRREKINNGINKYFS 117

Query: 129  -----QNVRKPNPSLTA-----AAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEV 178
                  N  KP  + TA      A ++G+  ++ + +   + K  K E  ++   +   +
Sbjct: 118  GAYGTSNASKPKRNATAEDEAFMADLLGEVDVNVVPSRVPVKKPVKSETRRKVRIISPPL 177

Query: 179  LAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDL----INNFV 234
              E  P +   ++     +++++    ++       L       V  +       +   V
Sbjct: 178  SQERTPKKVQAKKEPTPHNADVEMKSDIDFDDDVGLLPVGDDEDVPMSDPPPSSPVAKAV 237

Query: 235  QIQNCDVVEESKELKWESDNSTELT------KRDNFVEVKEKVKDEVNEDVKECKKLNAK 288
            + +N  +V++ +E   + D+   +T        +N   V    K       +   KL  K
Sbjct: 238  ERKNASLVKKEEESADDIDDEDLVTIEATGHHENNATRVNMASK-------RPAPKLKVK 290

Query: 289  ISTEKDPLLSATA----------GWKEVSGGNMVLDEGKSGLNC---QESEFEVDDDGSL 335
             S    P  S  A           W +++    VL    S ++      ++  V+ DGSL
Sbjct: 291  ESFYPSPATSPPARANSDAIDASSWTDITRKLNVLSSPASDMHAFGKLRAQDAVETDGSL 350

Query: 336  PFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
             F+ LD  E       G+L LFGKVK    S   S  V + N+ R +Y +P        +
Sbjct: 351  RFFWLDYTEV-----NGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYRLHHGQ 405

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
                E D E+                  +  E+   +  L V+ + + P  R+YAF    
Sbjct: 406  NTDDEIDMED------------------VSNEVDELMTKLRVNVHKIKPCTRKYAFELPN 447

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            IP    Y LK+ YP+  P LP D+KGE F  + GT+++  E F++ + + GP WL I   
Sbjct: 448  IPKKAQY-LKLMYPYDKPVLPTDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIED- 505

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
            +   A    SWCK E  V  P  I   S ++++ + P +T+ ++ L+T  N +++  EI+
Sbjct: 506  ADFTAVSGASWCKLECQVSQPALISSVSDAENL-DTPTLTLMSLALRTQLNVKENKQEIL 564

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
            + S        +  P        P  L    FTV+R L G  +P+GF  E     ++   
Sbjct: 565  AVSARVYENVSLTDPT------PPAKLPCKTFTVMRPL-GPTYPIGFESE-----TRKHR 612

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
                 E SE+ LL++ +    K+D DV++GH +   DL VL++R +  R P   W +IGR
Sbjct: 613  GTFMLEKSEQFLLSKFLALFEKMDPDVVMGHQLQEVDLTVLINRLKEKRTPG--WHRIGR 670

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQ 749
            +KRSE PK  KG   F           +AGRL+CD    +    +++  S+SLT++ +  
Sbjct: 671  MKRSEWPKNFKGTGFFAE------RHLVAGRLICDIGNDMGKSLMMKCQSWSLTEMCQLY 724

Query: 750  LN--KDRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            L     R+++     LK + T  E LM  I + E D +    L+  L +L LT+ LTN++
Sbjct: 725  LGDGNTRRDIDNEAALKTWATSKEGLMNYISHAEADTYFIAALVLKLQMLSLTKVLTNLA 784

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN W +TL G RA+R EY+LLH F   KYI PDK+    + KM              EE 
Sbjct: 785  GNSWARTLMGTRAERNEYILLHEFYRNKYICPDKYFGRSQPKM--------------EEY 830

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
              ED   D                Y GGLV EP+KGLYDKY+L++DFNSLYPSIIQEYNI
Sbjct: 831  EGEDDGGDKKKKD----------KYKGGLVFEPEKGLYDKYVLVMDFNSLYPSIIQEYNI 880

Query: 927  CFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQ 978
            CFTTV R        +  VP +P+ +  G+LP L+  LV RRR VK  MK   A+  ++ 
Sbjct: 881  CFTTVNRELVSENENEEKVPEVPADQEQGILPRLISTLVSRRREVKKLMKNKRATPEELA 940

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
              D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL++T +L + N  L VI
Sbjct: 941  LWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNTKELAEKN-QLRVI 999

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDS+MI++ +D++ +A  +  +  + VN  YK LEID+D +++R+LL  KKKYAA+ 
Sbjct: 1000 YGDTDSVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRLLLHAKKKYAAIN 1059

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +   DG   + +E KGLDM RR++  LSKEV    L++ILS    E V+  +++ L ++ 
Sbjct: 1060 MTEVDGKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEILSGDDTEVVLGKVYDYLRELT 1119

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            + M+   + ++KYVI   L+K P+ YP+ +  P VQVALR    G +      D + YI+
Sbjct: 1120 QKMKEFTIPVQKYVIFTKLSKRPDEYPNKETMPPVQVALRELARGKTV--RPNDVISYIV 1177

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
                G S  SS+  A+R+  P ++ K D     DI+YY  +QI P + RLCA I GT   
Sbjct: 1178 T--SGDSETSSLQPAKRSYTPQDVMKPDSGLKPDIEYYLLKQIFPPIERLCAPIPGTDAV 1235

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFA-----VGDEERYRGCEPLILSCPSCS-- 1331
            +LA+CLGLD  K+Q     T SS    SL        + D  R+       L C +C   
Sbjct: 1236 QLAECLGLDVRKYQIN---TSSSHGQRSLELCPLESQIPDSLRFEKAARFTLRCRACHER 1292

Query: 1332 STFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
            + F+   + + IC                 + L CP          IS   I  Q++ Q 
Sbjct: 1293 TVFEGLNISTDICTP---------------KGLVCPNSNCRKPFSVIS---IVAQLESQI 1334

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEA 1448
                + YY+G ++CDD  C   T  +++   R +G   R         C GR+  +YT+ 
Sbjct: 1335 RAQTTRYYEGWIVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCLGRMSYEYTDK 1388

Query: 1449 DLYKQLTYFCHLLDTQRGIEKMEISA------KIPLEKELNKIRPVVALAASTVQRIRER 1502
             LY QL YF  L D  +     E  A      K+    E N+ R         V    ++
Sbjct: 1389 QLYNQLLYFATLWDVDKAKATAEKEASGEKKEKVLALVEWNRTR--FGTMKGVVDEYLKK 1446

Query: 1503 CAYGWVKLN 1511
            C   WV+++
Sbjct: 1447 CGRQWVEMD 1455


>gi|169610559|ref|XP_001798698.1| hypothetical protein SNOG_08383 [Phaeosphaeria nodorum SN15]
 gi|111063539|gb|EAT84659.1| hypothetical protein SNOG_08383 [Phaeosphaeria nodorum SN15]
          Length = 1462

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1226 (35%), Positives = 656/1226 (53%), Gaps = 125/1226 (10%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKN 375
            +G+    SE  +++DGS+  + +D  E       G+L LFGKVK  +T  + SC V + N
Sbjct: 325  TGVGKMRSEDVLEEDGSVRMFWIDYTEI-----NGSLCLFGKVKDRTTGSYASCFVKIDN 379

Query: 376  MQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV 435
            + R +Y +P        E   +   A +  I        L DV+  L   ++   +NL  
Sbjct: 380  IMRKLYFLPR-------EHRHVRGVATDEEIG-------LSDVSDELDNIMSKHRVNL-- 423

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL 495
              + + P  R+YAF  A+IP   +Y +K+ Y +   PL +DL GE F  + GT++S  E 
Sbjct: 424  --HKIKPCTRKYAFELADIPKEADY-MKLLYGYDKMPLSSDLTGETFSHVFGTNTSLFEQ 480

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F++ + + GP WL I   +   A    SWCK EI V  P  I V S+S ++ + PP+T+ 
Sbjct: 481  FVLWKNIMGPCWLKIDG-ADFGAIHNASWCKLEIQVSKPNSITVLSNSDNL-DAPPMTLM 538

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGGI 613
            +++L+T FN +++  EI+ AS +      +   TP+   + K       FT++R  +G  
Sbjct: 539  SLSLRTSFNAKENKQEILMASAMVYDNFSLSDTTPIDQMQAKS------FTLMRP-NGTA 591

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
            FP GF  EA    +K   N    ++ E+ LL+ LM    + D DVL+GH +   D  VLL
Sbjct: 592  FPTGFQAEA----AKLKGNTKFVKT-EQELLSLLMAMFQRHDPDVLMGHRLDDVDYSVLL 646

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            +R +  + P   W +IGR+KRS+ PK   G+   G G+        +GRLLCD    + D
Sbjct: 647  NRLREKKTPG--WHRIGRVKRSDWPK-NLGK---GGGSFFAEKQLASGRLLCD---LAND 697

Query: 734  LLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSM 787
            L + +     S+SL ++ +  LN+ R+E+     LK + T  E L+  +++ + DA+   
Sbjct: 698  LGKSLMTKCQSWSLEEMCQLVLNQRREELDNEAALKSWATTKEGLLNYVKHCQADAYFIA 757

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             +   + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK       
Sbjct: 758  AISMKVQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEFHKNKYICPDK------- 810

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                 +S   VE+   E     DA              K+   + GGLV EP+KGLYDK+
Sbjct: 811  --QWGKSKIKVEEEAAEGEEGTDA--------------KKKDKFKGGLVFEPEKGLYDKF 854

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            IL++DFNSLYPSIIQE+NICFTTVERS     D  VP +P ++  G+LP L+  LV RRR
Sbjct: 855  ILVMDFNSLYPSIIQEFNICFTTVERSDLSEDDDKVPEVPDNQEQGILPRLIATLVSRRR 914

Query: 964  MVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREI
Sbjct: 915  EVKKLMKAKDATTDQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREI 974

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            LR T D+ +  + L VIYGDTDS+MI++ +D+I  A  +  +  + VN  Y+ LEID+D 
Sbjct: 975  LRRTKDMAEEKM-LRVIYGDTDSVMINTNVDNIQDALKLGNEFKKIVNDSYRLLEIDIDN 1033

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +++R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSK+     L+ +LS  
Sbjct: 1034 VFRRILLHAKKKYAAINMVPVDGKYIEKLEVKGLDMRRREYCALSKDTSTELLNFLLSGE 1093

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E VVE IHN L ++ + MR   V   KY I   L K P+ YP+  + P VQVAL+L+ 
Sbjct: 1094 DPEVVVEKIHNHLRELSKQMREYAVPTRKYTIYTQLGKNPKEYPNGNSMPSVQVALKLQA 1153

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
             G      A D + +II    G +SGS+   A+ A   DE+ K   +   DIDYY  +QI
Sbjct: 1154 KG--KHVKAKDVMSFIIT---GEASGSAENAAKNAYPVDEVLKPGSELKPDIDYYLHKQI 1208

Query: 1262 HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRG 1319
             P V RLCA I GT+   LA CLGLD SK++   +   + + +    L   + D  R++ 
Sbjct: 1209 LPPVERLCAPITGTNITLLAACLGLDTSKYRVNTTSGATQEETEVHPLESQIPDSVRFQA 1268

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            C  L L C  C++TF    + ++   + S   +K +T  +    ++CP        G I 
Sbjct: 1269 CALLWLRCRGCTTTFPFQGLSAT---APSASLAKLQTVSH--NGVQCPN----TNCGNIL 1319

Query: 1380 PGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-- 1436
            P + I  Q++     +++ YY G ++CDD  C   T  +++        G+ C   P+  
Sbjct: 1320 PNISIVAQLESSIRQYLASYYAGYLVCDDPQCGNRTRQMSV-------YGSRCLG-PKGL 1371

Query: 1437 ---CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA------KIPLEKELNKIRP 1487
               C G++  +  E D++ QL Y+  L D  R  ++  I A      KI +  E+N+ R 
Sbjct: 1372 AKDCLGKMHYELKERDVWNQLLYYQSLFDVDRVAKEDVIKAEGEGREKIKVLAEVNRER- 1430

Query: 1488 VVALAASTVQRIRERCAYGWVKLNDI 1513
                    V +  ER    WV+++ +
Sbjct: 1431 -FGTLKGVVDKWLERNGRQWVQMDSL 1455



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 21  ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
           +RA  L  L+ALR  G+    +  Y +  E  +YD V ED Y  +V R R +   FIVDD
Sbjct: 2   SRAAKLAELRALRAAGKTRLST--YEVAEEEQLYDEVDEDGYKKIV-RSRLDQDDFIVDD 58

Query: 81  DGLGYGDEGQEE------DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
           +G GY D+G+EE       +  A   S  +++     ++ K++R E + K+E   N
Sbjct: 59  NGEGYVDDGREEWDDGQGRYRYAATDSEEEEDRPAKGKAAKRKREEDKEKQEKINN 114


>gi|348682637|gb|EGZ22453.1| hypothetical protein PHYSODRAFT_496258 [Phytophthora sojae]
          Length = 1536

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1271 (34%), Positives = 653/1271 (51%), Gaps = 195/1271 (15%)

Query: 300  TAGWKEVSG--GNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
             A W  V+G   N+ +++        E E  V    S+  Y +DA E       G +YL 
Sbjct: 305  VAEWWNVAGDDSNVKMEDADEA----EPEAPVGAADSIQMYWMDAVEVRE--RPGKIYLI 358

Query: 358  GKVKAGS--------THHSCCVVVKNMQRCVYAIPNG-PLFQTDEIMKLEKDAEESRISP 408
            GK+K  S        T  SCCVVV N+QR +Y +P G PL   +E+ + E+         
Sbjct: 359  GKIKIPSPEGSKQPPTFRSCCVVVNNLQRYMYLVPKGTPL---NELSETEQ--------- 406

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNVSN------YIVSPVKRRYAFGQAEIPAGENYVL 462
                   Q+  + +  EI N L+   +++      +    V+R YAF +A IP G+N  L
Sbjct: 407  -------QEAWMQMHEEIHNVLIPSCITSRRDQEVFRTKLVERNYAFEEANIPRGKNLFL 459

Query: 463  KINYPFKDPPLPADL---KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            K+ YP + P  P+D     G+ F  + G  +  LE FL+ R++ GP W+ I     C   
Sbjct: 460  KVKYPARYPAPPSDFCSRGGKTFTRICGAFTRPLENFLLTRRLLGPGWVEIKNVRKCN-- 517

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
            + VS+CK E     PK++   +        PP+TV +++LK+V N     +E+V+ S + 
Sbjct: 518  EGVSFCKMEFETFDPKNVTPIAGG---MAPPPLTVMSLSLKSVCNPNTGKHEVVAISALT 574

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLD-GGIFPMGFNKEA---------TDRNSKA 629
                  +     ++  K    SHFTV+R LD    FP  +             T+  ++A
Sbjct: 575  ETGISAEGGGKGTKGVKHSQ-SHFTVIRPLDENNGFPQAYADAVQQDIRFGMKTENGTRA 633

Query: 630  -GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
              +  L  E +ER +L+  +  L   D DV+VGHN+  + L++L+ R    ++   +WSK
Sbjct: 634  INTERLRVEINERVMLSYFLNRLQLDDPDVIVGHNLHKYALELLISRIDNFKL-GGLWSK 692

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMS-CIAGRLLCDTFLCSRDLL-REVSYSLTQLA 746
            + RL+R  +  +       G G +   M   + GRL CDT++ S++LL  + +Y+L+ L 
Sbjct: 693  LTRLRRGRLNPMN-----VGEGWNEYRMDDMVNGRLFCDTYVSSKELLPSQNNYTLSYLV 747

Query: 747  KTQLNKDRKEVGPHDVLK-MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
            +  L++ R +V   ++ + +    E+ +  + +   DA   ++LM  L +LPL++QL N+
Sbjct: 748  ERLLHQQRLDVEMTEIPQILLGGPENFVRFLRHTLDDAMFVLQLMHKLEILPLSKQLANL 807

Query: 806  SGNLWGKTLQG-ARAQRVEYLLLHAF-RAK-KYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
             G LW +TL+   RA+R+EYLLLH F R+K K+IVP+KF    +T+    +SN       
Sbjct: 808  CGYLWTRTLEANKRAERIEYLLLHEFSRSKNKFIVPEKF----KTRTEADKSNK------ 857

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                   +R  +YAGG+V  PKKGLYD +++LLDF SLYPSII+
Sbjct: 858  -----------------------RREASYAGGMVFAPKKGLYDNFVVLLDFMSLYPSIIR 894

Query: 923  EYNICFTTVER---------------------------------------------SPDG 937
            EYNICFTTVER                                             S D 
Sbjct: 895  EYNICFTTVERQLNEDVPGAPSASKKKKKSKPMPQPENDEVVDDEDVDQNLDNADASADS 954

Query: 938  LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKT----ASGLKIQQLDIQQQALKLTAN 992
             +P LPSS +  G+LP ++K L++ R+ VK  +K      +  K   LDI+Q+A+KLTAN
Sbjct: 955  EIPALPSSASEPGILPAVIKRLLESRKQVKQQLKIEQKEGNVEKAIMLDIRQKAIKLTAN 1014

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGID 1052
            SMYGCLGF  SRFYAKP+A LIT  GR+ L+   ++ +     +VIYGDTDSIM+ S  +
Sbjct: 1015 SMYGCLGFRFSRFYAKPIAALITSTGRQTLQRAKEVAEQECGYDVIYGDTDSIMVDSRTE 1074

Query: 1053 DIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYEVIE 1111
             + +AK I  ++  + NK +K LE+++D ++KR+LLL KKKYAA+ ++ + +  P  V E
Sbjct: 1075 TLDEAKRIGREIQAQCNKHFKLLELEVDYIFKRILLLNKKKYAALVLKERPNSEPTFVKE 1134

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KGLDMVRRDW ++SK VG+  L  ILS  S +DVVESIH  L +V E MRSG+  + +Y
Sbjct: 1135 VKGLDMVRRDWCVISKAVGNEVLDFILSGNSRDDVVESIHEHLEQVAERMRSGKEPIAQY 1194

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK+L K PE YPD   Q HVQVAL L+  G   G  AG  +PY++C E+   SG    
Sbjct: 1195 VITKSLNKQPEQYPDRAKQYHVQVALALRALGKPVG--AGTHIPYVLCKEEEPGSG---- 1248

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
              +RA HPDE+ +  GK  ID+++Y   QIHP V+RLCA IEGTS  +LA CLGLD +KF
Sbjct: 1249 --RRAYHPDEVTRAGGKLNIDVEWYLESQIHPPVNRLCAHIEGTSSPQLAHCLGLDTAKF 1306

Query: 1292 QSKPSETMSSDPSSSLLFAV--GDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSE 1349
                +     +     + +V   D +R++ C PL ++C  C      P V        SE
Sbjct: 1307 SHSANHFGEENDGGDAIPSVLQNDADRFKDCVPLEITCDRCKMASAFPGV-----FGTSE 1361

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEV----------EAGRISPGMIANQVKRQADGFVSMYY 1399
            K S      +    L CP C  +             G     +++N++          YY
Sbjct: 1362 KDS------SLSSGLLCPVCKADFWGFDQEGIYGNVGDDLEAVLSNRLHIATREATKKYY 1415

Query: 1400 KGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCH 1459
            +   +C D TCK  T   +LR  G+   G +C +   C      +Y ++ LY QL YF  
Sbjct: 1416 EAWTICSDVTCKTRTQKQSLR--GN---GNIC-SAAGCRATTTLEYPDSALYTQLKYFES 1469

Query: 1460 LLDTQRGIEKM 1470
            L D +R  +K+
Sbjct: 1470 LFDVERAQKKI 1480


>gi|378733560|gb|EHY60019.1| DNA polymerase alpha subunit A [Exophiala dermatitidis NIH/UT8656]
          Length = 1455

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1225 (35%), Positives = 641/1225 (52%), Gaps = 146/1225 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G+L LFGKVK  ST  + S  V V N+ R ++ +P  
Sbjct: 331  VEEDGSLRFFWLDYTEV-----NGSLCLFGKVKHKSTGRYLSAFVKVDNVLRKLFFLPR- 384

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG-LKTEIANQLLNLNVSNYIVSPVKR 445
                              +      R+  ++V +  +  E+   +  + V+   V P  R
Sbjct: 385  ------------------KYRHCNGRETQEEVEMADVYNEVDALMSRMKVTTRKVKPCTR 426

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            +YAF   ++P    Y LK+ YP+ +  LP DL+GE F  + GT+++  E F++ + + GP
Sbjct: 427  KYAFELPDVPKEAEY-LKLLYPYDNAALPMDLQGETFSRVFGTNTALFEQFVLWKNIMGP 485

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL+I   +   A    SWCK E  V  P +I V   S  V E P +T+ ++  +T  N 
Sbjct: 486  CWLNIED-ADFTAVNNASWCKLECAVTRPANITVLKDSDKV-EAPRLTLMSLAFRTQLNV 543

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH--FTVVRKLDGGIFPMGFNKEAT 623
            +++  EI+ AS      A+I   +  ++   P  L    FTV+R   G  +P+GF  E  
Sbjct: 544  KENKQEILVAS------ARIYENVSLTDTTPPEKLPSRTFTVMRP-SGSSYPLGFEAETK 596

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
             +N          E SE+ LL++ +    K+D DVL+GH +   D  +LL R +  + P 
Sbjct: 597  KQNG-----TFMLEKSEQFLLSKFLALFEKVDPDVLMGHQLQEVDYSILLSRLKEKKTPG 651

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREV--- 738
              W +IGRLKR E PK       FG G S        +AGRL+CD    + D+ + +   
Sbjct: 652  --WHRIGRLKRGEWPK------TFGKGGSSFFAERQLLAGRLMCD---LANDMGKSLMTK 700

Query: 739  --SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
               +SLT++ +  L  D  R+++     LK + T  + L+  + +   D +    L+  L
Sbjct: 701  CQQWSLTEMCELYLGPDNPRRDLDNEAALKTWATTRDGLINYVNHCHADTFFIAALVLKL 760

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LT ++GN W +TL G RA+R EY+LLH F   KYI PDK       +  K R
Sbjct: 761  QMLPLTKVLTELAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDK-------EYGKGR 813

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
            + H  E+ + EE          DT   D         Y GGLV EP+KGLYDK+IL++DF
Sbjct: 814  AKHNEENEDGEEGA--------DTKKKDK--------YKGGLVFEPEKGLYDKFILVMDF 857

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            NSLYPSIIQEYNICFTTV+RS       +  VP +P  +T G+LP+L+  LV+RRR VK 
Sbjct: 858  NSLYPSIIQEYNICFTTVDRSTTSENENEEKVPEVPDEQTQGILPKLISTLVKRRREVKK 917

Query: 968  WMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             MK   A+   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L+T +GREILRST
Sbjct: 918  LMKDKRATAEDLALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLVTFKGREILRST 977

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
             +L ++N  L+VIYGDTDS+MI++  D+IA+A ++     + VN++YK LEID+D +++R
Sbjct: 978  KELAESN-QLQVIYGDTDSVMINTNADNIAQALSVGVDFKRSVNERYKLLEIDIDNIFRR 1036

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            +LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKE     L++ILS    E 
Sbjct: 1037 LLLHAKKKYAAINMAEVDGKYVEKLEVKGLDMKRREYCALSKEASQRLLNEILSGEDPEV 1096

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            V+E IH  L ++   MR   + ++KYVI   L K P+ YP+A + P VQVALR    G +
Sbjct: 1097 VLEKIHEYLRELAGKMRENAIPVQKYVIYTKLGKNPKEYPNADSMPQVQVALREIARGKT 1156

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                  D + Y++    G     S+   +R+  P ++ K D   + D++YY  +QI P +
Sbjct: 1157 V--RVNDVMSYVVT--MGDEQTKSLPAPKRSYTPQDVLKPDSGLVPDVEYYLYKQIFPPI 1212

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEP 1322
             RLCA I GT   RLA+CLGLD  K+Q   S   +S  +   + L   + D+ R+R    
Sbjct: 1213 ERLCAPIPGTDSVRLAECLGLDVRKYQINTSSGGASQQNNEITPLESQIPDDVRFRDAAR 1272

Query: 1323 LILSCPSCSSTFDCPAVCSS--ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L C +C  T     +C S  +C       S  E  + F                  S 
Sbjct: 1273 LRLLCRACKQTTVYEGLCDSTDLCTPDGIMCSNGECGHKF------------------SN 1314

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C
Sbjct: 1315 MAIVAQLESQIRVQTSAYYEGWLVCDDPSCGNRTRQMSVYGHRCLGPNGRAE------GC 1368

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK-------MEISAKIPLEKELNKIR--PV 1488
             GR+  +Y+E  LY QL YF  L D ++   K       +E   ++ +  E NK R  P+
Sbjct: 1369 LGRMSYEYSEKQLYNQLLYFAGLFDVEKAKNKARSEKEYVEKKDRVIVLAETNKERFEPL 1428

Query: 1489 VALAASTVQRIRERCAYGWVKLNDI 1513
             A+    ++    +C   WV+++ +
Sbjct: 1429 KAVVDGYLR----KCGRQWVEMDSL 1449



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 18/131 (13%)

Query: 25  ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
           A+ +L+A R  G+   ++  Y I+ +  IYD V ED Y  +V R R +   F+VDD+G G
Sbjct: 6   AIAQLRAQRLAGKTRLET--YQIEDQGAIYDEVDEDGYKKVV-RSRLDQDDFVVDDNGEG 62

Query: 85  YGDEGQEEDWSVAGLPSSSDDES---LDGQRSIKKQRIEKRGKKE----------NNQNV 131
           Y D+G+EE W       SSDD     L G  S K++R E R K E          NN  V
Sbjct: 63  YADDGREE-WQNERQYYSSDDAEDVPLKGNAS-KRKREETREKDERTNHKILNYFNNAPV 120

Query: 132 RKPNPSLTAAA 142
             P P +   A
Sbjct: 121 TAPKPKIQTTA 131


>gi|242787440|ref|XP_002481007.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218721154|gb|EED20573.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1464

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1248 (34%), Positives = 637/1248 (51%), Gaps = 137/1248 (10%)

Query: 301  AGWKEVSGGNMVLDEGKS---GLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            A W  V+    VL    +   G     ++  +++DGS+ F+ LD  E       GTL LF
Sbjct: 313  ATWDNVTSKLNVLSSPATENVGFGKVRAQDVIEEDGSVQFFWLDYTEV-----NGTLCLF 367

Query: 358  GKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKVK     T+ S  V V N+ R ++ +P     +   I   E D E+            
Sbjct: 368  GKVKNKKTGTYVSSFVKVDNILRKLFFLPREHRMKNGHITDEEVDMED------------ 415

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
                  +  E+   +  L V  + + P  R+YAF    IP   +Y LK+ YP+  P L  
Sbjct: 416  ------VYEEVDKMMTKLKVGMHKIKPCTRKYAFELPNIPKEGDY-LKLLYPYDKPVLSM 468

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK 535
            D  GE F  + GT+++  E F++ +++ GP WL I + +   A    SWCK+E  V  P 
Sbjct: 469  DTTGETFSHVFGTNTALFEQFVLWKRIMGPCWLKIGE-ADFSAAANASWCKFECQVSKPN 527

Query: 536  DIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWK 595
             I     S+   E+PP+T+ +++ +T+ N +++  EI+ AS        +  P      K
Sbjct: 528  TITTIPDSE--LEMPPLTLMSLSFRTLLNVKENKQEILVASARIYENVSL--PETTPPEK 583

Query: 596  KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
             P     FTV+R   G  +P+G   E      K    V   E +E+ LL++ +    ++D
Sbjct: 584  MP--CKTFTVMRP-SGTSYPIGLEAEV-----KKQRGVYMLEKNEQFLLSKFLALFERMD 635

Query: 656  SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPG 714
             D+++GH +   DL +LL+R +  + P   WS++GRLKR+E PK   +G   F       
Sbjct: 636  PDIIMGHQLQEVDLGILLNRMKEKKTPG--WSRVGRLKRTEWPKNFNRGGGFFAD----- 688

Query: 715  IMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQ 767
                IAGR++CD    + D+ + +     S++LT++ +  LN D  R E+     LK + 
Sbjct: 689  -RHLIAGRMMCD---LANDMGKSLMVKCQSWTLTEMCQLYLNDDHIRSELDNEAALKTWA 744

Query: 768  TL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            T  E LM+ + + E D +    L+  L +L LT+ LTN++GN W +TL G RA+R EY+L
Sbjct: 745  TTKEGLMKYVTHCEADTYFIAALVIRLQMLSLTKVLTNLAGNSWARTLTGTRAERNEYIL 804

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH F   KYI PDK++          R +   E++  ++  + D                
Sbjct: 805  LHEFHRNKYICPDKYS---------NRQHKATEEKMDDDDDSTDKKKKEKYK-------- 847

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG------LVP 940
                  GGLV EP+KGLYD+Y+L++DFNSLYPSIIQE+NICFTTV+RS          VP
Sbjct: 848  ------GGLVFEPEKGLYDRYVLVMDFNSLYPSIIQEFNICFTTVDRSSTAENENEEKVP 901

Query: 941  HLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGC 997
             +PSS +  G+LP L+ NLV RRR VK  MK   A+  ++   D +Q ALKLTANSMYGC
Sbjct: 902  EVPSSDQEQGILPRLIANLVTRRREVKKLMKDKRATTEQLALWDTKQMALKLTANSMYGC 961

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LG++ SRFYA+PLA L T +GREILRST DL ++   L VIYGDTDS+MI++ +D I+ A
Sbjct: 962  LGYTQSRFYARPLAMLTTFKGREILRSTKDLAESK-QLRVIYGDTDSVMINTNMDTISDA 1020

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
              +  +    VN++YK LEID+D +++R+LL  KKKYAA+ +   DG   + +E KGLDM
Sbjct: 1021 LKVGEEFKMSVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEVDGKYIDKLEVKGLDM 1080

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
             RR++  LSKEV    L +ILS    E V+  +H+ L  +   MR  ++ ++KYVI   L
Sbjct: 1081 KRREYCALSKEVSKRLLDEILSGEDSEVVLNKVHDYLRDIASQMREYKIPVQKYVIYTKL 1140

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            +K PE YP+ ++ P  QVALR    G +      D + Y++    G S  +S+   +R+ 
Sbjct: 1141 SKRPEEYPNKESMPPAQVALREIARGKT--IRPNDVIAYVVT--NGDSETASLPPPKRSY 1196

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE 1297
             P ++ K D +   DI+YY  +QI P + RLCA I GT P R+ADCLGLD  K+Q   S 
Sbjct: 1197 APQDVMKPDSELKPDIEYYLLKQIFPPIERLCAPIPGTDPVRIADCLGLDVRKYQINSSR 1256

Query: 1298 TMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSSICMSVSEKPSK 1353
            + +   +    L   + D  R+     L L C  C  SS F+  +  S++C         
Sbjct: 1257 SNAQQDAEIYPLESQIPDSVRFEHAARLTLRCRHCGASSVFEGLSSSSNMC--------- 1307

Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
                     +     CP E      S   I  QV+ Q     + YY+G ++CDD +C   
Sbjct: 1308 ---------SPHGVVCPNEACGKVFSTISIIAQVESQIRAQTAKYYEGWLVCDDSSCGNR 1358

Query: 1414 TCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR----- 1465
            T  +++   R +G   R         C GR+  +YTE  +Y QL YF  L D  +     
Sbjct: 1359 TRQMSVYGHRCLGPRGRAE------GCLGRMNYEYTEKQMYNQLLYFAGLWDVDKAKSIA 1412

Query: 1466 GIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
              E  E    I    E N+ +   A     V    ++C   WV ++ +
Sbjct: 1413 AKEAGEAKDNIHALAEYNRAK--FATIKGVVDGYLKKCGRQWVDMDTL 1458



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 9/129 (6%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           ++ARA+ L  LKALR  G++   +  Y ++ +  IYD V E+ Y  +V R+R +   F+V
Sbjct: 3   SAARAK-LAELKALRASGKKRLST--YEVEDQGSIYDEVDEEGYKKVV-RQRLDEDDFVV 58

Query: 79  DDDGLGYGDEGQEEDWSV--AGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
           DD+G GY D+G+E  W+    G   S DD  L  + ++ K++R E+  +KE  N  + K 
Sbjct: 59  DDNGEGYADDGREV-WNEDHIGYSDSEDDGDLPARGKAAKRKREEENQRKEKINNGISKY 117

Query: 135 NPSLTAAAA 143
             + +A AA
Sbjct: 118 FSTSSALAA 126


>gi|402079097|gb|EJT74362.1| DNA polymerase alpha catalytic subunit [Gaeumannomyces graminis var.
            tritici R3-111a-1]
          Length = 1527

 Score =  640 bits (1652), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 458/1333 (34%), Positives = 688/1333 (51%), Gaps = 153/1333 (11%)

Query: 240  DVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSA 299
            +VVEE  E   E  ++  +      +   +  K  +     E  ++ +K+  EKD  +SA
Sbjct: 279  EVVEEDDEDTMEVSHAGAIASSSVNLAASKPAKKALKPPAPEPSRVESKV--EKD--VSA 334

Query: 300  T-----AGWKEVSGGNMVLDEGKSGLNC--QESEFEVDDDGSLPFYILDAHEQLSGANMG 352
            T     + W +++ G  V+     G+     ++   V++DGSL  + LD  E      MG
Sbjct: 335  TEELDSSSWTQITQGLNVVSSLAEGVPAGKMDAADAVEEDGSLRMFWLDYAEV-----MG 389

Query: 353  TLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
            +L LFGKV  K    + SC V V N+ R +Y +P     +   + + E+  +ES      
Sbjct: 390  SLCLFGKVLNKKTKLYTSCFVKVDNILRKLYFLP-----RQFRVRQGEEHEDES------ 438

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
                +QDV      E+   +  + V  + +    R+YAF   ++P    Y LK  YP+  
Sbjct: 439  --VGMQDV----YGEVDGLMTKMGVDMHKIKACSRKYAFELPDVPREGQY-LKCLYPYTK 491

Query: 471  PPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYE 528
              L  D  GE +  + GT++S  E F++ + + GP WL I  + FS   A +  S C+ E
Sbjct: 492  RALDGDQAGETYSHVFGTNTSLFEQFVLWKNIMGPCWLKIEDANFS---AVRNASHCRLE 548

Query: 529  ITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTP 588
            +  + P  I   S ++   + PP+TV ++ L+T FN +++  E+++ S     +  +   
Sbjct: 549  VLAEHPAMISTLSEAE-APDPPPLTVMSMALRTKFNAKENKQEVLAISGRVYEQVSLAET 607

Query: 589  MLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLM 648
              A +         FTV+R  DG  FP+GF   A DR    G       + E  LL+  +
Sbjct: 608  APADKL----ACRTFTVIRPADGQAFPVGFEALAKDRRRPKGVAAKTARN-ELDLLSFFL 662

Query: 649  IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTI 706
             ++ K D DV+VGH + G D  VLL R Q  +V    WS++GRL+RS+ P    R G  +
Sbjct: 663  AQVDKADPDVVVGHQLEGADYSVLLSRLQDKKV--HQWSRLGRLRRSQWPASMGRTGGNV 720

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQL---NKDRKEVG 758
            F           +AGRLLCD    + D+ + V     S+ LT++    L    + R +V 
Sbjct: 721  FAE------RQVMAGRLLCD---LANDMGKSVMPKCQSWGLTEMCSLYLAGAGQRRLDVD 771

Query: 759  PHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
                L+ +  T + L++ + + E D +L   L     +LPLT+ LTN++GN W +TL G 
Sbjct: 772  SEVALRTWAATRDGLVDYLAHMEADTYLMAALALRTQILPLTKVLTNLAGNSWARTLTGT 831

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            RA+R EY+LLH F   KY+ PDK  +             G E R V+E   ++A      
Sbjct: 832  RAERNEYILLHEFHRSKYVCPDKPVF------------RGREARVVKEEDEDEAKAGGGK 879

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-- 935
              +          Y GGLV EP+KGLYDK++L++DFNSLYPSIIQE+NICFTTV+RS   
Sbjct: 880  KKD---------KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEFNICFTTVDRSSLT 930

Query: 936  ---DGLVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKL 989
               +  VP +PS+K   G+LP L+  LV RRR VK  MK  TA+  ++   D++QQALKL
Sbjct: 931  AKDEDEVPEVPSAKLEQGILPRLIATLVSRRRQVKALMKDKTATAEELATWDVKQQALKL 990

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLGF  SRFYA+PLA L T +GREILRST +L ++N  L+VIYGDTDS+MI++
Sbjct: 991  TANSMYGCLGFDKSRFYARPLAVLTTYKGREILRSTKELAESNA-LQVIYGDTDSVMINA 1049

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
             +D  A A+ +     + VN++Y+ LEID+D +++R+LL  KKKYAAV +   DG   E 
Sbjct: 1050 NVDSYAAARRVGIDFKRAVNERYRLLEIDIDNVFRRILLQAKKKYAAVNLIEVDGRLVEK 1109

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            +E KGLDM RR++  LSKEV    LS+ILS    E  V  IH  L  +   MR+  V  +
Sbjct: 1110 MEVKGLDMRRREYCALSKEVSAHILSEILSGDETEASVARIHEYLRDMAARMRAATVPPQ 1169

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            KYV+   L K P  YP+A + P VQVALR    G +     GD + YI+      ++GS 
Sbjct: 1170 KYVVYTQLGKAPREYPNADSMPQVQVALRDLAQGKTV--RKGDVISYIV------TTGSE 1221

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
              +A+RA  P ++ K D     D+D+Y ++QI P V RLCA+I GTS  +LA+ +GLDP 
Sbjct: 1222 -PVAKRAYTPTDVLKADSGLTPDVDWYMAKQIFPPVERLCANIVGTSTAQLAENMGLDPR 1280

Query: 1290 KFQSKPSETMSSDPSSS------LLFAVGDEERYRGCEPLILSCPSCS--STFDCPAVCS 1341
            ++ + PS    +   +       L   + DE R+  C  L L C +C   STF+      
Sbjct: 1281 RYAAGPSPAGQATGGADGLDIHPLESQLPDEVRFANCARLQLRCRACKLVSTFEGIGAAD 1340

Query: 1342 SICMSVSEKPSKPETEY--NFWRTLR-------CPKCPEEVEAGRISPGMIANQVKRQAD 1392
            +      +K  +PE++   N   T++       C  C       ++SP  +  QV+    
Sbjct: 1341 NEQKQQQDK-QQPESDMASNSSSTIKVTASGMACGLCD-----AKLSPISVVAQVEHAVR 1394

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVRKYTE 1447
               + YY+G ++CDD +C   TC +++        GT C   P+     C GR+  +++E
Sbjct: 1395 SATARYYEGWLVCDDTSCGARTCQVSV-------YGTRCLG-PKGLALDCQGRMRYEFSE 1446

Query: 1448 ADLYKQLTYFCHLLDTQRGIEKMEISA-------KIPLEKELNKIRPVVALAASTVQRIR 1500
             D+Y QL Y   L D  R   + + ++        + +  ELN+ R   A   + V R  
Sbjct: 1447 RDIYNQLVYLASLFDVDRARARADAASASEPTRENLRVLAELNRAR--FATVKAVVDRYL 1504

Query: 1501 ERCAYGWVKLNDI 1513
            ++C   WV ++ +
Sbjct: 1505 DKCGRQWVAMDTL 1517



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 17/123 (13%)

Query: 17  AEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGF 76
           ++ S++      L+ALR+ G+++ D+  Y ++  + +Y+ V ED Y  LV R R     F
Sbjct: 4   SKGSSKRTKFAELRALRQSGKKTFDA--YEVEKVDSLYEEVDEDSYKKLV-RERLNQDDF 60

Query: 77  IVDDDGLGYGDEGQEEDWSVAGLPSSSDDES------LDGQRSI-----KKQRIEKRGKK 125
           +VDD+G GY D+G+ EDW    +P   D ES        G+ ++     K+ R E R K+
Sbjct: 61  VVDDNGEGYADDGR-EDWD--RVPVYDDSESDGAAPRKTGKSAVAAVAGKRARDEDRAKR 117

Query: 126 ENN 128
           + N
Sbjct: 118 DAN 120


>gi|19115098|ref|NP_594186.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces pombe
            972h-]
 gi|118833|sp|P28040.1|DPOA_SCHPO RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
            Full=DNA polymerase I
 gi|5009|emb|CAA41232.1| DNA polymerase catalytic subunit alpha [Schizosaccharomyces pombe]
 gi|2662027|emb|CAB16598.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces pombe]
 gi|227842|prf||1712310A DNA polymerase
          Length = 1405

 Score =  640 bits (1652), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1227 (35%), Positives = 640/1227 (52%), Gaps = 147/1227 (11%)

Query: 278  DVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPF 337
            DV    ++N+KI     P  S ++   +VS  ++                  ++DGSL F
Sbjct: 290  DVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVT-----------------EEDGSLFF 332

Query: 338  YILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            + +D  E       G+L LFGKV  KA   + SC + V  + R +Y +P           
Sbjct: 333  FWMDYTEMY-----GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPR---------- 377

Query: 396  KLEKDAEESRISPMAFRKKLQDVALGLKT---EIANQLLNLNVSNYIVSPVKRRYAFGQA 452
                        P +       +A   K    E+AN L    V  +     K +YAF   
Sbjct: 378  ------------PSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELE 425

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
            ++P   +Y L++ Y +  P LP DL G +F  + GT+++  E F++ R+V GP WL I +
Sbjct: 426  DVPRTADY-LEVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKIQQ 484

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHV-AEVPPVTVTAINLKTVFNKRQDVNE 571
              +  A +  SWC+ EI   SP++I VS     + ++ PP+TV ++  +T+ NK Q+  E
Sbjct: 485  -PNFDAVKNASWCRVEIGCSSPQNISVSFEKNEITSKTPPMTVMSLAFRTLINKEQNKQE 543

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSH-FTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            +V  S        I+  + A++     M S+ F+++R L   IFP GF K A    S   
Sbjct: 544  VVMISARIFENVDIEKGLPAND-----MPSYSFSLIRPLKQ-IFPNGFEKLARQHKSS-- 595

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL--DVLLHRAQVCRVPSSMWSK 688
               + CE SE +LLN  + ++   D DV  GH+   F++   VLL R +  ++ +  WS 
Sbjct: 596  ---IFCERSEVSLLNNFLNKVRTYDPDVYFGHD---FEMCYSVLLSRLKERKIHN--WSS 647

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQLAK 747
            IGRL+RSE P     R+   S         IAGRL+CD +    R +++  S+SL+++  
Sbjct: 648  IGRLRRSEWP-----RSFNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVL 702

Query: 748  TQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             +L+  R+++     L+ +  T   L++ + + E D +    + F + +L L++ LTNI+
Sbjct: 703  KELDIKRQDINQEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIA 762

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN W +TL G RA+R EY+LLH F+   YIVPDK     +  + +     G ED   EE 
Sbjct: 763  GNSWARTLTGTRAERNEYILLHEFKKNGYIVPDK-----QQSIRRHAEAFGAEDGLQEES 817

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
              +  +                  Y GGLV EP+KGLY+  IL++DFNSLYPSIIQEYNI
Sbjct: 818  LGKKKD-----------------KYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNI 860

Query: 927  CFTTVERSP-----DGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL 980
            CFTTV+RSP     D  +P  PS S   G+ P L+ NLV+RRR +K  +K  S    Q+L
Sbjct: 861  CFTTVDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRL 920

Query: 981  --DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
              DIQQQALKLTANSMYGCLG++ SRFYA+PLA LIT +GRE L +T +L  + + L+VI
Sbjct: 921  QWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELA-DQMGLQVI 979

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDS+M+++ + D   A  I  +  ++VN++Y  LEID+D +Y+RMLL  KKKYAA++
Sbjct: 980  YGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQ 1039

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +    G P   ++ KGLDM RR++  L+KE   FCL QILS    E V+E+IH+ LM   
Sbjct: 1040 LD-SQGKPN--LDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFS 1096

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E MR+G+    K++I   L K PE YP+ K  P VQVAL+ K  G       GD +P+II
Sbjct: 1097 EKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALKKKARG--ENVRVGDVIPFII 1154

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
                   S +    A RA  P E+   +   +ID +YY S QI P + R+ A IEGT+  
Sbjct: 1155 A-----GSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRA 1209

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPA 1338
            RLA+CLGLD  K+ S   ET  S         + D++ +    PL+L CPSC++T     
Sbjct: 1210 RLAECLGLDARKYYSH--ETSESSAFQRYESTLTDDQCFINVSPLLLKCPSCNAT----- 1262

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
                   S S +  K   E  +  T+ C  C  E      S   I  Q   Q   F+++Y
Sbjct: 1263 -------SFSLRSVKSLKETLYANTVEC-DCGYEY-----SDFTIILQFSSQLRDFINLY 1309

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y+G+++CDD +C   T  +++        G  C N   C G +  +Y +  LY Q+ +  
Sbjct: 1310 YEGILVCDDSSCGNRTRQMSV-------YGKRCCN-KSCRGSVHFEYNDEQLYNQIKFLL 1361

Query: 1459 HLLDTQRGIEKMEISAKIPLEKELNKI 1485
              + T  G  +  I     + K +++I
Sbjct: 1362 KAVQTTTGATRNGIIRCNAINKNISRI 1388



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 9/121 (7%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
           R+R+ G + S R      L+ALR+ G+    +  Y  K    +YD V+E+EY  +V R+R
Sbjct: 2   RKRNAGIKPSQR---FAELRALRQAGKTRAST--YESKENEELYDNVSEEEYRKIV-RQR 55

Query: 71  EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
            +   F+VDD+G GY D G +E W  +   S  DDE+  G  S +K++  K    E NQ 
Sbjct: 56  LDEDDFVVDDNGAGYVDNGYDE-WDQSHY-SDEDDENEKGS-SGRKRKKSKNVLAEPNQQ 112

Query: 131 V 131
           +
Sbjct: 113 I 113


>gi|367026708|ref|XP_003662638.1| hypothetical protein MYCTH_2061829 [Myceliophthora thermophila ATCC
            42464]
 gi|347009907|gb|AEO57393.1| hypothetical protein MYCTH_2061829 [Myceliophthora thermophila ATCC
            42464]
          Length = 1483

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 435/1235 (35%), Positives = 639/1235 (51%), Gaps = 156/1235 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN- 385
            +++DGSL  Y  D  E       G+L LFGKV  K    + SC V V N+ R +Y +P  
Sbjct: 346  IEEDGSLNMYWTDYTEL-----NGSLCLFGKVLNKKTGRYVSCFVKVDNILRKLYFLPRK 400

Query: 386  ----GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
                G +  T+++                   ++ DV      E+   +  +NV  + + 
Sbjct: 401  HRVRGGVETTEQV-------------------EMMDVY----QEVDAIMTKMNVQMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
               R+YAF   +IPA   Y LK+ YP+  PPL    KGE F  + GT++S  E F++ +K
Sbjct: 438  ACTRKYAFELPDIPAEAQY-LKLLYPYTKPPLELGTKGETFSHVFGTNTSLFEQFVLWKK 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A +  S C+ E+ V+ P  I     S+   + PP+T+ +I L+T
Sbjct: 497  IMGPCWLRIED-ADFGALRNASHCRLEVLVEHPNMIAPIGESES-EDAPPLTLMSIALRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            +FN +++  EI++ S        +     A   K P     FT+VR   G  FP+GF K 
Sbjct: 555  MFNAKENKQEILAISARIYEDVSLTDTTPAD--KLP--CRTFTIVRP-QGNAFPLGFEKM 609

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
            A +R       ++     E  +L+  + ++  +D DV++GH   G D  +LL+R  +   
Sbjct: 610  ARERRK----GLIKLMKQESDILSFFLAQVDLVDPDVILGHQFEGVDYSILLNR--LYEK 663

Query: 682  PSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV- 738
             +  WS++GRL+RS  P    + G  +F           +AGRLLCD    + D  + V 
Sbjct: 664  KTHQWSRLGRLRRSAWPSSIGKVGGNVFAE------RKVMAGRLLCD---LANDAGKSVM 714

Query: 739  ----SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMF 791
                S+SLT++    L+ D  R++V     LK   T  E LM+ + + ETD +    L  
Sbjct: 715  FKCQSWSLTEMCSLYLSGDNRRQDVDNEHALKTLATSKEGLMDYLTHAETDTYFIAALAL 774

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
               +LPLT+ LTN++GN W +TL G RA+R EY+LLH F  +KYI PDK           
Sbjct: 775  RTQILPLTKILTNLAGNSWARTLTGTRAERNEYILLHEFHNQKYICPDK----------- 823

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
                         +       FD +    D  +G++   Y GGLV EP+KGLYDK++L++
Sbjct: 824  -------------QPLRGRGRFDEENQEEDGGEGQKKDKYKGGLVFEPEKGLYDKFVLVM 870

Query: 912  DFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            DFNSLYPSIIQEYNICFTTV+R+     +  VP +P+ K   +LP+L++ LV+RR++VK 
Sbjct: 871  DFNSLYPSIIQEYNICFTTVDRTSVSGDEEGVPPVPTVKEEAILPKLIRRLVERRKVVKG 930

Query: 968  WMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             MK+  A+   I   DI+Q ALKLTANSMYGCLGF+ SRFYA+PLA L T +GREILRST
Sbjct: 931  LMKSPNATPENIATWDIKQLALKLTANSMYGCLGFTKSRFYARPLAVLTTFKGREILRST 990

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
             +L ++ LNL+VIYGDTDS+MI++ +D++  A  +  +   +VNK+Y+ LEID+D +++R
Sbjct: 991  KELAES-LNLQVIYGDTDSVMINANVDNMRDALKVGSEFKNQVNKRYQRLEIDIDNIFRR 1049

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            +LL  KKKYAA+ +   +G   + +E KGLDM RR++  LS+EV    L +ILS    E 
Sbjct: 1050 ILLQAKKKYAAINMVEVNGKYIDKMEVKGLDMKRREYCPLSREVSTRILDEILSGEDTEV 1109

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
             V+ IH  L ++   MR   +   KY+I   L K P+ YP+A N P VQVALR    G +
Sbjct: 1110 SVQRIHAYLREISGKMREQAIPPAKYIILTQLGKAPKEYPNADNMPQVQVALRELARGKT 1169

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                 GD V YII    G S  +S   A+RA  P ++ K D     D+++Y  +QI P V
Sbjct: 1170 --LRKGDVVSYIIT---GDSKTTSEPAAKRAYTPQDVLKPDSGLTPDVEWYLGKQIFPPV 1224

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSS------LLFAVGDEERYRG 1319
             RLCA+I GTS  +LAD LGLD  ++ +  + + SS           L   + D  R+R 
Sbjct: 1225 ERLCANIVGTSTAQLADNLGLDVRRYVNNGASSSSSSGGKHDHEIHPLESQIPDAVRFRD 1284

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            C  L L C SC ++     +  S   +    PS           + CP C        I 
Sbjct: 1285 CARLTLRCRSCKASAPFEGLVGS---ADRVTPS----------GVSCPSCKA------IL 1325

Query: 1380 PGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYP 1435
            P + I  QV+       + YY+G ++CDD +C   T  +++   R +G    G       
Sbjct: 1326 PTLSIVAQVESAVRAQTARYYEGWLVCDDSSCGNRTRQMSVYGSRCLGPKGLGR------ 1379

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRP-------V 1488
             C GR+  + +E D+Y QL YF  L D  R ++++  SA         +  P       V
Sbjct: 1380 GCTGRMRYEMSERDMYNQLLYFASLWDVDRALKRVSASADGGGGGGGGEALPPGELRDNV 1439

Query: 1489 VALA----------ASTVQRIRERCAYGWVKLNDI 1513
            VALA             V++  E+C   WV ++ +
Sbjct: 1440 VALADHNRTRFSTVKGVVEKYLEKCGRQWVAMDTL 1474



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 6/112 (5%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           +++ +     +ALR+ G++  D+  Y ++    +Y+ V ED+Y  +V R R     F+VD
Sbjct: 4   ASKRDKFAEFRALRQAGKKKFDT--YEVEDAPTLYEEVDEDQYKKIV-RARLNEDDFVVD 60

Query: 80  DDGLGYGDEGQEEDWSVAGLPSSSDDESL---DGQRSIKKQRIEKRGKKENN 128
           D+G GY D+G+EE   V     S  D+++      R  KKQR +++ K++ N
Sbjct: 61  DNGEGYADDGREEWDRVQTYYDSESDDAVPVRGKDRKSKKQRDDEQAKRDAN 112


>gi|6018683|emb|CAB57881.1| DNA-directed DNA polymerase [Schizosaccharomyces pombe]
          Length = 1405

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1227 (35%), Positives = 640/1227 (52%), Gaps = 147/1227 (11%)

Query: 278  DVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPF 337
            DV    ++N+KI     P  S ++   +VS  ++                  ++DGSL F
Sbjct: 290  DVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVT-----------------EEDGSLFF 332

Query: 338  YILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
            + +D  E       G+L LFGKV  KA   + SC + V  + R +Y +P           
Sbjct: 333  FWMDYTEMY-----GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPR---------- 377

Query: 396  KLEKDAEESRISPMAFRKKLQDVALGLKT---EIANQLLNLNVSNYIVSPVKRRYAFGQA 452
                        P +       +A   K    E+AN L    V  +     K +YAF   
Sbjct: 378  ------------PSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELE 425

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
            ++P   +Y L++ Y +  P LP DL G +F  + GT+++  E F++ R+V GP WL I +
Sbjct: 426  DVPRTADY-LEVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKIQQ 484

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHV-AEVPPVTVTAINLKTVFNKRQDVNE 571
              +  A +  SWC+ EI   SP++I VS     + ++ PP+TV ++  +T+ NK Q+  E
Sbjct: 485  -PNFDAVKNASWCRVEIGCSSPQNISVSFEKNEITSKTPPMTVMSLAFRTLINKEQNKQE 543

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSH-FTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            +V  S        I+  + A++     M S+ F+++R L   IFP GF K A    S   
Sbjct: 544  VVMISARIFENVDIEKGLPAND-----MPSYSFSLIRPLKQ-IFPNGFEKLARQHKSS-- 595

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL--DVLLHRAQVCRVPSSMWSK 688
               + CE SE +LLN  + ++   D DV  GH+   F++   VLL R +  ++ +  WS 
Sbjct: 596  ---IFCERSEVSLLNNFLNKVRTYDPDVYFGHD---FEMCYSVLLSRLKERKIHN--WSS 647

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQLAK 747
            IGRL+RSE P     R+   S         IAGRL+CD +    R +++  S+SL+++  
Sbjct: 648  IGRLRRSEWP-----RSFNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVL 702

Query: 748  TQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             +L+  R+++     L+ +  T   L++ + + E D +    + F + +L L++ LTNI+
Sbjct: 703  KELDIKRQDINQEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIA 762

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN W +TL G RA+R EY+LLH F+   YIVPDK     +  + +     G ED   EE 
Sbjct: 763  GNSWARTLTGTRAERNEYILLHEFKKNGYIVPDK-----QQSIRRHAEAFGAEDGLQEES 817

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
              +  +                  Y GGLV EP+KGLY+  IL++DFNSLYPSIIQEYNI
Sbjct: 818  LGKKKD-----------------KYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNI 860

Query: 927  CFTTVERSP-----DGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL 980
            CFTTV+RSP     D  +P  PS S   G+ P L+ NLV+RRR +K  +K  S    Q+L
Sbjct: 861  CFTTVDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRL 920

Query: 981  --DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
              DIQQQALKLTANSMYGCLG++ SRFYA+PLA LIT +GRE L +T +L  + + L+VI
Sbjct: 921  QWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELA-DQMGLQVI 979

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDS+M+++ + D   A  I  +  ++VN++Y  LEID+D +Y+RMLL  KKKYAA++
Sbjct: 980  YGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQ 1039

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            +    G P   ++ KGLDM RR++  L+KE   FCL QILS    E V+E+IH+ LM   
Sbjct: 1040 LD-SQGKPN--LDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFS 1096

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E MR+G+    K++I   L K PE YP+ K  P VQVAL+ K  G       GD +P+II
Sbjct: 1097 EKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALKKKARG--ENVRVGDVIPFII 1154

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
                   S +    A RA  P E+   +   +ID +YY S QI P + R+ A IEGT+  
Sbjct: 1155 A-----GSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRA 1209

Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPA 1338
            RLA+CLGLD  K+ S   ET  S         + D++ +    PL+L CPSC++T     
Sbjct: 1210 RLAECLGLDARKYYSH--ETSESSAFQRYESTLTDDQCFINVSPLLLKCPSCNAT----- 1262

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
                   S S +  K   E  +  T+ C  C  E      S   I  Q   Q   F+++Y
Sbjct: 1263 -------SFSLRSVKSLKETLYANTVEC-DCGYEY-----SDFTIILQFSSQLRDFINLY 1309

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y+G+++CDD +C   T  +++        G  C N   C G +  +Y +  LY Q+ +  
Sbjct: 1310 YEGILVCDDSSCGNRTRQMSV-------YGKRCCN-KSCRGSVHFEYNDEQLYNQIKFLL 1361

Query: 1459 HLLDTQRGIEKMEISAKIPLEKELNKI 1485
              + T  G  +  I     + K +++I
Sbjct: 1362 KAVQTTTGATRNGIIRCNAINKNISRI 1388



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 9/121 (7%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
           R+R+ G + S R      L+ALR+ G+    +  Y  K    +YD V+E+EY  +V R+R
Sbjct: 2   RKRNAGIKPSQR---FAELRALRQAGKTRAST--YESKENEELYDNVSEEEYRKIV-RQR 55

Query: 71  EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
            +   F+VDD+G GY D G +E W  +   S  DDE+  G    K++R  K    E NQ 
Sbjct: 56  LDEDDFVVDDNGAGYVDNGYDE-WDQSHY-SDEDDENEKGSSGRKRKR-SKNVLAEPNQQ 112

Query: 131 V 131
           +
Sbjct: 113 I 113


>gi|358340495|dbj|GAA34876.2| DNA polymerase alpha subunit A [Clonorchis sinensis]
          Length = 3307

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 459/1317 (34%), Positives = 657/1317 (49%), Gaps = 260/1317 (19%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH---SCCVVVKNMQRCVYAIPNGP 387
            DDG L FY  DA+E  S    G +YLFGK+K         SCC+ VK+++R ++ +P   
Sbjct: 368  DDG-LHFYWFDAYED-SRHQPGVVYLFGKIKDSQRPGKFISCCLRVKDLERRIFLLPRPE 425

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
            L           D  ES     +F K++        TE         V  +      +RY
Sbjct: 426  L----------TDGAES----GSFMKEVY-------TEFRQVSAEHKVGRFRCKLSTKRY 464

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF  A++P    Y L++ Y    P LPADL+G+ F  + GT++S LE  +++ +++GP W
Sbjct: 465  AFDLADVPVESEY-LEVRYSASCPALPADLQGKTFSHIFGTNTSFLENLILELQLRGPCW 523

Query: 508  LSISKFSSCPAPQRVSWCK--YEITVDSPKDIRV--------------SSSSKHVAEVPP 551
            L + K ++   PQ +SWC+  +E++  S  +  V               +S+  V   PP
Sbjct: 524  LVV-KNAALVQPQ-ISWCQTDFEVSWQSGVNCPVVKLSALLERQQAEGHASAATVPPAPP 581

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            + + A+N+K+V   + + +EIVS  ++      +D P+  S ++     SH+ V+     
Sbjct: 582  LCLVAVNVKSVTQPQANHSEIVSIGLLINRAYSLDRPVGKSLFQ-----SHYLVMAPPKD 636

Query: 612  GIFPMGF--------------------NKEATDRNSKAGSNVLC-----CESSERALLNR 646
               P                       N+E T +N  + S+V+       E +ERALL R
Sbjct: 637  AALPYDLRTKLPTWGKQYAPPPNSWMSNQEETPQNPGSSSSVIGSGGVDIEPNERALLGR 696

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
             +  ++KLD D+LVGH++ G  +++L+ R    +VP   W +IGRL+RS         ++
Sbjct: 697  FLTRIHKLDPDILVGHDLWGHQIELLVQRLNANKVP--HWHRIGRLRRSVQ------YSV 748

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL-----NKDRKEVGPH- 760
              +  S  I + + GRL+CDT + +R+L+R  +Y+L+ LA   L     +  R++V P+ 
Sbjct: 749  SVNTRSWLIRNSMPGRLVCDTRVSARELVRSRTYNLSDLANQVLADVGTSGCRRQVPPYL 808

Query: 761  -----------------------------DVLKMFQTLESLMELIEYGETDAWLSMELMF 791
                                         D+  +F T + + +LI++  +DA L++ L  
Sbjct: 809  LKLLNGGSSADDTLGSIGVELADLEIDSADLRCLFATSDLVKQLIDFCLSDAHLALRLAH 868

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L VLPL  Q+T I GN+  +TL G RA+R E LLLHAF    YIVPD  T  +     +
Sbjct: 869  QLQVLPLAMQITCICGNVLSRTLSGGRAERNEALLLHAFTQHGYIVPDPPTNAR-----R 923

Query: 852  QRSNH--GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
             R  H  G +D +V E          D +      GKR PAY GGLVLEPKKG YDKYIL
Sbjct: 924  GRGTHAAGQDDWDVVE--------HGDETQPAALTGKRKPAYTGGLVLEPKKGFYDKYIL 975

Query: 910  LLDFNSLYPSIIQEYNICFTTVER------------SPDGLVPH---------------- 941
            LLDFNSLYPSIIQE+NICFTTV R            S D   PH                
Sbjct: 976  LLDFNSLYPSIIQEFNICFTTVNRELVTGSDSNPTDSTDVEAPHSETADLDVMVASLLAT 1035

Query: 942  --------------------LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG------L 975
                                LP+++T G+LP  ++ LV  RR VK  +  AS        
Sbjct: 1036 VQGTAGGSTTVTDPRSHQLRLPTAQTPGLLPAEIRRLVDSRREVKKLIAVASNSSNPDQA 1095

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            ++ Q + +Q ALKLTANS+YGCLGF+ SRF A+ LA L+T  GR +L +T DLV+N +N 
Sbjct: 1096 QLAQWNTRQAALKLTANSVYGCLGFAASRFCARGLAALVTGLGRAVLMNTRDLVEN-MNF 1154

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            EVIYGDTDSIM+++   D+  A +I  KV  EVNK Y+ LE+D DG+Y  MLLL KKKYA
Sbjct: 1155 EVIYGDTDSIMVNTNSTDLLTALSIGEKVRHEVNKHYRLLELDTDGVYAAMLLLAKKKYA 1214

Query: 1096 AVKVQ---------------FKDGMPYEVI--ERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            A+ +Q                +  +P      E KGLD+VRRDWS ++  VG  C++ +L
Sbjct: 1215 ALAIQNPIQWAAAFKAAQAKHQPALPPPKTKQEMKGLDIVRRDWSAIAVSVGRRCVAALL 1274

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            S    + ++E IH  L++  E +R G++ L  ++ITK LTK PE Y DAK+QPHVQVALR
Sbjct: 1275 SGEPKDTILERIHTDLIETAEKVREGKMPLSDFIITKMLTKAPEDYADAKSQPHVQVALR 1334

Query: 1199 L------KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL------KKGD 1246
            L      K  G      AGDTV YIIC     + GS     QR   P EL      K  D
Sbjct: 1335 LNNSDGSKDGGARRRLRAGDTVEYIIC-----NDGSGSVATQRGYSPGELTNRGMSKSAD 1389

Query: 1247 GK---WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDP 1303
             +     +D++YY + QIHPVVSRL A IEGTSP R+ADCLGLDPS ++ +  +    D 
Sbjct: 1390 DQQPSLTVDVNYYLAHQIHPVVSRLVAPIEGTSPARIADCLGLDPSGYRRQGVDVAGGDE 1449

Query: 1304 SSSLLFAVGDEER-----YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
              ++   VG         +   EPL L CP           C    + +     KP +  
Sbjct: 1450 DENIDCTVGSGANAGVTAWGDVEPLYLPCPQ---------TCGGPQLEI-----KPSSLT 1495

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
               +   CP C   +     S   I NQ+  QA   +  Y  G + C+D  C   T S++
Sbjct: 1496 ALSKAWVCPNCSHNLLQSVDSVCSIVNQLTWQARQMIVCYELGWLHCEDPACGLVTRSIH 1555

Query: 1419 -----LRLIGDAE----RG--TVCPNYPRCNGRLVRK--YTEADLYKQLTYFCHLLD 1462
                 + + GD++    RG   +CP    C G+ + K  Y E+ LY+QL +F HL++
Sbjct: 1556 CPPSTVGVHGDSDGLWARGGRPLCPG---CGGQALLKPHYAESRLYRQLCFFRHLVN 1609



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 133/309 (43%), Gaps = 41/309 (13%)

Query: 45  YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
           Y  K E  +Y TV E EY  LV +R E+   +IVDDDGLGY D+G+E          + +
Sbjct: 30  YCEKEEESVYVTVDESEYAKLVQQRLED--DWIVDDDGLGYADDGREI------FDDNDE 81

Query: 105 DESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAA-----MMGKQRLSAMLTSTAM 159
           DE++D     + +R ++  K +++    + NP + A  +     ++G+   S    S+A 
Sbjct: 82  DEAVDD----RGRRTKRSSKTQSHSKKTRLNPDIRATESAPLRPVVGRDIRSLFAASSAQ 137

Query: 160 FKKSKDEKVKESESV---IDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLV 216
              +K  K     ++   +D++LAE   +  D    RR ++ ++      + VK+   + 
Sbjct: 138 NSSTKKRKEPMEATIDPNLDDLLAELECN--DSVPGRRDIAPSLSRPTKPHKVKSRRTVP 195

Query: 217 TNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVN 276
           +    S +E  D I    +++N DV++        S     + K      V E  + +  
Sbjct: 196 SQPFQSSEE--DQIAE--ELENSDVID------LRSHREPMIKKHSTRTPVVEAKQKKPI 245

Query: 277 EDVKECKK--LNAKISTEKDPLLSATAGWKEVSGGN-------MVLDEGKSGLNCQESEF 327
            DV    K  +    STEK P   A     E    N        V+ E +  +   E +F
Sbjct: 246 PDVGHLPKPRVTNPFSTEKQPRPRAAPAATETVADNTASPEPDTVMAEMEVSVADFEDDF 305

Query: 328 EVDDDGSLP 336
           +V D+ S P
Sbjct: 306 DVPDESSKP 314


>gi|396491082|ref|XP_003843485.1| similar to DNA polymerase alpha catalytic subunit [Leptosphaeria
            maculans JN3]
 gi|312220064|emb|CBY00006.1| similar to DNA polymerase alpha catalytic subunit [Leptosphaeria
            maculans JN3]
          Length = 1461

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 450/1249 (36%), Positives = 648/1249 (51%), Gaps = 136/1249 (10%)

Query: 301  AGWKEVSGGNMVLDE---GKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            + W EV+    V+       +G+     E  +++DGSL  + +D  E       G+L LF
Sbjct: 306  SSWNEVTSKLNVMSSPAPQTTGVGKMRPEDALEEDGSLHMFWIDYTEI-----NGSLCLF 360

Query: 358  GKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKVK   T  + SC + + N+ R +Y +P     +  ++  +  D EE R+S        
Sbjct: 361  GKVKDRQTGNYASCFLKIDNILRKLYFLPR----EYRQVRGVTTD-EEVRLS-------- 407

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
             DV+     E+ + +    V  + + P  R+YAF   +IP   +Y LK+ Y +   PL A
Sbjct: 408  -DVS----DEVDSIMSRHRVGMHKIKPCTRKYAFELPDIPKEADY-LKLLYGYDKMPLSA 461

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK 535
            DL GE F  + GT++S  E F++ + V GP WL I       A    SWCK E  V  P 
Sbjct: 462  DLSGETFSHVFGTNTSLFEQFVLWKNVMGPCWLKIDN-PDLGAIHNASWCKLEAQVAKPN 520

Query: 536  DIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID--TPMLASE 593
             I V S+S ++ + PP+T+ +++L+T FN + +  EI+ AS +   K  +   TP+   E
Sbjct: 521  SISVLSNSDNL-DAPPMTLMSLSLRTTFNAKDNKQEILMASAMIYDKFSLTDTTPIEDME 579

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
             K       FTV+R  +G  FP GF  E      K   N    + +E+ LL+ LM    +
Sbjct: 580  CKS------FTVMRP-NGVAFPTGFQAEV----EKVKGN-FTLKKTEQELLSWLMAMFQR 627

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
             D DVLVGH +   D  VLL R +  + P   W +IGRLKRS+ PK   G+   G G+  
Sbjct: 628  YDPDVLVGHRLDDVDYSVLLSRLREKKTPG--WHRIGRLKRSDWPK-SMGK---GGGSFF 681

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
                  +GRLLCD    + DL + +     S+SL ++ +  LNK R+E+     L  +  
Sbjct: 682  AEKQLASGRLLCD---LANDLGKSLMTKCQSWSLEEMCQLVLNKKREELDNEAALNSWAA 738

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
            T E L+  +++ + DA+    +   + +LPLT+ LTN++GN W +TL G RA+R EY+LL
Sbjct: 739  TKEGLLNYVKHCQADAYFIAAISMKVQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILL 798

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
            H F   KYI PDK                G     +EE               D  +G+ 
Sbjct: 799  HEFHKNKYICPDK--------------QWGKSKVKIEE---------------DAVEGEE 829

Query: 888  GPAYAGG------LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DG 937
            G            LV EP+KGLYDK+IL++DFNSLYPSIIQE+NICFTTVER+     D 
Sbjct: 830  GADAKKKDKFKGGLVFEPEKGLYDKFILVMDFNSLYPSIIQEFNICFTTVERADLSEDDD 889

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMY 995
             VP +P+++  G+LP L+  LV RRR VK  MK   A+  ++   DI+Q ALKLTANSMY
Sbjct: 890  KVPEVPATQEQGILPRLIATLVSRRREVKKLMKAKDATPDQLATWDIKQLALKLTANSMY 949

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLG++ SRFYA+PLA L T +GREILR T D+ +    L VIYGDTDS+MI++ +D+I 
Sbjct: 950  GCLGYTKSRFYARPLAMLTTYKGREILRKTKDMAEEKA-LRVIYGDTDSVMINTNVDNIQ 1008

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGL 1115
             A  +  +  +EVN  Y+ LEID+D +++R+LL  KKKYAA+ +   DG   E +E KGL
Sbjct: 1009 DALKLGNEFKKEVNDSYRLLEIDIDNVFRRILLHAKKKYAAINMIPVDGKYVEKLEVKGL 1068

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            DM RR++  LSKE     L+ +LS    E VVE IHN L ++ + MR   +   KY I  
Sbjct: 1069 DMRRREYCALSKETSTELLNFLLSGEDPETVVEKIHNHLRELSKRMREYAIPTRKYTIYT 1128

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             L K P+ YP+  + P VQVALRL   G      A D + +II    G SSGS+   A+ 
Sbjct: 1129 QLGKNPKEYPNGNSMPSVQVALRLMAKG--KHVKAKDVMSFIIT---GESSGSAENAAKN 1183

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ-SK 1294
            A   DE+ K D     DIDYY  +QI P V RLCA I+GT+   LA CLGLD SK++ S 
Sbjct: 1184 AYPVDEVLKTDSGLKPDIDYYLHKQILPPVERLCAPIDGTNITMLAACLGLDTSKYRVST 1243

Query: 1295 PSETMSSDPS-SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
             S     D     L   + D  R++ C PL L C SC++ F    + ++   + S +   
Sbjct: 1244 VSGGAQQDTEIHPLESQIPDSMRFQSCTPLWLRCRSCTTVFPFQGLSATSPTTTSLQ--- 1300

Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
                +N        +CP E     +    +  Q++      ++ YY G ++CDD  C   
Sbjct: 1301 -TVSHN------GIQCPAEGCKQILQTLSVVAQLESSIRQLLASYYAGHLVCDDPQCGNR 1353

Query: 1414 TCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR----- 1465
            T S+++   R +G   +G        C G++  +  E D++ QL YF  L D  R     
Sbjct: 1354 TRSISVYGHRCLG--PKGLA----KDCLGKMHWEMREKDVWNQLLYFQSLFDVDRVAKGE 1407

Query: 1466 -GIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             G++  E   K+ +  E N+ R         V+   ER    WV+++ +
Sbjct: 1408 EGVKVEESRVKMKILAEQNRER--FGTLKGVVEAWLERNGRQWVQMDSL 1454



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)

Query: 21  ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDD 80
           +RA+AL  +KALR  G+    +  Y ++ E  +YDTV ED Y  +V R R +   FIVDD
Sbjct: 2   SRAKALAEIKALRAAGKTRLST--YEVEEEEQLYDTVDEDGYKKIV-RSRLDQDDFIVDD 58

Query: 81  DGLGYGDEGQEE------DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN-NQNVRK 133
           +G GY D+G+EE       +  A   S  +DE     ++ K++R E + K++  N  + K
Sbjct: 59  NGEGYVDDGREEWDDGQGRYHYAATDSEGEDERPAKGKAAKRKREEDKEKQDKINNGISK 118

Query: 134 PNPSLTAAAA 143
              + TAA A
Sbjct: 119 YFSAKTAAKA 128


>gi|326479330|gb|EGE03340.1| DNA polymerase alpha catalytic subunit [Trichophyton equinum CBS
            127.97]
          Length = 1467

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 449/1287 (34%), Positives = 660/1287 (51%), Gaps = 162/1287 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            KVK EV +D        A+ +TE    +   + W +V+    VL+   +       L CQ
Sbjct: 290  KVKKEVYDDPMASSP--ARATTE----MINPSSWNDVTNKLNVLNSSVTDMQRFGKLTCQ 343

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK    +++ S  V V N+ R +Y
Sbjct: 344  EA---VEEDGSLRFFWLDYTEI-----NGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLY 395

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P    +   +    E D E+                  +  E+ N +    V  + + 
Sbjct: 396  FLPREYKYVRGQSTSEEVDMED------------------VYGEVDNIMSRSKVEMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF   +IP    Y LK+ YP+  P LP +LKGE F  + GT+++  E F++ + 
Sbjct: 438  PCTRKYAFELPDIPKETEY-LKLMYPYTKPALPMELKGETFSHVFGTNTALFEQFVLWKN 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P DI +   S+ + E PP+T+ +++ +T
Sbjct: 497  IMGPCWLKIED-ADFTAVNGASWCKLECQVTNPADISLVPDSEEI-ETPPLTLMSLSFRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  ++   P  L    FTV+R  +   +P+GF 
Sbjct: 555  QLNVKENKQEIIVAS------ARVYENLSLNDTTPPENLPCKTFTVMRPSNLS-YPLGFE 607

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  
Sbjct: 608  AEA-----KKQRGTVMLEKTEQFLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLKEK 662

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           IAGRLLCD    +    +++
Sbjct: 663  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSDK------QLIAGRLLCDVANDMGKSLMMK 714

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 715  CQSWTLTEMCQLYLGEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLKL 774

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K     
Sbjct: 775  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKTQIK----- 829

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                     VEE   E+   D                Y GGLV EP+KGLYDK++L++DF
Sbjct: 830  ---------VEENEGEEDGADKKKKE----------KYKGGLVFEPEKGLYDKHVLVMDF 870

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 871  NSLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 930

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 931  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 990

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D + +A  +     + VN++YK LEID+D ++K
Sbjct: 991  TKELAETN-QLRVIYGDTDSVMINTNTDSVQEALKVGNDFKRLVNQRYKLLEIDIDNVFK 1049

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1050 RLLLHAKKKYAAINLSEVDGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1109

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1110 VVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGK 1169

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + Y++    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1170 SV--RPNDVISYVVTL--GDSETSSLPPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1225

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   + T     +   +L   + D  R+     
Sbjct: 1226 IERLCAPIPGTDAARLAECLGLDVRKYQISSNATHGQQETELCALESQIPDSIRFEKAAR 1285

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L C  C   STF+       +C                   L CP    E   G++  
Sbjct: 1286 LNLQCRFCRKKSTFEGLVASRDMCSP---------------NGLICP----EPSCGKVFT 1326

Query: 1381 GM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPR 1436
             + I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         
Sbjct: 1327 VISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE------G 1380

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQ--RGIEKMEISAKIPLEKELNKIRPVVALAA- 1493
            C GR+  +Y+E  LY QL YF  L D +  +G+ + E SA+        K   ++AL A 
Sbjct: 1381 CLGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGMAEKEASAE--------KREAILALIAW 1432

Query: 1494 ---------STVQRIRERCAYGWVKLN 1511
                     S V    ++C   WV+++
Sbjct: 1433 NRTRFDTVKSVVDGYLKKCGRQWVEMD 1459



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA+ L  LKALR  G++      Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRAKKLAELKALRASGQKR--LATYEVQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           D+G GY D+G+EE  D  +A   S SD   + G+ + +K+  + + K+E N  + K
Sbjct: 59  DNGEGYADDGREEWDDTRLAASDSESDGLPVRGKAAKRKREEDNKKKEEINNGINK 114


>gi|326471235|gb|EGD95244.1| DNA polymerase alpha catalytic subunit [Trichophyton tonsurans CBS
            112818]
          Length = 1467

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 448/1287 (34%), Positives = 657/1287 (51%), Gaps = 162/1287 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            KVK EV +D        A I       +   + W +V+    VL+   +       L CQ
Sbjct: 290  KVKKEVYDDPMASSPARATIE------MINPSSWNDVTNKLNVLNSSVTDMQRFGKLTCQ 343

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK    +++ S  V V N+ R +Y
Sbjct: 344  EA---VEEDGSLRFFWLDYTEI-----NGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLY 395

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P    +   +    E D E+                  +  E+ N +    V  + + 
Sbjct: 396  FLPREYKYVRGQSTSEEVDMED------------------VYGEVDNIMSRSKVEMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF   +IP    Y LK+ YP+  P LP +LKGE F  + GT+++  E F++ + 
Sbjct: 438  PCTRKYAFELPDIPKETEY-LKLMYPYTKPALPMELKGETFSHVFGTNTALFEQFVLWKN 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P DI +   S+ + E PP+T+ +++ +T
Sbjct: 497  IMGPCWLKIED-ADFTAVNGASWCKLECQVTNPADISLVPDSEEI-ETPPLTLMSLSFRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  ++   P  L    FTV+R  +   +P+GF 
Sbjct: 555  QLNVKENKQEIIVAS------ARVYENLSLNDTTPPENLPCKTFTVMRPSNLS-YPLGFE 607

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  
Sbjct: 608  AEA-----KKQRGTVMLEKTEQLLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLKEK 662

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           IAGRLLCD    +    +++
Sbjct: 663  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSDK------QLIAGRLLCDVANDMGKSLMMK 714

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 715  CQSWTLTEMCQLYLGEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLKL 774

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K     
Sbjct: 775  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKTQIK----- 829

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                     VEE   E+   D                Y GGLV EP+KGLYDK++L++DF
Sbjct: 830  ---------VEENEGEEDGADKKKKE----------KYKGGLVFEPEKGLYDKHVLVMDF 870

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 871  NSLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 930

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 931  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 990

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D + +A  +     + VN++YK LEID+D ++K
Sbjct: 991  TKELAETN-QLRVIYGDTDSVMINTNTDSVQEALKVGNDFKRLVNQRYKLLEIDIDNVFK 1049

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1050 RLLLHAKKKYAAINLSEVDGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1109

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1110 VVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGK 1169

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + Y++    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1170 SV--RPNDVISYVVTL--GDSETSSLPPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1225

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   + T     +   +L   + D  R+     
Sbjct: 1226 IERLCAPIPGTDAARLAECLGLDVRKYQISSNATHGQQETELCALESQIPDSIRFEKAAR 1285

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L C  C   STF+       +C                   L CP    E   G++  
Sbjct: 1286 LNLQCRFCRKKSTFEGLVASRDMCSP---------------NGLICP----EPSCGKVFT 1326

Query: 1381 GM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPR 1436
             + I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         
Sbjct: 1327 VISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE------G 1380

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQ--RGIEKMEISAKIPLEKELNKIRPVVALAA- 1493
            C GR+  +Y+E  LY QL YF  L D +  +G+ + E SA+        K   ++AL A 
Sbjct: 1381 CLGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGMAEKEASAE--------KREAILALIAW 1432

Query: 1494 ---------STVQRIRERCAYGWVKLN 1511
                     S V    ++C   WV+++
Sbjct: 1433 NRTRFDTVKSVVDGYLKKCGRQWVEMD 1459



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA+ L  LKALR  G++      Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRAKKLAELKALRASGQKR--LATYEVQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           D+G GY D+G+EE  D  +A   S SD   + G+ + +K+  + + K+E N  + K
Sbjct: 59  DNGEGYADDGREEWDDTRLAASDSESDGLPVRGKAAKRKREEDNKKKEEINNGINK 114


>gi|71841808|gb|AAZ43187.1| DNA polymerase alpha [Euplotes octocarinatus]
          Length = 1403

 Score =  637 bits (1644), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 442/1310 (33%), Positives = 692/1310 (52%), Gaps = 162/1310 (12%)

Query: 9    AGRRRSRGAEASARAEALERLKALRRG-GRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
            +GR+  +  ++ ++  AL  L  LR+G G+R+     Y +     I++ + ++EY+ L  
Sbjct: 6    SGRQVKKVGQSESKQNALSSLAKLRKGEGKRTDQ---YEVGEGKQIFEEMDDEEYEKLED 62

Query: 68   RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE- 126
             RR  A  FIV DD  GY D G E  W V        ++ LDG  + KK     RG K+ 
Sbjct: 63   ERR--ANNFIVGDDD-GYKDYGGE-IWEV--------EDDLDGDANDKKVN---RGNKQI 107

Query: 127  -----NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE 181
                 NNQ   K        A    KQ ++                 +ES +++ ++L +
Sbjct: 108  QNFFFNNQGDSKSKKKTLNNAPSANKQSITN----------------EESNAIMSDLLKK 151

Query: 182  FAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDV 241
                + ++E  +  + S    F   N      +    +  +V +++D           ++
Sbjct: 152  L---DDNKEDAKGDMDSKDNQFTGFNIYDQYDKKYDIAPPTVPKSAD-----------EM 197

Query: 242  VEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATA 301
            V E+++ + + DNS  L + ++  E      +E N       +++A IS E D  ++   
Sbjct: 198  VIEAEQEQVQIDNSFSLNQENDXKE------NEGNISANNNVEMSASISHEGDVEMADDN 251

Query: 302  GWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK 361
                    N+  ++ K  L        ++ D +L  + LD HE+    N   +YLFGKV 
Sbjct: 252  EPNNTESVNISREDKKLPL-------PLNSDNTLSVFWLDGHEE--SINQSEVYLFGKVY 302

Query: 362  AGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVA 419
              +   + S C+VV+ + R +Y +P    F+  +++     +E S++    F+       
Sbjct: 303  NPTYKRYSSICLVVRGINRIMYCVPKEE-FEIKDVL-----SEISKLFDDRFK------- 349

Query: 420  LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKG 479
                          ++  +   P+ + Y F +  +  G++ VL+I Y  +   LPA+L G
Sbjct: 350  --------------SIKKWKTKPISKNYCF-ETPMKKGQSEVLEIRYSTEYQQLPANLTG 394

Query: 480  ENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV 539
            + F  + G ++SALEL +++ K+ GP WL++ K        + SWC YEI VD P +I+ 
Sbjct: 395  KTFHHIFGKNTSALELLIIQLKLMGPCWLTV-KNPKINTQNKRSWCDYEIIVDVPSNIQC 453

Query: 540  SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGM 599
            +   K+    PP+ V ++ +K+  N+++ V EI   S +   +   D  +L ++ K    
Sbjct: 454  TIDDKNKPS-PPLKVMSLGMKSCKNQKK-VKEIFIISCITHEEVDCDKQLLKTDRK---- 507

Query: 600  LSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVL 659
            L  F++VRK D   FP+   +E          + +   ++E+ALL   + ++  +D D++
Sbjct: 508  LKSFSLVRKFDNIPFPIQLEEEIN-----ISKSYISKYTNEKALLEMFISKVATIDPDLI 562

Query: 660  VGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSC 718
            V H +     D L+ R +  +V  +MWS+IGR KR+++PKL RK  T  G    P    C
Sbjct: 563  VAHGLCEGFFDTLMDRIEKNKV--NMWSRIGRFKRNQVPKLNRKDGTSIGGFWMP--RQC 618

Query: 719  IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEY 778
              GRL+CDTFL SR+L+RE +Y LT+L K+   + R E  P+ +  +++    L++ I +
Sbjct: 619  TVGRLICDTFLSSRELIRETNYDLTELVKSXFGEIRDEFDPNLLPNLYKKSSDLVKTILH 678

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
             E DA  +++L+F LS++PLT+QLTNI+GNLW ++LQ ARA+R E+LLLH F    +I P
Sbjct: 679  TEKDANFTIQLLFKLSIIPLTKQLTNIAGNLWYRSLQNARAERNEWLLLHEFNRNNFICP 738

Query: 839  DKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLE 898
            DK    K TK   +  +                         +    ++  AY GGLVL+
Sbjct: 739  DKELNKKPTKDHDEDKD---------------------EEEEEKHGKRKKAAYEGGLVLD 777

Query: 899  PKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----SPDGL-----------VPHLP 943
            PK GLYDK +LLLDFNSLYPSIIQEYN+CFTTVER      DG            VP   
Sbjct: 778  PKPGLYDKIVLLLDFNSLYPSIIQEYNLCFTTVERCVTHDFDGREISDAKIDEVDVPVYD 837

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSN 1002
              +   +LP +LK LVQ RR VK  MK      K+ QL+I+Q+A+KLTANSMYGCLGFS+
Sbjct: 838  QKQGPAILPSILKMLVQARRAVKDQMKXEKDKGKLDQLEIKQKAIKLTANSMYGCLGFSS 897

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            SRFYAK +A LIT++GR+ L++T D+  N LN  V+YGDTDSIM+ +G +++ +A  I  
Sbjct: 898  SRFYAKAIAALITRKGRDALKATYDITTNVLNYNVVYGDTDSIMVSTGSNNLKEAIQIGD 957

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIERKGLDMVRRD 1121
            ++ +EVNKKYK LEI+LDG+++ +LLLKKKKYAA V     D   +   E KGLDMVRRD
Sbjct: 958  QIKKEVNKKYKNLEIELDGVFRSLLLLKKKKYAALVYTDLNDPNSFSKREVKGLDMVRRD 1017

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            W  LSK +G+  L +ILS ++ +++  ++     ++ E +++ ++ +  ++ITK LT+ P
Sbjct: 1018 WCPLSKAIGNQVLKEILSSKNQDEIQINLRAYFTEMAEKLKNNEITMSNFIITKQLTRAP 1077

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDT-VPYIICCEQGTSSGSSVGIAQRARHPD 1240
              Y + +  PHV +A R+ +    T     ++ VPYIIC       G S   AQRA HP+
Sbjct: 1078 SEYNNPETFPHVVIANRMIREQSKTISELTNSYVPYIIC------EGESKQYAQRAYHPE 1131

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
            E+ K +G   +D D+Y SQQI+P +SRL   IEG     + +C GLD  K
Sbjct: 1132 EIVKANGALKVDHDWYLSQQIYPPISRLIEHIEGIDGRFICECFGLDAKK 1181


>gi|302652611|ref|XP_003018152.1| hypothetical protein TRV_07848 [Trichophyton verrucosum HKI 0517]
 gi|291181764|gb|EFE37507.1| hypothetical protein TRV_07848 [Trichophyton verrucosum HKI 0517]
          Length = 1467

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 446/1287 (34%), Positives = 660/1287 (51%), Gaps = 162/1287 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            KVK EV +D        A+ +TE    +   + W +V+    VL+   +       L CQ
Sbjct: 290  KVKKEVCDDPMASSP--ARATTE----MINPSSWNDVTNKLNVLNSSVTDIQRFGKLTCQ 343

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK    +++ S  V V N+ R +Y
Sbjct: 344  EA---VEEDGSLRFFWLDYTEI-----NGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLY 395

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P              ++ +  R  P +    ++DV      E+ N +    V  + + 
Sbjct: 396  FLP--------------REYKYVRGQPTSEEVDMEDVY----GEVDNIMSRSKVEMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF   +IP    Y LK+ YP+  P LP +LKGE F  + GT+++  E F++ + 
Sbjct: 438  PCTRKYAFELPDIPKEAEY-LKLMYPYTKPALPIELKGETFSHVFGTNTALFEQFVLWKN 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P DI +   S+ + E PP+T+ +++ +T
Sbjct: 497  IMGPCWLKIED-ADFTAVNGASWCKLECQVTNPADISLVPDSEEI-ETPPLTLMSLSFRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  S+   P  L    FTV+R  +   +P+GF 
Sbjct: 555  QLNVKENKQEIIVAS------ARVYENLSLSDTTPPENLPCKTFTVMRPSNLS-YPLGFE 607

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    ++D DV++GH +   D +VLL R +  
Sbjct: 608  AEA-----KKQRGTVMLEKTEQFLLSKFLALFERIDPDVIMGHQLQEVDFNVLLSRLKEK 662

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           +AGRLLCD    +    +++
Sbjct: 663  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSD------RQLLAGRLLCDVANDMGKSLMMK 714

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 715  CQSWTLTEMCQLYLGEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLKL 774

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K+ +  
Sbjct: 775  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKTQIKIEE-- 832

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
             N G ED                         K+   Y GGLV EP+KGLYDK++L++DF
Sbjct: 833  -NEGEED---------------------GADKKKKEKYKGGLVFEPEKGLYDKHVLVMDF 870

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 871  NSLYPSIIQEFNICFTTVDRHTSSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 930

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 931  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 990

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D++ +A  +  +  + VN++Y+ LEID+D ++K
Sbjct: 991  TKELAETN-QLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFK 1049

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1050 RLLLHAKKKYAAINLSEVDGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1109

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1110 VVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGK 1169

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + YI+    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1170 SV--RPNDVISYIVTL--GDSETSSLQPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1225

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   + T         +L   + D  R+     
Sbjct: 1226 IERLCAPIPGTDAARLAECLGLDVRKYQISSNATHGQQEIELCALESQIPDSIRFEKAAR 1285

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK---CPEEVEAGR 1377
            L L C  C   STF+       +C                      P    CPE      
Sbjct: 1286 LNLHCRFCRKKSTFEGLVASRDMC---------------------SPNGLLCPEPSCGKA 1324

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNY 1434
             +   I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R       
Sbjct: 1325 FTVISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE----- 1379

Query: 1435 PRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA- 1493
              C GR+  +Y+E  LY QL YF  L D ++     E  A +      +K   ++AL A 
Sbjct: 1380 -GCLGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGMAEKEASV------DKREAILALIAW 1432

Query: 1494 ---------STVQRIRERCAYGWVKLN 1511
                     S V    ++C   WV+++
Sbjct: 1433 NRTRFDTVKSVVDGYLKKCGRQWVEMD 1459



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA+ LE LKALR  GR+    + Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRAKKLEELKALRASGRKR--LLTYEVQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           D+G GY D+G+EE  D  +A   S SD   + G+ + +K+  + + K+E N  + K
Sbjct: 59  DNGEGYADDGREEWDDTRLAASDSDSDGLPVRGKAAKRKREEDNKKKEEINNGINK 114


>gi|195498574|ref|XP_002096581.1| GE24967 [Drosophila yakuba]
 gi|194182682|gb|EDW96293.1| GE24967 [Drosophila yakuba]
          Length = 1492

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 427/1172 (36%), Positives = 629/1172 (53%), Gaps = 120/1172 (10%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVV 372
            D+ +  +   + E  +  D  L F+  +A+E      M G ++LFG+   G    S C+ 
Sbjct: 344  DDFEKSVLTTDQESTISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLR 398

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V+N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL  
Sbjct: 399  VQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKL 446

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHS 490
                +  V+     +A G  E+P   +Y L+++Y  K P   L A+ K  +   + G  +
Sbjct: 447  EFFRSRKVTKSFAHHAIG-IEVPQTCDY-LEVHYDGKKPLPNLSANKKYNSIAHIFGATT 504

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   PAP  +SWC  E+T+  PK++ +       A  P
Sbjct: 505  NALERFLLDRKIKGPCWLQVTGFKVNPAP--MSWCNIEVTLTEPKNVELVQDRGKPAPPP 562

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T+ A+N++T  N +   NEI   S++  ++  ID P       +P    H   + +  
Sbjct: 563  PLTILALNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 617

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               +P+  N E     +K  S  +    SERALL+  + +  K+D+D++V  +     L+
Sbjct: 618  VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 673

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    
Sbjct: 674  VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 718

Query: 731  SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    +
Sbjct: 719  AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 778

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK   V   
Sbjct: 779  RLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKVPVS-- 836

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                +RS  G          + +A F   +  +   + K+  AYAGGLVLEP +GLY+KY
Sbjct: 837  ----KRSAAG----------DAEATF---SGADATLQSKKKAAYAGGLVLEPLRGLYEKY 879

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKT-TGVLPELLKNLVQRRRMV 965
            +LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SKT  G+LP  LK LV+ R+ V
Sbjct: 880  VLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSKTEAGILPLQLKRLVESRKEV 939

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL
Sbjct: 940  KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREIL 998

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             ST  LVQ  LN +V+YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG+
Sbjct: 999  TSTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDIDGV 1057

Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +  +LLLKKKKYAAVK+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE
Sbjct: 1058 FGCLLLLKKKKYAAVKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1116

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ 
Sbjct: 1117 KPLEEKLDAVHAQLEKIKTQIAEGAVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN 1176

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
            +   +     GD V Y+IC +     G++    QRA H DELK   D K  +D +YY   
Sbjct: 1177 RER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDELKASEDKKLQLDTNYYLGH 1230

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEE 1315
            QIHPVV+R+   +EGT   R+A+CLG+DP+KF    Q    E        SLL      +
Sbjct: 1231 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQQENTEQSEGESLLKTTL--Q 1288

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
             YR CEP    C +C          +   M+ + +P    +     +    P+C      
Sbjct: 1289 LYRLCEPFRFQCVTCK---------AEQLMATAYRPGPSNSHIAVLQQCANPEC------ 1333

Query: 1376 GRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVC 1431
             + +P      + NQ++     +V  +YK  ++CD   C + T + +LR      + +  
Sbjct: 1334 -QTAPIQYLASVRNQLQLSMRRYVQRFYKNWLVCDHPDCNFNTRTHSLR------KKSHR 1386

Query: 1432 PNYPRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
            P   +C +G L+R+YTE DLY QL Y   + D
Sbjct: 1387 PLCQKCRSGSLLRQYTERDLYNQLCYLRFMFD 1418


>gi|327302928|ref|XP_003236156.1| DNA polymerase alpha catalytic subunit [Trichophyton rubrum CBS
            118892]
 gi|326461498|gb|EGD86951.1| DNA polymerase alpha catalytic subunit [Trichophyton rubrum CBS
            118892]
          Length = 1467

 Score =  634 bits (1635), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 440/1284 (34%), Positives = 654/1284 (50%), Gaps = 156/1284 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            KVK EV +D        A+ +TE    +   + W +V+    VL+   +       L CQ
Sbjct: 290  KVKKEVYDDPMASSP--ARATTE----MINPSSWNDVTNKLNVLNSSVTDMQRFGKLTCQ 343

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK    +++ S  V V N+ R +Y
Sbjct: 344  EA---VEEDGSLKFFWLDYTEI-----NGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLY 395

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P    +   +    E D E+                  +  E+ N +    V  + + 
Sbjct: 396  FLPREYKYVRGQSTSEEVDMED------------------VYGEVDNIMSRSKVEMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF   +IP    Y LK+ YP+  P LP +LKGE F  + GT+++  E F++ + 
Sbjct: 438  PCTRKYAFELPDIPKEAEY-LKLMYPYTKPALPMELKGETFSHVFGTNTALFEQFVLWKN 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P +I +   S+ + E PP+T+ +++ +T
Sbjct: 497  IMGPCWLKIED-ADFTAVNGASWCKLECEVTNPAEISLVPDSEEI-ETPPLTLMSLSFRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  S+   P  L    FTV+R  +   +P+GF 
Sbjct: 555  QLNVKENKQEIIVAS------ARVYENLSLSDTTPPENLPCKTFTVMRPSNLS-YPLGFE 607

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  
Sbjct: 608  AEA-----KKQRGTVMLEKTEQFLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLKEK 662

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           +AGRLLCD    +    +++
Sbjct: 663  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSD------RQLLAGRLLCDVANDMGKSLMMK 714

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 715  CQSWTLTEMCQLYLGEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLKL 774

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K+ +  
Sbjct: 775  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKNQIKVEENE 834

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                  D+  +E                           GGLV EP+KGLYDK++L++DF
Sbjct: 835  GEEEGVDKKKKEKY------------------------KGGLVFEPEKGLYDKHVLVMDF 870

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 871  NSLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 930

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 931  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 990

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D++ +A  +  +  + VN++Y+ LEID+D ++K
Sbjct: 991  TKELAETN-QLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFK 1049

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1050 RLLLHAKKKYAAINLSEVDGKYVERLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1109

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1110 VVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGK 1169

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + YI+    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1170 SV--RPNDVISYIVTL--GDSETSSLQPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1225

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   + T     +   +L   + D  R+     
Sbjct: 1226 IERLCAPIPGTDAARLAECLGLDVRKYQISSNATHGQQETELCALESQIPDSIRFEKAAR 1285

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L C  C   STF+       +C                  +     CPE       + 
Sbjct: 1286 LTLQCRFCRKKSTFEGLVASRDMC------------------SPNGLLCPEPSCGKAFTV 1327

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRC 1437
              I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         C
Sbjct: 1328 ISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE------GC 1381

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA---- 1493
             GR+  +Y+E  LY QL YF  L D ++     E  A +       K   ++AL A    
Sbjct: 1382 LGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGMAEKEASV------EKREAILALIAWNRA 1435

Query: 1494 ------STVQRIRERCAYGWVKLN 1511
                  S V    ++C   WV+++
Sbjct: 1436 RFDTVKSVVDGYLKKCGRQWVEMD 1459



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 5/116 (4%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA+ L  LKALR  G++   +  Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRAKTLAELKALRASGKKRLST--YEVQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           D+G GY D+G+EE  D  +A   S SD   + G+ + +K+  + + K+E N  + K
Sbjct: 59  DNGEGYADDGREEWDDTRLAASDSDSDGLPVRGKAAKRKREEDNKKKEEINNGINK 114


>gi|320034062|gb|EFW16008.1| DNA polymerase alpha catalytic subunit [Coccidioides posadasii str.
            Silveira]
          Length = 1449

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 494/1564 (31%), Positives = 755/1564 (48%), Gaps = 195/1564 (12%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G+ +  ++    + +N              V R+R +   F+V
Sbjct: 2    ASARAK-LAELRALRASGKETSRNLR---RYKN--------------VVRQRLDRDDFVV 43

Query: 79   DDDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEK-RGKKENN------- 128
            DD+G GY D+G+EE  D       + SD+  L G+ + +K+  +K R +K NN       
Sbjct: 44   DDNGEGYADDGREEWDDRRRVDSGTDSDEPPLRGKAAKRKREEDKQRREKINNGINKYFS 103

Query: 129  -----QNVRKPNPSLTA-----AAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEV 178
                  N  KP  + TA      A ++G+  ++ + +  ++ K  K E  ++   +   +
Sbjct: 104  GAYGTSNASKPKRNATAEDEAFMADLLGEVDVNVVPSRVSVKKPVKSETRRKVRIISPPL 163

Query: 179  LAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDL----INNFV 234
              E  P +   ++      ++++    ++       L       V  +       +   V
Sbjct: 164  SQERTPKKVQAKKEPTPHKADVELKSDIDFDDDVGLLPVGDDEDVPMSDPPPSSPVAKAV 223

Query: 235  QIQNCDVVEESKELKWESDNSTELT-----------KRDNFVEVKEKVKDEVNEDVKECK 283
            + +N  +V++  E   + D+   +T            R N    +   K +V E      
Sbjct: 224  ERKNASLVKKEDEGADDIDDEDLVTIEATGHHENNATRVNMTGKRPAPKLKVKESFYPSP 283

Query: 284  KLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNC---QESEFEVDDDGSLPFYIL 340
              +  +    D + +++  W +++    VL    S ++      ++  V+ DGSL F+ L
Sbjct: 284  ATSPPVRANSDAIDASS--WTDITRKLNVLSSPASDMHAFGKLRAQDAVETDGSLRFFWL 341

Query: 341  DAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLE 398
            D  E       G+L LFGKVK    S   S  V + N+ R +Y +P        +    E
Sbjct: 342  DYTEV-----NGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYRLHHGQNTDDE 396

Query: 399  KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
             D E+                  +  E+   +  L V+ + + P  R+YAF    IP   
Sbjct: 397  IDMED------------------VSNEVDELMTKLRVNVHKIKPCTRKYAFELPNIPKKA 438

Query: 459  NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPA 518
             Y LK+ YP+  P LP D+KGE F  + GT+++  E F++ + + GP WL I   +   A
Sbjct: 439  KY-LKLMYPYDKPVLPIDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIED-ADFTA 496

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVV 578
                SWCK E  V  P  I   S ++++ + P +T+ ++ L+T  N +++  EI++ S  
Sbjct: 497  VSGASWCKLECQVSQPALISSISDAENL-DTPTLTLMSLALRTQLNVKENKQEILAMSAR 555

Query: 579  CCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
                  +  P        P  L    FTV+R L G  +P+GF  E     ++        
Sbjct: 556  VYENVSLTDPT------PPAKLPCKTFTVMRPL-GPTYPIGFEAE-----TRKHRGTFML 603

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
            E SE+ LL++ +    K+D DV++GH +   DL VL++R +  R P   W +IGR+KRSE
Sbjct: 604  EKSEQFLLSKFLALFEKMDPDVVMGHQLQEVDLTVLINRLKEKRTPG--WHRIGRMKRSE 661

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQLN--K 752
             PK  KG   F           +AGRL+CD    +    +++  S+SLT++ +  L    
Sbjct: 662  WPKNFKGTGFFAE------RHLVAGRLICDIGNDMGKSLMMKCQSWSLTEMCQLYLGDGN 715

Query: 753  DRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
             R+++     LK + T  E LM  I + E D +    L+  L +L LT+ LTN++GN W 
Sbjct: 716  TRRDIDNEAALKTWATSKEGLMNYINHAEADTYFIAALVLKLQMLSLTKVLTNLAGNSWA 775

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G RA+R EY+LLH F   KYI PDK+    + KM              EE   ED 
Sbjct: 776  RTLMGTRAERNEYILLHEFYRNKYICPDKYFGKSQPKM--------------EEYEGEDD 821

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
              D                Y GGLV EP+KGLYDKY+L++DFNSLYPSIIQEYNICFTTV
Sbjct: 822  GGDKKKKD----------KYKGGLVFEPEKGLYDKYVLVMDFNSLYPSIIQEYNICFTTV 871

Query: 932  ERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
             R        +  VP +P+ +  G+LP L+  LV RRR VK  MK   A+  ++   D +
Sbjct: 872  NRELVSENENEEKVPEVPADQEQGILPRLISTLVSRRREVKKLMKNKRATPEELALWDTK 931

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL++T +L + N  L VIYGDTD
Sbjct: 932  QLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNTKELAEKN-QLRVIYGDTD 990

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI++ +D++ +A  +  +  + VN  YK LEID+D +++R+LL  KKKYAA+ +   D
Sbjct: 991  SVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRLLLHAKKKYAAINMTEVD 1050

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G   + +E KGLDM RR++  LSKEV    L++ILS    E V+  +++ L ++ + M+ 
Sbjct: 1051 GKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEILSGDDTEVVLGKVYDYLRELTQKMKE 1110

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              + ++KYVI   L+K P+ YP+ ++ P VQVALR    G +      D + YI+    G
Sbjct: 1111 FTIPVQKYVIFTKLSKRPDEYPNKESMPPVQVALRELARGKTV--RPNDVISYIVT--SG 1166

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             S  SS+  A+R+  P ++ K D     DI+YY  +QI P + RLCA I GT   +LA+C
Sbjct: 1167 DSETSSLQPAKRSYTPQDVMKPDSGLKPDIEYYLLKQIFPPIERLCAPIPGTDAVQLAEC 1226

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA-----VGDEERYRGCEPLILSCPSCS--STFDC 1336
            LGLD  K+Q     T SS    SL        + D  R+       L C +C   + F+ 
Sbjct: 1227 LGLDVRKYQIN---TSSSHGQQSLELCPLESQIPDSLRFEKAARFTLRCRACHERTVFEG 1283

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
              + + IC                 + L CP          IS   I  Q++ Q     +
Sbjct: 1284 LNISTDICTP---------------KGLVCPNSNCRKPFSVIS---IVAQLESQIRAQTT 1325

Query: 1397 MYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             YY+G ++CDD  C   T  +++   R +G   R         C GR+  +YTE  LY Q
Sbjct: 1326 RYYEGWIVCDDSACGNRTRQMSVYGHRCLGPRGRAE------GCLGRMSYEYTEKQLYNQ 1379

Query: 1454 LTYFCHLLDTQRGIEKMEISA------KIPLEKELNKIRPVVALAASTVQRIRERCAYGW 1507
            L YF  L D  +     E  A      K+    E N+ R         V    ++C   W
Sbjct: 1380 LLYFATLWDVDKAKATAEKEASGEKKEKVLALVEWNRTR--FGTMKGVVDEYLKKCGRQW 1437

Query: 1508 VKLN 1511
            V+++
Sbjct: 1438 VEMD 1441


>gi|315041206|ref|XP_003169980.1| DNA polymerase alpha catalytic subunit [Arthroderma gypseum CBS
            118893]
 gi|311345942|gb|EFR05145.1| DNA polymerase alpha catalytic subunit [Arthroderma gypseum CBS
            118893]
          Length = 1465

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 444/1287 (34%), Positives = 658/1287 (51%), Gaps = 162/1287 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            K+K E+ +D        A+ +TE    +   + W +V+    VL+   +       L CQ
Sbjct: 288  KIKKEIYDDPMASSP--ARATTE----MINPSSWNDVTSKLNVLNSSVTDMQRFGKLTCQ 341

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK    +++ S  V V N+ R +Y
Sbjct: 342  EA---VEEDGSLRFFWLDYTEI-----NGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLY 393

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P    +   +    E D E+                  +  E+   +    V  + + 
Sbjct: 394  FLPREYKYTRGQTTSEEVDMED------------------VYGEVDTLMSRSKVEMHKIK 435

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF    IP    Y LK+ YP+  P LP DLKGE F  + GT+++  E F++ + 
Sbjct: 436  PCTRKYAFELPGIPKEAEY-LKLMYPYTKPALPMDLKGETFSHVFGTNTALFEQFVLWKN 494

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P +I +   S+ + E PP+T+ +++ +T
Sbjct: 495  IMGPCWLKIED-ADFTAVNGASWCKLECQVTNPAEISLVPDSEEI-ENPPLTLMSLSFRT 552

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  S+   P  L    FTV+R  +   +P+GF 
Sbjct: 553  QLNVKENKQEIIVAS------ARVYENLSLSDTTPPENLPCKTFTVMRPSNVS-YPLGFE 605

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  
Sbjct: 606  VEA-----KKQRGTVMLEKTEQFLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLKEK 660

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           +AGRLLCD    +    +++
Sbjct: 661  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSD------RQLLAGRLLCDVANDMGKSLMMK 712

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L++   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 713  CQSWTLTEMCQLYLSEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLRL 772

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K+ +  
Sbjct: 773  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKTQIKVEE-- 830

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
             N G ED                         K+   Y GGLV EP+KGLYDK++L++DF
Sbjct: 831  -NEGDED---------------------GADKKKKEKYKGGLVFEPEKGLYDKHVLVMDF 868

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 869  NSLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 928

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 929  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 988

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D++ +A  +  +  + VN++Y+ LEID+D ++K
Sbjct: 989  TKELAETN-QLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFK 1047

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1048 RLLLHAKKKYAAINLSEVDGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1107

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1108 VVLNKIHDYLRELTQKMHEYTIPVQKYVIYTKLSKRPDEYPNKETMPPAQVALRELARGK 1167

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + YI+    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1168 SV--RPNDVISYIVTL--GDSETSSLQPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1223

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q  S  +         +L   V D  R+     
Sbjct: 1224 IERLCAPIPGTDAARLAECLGLDVRKYQISSNANHGQQETELCALESQVPDSIRFEKAAR 1283

Query: 1323 LILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK---CPEEVEAGRIS 1379
            L L C  C  T     + +S                   R +  P    CP+       +
Sbjct: 1284 LNLQCRFCRKTATFEGLVAS-------------------REMCSPNGLICPDASCGKAFT 1324

Query: 1380 PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPR 1436
               I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         
Sbjct: 1325 VISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQISVYGQRCLGPRGRAE------G 1378

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQ--RGIEKMEISAKIPLEKELNKIRPVVALAA- 1493
            C GR+  +Y+E  LY QL YF  L D +  +GI + E S        + K   ++AL A 
Sbjct: 1379 CLGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGIAEKEAS--------VEKREAILALVAW 1430

Query: 1494 ---------STVQRIRERCAYGWVKLN 1511
                     S V    ++C   WV+++
Sbjct: 1431 NRTRFETVKSVVDGYLKKCGRQWVEMD 1457



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 25/164 (15%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA  L  LKALR  G++      Y ++ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRANKLAELKALRASGKKR--LATYEVEEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN------- 130
           D+G GY D+G+EE  D   A   S SDD  + G ++ K++R E+  +KE  +N       
Sbjct: 59  DNGEGYADDGREEWDDTRPAASDSDSDDLPVRG-KAAKRKREEESKRKEKIENGINKYFT 117

Query: 131 ------VRKPNPSLTA-----AAAMMGKQRLSAMLTSTAMFKKS 163
                   KP P  TA      A ++G    + + TS A  KKS
Sbjct: 118 ATLTKQTSKPKPVATADDEAFLADILGDVE-TNIATSNAPVKKS 160


>gi|255950462|ref|XP_002565998.1| Pc22g21010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593015|emb|CAP99389.1| Pc22g21010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1461

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 427/1222 (34%), Positives = 641/1222 (52%), Gaps = 142/1222 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNG 386
            V+DDGSL  + LD  E       G+L LFGKVK     ++ S  V V N+ R +Y +P  
Sbjct: 339  VEDDGSLRIFWLDYTEV-----NGSLCLFGKVKNKQNGSYTSAFVKVDNILRKLYFLPR- 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                  E       A E  +        +QDV     +E+   +  L V  + + P +R+
Sbjct: 393  ------EYRYKHGRATEEEVG-------MQDVY----SEVDEMMSKLKVGMHKMKPCERK 435

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y LK+ YP+    LP + KGE F ++ GT++S  E F++ + + GP 
Sbjct: 436  YAFEMPGVPKEAEY-LKLLYPYDKAALPMETKGETFSNVFGTNTSLFEQFVLWKNIMGPC 494

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I + +   A    SWCK+E     P  I +   S+++ + PP+T+ +++ +T  N +
Sbjct: 495  WLKIDQ-ADFAAVTNASWCKFECQATKPALISLVPDSENL-DAPPLTLMSLSFRTQLNVK 552

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
            ++  EI+ AS      A++   +  ++   P  L    FTV+R   GG +PM F  EA  
Sbjct: 553  ENKQEILVAS------ARVYEDVSLTDTTPPEKLPCKTFTVMRPA-GGSYPMHFEAEA-- 603

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
               + G+ +L  E SE+ LL+R +    K+D DV++GH +   DL +LL R +  + P  
Sbjct: 604  -RKQRGTVIL--ERSEQFLLSRFLAMFEKMDPDVIMGHQLQDVDLGILLSRMREKKTPG- 659

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGRL+R + PK   KG   F           IAGRL+CD    +    +++  S+S
Sbjct: 660  -WHRIGRLRRGDWPKNFNKGGNFFAE------RQLIAGRLMCDVANDMGKSLMMKCQSWS 712

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L +   R+E+     LK + T  E LM  + + +TD +    L+  L +LPL
Sbjct: 713  LTEMCQLYLGQGNVRQEIDVEAALKTWATTKEGLMNFVNHCDTDTYFVAALVLRLQMLPL 772

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN +GN W +TL G RA+R EY+LLH F   KYI PDK  Y    + A+++   G 
Sbjct: 773  TKVLTNTAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDK--YSSRLQKAEEKMQDGD 830

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            +D  +++   +                       GGLV EP+KGLYD+++L++DFNSLYP
Sbjct: 831  DDEALDKKKKDKF--------------------KGGLVFEPEKGLYDRFVLVMDFNSLYP 870

Query: 919  SIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT 971
            SIIQEYNICFTTV+R+          VP +PSS +  GVLP L+  LV RRR VK  MK 
Sbjct: 871  SIIQEYNICFTTVDRTATAENENEEKVPDVPSSEQEQGVLPRLIATLVNRRREVKKLMKD 930

Query: 972  --ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+T +L 
Sbjct: 931  KRATPEQLAIWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNTKELA 990

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            ++   L VIYGDTDS+MI++ +D+++ A  +  +  + VN++Y+ LEID+D +++R+LL 
Sbjct: 991  ESQ-QLRVIYGDTDSVMINTNMDNMSDAIKVGEEFKKSVNERYRLLEIDIDNIFRRLLLH 1049

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYAAV +   DG   E +E KGLDM RR++  LSKEV    L++ILS    E V+  
Sbjct: 1050 AKKKYAAVNLTEVDGKYVEKLEVKGLDMKRREYCSLSKEVSSKLLNEILSGEDQEVVLNK 1109

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            IH  L ++   M+   + ++KYVI   L+K P+ YP+ ++ P  QVALR    G +    
Sbjct: 1110 IHEYLRELAGRMKEYTIPVQKYVIYTKLSKRPQEYPNKESMPPAQVALREIARGKTV--R 1167

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
              D + YI+    G S  SS+  A+R+  P ++ K D     D+++Y  +QI P + RLC
Sbjct: 1168 PNDVISYIVT--NGDSETSSLPPAKRSYSPQDVLKPDSGLRPDVEFYILKQIFPPIERLC 1225

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS--SSLLFAVGDEERYRGCEPLILSC 1327
            A I GT   RLA+CLGLD  K+Q   S +     +  + L   + D  R+   + L L C
Sbjct: 1226 APIPGTDAVRLAECLGLDTRKYQINTSSSSGQQNAEITPLESQIPDSVRFANSKRLSLRC 1285

Query: 1328 PSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
              C   S ++     S +C                  T     CP +      S   I  
Sbjct: 1286 RYCKEQSVYEGLVTSSHMC------------------TAHGIICPNQSCQKPFSVMTIVA 1327

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q    +S YY+G ++CDD +C   T  +++   R +G   R         C GR+ 
Sbjct: 1328 QLENQIREQISRYYEGWLVCDDSSCGNRTRQISVYGHRCLGPRGRAE------GCLGRMS 1381

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA--------- 1493
             +Y+E ++Y QL YF  L D ++        AK+  EKE  + +  VA  A         
Sbjct: 1382 YEYSEKEVYNQLLYFAGLWDVEK--------AKVAAEKETGEKKDSVAALAEFNRTRFGT 1433

Query: 1494 --STVQRIRERCAYGWVKLNDI 1513
                V    ++C   WV+++ +
Sbjct: 1434 IKGVVDSYLKKCGRQWVEMDGL 1455



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 24  EALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGL 83
           E L  L+ALR  G++   +  Y ++ +  IYD V +D Y  ++ R R +   F+VDD+G 
Sbjct: 6   ERLAELRALRASGKKRIST--YEVEDQGDIYDEVDDDGYKKVI-RNRLDQDDFVVDDNGA 62

Query: 84  GYGDEGQEEDWS--VAGLPSSSDDESLDGQRSIKKQRIEKRGKKE--NNQNVRKPNPSLT 139
           GY D+G+E  W+   A   S   DE     ++ K++R E++ +KE  NN   +  N    
Sbjct: 63  GYADDGREV-WNEQTAEYDSDESDELPTRGKAAKRKREEEQQRKEKMNNGISKYFNKGQA 121

Query: 140 AAAA 143
           AA+A
Sbjct: 122 AASA 125


>gi|317026709|ref|XP_001399392.2| DNA polymerase alpha catalytic subunit [Aspergillus niger CBS 513.88]
          Length = 1444

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 478/1470 (32%), Positives = 725/1470 (49%), Gaps = 196/1470 (13%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
            SA    L  L+ALR  G++   +  Y ++ +  IY+ V ++ Y  ++ R R +   F+VD
Sbjct: 2    SASRAKLAELRALRAAGKKRLST--YEVEEQGDIYEEVDDEGYKKII-RNRLDQDDFVVD 58

Query: 80   DDGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN------ 130
            D+G GY D+G+E   E  +  G   S DDE     ++ K++R E++ ++E   N      
Sbjct: 59   DNGEGYADDGREVWNERTADYGDSESEDDELPARGKAAKRKREEEKQRQEKINNGISKYF 118

Query: 131  -------VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFA 183
                     KP P  TA         L  + T+    +      VK        +L+   
Sbjct: 119  NSGAAPSAPKPKPVATAEDDAFMADLLGEVDTNVVPHRVPTRNIVKTEARRKVRILS--- 175

Query: 184  PDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVE 243
            P  ADR R+ R +  +            NS  V+   +  + N D  +  +   + D V 
Sbjct: 176  PPLADRTRKERPIKKD-----------ENSDPVSPVKDQPELNFDDDDGALPGMDDDDVP 224

Query: 244  ESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA---------------- 287
             S  +   S  S  + ++     VK +  D+ + D+ E  ++                  
Sbjct: 225  MSDPMP-SSPISKAVERKSTTTPVKVEEFDDDDNDIMEIAQVTGQNDAKATSINMAGSRP 283

Query: 288  --KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE--------------VDD 331
              K+  E  P L++++  K +   +   ++ +S LN   S                 V++
Sbjct: 284  PPKLKKESTPALASSSPTKPMPEVDASWNDVRSKLNVLSSPASSEMRSFGKLRAQDVVEE 343

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP----- 384
            DGSL  + LD  E       G+L LFGKVK     ++ S  V V N+ R +Y +P     
Sbjct: 344  DGSLRMFWLDFTEV-----NGSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRH 398

Query: 385  -NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
             NG   +TDE + +E                       +  E+   +  L V  + + P 
Sbjct: 399  KNG--RETDEEVDME----------------------DVYHEVDGMMSRLRVGMHKMKPC 434

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R+YAF    +P    Y LK+ YP+   PLP D+KGE F  + GT++S  E F++ + + 
Sbjct: 435  TRKYAFELPGVPKETEY-LKLFYPYDKSPLPMDVKGETFSHVFGTNTSLFEQFVLWKNIM 493

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I + +   A    SWCK+E     P  I     S+++ E PP+T+ +++ +T  
Sbjct: 494  GPCWLKIEE-ADFTAVNNASWCKFECQAAKPALISPVPDSENL-EAPPLTLMSLSFRTQL 551

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKE 621
            N  ++  EI+ AS      A++   +  ++   P  L    FTV+R   G  +PM F  E
Sbjct: 552  NVTENKQEILVAS------ARVYENVSLTDTTPPERLPCKTFTVMRPA-GSSYPMHFEAE 604

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
                 ++        E SE+ LL++ +    K+D DVL+GH +   DL +LL R +  + 
Sbjct: 605  -----TRKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLSRLKEKKT 659

Query: 682  PSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREV 738
            P   W ++GRLKR + PK   +G   F           IAGRL+CD    +    +++  
Sbjct: 660  PG--WHRLGRLKRGDWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQ 711

Query: 739  SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSV 795
            S+SLT++    L K+  R+E+     LK + T  + LM  + + + D +    L+  L +
Sbjct: 712  SWSLTEMCDLYLGKENARQELDCEAALKTWATTKDGLMNFVNHCDADTYFIAALVLRLQM 771

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LPLT+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +K+ K    
Sbjct: 772  LPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLLK---- 823

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                    EE   E  + ++               Y GGLV EP+KGLYDK+IL++DFNS
Sbjct: 824  -------AEEKMQEGDDDESADKKKKD-------KYKGGLVFEPEKGLYDKFILVMDFNS 869

Query: 916  LYPSIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTW 968
            LYPSIIQEYNICFTTVER+          VP +P+S +  G+LP+L+  LV RRR VK  
Sbjct: 870  LYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREVKKL 929

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 930  MKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTK 989

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            +L ++   L VIYGDTDS+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 990  ELAESK-QLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFRRL 1048

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L+++LS    E V
Sbjct: 1049 LLHAKKKYAAINMTEVDGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQEVV 1108

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  +H+ L ++ E MR   V ++KYVI   L+K PE YP+ ++ P VQVALR    G S 
Sbjct: 1109 LNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPEEYPNKESMPPVQVALRELARGKSV 1168

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + Y++    G +  SS+  A+R+    ++ K D     DI++Y  +QI P + 
Sbjct: 1169 --RPNDVISYVVT--NGDAETSSLAPAKRSYTLQDVMKPDSGLKPDIEFYLLKQIFPPIE 1224

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEP 1322
            RLCA I GT   RLA+CLGLD  K+Q   S    S+  ++ +F     + D  R+     
Sbjct: 1225 RLCAPIPGTDAVRLAECLGLDVRKYQINSSS--GSNQQNADIFPLESQIPDSVRFENATR 1282

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
            L L+C  C   S F+  A  + +C                  T     CP +      S 
Sbjct: 1283 LTLTCRFCKEKSVFEGLAQSTHMC------------------TANGIICPNQACQKPFSV 1324

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
              I  Q++ Q     S YY+G ++CDD  C
Sbjct: 1325 LTIVAQLEAQIRAQTSKYYEGWLVCDDTAC 1354


>gi|383863019|ref|XP_003706980.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
            subunit-like [Megachile rotundata]
          Length = 1380

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 496/1480 (33%), Positives = 732/1480 (49%), Gaps = 208/1480 (14%)

Query: 10   GRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNI-KLENPIYDTVAEDEYDALVAR 68
             R + +  + + R  ALE+LK L+      G    Y I +LEN +Y+ V E EY   V  
Sbjct: 7    NRSKRQKVDKTGRLSALEKLKQLK------GSKHKYEIDELEN-VYEEVDEKEYSKTVIE 59

Query: 69   RREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
            R+ +   +IVDD   GY ++G+E             D+ LD + SI++ R  K       
Sbjct: 60   RQSD--DWIVDDGNSGYVEDGRE-----------IFDDDLDDE-SIQEARKNKLA----- 100

Query: 129  QNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD 188
                   P  +       K  +  M+ +  M  K K +   + ++++ ++++E   ++  
Sbjct: 101  ------GPKKSKKDEKKKKGNIQNMIMN--MPSKKKVDIALDHDNILGDLMSELKKNDTP 152

Query: 189  RERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKEL 248
            +    R+V +N     SV S +++SQ + +   S+  +S+ +++    +N      S+ +
Sbjct: 153  KRSETRTVKNN-GQLQSVISNQSSSQTIIDDDESIDNSSNTVSDIKSKENIKDPSASQII 211

Query: 249  KWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSG 308
            + ES++ ++     N     +    EV+ +V +  +L   + T  D              
Sbjct: 212  ETESEDLSQFMGDVNSDFEMQISNIEVSAEVSDTTELPLPLVTNSD-------------- 257

Query: 309  GNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--H 366
                          +E  F         FY  DA E       G +YLFGKV   S   +
Sbjct: 258  --------------KEEVFR--------FYYWDACED-PFKQPGIVYLFGKVFVPSIKEY 294

Query: 367  HSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEI 426
             SCCV VKN+ R +Y +P          + ++  +EE+   P      ++DV        
Sbjct: 295  RSCCVTVKNVPRRIYLLPR---------LYIKTSSEENGQEPQL--NTIEDVYKEF---- 339

Query: 427  ANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSL 485
             NQ  N + +  +  S V + YAF Q   PA   Y L++ Y    P +P D  G +   +
Sbjct: 340  -NQFANKVGIKEFRCSKVTKYYAFEQEGTPAKSEY-LEVRYSANCPAMPFDYSGPSIERV 397

Query: 486  LGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV--SWCKYEITVDSPKDIRVSSSS 543
             GT  +ALEL L++R +KGP WL I     CP P  V  SWCK ++     ++I V S S
Sbjct: 398  FGTTVNALELLLIERNIKGPCWLDIK----CPLPTGVQTSWCKIKVNCMKIENISVFSES 453

Query: 544  KHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHF 603
            +    +PP+ V  +N++T  N +Q  NE+V  +++  HK  ID      E  KP    H 
Sbjct: 454  Q---ALPPLVVMTLNIQTALNSKQQ-NEVVVVAILIHHKYHID-----KEPPKPPFQQHI 504

Query: 604  TVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
             ++       +P    ++A +  S      +    +E  LL  L+  +   D D L+G++
Sbjct: 505  CLITHPREVPWP----RQAREMLSNISYTKVMKFETETDLLEELLKIINTADPDCLIGYD 560

Query: 664  ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
              GF  DVL+H+    +V  S WS++GRL+RS  P L KGR I             AGR 
Sbjct: 561  -CGFQFDVLMHKMTTLKV--SNWSRLGRLRRS-TPPLMKGRIILNQ--------VFAGRP 608

Query: 724  LCDTFLCSRDL-LREVSYSLTQLAKTQLNKDR---KEVGPHDVLKMFQTLESLMELIEYG 779
             CD  + +++L L+  SY L  L  + L K     KE+ P + +  + T + +  LI+  
Sbjct: 609  TCDIQVSAKELNLKLRSYDLQSLCVSVLKKKENECKEIKPSECISFYNTTDKIDNLIKIT 668

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+A   + ++F L+VLPL  Q+T I+GN+  +TL   RA+R EYLLLHAF +K+YI PD
Sbjct: 669  LTEALYILSIVFELNVLPLALQITCIAGNVISRTLTAGRAERNEYLLLHAFHSKQYITPD 728

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K        M K +++ G+                        + G++  AY GGLVLEP
Sbjct: 729  K------RNMKKGKNDEGIX-----------------------QSGRKKAAYTGGLVLEP 759

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--PDGLVPHLPSSKTT-GVLPELLK 956
            KKG YDK ILL+DFNSLYPSIIQEYN+CFTTV  +   D     LP S    GV+P  ++
Sbjct: 760  KKGFYDKLILLMDFNSLYPSIIQEYNLCFTTVPGAAYADSEDLSLPESHLKPGVIPTEIR 819

Query: 957  NLVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
             LV+ R  VK  MKT   +  LK+ Q +I+Q ALKLTANSMYGCLG S+ RFYAK LA L
Sbjct: 820  KLVESRGEVKKLMKTPNISPELKM-QYNIRQLALKLTANSMYGCLGASHCRFYAKGLAAL 878

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL+ T  LV+  LN EVIYGDTDSIMI + + D  +  ++  K+ QEVNK YK
Sbjct: 879  VTAKGREILQHTKSLVE-KLNYEVIYGDTDSIMICTNVLDYDEVFSVGKKIKQEVNKLYK 937

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             +E+D+DG+++ +LLL+KKKYAAV + +  +G      E KGLD+VRRDW  L+ +VG  
Sbjct: 938  RVELDIDGVFRYLLLLQKKKYAAVTMTKLPNGQIELTQELKGLDIVRRDWCQLACDVGKK 997

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L Q+LS+ S ED +E I + L  V   +R  QV+L   VITK L+K P  YPDAK Q H
Sbjct: 998  ILDQLLSDGSDEDRIEQIFSLLQDVAASVRENQVSLSSLVITKQLSKNPNDYPDAK-QAH 1056

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            VQVALRL + G      AGDTVPYIIC       G+     +RA H DE KK D    ID
Sbjct: 1057 VQVALRLNKEG-GRMWKAGDTVPYIIC-----DDGTEKSATERAYHIDEYKKSDS-LKID 1109

Query: 1253 IDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVG 1312
            ++YY   Q+ P+  R+C  I+G     LA  LGL+ + ++SK    +  D +   L    
Sbjct: 1110 VNYYLLSQVFPICLRICEPIQGIDDVLLAAHLGLE-NVYKSK--RRIHDDENEIPLLL-- 1164

Query: 1313 DEERYRGCEPLILSC--PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCP 1370
            +EER+R C PL  +C   +C S      V       V+E P+  +          C   P
Sbjct: 1165 NEERFRYCLPLKFNCRDENCQSEIIIKEV-------VTETPTGNQLSLASCSNPSCTLQP 1217

Query: 1371 EEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTV 1430
                       +I N +       ++ YY G + C+   C   T  L L           
Sbjct: 1218 WTYH------NVIQNAMTLAVREAITEYYDGWLECESPICGEQTQILPLGY--------- 1262

Query: 1431 CPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
               +P C    +GRL + +++  LY QL ++ HL+D  + 
Sbjct: 1263 -KKHPTCRECKDGRLHKMFSDTRLYNQLCFYLHLVDVSQS 1301


>gi|154305854|ref|XP_001553328.1| hypothetical protein BC1G_08158 [Botryotinia fuckeliana B05.10]
          Length = 1456

 Score =  631 bits (1627), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 430/1219 (35%), Positives = 636/1219 (52%), Gaps = 147/1219 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP-- 384
            +++DGSL  +  D  E       G L LFGKVK     T  SC V V N+ R ++ +P  
Sbjct: 342  IEEDGSLHMFWTDYTEM-----HGNLCLFGKVKNKKTGTFVSCFVKVDNVLRKLFFLPRQ 396

Query: 385  ----NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIV 440
                NG    TDE+                   +++DV      E+ + +  + V  + +
Sbjct: 397  YRQRNG-RDTTDEV-------------------EMKDVY----EEVDSMMTKMKVGMHKI 432

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK-GENFCSLLGTHSSALELFLVK 499
             P  R+YAF   EIP    Y LK+ YP+ +  L  D + G  F  + G ++   E F++ 
Sbjct: 433  KPCTRKYAFELPEIPKEGEY-LKLLYPYSNHALNVDQQTGSTFSHVFGANTPLFEQFVLW 491

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + + GP WL I   +   A +  S CK E+ V  P  I   S S ++ E PP+T+ +I +
Sbjct: 492  KNIMGPCWLKIED-ADFGALKNASHCKLEVQVTKPNLITPISDSDNL-EAPPLTLMSIAM 549

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMG 617
            +TVFN +++  E+++ S      A+I   +  S+   P  L    FTV+R  +G  FP+G
Sbjct: 550  RTVFNVKENKQEVLAIS------ARIYQNISLSDTTPPERLPCQTFTVMRP-NGSHFPIG 602

Query: 618  FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ 677
            F  E   +    G   L  + +E  +L+  +  L  +D DVLVGH + G D  +LL R Q
Sbjct: 603  F--EGVVKQRSIGLVKLVKQENE--ILSYFLARLDSVDPDVLVGHQLEGVDFSILLSRFQ 658

Query: 678  VCRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRD 733
              + P   WS+IGR++R + P    + G   F         + ++GRL+CD    +    
Sbjct: 659  ARKTPQ--WSRIGRMRRQQWPSSMGKMGGNFFAE------RTLMSGRLMCDLANDMGKST 710

Query: 734  LLREVSYSLTQLAKTQLN-KDRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMF 791
            + +  S++LT++    L+  +R+E+     LK + T  + LM+ I + E D +    L  
Sbjct: 711  MTKCTSWTLTEMCSLYLSGTNRREIDNEAALKTWATNKDGLMDYISHCEADTYFIAALAL 770

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +        
Sbjct: 771  KVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKAVF-------- 822

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
             +    VE+ N +E  N D               K+   Y GGLV EP+KGLYDK++L++
Sbjct: 823  -KGKQQVEEENADE-ENGDV--------------KKKDKYKGGLVFEPEKGLYDKFVLVM 866

Query: 912  DFNSLYPSIIQEYNICFTTVER----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            DFNSLYPSIIQEYNICFTTV+R    + +  VP +P  +  G+LP+L+  LV RRR VK+
Sbjct: 867  DFNSLYPSIIQEYNICFTTVDRLNLSNDEDRVPEVPKDQDQGILPKLIATLVSRRRQVKS 926

Query: 968  WMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST
Sbjct: 927  LMKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRST 986

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
             DL ++  +L+VIYGDTDS+MI++ +D+I  A A+     + VN  Y+ LEID+D +++R
Sbjct: 987  KDLAESK-SLQVIYGDTDSVMINANVDNIQDALAVGNDFKKSVNDLYRLLEIDIDNVFRR 1045

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            +LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    E 
Sbjct: 1046 ILLQAKKKYAAINLVQVDGKFIDKMEVKGLDMKRREYCNLSKEVSSQLLNEILSGDDSEA 1105

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            V+  IH+ L ++   MR G V ++KY I   L K P+ YP+A N P VQVALR    G  
Sbjct: 1106 VITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAPKDYPNADNMPQVQVALRELAKGKQ 1165

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                  D + YI+  E  TS  +    A+R+  P ++ K D     D+++Y  +QI P V
Sbjct: 1166 V--RKDDVIAYIVTGEGKTSENA----AKRSFTPQDVMKRDSGLKPDVEWYLYKQIFPPV 1219

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPL 1323
             RLCA+I GT   RLADCLGLD  K+    + +  ++ +    L   + D  R++    L
Sbjct: 1220 ERLCANISGTDTVRLADCLGLDARKYSINNNNSAGNNEAEIHPLESQIDDSVRFKDSTRL 1279

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
             L C SC + F    + +S            E    F    RC           +S   I
Sbjct: 1280 TLRCRSCKAMFGFEGILNST-----------ENCSPFGIICRC--------GTTLSTLSI 1320

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGR 1440
              Q++ Q       YY+G ++CDD+ C   T  +++   R +G   +G        C G+
Sbjct: 1321 MTQLEHQIRQETCKYYEGWLVCDDQACGNRTRQMSVYGHRCLG--PKGLA----QGCLGK 1374

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQ------RGIEKMEISAKIPLEKELNKIRPVVALAAS 1494
            +  +YTE  +Y QL YF  L D        RG EK  +SA      E N+++       S
Sbjct: 1375 MRYEYTEKMMYNQLLYFSSLFDVDKAKSNARGTEKELVSAL----AEHNRVK--FGTLKS 1428

Query: 1495 TVQRIRERCAYGWVKLNDI 1513
             V++  ++C   WV ++ +
Sbjct: 1429 VVEKYLDKCGRQWVAMDSL 1447



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 19 ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
          ASARA+  E L+ALR  G++  D+  Y +     +Y+ V E+ Y  +V R R +   F++
Sbjct: 5  ASARAKFAE-LRALRESGKKRLDT--YEVHQGEDLYEEVDEEGYKKVV-RNRLDQDDFVI 60

Query: 79 DDDGLGYGDEGQEEDW 94
          DD+G GY D+G+ EDW
Sbjct: 61 DDNGEGYADDGR-EDW 75


>gi|302509736|ref|XP_003016828.1| hypothetical protein ARB_05121 [Arthroderma benhamiae CBS 112371]
 gi|291180398|gb|EFE36183.1| hypothetical protein ARB_05121 [Arthroderma benhamiae CBS 112371]
          Length = 1467

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 443/1287 (34%), Positives = 655/1287 (50%), Gaps = 162/1287 (12%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG------LNCQ 323
            KVK EV +D        A+ +TE    +   + W +V+    VL+   +       L CQ
Sbjct: 290  KVKKEVYDDPMASSP--ARATTE----MINPSSWNDVTNKLNVLNSSVTDMQRFGKLTCQ 343

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVY 381
            E+   V++DGSL F+ LD  E       G+L LFGKVK  + ++  S  V V N+ R +Y
Sbjct: 344  EA---VEEDGSLRFFWLDYTEI-----NGSLCLFGKVKNKTNNNYVSAFVKVDNILRKLY 395

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P    +   +    E D E+                  +  E+ N +    V  + + 
Sbjct: 396  FLPREYKYIRGQTTSEEVDMED------------------VYGEVDNIMSRSKVEMHKIK 437

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P  R+YAF   +IP    Y LK+ YP+  P LP +LKGE F  + GT+++  E F++ + 
Sbjct: 438  PCTRKYAFELPDIPKEAEY-LKLMYPYTKPALPMELKGETFSHVFGTNTALFEQFVLWKN 496

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V +P +I +   S+ + E PP+T+ +++ +T
Sbjct: 497  IMGPCWLKIED-ADFTAVNGASWCKLECQVTNPAEISLVPDSEEI-ETPPLTLMSLSFRT 554

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  S+   P  L    F+V+R  +   +P+ F 
Sbjct: 555  QLNVKENKQEIIVAS------ARVYENLSLSDTTPPENLPCKTFSVMRPSNLS-YPLRFE 607

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             EA     K     +  E +E+ LL++ +    K+D DV++GH +   D +VLL R +  
Sbjct: 608  AEA-----KKQRGTVMLEKTEQFLLSKFLALFEKIDPDVIMGHQLQEVDFNVLLSRLKEK 662

Query: 680  RVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLR 736
            + P   W +IGRLKR E PK   KG   F           +AGRLLCD    +    +++
Sbjct: 663  KTPG--WHRIGRLKRGEWPKNFSKGSGFFSD------RQLLAGRLLCDVANDMGKSLMMK 714

Query: 737  EVSYSLTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHL 793
              S++LT++ +  L +   R+EV     LK + T  E LM  + + E D +    L+  L
Sbjct: 715  CQSWTLTEMCQLYLGEGDQRREVDTEAALKTWATSKEGLMNFLSHCEADTYFIAALVLKL 774

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+ +  + K+ +  
Sbjct: 775  QMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEFYRGKYICPDKYGHKTQIKIEE-- 832

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
             N G ED                         K+   Y GGLV EP+KGLYDK++L++DF
Sbjct: 833  -NEGEED---------------------GADKKKKEKYKGGLVFEPEKGLYDKHVLVMDF 870

Query: 914  NSLYPSIIQEYNICFTTVERSP------DGLVPHLPSS-KTTGVLPELLKNLVQRRRMVK 966
            NSLYPSIIQE+NICFTTV+R        +  VP +P S +  G+LP L+  LV RRR VK
Sbjct: 871  NSLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVK 930

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK  +A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR+
Sbjct: 931  KLMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRN 990

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L + N  L VIYGDTDS+MI++  D++ +A  +  +  + VN++Y+ LEID+D ++K
Sbjct: 991  TKELAETN-QLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFK 1049

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    E
Sbjct: 1050 RLLLHAKKKYAAINLSEVDGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEILSGDDVE 1109

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             V+  IH+ L ++ + M    + ++KYVI   L+K P+ YP+ +  P  QVALR    G 
Sbjct: 1110 VVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPDEYPNKETMPPAQVALRELARGK 1169

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S      D + YI+    G S  SS+  A+R+    ++ K D     D+++Y  +QI P 
Sbjct: 1170 SV--RPNDVISYIVTL--GDSETSSLQPAKRSYTLQDVIKPDSGLKPDVEFYLLKQIFPP 1225

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEP 1322
            + RLCA I GT   RLA+CLGLD  K+Q   + T     +   +L   + D  R+     
Sbjct: 1226 IERLCAPIPGTDAARLAECLGLDVRKYQISSNATHGQQETELCALESQIPDSIRFEKAAR 1285

Query: 1323 LILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK---CPEEVEAGR 1377
            L L C  C   STF+       +C                      P    CPE      
Sbjct: 1286 LNLQCRFCRKKSTFEGLVASRDMC---------------------SPNGLLCPEPSCGKA 1324

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNY 1434
             +   I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R       
Sbjct: 1325 FTVISIVAQLESQIRAQTAQYYEGWLVCDDSACGNRTRQMSVYGQRCLGPRGRAE----- 1379

Query: 1435 PRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAA- 1493
              C GR+  +Y+E  LY QL YF  L D ++     E  A +       K   ++AL A 
Sbjct: 1380 -GCLGRMHYEYSEKQLYNQLLYFAGLWDVEKAKGMAEKEASV------EKREAILALIAW 1432

Query: 1494 ---------STVQRIRERCAYGWVKLN 1511
                     S V    ++C   WV ++
Sbjct: 1433 NRTRFDTVKSVVDGYLKKCGRQWVDMD 1459



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           S+RA+ LE L+ALR  G++   +  Y I+ +  IY+ V E+ Y  +V R+R +   F+VD
Sbjct: 2   SSRAKKLEELRALRASGKKRLST--YEIQEDEDIYEQVDEEGYKKVV-RKRLDRDDFVVD 58

Query: 80  DDGLGYGDEGQEE--DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           D+G GY D+G+EE  D  +A   S SD   + G+ + +K+  + + K+E N  + K
Sbjct: 59  DNGEGYADDGREEWDDTRLAASDSDSDGLPVRGKAAKRKREEDNKKKEEINNGINK 114


>gi|358365785|dbj|GAA82407.1| DNA polymerase alpha catalytic subunit [Aspergillus kawachii IFO
            4308]
          Length = 1465

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 436/1265 (34%), Positives = 646/1265 (51%), Gaps = 145/1265 (11%)

Query: 290  STEKDPLLSATAGWKEVSGGNMVLDEGKSG-------LNCQESEFEVDDDGSLPFYILDA 342
            S+   P+    A W  V     VL    S        L  Q+    V+DDGSL  + LD 
Sbjct: 299  SSPTKPMPEVDASWNNVRSKLNVLSSPASSEMRSFGKLRAQDV---VEDDGSLRMFWLDF 355

Query: 343  HEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
             E       G+L LFGKVK     ++ S  V + N+ R +Y +P     +       E D
Sbjct: 356  TEV-----NGSLCLFGKVKNKQNGSYASAFVKIDNILRKLYFLPREYRHKNGRDTDEEVD 410

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
             E+                  +  E+   +  L V  + + P  R+YAF    +P    Y
Sbjct: 411  MED------------------VYHEVDGMMSRLKVGMHKMKPCTRKYAFELPGVPKETEY 452

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             LK+ YP+   PLP D+KGE F  + GT++S  E F++ + + GP WL I + +   A  
Sbjct: 453  -LKLFYPYDKSPLPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEE-ADFTAVN 510

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
              SWCK+E     P  I     S+++ E PP+T+ +++ +T  N +++  EI+ AS    
Sbjct: 511  NASWCKFECQAAKPALISPVPDSENL-EAPPLTLMSLSFRTQLNVKENKQEILVAS---- 565

Query: 581  HKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              A++   +  ++   P  L    FTV+R   G  +PM F  E     ++        E 
Sbjct: 566  --ARVYENVSLTDTTPPERLPCKSFTVMRPA-GSSYPMHFEAE-----TRKQRGTFMLEK 617

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE+ LL++ +    K+D DVL+GH +   DL +LL R +  + P   W ++GRLKR + P
Sbjct: 618  SEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLSRLREKKTPG--WHRLGRLKRGDWP 675

Query: 699  K-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQLNKD-- 753
            K   +G   F           IAGRL+CD    +    +++  S+SLT++    L K+  
Sbjct: 676  KNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQSWSLTEMCDLYLGKENS 729

Query: 754  RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            R+E+     LK + T  + LM  + + + D +    L+  L +LPLT+ LTNI+GN W +
Sbjct: 730  RQELDCEAALKTWATTKDGLMNFVNHCDADTYFIAALVLRLQMLPLTKVLTNIAGNSWAR 789

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G RA+R EY+LLH F   KYI PDK++    +K+ K            EE   E  +
Sbjct: 790  TLSGTRAERNEYILLHEFHRNKYICPDKYS----SKLLK-----------AEEKMQEGDD 834

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D+       +         GGLV EP+KGLYDK+IL++DFNSLYPSIIQEYNICFTTVE
Sbjct: 835  EDSADKKKKDKY-------KGGLVFEPEKGLYDKFILVMDFNSLYPSIIQEYNICFTTVE 887

Query: 933  RSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
            R+          VP +P+S +  G+LP+L+  LV RRR VK  MK   A+  ++   D +
Sbjct: 888  RTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREVKKLMKDKRATPEQLALWDTK 947

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++   L VIYGDTD
Sbjct: 948  QLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK-QLRVIYGDTD 1006

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI++ +D I+ A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +   D
Sbjct: 1007 SVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFRRLLLHAKKKYAAINMTEVD 1066

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G   + +E KGLDM RR++  LSKEV    L+++LS    E V+  +H+ L ++ E MR 
Sbjct: 1067 GKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQEVVLNRVHDYLRELAEKMRE 1126

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              V ++KYVI   L+K PE YP+ ++ P VQVALR    G +      D + Y++    G
Sbjct: 1127 YSVPVQKYVIYTKLSKRPEEYPNKESMPPVQVALRELARGKTV--RPNDVISYVVT--NG 1182

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             +  SS+  A+R+  P ++ K D     DI++Y  +QI P + RLCA I GT   RLA+C
Sbjct: 1183 DAETSSLAPAKRSYTPQDVMKPDSGLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLAEC 1242

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSC--SSTFDCP 1337
            LGLD  K+Q   S    S+  ++ +F     + D  R+       L+C  C   S F+  
Sbjct: 1243 LGLDVRKYQINSSS--GSNQQNADIFPLESQIPDSVRFENATRFTLTCRFCKEKSVFEGL 1300

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
            A  + +C                  T     CP +      S   I  Q++ Q     S 
Sbjct: 1301 AQSTHMC------------------TANGVVCPNQACQKTFSVLTIVAQLESQIRAQTSK 1342

Query: 1398 YYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQL 1454
            YY+G ++CDD  C   T  +++   R +G   RG    +   C GR+  +Y+E  +Y QL
Sbjct: 1343 YYEGWLVCDDTACGNRTRQISVYGHRCLG--PRG----HAEGCLGRMTYEYSEKQMYNQL 1396

Query: 1455 TYFCHLLDT---QRGIEKMEISAK---IPLEKELNKIRPVVALAASTVQRIRERCAYGWV 1508
             YF  L D    ++  EK     K   +    E N+IR         V    ++C   WV
Sbjct: 1397 LYFAGLWDVDKARKAAEKEPTGEKKDSVTALAEFNRIR--FGTIKGVVDAYLKKCGRQWV 1454

Query: 1509 KLNDI 1513
            +++ +
Sbjct: 1455 EMDSL 1459



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           SA    L  L+ALR  G++   +  Y ++ +  IY+ V ++ Y  ++ R R +   F+VD
Sbjct: 2   SASRAKLAELRALRAAGKKRLST--YEVEEQGDIYEEVDDEGYKKII-RNRLDQDDFVVD 58

Query: 80  DDGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN------ 130
           D+G GY D+G+E   E  +  G   S DD      ++ K++R E++ ++E   N      
Sbjct: 59  DNGEGYADDGREVWNERTADYGDSESEDDGLPARGKAAKRKREEEKQRQEKINNGISKYF 118

Query: 131 -------VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFA 183
                    KP P  TA         L  + T+    +      VK        +L   +
Sbjct: 119 SSGAAPSAPKPKPVATAEDDAFMADLLGEVDTNVVPHRVPTRNIVKTEARRKVRIL---S 175

Query: 184 PDEADRERRRRSV 196
           P  ADR RR + +
Sbjct: 176 PPLADRTRREKPI 188


>gi|212543673|ref|XP_002151991.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210066898|gb|EEA20991.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1464

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 431/1252 (34%), Positives = 637/1252 (50%), Gaps = 145/1252 (11%)

Query: 301  AGWKEVSGGNMVLDEGKS---GLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            A W  V+    VL    +   G     ++  +++DGS+ F+ LD  E       G+L LF
Sbjct: 313  ATWDNVTSKLNVLSSPATENIGFGKVRAQDVIEEDGSVQFFWLDYTEV-----NGSLCLF 367

Query: 358  GKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKVK   T  + S  V V N+ R ++ +P     +   +   E D E+            
Sbjct: 368  GKVKNKKTGSYVSSFVKVDNILRKLFFLPRENRVKNGHVTDEEVDMED------------ 415

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
                  +  E+   +  L V  + + P  R+YAF    IP   +Y LK+ YP+  P LP 
Sbjct: 416  ------VYEEVDGMMTKLKVGMHKIKPCTRKYAFELPNIPKEGDY-LKLLYPYDKPVLPM 468

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK 535
            D  GE F  + GT+++  E F++ + V GP WL I + +   A    SWCK+E  V  P 
Sbjct: 469  DTTGETFSHVFGTNTALFEQFVLWKHVMGPCWLKIGE-ADFSAATNASWCKFECQVSKPN 527

Query: 536  DIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWK 595
             I     S+   E PP+T+ +++ +T  N +++  EI+ AS        +  P      K
Sbjct: 528  TITTIPDSE--LETPPLTLMSLSFRTQLNVKENKQEILVASARIYENVSL--PETTPPEK 583

Query: 596  KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
             P     FTV+R   G  +P+G   E      K    V   E +E+ LL++ +    ++D
Sbjct: 584  MP--CKTFTVMRP-SGTSYPIGLEAEV-----KKQRGVYMLEKNEQFLLSKFLALFERMD 635

Query: 656  SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPG 714
             D+++GH +   DL +LL+R +  + P   WS++GRLKR+E PK   +G   F       
Sbjct: 636  PDIIMGHQLQEVDLGILLNRMKEKKTPG--WSRVGRLKRTEWPKNFNRGGGFFAD----- 688

Query: 715  IMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQ 767
                IAGR++CD    + D+ + +     S++LT++ +  L+ D  R E+     LK + 
Sbjct: 689  -RHLIAGRMMCD---LANDMGKSLMVKCQSWTLTEMCQLYLSDDHIRSELDNEAALKTWA 744

Query: 768  TL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            T  E L++ + + E D +    L+  L +L LT+ LTN++GN W +TL G RA+R EY+L
Sbjct: 745  TTKEGLLKYVTHCEADTYFISALVIRLQMLSLTKVLTNLAGNSWARTLTGTRAERNEYIL 804

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH F   KYI PDK++                 +R ++ L       +     +D    K
Sbjct: 805  LHEFHRNKYICPDKYS-----------------NRQLKALE------EKVDDDDDSTDKK 841

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG------LVP 940
            +   Y GGLV EP+KGLYD+Y+L++DFNSLYPSIIQE+NICFTTV+RS          VP
Sbjct: 842  KKEKYKGGLVFEPEKGLYDRYVLVMDFNSLYPSIIQEFNICFTTVDRSSTAENENEEQVP 901

Query: 941  HLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGC 997
             +PSS +  G+LP L+ NLV RRR VK  MK   A+  ++   D +Q ALKLTANSMYGC
Sbjct: 902  EVPSSDQEQGILPRLIANLVTRRREVKKLMKDKRATTEQLALWDTKQMALKLTANSMYGC 961

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            LG++ SRFYA+PLA L T +GREILRST DL ++   L VIYGDTDS+MI++ +D I+ A
Sbjct: 962  LGYTQSRFYARPLAMLTTFKGREILRSTKDLAESK-QLRVIYGDTDSVMINTNMDTISDA 1020

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
              +  +    VN++YK LEID+D +++R+LL  KKKYAA+ +   DG   + +E KGLDM
Sbjct: 1021 LKVGEEFKASVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEIDGKYVDKLEVKGLDM 1080

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
             RR++  LSKEV    L +ILS    E V+  +H+ L  V   M+  ++ ++KYVI   L
Sbjct: 1081 KRREYCALSKEVSKRLLDEILSGEDSEVVLNKVHDYLRDVTAQMKEYKIPVQKYVIYTKL 1140

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            +K PE YP+ ++ P  QVALR    G +      D + YI+    G S  +++   +R+ 
Sbjct: 1141 SKRPEEYPNKESMPPAQVALREIARGKT--IRPNDVIAYIVT--SGDSETANLPPPKRSY 1196

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE 1297
               ++ K D +   DI+YY  +QI P + RLCA I GT P R+A+CLGLD  K+Q   S 
Sbjct: 1197 TLQDVMKPDSELKPDIEYYLLKQIFPPIERLCAPIPGTDPVRIAECLGLDVRKYQINTSR 1256

Query: 1298 TMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSC--SSTFD----CPAVCSSICMSVSE 1349
            + S   +    L   + D  R+     L L C  C  SS F+     P +CS   +    
Sbjct: 1257 SNSQQDAKIYPLESQIPDSIRFEHSARLSLRCRHCGESSVFEGLSSSPRMCSPHGVV--- 1313

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
                               CP E  A   S   I  QV+ Q     + YY+G ++CDD +
Sbjct: 1314 -------------------CPNEACANVFSTISIVAQVESQIRAQTAKYYEGWLVCDDSS 1354

Query: 1410 CKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR- 1465
            C   T  +++   R +G   R         C GR+  +YTE  +Y QL YF  L D  + 
Sbjct: 1355 CGNRTRQMSVYGHRCLGPRGRAE------GCLGRMNYEYTEKQMYNQLLYFAGLWDVDKA 1408

Query: 1466 ----GIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                  E  +    I    E N+ R   A     V    ++C   WV+++ +
Sbjct: 1409 KSVAAKEASDAKDNIHALAEYNRAR--FATVKGVVDGYLKKCGRQWVEMDTL 1458



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  LKALR  G++   +  Y ++ +  IYD V E+ Y  +V R+R +   F+V
Sbjct: 3   ATARAK-LAELKALRASGKKRLST--YEVEDQGSIYDEVDEEGYKKVV-RKRLDEDDFVV 58

Query: 79  DDDGLGYGDEGQE---EDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           DD+G GY D+G+E   ED          DD    G+ + +K+  EK+ K++ N  + K
Sbjct: 59  DDNGEGYADDGREVWNEDRVEYSDSEEDDDLPARGKAAKRKREQEKQRKEKINNGISK 116


>gi|156048094|ref|XP_001590014.1| hypothetical protein SS1G_08778 [Sclerotinia sclerotiorum 1980]
 gi|154693175|gb|EDN92913.1| hypothetical protein SS1G_08778 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1458

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 428/1219 (35%), Positives = 638/1219 (52%), Gaps = 147/1219 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNG 386
            +++DGSL  +  D  E       G+L LFGKVK   T +  SC + V N+ R ++ +P  
Sbjct: 344  IEEDGSLHMFWTDYTEI-----NGSLCLFGKVKNKKTGNFFSCFLKVDNILRKLFFLPRQ 398

Query: 387  PLFQ-----TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
               +     TDE+                    ++DV      E+ + +  +NV  + + 
Sbjct: 399  YRKRHGRDTTDEV-------------------DMKDVY----EEVDDMMTKMNVGMHKIK 435

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK-GENFCSLLGTHSSALELFLVKR 500
            P  R+YAF   +IP    Y LK+ YP+    L AD   G  F  + G+++   E F++ +
Sbjct: 436  PCTRKYAFELPDIPKEGEY-LKLLYPYSKSALHADQHSGSTFSHVFGSNTPLFEQFVLWK 494

Query: 501  KVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
             + GP WL I   +   A +  S CK E+ V  P  I   + S ++ E PP+T+ +I L+
Sbjct: 495  NIMGPCWLKIED-ADFGALKNASHCKLEVQVSKPNLITPINDSDNL-EAPPLTLMSIALR 552

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGF 618
            TVFN +++  EI++ S      A+I   +  S+   P  L    FTV+R  +G  FP+GF
Sbjct: 553  TVFNVKENKQEILAIS------ARIYQNISLSDTTPPENLPCQTFTVMRP-NGSHFPIGF 605

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
              E T +    G   L  + +E  +L+  +  L  +D DVLVGH + G D  +LL R Q 
Sbjct: 606  --EGTVKQRSIGLVKLVKQENE--ILSFFLARLDLVDPDVLVGHQLEGVDFSILLSRFQA 661

Query: 679  CRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDL 734
             + P   WS+IGR++ ++ P    + G   F         + ++GRL+CD    +    +
Sbjct: 662  RKTPQ--WSRIGRMRHTQWPGSMGKMGGNFFAE------RTLMSGRLMCDLANDMGKSTM 713

Query: 735  LREVSYSLTQLAKTQLN-KDRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFH 792
             +  S++LT++    L+  +R+E+     LK + T  + LM+ + + E D +    L   
Sbjct: 714  TKCTSWTLTEMCSLYLSGANRREIDNEVALKTWATNKDGLMDYVSHCEADTYFIAALALK 773

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +         
Sbjct: 774  VQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKAVF--------- 824

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            +    VE+ N +E + +                K+   Y GGLV EP+KGLYDK++L++D
Sbjct: 825  KGKQQVEEENADEESGD---------------VKKKDKYKGGLVFEPEKGLYDKFVLVMD 869

Query: 913  FNSLYPSIIQEYNICFTTVER----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            FNSLYPSIIQE+NICFTTV+R      +  VP +P+ +  G+LP+L+  LV RRR VK+ 
Sbjct: 870  FNSLYPSIIQEFNICFTTVDRLNLSDDEDRVPEVPTDQEQGILPKLIATLVSRRRQVKSL 929

Query: 969  MKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 930  MKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTK 989

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL ++  +L+VIYGDTDS+MI++ +D+I  A A+     + VN +YK LEID+D +++R+
Sbjct: 990  DLAESK-SLQVIYGDTDSVMINANVDNIQDALAVGNDFKRSVNDRYKLLEIDIDNVFRRI 1048

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    E V
Sbjct: 1049 LLQAKKKYAAINLVQVDGKFVDKMEVKGLDMKRREYCNLSKEVSSQLLNEILSGDDSEAV 1108

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  IH+ L ++   MR G V ++KY I   L K P+ YP+A N P VQVALR    G   
Sbjct: 1109 ITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAPKDYPNADNMPQVQVALRELAKGKQV 1168

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + YI+  E  TS  +    A+R+  P ++ K D     D+++Y  +QI P V 
Sbjct: 1169 --RKDDVIAYIVTGEGKTSENA----AKRSFTPQDVMKRDSDLKPDVEWYLYKQIFPPVE 1222

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLI 1324
            RLCA+I GT   RLADCLGLD  K+    + +  S+ +    L   + D  R++    L 
Sbjct: 1223 RLCANISGTDTVRLADCLGLDARKYSINNNNSSGSNEAEIHPLESQIDDSVRFKDSSRLT 1282

Query: 1325 LSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRI-SPGMI 1383
            L C SC +TF    + +S                    T  C         G I S   I
Sbjct: 1283 LRCRSCKATFGFEGLLNS--------------------TENCSPSGIICRCGNILSTLSI 1322

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGR 1440
              Q++ Q       YY+G ++CDD+ C   T  +++   R +G   +G        C G+
Sbjct: 1323 MTQLEHQIRQETCKYYEGWLVCDDQACGNRTRQMSVYGYRCLG--PKGLA----QGCLGK 1376

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQ------RGIEKMEISAKIPLEKELNKIRPVVALAAS 1494
            +  +YTE  +Y QL YF  L D        RG EK  +SA      E N++R       +
Sbjct: 1377 MRYEYTEKMMYNQLLYFASLFDVDKAKANARGTEKEIVSAL----AEHNRVR--FGTLKN 1430

Query: 1495 TVQRIRERCAYGWVKLNDI 1513
             V +  ++C   WV ++ +
Sbjct: 1431 VVDKYLDKCGRQWVAMDSL 1449



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 19 ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
          ASARA+  E L+ALR  G++  D+  Y +  E  +Y+ V E+ Y  +V R R     F++
Sbjct: 5  ASARAKFAE-LRALRESGKKRLDT--YEVHQEEDLYEEVDEEGYKKVV-RNRLNQDDFVI 60

Query: 79 DDDGLGYGDEGQEEDW 94
          DD+G GY D+G+ EDW
Sbjct: 61 DDNGEGYADDGR-EDW 75


>gi|259479896|tpe|CBF70539.1| TPA: catalytic subunit of the DNA polymerase alpha-primase complex
            (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1459

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 506/1567 (32%), Positives = 769/1567 (49%), Gaps = 191/1567 (12%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++   +  Y ++ +  IY+ V +D Y  ++ R R +   F+V
Sbjct: 2    ASARAK-LAELRALRAAGKKRLST--YEVEEQGDIYEEVDDDGYKKII-RNRLDEDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W+         SDD+ L  + ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRR 194
              S   AAA   K +  A     A      D   +   +V+   + +    +++  R+ R
Sbjct: 117  FSS--GAAAPTPKPKPVATAEDDAFL---ADLLGEVDNNVVSNTVPKHNVVKSETRRKVR 171

Query: 195  SVSSNI--KSFVSVNSVK-TNSQLVT-----------NSTNSVKENSDL----------I 230
             +S  +  K+  S  ++K  NS  V            N    +  N D+          +
Sbjct: 172  ILSPPLSEKTRTSKPAIKDENSGPVPPVAEEPVLDMDNGDGPLDTNDDIPMSDTMPSSPV 231

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKE-KVKDEVNEDVKECKKLNAKI 289
               V+ ++  +++E  E   + DN  E+ +     E K   V    +    + KK     
Sbjct: 232  TKAVERKSAVLIKEEPED--DDDNMMEVVQATGHDEAKAPSVNISGSRPPPKIKKQPYAT 289

Query: 290  STEKDPLLSAT---AGWKEVSGGNMVLDEGKSGLNCQESEFEVDD----DGSLPFYILDA 342
                 P+ SA    A W +V     VL+   S       +    D    DGSL F+ LD 
Sbjct: 290  PASSSPVKSAADVNASWNDVRNKLNVLNSPASTETRAFGKLRPQDVAEQDGSLRFFWLDY 349

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
             E       G+L LFGKV  K   ++ S  V V ++ R +Y +P     +       E D
Sbjct: 350  TEV-----NGSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRETDEEVD 404

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
             E+                  +  E+   +  L V  + +    R+YAF    IP    Y
Sbjct: 405  MED------------------VYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEY 446

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             LK+ YP+  P LP D KGE F  + GT++S  E F++ + + GP WL I + +   A  
Sbjct: 447  -LKLLYPYDKPALPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEE-ADFSAVN 504

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
              SWCK+E     P  I     S+++ + P +T+ ++  +T  N +++  EI+ AS    
Sbjct: 505  NASWCKFECQTSKPGLISPVPDSENL-DPPTLTLISLAFRTQLNVKENKQEILVAS---- 559

Query: 581  HKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              A++   +  +E   P  L    FTV+R   G  +P+ F  E      + G+ +L  E 
Sbjct: 560  --ARVYENISLTETTPPEKLPCKTFTVMRPA-GSSYPVNFEAEI---RKQRGTYML--EK 611

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE+ LL++ +    ++D DVL+GH +   DL +LL R +  + P   W ++GRLKR E P
Sbjct: 612  SEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGEWP 669

Query: 699  K-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQL--NKD 753
            K   KG   F           +AGRL+CD    +    +++  S+SLT++    L     
Sbjct: 670  KNFNKGGGFFTE------RHLVAGRLVCDVANDMGKSLMMKCQSWSLTEMCDLYLGSGNG 723

Query: 754  RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            R+++     LK + T  + L+  + + +TD +    L+  L +L LT+ LTNI+GN W +
Sbjct: 724  RQDLDIDAALKTWATSKDGLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWAR 783

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G RA+R EY+LLH F   KYI PDK++    +K+ K            EE+  E   
Sbjct: 784  TLSGTRAERNEYILLHEFYKNKYICPDKYS----SKLQK-----------AEEIAQEGDE 828

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D        +         GGLV EP++GLYD+Y+L++DFNSLYPSIIQEYNICFTTV+
Sbjct: 829  DDATDKKKKDKY-------KGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVD 881

Query: 933  RSP------DGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
            R+       D  VP +P+S    G+LP L+  LV RRR VK  MK   A+  ++   D +
Sbjct: 882  RTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTK 941

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +LV++   L VIYGDTD
Sbjct: 942  QLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK-QLRVIYGDTD 1000

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI++ +D I+ A  +  ++   VN++YK LEID+D +++R+LL  KKKYAA+ +   D
Sbjct: 1001 SVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEVD 1060

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G   + +E KGLDM RR++  LSKE     L++ILS    E V+  +H+ L ++  +MR 
Sbjct: 1061 GKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMRE 1120

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              + ++KYVI   L+K PE YP+ +  P  QVALR    G +      D + YI+    G
Sbjct: 1121 YTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKTV--RPNDVISYIVT--SG 1176

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             S  SS+  A+R+    ++ K D +   DI++Y  +QI P + RLCA I GT   RLA+C
Sbjct: 1177 DSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLAEC 1236

Query: 1284 LGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSCS--STFDCPAV 1339
            LGLD  K+Q   + T S+  +    L   + D  R+     L L+C  C   S F+  A 
Sbjct: 1237 LGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGLAA 1296

Query: 1340 CSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
               +C        KP   +          CP       IS   I  Q++ Q     S YY
Sbjct: 1297 SIHMC--------KPTGLF----------CPNSSCGNPISTLTIIAQLESQIRAQTSKYY 1338

Query: 1400 KGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
            +G ++CD+ TC   T  +++   R +G   RG        C GR+  +Y+E  +Y QL Y
Sbjct: 1339 EGWLVCDESTCGNRTRQISVYGHRCLG--PRGQA----EGCLGRMAYEYSEKQMYNQLLY 1392

Query: 1457 FCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIR------------ERCA 1504
            F  L D  +        A+   EKE N+ +     A     R+R            ++C 
Sbjct: 1393 FASLWDVDK--------ARAAAEKESNEEKKDSIAALVEFNRVRFGTIKGVVDAYLKKCG 1444

Query: 1505 YGWVKLN 1511
              WV+++
Sbjct: 1445 RQWVEMD 1451


>gi|453082971|gb|EMF11017.1| DNA polymerase alpha catalytic subunit [Mycosphaerella populorum
            SO2202]
          Length = 1468

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 428/1213 (35%), Positives = 628/1213 (51%), Gaps = 110/1213 (9%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++DDGSL F+  D  E       G+L LFGKVK   T  + SC V V N+ R +Y +P  
Sbjct: 332  LEDDGSLNFFWFDYTEV-----NGSLCLFGKVKNRQTGSYVSCFVKVDNILRKLYFLPR- 385

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN-VSNYIVSPVKR 445
                 +   K  +D  +             +V      E  +Q+++ + V+ + +    R
Sbjct: 386  -----EHRHKHGRDTGD-------------EVGFADVYEEVDQIMSKHKVTMHKIKQCTR 427

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            +YAF    IP   +Y LK+ YP+   PLP D +GE F  + GT+++  E F++ + + GP
Sbjct: 428  KYAFELPGIPKEADY-LKLLYPYDKSPLPMDYQGETFSHIFGTNTALFEQFVMWKNIMGP 486

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL I   +   A    SWCK E+ V  P  I     + ++ E PP+T+ ++ L+TVFN 
Sbjct: 487  CWLKIEG-ADFNAVSNASWCKLELQVTKPNGITTLGEADNL-EAPPLTMMSMALRTVFNP 544

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            + + NEI+ ASV       +     A +     M      + + +G  +PMGF       
Sbjct: 545  KDNKNEILVASVRFFENMSLTDTKPAEQ-----MPQRMITIMRPNGDAYPMGFKPLVEKE 599

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
              +     +  E +E  LL++L+  +   D D +VGH +   D +VLL R +  + P   
Sbjct: 600  KHR-----IHMERNEIGLLSKLLAIIQMHDPDCIVGHKLDDVDFNVLLTRMRERKTPG-- 652

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SY 740
            W +IGRLKR + PK   GR   G+G+        AGRLL D    + D+ + +     S+
Sbjct: 653  WHRIGRLKRGDWPK-NVGR---GAGSYFAERHLAAGRLLGD---LANDMGKSIMQGCQSW 705

Query: 741  SLTQLAKTQL-NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            SL ++    L    RKE+     L M Q+   LM  ++  E D + +  L     +LPLT
Sbjct: 706  SLDEMVSLHLPGHSRKEMDSEKALSMAQSGVGLMNYVKMCEIDTFYTAALAIKQQLLPLT 765

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            + LTN++GN W +TL G R++R EY+LLH F   KYI PDK  Y K           G  
Sbjct: 766  KVLTNLAGNSWARTLSGTRSERNEYILLHEFYRNKYICPDKI-YGK-----------GPS 813

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            ++ +EE    +   D+          K+   Y GGLV EP+KGLYDK+IL++DFNSLYPS
Sbjct: 814  NKRIEEAEEGEEGADS----------KKKDKYKGGLVFEPEKGLYDKFILVMDFNSLYPS 863

Query: 920  IIQEYNICFTTVERS----PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASG 974
            IIQEYNICFTTV+RS     D  VP +P   +  G+LP L++ LV RRR VK  MK  S 
Sbjct: 864  IIQEYNICFTTVDRSDISEQDERVPDVPEDTSNKGILPRLIRTLVSRRREVKKLMKDKSA 923

Query: 975  LK--IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
             +  ++  D++Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL+ST +L ++ 
Sbjct: 924  TEDMLKTWDVKQMALKLTANSMYGCLGYTKSRFYARPLAALTTSKGREILQSTKNLAESQ 983

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
              L VIYGDTDS+MI++ +D+I  A  +     + VN++Y+ LEI++D +++R+LL  KK
Sbjct: 984  HALRVIYGDTDSVMINTNVDNILDALKMGKDFQRSVNEQYELLEIEIDHIFRRLLLHAKK 1043

Query: 1093 KYAAVK-VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KYAA++ +   D    E ++ KGLDM RR++  LSK+     L+ +LS    E VV  IH
Sbjct: 1044 KYAAIQMIDAGDNTWKEKLDVKGLDMRRREYCQLSKDTSTQLLNYLLSGEEPEKVVSQIH 1103

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
            + L  + E MR+ ++   KY I   L K P+ YP+ ++ P VQVAL+    G      A 
Sbjct: 1104 DHLRSLSEKMRNNEIPAHKYTIYTQLGKDPKDYPNGRSMPSVQVALKRLAKGKQV--KAK 1161

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D + ++IC   G S G+    AQ A   D +   + +   D+ YY  +QI P V RLCA 
Sbjct: 1162 DVMAFVIC---GDSEGNQEKAAQNAYELDAVLAKNSELTPDVQYYLHKQILPPVERLCAP 1218

Query: 1272 IEGTSPERLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS 1329
            I GT   RLA+CLGLD +K++       T  S+  ++L   + D  R++ CEPL L C  
Sbjct: 1219 ISGTDISRLAECLGLDTTKYRISGASKSTEQSNEITTLESQIPDHLRFKDCEPLGLLCLG 1278

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKR 1389
            C + F+   +  +      E P  P        T     CP      RIS   +  Q++ 
Sbjct: 1279 CKNHFEYRGL--NYMPPDGEAPLVPLGVL----TNDGLACPRAECKKRISTLTMTTQLET 1332

Query: 1390 QADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEAD 1449
            Q     S YY   + CDD+ C   T  ++  + G    G     Y  C GR+  +Y+E  
Sbjct: 1333 QIRRHTSRYYSAWLKCDDQACGLRTRQIS--VYGHRCLGPQGLAY-GCAGRMSFEYSEKA 1389

Query: 1450 LYKQLTYFCHLLDTQRGIEKME-ISAKIPLE---KELNKI-----RPVVALAASTVQRIR 1500
            LY QL Y   L D  + +EKM   S  + L+   KE  KI     R   A+    V+   
Sbjct: 1390 LYNQLLYLQGLFDVDKSLEKMSAASGLVKLDGESKEKAKILAGMNRDRFAVCWDVVKAYL 1449

Query: 1501 ERCAYGWVKLNDI 1513
            ++  +GWV ++ +
Sbjct: 1450 DKSGWGWVSMDSL 1462



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 7/103 (6%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A +RA+ L +L+ALR+ GR + D   Y ++    IY+TV ++ Y  +V R R +   F+V
Sbjct: 2   APSRADRLAQLRALRKAGRTAFDD--YEVEEAESIYETVDDEGYKKVV-RDRLDRDDFVV 58

Query: 79  DDDGLGYGDEGQEEDWSVAGLP---SSSDDESLDGQRSIKKQR 118
           DD+G GY D+G+ EDW     P   S S+++     ++ K++R
Sbjct: 59  DDNGEGYADDGR-EDWQNERQPMYDSESEEDLPKNSKAAKRKR 100


>gi|328782070|ref|XP_001121438.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Apis
            mellifera]
          Length = 1370

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 501/1542 (32%), Positives = 759/1542 (49%), Gaps = 225/1542 (14%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNI-KLENPIYDTVAE 59
            M D Q   +GR + +  + + R  ALE+LK L+      G    Y I KLEN +Y+ V E
Sbjct: 1    MSDTQ---SGRTKRQKIDKTGRLSALEKLKQLK------GSKNKYEIDKLEN-VYEEVDE 50

Query: 60   DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRI 119
             EY   V  R+ +   +I+DD   GY ++G+E            DDES+   R   K +I
Sbjct: 51   KEYTKTVIERQSD--DWIIDDGESGYIEDGRE------IFDDDLDDESIQEAR---KHKI 99

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
                            P       +  K  +  ML + +  KK  D K+ + ++++ +++
Sbjct: 100  T--------------GPKKNKKDNIKIKGNIQNMLMNMSS-KKKYDAKL-DDDNILGDLM 143

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQ-IQN 238
            +E   D +    + R+         +V S ++NSQ++ +   +   N+ L  +  Q I+N
Sbjct: 144  SELKKDNSPEMSKLRTHIKLNCQMENVISDQSNSQIIIDDEITSASNTTLDIHLKQDIKN 203

Query: 239  CDVVEESKELKWESDNSTELTKRDNFVEVKEKVKD-EVNEDVKECKKLNAKISTEKDPLL 297
                  S+ ++ E+++ ++    D ++E   ++ + EV        +L         PLL
Sbjct: 204  S---SNSQIIETENEDLSQFIG-DFYIEFTTQISNIEVTTTNTNTTELPL-------PLL 252

Query: 298  SATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            +                              V+ +    FY  DA+E       G +YL 
Sbjct: 253  T-----------------------------NVNKEEVFRFYWWDAYED-PYKQPGVVYLL 282

Query: 358  GKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKV   S   + SCC+ VKN+ R +Y +P   +  +      + + EE +++ M      
Sbjct: 283  GKVFVPSIKEYCSCCLTVKNIPRRIYLLPRVYIKTS-----FKDNNEEEQLNTM------ 331

Query: 416  QDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP 474
            +DV         NQ  N L +  +  S V + YAF Q   PA  +Y L++ Y    PP+P
Sbjct: 332  EDVYKEF-----NQFANKLGIKEFRSSKVSKHYAFEQEGTPAISDY-LEVRYAAHYPPMP 385

Query: 475  ADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV--SWCKYEITVD 532
            +D  G +   + GT  +ALEL L++R +KGP WL I     CP P  +  SWCK ++   
Sbjct: 386  SDYSGPSIERVFGTTVNALELLLIERNIKGPCWLEIK----CPLPSNIQTSWCKIKVNCM 441

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
              ++I V S       +PP+ +T +N++T  N +   NEIV  +++  HK  ID      
Sbjct: 442  KMENISVFS---EFQTLPPLVITTLNIRTSLNVKLQQNEIVMVAILIHHKYHID-----K 493

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
            E  KP    HF ++       +P    ++A +  S      +    +E  LL  L+  + 
Sbjct: 494  EPPKPPFQQHFCLITHPHDVPWP----RQAREMLSNISYTKVMKFETETDLLEELLKIIN 549

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
              D D+L+G++  GF  D+L+HR    +V  S WS++GRL+RS  P L +G+        
Sbjct: 550  SADPDLLIGYD-CGFQFDILMHRMITLKV--SNWSRLGRLRRS-TPPLIRGKI------- 598

Query: 713  PGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKDR---KEVGPHDVLKMFQT 768
              +   +AGR +CD  + +++L L+  SY L  L  + L K     KE+ P +    + T
Sbjct: 599  -NLNQVLAGRPICDIQVSAKELNLKVRSYDLQSLCTSVLKKKENECKEIKPGECAAFYDT 657

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
               +  LI+   T+A   + ++F L++LPL  Q+T+I+GN+  +TL   RA+R EYLLLH
Sbjct: 658  SNKIDNLIKITLTEALYILSIVFDLNILPLALQITSIAGNVISRTLTAGRAERNEYLLLH 717

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            AF  K YI PDK        M K + N GV                           ++ 
Sbjct: 718  AFHLKNYITPDKRI------MKKGKDNEGV--------------------------TRKK 745

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP---SS 945
             AY GGLVLEPKKG YDK ILL+DFNSLYPSIIQEYN+CFTTV  +      +L    S+
Sbjct: 746  AAYTGGLVLEPKKGFYDKLILLMDFNSLYPSIIQEYNLCFTTVPGAAYADYGNLSIPESN 805

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSR 1004
              +GV+P  ++ LV+ R  VK  MKT    +++ Q +I+Q ALKLTANSMYGCLG ++ R
Sbjct: 806  LESGVIPTEIRKLVESRGEVKKLMKTTISPELKMQYNIRQLALKLTANSMYGCLGATHCR 865

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
            FYAK LA ++T +GREIL+ T  LV+  LN EVIYGDTDSIMI++ + D  +  ++  K+
Sbjct: 866  FYAKGLAAMVTAKGREILQHTKSLVE-KLNYEVIYGDTDSIMINTNLLDYEEVFSVGKKI 924

Query: 1065 IQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV-KVQFKDGMPYEVIERKGLDMVRRDWS 1123
             QEVNK YK +E+D+DG+++ +LLL+KKKYAAV   +  +G      E KGLD+VRRDW 
Sbjct: 925  KQEVNKLYKRVELDIDGVFRYLLLLQKKKYAAVIMTKLPNGQIELTQEHKGLDIVRRDWC 984

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L+ + G   L  +LS + CED +E I   L  V +++R  Q++L   VITK L+K P  
Sbjct: 985  QLACDTGKKILDHLLSNQPCEDRIEQIFMILHDVAQNVRENQISLSSLVITKQLSKNPNE 1044

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            YPD K Q HVQVALRL + G       GDTVPYIIC       G+     +RA H DE K
Sbjct: 1045 YPDTK-QAHVQVALRLNKEG-GRMWKTGDTVPYIIC-----DDGTEKSATERAYHIDEYK 1097

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDP 1303
            K D    ID++YY   QI P+V R+C  IEG     LA CLG+D + ++SK    M  + 
Sbjct: 1098 KNDF-LKIDVNYYLLNQIFPIVLRICDPIEGFDDVLLAKCLGVD-NIYKSK---RMIHEE 1152

Query: 1304 SSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPAVCSSICMSVSEKPSKPETEYNFW 1361
             S +   + DE++++ C PL  +C    C S      +  +I +  S          N  
Sbjct: 1153 YSDI--PLTDEDKFKYCLPLKFNCKDEKCQSEI----ILKNIIIETSTG--------NQL 1198

Query: 1362 RTLRC--PKCPEEVEAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
                C  P C       +I P     +I N +       VS YY+G + C++  C   T 
Sbjct: 1199 SLASCSNPDC-------KIPPWTYVHIIQNAMTLAVRKAVSEYYEGWLECENPICGKQTQ 1251

Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
             L L   G       C    + N  L  K+T+  LY Q+ ++ HL +  +   K  + ++
Sbjct: 1252 ILPL---GFDSTYPTCXXXXKINYYL--KFTDTKLYNQMYFYFHLFNVSQSKYK-NLLSQ 1305

Query: 1476 IPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
             P       +R        T++++  R A+  V L+ I +++
Sbjct: 1306 YP-----QGMREAYDSLKETMEKMLRRNAFSVVCLDTIFLNI 1342


>gi|336469269|gb|EGO57431.1| hypothetical protein NEUTE1DRAFT_146042 [Neurospora tetrasperma FGSC
            2508]
 gi|350291097|gb|EGZ72311.1| hypothetical protein NEUTE2DRAFT_90453 [Neurospora tetrasperma FGSC
            2509]
          Length = 1479

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 425/1260 (33%), Positives = 664/1260 (52%), Gaps = 149/1260 (11%)

Query: 301  AGWKEVSGG-NMVLDEGKSGLNCQESEFE--VDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            A W E++   N+V      G +  + +++  +++DGSL  +  D  E       G+L LF
Sbjct: 313  ASWNEINQKLNVVSMSQSEGRSVGKIDYKDAIEEDGSLNMFWTDYTEV-----NGSLCLF 367

Query: 358  GKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKV  K   T+ SC V V N+ R ++ +P     +  E    E +  +            
Sbjct: 368  GKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGEETTEEVEMMD------------ 415

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
                  +  E+   +  +NV  + +    R+YAF   ++P    Y LK+ YP+  P +  
Sbjct: 416  ------VYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKESQY-LKLFYPYTKPAMEP 468

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDS 533
              KGE F  + GT+++  E F++ + + GP WL I  + F+S    +  S CK E+ V+ 
Sbjct: 469  THKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTSL---RNASHCKLEVLVEH 525

Query: 534  PKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
            P  + V  +++ + E PP+T+ ++ ++T FN + +  EI++ S       ++   +  S+
Sbjct: 526  PNMVSVPDNAESI-EPPPLTLLSLAMRTAFNPKDNKQEILAVS------GRVYFDVSLSD 578

Query: 594  WKKPGMLSH--FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
               P  L+   FT VR   G  FP+GF   A +RN      VL     E  +LN L+ ++
Sbjct: 579  TTPPDKLASRSFTAVRPY-GSAFPIGFETLAKERNR----GVLKLFKQEHEILNFLLAQI 633

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGS 709
              +D DV++GH + G D  +LL+R    +  +  WS++GRL+RS+ P   ++ G  +F  
Sbjct: 634  DVVDPDVILGHQLEGVDYSILLNRLHEKK--THQWSRLGRLRRSQWPSSIVKMGGNVF-- 689

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKEVGPHDV 762
             A   IMS   GRLLCD    + D  + V     ++SLT++    L  +  R+++     
Sbjct: 690  -AERQIMS---GRLLCD---LANDAGKSVMTKCQTWSLTEMCSLYLGGESRRRDIDNEVA 742

Query: 763  LKMFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            LK +   +   LM+ I + ETD +    L     +LPLT+ LTN++GN W +TL G RA+
Sbjct: 743  LKTWANADKHGLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAE 802

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            R EY+LLH F   KY+VPDK T+    ++ ++ +     +   ++   +           
Sbjct: 803  RNEYILLHEFHRNKYVVPDKQTFKGRQRIEEENAEEEGGEGGKKKDKYKGG--------- 853

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----D 936
                          LV EP+KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R+     D
Sbjct: 854  --------------LVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTSLSEDD 899

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSM 994
              VP +P  +  G+LP+L+  LV RRR VK+ MK   A+  ++   DI+Q ALKLTANSM
Sbjct: 900  DAVPEVPKEQAQGILPKLIATLVSRRRQVKSLMKDKNATPEELATWDIKQLALKLTANSM 959

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YGCLG++ SRFYA+PLA L T +GREILRST +L ++N +L+VIYGDTDS+MI++  D++
Sbjct: 960  YGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESN-SLQVIYGDTDSVMINANKDNV 1018

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            A+A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +   +G   E +E KG
Sbjct: 1019 AEALRVGHEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINMVEVNGKWVEKMEVKG 1078

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDM RR++  LSKE+ +  L++ILS    E  V+ IH  L  +   MR G V ++KY+I+
Sbjct: 1079 LDMKRREYCGLSKEISNRILTEILSGDDTEVSVQRIHEYLRDISAKMRDGAVPVQKYIIS 1138

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              L K P+ YP+A + P VQVALR    G +     GD + YII    G S  +S  +A+
Sbjct: 1139 TQLGKAPKDYPNADSMPQVQVALRELAKGKT--IRKGDVISYIIT---GDSKTTSEAVAK 1193

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RA  P ++ K +     D+++Y  +QI P V RLCA+I GTS  +LA+ LGLD  ++ S 
Sbjct: 1194 RAYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENLGLDVRRYSSN 1253

Query: 1295 PSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSSICMSVSE 1349
             +   S         L   + D  R++ C  L L C  C  S +F+  A  SSI    + 
Sbjct: 1254 TNNNSSGPQDLEIHPLESQIPDSLRFQSCARLSLRCRKCKTSHSFEGLASPSSIN---NV 1310

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDE 1408
             PS           ++CP C        + P + +  QV+       + YY+G ++CDD 
Sbjct: 1311 TPS----------GIQCPSC------QYVLPTLSVVAQVEAAVRAQTARYYEGWLVCDDS 1354

Query: 1409 TCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
            +C   T  ++  + G    G+       C GR+  +YTE D+Y QL YF  L D  +   
Sbjct: 1355 SCGNRTRQIS--VYGTRCLGSKGLARGECGGRMRYEYTERDIYNQLVYFASLWDVDKAKS 1412

Query: 1469 K-----------MEISA----KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            K            ++SA    ++ +  E N++R         V++  ++C   WV ++ +
Sbjct: 1413 KAKENNDEDADAAKLSAEERERVAIMAEHNRVR--FGTVKGVVEKYLDKCGRRWVAMDTL 1470



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 37  RRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV 96
           R+SG    Y++   + +Y+ V E++Y  +V R R     F+VDD+G GY D+G+EE   +
Sbjct: 18  RQSGKKKTYDVGEIDELYEEVDENQYKKIV-RDRLNEDDFVVDDNGEGYADDGREEWDRL 76

Query: 97  AGLPSSSDDE-SLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLT 155
               S S++E  L G +  K ++ +++   + + N R      T  A     ++      
Sbjct: 77  PQYHSDSEEELGLPGSKPRKSKKQKEQEDAKRDANDRNITEYFTKGAVKAPPKQ------ 130

Query: 156 STAMFKKSKDEKVKESESVIDEVLAEFAPDEADR--ERRRRSV 196
              + K  +DEK    + +ID+V A+  P  A R  ++R RSV
Sbjct: 131 --KVIKTEEDEKF--LDDLIDQVTAQI-PVPATRVSKKRDRSV 168


>gi|171687046|ref|XP_001908464.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943484|emb|CAP69137.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1472

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 437/1226 (35%), Positives = 633/1226 (51%), Gaps = 146/1226 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNG 386
            +++DGSL  +  D  E       G+L LFGKV    T+H  SC V + N+ R +Y +P  
Sbjct: 343  IEEDGSLNLFWTDYTEV-----NGSLCLFGKVLNKKTNHHVSCFVKIDNILRKLYFLPRK 397

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               Q     K++   E           ++ DV      E+   +   NV  Y +    R+
Sbjct: 398  TRVQG----KVDTGEE----------VEMMDVY----NEVDAIMTKKNVGMYKIKACTRK 439

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y LK+ YP+   P+  +  GE F  + GT+++  E F++ + +KGP 
Sbjct: 440  YAFELPDVPKEGQY-LKLLYPYTKAPIDMNTTGETFSHVFGTNTALFEQFVLWKNIKGPC 498

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S C+ E+ VD P  +     S++V E PP+T+ +I L+T+FN +
Sbjct: 499  WLKIED-ADFGALKNSSHCRLEVLVDHPNMVAPFKDSENV-EAPPLTLMSIALRTIFNAK 556

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI++ S        +     A   K P     FTVVR   G  FP+GF   A +R 
Sbjct: 557  ANKQEILAISARIYEDVSLSDTTPAD--KLP--CRTFTVVRP-QGTAFPLGFETMAKER- 610

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             K G   L  E S  A+L+  + ++  +D DV++GH + G D  +LL+R    +  +  W
Sbjct: 611  -KRGLIKLVKEES--AMLSFFLAQVDVVDPDVIMGHQLEGVDYSILLNRLHEKK--THQW 665

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----S 739
            S++GRL+RS+ P    + G  +F   A   IMS   GRLLCD    + D  + V     S
Sbjct: 666  SRLGRLRRSQWPASMGKVGGNVF---AERQIMS---GRLLCD---LANDAGKSVMMKCQS 716

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L  D  R+++     LK    T + LM+ I + E D +    L     +L
Sbjct: 717  WSLTEMCNLYLPTDVPRRDLDNEAALKSLAVTKDGLMDYISHAEIDTYYVAALALRTQIL 776

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +       K R+  
Sbjct: 777  PLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKEPF-------KGRARP 829

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              E+   E    +D                      GGLV EP+KGLYDK++L++DFNSL
Sbjct: 830  EDEEDGGEAGKKKDKY-------------------KGGLVFEPEKGLYDKFVLVMDFNSL 870

Query: 917  YPSIIQEYNICFTTVERS--PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TA 972
            YPSIIQEYNICFTTV+R+   DG VP +P  +  GVLP L+  LV RRR VK+ MK  TA
Sbjct: 871  YPSIIQEYNICFTTVDRTFLEDG-VPQVPEKQDLGVLPRLIATLVDRRRQVKSLMKDKTA 929

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
            +  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GRE+LRST DL ++ 
Sbjct: 930  TPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREVLRSTKDLAES- 988

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            + L+VIYGDTDS+MI++ +D++A A  +  +    VN  YK LEID+D +++R+LL  KK
Sbjct: 989  MQLQVIYGDTDSVMINANVDNVADALRVGREFKAAVNGSYKKLEIDIDNIFRRILLQAKK 1048

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            KYAAV +   DG   E +E KGLDM RR++  LS+E+    L +ILS    ED V+ IH+
Sbjct: 1049 KYAAVNLVETDGKYVEKMEIKGLDMKRREYCPLSREISKKLLDEILSGNDIEDSVQKIHD 1108

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAY-PDAKNQPHVQVALRLKQSGYSTGCSAG 1211
             L ++   MR G+V + KY+I   L K P  Y  +    P +QVALR    G +     G
Sbjct: 1109 YLREISSKMREGKVQIPKYIILTQLGKSPTEYGQNGDTMPQIQVALREMARGKT--MRKG 1166

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D V YII    G +  SS   A+RA  P ++ K   +   D+++Y  +QI P V RLCA+
Sbjct: 1167 DVVSYIIT---GDAKQSSEHFAKRAYTPQDVLKAGSELSPDVEWYIGKQIFPPVERLCAN 1223

Query: 1272 IEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSS------LLFAVGDEERYRGCEPLIL 1325
            I GTS  +LA+ LGLDP +F +  S + S            L   + D+ R+  C+ L+L
Sbjct: 1224 ITGTSTSQLAENLGLDPRRFANNNSNSGSGSAGGQDLEIHPLESQIPDQVRFADCKRLLL 1283

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C +C  T     +  S+ M                + L CP C     +  +S   I  
Sbjct: 1284 RCRACKGTSAFEGLLGSVEMVTP-------------KGLACPSC-----SATLSTLSIVA 1325

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            QV+ Q     S YY+G ++C D  C   T  +++   R +G    G        C GR+ 
Sbjct: 1326 QVEAQVREQTSRYYEGWLVCGDADCGNRTRQMSVYGDRCLGPKGLGR------DCMGRMR 1379

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIEKM---------------EISAKIPLEKELNKIRP 1487
             ++ E D+Y QL YF  L D  +  EK                E   ++ +  E N++R 
Sbjct: 1380 WEFGERDMYNQLVYFASLFDVDKAKEKATSRATGGETGEVVTGETRERVMVMAEHNRVR- 1438

Query: 1488 VVALAASTVQRIRERCAYGWVKLNDI 1513
                    V R  ++C   WV ++ +
Sbjct: 1439 -FGTVKGVVDRYLDKCGRQWVAMDTL 1463



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 73/121 (60%), Gaps = 12/121 (9%)

Query: 17  AEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGF 76
           + A ++ +    L+ALR  G++  D+  Y ++    +Y+ V E++Y  +V R+R     F
Sbjct: 2   SRAGSKRDKFAELRALRESGKKKFDT--YEVEEVEDLYEEVDENQYKKIV-RQRLNEDDF 58

Query: 77  IVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDG-----QRSIKKQRIEKRGKKE-NNQN 130
           +VDD+G GY D+G+EE W    +P++ D ES DG     +R  KKQR E++ K++ N++N
Sbjct: 59  VVDDNGEGYADDGREE-WD--RIPAAYDSESEDGVEERKERKSKKQRDEEKAKRDANDRN 115

Query: 131 V 131
           +
Sbjct: 116 I 116


>gi|340905438|gb|EGS17806.1| DNA polymerase alpha catalytic subunit-like protein [Chaetomium
            thermophilum var. thermophilum DSM 1495]
          Length = 1495

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 432/1236 (34%), Positives = 643/1236 (52%), Gaps = 147/1236 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIP-- 384
            +++DGSL FY  D  E       G+L LFGKV     +H  SC V V N+ R +Y +P  
Sbjct: 346  IEEDGSLHFYWTDYTEL-----NGSLCLFGKVLNKKKNHYVSCFVKVDNILRKLYFLPRK 400

Query: 385  ----NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIV 440
                NG   +TDE +++                      + +  E+   +  L V  + +
Sbjct: 401  YRMRNG--VETDEPVEM----------------------MDVYNEVDALMTKLGVDMHKI 436

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKR 500
             P K++YAF    IP+   Y LK+ YP+  P +     GE F  + GT+++  E F++ R
Sbjct: 437  KPRKKKYAFELPGIPSEAEY-LKLMYPYTKPQIELGKTGETFSHVFGTNTALFEQFVLWR 495

Query: 501  KVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
             + GP WL I   +   A +  S C+ E+ V  P  I     S+   + PP+T+ ++ ++
Sbjct: 496  NIMGPCWLKIED-ADFGALKNASHCRLEVLVSRPDSISPIGDSEST-DAPPLTLMSVAIR 553

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS--HFTVVRKLDGGIFPMGF 618
            T+FN R +  EI++ S      A+I   +L ++      L    FTV+R   G  FP+GF
Sbjct: 554  TIFNARDNKQEILAIS------ARIYEDVLLNDTTPADKLPCRTFTVIRP-QGATFPIGF 606

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
             K A +R  K G   L  + S+  +L+  + +L  +D DV++GH + G D  +LL+R  +
Sbjct: 607  EKLAKER--KKGLIKLMRQESD--MLSFFLAQLDMVDPDVIIGHQLEGVDYSILLNR--L 660

Query: 679  CRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR 736
                +  WS++GRL+RS  P    + G  +F           +AGRLLCD    + D  +
Sbjct: 661  YERKTHQWSRLGRLRRSAWPASIGKVGGNLFAE------RQIMAGRLLCD---LANDAGK 711

Query: 737  EV-----SYSLTQLAKTQLNKD---RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSM 787
             V     S+SLT++    L+ D   R+++     LK + T  E LM+ I + ETD +   
Sbjct: 712  SVMYKCQSWSLTEMCSMYLSGDDNRRRDIDNDAALKTWATSKEGLMDYISHAETDTYFIA 771

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             L     +LPLT+ LTN++GN W +TL G RA+R E++LLH F+   YI+PDK       
Sbjct: 772  ALALRTQILPLTKILTNLAGNSWARTLTGTRAERNEFILLHEFKKAGYILPDKIP----- 826

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
              AK R+    E+++ +                              LV EP+KGLYDKY
Sbjct: 827  --AKGRARVDEENQDDDGGEGGKKKDKYKGG----------------LVFEPEKGLYDKY 868

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERS----PDGLVPHLPS-SKTTGVLPELLKNLVQRR 962
            +L++DFNSLYPSIIQEYNICFTTV+RS     +  VP +P   +  G+LP LL  LV RR
Sbjct: 869  VLVMDFNSLYPSIIQEYNICFTTVDRSNLSDDEDAVPAVPGKDRDQGILPRLLGKLVDRR 928

Query: 963  RMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R VK  MKT  A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA LIT +GRE
Sbjct: 929  REVKKLMKTPRATPEQLATWDIRQLALKLTANSMYGCLGYTKSRFYARPLAVLITYKGRE 988

Query: 1021 ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            ILRST  L ++ ++L+VIYGDTDS+MI++ +D++  A  +  K+ QEVNK YK LEID+D
Sbjct: 989  ILRSTKALAES-MSLQVIYGDTDSVMINANVDNVLAAIEVGNKLKQEVNKLYKRLEIDID 1047

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +++R+LL  KKKYAA+ +  ++G   E +E KGLDM RR++  LS+EV    L +ILS 
Sbjct: 1048 NVFRRILLQAKKKYAAINMVEENGRWVEKMEVKGLDMRRREYCPLSREVSKRILDEILSG 1107

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
               E  V+ +H  L ++   MR G + L KY+I   L K P+ YP+A + P VQVALR  
Sbjct: 1108 DDTEVSVQRVHKYLREISAKMREGAIPLNKYIILTQLGKAPKEYPNADSMPQVQVALREM 1167

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGS-SVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
              G       GD V YII   +  +SGS S+  A+RA  P ++ K D   + D+++Y  +
Sbjct: 1168 ARG--KVMRRGDVVSYIITTNKNNTSGSDSLPPAKRAYTPQDVMKADSGLVPDVEWYIGK 1225

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS------SLLFAVGD 1313
            QI P V RLCA+I GTS  +LA+ LGLDP  + +  S   ++  ++       L   + D
Sbjct: 1226 QIMPPVERLCANIVGTSATQLAENLGLDPRHYANNRSAAYNTADAARDLEIHPLESQIPD 1285

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRT---LRCPKCP 1370
              R+  C  L L C +C   F    +   +  S +++  +   E N   T   + CP C 
Sbjct: 1286 HIRFSNCARLTLRCRACKHLFPFEGLL-PLPASDAQQQKEAAEEQNKIITPSGIHCPSC- 1343

Query: 1371 EEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTV 1430
                +  +    +  QV+       + YY+  + CDD +C   T  +++        GT 
Sbjct: 1344 ----SALLPTLTLVAQVETAVRAQTARYYETWLTCDDASCGNRTRQMSV-------YGTR 1392

Query: 1431 CPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM--------EISAKIP 1477
            C   PR     C GR+  +  E ++Y QL YF  L D  +  +K+        E   ++ 
Sbjct: 1393 CLG-PRGLARDCLGRMRFEMGEREMYNQLVYFAGLWDVDKARKKVTEEKSVSEEEKERVL 1451

Query: 1478 LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
               E N+ R         V +  E+C   WV ++ +
Sbjct: 1452 ALAEHNRER--FGTVKGVVDKYLEKCGRQWVAMDTL 1485



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 29  LKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDE 88
           L+ALR+ G++  D+  Y +     +Y+ V E++Y  +V R R     F+VDD+G GY D+
Sbjct: 13  LRALRQAGKKVFDT--YQVAEVEDLYEEVDENQYKKIV-RARLNQDDFVVDDNGEGYVDD 69

Query: 89  GQEEDWSVAGLPSSSDDE-SLDGQ-RSIKKQRIEKRGKKE 126
           G+EE W      S  DDE S+ G+ R  KKQR +++ K++
Sbjct: 70  GREE-WDHEEYYSDEDDEVSVRGKDRKNKKQREQEQAKRD 108


>gi|389639082|ref|XP_003717174.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae 70-15]
 gi|351642993|gb|EHA50855.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae 70-15]
 gi|440475723|gb|ELQ44386.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae Y34]
 gi|440486034|gb|ELQ65937.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae P131]
          Length = 1482

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 424/1225 (34%), Positives = 639/1225 (52%), Gaps = 136/1225 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            V+ DGSL F+  D  E       G+L LFGKV  K    + SC + V N+ R +Y +P  
Sbjct: 344  VEADGSLRFFWTDYTEV-----NGSLCLFGKVLDKKTKAYVSCFIKVDNILRKLYFLPR- 397

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                        +D E+    P+    ++ DV     +E+ + +  + V  + +    R+
Sbjct: 398  --------ENRHRDGEDCPDEPV----QMMDVY----SEVDDIMTKMKVDMHKIKACTRK 441

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y LK+ YP+  P L     GE F  + GT++   E F++ + + GP 
Sbjct: 442  YAFELPDVPKEGKY-LKLLYPYTKPQLDLARSGETFSRVFGTNTGLFEQFVLLKNIMGPC 500

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S C+ E+ V+ P  I V S +  + + PP+T+ ++ L+T FN +
Sbjct: 501  WLKIGD-ADFGAIRNASHCRLEVLVEHPNQISVMSETTDLPDTPPLTIMSLALRTTFNAK 559

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI++ S        +D    A   K P     FT++R  +G  FP+GF  EA  ++
Sbjct: 560  DNKQEILAISARVYENVSLDETTPAE--KLP--CRTFTLIRP-NGAAFPIGF--EALTKD 612

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             +    ++     E  +L+  + ++   D DV+VGH + G D  +LL+R    ++    W
Sbjct: 613  KRRIKGLVKTLKQESEMLSFFLAQVDVADPDVIVGHQLEGVDYSILLNRLHERKI--HQW 670

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----S 739
            S++GRL+RSE P    + G  +F   A   IMS   GRLLCD    + D  + V     S
Sbjct: 671  SRLGRLRRSEWPSSMGKMGGNVF---AERQIMS---GRLLCD---LANDAGKSVMTKCQS 721

Query: 740  YSLTQLAKTQLN-------KDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
            +SLT++    L          R++V     LK +  T + LM+ + + E D +    L  
Sbjct: 722  WSLTEMCNLYLGGGGANAASRRRDVDNEAALKTWAGTKDGLMDYLTHIEADTYFIAALAL 781

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
               VLPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +       +
Sbjct: 782  RTQVLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKRAF-----KGR 836

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            QR+    E+    E   +                     Y GGLV EP+KGLYDK++L++
Sbjct: 837  QRAAEEDEEGQAGETGKKKD------------------KYKGGLVFEPEKGLYDKFVLVM 878

Query: 912  DFNSLYPSIIQEYNICFTTVERSP-----DGLVPHLPSSK-TTGVLPELLKNLVQRRRMV 965
            DFNSLYPSIIQEYNICFTTV+R       +  VP +P ++   G+LP L+  LV RRR V
Sbjct: 879  DFNSLYPSIIQEYNICFTTVDRQSRIDDEEDAVPEVPPAELDQGILPRLIATLVSRRRQV 938

Query: 966  KTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            K+ MK  +A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR
Sbjct: 939  KSLMKDKSATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAILTTYKGREILR 998

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
            ST +L +NN +L+VIYGDTDS+MI++ +D++A A  +     + VN++Y+ LEID+D ++
Sbjct: 999  STKELAENN-SLQVIYGDTDSVMINANVDNVAAAFRVGQDFKRAVNERYRLLEIDIDNVF 1057

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
            +R+LL  KKKYAA+ +   DG   E +E KGLDM RR++  LSKE+    L +ILS    
Sbjct: 1058 RRILLQAKKKYAAINMVEVDGKFVEKMEVKGLDMRRREYCALSKEISARILDEILSGDET 1117

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            E  V  IH  L  +   MR+ ++  +KY+I   L K P+ YP+  + P VQVALR    G
Sbjct: 1118 EVSVTRIHEYLRDIAAKMRAQEIPPQKYIILTQLGKGPKEYPNGDSMPQVQVALREIARG 1177

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
             +     GD + YII      ++GS    A RA  P ++ K D     D+D+Y ++QI P
Sbjct: 1178 KT--IRKGDVISYII------TTGSEPA-ATRAYTPPDVLKPDSGLSPDVDWYMAKQIFP 1228

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM---SSDPSSSLLF-----AVGDEE 1315
             V RLCA+I GTS  +LA+ LGLDP ++ S   +     + D  + L        + D+ 
Sbjct: 1229 PVERLCANIIGTSTAQLAENLGLDPRRYASVSGQNKGFGNGDADAGLEIHPLESQMPDDV 1288

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
            R+R C  L L C +C +T        S+   +     + +  +     + C  C      
Sbjct: 1289 RFRNCSRLELRCRACKAT--------SVFEGLQAVDGEEKQSHVTPSGVACGSC-----G 1335

Query: 1376 GRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCP 1432
              I P  +  QV+R      + YY+G ++CDD +C   T  +++   R +G   +G    
Sbjct: 1336 ATIPPVSVIAQVERAVRLTTARYYEGWLVCDDTSCGARTTQMSVYGSRCLG--PKGLAID 1393

Query: 1433 NYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR----GIEKMEISAKIPLEKELNKIRPV 1488
                C GR+  ++ E DLY QL YF  L D +R    G++      ++    E N++R  
Sbjct: 1394 ----CMGRMRYEFGERDLYNQLVYFASLFDVERARAGGVKDEAARERLLALAEQNRVR-- 1447

Query: 1489 VALAASTVQRIRERCAYGWVKLNDI 1513
                 +TV R  ++C   WV ++++
Sbjct: 1448 FGTVKATVDRYLDKCGRQWVAMDNL 1472



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 13/110 (11%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  L+ALR+ G+++ D+  Y ++ E  +Y+ V ED Y  +V R R     F+VDD+G GY
Sbjct: 11  LAELRALRQAGKKTFDT--YEVEQEGSLYEEVDEDSYKKIV-RERLNQDDFVVDDNGEGY 67

Query: 86  GDEGQEEDWSVAGLPSSSDDESLDG-------QRSIKKQRIEKRGKKENN 128
            D+G+ EDW    +   SD E  DG        ++ K+ R E++ K++ N
Sbjct: 68  ADDGR-EDWDRVPVYDESDSE--DGAPARKKTSKAAKRARDEEQAKRDAN 114


>gi|406864839|gb|EKD17882.1| DNA polymerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
          Length = 1450

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 425/1221 (34%), Positives = 629/1221 (51%), Gaps = 150/1221 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN- 385
            +++DGSL  +  D  E       G+L LFGKV  K   +  SC + V N+ R ++ +P  
Sbjct: 336  IEEDGSLHMFWTDYTEV-----NGSLCLFGKVQNKTDRSFVSCFLKVDNILRKLFFLPRE 390

Query: 386  ----GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
                G    TDE+                   +++DV      E+   +  + V  + + 
Sbjct: 391  YRQRGGRDTTDEV-------------------EMKDVY----EEVDELMGKMRVGMHKIK 427

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKR 500
            P  R+YAF   +IP    Y LK+ YP+  P L P    G  F  + GT++   E F++ +
Sbjct: 428  PCTRKYAFELPDIPREGEY-LKLLYPYSKPQLQPEHQTGTTFSHVFGTNTPLFEQFVLWK 486

Query: 501  KVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
             + GP WL I   +        S+CK E+ V  P  I   S S ++ E PP+T+ ++ L+
Sbjct: 487  NIMGPCWLKIED-AEFGVLNNASYCKLEVQVSKPNLITALSESDNL-EAPPLTLMSVALR 544

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGF 618
            T  N +++  EI++ S      A+I   +  ++   P  L    FTV+R      FP+GF
Sbjct: 545  TTLNVKENKQEILAIS------ARIYQNISLTDTTPPDKLPCHTFTVMRPASTS-FPLGF 597

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
              E      K    ++     E+ +L+  +  L  +D DVL+GH + G D  +LL R Q 
Sbjct: 598  ENEV----KKKAKGMVKLVKQEQEILSFFLARLQVVDPDVLIGHQLEGVDFSILLSRLQA 653

Query: 679  CRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDL 734
             + P   WS+IGR++RS  P    + G   F   A       IAGRLLCD         +
Sbjct: 654  KKTPQ--WSRIGRMRRSAWPSSMGKMGGNFFAERA------LIAGRLLCDLANDAGKSAM 705

Query: 735  LREVSYSLTQLAKTQLNKD-RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFH 792
             +  S++LT++    L  + R E+     LK + T  + LM+ + + E D +    L   
Sbjct: 706  SKCTSWTLTEMCSIYLPGEIRLEMDNEQALKTWATTKDGLMDYVGHCEADTFFIAALALK 765

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +         
Sbjct: 766  VQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKAVF--------- 816

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            +  H +E+ N +E + +                K+   Y GGLV EP+KGLYDK++L++D
Sbjct: 817  KGKHQIEEENADEESGD---------------VKKKDKYKGGLVFEPEKGLYDKFVLVMD 861

Query: 913  FNSLYPSIIQEYNICFTTVER----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            FNSLYPSIIQE+NICFTTV+R    + +  VP +P  +  GVLP+L+  LV RRR VK  
Sbjct: 862  FNSLYPSIIQEFNICFTTVDRLNLSNDEEQVPEVPVDQDLGVLPKLIATLVSRRREVKKL 921

Query: 969  MK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK  TA+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 922  MKDKTATTEQLSTWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTK 981

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL ++N +L+VIYGDTDS+MI++ +D++  A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 982  DLAESN-SLQVIYGDTDSVMINANVDNVKDALRVGEEFKKAVNERYRLLEIDIDNVFRRI 1040

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L +ILS    E V
Sbjct: 1041 LLQAKKKYAAINLVQVDGKYVDKMEVKGLDMKRREYCNLSKEVSAKLLDEILSGDDMELV 1100

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V  IH+ L ++   MR G V   KY I   L K P+ YP A + P VQVALR    G + 
Sbjct: 1101 VTRIHDYLREISTKMREGAVPTHKYTIYTKLGKAPQDYPQADSMPQVQVALRELSRGKTV 1160

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                 D + YI+    G    SS G A+R+  P ++ K +     D+++Y  +QI P V 
Sbjct: 1161 --RKDDVIAYIVT---GDGKNSSEGPAKRSYTPQDVSKAESGLTPDVEWYLYKQIFPPVE 1215

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQ--SKPSETMSSDPSSSLLFAVGDEERYRGCEPLI 1324
            RLCA+I GT   R+ADCLGLD  K+   +  +        S L   + DE R++    L 
Sbjct: 1216 RLCANIAGTDTVRIADCLGLDVRKYSINNNNANAGGEAEISPLESQIDDEVRFKDAFRLR 1275

Query: 1325 LSCPSCSSTFDCPAVCSSI--CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM 1382
            L C +C   F    +  S+  C +                T RC           +S   
Sbjct: 1276 LQCRACKGKFGFEGLVGSLDSCSAAG-------------ITCRC--------GHTLSNIS 1314

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNG 1439
            I  Q++ Q     S YY+G ++CDD+ C   T  +++   R +G    G  C       G
Sbjct: 1315 IIAQLEHQIRQQTSRYYEGWLVCDDQACGNRTRQMSVYGHRCLGPKGLGHGCL------G 1368

Query: 1440 RLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKEL-------NKIRPVVALA 1492
            ++  +YTE  +Y QL YF  L D    +EK + +AK   E+EL       N++R      
Sbjct: 1369 KMHYEYTEKMIYNQLLYFSSLFD----VEKAKTAAK-GTERELVMALVEHNRVR--FGTL 1421

Query: 1493 ASTVQRIRERCAYGWVKLNDI 1513
             + V++  ++C   WV ++ +
Sbjct: 1422 KAVVEKYLDKCGRQWVAMDSL 1442



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 9/112 (8%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           ASAR E    L+AL+  G++  D+  Y ++ E  +Y+ V ED Y  +V R R     F++
Sbjct: 5   ASAR-EKFAELRALKASGKKRLDT--YQVQEEEDLYEEVDEDGYKKVV-RDRLNQDDFVI 60

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQ----RSIKKQRIEKRGKKE 126
           DD+G GY D+G+EE W       S+ +E L  +    ++ K+QR E + KKE
Sbjct: 61  DDNGEGYADDGREE-WDQQPNYGSASEEELPAKGKSGKAAKRQREEDKAKKE 111


>gi|294881182|ref|XP_002769285.1| dna polymerase alpha catalytic subunit, putative [Perkinsus marinus
            ATCC 50983]
 gi|239872563|gb|EER02003.1| dna polymerase alpha catalytic subunit, putative [Perkinsus marinus
            ATCC 50983]
          Length = 1438

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 433/1180 (36%), Positives = 613/1180 (51%), Gaps = 175/1180 (14%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--------AGSTHHSCCVVVKNMQRCVY 381
            ++DGSL  Y+LD +E +       LYLFGK +          + + SCCVVV N+ R  +
Sbjct: 340  EEDGSLMMYLLDVYEDVLPNKTPALYLFGKTRRRDGKASSGRAEYESCCVVVTNIMRNCF 399

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P           +  +D  E + +  +  ++ +     ++ +    L  +N   Y   
Sbjct: 400  FLPR----------EQSEDEAECKAACYSVMQEFE----SMRKKSGGVLAAVN--RYKCK 443

Query: 442  PVKRRYAFGQAE-IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKR 500
             V R Y F Q   IP G    LK+ Y    P LP+ L+G++F  + GT++S  ELFL+KR
Sbjct: 444  FVWRNYCFDQVHGIPHGRLGFLKVVYSSNCPALPSGLEGKSFSHVFGTNTSLTELFLIKR 503

Query: 501  KVKGPSWLSISKFSSCPAP--QRVSWCKYEITVDS-PKDIRVSSSSKHVAEVPPVTVTAI 557
            ++ GP W+ IS  S  P+    ++SWC  E+ V++  K I V ++       PP+++ ++
Sbjct: 504  RIMGPCWIQISSGSFNPSTTLNKLSWCAREVMVETGTKGISVVAADS-TPPPPPLSIMSL 562

Query: 558  NLKTVFNKRQDV-----------------NEIVSASVVCCHKAKIDTPMLASEWKKPGML 600
            ++KT   K                     +E+  A V   H   +D    + E  + G  
Sbjct: 563  SIKTNTMKASKAPTGKGRSTAAAAAATAQHEV--AVVAYYHNPTLDVDEASEECLRRGGC 620

Query: 601  SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLV 660
            S   V          +  N              +  ESSERALL+ L   + + D D+++
Sbjct: 621  SLRDVCYSWFVCWIVLMQN--------------VVVESSERALLSHLAAMVTRADPDIIL 666

Query: 661  GHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA 720
            GHNI GF LD+L+ R Q  ++P+  W K  RLKR        GR   G G+     S  A
Sbjct: 667  GHNIFGFGLDILVQRMQHHKLPA--WHKFSRLKRD-------GRGNAGGGSLWLGRSLTA 717

Query: 721  GRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE 780
            GRL+CDT+L +R+ +R  +Y L  L+   L   R  V    ++K ++   +L  L E+  
Sbjct: 718  GRLVCDTYLSAREYMRLTTYDLGSLSMKLLKTARAPVSLDSLVKFYEDPRALSALAEHTL 777

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
            TDA L + + + L VL LTRQLTN++GNLW  +LQ  RA+R E LL+H F  KK+IVPDK
Sbjct: 778  TDAVLQLRVGWALQVLSLTRQLTNLAGNLWSHSLQNKRAERNEILLVHEFHRKKFIVPDK 837

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
                       +R      DR   ++   D N D   +    R+ K   AYAGGLVLEPK
Sbjct: 838  -----------ERPG----DRKSHQVDVFDENGDTKAATAGPRRKK--AAYAGGLVLEPK 880

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------SPDGLVPHLPS---SKTT 948
             GLYDK +LLLDFNSLYPSII+EYNICFTTVER            G +P LP     +  
Sbjct: 881  AGLYDKLVLLLDFNSLYPSIIREYNICFTTVERLDAHDSALEENAGAIPELPKRAPGEGD 940

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGLKI-QQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
             +LP+++  LV+ R+ VK  +KT S  K   QLDI+Q+ALKLTANSMYGCLGFSNSRFYA
Sbjct: 941  AILPQVITRLVESRKDVKKLLKTCSNPKTGNQLDIRQKALKLTANSMYGCLGFSNSRFYA 1000

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQE 1067
            KP+A LIT+ GRE L++TVD+V+N L L+V+YGDTDSI +H+G +   +A  I  +++ E
Sbjct: 1001 KPIAALITRTGRETLQATVDIVENQLRLDVVYGDTDSIFVHTGTEAFDQAMRIGAQIMAE 1060

Query: 1068 VNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLS 1126
            +NK+YK LE+D+DG++KR+LLLKKKKYA VKV  +  G+  +  E KGLD+VRRDW  LS
Sbjct: 1061 INKRYKKLELDVDGVFKRLLLLKKKKYAGVKVIDWAQGIAEK--EYKGLDLVRRDWCPLS 1118

Query: 1127 KEVGDFCLSQILSERS---------------------CEDVVESIHNSLMKVQEDMRSGQ 1165
            K++GD  L  +L  R+                      E VVE +H+ +  +   M + +
Sbjct: 1119 KKMGDEVLRCLLGLRAESPTPASSDNGLADVDRSAQEAEHVVEWLHDYVKSISLKMDNDE 1178

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC--CEQG 1223
            + LE YVITK LTK P  YPDAK+Q HV VA  + +SG+      G+ +PY+I    E  
Sbjct: 1179 IPLEDYVITKALTKMPADYPDAKSQAHVMVAKSMMESGHVI--RPGNEIPYVITRPVESA 1236

Query: 1224 TSSGS--------------SVGIAQRARHPDELKK-GDGKWMIDIDYYASQQIHPVVSRL 1268
            T + +              S  +A RAR PDE++K G     ID  +Y S QIHP + RL
Sbjct: 1237 TKADADGDPDTKPAALGNDSQSVAARARSPDEVRKLGSSVIQIDTQWYKSHQIHPPLVRL 1296

Query: 1269 CASIEGTSPERLADCLGLDPSKFQS---KPSETMSSDPSSSLLFA----VGDEERYRGCE 1321
            CA + GT    LA+CLGLDPSKF S     + T   D   +++ +    +  + +Y    
Sbjct: 1297 CAPVSGTDAAHLAECLGLDPSKFASIGMSNNNTGDGDDIETVMASLSQNIDTDTKYSDAR 1356

Query: 1322 PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP- 1380
              +           C  VC  I  ++ +K               C KC  E+ +  I   
Sbjct: 1357 KFLAGTARQYKCHKCKTVC-HIADAIKQK--------------ECVKCSAEISSALIRNL 1401

Query: 1381 -GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
              +I  +V R+A G       G + CDDE C   T  L L
Sbjct: 1402 LTLILRKVTREA-GL------GWVRCDDEGCGRVTRQLPL 1434


>gi|164424154|ref|XP_963131.2| hypothetical protein NCU07870 [Neurospora crassa OR74A]
 gi|157070398|gb|EAA33895.2| hypothetical protein NCU07870 [Neurospora crassa OR74A]
          Length = 1479

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 420/1258 (33%), Positives = 664/1258 (52%), Gaps = 145/1258 (11%)

Query: 301  AGWKEVSGG-NMVLDEGKSGLNCQESEFE--VDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            A W E++   N+V      G +  + +++  +++DGSL  +  D  E       G+L LF
Sbjct: 313  ASWNEINQKLNVVSMSQSEGRSVGKIDYKDAIEEDGSLNMFWTDYTEV-----NGSLCLF 367

Query: 358  GKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKV  K   T+ SC V V N+ R ++ +P     +  E    E +  +            
Sbjct: 368  GKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGEETTEEVEMMD------------ 415

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
                  +  E+   +  +NV  + +    R+YAF   ++P    Y LK+ YP+  P +  
Sbjct: 416  ------VYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKESQY-LKLLYPYTKPAMEP 468

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDS 533
              KGE F  + GT+++  E F++ + + GP WL I  + F+S    +  S CK E+ V+ 
Sbjct: 469  THKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTSL---RNASHCKLEVLVEH 525

Query: 534  PKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
            P  + V  +++ + E PP+T+ ++ ++T FN + +  EI++ S     +  +D  +  S+
Sbjct: 526  PNMVSVPDNAESI-EPPPLTLLSLAMRTAFNPKDNKQEILAVS----GRVYLDVSL--SD 578

Query: 594  WKKPGMLSH--FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
               P  L+   FT VR   G  FP+GF   A +RN      VL     E  +LN L+ ++
Sbjct: 579  TTPPDKLASRSFTAVRPY-GSAFPIGFETLAKERNR----GVLKLFKQEHEILNFLLAQI 633

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGS 709
              +D DV++GH + G D  +LL+R    +  +  WS++GRL+RS+ P   ++ G  +F  
Sbjct: 634  DVVDPDVILGHQLEGVDYSILLNRLHEKK--THQWSRLGRLRRSQWPSSIVKMGGNVF-- 689

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKEVGPHDV 762
             A   IMS   GRLLCD    + D  + V     ++SLT++    L  +  R+++     
Sbjct: 690  -AERQIMS---GRLLCD---LANDAGKSVMTKCQTWSLTEMCSLYLGGESRRRDIDNEVA 742

Query: 763  LKMFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            LK +   +   LM+ I + ETD +    L     +LPLT+ LTN++GN W +TL G RA+
Sbjct: 743  LKTWANADKHGLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAE 802

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            R EY+LLH F   KY+VPDK T+    ++ ++ +     +   ++   +           
Sbjct: 803  RNEYILLHEFHRNKYVVPDKQTFKGRQRIEEENAEEEGGEGGKKKDKYKGG--------- 853

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----D 936
                          LV EP+KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R+     D
Sbjct: 854  --------------LVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTSLSEDD 899

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSM 994
              VP +P  +  G+LP+L+  LV RRR VK+ MK   A+  ++   DI+Q ALKLTANSM
Sbjct: 900  DAVPEVPKEQAQGILPKLIATLVSRRRQVKSLMKDKNATPEELATWDIKQLALKLTANSM 959

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YGCLG++ SRFYA+PLA L T +GREILRST +L ++N +L+VIYGDTDS+MI++  D++
Sbjct: 960  YGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESN-SLQVIYGDTDSVMINANKDNV 1018

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            A+A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +   +G   E +E KG
Sbjct: 1019 AEALRVGHEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINMVEVNGKWVEKMEVKG 1078

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDM RR++  LSKE+ +  L++ILS    E  V+ IH  L  +   MR G V ++KY+I+
Sbjct: 1079 LDMKRREYCGLSKEISNRILTEILSGDDTEVSVQRIHEYLRDISAKMREGAVPVQKYIIS 1138

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              L K P+ YP+A + P VQVALR    G +     GD + YII    G S  +S  +A+
Sbjct: 1139 TQLGKAPKDYPNADSMPQVQVALRELAKGKT--IRKGDVISYIIT---GDSKTTSEAVAK 1193

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RA  P ++ K +     D+++Y  +QI P V RLCA+I GTS  +LA+ LGLD  ++ S 
Sbjct: 1194 RAYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENLGLDVRRYSSN 1253

Query: 1295 PSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKP 1351
             +   S         L   + D  R++ C  L L C  C ++     + S   ++ +  P
Sbjct: 1254 TNNNSSGPQDLEIHPLESQIPDSLRFQSCARLSLRCRKCKTSHPFEGLASPSSVN-NVTP 1312

Query: 1352 SKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDETC 1410
            S           ++CP C        + P + +  QV+       + YY+G ++CDD +C
Sbjct: 1313 S----------GIQCPSC------QYVLPMLSVVAQVEAAVRAQTARYYEGWLVCDDSSC 1356

Query: 1411 KYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG---- 1466
               T  ++  + G    G+       C GR+  +YTE D+Y QL YF  L D  +     
Sbjct: 1357 GNRTRQIS--VYGTRCLGSKGLARGECGGRMRYEYTERDIYNQLVYFASLWDVDKAKSKA 1414

Query: 1467 -------IEKMEISA----KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                   ++  ++SA    ++ +  E N++R         V++  ++C   WV ++ +
Sbjct: 1415 KENNDEDVDAAKLSAEEKERVAIMAEHNRVR--FGTVKGVVEKYLDKCGRRWVAMDTL 1470



 Score = 47.0 bits (110), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 37  RRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV 96
           R+SG    Y++   + +Y+ V E++Y  +V R R     F+VDD+G GY D+G+EE   +
Sbjct: 18  RQSGKKKTYDVGEIDELYEEVDENQYKKIV-RDRLNEDDFVVDDNGEGYADDGREEWDRL 76

Query: 97  AGLPSSSDDE-SLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLT 155
               S S++E  L G +  K ++ ++    + + N R      T  A     ++      
Sbjct: 77  PQYHSDSEEELGLPGSKPRKSKKQKEHEDAKRDANDRDITEYFTKGAVKAPPKQ------ 130

Query: 156 STAMFKKSKDEKVKESESVIDEVLAEF-APDEADRERRRRSV 196
              + K  +DEK    + +ID+V A+   P     ++R RSV
Sbjct: 131 --KVIKTEEDEKF--LDDLIDQVTAQIPVPVTRVSKKRDRSV 168


>gi|443924593|gb|ELU43591.1| DNA polymerase alpha catalytic subunit, putative [Rhizoctonia solani
            AG-1 IA]
          Length = 1321

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 438/1177 (37%), Positives = 615/1177 (52%), Gaps = 180/1177 (15%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHH-----SCCVVVKNMQRCVY 381
            +++DGSL  + LD  E  S      LYL GKV  KA ST       SCCV ++ ++R ++
Sbjct: 274  LEEDGSLRMFWLDYLELDS-----RLYLVGKVIDKAQSTEKVTKWASCCVAIEGIERNLF 328

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
             +P           ++E    E+  +P        DV      E         +  +   
Sbjct: 329  VLPRK--------YRMEF-GHETDTAPTE-----DDVY----DEFDRVRQKNGIKKWAAK 370

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
             V R YAFG+ +IP GE+  +K+ Y +                  G      E F     
Sbjct: 371  FVTRSYAFGEPDIPEGESQWMKVLYGYD-----------------GVWFRLWEYF----- 408

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
                           PA          + V  PK +   S       +PP+TV ++  +T
Sbjct: 409  ---------------PA---------LMIVRDPKAVNPLSGDAGT-NMPPLTVVSLAART 443

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            V N +++  EIV AS+        D+       K+P  +   TVVR L  G  P GF  E
Sbjct: 444  VVNHKENKREIVCASMRIWETNIEDS---TPPEKQPSTVH--TVVRPL--GKLPAGF--E 494

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
            A  R  K+    +   ++E+ LLN L+  L+K D DV+VGH  SGF LDVLL R +  ++
Sbjct: 495  AKVRAEKSAVKPM---ANEKMLLNNLLATLHKHDPDVIVGHEFSGFTLDVLLLRMRELKL 551

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS---RDLLREV 738
                WS++GR +RS      K   I   G++   M    GRLLCD  L S   + +++  
Sbjct: 552  --EHWSRLGRFRRS------KWMNIGKQGSNIRFMQ---GRLLCD--LASDGAKSMIQST 598

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFHLS 794
            S+SLT++ ++QL   R+++ P D    F    S    L+  +++ E DA+L M L   + 
Sbjct: 599  SWSLTEMCQSQLKITREDIDPDDTTSFFDATVSSPDRLLHFVQHCELDAFLQMALAHKIQ 658

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            ++PLTRQLTN++GN W KTL G RA+R EY+LLH F   KY+ PDK T+ K++  A  ++
Sbjct: 659  MVPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYVPPDK-TWAKKSGAAAAKA 717

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                      E+ +++       +     K KR   Y GGLV EPK+GL+DKYIL++DFN
Sbjct: 718  ----------EVVDDEGGAAPVAA-----KSKRD-KYKGGLVFEPKRGLWDKYILVMDFN 761

Query: 915  SLYPSIIQEYNICFTTVERSPDGL----VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWM 969
            SLYPSIIQEYNI FTTV++S D      +P +P S    GVLP L+  LV RRR VK  M
Sbjct: 762  SLYPSIIQEYNIDFTTVDKSDDDSGEVKIPAIPDSGIPQGVLPRLIATLVNRRRQVKNLM 821

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K  TA+  ++ Q DI+Q+ALKLTANSMYGCLGF +SRFYA+PLA L T +GREIL  T +
Sbjct: 822  KDRTATQAQLVQWDIKQKALKLTANSMYGCLGFEHSRFYARPLAALTTFKGREILTHTRE 881

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L +N L+L+VIYGDTDSI ++S + D+  A  IA ++ + VN +Y+ LEIDLDG+++RML
Sbjct: 882  LAEN-LSLDVIYGDTDSIFVNSNVTDLPDALKIANELKKAVNDRYRLLEIDLDGIFRRML 940

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            LL+KKKYAAVKV+    M    +E KGLDM RR++ +       + L QILS    E VV
Sbjct: 941  LLQKKKYAAVKVE---EMNASSVEIKGLDMKRREYCI-------YILDQILSGDDAETVV 990

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E IH  L  + E++R G+V ++ +++ K L K PE YP   + PHV VA R+K+ G    
Sbjct: 991  ERIHEYLRWMGENIRGGKVDMDDFIVFKRLGKAPEDYPKDNSLPHVHVAKRMKERG--GH 1048

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD +PYI C   G  +    G A RA HPDEL+K D +  ID +YY +QQI P V R
Sbjct: 1049 ARIGDVIPYIFCL-GGDGTSVKTGQADRAFHPDELRKTDSELKIDFEYYIAQQILPPVER 1107

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
            LC  IEGT   RLA+CLGLDPS+FQ      +  DP  +L   + D+ER+R      + C
Sbjct: 1108 LCDPIEGTDRARLAECLGLDPSRFQVSVG-VIDDDPYRTLDSQIPDKERFREAAQFTVKC 1166

Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQV 1387
              C  +   P+V S            PE        +RCP C EE+    I    +  Q+
Sbjct: 1167 RKCQGSTVFPSVGS------------PEAPVITSAGVRCPGCSEELTLASIQ-VQLETQL 1213

Query: 1388 KRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR- 1443
            ++Q    ++ YY G M+C+D TC + T  +++   R +          +Y  CN      
Sbjct: 1214 RQQ----INNYYSGWMICEDATCGHRTRGMSVYGKRCLNPGCTAKDPMSYEVCNDGFTWA 1269

Query: 1444 -----------KYTEADLYKQLTYFCHLLDTQRGIEK 1469
                       +Y++  LY QL Y+  L D  + IEK
Sbjct: 1270 SDQWCLHSKFPQYSDLKLYNQLLYYASLFDGHKAIEK 1306


>gi|347833010|emb|CCD48707.1| similar to DNA polymerase alpha catalytic subunit [Botryotinia
            fuckeliana]
          Length = 1471

 Score =  624 bits (1610), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 431/1234 (34%), Positives = 637/1234 (51%), Gaps = 162/1234 (13%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP-- 384
            +++DGSL  +  D  E       G L LFGKVK     T  SC V V N+ R ++ +P  
Sbjct: 342  IEEDGSLHMFWTDYTEM-----HGNLCLFGKVKNKKTGTFVSCFVKVDNVLRKLFFLPRQ 396

Query: 385  ----NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIV 440
                NG    TDE+                   +++DV      E+ + +  + V  + +
Sbjct: 397  YRQRNG-RDTTDEV-------------------EMKDVY----EEVDSMMTKMKVGMHKI 432

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFK---------------DPPLPADLK-GENFCS 484
             P  R+YAF   EIP    Y LK+ YP+                D  L  D + G  F  
Sbjct: 433  KPCTRKYAFELPEIPKEGEY-LKLLYPYSSKCEIHHLATRLTTLDHALNVDQQTGSTFSH 491

Query: 485  LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK 544
            + G ++   E F++ + + GP WL I   +   A +  S+CK E+ V  P  I   S S 
Sbjct: 492  VFGANTPLFEQFVLWKNIMGPCWLKIED-ADFGALKNASYCKLEVQVTKPNLITPISDSD 550

Query: 545  HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SH 602
            ++ E PP+T+ +I ++TVFN +++  E+++ S      A+I   +  S+   P  L    
Sbjct: 551  NL-EAPPLTLMSIAMRTVFNVKENKQEVLAIS------ARIYQNISLSDTTPPERLPCQT 603

Query: 603  FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
            FTV+R  +G  FP+GF  E   +    G   L  + +E  +L+  +  L  +D DVLVGH
Sbjct: 604  FTVMRP-NGSHFPIGF--EGVVKQRSIGLVKLVKQENE--ILSYFLARLDSVDPDVLVGH 658

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIA 720
             + G D  +LL R Q  + P   WS+IGR++R + P    + G   F         + ++
Sbjct: 659  QLEGVDFSILLSRFQARKTPQ--WSRIGRMRRQQWPSSMGKMGGNFFAE------RTLMS 710

Query: 721  GRLLCDTF--LCSRDLLREVSYSLTQLAKTQLN-KDRKEVGPHDVLKMFQT-LESLMELI 776
            GRL+CD    +    + +  S++LT++    L+  +R+E+     LK + T  + LM+ I
Sbjct: 711  GRLMCDLANDMGKSTMTKCTSWTLTEMCSLYLSGTNRREIDNEAALKTWATNKDGLMDYI 770

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
             + E D +    L   + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI
Sbjct: 771  SHCEADTYFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYI 830

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
             PDK  +         +    VE+ N +E  N D               K+   Y GGLV
Sbjct: 831  CPDKAVF---------KGKQQVEEENADE-ENGDV--------------KKKDKYKGGLV 866

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----SPDGLVPHLPSSKTTGVLP 952
             EP+KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R    + +  VP +P  +  G+LP
Sbjct: 867  FEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRLNLSNDEDRVPEVPKDQDQGILP 926

Query: 953  ELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            +L+  LV RRR VK+ MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PL
Sbjct: 927  KLIATLVSRRRQVKSLMKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPL 986

Query: 1011 AELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
            A L T +GREILRST DL ++  +L+VIYGDTDS+MI++ +D+I  A A+     + VN 
Sbjct: 987  AVLTTYKGREILRSTKDLAESK-SLQVIYGDTDSVMINANVDNIQDALAVGNDFKKSVND 1045

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
             Y+ LEID+D +++R+LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV 
Sbjct: 1046 LYRLLEIDIDNVFRRILLQAKKKYAAINLVQVDGKFIDKMEVKGLDMKRREYCNLSKEVS 1105

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
               L++ILS    E V+  IH+ L ++   MR G V ++KY I   L K P+ YP+A N 
Sbjct: 1106 SQLLNEILSGDDSEAVITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAPKDYPNADNM 1165

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            P VQVALR    G        D + YI+  E  TS  +    A+R+  P ++ K D    
Sbjct: 1166 PQVQVALRELAKGKQV--RKDDVIAYIVTGEGKTSENA----AKRSFTPQDVMKRDSGLK 1219

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLL 1308
             D+++Y  +QI P V RLCA+I GT   RLADCLGLD  K+    + +  ++ +    L 
Sbjct: 1220 PDVEWYLYKQIFPPVERLCANISGTDTVRLADCLGLDARKYSINNNNSAGNNEAEIHPLE 1279

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D  R++    L L C SC + F    + +S            E    F    RC  
Sbjct: 1280 SQIDDSVRFKDSTRLTLRCRSCKAVFGFEGILNST-----------ENCSPFGIICRC-- 1326

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDA 1425
                     +S   I  Q++ Q       YY+G ++CDD+ C   T  +++   R +G  
Sbjct: 1327 ------GTTLSTLSIMTQLEHQIRQETCKYYEGWLVCDDQACGNRTRQMSVYGHRCLG-- 1378

Query: 1426 ERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ------RGIEKMEISAKIPLE 1479
             +G        C G++  +YTE  +Y QL YF  L D        RG EK  +SA     
Sbjct: 1379 PKGLA----QGCLGKMRYEYTEKMMYNQLLYFSSLFDVDKAKSNARGTEKELVSAL---- 1430

Query: 1480 KELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             E N+++       S V++  ++C   WV ++ +
Sbjct: 1431 AEHNRVK--FGTLKSVVEKYLDKCGRQWVAMDSL 1462



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 19 ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
          ASARA+  E L+ALR  G++  D+  Y +     +Y+ V E+ Y  +V R R +   F++
Sbjct: 5  ASARAKFAE-LRALRESGKKRLDT--YEVHQGEDLYEEVDEEGYKKVV-RNRLDQDDFVI 60

Query: 79 DDDGLGYGDEGQEEDW 94
          DD+G GY D+G+ EDW
Sbjct: 61 DDNGEGYADDGR-EDW 75


>gi|67539524|ref|XP_663536.1| hypothetical protein AN5932.2 [Aspergillus nidulans FGSC A4]
 gi|40738605|gb|EAA57795.1| hypothetical protein AN5932.2 [Aspergillus nidulans FGSC A4]
          Length = 2019

 Score =  624 bits (1609), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 500/1528 (32%), Positives = 756/1528 (49%), Gaps = 179/1528 (11%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
            ASARA+ L  L+ALR  G++   +  Y ++ +  IY+ V +D Y  ++ R R +   F+V
Sbjct: 2    ASARAK-LAELRALRAAGKKRLST--YEVEEQGDIYEEVDDDGYKKII-RNRLDEDDFVV 57

Query: 79   DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKP 134
            DD+G GY D+G+E  W+         SDD+ L  + ++ K++R E++ +KE  N  + K 
Sbjct: 58   DDNGEGYADDGREV-WNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKY 116

Query: 135  NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRR 194
              S   AAA   K +  A     A      D   +   +V+   + +    +++  R+ R
Sbjct: 117  FSS--GAAAPTPKPKPVATAEDDAFL---ADLLGEVDNNVVSNTVPKHNVVKSETRRKVR 171

Query: 195  SVSSNI--KSFVSVNSVK-TNSQLVT-----------NSTNSVKENSDL----------I 230
             +S  +  K+  S  ++K  NS  V            N    +  N D+          +
Sbjct: 172  ILSPPLSEKTRTSKPAIKDENSGPVPPVAEEPVLDMDNGDGPLDTNDDIPMSDTMPSSPV 231

Query: 231  NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKE-KVKDEVNEDVKECKKLNAKI 289
               V+ ++  +++E  E   + DN  E+ +     E K   V    +    + KK     
Sbjct: 232  TKAVERKSAVLIKEEPED--DDDNMMEVVQATGHDEAKAPSVNISGSRPPPKIKKQPYAT 289

Query: 290  STEKDPLLSAT---AGWKEVSGGNMVLDEGKSGLNCQESEFEVDD----DGSLPFYILDA 342
                 P+ SA    A W +V     VL+   S       +    D    DGSL F+ LD 
Sbjct: 290  PASSSPVKSAADVNASWNDVRNKLNVLNSPASTETRAFGKLRPQDVAEQDGSLRFFWLDY 349

Query: 343  HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
             E       G+L LFGKV  K   ++ S  V V ++ R +Y +P     +       E D
Sbjct: 350  TEV-----NGSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRETDEEVD 404

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
             E+                  +  E+   +  L V  + +    R+YAF    IP    Y
Sbjct: 405  MED------------------VYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEY 446

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
             LK+ YP+  P LP D KGE F  + GT++S  E F++ + + GP WL I + +   A  
Sbjct: 447  -LKLLYPYDKPALPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEE-ADFSAVN 504

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
              SWCK+E     P  I     S+++ + P +T+ ++  +T  N +++  EI+ AS    
Sbjct: 505  NASWCKFECQTSKPGLISPVPDSENL-DPPTLTLISLAFRTQLNVKENKQEILVAS---- 559

Query: 581  HKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
              A++   +  +E   P  L    FTV+R   G  +P+ F  E      + G+ +L  E 
Sbjct: 560  --ARVYENISLTETTPPEKLPCKTFTVMRPA-GSSYPVNFEAEI---RKQRGTYML--EK 611

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE+ LL++ +    ++D DVL+GH +   DL +LL R +  + P   W ++GRLKR E P
Sbjct: 612  SEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGEWP 669

Query: 699  K-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQL--NKD 753
            K   KG   F           +AGRL+CD    +    +++  S+SLT++    L     
Sbjct: 670  KNFNKGGGFFTE------RHLVAGRLVCDVANDMGKSLMMKCQSWSLTEMCDLYLGSGNG 723

Query: 754  RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            R+++     LK + T  + L+  + + +TD +    L+  L +L LT+ LTNI+GN W +
Sbjct: 724  RQDLDIDAALKTWATSKDGLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWAR 783

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G RA+R EY+LLH F   KYI PDK++    +K+ K            EE+  E   
Sbjct: 784  TLSGTRAERNEYILLHEFYKNKYICPDKYS----SKLQK-----------AEEIAQEGDE 828

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D        +         GGLV EP++GLYD+Y+L++DFNSLYPSIIQEYNICFTTV+
Sbjct: 829  DDATDKKKKDKY-------KGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVD 881

Query: 933  RSP------DGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
            R+       D  VP +P+S    G+LP L+  LV RRR VK  MK   A+  ++   D +
Sbjct: 882  RTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTK 941

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +LV++   L VIYGDTD
Sbjct: 942  QLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK-QLRVIYGDTD 1000

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI++ +D I+ A  +  ++   VN++YK LEID+D +++R+LL  KKKYAA+ +   D
Sbjct: 1001 SVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTEVD 1060

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G   + +E KGLDM RR++  LSKE     L++ILS    E V+  +H+ L ++  +MR 
Sbjct: 1061 GKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMRE 1120

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              + ++KYVI   L+K PE YP+ +  P  QVALR    G +      D + YI+    G
Sbjct: 1121 YTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKT--VRPNDVISYIVT--SG 1176

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             S  SS+  A+R+    ++ K D +   DI++Y  +QI P + RLCA I GT   RLA+C
Sbjct: 1177 DSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLAEC 1236

Query: 1284 LGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSCPSCS--STFDCPAV 1339
            LGLD  K+Q   + T S+  +    L   + D  R+     L L+C  C   S F+  A 
Sbjct: 1237 LGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGLAA 1296

Query: 1340 CSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
               +C        KP   +          CP       IS   I  Q++ Q     S YY
Sbjct: 1297 SIHMC--------KPTGLF----------CPNSSCGNPISTLTIIAQLESQIRAQTSKYY 1338

Query: 1400 KGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
            +G ++CD+ TC   T  +++   R +G   RG        C GR+  +Y+E  +Y QL Y
Sbjct: 1339 EGWLVCDESTCGNRTRQISVYGHRCLG--PRGQA----EGCLGRMAYEYSEKQMYNQLLY 1392

Query: 1457 FCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            F  L D  +        A+   EKE N+
Sbjct: 1393 FASLWDVDK--------ARAAAEKESNE 1412


>gi|336271345|ref|XP_003350431.1| hypothetical protein SMAC_02144 [Sordaria macrospora k-hell]
 gi|380090953|emb|CCC11486.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1482

 Score =  623 bits (1607), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 426/1262 (33%), Positives = 654/1262 (51%), Gaps = 150/1262 (11%)

Query: 301  AGWKEVSGG-NMVLDEGKSGLNCQESEFE--VDDDGSLPFYILDAHEQLSGANMGTLYLF 357
            A W E++   N+V      G +  + +++  +++DGSL  +  D  E       G+L LF
Sbjct: 313  ASWNEINQKLNVVSMSQSEGRSVGKIDYKDAIEEDGSLNMFWTDYTEV-----NGSLCLF 367

Query: 358  GKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
            GKV  K   T+ SC V V N+ R ++ +P           ++    E +    M      
Sbjct: 368  GKVLNKKTKTYVSCFVKVDNILRKLFFLPRK--------HRVRGGQETTEGVEM------ 413

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPA 475
                + +  E+   +  +NV  + +    R+YAF   ++P    Y LK+ YP+  P +  
Sbjct: 414  ----MDVYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKEGQY-LKLLYPYTKPAMEP 468

Query: 476  DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDS 533
              +GE F  + GT+++  E F++ + + GP WL I  + F+S    +  S CK E+ V+ 
Sbjct: 469  TTQGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTSL---RNASHCKLEVRVEH 525

Query: 534  PKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
            P  + V  + + + E PP+T+ ++ ++T FN + +  EI+S S     +   D  +  + 
Sbjct: 526  PMMVSVPDNVESI-EPPPLTLLSLAMRTAFNPKDNKQEILSVS----GRVYFDVSLSDTT 580

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
                     FT VR   G  FP+GF   A +R    G  VL     E  +LN L+ ++  
Sbjct: 581  PADKLASRSFTAVRPY-GSAFPIGFETLAKER----GRGVLKLFKQEHEILNFLLAQIDV 635

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGSGA 711
            +D DV++GH + G D  +LL+R    +  +  WS++GRL+RS+ P    + G  +F   A
Sbjct: 636  VDPDVILGHQLEGVDYSILLNRLHEKK--THQWSRLGRLRRSQWPSSIAKMGGNVF---A 690

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKD--RKEVGPHDVLK 764
               IMS   GRLLCD    + D  + V     ++SLT++    L  +  R+++     LK
Sbjct: 691  ERQIMS---GRLLCD---LANDAGKSVMTKCQNWSLTEMCSLYLGGETPRRDIDNEVALK 744

Query: 765  MFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
             +   +   LM+ I + ETD +    L     +LPLT+ LTN++GN W +TL G RA+R 
Sbjct: 745  TWANADKHGLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERN 804

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            EY+LLH F   KY+VPDK T+    ++ ++ +                            
Sbjct: 805  EYILLHEFHRNKYVVPDKQTFKGRQRIEEENA-----------------------EEEGG 841

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGL 938
               K+   Y GGLV EP+KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R+     D  
Sbjct: 842  EGAKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTSLSEDDDA 901

Query: 939  VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYG 996
            VP +P  +  G+LP+L+  LV RR+ VK+ MK   A+  ++   DI+Q ALKLTANSMYG
Sbjct: 902  VPEVPKEQAQGILPKLIATLVSRRKQVKSLMKDKNATPEELATWDIKQLALKLTANSMYG 961

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLG++ SRFYA+PLA L T +GREILRST +L ++N +L+VIYGDTDS+MI++  D++A 
Sbjct: 962  CLGYTKSRFYARPLAVLTTYKGREILRSTKELAESN-SLQVIYGDTDSVMINANKDNVAD 1020

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK-VQFKDGMPYEVIERKGL 1115
            A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+  VQ  D    E +E KGL
Sbjct: 1021 ALRVGHEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINMVQVNDKW-VEKMEVKGL 1079

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            DM RR++  LSKE+ +  L++ILS    E  V+ IH  L  +   MR G V ++KY+I  
Sbjct: 1080 DMKRREYCGLSKEISNRILTEILSGDDTEVSVQRIHEYLRDISAKMREGAVPVQKYIILT 1139

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             L K P+ YP+A + P VQVALR    G +     GD + YI+    G S  +S  +A+R
Sbjct: 1140 QLGKAPKDYPNADSMPQVQVALRELAKGKT--IRKGDVIAYIVT---GDSKTTSEAVAKR 1194

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP 1295
            A  P ++ K +     D+++Y  +QI P V RLCA+I GTS  +L + LGLD  ++ S  
Sbjct: 1195 AYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLTENLGLDVRRYSSNT 1254

Query: 1296 SETMSSDPSS----SLLFAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSSICMSVSE 1349
            +   SS P       L   + D  R++ C  L L C  C  SS F+  A  SS+    + 
Sbjct: 1255 NNNNSSGPQDLEIHPLESQIPDSLRFQSCARLSLRCRRCKTSSPFEGLASPSSVN---NV 1311

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDE 1408
             PS           ++CP C        + P + +  QV+       + YY+G ++CDD 
Sbjct: 1312 TPS----------GIQCPSC------QYVLPTISVVAQVEAAVRAQTARYYEGWLVCDDS 1355

Query: 1409 TCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
            +C   T  ++  + G    G+       C GR+  +Y+E D+Y QL YF  L D  +   
Sbjct: 1356 SCGNRTRQIS--VYGTRCLGSKGLARGECGGRMRYEYSERDIYNQLVYFASLWDVDKAKR 1413

Query: 1469 K-----------------MEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLN 1511
            K                  E   ++ +  E N++R         V+   ++C   WV + 
Sbjct: 1414 KAKGNNDEDGDADAAKLSAEEKERVAIMAERNRVR--FGTVKGVVENYLDKCGRRWVAMG 1471

Query: 1512 DI 1513
             +
Sbjct: 1472 TL 1473



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 37  RRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV 96
           R+SG    Y++   + +Y+ V E++Y  +V R R     F+VDD+G GY D+G+EE W  
Sbjct: 18  RQSGKKKSYDVGEVDELYEEVDENQYKKIV-RDRLNEDDFVVDDNGEGYADDGREE-WD- 74

Query: 97  AGLPSSSDDE----SLDGQ--RSIKKQRIEKRGKKENN 128
             LP   DD      L G   R  KKQ+ ++  K++ N
Sbjct: 75  -RLPQYQDDSEEELGLPGSKPRKSKKQKEQEDAKRDAN 111


>gi|440636669|gb|ELR06588.1| DNA polymerase alpha subunit A [Geomyces destructans 20631-21]
          Length = 1445

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 419/1209 (34%), Positives = 628/1209 (51%), Gaps = 126/1209 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            +D DGSL  +  D  E       G+L LFGKVK   T  + SC + V N+ R V+ +P  
Sbjct: 331  IDGDGSLNMFWTDYTEV-----HGSLCLFGKVKNKKTGEYVSCFLKVDNILRKVFFLPRD 385

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVAL-GLKTEIANQLLNLNVSNYIVSPVKR 445
             L++                     R+  ++V +  +  E+ + +  + V  + + P  R
Sbjct: 386  NLYKHG-------------------RETSEEVGMEDVYKEVDSIMTRMKVGMHKIKPCSR 426

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            +YAF   ++P  E   LK+ YP+  P LP DL G+ F    GT++S  E F++ + V GP
Sbjct: 427  KYAFELEDVP-NEGEYLKLLYPYNKPALPIDLTGDTFSHTFGTNTSIFEQFVLWKNVMGP 485

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL I   +        S CK E+ V +P  I   + S  + E PP+T+ ++ ++T  N 
Sbjct: 486  CWLKIED-ADFTFLNNASHCKLEVQVTTPNLITPLTESDSM-EPPPLTLMSLAIRTTLNA 543

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            + +  EI++ S        +     A +          T++R + G  FP+GF      +
Sbjct: 544  KDNKQEILAISARIYENISLSDTTPAEQIPS----RTITIIRPV-GSSFPLGFEDLIKKK 598

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
            N   G   LC +  E  +L+  + +L ++D DV++GH + G D  +LL R Q  + P   
Sbjct: 599  NR--GLVKLCRQEPE--ILSFFLAQLDRVDPDVILGHQLEGVDYSILLSRLQTRKTPG-- 652

Query: 686  WSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
            WS+IGR KRS+ P    + G   F         S I+GRLLCD         + +  S+S
Sbjct: 653  WSRIGRFKRSDWPGSMGKIGGNFFAE------RSLISGRLLCDLANDAGKSTMTKCQSWS 706

Query: 742  LTQLAKTQL---NKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLP 797
            LT++    L   N  R+EV     LK +  T + L+  I + E D +    L   + +LP
Sbjct: 707  LTEMCNLYLSSGNNVRREVDNEVALKTWACTRDGLVAYIGHCEADTYFIAALALKVQMLP 766

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LT+ LTN++GN W +TL G RA+R EY+LLH F   KYIVPDK  +    K  +Q     
Sbjct: 767  LTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYIVPDKAPFKGRPKTEQQ----- 821

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                            D D   +  +K K    Y GGLV EP+KGLYDK++L++DFNSLY
Sbjct: 822  ----------------DQDEEGDVKKKDK----YKGGLVFEPEKGLYDKFVLVMDFNSLY 861

Query: 918  PSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--T 971
            PSIIQEYNICFTTV+R+     +  VP +P  +  G+LP+L+  LV RRR VK+ MK  +
Sbjct: 862  PSIIQEYNICFTTVDRTTLSDDEEKVPEVPVDQDQGILPKLIATLVGRRRQVKSLMKDRS 921

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++
Sbjct: 922  ATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAES 981

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
              +L+VIYGDTDS+MI++ +D++  A  +  +  + VN +YK LEID+D +++R+LL  K
Sbjct: 982  K-SLQVIYGDTDSVMINANVDNVTDAFKVGHEFKRAVNDRYKLLEIDIDHVFRRILLQAK 1040

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            KKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L++ILS    E V+  IH
Sbjct: 1041 KKYAAINLLEVDGKFIEKMEVKGLDMKRREYCALSKEVSSKLLNEILSGEETEIVITRIH 1100

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
            + L ++   MR   + L+KY I   L K P+ YP+A + P VQVALR    G +      
Sbjct: 1101 DYLREISGKMREDLIPLQKYTIYTKLGKNPKDYPNADSMPQVQVALRELARGKTV--RKD 1158

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D + YI+    G    ++   A+R+  P ++ K D +   D ++Y  +QI P V RLCA+
Sbjct: 1159 DVIAYIVT---GDGKSANELAAKRSYTPADVMKADSELKADAEWYLYKQIFPPVERLCAN 1215

Query: 1272 IEGTSPERLADCLGLDPSKF--QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS 1329
            I GT   RLADCLGLD  K+   +  S   ++     L   + DE R++    L LSC  
Sbjct: 1216 ILGTDSMRLADCLGLDVRKYSINNNVSSGGTATEIHPLESQIEDEVRFKDAARLQLSCRV 1275

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKR 1389
            C  TF    +  S+    S  P+           + C +C        +    +  Q++ 
Sbjct: 1276 CKGTFGFEGLLGSLD---SCSPN----------GIMC-RC-----GATLRNLAVVAQLEH 1316

Query: 1390 QADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYT 1446
            +     + YY+G ++CDD+ C   T  +++   R +G    G        C GR+  +Y+
Sbjct: 1317 KIRQETARYYEGWLVCDDQACGARTRQMSVYGHRCLGPRGLGQ------GCLGRMGYEYS 1370

Query: 1447 EADLYKQLTYFCHLLDTQRGIEKMEISAK--IPLEKELNKIRPVVALAASTVQRIRERCA 1504
            E  +Y QL YF  L D ++  EK   + +  +    E N++R         V+R  ++C 
Sbjct: 1371 EKAMYNQLLYFSSLFDVEKAREKCGGTDRDLVLALGEHNRVR--FDTLKGVVERYLDKCG 1428

Query: 1505 YGWVKLNDI 1513
              WV ++ +
Sbjct: 1429 RQWVAMDSL 1437



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           SAR+  L  L+ALR  G++  D+  Y +  E  +Y+ V ED Y  ++ R R     F++D
Sbjct: 4   SARSSKLAELRALRESGKKRLDT--YEVHQEEDLYEEVDEDGYKKVI-RDRLNQDDFVID 60

Query: 80  DDGLGYGDEGQEEDWS-VAGLPSSSDDESL---DGQRSIKKQRIEKRGKKEN 127
           D+G GY D+G+ EDW    G  S S++E+       ++ K++R E + K+EN
Sbjct: 61  DNGEGYADDGR-EDWDRRQGYDSESEEEARPKGKNGKAAKRKREEDKTKREN 111


>gi|46122087|ref|XP_385597.1| hypothetical protein FG05421.1 [Gibberella zeae PH-1]
          Length = 1494

 Score =  621 bits (1601), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 422/1220 (34%), Positives = 645/1220 (52%), Gaps = 143/1220 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            +++DGSL F+  D  E       G+L+LFGKV  K   ++ SC V V N+ R +Y +P  
Sbjct: 333  IEEDGSLNFFWTDYTEL-----NGSLFLFGKVLNKKTKSYVSCFVKVDNILRKLYFLPRE 387

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               Q  E     +  EE  +             + +  EI   +  +NV  Y +    R+
Sbjct: 388  HRMQDGE-----ETGEEVEM-------------MQVYDEIDTMMTKMNVGMYKIKACTRK 429

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y +K+ YP+  P +  +  GE +  + G+++S  E F++ + + GP 
Sbjct: 430  YAFELRDVPKEAQY-MKLLYPYNKPEIDPNRPGETYSHVFGSNTSLFEQFVLWKNIMGPC 488

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +     +  S CK E+  D P  + V S S ++ + PP+T+ +++L+T FN++
Sbjct: 489  WLKIED-ADFDKLKNASHCKLEVVADHPNMVSVLSESDNL-DAPPLTLMSVSLRTAFNEK 546

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI+S S     K  +     A   K P     FTV+R   G  FP+GF++ A  RN
Sbjct: 547  DNKQEILSISARIYEKVSLADTTPAE--KLP--CRTFTVIRP-HGQSFPLGFDQLAKKRN 601

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++  +  E  +L   + ++   D DV++GH + G D  VLL+R    ++P   W
Sbjct: 602  R----GLIVLKKQEADILAFFLAQVDVADPDVILGHQLEGVDYSVLLNRLHEKKIPG--W 655

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD-----LLREVS 739
            S++GRL+R++ P    + G  +F           ++GRL+CD    + D     +L+  S
Sbjct: 656  SRLGRLRRTQWPASIGKTGGNVFAE------RQILSGRLMCD---LANDAGKSVMLKCQS 706

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L+ D  R+E      LK + +  + L++ I + E D      L   + +L
Sbjct: 707  WSLTEMCSLYLSGDNRRREFDNEVALKTWAKEKQGLLDYITHMEADTHYIAALALGVQML 766

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+      ++QR+  
Sbjct: 767  PLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFYRNKYICPDKQTF-----RSRQRA-- 819

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                        E+A  + +T+    +       Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 820  ------------EEAQREGETAEGKKKD-----KYKGGLVFEPEKGLYDKFVLVMDFNSL 862

Query: 917  YPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-- 970
            YPSIIQE+NICFTTV+R      D  VP +P+++  G+LP L+  LV RRR VK+ MK  
Sbjct: 863  YPSIIQEFNICFTTVDRPDTKEGDDEVPEVPTNQDQGILPRLIATLVSRRRQVKSLMKDK 922

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 923  KATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTKELAE 982

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++YK LEID+D +++R+LL  
Sbjct: 983  SN-SLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYKLLEIDIDNVFRRILLQA 1041

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L++ILS    E  +  I
Sbjct: 1042 KKKYAAINLVEKDGKFIEKMEIKGLDMKRREYCALSKEISQHLLNEILSGDDTEVSIARI 1101

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H  L ++   MR   + ++KY+I   L K P+ YPD+ + P VQVALR    G +     
Sbjct: 1102 HEYLNEIAGKMREQSIPVQKYIIHTQLGKAPQDYPDSNSMPQVQVALREMAKGKT--VRK 1159

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD + Y+I  +    S SS    +RA  P +L K D   + D+++Y  +QI P V RLCA
Sbjct: 1160 GDVIAYVITGD----SNSSEPAPKRAYTPGDL-KADSSLLPDVEWYIGKQIFPPVERLCA 1214

Query: 1271 SIEGTSPERLADCLGLDP---SKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
            +I GTS  +LA+ LGLD    S FQ++ + + +      L   + DE R+  C  L L C
Sbjct: 1215 NIVGTSTSQLAEQLGLDIKRYSSFQTQQNSSSNDLEIHPLDSQIPDEVRFGDCTRLSLRC 1274

Query: 1328 PSCS--STFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
              C   STF+  A       +  E+ S+          + C  C        +S   +  
Sbjct: 1275 RKCKALSTFEGLA-------ATPERVSQ--------SGILCSSC-----GTLVSTLSVVA 1314

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGR 1440
            Q++       S YY+G ++CDD  C   T  +++        G+ C   P+     C GR
Sbjct: 1315 QMEHAIRTQTSRYYEGWLICDDTQCGNRTRQMSV-------YGSRCLG-PKGLARDCLGR 1366

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS-------AKIPLEKELNKIRPVVALAA 1493
            +  +YTE  +Y QL YF  L D  +   K  I+         I    E N++R       
Sbjct: 1367 MRYEYTEKAIYTQLLYFASLWDVDKAKTKAAITEMSRPDRENILALAEHNRVR--FGNIK 1424

Query: 1494 STVQRIRERCAYGWVKLNDI 1513
              V +  ++C   WV ++ +
Sbjct: 1425 GVVDKYLDKCGRQWVAMDTL 1444



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 8/105 (7%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  LKALR  G+++ D+  Y +   + +YD V ED Y  +V R R     F+VDD+G GY
Sbjct: 7   LAELKALRASGKKAFDN--YKVADVDDLYDEVDEDGYKKVV-RERLNQDDFVVDDNGEGY 63

Query: 86  GDEGQEEDWS-VAGLPSSSDDES-LDGQ--RSIKKQRIEKRGKKE 126
            D+G+ EDW  V    S S++E+ + G+  ++ KK R E++ K++
Sbjct: 64  ADDGR-EDWDRVQAYESDSEEEAGVRGRPSKAAKKSRQEEQTKRD 107


>gi|358397908|gb|EHK47276.1| hypothetical protein TRIATDRAFT_282724 [Trichoderma atroviride IMI
            206040]
          Length = 1468

 Score =  621 bits (1601), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 430/1229 (34%), Positives = 638/1229 (51%), Gaps = 159/1229 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL F+  D  E       G+L LFGKV  K   ++ SC V V N+ R +Y +P  
Sbjct: 338  IEADGSLNFFWTDYTEI-----NGSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLPR- 391

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG-LKTEIANQLLNLNVSNYIVSPVKR 445
                     +  +D EE+           +DV +G +  E+   +  +NV  + +   +R
Sbjct: 392  --------QQRVRDGEETG----------EDVDMGDVYNEVDEIMTKMNVGMFKIKKCER 433

Query: 446  RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            +YAF  A+IP   +Y +K+ YP+  P L  D+KGE F  + GT+++  E F++ + + GP
Sbjct: 434  KYAFELADIPKEADY-MKLLYPYTKPTLNMDVKGETFSHVFGTNTALFEQFVLWKNIMGP 492

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL I   +   A +  S CK E+  + P  +     S ++ E+PP+T+ +I L+T FN 
Sbjct: 493  CWLKIQD-ADFGAIKNASHCKLEVLAEHPNMVTAIPDSDNM-EMPPLTLMSIALRTAFNA 550

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS--HFTVVRKLDGGIFPMGFNKEAT 623
            +++  E+++ S      A+I   +L S+      L    FTV+R   G  FPMGF+    
Sbjct: 551  KENKQEVLAIS------ARIYDKVLLSDTTPAEKLPCRTFTVIRP-HGQAFPMGFDTLVK 603

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
             RN      ++  +  E  +L+  + ++   D DV++GH + G D  VLL+R  +    +
Sbjct: 604  KRNR----GLVVLKKQESDVLSFFLAQVDVADPDVILGHQLEGVDYSVLLNR--LFEKKT 657

Query: 684  SMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCD---------TFLCSR 732
              WS++GRL+RS+ P    + G  +F           +AGRLLCD          F C  
Sbjct: 658  HQWSRLGRLRRSQWPSAIGKVGGNVFAE------RQVMAGRLLCDLANDAGKSAMFKCQ- 710

Query: 733  DLLREVSYSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMEL 789
                  ++SLT++    L  D  R++V     L  + +  + LM+ + + E D      L
Sbjct: 711  ------TWSLTEMCSLYLTGDNRRRDVDNEVALNTWAKESQGLMDYVTHMEADTHYIAAL 764

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
               + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+    K 
Sbjct: 765  AVSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFYRNKYICPDKQTFKGRQKA 824

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
             ++      E +  ++                             LV EP+KGLYDK++L
Sbjct: 825  EEENDEEAGEGKKKDKYKGG-------------------------LVFEPEKGLYDKFVL 859

Query: 910  LLDFNSLYPSIIQEYNICFTTVERSP----DG-LVPHLPSSKTTGVLPELLKNLVQRRRM 964
            ++DFNSLYPSIIQEYNICFTTV+R+     DG  VP +P ++  G+LP L+  LV RRR 
Sbjct: 860  VMDFNSLYPSIIQEYNICFTTVDRTTSADDDGDAVPEVPVNQDQGILPRLIATLVSRRRQ 919

Query: 965  VKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            VK+ MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL
Sbjct: 920  VKSLMKDKKATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAILTTHKGREIL 979

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            RST DL ++  +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++Y+ LEID+D +
Sbjct: 980  RSTKDLAESK-SLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNV 1038

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            ++R+LL  KKKYAA+ +  KDG   E +E KGLDM RR++  LSKEV    L +ILS   
Sbjct: 1039 FRRILLQAKKKYAAINLIEKDGKFIEKMEVKGLDMKRREYCALSKEVSKHLLDEILSGDD 1098

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             E  V  IH  L +    MR   V + KY I   L K P+ YP+A + P VQVALR    
Sbjct: 1099 IEVAVARIHEYLRETATKMREFTVPVPKYTIYTQLGKGPKEYPNADSMPQVQVALRDLAR 1158

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G +     GD + YI+    GTS  SS    +RA  P +L K D     D+D+Y ++QI 
Sbjct: 1159 GKTV--RKGDVISYIVT---GTSQ-SSEPAPKRAYAPPDL-KADPNLQPDVDWYIAKQIF 1211

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRG 1319
            P V RLCA+I GTS  +LA+ LGLD  ++ S  ++  SS        L   + DE R+  
Sbjct: 1212 PPVERLCANIAGTSTSQLAEQLGLDVRRYSSTQTQQNSSSDDLEIHPLESQIPDEVRFVD 1271

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            C+ L L C  C ++     V   +  S     +   T         CP C      G + 
Sbjct: 1272 CKRLSLRCRKCKAS----TVFEGLMGSADRVTASGVT---------CPGC------GAVI 1312

Query: 1380 PGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-- 1436
            P + +  QV+       S YY+G ++C+D  C   T  +++        GT C   P+  
Sbjct: 1313 PTLSVVAQVEHAVRLQTSQYYEGWLVCNDPQCGNRTRQMSV-------YGTCCLG-PKGL 1364

Query: 1437 ---CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM-----EISA----KIPLEKELNK 1484
               CNG +  +YTE  +Y QL YF  L D  +   +      EIS     KI    E N+
Sbjct: 1365 ARDCNGTMHYEYTEKAIYNQLVYFASLWDVDKAKTRAADTTNEISTQEREKIRALAEHNR 1424

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            +R       + V +  ++C   WV ++ +
Sbjct: 1425 VR--FTTVKTAVDKYLDKCGRQWVAMDTL 1451



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  LKALR+ G+++ +S  Y ++  + +YD V E  Y  +V R R     F+VDD+
Sbjct: 6   RRAKLAELKALRQAGKKAFES--YQVEDADNLYDEVDEAGYKKIV-RERLNQDDFVVDDN 62

Query: 82  GLGYGDEGQEEDWS-VAGLPSSSDDESLDGQ----RSIKKQRIEKRGKKENN 128
           G GY D+G+ EDW  V    S S+ E L  +    ++ KK   +++ K++ N
Sbjct: 63  GEGYADDGR-EDWDRVRQYESDSEGEGLPARGRPSKASKKSLQDEQAKRDAN 113


>gi|71841810|gb|AAZ43188.1| DNA polymerase alpha [Euplotes aediculatus]
          Length = 1404

 Score =  621 bits (1601), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 416/1250 (33%), Positives = 641/1250 (51%), Gaps = 135/1250 (10%)

Query: 305  EVSGGNMVLDEGKSGLNCQESEFEVDD---------DGSLPFYILDAHEQLSGANMGTLY 355
            +V  G++ +++    +N +      DD         D +L  + +D HE+    N   +Y
Sbjct: 240  KVFDGDVEMEDVSEHMNTEPLNLSTDDKKRPLPLNSDNTLSVFWIDGHEEX--INQSEVY 297

Query: 356  LFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRK 413
            LFGK+   S   + S C+VVK + R +Y +P   +   D   ++ K  EE       F+ 
Sbjct: 298  LFGKIYDSSVKKYSSICLVVKGINRVLYCVPKEGVSIGDVHTEISKLFEERFKYIKKFKS 357

Query: 414  KLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPL 473
            K                           P ++ Y F +  +  G+N VL+I Y  +   L
Sbjct: 358  K---------------------------PAEKNYCF-ETPLKKGKNSVLEIRYSSEYATL 389

Query: 474  PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDS 533
            P +L G+ F  + G ++S LEL +++ K+ GP WL++ K        + SWC YE+ VD 
Sbjct: 390  PPNLTGKTFQHIFGKNTSVLELLIIQLKLMGPCWLTV-KNPKVNTQVKKSWCDYEVIVDV 448

Query: 534  PKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
            P +I+ +   K+    P + V ++ +K+  N ++ V E+   S +   K   D  +  +E
Sbjct: 449  PSNIQCTIEDKNRPS-PTIKVLSLGMKSCKNAKK-VKEVYMISGLIHEKVDCDKQIQNAE 506

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
                     F++VRKLD    P G  +E      K  S V+   ++E+A+L   + ++  
Sbjct: 507  ----KGYRXFSLVRKLDNFPLPFGLKEEM----DKVKSLVVNTFTNEKAMLEAFITKVSL 558

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGAS 712
            +D D++V H +     D L+ R +  +V  +MWS+IGR KR+++PKL RK  +  G    
Sbjct: 559  IDPDMIVAHGLCEGFFDTLIDRIEKNKV--NMWSRIGRFKRTQVPKLNRKDGSSIGGFWM 616

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESL 772
            P    C  GRL+CDTFL SR+L+RE +Y LT+LA+TQ  K R+E   + +   ++    L
Sbjct: 617  P--RQCTVGRLICDTFLSSRELIRETNYDLTELARTQFGKQREEFDSNLLPNFYKKSNEL 674

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
            +  I + E DA+ +++L+F LS+ PLT+QLTNI+GNLW ++L  A A+R E LLLH F  
Sbjct: 675  LNAILHTEKDAFFTVQLLFKLSIXPLTKQLTNIAGNLWFRSLXNAXAERNEMLLLHEFNR 734

Query: 833  KKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYA 892
            K +I PDK                   + N + L N+D   + +    ++ K K+  AY 
Sbjct: 735  KNFICPDK-------------------EYNKKPLKNQDEEKEEEDDDENYGKRKKA-AYE 774

Query: 893  GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----SPDGL---------- 938
            GGLVL+PK GLYDK +LLLDFNSLYPSIIQEYN+CFTTVER      DG           
Sbjct: 775  GGLVLDPKPGLYDKIVLLLDFNSLYPSIIQEYNLCFTTVERCVTHDFDGREISDAKIDEV 834

Query: 939  -VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYG 996
             VP L   + + +LP +LK LV++ ++ K  MK      K+ QL+I+Q+ALKLTANSMYG
Sbjct: 835  DVPILGEQQESAILPSILKMLVKQEKISKDQMKVEKDKGKLDQLEIKQKALKLTANSMYG 894

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLGFS+SRFYAK +A LIT++GR+ L++T D+  N L   V+YGDTDSIM+ +G +++  
Sbjct: 895  CLGFSSSRFYAKAIAALITRKGRDALKATYDIANNILGYNVVYGDTDSIMVSTGSNNLKD 954

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGL 1115
            A  I  ++ +EVNKKYK LEI+LDG+++  LLLKKKKYAA+  +   D   +   E KGL
Sbjct: 955  AILIGDEIKKEVNKKYKHLEIELDGVFRSPLLLKKKKYAALVYEDLNDPNSFRKKEVKGL 1014

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
             MVRRDW  LSK +G++ L +ILS +S +    ++      + + +++ ++ ++ ++ITK
Sbjct: 1015 XMVRRDWCPLSKAIGNYVLGEILSSKSQDXXQINLRAYFTDMXDKLKNNEIKMKDFIITK 1074

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRL-KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
             LT+PP  Y +    PHV +A R+ K+   S        +PYIIC       G +   AQ
Sbjct: 1075 QLTRPPSEYNNPDTFPHVVIANRMIKEQSKSANELTSMYIPYIIC------QGEAKQYAQ 1128

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RA  P+E++K  G   ID D+Y SQQI+P +SRL   IEG     + +C GLD  K    
Sbjct: 1129 RAYLPEEIQKAQGNLQIDYDWYLSQQIYPPISRLIEHIEGIDGRFICECFGLDAKKHAGM 1188

Query: 1295 PSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP 1354
                   +          +EE Y   +   L         +     +   ++    P  P
Sbjct: 1189 AGRNSVENK---------EEETY---QQKFLDVAKNKDNLEKYIGLTKYKLT-KRVPGDP 1235

Query: 1355 ETEYNFWRTLRCP--KCPEEVEAGRISP--------GMIANQVKRQADGFVSMYYKGLMM 1404
             +EY  +  +  P  K  ++  +G I            I N++K      +  YY+G  +
Sbjct: 1236 SSEYEAFPGVLHPGGKNFDQFLSGLIDKKTGKPLPDSYIKNRIKLLIKDMMRDYYEGRYV 1295

Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRL-VRKYTEADLYKQLTYFCHLLDT 1463
            C +E+CK  T     R + +  +  V    P CN  L   K  E  +     Y   L D 
Sbjct: 1296 CCEESCKQET-----RTLHEPNKCVV----PHCNSXLKAAKVNEKGVTDTFNYLERLFDA 1346

Query: 1464 QRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            ++  +  +   +I +E+ L     +       +  IR+  AY  + L+ +
Sbjct: 1347 EKVKKNTKAQNEI-IEEALIDHMNIFKKIKEKISLIRQSNAYDKINLSQV 1395


>gi|115384642|ref|XP_001208868.1| hypothetical protein ATEG_01503 [Aspergillus terreus NIH2624]
 gi|114196560|gb|EAU38260.1| hypothetical protein ATEG_01503 [Aspergillus terreus NIH2624]
          Length = 1460

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1217 (34%), Positives = 638/1217 (52%), Gaps = 131/1217 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL  + +D  E       G+L LFGKVK   T    S  V V N+ R +Y +P  
Sbjct: 337  VEEDGSLRMFWIDFTEV-----NGSLCLFGKVKNKHTGSFASAFVKVDNILRKLYFLPRE 391

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +       E D E+                  + +E+   +  L V  + + P  R+
Sbjct: 392  NRVKHGRETDEEVDMED------------------VYSEVDEMMSRLRVGMHKIKPCTRK 433

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    IP    Y LK+ YP+  P LP D+KGE F  + GT++S  E F++ + + GP 
Sbjct: 434  YAFEIPGIPREAEY-LKLLYPYDKPALPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPC 492

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I + +   A    SWCK+E  V  P  I     S+++ + PP+T+ +++ +T  N +
Sbjct: 493  WLKIEE-ADFSAVNNASWCKFECQVSKPGLISPVVDSENL-DAPPLTLMSLSFRTQLNVK 550

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
            ++  EI+ AS      A++   +  +E   P  L    FTV+R + G  +P+ F  EA  
Sbjct: 551  ENKQEILVAS------ARVYENVSLTETTPPEKLPCKTFTVMRPV-GSSYPVHF--EAET 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            R  + G+ +L  E SE+ LL++ +    K+D DVL+GH +   DL +LL+R +  + P  
Sbjct: 602  RKQR-GTYML--EKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSILLNRLKEKKTPG- 657

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W ++GRLKR E PK   +G   F           IAGRL+CD    +    +++  S+S
Sbjct: 658  -WHRLGRLKRGEWPKNFNRGGGFFAE------RHLIAGRLMCDVANDMGKSLMMKCQSWS 710

Query: 742  LTQLAKTQLNK--DRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++    L +   R+E+     LK + T  + LM  + + + D +    L+  L +LPL
Sbjct: 711  LTEMCDLYLGQGNTRQEIDCEAALKTWATTKDGLMNFVNHCDADTYFVAALVLRLQMLPL 770

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTNI+GN W +TL G RA+R EY+LLH F   KYI PDK++    +++  Q++   +
Sbjct: 771  TKVLTNIAGNSWARTLSGTRAERNEYILLHEFHRNKYICPDKYS----SRL--QKAEEKI 824

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            +D + E+  ++                         LV EP+KGLYDK++L++DFNSLYP
Sbjct: 825  QDGDEEDGVDKKKKDKYKGG----------------LVFEPEKGLYDKFVLVMDFNSLYP 868

Query: 919  SIIQEYNICFTTVERSPDG------LVPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKT 971
            SIIQEYNICFTTVER+          VP +P+S +  G+LP L+  LV RRR VK  MK 
Sbjct: 869  SIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREVKKLMKD 928

Query: 972  --ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              A+  ++   D +Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +LV
Sbjct: 929  KRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELV 988

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            ++   L VIYGDTDS+MI++ +D I+ A  +  ++ + VN++Y+ LEID+D +++R+LL 
Sbjct: 989  ESK-QLRVIYGDTDSVMINTNMDTISDALKVGDELKKVVNERYRLLEIDIDNIFRRLLLH 1047

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYAA+ +   DG   + +E KGLDM RR++  LSKE     L+++LS    E V++ 
Sbjct: 1048 AKKKYAAINITEVDGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEVLSGEDQELVLDR 1107

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            +H  L  +   MR   V ++KYVI   L+K PE YP+ ++ P VQVALR    G S    
Sbjct: 1108 VHEYLRDLAHKMREYTVPVQKYVIYTKLSKRPEEYPNKESMPPVQVALRELARGKSV--R 1165

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
              D + YI+    G S  SS+  A+R+    ++ K D     DI++Y  +QI P + RLC
Sbjct: 1166 PNDVISYIVT--NGDSETSSLPPAKRSYTLQDVMKSDNGLKPDIEFYLLKQIFPPIERLC 1223

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPLILSC 1327
            A I GT   RLA+CLGLD  K+Q   S   +   +    L   + D  R++    L L+C
Sbjct: 1224 APIPGTDAVRLAECLGLDVRKYQINNSSGGNQQNTDIFPLESQIPDSVRFQNAARLTLTC 1283

Query: 1328 PSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
              C   S F+     S +C         P              CP E    + S   +  
Sbjct: 1284 RFCKEKSVFEGLVTSSHMC--------NPHGIV----------CPNESCQKQFSVLTVVA 1325

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q     S YY+G ++CDD  C   T   ++   R +G   RG    +   C GR+ 
Sbjct: 1326 QLESQIRAQTSKYYEGWLVCDDSACGNRTRQTSVYGHRCLG--PRG----HAEGCLGRMT 1379

Query: 1443 RKYTEADLYKQLTYFCHL--LDTQRGIEKMEISAK----IPLEKELNKIRPVVALAASTV 1496
             +Y+E  +Y QL YF  L  +D  R   + E S +    +    E N++R         V
Sbjct: 1380 YEYSEKQMYNQLLYFAGLWDVDKARAAAQKEASGEKKDSVAALAEFNRVR--FGTVKGVV 1437

Query: 1497 QRIRERCAYGWVKLNDI 1513
                ++C   WV+++++
Sbjct: 1438 DGYLKKCGRQWVEMDNL 1454



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 21/138 (15%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           +S RA+ L  L+ALR  G++   +  Y I+ +  IY+ V ++ Y  ++ R R +   F+V
Sbjct: 2   SSHRAK-LAELRALRAAGKKRLST--YEIEEQGDIYEEVDDEGYKKVI-RDRLDEDDFVV 57

Query: 79  DDDGLGYGDEGQEEDWS--VAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKE--------- 126
           DD+G GY D+G+E  W+   AG    S+D+ L  + ++ K++R E++ ++E         
Sbjct: 58  DDNGAGYADDGREV-WNEPTAGYYDDSEDDELPARGKAAKRKREEEKQRQEKINNGISKY 116

Query: 127 ----NNQNVRKPNPSLTA 140
               N     KP P +TA
Sbjct: 117 FNKGNATTTSKPKPVVTA 134


>gi|24648780|ref|NP_536736.2| DNA polymerase alpha 180kD [Drosophila melanogaster]
 gi|45644974|sp|P26019.2|DPOLA_DROME RecName: Full=DNA polymerase alpha catalytic subunit
 gi|23171902|gb|AAF55908.2| DNA polymerase alpha 180kD [Drosophila melanogaster]
          Length = 1488

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 426/1169 (36%), Positives = 627/1169 (53%), Gaps = 115/1169 (9%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVV 372
            D+ +  +   E +  +  D  L F+  +A+E      M G ++LFG+   G    S C+ 
Sbjct: 341  DDFEKSVLTTEQDSTISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLR 395

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V+N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL  
Sbjct: 396  VQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKL 443

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHS 490
                +  V+     +A G  E+P   +Y L+++Y  K P   L AD K  +   + G  +
Sbjct: 444  EFFRSRKVTKSFAHHAIG-IEVPQSCDY-LEVHYDGKKPLPNLSADKKYNSIAHIFGATT 501

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   P P  +SWC  E+T+  PK++ +       A  P
Sbjct: 502  NALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 559

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T+ ++N++T  N +   NEI   S++  ++  ID P       +P    H   + +  
Sbjct: 560  PLTLLSLNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 614

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               +P+  N E     +K  S  +    SERALL+  + +  K+D+D++V  +     L+
Sbjct: 615  VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 670

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    
Sbjct: 671  VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 715

Query: 731  SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    +
Sbjct: 716  AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 775

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK       
Sbjct: 776  RLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK------- 828

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
            K   +RS  G  D     L+  DA            + K+  AYAGGLVLEP +GLY+KY
Sbjct: 829  KPVSKRSGAGDTDAT---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEKY 875

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMV 965
            +LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SKT  G+LP  LK LV+ R+ V
Sbjct: 876  VLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKEV 935

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL
Sbjct: 936  KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREIL 994

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             +T  LVQ  +N +V+YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG+
Sbjct: 995  TNTQQLVQ-KMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDGV 1053

Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +  +LLLKKKKYAA+K+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE
Sbjct: 1054 FGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1112

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ 
Sbjct: 1113 KPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN 1172

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
            +   +     GD V Y+IC +     G++    QRA H DELK   D K  +D +YY   
Sbjct: 1173 RER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1226

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEE 1315
            QIHPVV+R+   +EGT   R+A+CLG+DP+KF    Q    E        SLL      +
Sbjct: 1227 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTL--Q 1284

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
             YR CEP    C +C          +   M+ + +P    +     +  +C K   E + 
Sbjct: 1285 LYRLCEPFRFQCVTCK---------TEQLMASAYRPGPSNSHIAVLQ--QCAKS--ECQT 1331

Query: 1376 GRISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNY 1434
              I     + NQ++     +V  +YK  ++CD   C + T + +LR      + +  P  
Sbjct: 1332 APIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFNTRTHSLR------KKSHRPLC 1385

Query: 1435 PRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
             +C +G L+R+YTE DLY QL Y   + D
Sbjct: 1386 QKCRSGSLLRQYTERDLYNQLCYLRFMFD 1414


>gi|261188006|ref|XP_002620420.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
            SLH14081]
 gi|239593431|gb|EEQ76012.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
            SLH14081]
          Length = 1458

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 431/1213 (35%), Positives = 623/1213 (51%), Gaps = 132/1213 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G+L LFGKVK   T  + S    V N+ R +Y +P  
Sbjct: 338  VEEDGSLLFFWLDYVEI-----NGSLCLFGKVKNKDTGDYVSAFAKVDNILRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+   L    V  + +  V R+
Sbjct: 393  YRVRHGHETEEEIDMED------------------VYKEVDALLSRTKVGTHKIKEVTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y LK+ Y +  P LP D+KGE F  + G +++  E F++ + + GP 
Sbjct: 435  YAFELPDVPKEGEY-LKLMYSYDKPALPIDVKGETFSRVFGINTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL     +   A    SWCK E  V  PK I V  +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKFED-ADFTAVNGASWCKLECQVSEPKLITVVPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EIV AS      A++   +  ++   P  L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEIVVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRP-SGPTYPIGFEAETRK 604

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            R           E SE+ LL++ M    K+D DVL+GH +   D ++LL+R    + P  
Sbjct: 605  RRG-----TFMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNILLNRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGR+KRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRMKRSEWPKNLSRGSSFFAE------RKLVAGRLLCDIANDMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM  I + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYISHCEADTYFIAALVLKLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+               G 
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKY---------------GG 816

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            + + + +   ED +  +    +          Y GGLV  P+KGLYDKYIL++DFNSLYP
Sbjct: 817  KQQQMSQANEEDEDGADKKKKD---------KYKGGLVFPPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+       +  VP +PS+++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRAAVVENENEEKVPKVPSNQSPGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTSKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            NN  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  NN-QLQVIYGDTDSVMINTNTDNMEDALKVGNTFKRLVNERYQLLEIDIDSVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    + V+  +
Sbjct: 1047 KKKYAAMTMTEIDGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGEDPDMVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L ++ E M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLREITEKMKEYTIPVQKYVIYTKLSKRPDEYPNKETMPPAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K +     D++YY  +QI P V RLCA
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLPPAKRSYTLQDVMKPESGLKPDVEYYLLKQIFPPVERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILS 1326
             + GT   RLA+CLGLD  K+Q   S T   D  +  +F     + D  R++    L L 
Sbjct: 1223 PLPGTDAVRLAECLGLDVKKYQINTSST--RDQQNMEIFPLESQIPDSIRFKDAARLTLR 1280

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C  C        +C S  M  +               L CP          IS   IA Q
Sbjct: 1281 CRFCHERTSFEGLCVSTEMCTAN-------------GLICPNSGCGKPFTVIS---IAAQ 1324

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C GR+  
Sbjct: 1325 LESQIRAQTSKYYEGWLVCDDSSCGNRTRQMSVYGRRCLGPRGRAE------SCLGRMGF 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRG--IEKMEISA----KIPLEKELNKIRPVVALAASTVQ 1497
            +YT+  LY QL YF  L D  +   I + E +A    KI    E N  RP        V 
Sbjct: 1379 EYTDKQLYNQLLYFARLWDVDKAKEIAEKETNAEKREKIMAMVEWN--RPRFETLKGVVD 1436

Query: 1498 RIRERCAYGWVKL 1510
               ++C   WV +
Sbjct: 1437 AYLKKCGRQWVDM 1449



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++   +  Y ++ E  IYD + E+ Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELRALRAAGKKRLTT--YEVEDEGDIYDEIDEEGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKENNQN------- 130
           DD G GY D+G+EE        S SD + L  + ++ K++R E + +KE   N       
Sbjct: 58  DDTGEGYADDGREEWNDSKQYYSDSDGDELPLRGKAAKRKREEDQQRKEKINNGISKYFN 117

Query: 131 -------VRKPNPSLTAA-AAMMGK--QRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
                    KP P  TA   A +    + + +   S  + KK+   + +    +I   L+
Sbjct: 118 TGPAAKAPSKPKPVATAEDEAFLADLLEEVDSNPVSRVLPKKAVKSETRRKVRIISPPLS 177

Query: 181 EFAPDEADRERRRRSVSSNI 200
           +    EA ++R+  ++SS +
Sbjct: 178 QNTTSEAAKDRKENNISSPL 197


>gi|322693770|gb|EFY85619.1| DNA polymerase alpha catalytic subunit, putative [Metarhizium acridum
            CQMa 102]
          Length = 1464

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 491/1562 (31%), Positives = 763/1562 (48%), Gaps = 200/1562 (12%)

Query: 29   LKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDE 88
            L+ALR+ G+++ DS  Y+++    +YD V ED Y  +V R R     F+VDD+G GY D+
Sbjct: 13   LQALRQSGKKAFDS--YSVEDAADLYDEVDEDGYKKIV-RDRLNEDDFVVDDNGEGYADD 69

Query: 89   GQEEDWS-VAGLPSSSDDESLD--GQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMM 145
            G+E DW  V    S SD + L   G+ +   Q+ +   + + + N R  +   T  A   
Sbjct: 70   GRE-DWDRVRRYDSDSDADELPVRGRPNKAAQKKKDDSQAKRDANDRNISEYFTKGA--- 125

Query: 146  GKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVS 205
            GK +  + ++ T        + +KE ++ I       A  E    RR+    S +   + 
Sbjct: 126  GKAQPKSKVSKTKDDDNFLADLIKEVDTNIPSPSPRSAKIERSGGRRKSRALSPVVEPIQ 185

Query: 206  VNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKE--LKWESDNSTELTKRDN 263
                +T+++L++    ++  NSD  + FV     D V  +++  +   + +S    K + 
Sbjct: 186  KRQKRTDTRLLSPPVANI--NSD--DGFVPDAADDGVLGTQDGPMSDPAPSSPAAKKAER 241

Query: 264  FVEVKEKVKDEVNEDVKECKK--------LNAKISTEKDPLLSA---------------- 299
              ++K + +D+ + D+ E           +N   S +   LL                  
Sbjct: 242  RAQIKPESQDDEDCDMMEVAHAGAVHSASVNIAGSRQVKKLLKQDPYPSPASSSPLKQVP 301

Query: 300  -----TAGWKEVSGGNMVLDEGKSGLNCQESEFE--VDDDGSLPFYILDAHEQLSGANMG 352
                 ++ W  ++    V++      +  + + E  ++ DGSL F+  D  E       G
Sbjct: 302  GDAVDSSSWNNLTNKLNVVNSSTETRSIGKIDHEDAIEADGSLNFFWTDYTEI-----NG 356

Query: 353  TLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
            +L LFGKV  K   ++ SC V + N+ R +Y +P           +  +D E +      
Sbjct: 357  SLCLFGKVLNKKTQSYVSCFVQIDNILRKLYFLPR---------QQRVRDGEGT------ 401

Query: 411  FRKKLQDVALGLKT---EIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYP 467
                  D  +G+     E+   +  + V+ Y +    R+YAF   ++P    Y +K+ YP
Sbjct: 402  ------DETVGMADVYEEVDEIMTKMKVNMYKIKACTRKYAFELPDVPKEAQY-MKLFYP 454

Query: 468  FKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKY 527
            +  P +     GE +  + G +++  E F++ + + GP WL I   +   A +  S CK 
Sbjct: 455  YTKPQIDV-AAGETYSHVFGANTALFEQFVLWKNIMGPCWLKIQD-ADFGAIKNASHCKL 512

Query: 528  EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
            E+  + P  +   S S ++ + PP+T+ ++ ++T FN +++  EI++ S     K  +  
Sbjct: 513  EVLAEHPNMVSPISESDNL-DAPPLTLMSVAIRTAFNAKENRQEILAISARVYDKVSLSD 571

Query: 588  PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647
               A   K P     FTV+R   G  FP+GF++    RN      +L  +  E  +L+  
Sbjct: 572  TTPAE--KLP--CRTFTVIRP-HGPSFPLGFDQLVQKRNR----GLLVLKKQEVDILSFF 622

Query: 648  MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRT 705
            + ++   D DV++GH   G D  VLL R    ++    WS++GRL+R E P    + G  
Sbjct: 623  LAQVDVADPDVILGHQFEGVDYSVLLSRLHEKKI--HQWSRLGRLRRREWPASIGKVGGN 680

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY-----SLTQLAKTQLNKD--RKEVG 758
            +F           IAGRLLCD    + D  +   Y     SLT++    L+ D  R+++ 
Sbjct: 681  VFAE------RQVIAGRLLCD---LANDAGKSAMYKCQNWSLTEMCSLYLSGDNRRRDID 731

Query: 759  PHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
                L  + +  + LM+ I + E D      L   + +LPLT+ LTN++GN W +TL G 
Sbjct: 732  NEAALNSWAKEKQGLMDYITHMEADTHFIAALALSVQLLPLTKVLTNLAGNSWARTLTGT 791

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            RA+R EY+LLH F   KYI PDK ++         R     ED N EE   E    D   
Sbjct: 792  RAERNEYILLHEFHRNKYICPDKQSF---------RGRQKREDENQEEAVGEGKKKDKYK 842

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-- 935
                             LV EP++GLYDK++L++DFNSLYPSIIQE+NICFTTV+R+   
Sbjct: 843  GG---------------LVFEPERGLYDKFVLVMDFNSLYPSIIQEFNICFTTVDRTALA 887

Query: 936  --DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTA 991
              +  VP +P+ +  G+LP L+  LV RRR VK  MK   A+  ++   DI+Q ALKLTA
Sbjct: 888  DDEDAVPEVPTDQDQGILPRLIATLVGRRRQVKALMKDKNATLEQLATWDIKQLALKLTA 947

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI 1051
            NSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++  +L+VIYGDTDS+MI++ +
Sbjct: 948  NSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESK-SLQVIYGDTDSVMINANV 1006

Query: 1052 DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D +A A  +  +  + VN +YK LEID+D +++R+LL  KKKYAA+ +  KDG   E +E
Sbjct: 1007 DSVADAFKVGNEFKKAVNDQYKLLEIDIDNVFRRILLQAKKKYAAINLIEKDGKFVEKME 1066

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KGLDM RR++  LSKE+    L +ILS    E V+  IH  L  +   MR+  + + KY
Sbjct: 1067 VKGLDMKRREYCALSKEISKHLLDEILSGDEAEVVITRIHEYLRDIAGKMRAQSIPVAKY 1126

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            +I   L K P  YP+A + P VQVALR    G +     GD V YII  + GTSS  +  
Sbjct: 1127 IIYTQLGKGPTEYPNADSMPQVQVALRDIARGKT--IRKGDVVSYIITGD-GTSSEPA-- 1181

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
              +RA  P +LK  D   + D+++Y  +QI P V RLCA+I GTS  +LA+ LGLD  ++
Sbjct: 1182 -PKRAYAPADLK-SDSTLVPDVEWYLGKQIFPPVERLCANIVGTSTSQLAEQLGLDIRRY 1239

Query: 1292 QSKPSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPSC-SSTFDCPAVCSSICMSV 1347
             S  ++  SS+       L   + DE R+  C  L L C  C +ST     V S   +S 
Sbjct: 1240 SSNQTQQNSSNDDLEIHPLESQIPDEVRFGDCARLCLRCRKCKASTRFEGLVISPDGVSA 1299

Query: 1348 SEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCD 1406
            S               + C  C      G + P + +  QV+       S YY+G ++CD
Sbjct: 1300 S--------------GVLCGGC------GAVIPTLSVIAQVEHAVRSQTSRYYEGWLVCD 1339

Query: 1407 DETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLL 1461
            D  C   T  +++        GT C   P+     C GR+  +YTE  +Y QL YF  L 
Sbjct: 1340 DSQCGNRTRQMSVY-------GTRCLG-PKGLARDCLGRMRYEYTEKAIYNQLVYFSSLW 1391

Query: 1462 DTQRGIEKMEISAKIPLEK----------ELNKIRPVVALAASTVQRIRERCAYGWVKLN 1511
            D  +   K   +    L +          E N++R         V +  ++C   WV ++
Sbjct: 1392 DVDKARSKALDTNNSTLSRQERDTILALAEHNRVR--FGTVKGVVDKYLDKCGRQWVAMD 1449

Query: 1512 DI 1513
             +
Sbjct: 1450 TL 1451


>gi|194899426|ref|XP_001979261.1| GG14396 [Drosophila erecta]
 gi|190650964|gb|EDV48219.1| GG14396 [Drosophila erecta]
          Length = 1488

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 427/1171 (36%), Positives = 626/1171 (53%), Gaps = 119/1171 (10%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVV 372
            D+ +  +   E E  +  D  L F+  +A+E      M G ++LFG+   G    S C+ 
Sbjct: 341  DDFEKSVLTTEQESTISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLR 395

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V+N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL  
Sbjct: 396  VQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKL 443

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHS 490
                +  V+     ++ G  E+P   +Y L+++Y  K P   L A+ K  +   + G  +
Sbjct: 444  EFFRSRKVTKSFAHHSIG-IEVPQTCDY-LEVHYDGKKPLPNLSANKKYNSIAHIFGATT 501

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   PAP  +SWC  E+T+  PK++ +       A  P
Sbjct: 502  NALERFLLDRKIKGPCWLQVTGFKVNPAP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 559

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T+ A+N++T  N +   NEI   S++  ++  ID P       +P    H   + +  
Sbjct: 560  PLTLLALNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 614

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               +P+  N E     +K  S  +    SERALL+  + +  K+D+D++V  +     L+
Sbjct: 615  VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 670

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    
Sbjct: 671  VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 715

Query: 731  SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    +
Sbjct: 716  AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 775

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK       
Sbjct: 776  RLMSELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK------- 828

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
            K   +RS  G  +     L+  DA            + K+  AYAGGLVLEP +GLY+KY
Sbjct: 829  KPVSKRSAAGDSEAT---LSGADATL----------QTKKKAAYAGGLVLEPMRGLYEKY 875

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKT-TGVLPELLKNLVQRRRMV 965
            +LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SKT  G+LP  LK LV+ R+ V
Sbjct: 876  VLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSKTEAGILPLQLKRLVESRKEV 935

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL
Sbjct: 936  KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREIL 994

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             ST  LVQ  LN +V+YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG+
Sbjct: 995  TSTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDIDGV 1053

Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +  +LLLKKKKYAAVK+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE
Sbjct: 1054 FGCLLLLKKKKYAAVKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1112

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ 
Sbjct: 1113 KPLEEKLDAVHAQLEKIKNQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN 1172

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
            +   +     GD V Y+IC +     G++    QRA H DELK   D K  +D +YY   
Sbjct: 1173 RER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1226

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEE 1315
            QIHPVV+R+   +EGT   R+A+CLG+DP+KF    Q    ET       SLL      +
Sbjct: 1227 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRETTEQSEGESLLKTTL--Q 1284

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTL---RCPKCPEE 1372
             YR CEP    C +C          +   M+ + +P    +     +      C   P +
Sbjct: 1285 LYRLCEPFRFQCVTCK---------TEQLMATAYRPGPSNSHIAVLQQCANSECQTAPIQ 1335

Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCP 1432
              A       + N+++     +V  +YK  ++CD   C + T + +LR+          P
Sbjct: 1336 YLAS------VRNRLQLSMRQYVQRFYKNWLVCDHPDCNFNTRTHSLRMKSHR------P 1383

Query: 1433 NYPRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
               +C +G L+R+Y+E DLY QL Y   + D
Sbjct: 1384 LCQKCRSGSLLRQYSERDLYNQLCYLRFMFD 1414


>gi|408397181|gb|EKJ76331.1| hypothetical protein FPSE_03586 [Fusarium pseudograminearum CS3096]
          Length = 1456

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 421/1220 (34%), Positives = 645/1220 (52%), Gaps = 143/1220 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            +++DGSL F+  D  E       G+L+LFGKV  K   ++ SC V V N+ R +Y +P  
Sbjct: 335  IEEDGSLNFFWTDYTEL-----NGSLFLFGKVLNKKTKSYVSCFVKVDNILRKLYFLPRE 389

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               Q  E     +  +E  +             + +  EI   +  +NV  Y +    R+
Sbjct: 390  HRMQDGE-----ETGDEVEM-------------MQVYDEIDTMMTKMNVGMYKIKACTRK 431

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y +K+ YP+  P +  +  GE +  + G+++S  E F++ + + GP 
Sbjct: 432  YAFELRDVPKEAQY-MKLLYPYSKPEIDPNRPGETYSHVFGSNTSLFEQFVLWKNIMGPC 490

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +     +  S CK E+  D P  + V S S ++ + PP+T+ +++L+T FN++
Sbjct: 491  WLKIED-ADFDKLKNASHCKLEVVADHPNMVSVLSESDNL-DAPPLTLMSVSLRTAFNEK 548

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI+S S     K  +     A   K P     FTV+R   G  FP+GF++ A  RN
Sbjct: 549  DNKQEILSISARIYEKVSLADTTPAE--KLP--CRTFTVIRP-HGQSFPLGFDQLAKKRN 603

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++  +  E  +L   + ++   D DV++GH + G D  VLL+R    ++P   W
Sbjct: 604  R----GLIVLKKQEADILAFFLAQVDVADPDVILGHQLEGVDYSVLLNRLHEKKIPG--W 657

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD-----LLREVS 739
            S++GRL+R++ P    + G  +F           ++GRL+CD    + D     +L+  S
Sbjct: 658  SRLGRLRRTQWPASIGKTGGNVFAE------RQILSGRLMCD---LANDAGKSVMLKCQS 708

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L+ D  R+E      LK + +  + L++ I + E D      L   + +L
Sbjct: 709  WSLTEMCSLYLSGDNRRREFDNEVALKTWAKEKQGLLDYITHMEADTHYIAALALGVQML 768

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK ++      ++QR+  
Sbjct: 769  PLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFYRNKYICPDKQSF-----RSRQRA-- 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                        E+A  + +T+    +       Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 822  ------------EEAQREGETAEGKKKD-----KYKGGLVFEPEKGLYDKFVLVMDFNSL 864

Query: 917  YPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-- 970
            YPSIIQE+NICFTTV+R      D  VP +P+++  G+LP L+  LV RRR VK+ MK  
Sbjct: 865  YPSIIQEFNICFTTVDRPDTKEGDDEVPEVPTNQDQGILPRLIATLVSRRRQVKSLMKDK 924

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 925  KATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTKELAE 984

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++YK LEID+D +++R+LL  
Sbjct: 985  SN-SLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYKLLEIDIDNVFRRILLQA 1043

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L++ILS    E  +  I
Sbjct: 1044 KKKYAAINLVEKDGKFIEKMEVKGLDMKRREYCALSKEISQHLLNEILSGDDTEVSIARI 1103

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H  L ++   MR   + ++KY+I   L K P+ YPD+ + P VQVALR    G +     
Sbjct: 1104 HEYLNEIAGKMREQSIPVQKYIIHTQLGKAPQDYPDSNSMPQVQVALREMAKGKT--VRK 1161

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD + Y+I  +    S SS    +RA  P +L K D   + D+++Y  +QI P V RLCA
Sbjct: 1162 GDVIAYVITGD----SNSSEPAPKRAYTPGDL-KADSSLLPDVEWYIGKQIFPPVERLCA 1216

Query: 1271 SIEGTSPERLADCLGLDP---SKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
            +I GTS  +LA+ LGLD    S FQ++ + + +      L   + DE R+  C  L L C
Sbjct: 1217 NIVGTSTSQLAEQLGLDIKRYSSFQTQQNSSSNDLEIHPLDSQIPDEVRFGDCTRLSLRC 1276

Query: 1328 PSCS--STFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
              C   STF+  A       +  E+ S+          + C  C        IS   +  
Sbjct: 1277 RKCKALSTFEGLA-------ATPERVSQ--------SGILCSPC-----GTLISTLSVVA 1316

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGR 1440
            Q++       S YY+G ++CDD  C   T  +++        G+ C   P+     C GR
Sbjct: 1317 QMEHAIRTQTSRYYEGWLICDDTQCGNRTRQMSV-------YGSRCLG-PKGLARDCLGR 1368

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS-------AKIPLEKELNKIRPVVALAA 1493
            +  +YTE  +Y QL YF  L D  +   K  I+         I    E N++R       
Sbjct: 1369 MRYEYTEKAIYTQLLYFASLWDVDKAKTKAAITEMSRPDRENILALAEHNRVR--FGNIK 1426

Query: 1494 STVQRIRERCAYGWVKLNDI 1513
              V +  ++C   WV ++ +
Sbjct: 1427 GVVDKYLDKCGRQWVAMDTL 1446



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 8/107 (7%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  LKALR  G+++ D+  Y +   + +YD V ED Y  +V R R     F+VDD+G GY
Sbjct: 7   LAELKALRASGKKAFDN--YKVADVDDLYDEVDEDGYKKVV-RERLNQDDFVVDDNGEGY 63

Query: 86  GDEGQEEDWS-VAGLPSSSDDES-LDGQ--RSIKKQRIEKRGKKENN 128
            D+G+ EDW  V    S S++E+ + G+  ++ KK R E++ K++ N
Sbjct: 64  ADDGR-EDWDRVQAYESDSEEEAGVRGRPSKAAKKSRQEEQTKRDAN 109


>gi|325183116|emb|CCA17574.1| DNA polymerase alpha catalytic subunit putative [Albugo laibachii
            Nc14]
          Length = 1561

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 417/1196 (34%), Positives = 625/1196 (52%), Gaps = 145/1196 (12%)

Query: 352  GTLYLFGKVKAGS----THHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRIS 407
            G LYL GKVK  S    T+ SCC+ V N++RC+Y +P     Q  +      +     + 
Sbjct: 379  GKLYLIGKVKVVSGSTITYQSCCITVNNLERCMYLVPKTEAVQALDPKATTMNDLTPELQ 438

Query: 408  PMAFRKKLQDVALGLKTEIANQLLNL-NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY 466
               + K  QD+   L   I N +    +  N+    V+R YAF + +IP G+N  +K+ Y
Sbjct: 439  QALWMKMHQDIHHYL---IPNCITGRKDKENFKTKLVEREYAFEREDIPRGKNKYVKVRY 495

Query: 467  PFKDPPLPADL---KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVS 523
              + P  P D+    G  F  + G  +  LE+FL+ RK+ GP W+ +    +  +  + S
Sbjct: 496  SARYPITPPDICERGGRYFSRICGASTRPLEIFLLGRKLLGPGWIEVCNVHA--SQNKES 553

Query: 524  WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKA 583
            +C+ E   D+PK I V          PP+ V +++LK V +     +EI++ S++     
Sbjct: 554  FCQLEYATDNPKGIHVLHGEDSDVP-PPLKVLSLSLKAVCHPTTHHHEIITLSMITETGV 612

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDG-----GIFPMGFNKEATDRNSKAGSN----VL 634
              +   ++        +SHFT +R +D        FP+   + A  R+ K  +      L
Sbjct: 613  NCEGASMSQRRS----ISHFTTIRPVDATTGFPDTFPLFAQQNARFRDQKTTTENRMPSL 668

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
              ES+ERA+L+  +  +   D DV+VGHN+  + L++LL R    ++   +WSK+ RL+R
Sbjct: 669  RFESNERAMLSYFLTRIQLEDPDVIVGHNLHSYTLNLLLSRIDHYKL-GGLWSKLTRLRR 727

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKD 753
              +  +  G   +       I +   GRLLCDT++ S++LL  + +YSLT LA T L K 
Sbjct: 728  GRLQPVNVGEA-WNEYRFDDISN---GRLLCDTWVSSKELLPSQNNYSLTHLATTILKKQ 783

Query: 754  RKEVGPHDVLK-MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            R ++  +++ + M  + +   +L+ +   DA   ++LM  L +LPL++QL N+ G LW +
Sbjct: 784  RFDIEMNEIPQIMCSSPQYFTKLLCHTLDDAMFILQLMHQLQILPLSKQLANLCGYLWPR 843

Query: 813  TLQG-ARAQRVEYLLLHAFRA--KKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            TL+   RA+R+E+LL H F     K+I+P+K   VK++     R + G            
Sbjct: 844  TLEANKRAERIEFLLSHEFSKSKHKFILPEK---VKQS-----RGSGG------------ 883

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                          K +   +Y GG+V  PKKGLYD +++LLDFNSLYPSII+EYNICFT
Sbjct: 884  --------------KQREKASYMGGMVFSPKKGLYDNFVVLLDFNSLYPSIIREYNICFT 929

Query: 930  TVER------------------------SPDGL-----VPHLP-SSKTTGVLPELLKNLV 959
            TV+R                        S + +     +P LP +S   GVLP ++K L+
Sbjct: 930  TVDRKLEENTTSTGKRGQKRMEGSTDVKSEENIDAEEDIPALPPASCGDGVLPGVIKRLL 989

Query: 960  QRRRMVKTWMKTASGL----KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
              R+ VK  + +AS      K Q LDI+Q+A+KLTANSMYGCLGF  SR+YAK +A LIT
Sbjct: 990  DSRKQVKQALVSASRAGQKDKAQSLDIRQKAIKLTANSMYGCLGFRYSRYYAKAIAALIT 1049

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
              GR+ L+   ++ +     +VIYGDTDSIM+ S  D +  AK I  ++  + NK ++ L
Sbjct: 1050 STGRQTLQRAKEVAELECGYDVIYGDTDSIMVDSRSDQLLDAKRIGREIQTQCNKHFELL 1109

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER-----KGLDMVRRDWSLLSKEVG 1130
            E+++D ++K +LLL KKKYAA+ V+        +I R     KGLD+VRRDW ++SK VG
Sbjct: 1110 ELEVDSIFKTILLLNKKKYAALVVKETTDTSNSIIIRYEKEVKGLDLVRRDWCVISKVVG 1169

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
            +  L QILS ++ ++VV++IH  L  V   +RS    ++++VITK+L K PE YPD   Q
Sbjct: 1170 NDILDQILSGKARDEVVDNIHMYLETVATRIRSELDPIDQFVITKSLNKQPEQYPDGAKQ 1229

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             HVQVAL LKQ G   G   G  +PY++C  Q   SG      + A HPDE+K+  GK  
Sbjct: 1230 YHVQVALALKQQGQHIG--VGSHIPYVLCKVQDPRSG------RYAYHPDEVKRAAGKLP 1281

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE--TMSSDPSSSLL 1308
            ID ++Y   QIHP V+RLC  IEGTS  +LA CLGLD SKF++  S   T   D  +  +
Sbjct: 1282 IDYEWYLESQIHPPVNRLCTHIEGTSSIQLAQCLGLDTSKFKNLSSNIGTNPEDDENDSI 1341

Query: 1309 FAV--GDEERYRGCEPLILSCPSCSSTFDCPAVC--------SSICMSVSEKPSKPETEY 1358
             +V   D+ER+  C PL L+C  C  + + P V         ++  M       +     
Sbjct: 1342 PSVLRDDQERFSHCVPLHLTCKQCHQSSNFPGVLFASGDDNGAAKTMQSGLLCPQSNCRA 1401

Query: 1359 NFWRTLRCPKCPEEVEAGRIS---PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
             FW         EE   G +      +++NQ+       V  YY+  ++C D TCK  T 
Sbjct: 1402 EFW------GYTEEGLYGNVGDDLAALLSNQLHLATRAAVRRYYEAWLVCSDVTCKTRTQ 1455

Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKME 1471
              +LR       G  C +   C   +  +YTE DLY QL YF  L D  R ++K++
Sbjct: 1456 KQSLR-----GNGNTC-SASGCQSLVHAEYTEYDLYTQLKYFSALFDPVRAMKKLQ 1505



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 12  RRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENP----IYDTVAEDEYDALVA 67
           RRS+      R  ALE L+  R+            I    P    +Y  V E+EY+ LV 
Sbjct: 4   RRSKTRTDGTRRSALEELRCARQKQSTEASDSASRIATYQPKESSVYKVVTEEEYEDLV- 62

Query: 68  RRREEARGFIVDDDG-LGYGDEGQEEDWSV--AGLPSSSDDESLDGQRSIKKQRI 119
           R+R +   F+ +DD  LGY D+G+E+ +     G PS   + S D      KQRI
Sbjct: 63  RQRRQGLPFVANDDAELGYYDDGEEQFFESDEEGNPSEQVEPSHDDS-GASKQRI 116


>gi|239615018|gb|EEQ92005.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
            ER-3]
 gi|327357152|gb|EGE86009.1| DNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1458

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 431/1213 (35%), Positives = 623/1213 (51%), Gaps = 132/1213 (10%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G+L LFGKVK   T  + S    V N+ R +Y +P  
Sbjct: 338  VEEDGSLLFFWLDYVEI-----NGSLCLFGKVKNKDTGDYVSAFAKVDNILRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+   L    V  + +  V R+
Sbjct: 393  YRVRHGHETEEEIDMED------------------VYKEVDALLSRTKVGTHKIKEVTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y LK+ Y +  P LP D+KGE F  + G +++  E F++ + + GP 
Sbjct: 435  YAFELPDVPKEGEY-LKLMYSYDKPALPIDVKGETFSRVFGINTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL     +   A    SWCK E  V  PK I V  +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKFED-ADFTAVNGASWCKLECQVSEPKLITVVPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EIV AS      A++   +  ++   P  L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEIVVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRP-SGPTYPIGFEAETRK 604

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            R           E SE+ LL++ M    K+D DVL+GH +   D ++LL+R    + P  
Sbjct: 605  RRG-----TFMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNILLNRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGR+KRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRMKRSEWPKNLSRGSSFFAE------RKLVAGRLLCDIANDMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM  I + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYISHCEADTYFIAALVLKLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+               G 
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKY---------------GG 816

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            + + + +   ED +  +    +          Y GGLV  P+KGLYDKYIL++DFNSLYP
Sbjct: 817  KQQQMSQANEEDEDGADKKKKD---------KYKGGLVFPPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+       +  VP +PS+++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRAAVVENENEEKVPKVPSNQSPGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTSKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            NN  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  NN-QLQVIYGDTDSVMINTNTDNMEDALKVGNTFKRLVNERYQLLEIDIDSVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    + V+  +
Sbjct: 1047 KKKYAAMTMTEIDGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGEDPDMVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L ++ E M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLREITEKMKEYTIPVQKYVIYTKLSKRPDEYPNKETMPPAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K +     D++YY  +QI P V RLCA
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLPPAKRSYTLQDVMKPESGLKPDVEYYLLKQIFPPVERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILS 1326
             + GT   RLA+CLGLD  K+Q   S T   D  +  +F     + D  R++    L L 
Sbjct: 1223 PLPGTDAVRLAECLGLDVKKYQINTSST--RDQQNMEIFPLESQIPDSIRFKDAVRLTLR 1280

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C  C        +C S  M  +               L CP          IS   IA Q
Sbjct: 1281 CRFCHERTSFEGLCVSTEMCTAN-------------GLICPNSGCGKPFTVIS---IAAQ 1324

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C GR+  
Sbjct: 1325 LESQIRAQTSKYYEGWLVCDDSSCGNRTRQMSVYGRRCLGPRGRAE------SCLGRMGF 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRG--IEKMEISA----KIPLEKELNKIRPVVALAASTVQ 1497
            +YT+  LY QL YF  L D  +   I + E +A    KI    E N  RP        V 
Sbjct: 1379 EYTDKQLYNQLLYFARLWDVDKAKEIAEKETNAEKREKIMAMVEWN--RPRFETLKGVVD 1436

Query: 1498 RIRERCAYGWVKL 1510
               ++C   WV +
Sbjct: 1437 AYLKKCGRQWVDM 1449



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++   +  Y ++ E  IYD + E+ Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELRALRAAGKKRLTT--YEVEDEGDIYDEIDEEGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQ-RSIKKQRIEKRGKKENNQN------- 130
           DD G GY D+G+EE        S SD + L  + ++ K++R E + +KE   N       
Sbjct: 58  DDTGEGYADDGREEWNDSKQYYSDSDGDELPLRGKAAKRKREEDQQRKEKINNGISKYFN 117

Query: 131 -------VRKPNPSLTAA-AAMMGK--QRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
                    KP P  TA   A +    + + +   S  + KK+   + +    +I   L+
Sbjct: 118 TGPAAKAPSKPKPVATAEDEAFLADLLEEVDSNPVSRVLPKKAVKSETRRKVRIISPPLS 177

Query: 181 EFAPDEADRERRRRSVSSNI 200
           +    EA ++R+  ++SS +
Sbjct: 178 QNTTSEAAKDRKENNISSPL 197


>gi|340522222|gb|EGR52455.1| polymerase [Trichoderma reesei QM6a]
          Length = 1474

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 435/1226 (35%), Positives = 636/1226 (51%), Gaps = 152/1226 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL F+  D  E       G+L LFGKV  K   ++ SC V + N+ R +Y +P  
Sbjct: 339  IEADGSLNFFWTDYTEV-----NGSLCLFGKVLNKKTQSYVSCFVKIDNILRKLYFLPRQ 393

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +  E    E D              + DV      E+   +  +NV  Y +   +R+
Sbjct: 394  QRLRDGEETGDEVD--------------MSDVY----NEVDELMTKMNVGMYKIKKCQRK 435

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   +IP   +Y +K+ YP+  P L  D KGE F  + GT+++  E F++ + + GP 
Sbjct: 436  YAFDLPDIPKEADY-MKLLYPYTKPALNMDTKGETFSHVFGTNTALFEQFVLWKNIMGPC 494

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S CK E+  + P  +   S S ++ ++PP+T+ +I L+T FN  
Sbjct: 495  WLKIQD-ADFGAIKNASHCKLEVLAEHPNMVSTISDSDNM-DMPPLTLMSIALRTAFNAA 552

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++  EI++ S     K  +     A   K P     FTV+R   G  FPMGF+  A  RN
Sbjct: 553  ENKQEIIAISARVYDKVSLSDTTPAE--KLP--CRTFTVIRP-HGQAFPMGFDTLARKRN 607

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
               G  VL  + SE  +L+  + ++   D DV++GH + G D  VLL+R    +V    W
Sbjct: 608  R--GPIVLKKQESE--VLSYFLAQVDVADPDVILGHQLEGVDYSVLLNRLLEKKV--HQW 661

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCD---------TFLCSRDLL 735
            S++GRL+R++ P    + G  +F           IAGRLLCD          F C     
Sbjct: 662  SRLGRLRRTQWPSSIGKVGGNVFAE------RQVIAGRLLCDLANDAGKSAMFKCQ---- 711

Query: 736  REVSYSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFH 792
               ++SLT++    L  D  R++V     L  + +  + LM+ + + E D      L   
Sbjct: 712  ---TWSLTEMCSLYLTGDNRRRDVDNEVALNTWAKESQGLMDYVTHMEADTHYIAALAVS 768

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+       +Q
Sbjct: 769  VQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQTF-----KGRQ 823

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            ++         EE  +E+A                     GGLV EP+KGLYDK++L++D
Sbjct: 824  KAE--------EENGDEEAGDGKKKDKY-----------KGGLVFEPEKGLYDKFVLVMD 864

Query: 913  FNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            FNSLYPSIIQE+NICFTTV+R+     +  VP +P ++  G+LP L+  LV RRR VK  
Sbjct: 865  FNSLYPSIIQEFNICFTTVDRTASADNEDAVPEVPVNQEQGILPRLIATLVSRRRQVKNL 924

Query: 969  MK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST 
Sbjct: 925  MKDKKATPEELATWDIKQLALKLTANSMYGCLGYTRSRFYARPLAILTTHKGREILRSTK 984

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL ++  +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++Y+ LEID+D +++R+
Sbjct: 985  DLAESK-SLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNVFRRI 1043

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL  KKKYAA+ +  KDG   E +E KGLDM RR++  LSKEV    L +ILS    E  
Sbjct: 1044 LLQAKKKYAAINLVEKDGKFIEKMEVKGLDMRRREYCALSKEVSKHLLDEILSGDDIEVA 1103

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V  IH  L  +   MR   + + KY I   L K P+ YP+A + P VQVALR    G + 
Sbjct: 1104 VARIHEYLRDIATKMREFSIPVAKYTIYTQLGKGPKEYPNADSMPQVQVALRDMLRGKTV 1163

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD + Y+I    GTS  SS    +RA  P +L K D     D+D+Y ++QI P V 
Sbjct: 1164 --RKGDVISYVIT---GTSK-SSEPAPKRAYSPADL-KADPSLQPDVDWYIAKQIFPPVE 1216

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEPL 1323
            RLCA+I GTS  +LA+ LGLD  ++ S  +++ SS        L   + DE R+  C+ L
Sbjct: 1217 RLCANIAGTSTSQLAEQLGLDVRRYTSTQTQSGSSSDQLEIHPLESQIPDEVRFVDCKRL 1276

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM- 1382
             L C  C ++ D   +  S        P +          + CP C        + P + 
Sbjct: 1277 KLRCRKCKASSDFEGLTGS--------PDRVTAS-----GVICPGC------SAVLPTLS 1317

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----C 1437
            +  QV+       S YY+G ++CDD  C   T  +++        GT C   P+     C
Sbjct: 1318 VVAQVEHAVRLQTSRYYEGWLVCDDPQCGNRTRQMSV-------YGTCCLG-PKGLARDC 1369

Query: 1438 NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK------MEISA----KIPLEKELNKIRP 1487
             G++  +YTE  +Y QL YF  L D  +   K       ++SA    KI    E N++R 
Sbjct: 1370 GGKMQYEYTEKAMYNQLVYFASLWDVDKAKAKAGDASNTDLSAQEREKIRALAEHNRVR- 1428

Query: 1488 VVALAASTVQRIRERCAYGWVKLNDI 1513
                  + V +  E+C   WV ++ +
Sbjct: 1429 -FTTVKTVVDKYLEKCGRQWVAMDSL 1453



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  LKALR+ G+++ +S  Y ++    +YD V E  Y  +V R R     F+VDD+
Sbjct: 6   RRAKLAELKALRQAGKKAFES--YQVEDVANLYDEVDEAGYKEIV-RDRLNQDDFVVDDN 62

Query: 82  GLGYGDEGQEEDWS-VAGLPSSSDDESLDGQ----RSIKKQRIEKRGKKENN 128
           G GY D+G+ EDW  V    S S+ + L  +    ++ KK R E++ K++ N
Sbjct: 63  GEGYADDGR-EDWDRVRPYESDSEGDELPTRGRPSKAAKKSRDEEQAKRDAN 113


>gi|307165839|gb|EFN60202.1| DNA polymerase alpha catalytic subunit [Camponotus floridanus]
          Length = 1478

 Score =  618 bits (1593), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 498/1548 (32%), Positives = 768/1548 (49%), Gaps = 212/1548 (13%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIK-LENPIYDTVAE 59
            M D QP V+GR + +  + + R  ALE+LK +R GG+R      Y I+ LEN +YD V E
Sbjct: 1    MDDSQPSVSGRVKRQRIDKTGRLSALEKLKEIRSGGKRK-----YEIEELEN-VYDEVDE 54

Query: 60   DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQR------- 112
             EY   V +R+ +   +IVDD   GY ++G+E            D+ES+   R       
Sbjct: 55   KEYSNTVLKRQRD--DWIVDDGESGYIEDGRE------IFDDDLDEESIQEARKQRHNMA 106

Query: 113  SIKKQRIEKRGKKENNQNVRKPNPSL--TAAAAMMGKQRLSAMLTSTAMFKKS------- 163
              +K+R E+ GK+ N Q++ +  PS   T    +     L  +L+  ++ KK+       
Sbjct: 107  GPRKKRKEENGKRGNIQSMIRNMPSKKNTNTTVIKDDDILGELLSEISVCKKTTNSPKPT 166

Query: 164  --KDEKVKESESVIDEVLAEFA-----PDEADRERRRRSVSSNIKSFVSVNSV-KTNSQL 215
               + K K   +V  ++   +       + +D+E   +S   N+   +  N + ++ SQ+
Sbjct: 167  QTNNNKNKFCHTVHSDITQNYQLLSTNQEISDKEVSEKSEQQNVMKPMESNDIAQSASQI 226

Query: 216  VTNSTNSV-----KENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEK 270
            + +  ++V     K+ S  +N   +I NC  +EE+  LK +  +  +LT+ +N  +   +
Sbjct: 227  IEDIDDTVIFDAPKKKS--VNKSAEINNCLKLEEN--LKLKEQDVRKLTESNNITQSASQ 282

Query: 271  V---KDEVNEDVKECKK-------------------LNAKISTEKDPLLSATAGWK---- 304
            +   +D    D  EC +                   +N  +  +K+     T  +K    
Sbjct: 283  IIEDEDTAIMDPNECIRDLSTIDFDDGSMDVDFSLPVNKNVIPQKNGTDIQTTSYKTSIK 342

Query: 305  EVSGGNMV-LDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGK--VK 361
             +  GN V L E    L   + + EV       FY LDA+E     N GT+YLFGK  V 
Sbjct: 343  SMKIGNAVDLTEIAPQLVKTKDKEEV-----FRFYYLDAYEN-PYKNPGTVYLFGKTYVS 396

Query: 362  AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG 421
                + SCCV+V  + R +Y +P        + +K  K+ E    +       ++DV   
Sbjct: 397  KHDVYCSCCVMVHCIPRRIYLLPR-------KYIKTSKNNEPQLTT-------IEDVYKE 442

Query: 422  LKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGEN 481
               E AN++    +  +     K+ Y+F +   P   +Y L+I Y  + P + AD  G  
Sbjct: 443  FD-EYANKM---RIMEFNCKETKKHYSFEKEGTPRTSDY-LEIRYNARYPAIDADYSGPA 497

Query: 482  FCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSS 541
               + GT  +ALEL L++RK+KGP WL I   S  P   R +WC   +      +I + S
Sbjct: 498  IERVFGTTVNALELLLIERKIKGPCWLDIKNIS--PTAGRFAWCSQIVVTSDMDNISLCS 555

Query: 542  SSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS 601
              K     PP+ +  +N++   N +   NE+V   V+  HK  +D      E  KP    
Sbjct: 556  QEK---SKPPMVIATLNVRMSLNAKLQ-NEVVMVVVLIHHKYNVD-----KEPPKPPYDR 606

Query: 602  HFTVVRKLDGGIFPMGFNKEATDRNSK-AGSNVLCCESSERALLNRLMIELYKLDSDVLV 660
             F  V       +P    ++  D   K A + V+ CE+    L   L   + K D D+++
Sbjct: 607  QFCFVTHPRETPWP----RQIRDAFLKIANTEVIKCETESELLEELLT-LMQKADPDLII 661

Query: 661  GHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA 720
            G++   F  DVL+ R    +V  S W+++GRLK S  P L +G+ I              
Sbjct: 662  GYD-CAFQFDVLMQRMFSLKV--SNWNRMGRLK-STTPPLLRGKIILNQA--------FV 709

Query: 721  GRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKDR---KEVGPHDVLKMFQTLESLMELI 776
            GR +CD  + +++L L+  SY L  L    L       KE+ P + L  + T + ++ LI
Sbjct: 710  GRPICDIQISAKELNLKVRSYDLQSLCSAVLKTKEHECKEITPAETLLFYNTADKILNLI 769

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
                 +A   + ++  L+++PL  Q+T+++GN+  +TL G RA+R EYLLLHAF  K YI
Sbjct: 770  HMTLKEAKFIITIVIDLNIIPLALQITSLAGNILSRTLLGGRAERNEYLLLHAFHLKDYI 829

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
             PDK       K+ K+                         + +D    ++  AY GGLV
Sbjct: 830  TPDK-------KIEKK-------------------------ARDDDGPRRKAAAYIGGLV 857

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP---SSKTTGVLPE 953
            L+PKKG YDK +LL+DFNSLYPSIIQEYN+CFTTV  +    V  L    S+   GV+P 
Sbjct: 858  LDPKKGFYDKLVLLMDFNSLYPSIIQEYNLCFTTVPGAAYADVEQLSIPESNLEAGVIPT 917

Query: 954  LLKNLVQRRRMVKTWMKTASGLKIQQLD--IQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +  LV+ R+ +K  MKT +    Q++D  I+Q ALKLTANSMYGCLG ++ RFYAK LA
Sbjct: 918  EIHKLVKSRQQIKQLMKTPNLTPEQKMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLA 977

Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
             LIT +GR+IL  T  LV+  L  EVIYGDTDS+MI++ I +     +I  K+++EVN +
Sbjct: 978  ALITTKGRQILEDTKHLVEK-LQYEVIYGDTDSLMINTNILEYDDVFSIGRKIMREVNNR 1036

Query: 1072 YKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            YK +E+D+DG+++ +LLL+KKKYAAV + +  +G    + E KGLD+VRRDW  L+ + G
Sbjct: 1037 YKKVELDIDGVFRYLLLLQKKKYAAVAMTKLPNGQMQLIQEHKGLDIVRRDWCPLACDTG 1096

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
               L  +L +++ E  +E +   L  V + +R G   L  +VITK L+K P+AYPD K  
Sbjct: 1097 KKVLDILLCDQASETRLEQVVQILQNVAKGVREGTTPLSAFVITKQLSKNPDAYPDKKQL 1156

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             HV VALRL ++G      AGDT+PY+I CE GT + ++    +RA H DE+K  + K  
Sbjct: 1157 SHVMVALRLNKAG-GRMWKAGDTLPYVI-CEDGTDASAT----ERAYHIDEVKNNE-KLK 1209

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA 1310
            +D++YY   QI PV+ R+C  IEG     LA+ LGL   +F  KP + ++ + + +L  A
Sbjct: 1210 VDVNYYLLSQIFPVILRICEPIEGIDDVFLANNLGL---QFVYKP-KILACEATLNLPLA 1265

Query: 1311 VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCP 1370
            + D +R+  C PL   C +     D   +  +I            TE++  R L    CP
Sbjct: 1266 IND-DRFNNCLPLTFKCKNERCNTDI-VITDTI------------TEFHSGRQLSLSMCP 1311

Query: 1371 EEVEAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
               +  ++ P     +I N V+      +  YY G + C++  C   T     RL  D  
Sbjct: 1312 N--QDCKLPPWKYANIIQNVVQLAMRKAIGRYYNGWLECENPLCSNRT----RRLPLDFA 1365

Query: 1427 RGTVCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS 1473
            R    P+ P C +  + R Y+  DLY QL Y+  + D  +   K  +S
Sbjct: 1366 RKF--PDCPACKDVTMSRVYSGTDLYNQLYYYHKMFDISQPAYKHLLS 1411


>gi|195344386|ref|XP_002038769.1| GM10998 [Drosophila sechellia]
 gi|194133790|gb|EDW55306.1| GM10998 [Drosophila sechellia]
          Length = 1488

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 426/1154 (36%), Positives = 623/1154 (53%), Gaps = 115/1154 (9%)

Query: 329  VDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            +  D  L F+  +A+E      M G ++LFG+   G    S C+ V+N+ R +Y +P   
Sbjct: 356  ISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLRVQNINRVLYLLPRQ- 409

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
             F  D I    K+  + +++       + D+      E+ANQL      +  V+     +
Sbjct: 410  -FLLDPI---SKEITKQKVT-------VADIYKEFDNEVANQLKLEFFRSRKVTKSFAHH 458

Query: 448  AFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            A G  E+P   +Y L+++Y  K P   L AD K  +   + G  ++ALE FL+ RK+KGP
Sbjct: 459  AIG-IEVPQSCDY-LEVHYDGKKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGP 516

Query: 506  SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
             WL ++ F   P P  +SWC  E+T+  PK++ +       A  PP+T+ A+N++T  N 
Sbjct: 517  CWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPPPLTLLALNVRTSMNP 574

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            +   NEI   S++  ++  ID P       +P    H   + +     +P+  N E    
Sbjct: 575  KTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPAVVSWPLDLNFEM--- 626

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
             +K  S  +    SERALL+  + +  K+D+D++V  +     L+V+  +    ++P   
Sbjct: 627  -AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLNVITDQIVALKIPQ-- 683

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            WS++GRL+ S+          FG      ++    GR++CD    + + +R  SY L  L
Sbjct: 684  WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRSAEECIRARSYDLQTL 730

Query: 746  AKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
             K  L     +R EV   D+L+M++  ES+ +LI     D    + LM  L+++PL  Q+
Sbjct: 731  CKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLLRLMCELNIMPLALQI 790

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK       K   +RS  G  D  
Sbjct: 791  TNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK-------KPVSKRSGAGDTDAT 843

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
               L+  DA            + K+  AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQ
Sbjct: 844  ---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQ 890

Query: 923  EYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ-- 978
            EYNICFTTV++  D   +P LP SKT  G+LP  LK LV+ R+ VK  M  A  L  +  
Sbjct: 891  EYNICFTTVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKEVKKLM-AAHDLSPELQ 949

Query: 979  -QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL +T  LVQ  LN +V
Sbjct: 950  MQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQK-LNYDV 1008

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            +YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG++  +LLLKKKKYAAV
Sbjct: 1009 VYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAV 1068

Query: 1098 KVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            K+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE+  E+ ++++H  L 
Sbjct: 1069 KLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLE 1127

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ +   +     GD V 
Sbjct: 1128 KIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMNRER-NRRYKKGDMVD 1186

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+IC +     G++    QRA H DELK   D K  +D +YY   QIHPVV+R+   +EG
Sbjct: 1187 YVICLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEG 1241

Query: 1275 TSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSC 1330
            T   R+A+CLG+DP+KF    Q    E        SLL      + YR CEP    C +C
Sbjct: 1242 TDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTL--QLYRLCEPFRFRCVTC 1299

Query: 1331 SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP-GMIANQVKR 1389
                      +   M+ + +P    +     +  +C K   E +   I     + NQ++ 
Sbjct: 1300 K---------TEQLMASAYRPGPSNSHIAVLQ--QCAKS--ECQTAPIQYLASVRNQLQL 1346

Query: 1390 QADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC-NGRLVRKYTEA 1448
                +V  +YK  ++CD   C + T + +LR      + +  P   +C +G L+R+YTE 
Sbjct: 1347 SMRQYVQRFYKNWLVCDHPDCNFNTRTHSLR------KKSHRPLCQKCRSGSLLRQYTER 1400

Query: 1449 DLYKQLTYFCHLLD 1462
            DLY QL Y   + D
Sbjct: 1401 DLYNQLCYLRFMFD 1414


>gi|310798406|gb|EFQ33299.1| DNA polymerase [Glomerella graminicola M1.001]
          Length = 1476

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 423/1220 (34%), Positives = 634/1220 (51%), Gaps = 138/1220 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL  +  D  E       G+L LFGKV  K    + SC + + N+ R ++ +P  
Sbjct: 345  VEEDGSLNMFWTDYTEV-----NGSLCLFGKVLNKKTGLYVSCFIKIDNILRKLFFLPR- 398

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               QT ++   E   EE  +             + + +E+ + +  +NV  Y +    R+
Sbjct: 399  ---QT-KVQDGEDSGEEVEL-------------MDVYSEVDSIMTKMNVGMYKIKACTRK 441

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    IP    Y LK  YP+  P +     GE F  + GT+++  E F++ + + GP 
Sbjct: 442  YAFELPGIPKEAQY-LKCLYPYTKPVIDGSTTGETFSHVFGTNTALFEQFVLWKNIMGPC 500

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I+  +   A +  S CK E+ V+ P  +   + S    + PP+T+ +I L+T FN +
Sbjct: 501  WLKITD-ADFGALKNASHCKLEVLVEHPNMVSTLNESSDNLDTPPLTLMSIALRTAFNAK 559

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI++ S     KA ++    A   K P     FT++R   G  FP+GF   A +R 
Sbjct: 560  ANKQEILAISARIYEKASLNDTTPAE--KLP--CRTFTLIRPY-GTAFPLGFETFAKERK 614

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++     E  +L   + +L  +D DV++GH + G D  VLL+R    +  +  W
Sbjct: 615  R----GLIKTFRQESEILMFFLAQLDVVDPDVILGHQLEGVDYSVLLNRLHEKK--THQW 668

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSL 742
            S++GRLKR++ P    + G  +F   A   +MS   GRLLCD         + +  S+SL
Sbjct: 669  SRLGRLKRTQWPASMNKVGGNVF---AERQVMS---GRLLCDLANDAGKSAMYKCQSWSL 722

Query: 743  TQLAKTQL--NKDRKEVGPHDVLKMF--QTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            T++    L  N  R+++     LK +  Q+ E +M  + + ETD      L   + +LPL
Sbjct: 723  TEMCSLYLPGNNRRQDIDNEAALKTWATQSKEGMMNYVTHMETDTHFITALALQVQLLPL 782

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+  + +MA++      
Sbjct: 783  TKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQTF--KGRMAQE------ 834

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            E+R+                  D  +GK+   Y GGLV EP+KGLYDK++L++DFNSLYP
Sbjct: 835  ENRD------------------DEGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYP 876

Query: 919  SIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TA 972
            SIIQEYNICFTTV+RS     + +VP +P  +  G+LP L+  LV RR+ VK  MK  +A
Sbjct: 877  SIIQEYNICFTTVDRSAMEQDEDVVPEVPKDQDQGILPRLIATLVSRRKQVKGLMKDKSA 936

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
            +  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST DL ++N
Sbjct: 937  TPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKDLAESN 996

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
              L+VIYGDTDS+MI++ +++++ A  +  +  + VN++Y+ LEID+D +++R+LL  KK
Sbjct: 997  -QLQVIYGDTDSVMINANVENVSDAFKVGQEFKKAVNERYRLLEIDIDNVFRRILLQAKK 1055

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            KYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L++ILS    E  +  IH 
Sbjct: 1056 KYAAINLVEKDGKFIEKMEVKGLDMKRREYCGLSKEISSKILNEILSGDETEKSIARIHE 1115

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L ++   MR   +  +KY+I   L K P  YP+A + P VQVALR    G       GD
Sbjct: 1116 YLREISGKMREQAIPAQKYIIFTQLGKAPTEYPNADSMPQVQVALREIAKG--KNIRRGD 1173

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             + YII  +    S SS    +RA  P ++ K D     D+++Y  +QI P V RLCA+I
Sbjct: 1174 VISYIITGD----SQSSDPAPKRAYTPQDVMKADSGLSPDVEWYLGKQIFPPVERLCANI 1229

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPSS----SLLFAVGDEERYRGCEPLILSCP 1328
             GTS  +LA+CLGLD  +++S   +      +      L   V D+ R+  C  L L C 
Sbjct: 1230 IGTSSSQLAECLGLDIRRYKSVQDQHQGGSSNDVEIHPLESQVPDDVRFAECARLSLRCR 1289

Query: 1329 SCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVK 1388
             C +        SS+   +  +P +          + C  C        IS   I  Q++
Sbjct: 1290 KCKA--------SSVFEGLVAQPDRVSAS-----GVLCGAC-----GAAISTLSIVAQLE 1331

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVR 1443
                   + YY+G ++CDD  C   T  +N+        GT C   P+     C GR+  
Sbjct: 1332 HALRTQTARYYEGWLVCDDSACGMRTRQMNV-------YGTRCLG-PKGLARDCLGRMRY 1383

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM----------EISAKIPLEKELNKIRPVVALAA 1493
            +YTE  +Y QL Y+  L D  +   K           E   KI    E N++R       
Sbjct: 1384 EYTEKAIYNQLVYYASLWDVDKAKSKASAESGSDLSPENKDKILAMAEHNRVR--FGTVK 1441

Query: 1494 STVQRIRERCAYGWVKLNDI 1513
              V +  ++C   WV ++ +
Sbjct: 1442 GVVDKYLDKCGRQWVAMDTL 1461



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 12/113 (10%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  L+ALR  G+R+     Y ++    +Y+ V E++Y  ++ R R +   F+VDD+
Sbjct: 6   RRSKLAELRALRAAGKRAN----YEVEEVEELYEEVDENQYKKII-RDRLDQDDFVVDDN 60

Query: 82  GLGYGDEGQEEDWSVAG--LPSSSDDESLDGQ----RSIKKQRIEKRGKKENN 128
           G GY D+G+EE W  A      S D+  + G+    ++ KKQR ++  K++ N
Sbjct: 61  GEGYADDGREE-WDRAPQYYSDSEDEMPMKGRGRPSKASKKQREDEDAKRDAN 112


>gi|410056286|ref|XP_003317445.2| PREDICTED: DNA polymerase alpha catalytic subunit [Pan troglodytes]
          Length = 1381

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 485/1512 (32%), Positives = 751/1512 (49%), Gaps = 236/1512 (15%)

Query: 1    MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
            + D    V+ R R        R EALERLK       ++G+   Y ++    +Y+ V E+
Sbjct: 10   LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64

Query: 61   EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            +Y  LV  R+++    IVDDDG+GY ++G+E  D  +      +D++  DG+   K +R 
Sbjct: 65   QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 122

Query: 120  EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
             K+        V KPN   +   A  GK+      T+      SKD+ + +    ++  +
Sbjct: 123  VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDDLLGDILQDLNTEV 170

Query: 180  AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
             E  P        +RS+ ++   F SV++          S  S KE          ++  
Sbjct: 171  NEITPPPVMILNIKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 229

Query: 231  NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
             + VQ+++ +  +ES  +++E    D   E+ + D    +  K  D+ +E  +E K+   
Sbjct: 230  GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDQESEPAEEVKQ--- 285

Query: 288  KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
            +  + K  +    +   +VS  + +  EG S  + QE + +          D++    FY
Sbjct: 286  EADSGKGTMSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 344

Query: 339  ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
             LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P          MK
Sbjct: 345  WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 395

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
            ++ +  +   +P++    ++DV      +IA        + Y +   K +     AE+P 
Sbjct: 396  IDLNTGKETGTPIS----MKDVYEEFDEKIA--------TKYKIMKFKSK-----AEMPQ 438

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
                            LP DLKGE F  + GT++S+LELFL+ RK+KGP WL +   S  
Sbjct: 439  ----------------LPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 480

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q VSWCK E     P  + V          PP+ V A ++KT+ N +   NEI++ +
Sbjct: 481  LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 536

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
             +  H   +D         KP   SHF VV K    IFP  F +    +N K        
Sbjct: 537  ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 586

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
             ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+ P   WSKIGRLKRS 
Sbjct: 587  AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 644

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            MPKL  GR+ FG        +   GR++CD  + +++L+R  SY L++L +  L  +R  
Sbjct: 645  MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 697

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   ++  M+     L+ L+E+   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G
Sbjct: 698  IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 757

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R++R E+LLLHAF    YIVPDK  + K                  ++L +ED   D D
Sbjct: 758  GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 801

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
            T  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R   
Sbjct: 802  T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 859

Query: 934  -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQ 984
                 + DG    +P LP  S   G+LP  ++ L          M T             
Sbjct: 860  EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLXXXXXXXXILMHT------------- 906

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
                                       E++ +   E++                YGDTDS
Sbjct: 907  --------------------------KEMVQKMNLEVI----------------YGDTDS 924

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKD 1103
            IMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   D
Sbjct: 925  IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSD 984

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I   L+++ E++ +
Sbjct: 985  GNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLN 1044

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC    
Sbjct: 1045 GSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC---- 1099

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               GS++  +QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A  
Sbjct: 1100 -QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATW 1157

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGLDP++F  +       + + +LL     + DEE+YR         P+C +        
Sbjct: 1158 LGLDPTQF--RVHHYHKDEENDALLGGPAQLTDEEKYRXXXXXXXXXPTCGT-------- 1207

Query: 1341 SSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
             +I  +V +  S  + E + +R   + C   P            ++N++      F+  Y
Sbjct: 1208 ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIKKY 1260

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
            Y G ++C++ TC+  T  L L+    +  G +CP   +    L  +Y++  LY QL ++ 
Sbjct: 1261 YDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYR 1315

Query: 1459 HLLDTQRGIEKM 1470
            ++ D +  +EK+
Sbjct: 1316 YIFDAECALEKL 1327


>gi|281203060|gb|EFA77261.1| DNA polymerase alpha catalytic subunit [Polysphondylium pallidum
            PN500]
          Length = 1518

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 411/1169 (35%), Positives = 628/1169 (53%), Gaps = 146/1169 (12%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGS----THHSCCVVVKNMQRCVYAIPNGPLFQ 390
            L FY L A E+    N G +YLFGKV++      T  SCC +++ M+R V+ +P   +  
Sbjct: 405  LQFYYLTASEE----NNGNIYLFGKVRSVENNVETFKSCCAIIEGMKRNVFLLPRDYI-- 458

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF- 449
                  L+ + E +   P    ++L      ++ ++   + +  ++ + + PV+R   F 
Sbjct: 459  ------LDDNGEPTTKEP---NEQL------IRADVTKLMNSQKITGWTLKPVERSICFD 503

Query: 450  ----GQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
                G+ + P G+  + K+ YP     L  +L G  F ++ G  SS LELFL+K+K+ GP
Sbjct: 504  YKVEGKNQ-PPGKYKLWKLCYPAAFSALKNELTGSTFQAVYGVTSSPLELFLLKKKIMGP 562

Query: 506  SWLSISKFS-SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            SWLS++ F  +    ++ SWC+ E  VDS K ++  ++S+ +   PPV V +++ K++ +
Sbjct: 563  SWLSLADFKPALSMSEKTSWCRLEGKVDSYKKVKPVAASEQMPS-PPVVVMSLSTKSLNS 621

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
                  EI+  S+V      ID    A+       + + T +R L+  + P  FN+    
Sbjct: 622  ASNP--EILMVSMVVNESISIDG---ATTGANQSRVKYHTALRHLNKEVLPHDFNQ---- 672

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              +K    V      E  LL+ +   +  +D DVL GHNI+GFDLD+LLHR +  +V   
Sbjct: 673  --NKQNLKVFV---KEHELLSHVANMIMTVDPDVLAGHNITGFDLDILLHRMKDLKVMD- 726

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLT 743
             WS IGRL+R E P+L     I  S         + GRL+CD++L C   L +E S+ L 
Sbjct: 727  -WSYIGRLRRREFPRL--SSNIGSSENQYQERQAVTGRLICDSYLLCKEFLQKEKSFKLV 783

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            ++ KTQLN D++E+    +   +Q+   L  LI+  E D  +   LMF LS LPLT+QLT
Sbjct: 784  EICKTQLNIDKEEINYLRIELYYQSSTKLNTLIDLNENDCHVIFLLMFKLSFLPLTKQLT 843

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            N++GNLW ++L G RA+R+EYLLLH F A+K+++PDK                       
Sbjct: 844  NLAGNLWNRSLAGNRAERIEYLLLHNFHAEKFVLPDK----------------------- 880

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
              + ++D +F           GK+  AY+GGLVL+PK G YD+Y++LLDFNSLYPSIIQE
Sbjct: 881  --IFSKDKDF-----------GKKKAAYSGGLVLDPKAGFYDRYVVLLDFNSLYPSIIQE 927

Query: 924  YNICFTTVERS---------PDGLVPHLP--SSKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            YN+CFTT+ER            G     P  SS + G+LP +L+ LV +RR VK  + + 
Sbjct: 928  YNVCFTTIERKLREDGNRSINGGYESAQPPASSVSRGILPTVLQRLVAKRREVKRSLASE 987

Query: 973  SGLKI-QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            S  ++ QQLDI+QQA+KL ANSMYGCLGF +SRFYA PLAEL+T++GRE L+ + ++   
Sbjct: 988  SNEELKQQLDIKQQAIKLVANSMYGCLGFKSSRFYALPLAELVTRKGRENLQKSSEIA-G 1046

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK--CLEIDLDGLYKRMLLL 1089
             +N +V+YGDTDS+MI++G+    +A+AI  ++ ++VN++Y+   +EI+LDG++KR+LLL
Sbjct: 1047 RMNYDVVYGDTDSLMINTGVSTYNEAEAIGFEIKKKVNEQYRGSVMEIELDGIFKRLLLL 1106

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS--ERSCEDVV 1147
            KKKKYAA+    K G+    I+ KG+D+VRRDW  ++KE+G+  LS I+S  +    ++ 
Sbjct: 1107 KKKKYAALIETKKAGVCSTFIQNKGIDIVRRDWCGVTKEIGNHLLSLIMSPDDNVSNNLQ 1166

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              I   +  + + MRS +V +E +VITKTL+  PE Y D  +QPHVQVAL+LK  G    
Sbjct: 1167 FEIKEYVESMAQKMRSFEVPVENFVITKTLSSAPEDYNDGDSQPHVQVALQLKAKG--EV 1224

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD +PY+I   +G         A+RARHP EL+      +ID+D+Y SQQI P + R
Sbjct: 1225 VQQGDQIPYVIV--KGEDDW-----AKRARHPKELENDAS--LIDLDWYLSQQILPPLYR 1275

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQS---KPSETMSSDPSSSLLFAVGDEERYRGCEPLI 1324
            +  S+     E+LA  LG+   K+++   K  E       + +  ++  + R+  C    
Sbjct: 1276 M-VSLLDVEEEKLATFLGMSTRKYRANKPKHQEDEEFTIDNEIYRSLDSDARFSSCTRPE 1334

Query: 1325 LSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
              C  C S      +       VS+KP            +    C  +     +SP +I 
Sbjct: 1335 FRCAFCKSLTQFKGIT-----VVSDKP--------ICLAIEGLTCSNQACKQPLSPSIIK 1381

Query: 1385 NQVKRQADGFVSMYYKGLMMCDD--ETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLV 1442
            NQ+       V  +    M C +     K    S N++ I            P CNG++ 
Sbjct: 1382 NQLSLILRANVKQHQDYAMRCTECRSVSKDYRRSDNIKCID-----------PYCNGKME 1430

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIEKME 1471
            +      + KQL YF  L   +   E+ +
Sbjct: 1431 QLVKSEQILKQLEYFQRLFSVKHIKERFD 1459



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 24/119 (20%)

Query: 13  RSRGAEASARAEALERLKALRRGGRRSGDSVGYN-------IKLENPIYDTVAEDEYDAL 65
           RS   + SA +++LE LK  + G  +  D +  +       I+ E+ + D + E      
Sbjct: 5   RSSRKKTSAVSKSLESLKRAKAGEEKRTDQISEDEEEDDQQIESEDDLQDKIEE------ 58

Query: 66  VARRREEARGFIVDDDGLGYGD----EGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           V ++R++ R F+VDDDG GYG+    E +E+D+      S  + E  + +RS+KK++ +
Sbjct: 59  VDKKRKD-RDFVVDDDGFGYGERSDAEEEEDDY------SGEEAEVANSRRSLKKKKTD 110


>gi|340719938|ref|XP_003398401.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Bombus
            terrestris]
          Length = 1462

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 424/1149 (36%), Positives = 600/1149 (52%), Gaps = 132/1149 (11%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY  DA+E       G +YLFGKV   S   + SCC+ VKN+ R +Y +P   +  +   
Sbjct: 358  FYWWDAYED-PYKQPGVVYLFGKVFVPSIKEYRSCCLTVKNIPRRIYLLPRVYVKTS--- 413

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAE 453
            +K   D E+       +++              NQ  N L +  +    V + YAF Q  
Sbjct: 414  LKGNNDEEQLNTIENVYKE-------------FNQFANKLGIKEFRSCKVSKNYAFEQEG 460

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
             PA  +Y L++ Y    PP+P+D  G +  S+ GT  ++LELFL++R +KGP WL I   
Sbjct: 461  TPAKSDY-LEVRYSANYPPVPSDYSGPSIESVFGTTVNSLELFLIERNIKGPCWLDIK-- 517

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
            S  P   + SWCK ++     ++I V S S+    +PP+ +T +N++T FN +   NEIV
Sbjct: 518  SPLPTGVQTSWCKIKVNCMKMENISVFSESQ---TLPPLVITTLNIRTSFNAKLQQNEIV 574

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
              +++  HK  ID      E  KP    HF ++       +P    ++A +  S      
Sbjct: 575  MITILMHHKYHID-----KEPPKPSFQRHFCLITHPRDTSWP----RQAREMLSNISYTT 625

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            L    +E  LL  L+  +   D D+L+G++  GF  D+L+ R    +V  S WS+ GRL+
Sbjct: 626  LMKFETETDLLEELLKIINTADPDLLIGYD-CGFQFDILVQRMITLKV--SNWSRFGRLR 682

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNK 752
            RS +P L +G+      A        AGR +CD  + +++L L+  SY L  L    L K
Sbjct: 683  RS-IPPLIRGKVNLNQAA--------AGRPICDIQISAKELNLKLRSYDLQSLCTAVLKK 733

Query: 753  DR---KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
                 KE+   +    + T   +  LI+   T+A   + ++F L+VLPL  Q+T I+GN+
Sbjct: 734  KENECKEIKSGECASFYDTPNKIDNLIKITLTEALYILSIVFELNVLPLALQITCIAGNV 793

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
              +TL   RA+R EYLLLHAF  K YI PDK    + TK  K                  
Sbjct: 794  MSRTLTAGRAERNEYLLLHAFHLKNYITPDK----RVTKKGK------------------ 831

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                      N+    K+  AY GGLVL+PKKG YDK ILL+DFNSLYPSIIQEYN+CFT
Sbjct: 832  ----------NEENASKKKAAYVGGLVLDPKKGFYDKLILLMDFNSLYPSIIQEYNLCFT 881

Query: 930  TVERSP-----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT---ASGLKIQQLD 981
            TV  +      D  +P   S+   GV+P  +  LV+ R  VK  MKT   +  LK+Q  +
Sbjct: 882  TVPGAAYAEYEDLSIPE--SNLEFGVIPTEICKLVESRGEVKKLMKTPNISPELKMQ-YN 938

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLG ++ RFYAK LA L+T +GREIL+ T  LV+  LN EVIYGD
Sbjct: 939  IRQLALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILQHTKSLVEK-LNYEVIYGD 997

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV-KVQ 1100
            TDSIMI++G+ +  +  ++  K+ QEVNK YK +E+D+DG+++ +LLL+KKKYAAV   +
Sbjct: 998  TDSIMINTGLLEYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLLLLQKKKYAAVIMTK 1057

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              +G      E KGLD+VRRDW  L+ ++G   L  +LS++SC+D +E I + L  V ++
Sbjct: 1058 LPNGQIELTQEHKGLDIVRRDWCQLACDIGRKILDHLLSDKSCDDRIEQIFSILHDVAQN 1117

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +R  QV L   +ITK L+K P  YPD K Q HVQVALRL + G      AGDT+PYIIC 
Sbjct: 1118 VRENQVPLSSLIITKQLSKNPNEYPDTK-QAHVQVALRLNKEG-GRMWKAGDTIPYIIC- 1174

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
                  G+     +RA H DE KK D    ID++YY   QI P+V R+C  IEG     L
Sbjct: 1175 ----DDGTEKSATERAYHIDEYKKSDS-LKIDVNYYLLSQIFPIVLRICEPIEGIDDVLL 1229

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPA 1338
            A CLGL+      +      +D     +  + +E+R+R C PL  +C S  C S      
Sbjct: 1230 AKCLGLENIYKSRRIIHQEHAD-----IPLLMEEDRFRYCLPLKFNCRSEKCQSEIIIKD 1284

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
            V +             E   N      C     +V+    +   I N V       V+ Y
Sbjct: 1285 VVN-------------EELGNRLSLASCSNSECKVQPWTYA-NTIQNVVTLSIRELVNEY 1330

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYF 1457
            Y G + C++  C   T  + L    D E  ++ P   +CN G L R +T+  LY QL ++
Sbjct: 1331 YNGWLECENPLCGDQTQWIPL----DFE--SLYPICRKCNDGDLHRVFTDTKLYNQLCFY 1384

Query: 1458 CHLLDTQRG 1466
             HL D  + 
Sbjct: 1385 LHLFDVNQS 1393



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 50/241 (20%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNI-KLENPIYDTVAE 59
           M D Q   +GR + +  + + R  ALE+LK L+      G    Y + +LEN +Y+ V E
Sbjct: 1   MSDTQ---SGRAKRQKFDKTGRLSALEKLKQLK------GSKHKYEVDELEN-VYEEVDE 50

Query: 60  DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            EY   V  R+ +   +I+DD   GY ++G+E            DDES+   R  K    
Sbjct: 51  KEYSKTVIERQND--DWIIDDGESGYIEDGRE------IFDDDLDDESIQEARKHK---- 98

Query: 120 EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
                      V  P  S    A   G   +  ML +  M  K K +   + ++++ +++
Sbjct: 99  -----------VAGPRKSKKDHAKKKG--NIQNMLMN--MSSKRKTDAKLDDDTILGDLM 143

Query: 180 AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNC 239
           +E   D+   + + ++VS N   F +   +         S  +V++  +LI+ + +IQ C
Sbjct: 144 SELKKDDIPTQSKPKTVSRN--KFCTTPKL---------SEKNVEKKIELISEYEKIQ-C 191

Query: 240 D 240
           D
Sbjct: 192 D 192


>gi|195396107|ref|XP_002056674.1| GJ11070 [Drosophila virilis]
 gi|194143383|gb|EDW59786.1| GJ11070 [Drosophila virilis]
          Length = 1481

 Score =  614 bits (1584), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 419/1176 (35%), Positives = 626/1176 (53%), Gaps = 108/1176 (9%)

Query: 352  GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            G ++LFG+   G    S CV V+N+ R +Y +P   L   D I K           P   
Sbjct: 370  GEVFLFGRTPDGK---SICVRVQNINRVLYLLPRQYLL--DPITK----------EPTKQ 414

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
            +    D+     T IA +L      +  VS     +A G  E+P   +Y L+++Y  K P
Sbjct: 415  KVTAADMYKEFDTHIATELKLDTFRSRKVSKSFANHAIG-IEVPQTCDY-LEVHYDGKKP 472

Query: 472  -PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEIT 530
             P   + K ++   + G  ++ALE FL++RK+KGP WL IS F+  PAP  +SWCK ++T
Sbjct: 473  APNMQNKKYDSIAHIFGASTNALERFLLERKIKGPCWLQISGFNVNPAP--LSWCKTDVT 530

Query: 531  VDSPKDIRVSSSSKHVAEVPP-VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
            V  PK++ +    +     PP +T+  +N++T  N +   NEI   S++  ++  ID P 
Sbjct: 531  VGEPKNVELVLVEQGKPAPPPALTLLTLNVRTSMNPKTLKNEICMISMLTHNRFHIDRPA 590

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
                  +P    H   + +     +P   N +     SK  S  +    SERALL+  + 
Sbjct: 591  -----PQPAFNRHMCALTRPAVSSWPFDLNLQL----SKYKSTKIYKHDSERALLSWFLA 641

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +  ++D+D++V  +     L+V+  +    ++P   WS++GRL+ S+          FG 
Sbjct: 642  QYQQIDADLIVTFDAMDCQLNVITDQIVALKIPQ--WSRMGRLRFSQ---------TFGK 690

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMF 766
                 ++    GR++CD    + + +R  SY L  L +  L     +R EV   D+L+M+
Sbjct: 691  K----LLDHFVGRMVCDVKRSAEECIRARSYDLQTLCQQVLKLQESERMEVNADDLLEMY 746

Query: 767  QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            +  E++ +LI     DA   + LM  L+++PL  Q+TNI GN   +TLQG R++R EYLL
Sbjct: 747  EKGENVTKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEYLL 806

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LHAF  K YIVPDK                    R V    + DA   + T        +
Sbjct: 807  LHAFHEKNYIVPDKLPA-----------------RRVAAGADPDATSQDTTVAAGAGAVR 849

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLP-S 944
            +  AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP S
Sbjct: 850  KKAAYAGGLVLEPIRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPHDAEQLPTLPDS 909

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
            S   G+LP  L+ LV+ RR VK  M     A+ L +Q   I+Q ALKLTANSMYGCLGF+
Sbjct: 910  SAEPGILPLQLRRLVESRREVKKLMAAPDLAAELHMQ-YHIRQMALKLTANSMYGCLGFA 968

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            +SRF+A+ LA L+T +GREIL +T  LVQ  LN +V+YGDTDS+MI++ I D  +   I 
Sbjct: 969  HSRFFAQHLAALVTHKGREILVNTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIG 1027

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRR 1120
              + Q VNK YK LE+D+DG++  +LLLKKKKYAAVK+ +   G+     E KGLD+VRR
Sbjct: 1028 HTIKQSVNKLYKQLELDIDGVFACLLLLKKKKYAAVKLSKNAKGVLLREQEHKGLDIVRR 1087

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DWS L+  VG   L ++L+++  ED +E++H  L +++E +    V L  YVITK LT+ 
Sbjct: 1088 DWSQLAVMVGKAVLDEVLADKPLEDKLEAVHAQLGRIKEQITQSAVPLPLYVITKQLTRA 1147

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
            P+ Y ++ + PHVQVALR+ +   +     GD V Y+IC +     G++    QRA H +
Sbjct: 1148 PQEYANSSSLPHVQVALRMNRER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLE 1201

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM- 1299
            EL KG     +D +YY S QIHPVV+R+   +EGT   R+A+CLG+D SK++        
Sbjct: 1202 EL-KGSESLQLDTNYYLSHQIHPVVTRMVEVLEGTDASRIAECLGMDASKYRQNAQRIQR 1260

Query: 1300 -SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
              ++ +          + YR CEP    C +C          +   M+ + +P    +  
Sbjct: 1261 ERTEEADGESLQKTTLQLYRLCEPFRFKCVACK---------TEQLMASAYRPGPNSSHV 1311

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
               +     +C        +S   I NQ++    G+V  +Y+  ++CD   C Y T S +
Sbjct: 1312 PVLQQCVNSECQTSPLQYLVS---IRNQLQLCMRGYVQRFYRNWLVCDHPDCNYNTRSYS 1368

Query: 1419 LRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
            +RL     R  +C    +CN G ++R+Y+E DLY QL Y   + D    + K ++  K  
Sbjct: 1369 VRL---EMRRPLC---LKCNSGAMLRQYSERDLYNQLCYLRFMFD----LNKQQLQQKPT 1418

Query: 1478 LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            L  EL +      L   TV++  +  +Y  + L +I
Sbjct: 1419 LTPELEQ---AYQLLHDTVEQQFQCSSYVVISLGNI 1451


>gi|407927318|gb|EKG20213.1| DNA-directed DNA polymerase family B pol2 [Macrophomina phaseolina
            MS6]
          Length = 1467

 Score =  614 bits (1584), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 432/1222 (35%), Positives = 628/1222 (51%), Gaps = 133/1222 (10%)

Query: 326  EFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAI 383
            E  +++DGSL F+ +D  E       G+L LFGK++  ST    S  V + N+ R ++ +
Sbjct: 334  EHALEEDGSLRFFWIDYTEV-----KGSLCLFGKIRDKSTGSFVSAFVKIDNILRKLFFL 388

Query: 384  PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG-LKTEIANQLLNLNVSNYIVSP 442
            P       +   K  +D EE             +V +G +  E+   +    V  + + P
Sbjct: 389  PR------EYRQKHGRDTEE-------------EVGMGDVYQEVDGLMSRFQVDMHKIKP 429

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
              R+YAF   EIP    Y LK+ YP+    LP DLKGE F  + GT++S  E F++ + +
Sbjct: 430  CTRKYAFELREIPKEAEY-LKLLYPYTKQQLPMDLKGETFSHVFGTNTSIFEQFVLWKNI 488

Query: 503  KGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
             GP WL I   ++  A    SWCK E  VD P +I     + ++ E PP+T+ +I L+T 
Sbjct: 489  MGPCWLKIDG-ANLNAVNNASWCKLECLVDKPNNITPLGETDNL-EAPPLTLMSIALRTT 546

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
            FN + +  EI+ AS        +     A   K P  L  +TV+R  +G  +P GF  +A
Sbjct: 547  FNPKDNKQEILMASASIYENVSLTDTTPAG--KLPCKL--YTVMRP-NGDSWPTGFKFDA 601

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 +     +  E +E  LL+  M  L K+D DVL+GH +   D  +LL+R +  + P
Sbjct: 602  -----EKHIGTIKMERNEHGLLSMFMSILAKMDPDVLMGHRLEDVDYGILLNRLREKKTP 656

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---- 738
               W +IGRL+R+E PK   G+   GSG+        AGRLLCD    + DL + +    
Sbjct: 657  G--WHRIGRLRRTEWPK-NLGK---GSGSFFVERQLAAGRLLCD---LANDLGKSLMTKC 707

Query: 739  -SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLS 794
             S+SL ++ +  L     R+++     LK + T  E LM  + + E D +    +   + 
Sbjct: 708  QSWSLNEMCELVLGHGNARQDIDNETALKTWATSREGLMNYVRHCEADTFFIAAIALKVQ 767

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            +LPLT+ LTN++GN WG+TL G RA+R EY+LLH F   KYI PDK  + K  K   + +
Sbjct: 768  MLPLTKVLTNLAGNSWGRTLGGTRAERNEYILLHEFHRNKYICPDK-VFGKGNKKPSEET 826

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
              G E  + ++                             LV EP+KGLYD++IL++DFN
Sbjct: 827  IEGEEGADAKKKDKYKGG----------------------LVFEPEKGLYDRFILVMDFN 864

Query: 915  SLYPSIIQEYNICFTTVERSPDGLVPHL-----PSSKTTGVLPELLKNLVQRRRMVKTWM 969
            SLYPSIIQE+NICFTTVER+              +S+  G+LP L+  LV RRR VK  M
Sbjct: 865  SLYPSIIQEFNICFTTVERAEISEEEEKVPEVPSASQDQGILPRLIATLVSRRREVKKLM 924

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K  +AS  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILR T D
Sbjct: 925  KDPSASSDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRRTKD 984

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++ + L VIYGDTDS+MI++ +D++  A  +  +  ++VN  YK LEID+D +++R+L
Sbjct: 985  LAESKM-LRVIYGDTDSVMINTNMDNLQDAFKVGNEFKRDVNDSYKLLEIDIDNVFRRLL 1043

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   DG   E +E KGLDM RR++  LSKE     L+ +LS    E VV
Sbjct: 1044 LHAKKKYAAINMVEVDGKWTEKLEVKGLDMRRREYCALSKETSSKLLNFLLSGEDPETVV 1103

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E IH  L ++   MR  +V ++KY I   L K P+ YP+  + P VQVALRL   G    
Sbjct: 1104 EKIHEYLRELAAQMRDFKVPVQKYTIFTQLGKDPKEYPNGNSMPSVQVALRLMAKG--KH 1161

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
              A D + ++I  E G   GS+   A+ A   +E+ K D     DIDYY  +QI P V R
Sbjct: 1162 VKAKDVMSFVITGESG---GSAETAAKNAYTLEEVLKPDSGLRPDIDYYLHKQILPPVER 1218

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS-SSLLFAVGDEERYRGCEPLILS 1326
            LCA I GT+  RLA+CLGLD SK++     + S D     L   + DE R++   P  L 
Sbjct: 1219 LCAPIAGTNVTRLAECLGLDTSKYRVSTLSSNSQDVEIHPLESQIPDEVRFKDSLPFTLR 1278

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            CPSC           S    +++ P     E        C +         +S   I++Q
Sbjct: 1279 CPSCKH--------QSPFRGLAKTPEMVSHEGLMCNNTSCRRA--------LSTLSISSQ 1322

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     + YY G ++CDD  C   T  +++   R +G   RG  C       GR+  
Sbjct: 1323 LEAQIRQHTARYYAGWLVCDDPACGARTRQMSVYGHRCLGPQGRGLGCA------GRMSY 1376

Query: 1444 KYTEADLYKQLTYFCHLLDT---------QRGIEK---MEISAKIPLEKELNKIRPVVAL 1491
            +  +  +Y QL Y   L D          +RG  K    E+  K+ +  E+N+ R     
Sbjct: 1377 ELGDKAMYNQLLYLQSLFDVDKAKSTITKERGSGKGVTGEVEEKVTVLAEVNRER--FET 1434

Query: 1492 AASTVQRIRERCAYGWVKLNDI 1513
                V+   +R    WV+++ +
Sbjct: 1435 WKDIVKAYLDRNGRQWVQMDSL 1456



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 23/175 (13%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
           ++RA  L  L+ALR  G+   DS  Y ++ E  +Y+ V E+ Y  +V R R +   F+VD
Sbjct: 2   ASRAARLAELRALRAAGKTRLDS--YQVEEEKQLYEEVDEEGYKKVV-RSRLDQDDFVVD 58

Query: 80  DDGLGYGDEGQEEDWSVAGLP---SSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNP 136
           D+G GY D+G+ EDW    LP   S S++E     ++ K++R E R +KE  +N    N 
Sbjct: 59  DNGEGYADDGR-EDWDTERLPRYDSESEEEQPLRGKAAKRKREEDRERKEKAKN--GINK 115

Query: 137 SLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRER 191
             +A AA                  K K  K  E E+ + ++L E   +   R R
Sbjct: 116 YFSAQAATAA--------------SKPKPMKTAEDEAFMADLLGEVDANVPSRPR 156


>gi|452989094|gb|EME88849.1| hypothetical protein MYCFIDRAFT_35428 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1475

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 426/1225 (34%), Positives = 634/1225 (51%), Gaps = 124/1225 (10%)

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAG--STHHSCCVVVKNMQRCVY 381
            +S   ++DDGSL F+  D  E       G+L LFGKVK      + SC V V N+ R +Y
Sbjct: 331  DSRDALEDDGSLRFFWTDYTEV-----NGSLCLFGKVKNRRMGGYVSCFVKVDNILRKLY 385

Query: 382  AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN-VSNYIV 440
             +P       +   K  KD  E     + F    Q+V         +QL+  N V+ + +
Sbjct: 386  FLPR------EHRQKGGKDTTEE----IDFSDVYQEV---------DQLMTRNKVAMHKI 426

Query: 441  SPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKR 500
                R+YAF    IP    Y LK+ YP+  P +  D +GE F  + GT+++  E F++ +
Sbjct: 427  KASTRKYAFELPGIPKEAEY-LKLLYPYDKPAISTDYRGETFSHVFGTNTALFEQFVLWK 485

Query: 501  KVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
             + GP WLSI   +   A    SWCK E+ V  PK I     S ++ E PP+T+ +++L+
Sbjct: 486  NIMGPCWLSIEG-ADFNAVNNASWCKLELQVSRPKGITTLGESDNL-EAPPLTMMSMSLR 543

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNK 620
            T FN +++ NEI+ AS+       +     A +   P  L  FTV+R L+   +P  F  
Sbjct: 544  TTFNAKENKNEILVASLRFYENISLTDTTPAEQL--PSRL--FTVMRPLEKD-YPQAFKA 598

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
                +  +     +  E SE+ LL+ L+  + + D D ++GH +   D  +LL R +  +
Sbjct: 599  LVEQQKHQ-----IKLERSEQGLLSMLLAIIQRHDPDAIIGHKLDDVDFGILLSRMRDRK 653

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-- 738
             P   W +IGR+KR + PK   G+   G G+        AGRLLCD    + D+ + +  
Sbjct: 654  TPG--WHRIGRMKRGDWPK-NVGK---GGGSFFAERHLAAGRLLCD---LANDMGKSIMT 704

Query: 739  ---SYSLTQLAKTQL--NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHL 793
               S+SL ++    L  N  RK++     L M  + E LM  ++  E D + +  L F  
Sbjct: 705  ACQSWSLDEMVSLYLGGNYMRKDIDNDKALSMATSKEGLMNYVKMCEIDTFYTAALAFKR 764

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G R++R EY+LLH F   KYI PDK       K A ++
Sbjct: 765  QLLPLTKVLTNLAGNSWARTLSGTRSERNEYILLHEFYRNKYICPDKVW----GKGALKK 820

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
            +     +        +                     + GGLV EP+KGLYDK+IL++DF
Sbjct: 821  TEEADAEGEEGADAKKKD------------------KFKGGLVFEPEKGLYDKFILVMDF 862

Query: 914  NSLYPSIIQEYNICFTTVERS----PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTW 968
            NSLYPS+IQEYNICFTTV+RS     D  VP +P   +  G+LP L++ LV RRR VK  
Sbjct: 863  NSLYPSLIQEYNICFTTVDRSDFAEEDDRVPEVPEDTSNKGILPRLIRTLVSRRREVKKL 922

Query: 969  MKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            MK  S  + Q    D++Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GRE+L++T 
Sbjct: 923  MKDKSATEDQLATWDVKQMALKLTANSMYGCLGYTKSRFYARPLAALTTSKGREVLQATK 982

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DL ++   L VIYGDTDS+M+++ +D+I  A  +  +  + VN++Y+ LEI++D +++R+
Sbjct: 983  DLAESAHALRVIYGDTDSVMVNTNVDNILDALKMGKEFQKSVNERYELLEIEIDHIFRRL 1042

Query: 1087 LLLKKKKYAAVK-VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            LL  KKKYAA++ V   D    E ++ KGLDM RR++  LSKE     L+ +LS    E 
Sbjct: 1043 LLHAKKKYAAIQMVDTGDNTWKEKLDVKGLDMKRREYCQLSKETSKELLNHLLSGEEPEV 1102

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            VV  IH+ L ++ E MR+ ++ + KY I   L K P+ YP+    P VQVAL+    G  
Sbjct: 1103 VVSKIHDHLRQLGEKMRNKEIPVHKYTIYTQLGKNPKDYPNGSTMPAVQVALKRMAKGKQ 1162

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                A D + ++IC   G S G     A+ A   +++   D     D+DYY  +QI P V
Sbjct: 1163 V--HAKDVMSFVIC---GDSEGKQEHAAKNAYDLEDVLAKDSGLAPDVDYYLHKQILPPV 1217

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQ----SKPSETMSSDPSSSLLFAVGDEERYRGCE 1321
             RLCA I GT+   LA+CLGLD SK++    +K SE   S+  + L   + D  RY+ CE
Sbjct: 1218 ERLCAPISGTNVTLLAECLGLDTSKYRVSGAAKSSE--QSNEITRLESQIPDHVRYKDCE 1275

Query: 1322 PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCP--KCPEEVEAGRIS 1379
            PL L C  C   F+         M+    P+  ET      TL      CP      R++
Sbjct: 1276 PLDLLCLGCKQHFEYRG------MNYEADPA--ETPITPIGTLTNDGIACPRAECKKRMA 1327

Query: 1380 PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPR 1436
               +  Q++ Q     + YY   + CD+ TC   T  +++   R +G   +G        
Sbjct: 1328 TLSLTAQLETQIRRHTARYYSAWLKCDEPTCGIRTRQISVYGHRCLG--PKGLAYG---- 1381

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVV------- 1489
            C+GR+  +Y+E  LY QL Y   + D  + +EKM     +  E EL +   V+       
Sbjct: 1382 CSGRMSFEYSEKALYNQLLYLQSIFDVDKSLEKMGAGGLVKPEYELKEKAKVLAGMNRDR 1441

Query: 1490 -ALAASTVQRIRERCAYGWVKLNDI 1513
             A+    V+   ++  +GWV ++ +
Sbjct: 1442 FAVCWDVVKAYLDKSGWGWVSMDSL 1466



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 7/111 (6%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A +RAE L +L+ALR+ G+ + D   Y ++    IY+TV ++ Y  +V R R +   F+V
Sbjct: 2   APSRAERLAQLRALRKAGKTAFDD--YEVQEAESIYETVDDEGYKKVV-RSRLDQDDFVV 58

Query: 79  DDDGLGYGDEGQEEDWSVAGLP---SSSDDESLDGQRSIKKQRIEKRGKKE 126
           DD+G GY D+G+ EDW     P   S SDD+     ++ K++R E   ++E
Sbjct: 59  DDNGEGYADDGR-EDWQDERQPMDDSESDDDLPRNSKAAKRKREEDAERQE 108


>gi|308198132|ref|XP_001386860.2| DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis,
            premeiotic DNA synthesis, recombination, and full
            sporulation [Scheffersomyces stipitis CBS 6054]
 gi|149388875|gb|EAZ62837.2| DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis,
            premeiotic DNA synthesis, recombination, and full
            sporulation [Scheffersomyces stipitis CBS 6054]
          Length = 1463

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 494/1515 (32%), Positives = 747/1515 (49%), Gaps = 190/1515 (12%)

Query: 20   SARAEALERLKALRRGGRRSGDSVG-YNIK----LENPIYDTVAEDEYDALVARRREEAR 74
            S RA   E+LK LR   R++G SV  + +     L+  IYD V E+ Y     R++    
Sbjct: 2    SLRASKREKLKQLREA-RKTGASVADFAVSEEEDLDVGIYDEVDEETYREH-KRKQLMND 59

Query: 75   GFIVDDDGLGYGDEGQEEDWSVAGLPS--SSDDESLDG-QRSIKKQRIEKRGKKENNQNV 131
             FIVDD+G GY D G +E W  +  P+  S ++E+  G +R  K QR  K  K     N 
Sbjct: 60   DFIVDDNGEGYVDNGVDE-WDDSTRPNYYSDEEEAQAGTKRKKKSQRPVKVTKVAQISNY 118

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRER 191
             KP       AA +  +++ A                      ID++L +FA     +++
Sbjct: 119  FKP----AGGAAPVQSKKVDAN---------------------IDDILDDFADSVPTKKK 153

Query: 192  RRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQN-CDVVEESKELKW 250
             +R V++  K+  S N V    +   N + SVK    + +  + +++  D  + S ++  
Sbjct: 154  AKREVTNIFKNNSSNNKVMKTKKKTFNFSTSVKSEKSVKHVSIDVEDDNDSQDFSMDMDT 213

Query: 251  ESDNSTELTK-RDNFV-EVKEKVKDEV-------NEDVKECKKLNAKISTEKDPLLSAT- 300
            E   S+ + K +D  + E KE +           NE V+E      +I   + P   A  
Sbjct: 214  EEQPSSPIKKVKDEVIAEEKENIDPSTKALNVAENESVEESDDSEDEIVVSRRPRAVAAN 273

Query: 301  ----AGWKEVSGGNM-----VLDEGKSGLNCQESEFEV------DDDGSLPFYILDAHEQ 345
                A +  V   ++           S +N  E   E       DD  S   + LD  E 
Sbjct: 274  KNNRATFSSVKAVDIPSSSPTRATSYSQINYTEKLDEALIVGSNDDKDSFKMFWLDYCEV 333

Query: 346  LSGANMGTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEES 404
             S     +L LFGK+     +    VV +  + R +Y +P           +L  D E+ 
Sbjct: 334  DS-----SLLLFGKILTREGNLVSGVVKINGLCRELYFLPRK--------FRLVDDEEDV 380

Query: 405  RISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLK 463
            +  P+         AL +  E+   LL+   +      P K +YAF  A IP    Y LK
Sbjct: 381  Q-QPVT--------ALDVNDEVTPLLLHQFGLDGLRAKPEKMKYAFELAGIPKETEY-LK 430

Query: 464  INYPFK-----DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSC 516
            I  PFK     +  +P++L+GE F  + GT++S  E F+++R + GP W+ +S   F+S 
Sbjct: 431  ILLPFKTNKNKNIVMPSELEGETFSHVFGTNASIFEAFVLQRNIMGPCWIEVSNGDFNSI 490

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
               Q  S C+ E+++DSP  I+  S +    + P +TVT+I ++TV N +Q+  E+V+ S
Sbjct: 491  ---QNTSHCQVEVSIDSPSYIKPISEA---PKAPNLTVTSIAVQTVMNPKQNKQEVVAVS 544

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
            +        D P+   E  +P  +   T+VR ++    P G  + A     K G  +  C
Sbjct: 545  LATFRDVPQDAPI--DENLQPSEM--LTIVRPVNSATVPPGLQQLA----EKQGLELRIC 596

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
              +E+ LLN L   + + D DV +GH +    LDVL+ R    ++  S +S +GR  R  
Sbjct: 597  -PNEKVLLNLLCASIKRSDPDVFIGHRLENISLDVLVQRMYDFKI--STYSALGRRNRKS 653

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT------QLAKTQL 750
             P+ R GR   G G +  I     GRLLCD       +  E+  SLT      +L +   
Sbjct: 654  FPE-RFGRNNKGFGNNLLIREIFQGRLLCD-------IANEMGQSLTSKCQSWELPEMYD 705

Query: 751  NKDRKEVGPHDV----LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
               +K+  P ++     +  +  + ++  ++   ++  ++ E+ F + +L L++QLTNI+
Sbjct: 706  VVCKKKHLPIEINYQSPQFVENADVMLMALKDNASNVQITAEIAFSIQILSLSKQLTNIA 765

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN W  TL G RA R E++LLH F+   YIVPDK     E K  K  +NH  E +   E 
Sbjct: 766  GNAWSHTLSGTRAGRNEFILLHEFKRNNYIVPDK-----EDKFHKN-ANHQQEAK--MEA 817

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
            T +DA     T+   ++K    P Y GGLV EP+KGL+  YIL++DFNSLYPSIIQE+NI
Sbjct: 818  TEDDA-----TTVTSNKK----PKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNI 868

Query: 927  CFTTVERS-------PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ 978
            CFTTV+R         D  +P LP   +  GVLP LL +LV RRR VK  +K       Q
Sbjct: 869  CFTTVDRDNFNVTHDEDRDMPSLPERDSAAGVLPRLLNSLVSRRREVKKLLKDPKNTPFQ 928

Query: 979  --QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
              Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L + ++ L 
Sbjct: 929  RAQYDIRQQALKLTANSMYGCLGYINSRFYAKPLAMLVTNKGREILMDTRQLAE-SIGLR 987

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA 1096
            V+YGDTDS+MI +G+DD  +A  I  +   +VN++Y+ LEID+D ++KR+LL  KKKYAA
Sbjct: 988  VVYGDTDSVMIDTGVDDFQEAIKIGEQFKLQVNERYRLLEIDIDNVFKRLLLHAKKKYAA 1047

Query: 1097 VK--VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            +   +  K G     +E KGLDM RR++  LSKE+  F L +ILS+   E  +  +++ L
Sbjct: 1048 MNASINSKTGEISTTLEVKGLDMRRREYCQLSKEISAFVLMKILSDLDPEKALGDVYDYL 1107

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
             ++   +++ ++A++KY I   L+K P  YP+ K+ P VQVAL+L+  G      AG  +
Sbjct: 1108 EEMSGKIKNNEIAVDKYKINTKLSKDPNNYPNGKSMPQVQVALKLRSDG--KVIKAGSVI 1165

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y+I   +     SS     RA H    KK D K   D +YY  +QI   V RL   IEG
Sbjct: 1166 TYVITAPKSDDDKSSPPERARAIHELLGKKTDLKP--DANYYLEKQIFAPVERLLERIEG 1223

Query: 1275 TSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTF 1334
                R+A CL +D  KF  +   + ++   +SL  +V D ER+R    L+L+C  C   F
Sbjct: 1224 IDMVRVAKCLDIDTKKFILRVKNSENTGEITSLEASVTDSERFRQASFLVLNC-KCGKQF 1282

Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGF 1394
                + +S   SV+            +  + C  C       +++      Q++      
Sbjct: 1283 RFGGIIASRDYSVT------------FNGVTCNSCSYNFPVLKLTA-----QLEGAIRKH 1325

Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
            +S+YY G ++CDD  C  TT  +++   R IG +           C G +  KY++  LY
Sbjct: 1326 ISVYYSGWLVCDDNACGITTRQISVYGKRCIGSSGLAH------GCKGIMRYKYSDKALY 1379

Query: 1452 KQLTYFCHLLDTQRG 1466
             QL YF  + D  + 
Sbjct: 1380 NQLLYFNAIFDVDKA 1394


>gi|350408388|ref|XP_003488387.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Bombus
            impatiens]
          Length = 1465

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 424/1149 (36%), Positives = 604/1149 (52%), Gaps = 132/1149 (11%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY  DA+E       G +YLFGKV   S   + SCC+ VKN+ R +Y +P   +  +   
Sbjct: 355  FYWWDAYED-PYKQPGVVYLFGKVFVPSIKEYRSCCLTVKNIPRRIYLLPRVYVKTS--- 410

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAE 453
              L+ + +E +++       ++DV         NQ  N L +  +    V + YAF Q  
Sbjct: 411  --LKGNDDEEQLN------TIEDVYKEF-----NQFANKLGIKEFRSCKVSKNYAFEQEG 457

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
             PA  +Y L++ Y    PP+P+D  G +  S+ GT  ++LELFL++R +KGP WL I   
Sbjct: 458  TPAKSDY-LEVRYSANYPPVPSDYSGPSIESVFGTTVNSLELFLIERNIKGPCWLDIK-- 514

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIV 573
            S  P   + SWCK ++     ++I V S S+    +PP+ +T +N++T FN +   NEIV
Sbjct: 515  SPLPTGVQTSWCKIKVNCMKMENISVFSESQ---TLPPLVITTLNIRTSFNAKLQQNEIV 571

Query: 574  SASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
              +++  HK  ID      E  KP    HF ++       +P    ++A +  S      
Sbjct: 572  MITILMHHKYHID-----KEPPKPPFQRHFCLITHPRDTSWP----RQAREVLSNISYTT 622

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            L    +E  LL  L+  +   D D+L+G++  GF  D+L+ R    +V  S WS+ GRL+
Sbjct: 623  LMKFETETDLLEELLKIINTADPDLLIGYD-CGFQFDILMQRMITLKV--SNWSRFGRLR 679

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNK 752
            RS +P L +G+      A        AGR +CD  + +++L L+  SY L  L    L K
Sbjct: 680  RS-IPPLIRGKVNLNQAA--------AGRPICDIQISAKELNLKLRSYDLQSLCTAVLKK 730

Query: 753  DR---KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
                 KE+   +    + T   +  LI+   T+A   + ++F L+VLPL  Q+T I+GN+
Sbjct: 731  KENECKEIKSGECASFYDTPNKIDNLIKITLTEALYILSIVFELNVLPLALQITCIAGNV 790

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
              +TL   RA+R EYLLLHAF  K YI PDK    + TK  K                  
Sbjct: 791  MSRTLTAGRAERNEYLLLHAFHLKNYITPDK----RVTKKGK------------------ 828

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                      N+    K+  AY GGLVL+PKKG YDK ILL+DFNSLYPSIIQEYN+CFT
Sbjct: 829  ----------NEENTSKKKAAYVGGLVLDPKKGFYDKLILLMDFNSLYPSIIQEYNLCFT 878

Query: 930  TVERSP-----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT---ASGLKIQQLD 981
            T+  +      D  +P   S+   G++P  +  LV+ R  VK  MKT   +  LK+Q  +
Sbjct: 879  TIPGAAYAEYEDLSIPE--SNLEFGIIPTEICKLVESRGEVKKLMKTPNISPELKMQ-YN 935

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLG ++ RFYAK LA L+T +GREIL+ T  LV+  LN EVIYGD
Sbjct: 936  IRQLALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILQHTKSLVEK-LNYEVIYGD 994

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV-KVQ 1100
            TDSIMI++G+ +  +  ++  K+ QEVNK YK +E+D+DG+++ +LLL+KKKYAAV   +
Sbjct: 995  TDSIMINTGLLEYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLLLLQKKKYAAVIMTK 1054

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              +G      E KGLD+VRRDW  L+ +VG   L  +LS++SC+D +E I + L  V ++
Sbjct: 1055 LPNGQIELTQEHKGLDIVRRDWCQLACDVGRKILDHLLSDKSCDDRIEQIFSILHDVAQN 1114

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +R  QV L   +ITK L+K P  YPD K Q HVQVALRL + G      AGDT+PYIIC 
Sbjct: 1115 VRENQVPLSSLIITKQLSKNPNEYPDTK-QVHVQVALRLNKEG-GRMWKAGDTIPYIIC- 1171

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
                  G+     +RA H DE KK D    ID++YY   QI P+V R+C  IEG     L
Sbjct: 1172 ----DDGTEKSATERAYHIDEYKKSDS-LKIDVNYYLLSQIFPIVLRICEPIEGIDDVLL 1226

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPA 1338
            A CLGL+      +      +D     +  + +E+R+R C PL  +C S  C S      
Sbjct: 1227 AKCLGLENIYKSRRIIHQEHAD-----IPLLMEEDRFRYCLPLKFNCRSEKCQSEIIIKD 1281

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
            V +             E   N      C     +V+    +   I N V       V+ Y
Sbjct: 1282 VVN-------------EELGNRLSLASCSNSECKVQPWTYA-NTIQNVVTLSIRELVNEY 1327

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYF 1457
            Y G + C++  C   T  + L    D E  ++ P   +CN G L R +T+  LY QL ++
Sbjct: 1328 YNGCLECENPLCGDQTQWIPL----DFE--SLYPICRKCNDGDLHRVFTDTKLYNQLCFY 1381

Query: 1458 CHLLDTQRG 1466
             HL D  + 
Sbjct: 1382 LHLFDVNQS 1390



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 16/108 (14%)

Query: 9   AGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNI-KLENPIYDTVAEDEYDALVA 67
           AGR + +  + + R  ALE+LK L+      G    Y + +LEN +Y+ V E EY   V 
Sbjct: 4   AGRAKRQKFDKTGRLSALEKLKQLK------GSKHKYEVDELEN-VYEEVDEKEYSKTVI 56

Query: 68  RRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIK 115
            R+ +   +I+DD   GY ++G+E            DDES+   R  K
Sbjct: 57  ERQND--DWIIDDGESGYIEDGRE------IFDDDLDDESIQEARKHK 96


>gi|358383606|gb|EHK21270.1| hypothetical protein TRIVIDRAFT_52153 [Trichoderma virens Gv29-8]
          Length = 1471

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 426/1227 (34%), Positives = 629/1227 (51%), Gaps = 156/1227 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL F+  D  E       G+L LFGKV  K   ++ SC V + N+ R +Y +P  
Sbjct: 338  IESDGSLNFFWTDYTEV-----NGSLCLFGKVLNKKTQSYVSCFVKIDNILRKLYFLPR- 391

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                     +  +D EE+          + DV     TE+   +  +NV  Y +   +R+
Sbjct: 392  --------QQRVRDGEET-----GDEVDMTDVY----TEVDEIMTKMNVGMYKIKKCERK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   EIP    Y +K+ YP+  P +  D KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELPEIPKEAEY-MKLLYPYTKPAINMDAKGETFSHVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S CK E+  + P  +   S S ++ ++PP+T+ +I L+T FN +
Sbjct: 494  WLKIQD-ADFGAIKNASHCKLEVLAEHPNMVSTISDSDNM-DMPPLTLMSIALRTTFNAK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS--HFTVVRKLDGGIFPMGFNKEATD 624
            ++  EI++ S      A+I   +L S+      L    FTV+R   G  FPMGF+     
Sbjct: 552  ENKQEILAIS------ARIYDKVLLSDTTPAEKLPCRTFTVIRP-HGQAFPMGFDTLVKK 604

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            R+       L  +  E  LL+  + ++   D DV++GH + G D  VLL+R    +V   
Sbjct: 605  RDRG-----LILKKQESDLLSFFLAQVDVADPDVILGHQLEGVDYSVLLNRLFEKKV--H 657

Query: 685  MWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCD---------TFLCSRD 733
             WS++GRL+R++ P    + G  +F           +AGRLLCD          F C   
Sbjct: 658  QWSRLGRLRRTQWPSSIGKTGGNVFAE------RQVMAGRLLCDLANDAGKSAMFKCQ-- 709

Query: 734  LLREVSYSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELM 790
                 ++SLT++    L  D  R++V     L  + +  + LM+ + + E D      L 
Sbjct: 710  -----TWSLTEMCSLYLTGDNRRRDVDNEVALNTWAKESQGLMDYVTHMEADTHYIAALA 764

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
              + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+    K  
Sbjct: 765  VSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQTFKGRQKAE 824

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
            ++ +     D   ++                            GLV EP+KGLYDK++L+
Sbjct: 825  EENAEEEGGDGKKKDKYKG------------------------GLVFEPEKGLYDKFVLV 860

Query: 911  LDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
            +DFNSLYPSIIQE+NICFTTV+R+     +  VP +P ++  G+LP L+  LV RRR VK
Sbjct: 861  MDFNSLYPSIIQEFNICFTTVDRTASAENEDAVPEVPVNQDQGILPRLIATLVSRRRQVK 920

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRS
Sbjct: 921  NLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTRSRFYARPLAILTTHKGREILRS 980

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T DL ++  +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++Y+ LEID+D +++
Sbjct: 981  TKDLAESK-SLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNVFR 1039

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA+ +  KDG   E +E KGLDM RR++  LSKEV    L  ILS    E
Sbjct: 1040 RILLQAKKKYAAINLIEKDGKFIEKMEVKGLDMRRREYCALSKEVSKHLLDDILSGDDIE 1099

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
              V  IH  L  +   MR   + + KY I   L K P+ YP+A + P VQVALR    G 
Sbjct: 1100 VSVARIHEYLRDIATKMRDFAIPVPKYTIYTQLGKGPKEYPNADSMPQVQVALRDLARGK 1159

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            +     GD + YI+    GTS  SS    +RA  P +L K D     D+D+Y ++QI P 
Sbjct: 1160 T--IRKGDVISYIVT---GTSQ-SSEPAPKRAYAPPDL-KADPSLQPDVDWYIAKQIFPP 1212

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLF-----AVGDEERYRG 1319
            V RLCA+I GTS  +LA+ LGLD  ++ S  ++T  S  S  L        + DE R+  
Sbjct: 1213 VERLCANIAGTSTSQLAEQLGLDVRRYTS--TQTQQSGTSDDLEIHPLESQIPDEVRFVD 1270

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
            C+ L L C  C +T     + SS        P +          + CP C      G + 
Sbjct: 1271 CKRLALRCRKCKATSAFEGLTSS--------PDRVTAS-----GVICPGC------GAVI 1311

Query: 1380 PGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-- 1436
            P + +  QV+       S YY+G ++CDD  C   T  +++          +C   P+  
Sbjct: 1312 PTLSVVAQVEHAVRLQTSRYYEGWLVCDDPQCGNRTRQMSVY--------GICCMGPKGL 1363

Query: 1437 ---CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVV---- 1489
               C G +  +YTE  +Y QL YF  L D  +   K   +      +E  KIR +V    
Sbjct: 1364 ARDCAGNMHYEYTEKAIYNQLVYFASLWDVDKAKAKALDANNDLTGQEREKIRALVEHNR 1423

Query: 1490 ---ALAASTVQRIRERCAYGWVKLNDI 1513
                   + V +  ++C   WV ++ +
Sbjct: 1424 VRFTTVKAVVDKYLDKCGRQWVAMDTL 1450



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 23/184 (12%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  LKALR+ G+++ +S  Y ++  + +YD V E  Y  +V R R     F+VDD+
Sbjct: 6   RRAKLAELKALRQAGKKAFES--YQVEDADDLYDEVDEAGYKKIV-RDRLNQDDFVVDDN 62

Query: 82  GLGYGDEGQEEDWS-VAGLPSSSDDES---LDGQ--RSIKKQRIEKRGKKENNQNVRKPN 135
           G GY D+G+ EDW  V    S S+ E+   + G+  ++ KK R E+  K++ N   R  +
Sbjct: 63  GEGYADDGR-EDWDRVRRYESDSEGENELPVRGRPSKAAKKSREEELAKRDAND--RSIS 119

Query: 136 PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRER---- 191
              T  A   GK +    +T T    K+ D+ + +    +D  +   AP  +  ER    
Sbjct: 120 EYFTKGA---GKAQPKPKVTKT----KADDDFLADLLGEVDANIPAPAPKASKVERSGGE 172

Query: 192 RRRS 195
           RRR+
Sbjct: 173 RRRA 176


>gi|157118267|ref|XP_001653143.1| DNA polymerase alpha catalytic subunit [Aedes aegypti]
 gi|108875769|gb|EAT39994.1| AAEL008247-PA [Aedes aegypti]
          Length = 1508

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 455/1297 (35%), Positives = 657/1297 (50%), Gaps = 190/1297 (14%)

Query: 270  KVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGL------NCQ 323
            +VK EV EDVK        + +EK  LLS   GW     GN+ + E +  +      +  
Sbjct: 306  QVKHEVKEDVK--------VDSEK--LLS---GW-----GNICVSELEEDMMTDMDASTS 347

Query: 324  ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST---HHSCCVVVKNMQRCV 380
            E     D D ++ F+  DA    S    G +Y+FGK+  G+      S C+ V+N+ RC+
Sbjct: 348  EGPSSADGDETVRFWFWDAWSDPS-KRQGEIYIFGKMATGNKANEFQSVCIHVQNVDRCM 406

Query: 381  YAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVA-LGLKTEIANQL-LNLNVSNY 438
            Y +                 A E   +P +     +DV+ L +  E  N +  +L V+ Y
Sbjct: 407  YML-----------------AREKEYNPSSKTTTDKDVSMLDVFNEFCNDISTSLKVTKY 449

Query: 439  IVSPVKRRYAF--GQA--EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALE 494
                V + +A+  G A  +IPA   Y L++ Y  K PP   + K      + GT+++ +E
Sbjct: 450  RTRVVTKNFAYTSGMANLQIPAQSEY-LEVRYSAKLPPPDTERKYRTISHIFGTNTNVVE 508

Query: 495  LFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
             FL++RKVKGP W+++  F    +P   S+CK E  V     I V+  +  +   PP+ +
Sbjct: 509  QFLLERKVKGPCWMTMKNFKKSNSP--ASYCKVEYEVPEINCISVAQDAATIPP-PPLVI 565

Query: 555  TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
             AIN++++ NK    NEI   SV+  H    D   L      P    HF    +  G  +
Sbjct: 566  CAINVRSILNK--STNEISMISVLV-H----DRFPLNKPPPNPPFNKHFCGAARPAGTNW 618

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            P  FN +    N+K    V  CE+ ER LLN  +      D D++V H++ GF L++L  
Sbjct: 619  PHDFNAQDPKLNTK----VTKCEN-ERTLLNWFLSLYGTFDPDLVVTHDVYGFQLELLCQ 673

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
            R    ++P   WS+I RLK  ++P            +S  +   + GR++CD    + +L
Sbjct: 674  RMMALKIPQ--WSRICRLKM-KLP------------SSKRVDDFLVGRMICDVKTSAEEL 718

Query: 735  LREVSYSLTQLAKTQL---NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            ++  SY L  L    L   + +RK+V   D+  M++    L +LI     D + +M LM 
Sbjct: 719  IKSRSYDLNTLCMEVLKIQDGERKDVLLDDIPGMYENTADLKQLIGLTMQDNFYTMRLMC 778

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L+VLPL  Q+T I+GNL  +TL G RA+R EYLLLHAF  K +IVPDK           
Sbjct: 779  ELNVLPLALQITQIAGNLMNRTLHGGRAERNEYLLLHAFTEKDFIVPDK----------A 828

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
             R+  G      E  T             + RK K   AY+GGLVL+P KG YDK+ILL+
Sbjct: 829  PRAGPGFTQDGPELAT-------------ERRKPKSKAAYSGGLVLDPIKGFYDKFILLM 875

Query: 912  DFNSLYPSIIQEYNICFTTVERSP--------DGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            DFNSLYPSIIQEYNICFTTV   P        +   P +  +   G+LP  ++ LV+ RR
Sbjct: 876  DFNSLYPSIIQEYNICFTTVLPPPPSEGGDDSEDANPVILETDEMGILPRQIRKLVESRR 935

Query: 964  MVKTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
             VK  MK ASGL+ +   Q +I+Q ALKLTANS+YGCLG++ SRFYA+ +A LITQ+GRE
Sbjct: 936  AVKQLMK-ASGLEPELKMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHMAALITQKGRE 994

Query: 1021 ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            IL +T  +V+  +N +VIYGDTDSIMI++   D  +   I   + Q VNK YKCLE+D+D
Sbjct: 995  ILMNTKSIVE-KMNYQVIYGDTDSIMINTNSIDYDEVFKIGANIKQIVNKTYKCLELDVD 1053

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            G+YK +LLLKKKKYAAV +           E KGLD+VRRDWS L+   G+F +S+ILS+
Sbjct: 1054 GIYKYLLLLKKKKYAAVSIAKVGDEIKCTQELKGLDIVRRDWSKLAVIAGNFVISEILSD 1113

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  +D +E+IH  L K+++D+ +G        ITK LT+    Y DA   PHV VA+R+ 
Sbjct: 1114 KPMDDRIENIHTKLEKLRDDLLNGVTYPSLLEITKQLTRSLNEYSDAAQLPHVTVAMRMN 1173

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI--DIDYYAS 1258
            +   +     GD V YIIC       G+S    +RA H DELK    K  +  D++YY S
Sbjct: 1174 KQR-NRNFKRGDVVGYIIC-----DDGTSAAAMKRAYHIDELKDPANKDKLKPDVEYYLS 1227

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEER-- 1316
            QQ+ PVV R+C  +EGT   RLA CLGLDP KFQ             SL  A+ D ER  
Sbjct: 1228 QQVFPVVFRICEPLEGTDACRLAMCLGLDPKKFQ-------------SLGMALKDNERNY 1274

Query: 1317 -------------YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRT 1363
                         YR C     +C  C +        + +         + ++ +   R 
Sbjct: 1275 VDGEAVQQTITQKYRHCHWFEFTCVVCKTK-------NPVASGFKPDGGRYKSVFEKCRN 1327

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
              C   P++          I NQ+     G +  +Y+  M+CD+       CS N RL  
Sbjct: 1328 ESCKVLPQQYRPA------IVNQLIAAIRGDIKRFYRRWMVCDN-----PICSQNTRLYS 1376

Query: 1424 DAERGTVCPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLE 1479
                     N P C     G LV++Y+E+DLYKQL Y+ ++ D         ++ ++ +E
Sbjct: 1377 QV----AAKNNPYCLHCQMGLLVQQYSESDLYKQLNYYSYMFDLSH--HDGRVTKQLSVE 1430

Query: 1480 KELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAIS 1516
                 +R +    ++TV+R   R  Y  +KL+D+ ++
Sbjct: 1431 -----LRNIYTALSATVERFLSRSKYANIKLSDLYLN 1462



 Score = 43.9 bits (102), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 4  EQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYD 63
          + P    R + R  +   R  ALE+L+ ++  G +      Y +     +YD V E EY 
Sbjct: 3  DSPSSEQRSKRRRIDKHGRFAALEKLRNVKAAGGKHK----YEVDEVKNVYDEVDESEYA 58

Query: 64 ALVARRREEARGFIVDDDGLGYG 86
           +V  R  E   F+ DDDG GYG
Sbjct: 59 KIVNERARE--DFVDDDDGCGYG 79


>gi|198454358|ref|XP_001359561.2| GA19530 [Drosophila pseudoobscura pseudoobscura]
 gi|198132759|gb|EAL28710.2| GA19530 [Drosophila pseudoobscura pseudoobscura]
          Length = 1474

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 488/1529 (31%), Positives = 753/1529 (49%), Gaps = 173/1529 (11%)

Query: 11   RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
            R + +  + + R  ALE+L+ L+  G ++   V  ++   + +Y+ V E EY    A+R 
Sbjct: 9    RVKRQRIDKNGRFAALEKLRQLK--GTKNKCQVEEDV---DNVYEVVDEREY----AKRA 59

Query: 71   EEARGF-IVDDDGLGYGDEGQ-----EEDWSVAG------------------LPSSSDDE 106
            +E  G   +++DG GY ++G+     E+++S  G                   P  S+ +
Sbjct: 60   QEKYGDDWIEEDGTGYAEDGRDFFEDEDEYSDEGEDKKDTKNKKKNLANNKKRPRESE-K 118

Query: 107  SLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQ------RLSAMLTSTAMF 160
             + G+ SIK        KK + +N  K +  L      M ++      +   ++    + 
Sbjct: 119  PVKGKASIKNLFSNAVPKKTDVKNSVKDDDILADILGEMKEEPGVSPKKEEKVIAPAKIV 178

Query: 161  KKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNST 220
              ++  +   ++  ++  L      E +R++   S    +   +       N ++ + + 
Sbjct: 179  LATRKSEAAAAKDYMNSFLNNIKIQEQERKKAEASSDHEMLERILKPKAAPNKKVASETP 238

Query: 221  NSV-----KENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRD---NFVEVKEKVK 272
             S      KE      N    Q     EE+ E  +  DN  + +  D   N  EV EK K
Sbjct: 239  QSSAVQVKKEPPSAKKNTTATQP----EEATEDPF-PDNDMDFSCLDDDENQFEV-EKPK 292

Query: 273  DEVNEDVKECKKLNAKISTEKDP--LLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVD 330
            + +   V + K   A  S  ++P  +    + W+ +    M  D  KS L   E E  + 
Sbjct: 293  EAIPTPV-QTKPETASSSPPEEPEDISKLLSNWESIC--QMDDDFEKSAL-AGEQETSIS 348

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
             D  L F+  +A E       G ++LFG+   G    S CV V+N+ R +Y +P   L  
Sbjct: 349  SDEQLRFWYWEAWEDPQKLP-GEVFLFGRTADGK---SVCVRVQNINRVLYLLPRQHLL- 403

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D I K           P   +  + D+     + +AN L      +  VS     +A G
Sbjct: 404  -DPITK----------EPTKQKVTVVDIYKEFDSHVANNLKLDTFRSRKVSKNFANHAIG 452

Query: 451  QAEIPAGENYVLKINYPFKDP-PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLS 509
              ++P   +Y L+++Y  K P P  A+ K ++   + G  ++ALE FL++RK+KGP WL 
Sbjct: 453  -IDVPQTCDY-LEVHYDGKKPAPNVANQKYDSIAHIFGAGTNALERFLLERKIKGPGWLQ 510

Query: 510  ISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDV 569
            IS F   PAP  +SWCK E+TV  PK++ +       A  PP+T+ A+N++T  N +   
Sbjct: 511  ISGFKVPPAP--MSWCKMEVTVSEPKNVELVQDKGKPAAPPPLTLLALNVRTSMNPKTMK 568

Query: 570  NEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
            NEI   S++  ++  ID P       +P    H   + +     +P   N E     +K 
Sbjct: 569  NEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPAVINWPFDLNLEL----AKY 619

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
             S  +    +ER+LL+  + +  ++D+D++V  +     L+V+  +    ++P   WS++
Sbjct: 620  KSTKIQKHDTERSLLSWFLAQYQQIDADLVVTFDAMDCQLNVITDQIVALKIPQ--WSRM 677

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
            GRL+ ++          FG      ++    GR++CD    + + +R  SY L  L    
Sbjct: 678  GRLRLTQS---------FGKR----LLDHFVGRMVCDVKRSAEECIRARSYDLQSLCLQV 724

Query: 750  LN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            L     +R EV   D+L+M++  E++ +LI     D    + LM  L+++PL  Q+TNI 
Sbjct: 725  LKLQESERMEVNADDLLEMYEKGENITKLISLTMQDTSYMLRLMCELNIMPLALQITNIC 784

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN   +TLQG R++R E+LLLHAF  K YIVPDK          K +   G  D      
Sbjct: 785  GNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK----------KPQRGRGAAD------ 828

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
               D  F  D +    RK     AYAGGLVLEP +GLY+K++LL+DFNSLYPSIIQEYNI
Sbjct: 829  --PDGTFGGDATALPVRKKA---AYAGGLVLEPMRGLYEKFVLLMDFNSLYPSIIQEYNI 883

Query: 927  CFTTVERSPDG-LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKIQ---QLD 981
            CFTTV++  D   +P LP +KT  G+LP  LK LV+ RR VK  M  A  L  +   Q  
Sbjct: 884  CFTTVQQPVDADELPTLPDTKTEAGILPLQLKRLVESRREVKKLM-AAPDLSPELQMQYH 942

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL +T  LVQ  LN +V+YGD
Sbjct: 943  IRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQK-LNYDVVYGD 1001

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK--RMLLLKKKKYAAVKV 1099
            TDS+MI++ I D  +   I   + Q VNK YK LE+D+DG++    +L  KK     V  
Sbjct: 1002 TDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDIDGVFSCLLLLKKKKYAAVKVSK 1061

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              K G+  E  E KGLD+VRRDWS L+  VG   L ++L+E+  E+ ++++H  L ++++
Sbjct: 1062 TSKGGLKREQ-EHKGLDIVRRDWSQLAVMVGKAVLDEVLAEKQLEEKLDAVHAQLERIKD 1120

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             +    V L  +VITK LT+ P+ Y ++ + PHVQVALR+ +   +     GD V Y+IC
Sbjct: 1121 QIAQSAVPLPLFVITKQLTRAPQEYANSGSLPHVQVALRMNRER-NRRYKKGDMVDYVIC 1179

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
             +     G++    QRA H DEL KG     +D DYY   QIHPVV+R+   +EGT   R
Sbjct: 1180 VD-----GTTNAAMQRAYHLDEL-KGSETLKLDTDYYLGHQIHPVVTRMVEVLEGTDASR 1233

Query: 1280 LADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFD 1335
            +A+CLG+DP+KF    Q    E        SLL      + YR CEP   +C +C     
Sbjct: 1234 IAECLGMDPTKFRQNAQRAQREINEQAEGESLLKTTL--QLYRLCEPFRFNCVTCK---- 1287

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
                 +   M+ + +P    +     +     +C        +S   I NQ++     +V
Sbjct: 1288 -----TEQLMASAYRPGVNHSHVPVLQQCSKAECQTAPLQYLVS---IRNQLQLAIRRYV 1339

Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
              +YK  ++CD   C Y T +  L+      R  +C  Y   +G L+R+YTE DLY QL 
Sbjct: 1340 QRFYKNWLVCDHPDCNYNTRTHTLK---KDMRRPLC--YKCKSGSLLRQYTERDLYNQLC 1394

Query: 1456 YFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            Y   L D    + K ++  K  +  EL +
Sbjct: 1395 YLRFLFD----LNKQQLQQKPTMTPELEQ 1419


>gi|429863473|gb|ELA37924.1| DNA polymerase alpha catalytic [Colletotrichum gloeosporioides Nara
            gc5]
          Length = 1471

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 438/1269 (34%), Positives = 647/1269 (50%), Gaps = 150/1269 (11%)

Query: 285  LNAKISTEKDPLLSATAGWKEVSGG-NMVLDEGKSGLNCQESEFE--VDDDGSLPFYILD 341
            LN+  +   +P++ ++A W  ++   N+V           + +++  V+ DGSL  +  D
Sbjct: 299  LNSSPAKAAEPMVDSSA-WNFITDQLNVVSSSPAEARTVGKIDYKDAVEPDGSLNLFWTD 357

Query: 342  AHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK 399
              E       G+L LFGKV  K    + SC V V N+ R +Y +P     Q  E      
Sbjct: 358  YTEV-----NGSLCLFGKVLNKKTGLYVSCFVKVDNILRKLYFLPRETRVQGSE-----D 407

Query: 400  DAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN 459
              EE  +             + + +EI   +  +NV  Y +   KR+YAF    IP    
Sbjct: 408  TGEEVGM-------------MDVYSEIDAMMTKMNVGMYKIKACKRKYAFELPGIPKEAQ 454

Query: 460  YVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAP 519
            Y LK  YP+  P +     GE F  + GT+++  E F++ + + GP WL I+  +   A 
Sbjct: 455  Y-LKCLYPYTKPVIDGSATGETFSRVFGTNTALFEQFVLWKNIMGPCWLKIND-ADFGAL 512

Query: 520  QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVC 579
            +  S CK E+ V+ P  +   S S ++ + PP+T+ A++L+T FN + +  EI++ S   
Sbjct: 513  KNASHCKLEVLVEHPNMVAPLSDSDNL-DTPPLTLMALSLRTAFNAKANKPEILAISARI 571

Query: 580  CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
              K  ++    A   K P     FT++R   G  FP+GF   A +R       +L     
Sbjct: 572  YEKLSLNDTTPAE--KLP--CRTFTLIRPY-GTSFPLGFETMAKERKR----GLLKTFRQ 622

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  +L   + +L  +D DV++GH + G D  VLL+R    +  +  WS++GRLKRS+ P 
Sbjct: 623  ESEILQFFLAQLDVVDPDVILGHQLEGVDYSVLLNRLHEKK--THQWSRLGRLKRSQWPA 680

Query: 700  L--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQL--NKD 753
               + G  +F   A   IMS   GRLLCD         + +  S+SLT++    L  N  
Sbjct: 681  SMNKVGGNVF---AERQIMS---GRLLCDLANDAGKSAMYKCQSWSLTEMCSLYLSGNNR 734

Query: 754  RKEVGPHDVLKMF--QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
            R+++     LK +  Q  + +M  I + ETD      L   + +LPLT+ LTN++GN W 
Sbjct: 735  RQDIDNEAALKGWATQNKDGMMNYITHMETDTHFITALALQVQLLPLTKVLTNLAGNSWA 794

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G RA+R EY+LLH F   KYI PDK T+         R     ED   EE   +  
Sbjct: 795  RTLTGTRAERNEYILLHEFHRNKYICPDKQTF---------RGRMAQEDNQEEEGEGKKK 845

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
            +                  Y GGLV EP+KGLYDK++L++DFNSLYPSIIQE+NICFTTV
Sbjct: 846  D-----------------KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEFNICFTTV 888

Query: 932  ERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQ 985
             RS     +  VP +P  +  G+LP L+  LV RRR VK  MK  +A+  ++   DI+Q 
Sbjct: 889  NRSAMNEDEDAVPEVPKDQDQGILPRLIATLVSRRRQVKALMKDKSATTEQLATWDIKQL 948

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++   L+VIYGDTDS+
Sbjct: 949  ALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESKA-LQVIYGDTDSV 1007

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            MI++ ++++A A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +  KDG 
Sbjct: 1008 MINANVENVADAFKVGQEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINLVEKDGK 1067

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
              E +E KGLDM RR++  LSKE+    L++ILS    E  +  IH  L ++   MR   
Sbjct: 1068 FIEKMEVKGLDMKRREYCTLSKEISSKILNEILSGDETEVSISRIHEYLREISGMMREQS 1127

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V  +KY+I   L K P  YP+A + P VQVALR    G +     GD V YII  +  +S
Sbjct: 1128 VPPQKYIIFTQLGKTPTEYPNADSMPQVQVALREIARGKTV--RRGDVVSYIITGDPQSS 1185

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
              +     +RA  P ++ K D     D+++Y  +QI P V RLCA+I GTS  +LA+CLG
Sbjct: 1186 DPA----PKRAYLPADVMKADSGLSPDVEWYMGKQIFPPVERLCANIVGTSSSQLAECLG 1241

Query: 1286 LDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            LD  +++S      SS        L   + D+ R+  C  L L C +C          SS
Sbjct: 1242 LDIRRYKSAQDGHQSSSNDMEIHPLESQIPDDVRFAECARLSLRCRTCKK--------SS 1293

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKG 1401
            +   +  +P +          + C  C   +      P M I  QV+       + YY+G
Sbjct: 1294 VFEGLLAQPDRVSAS-----GVLCDSCDATI------PMMSIVAQVEHALRTQTARYYEG 1342

Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVRKYTEADLYKQLTY 1456
             ++CDD  C   T  +N+        GT C   P+     C GR+  ++TE  +Y QL Y
Sbjct: 1343 WLVCDDTACGIRTRQMNV-------YGTRCLG-PKGLARDCLGRMRYEFTEKAIYNQLVY 1394

Query: 1457 FCHLLDTQRGIEKMEISA------------KIPLEKELNKIRPVVALAASTVQRIRERCA 1504
            F  L D    +EK++ SA            KI    E N++R         V +  ++C 
Sbjct: 1395 FASLWD----VEKIKASAESGSDLSREEKDKIFALAEHNRVR--FDTVKGVVDKYLDKCG 1448

Query: 1505 YGWVKLNDI 1513
              WV ++ +
Sbjct: 1449 RQWVAMDTL 1457



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 12/113 (10%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  L+ALR+ G++      Y ++  + +Y+ V E++Y  ++ R R +   F+VDD+
Sbjct: 6   RRSKLAELRALRQSGKKGN----YEVEDVSELYEEVDENQYKKII-RDRLDQDDFVVDDN 60

Query: 82  GLGYGDEGQEEDWSVAGLPSSSDDESLDGQ------RSIKKQRIEKRGKKENN 128
           G GY D+G+EE W  A    S  DE +  Q      +++KKQR ++  K++ N
Sbjct: 61  GEGYADDGREE-WDRAPQYYSDSDEDVTIQGRGRPSKALKKQREDEVAKRDAN 112


>gi|226289752|gb|EEH45236.1| DNA polymerase alpha catalytic subunit [Paracoccidioides brasiliensis
            Pb18]
          Length = 1459

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 429/1217 (35%), Positives = 629/1217 (51%), Gaps = 140/1217 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G L LFGKVK     ++ S  V V N+ R +Y +P  
Sbjct: 338  VEEDGSLLFFWLDYVEI-----NGNLCLFGKVKNKKSGSYVSAFVKVDNILRKLYFLPRQ 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
              ++     + E++ +            ++DV      E+A  +    V+ + +    R+
Sbjct: 393  --YRVRHGCETEEEID------------MEDVY----KEVAELMSAAKVTKHKIKESVRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   +IP    Y LK+ Y +   PLP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELPDIPKQATY-LKLMYSYDSSPLPVDVKGETFSHVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V  +S  + E P +T+ ++  +T  N +
Sbjct: 494  WLKLGN-ADFTAVNGASWCKLECQVSQPKLITVVPNSDSL-ESPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EIV AS      A++   +  ++   P  L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEIVVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRP-SGSAYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++        E SE+ LL++ M    K+D DVL+GH +   D ++LL+R    + P  
Sbjct: 602  --TRKHRGTFMLEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNILLNRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGR+KRSE PK L +G + F           +AGRLLCD    +    +++  S+S
Sbjct: 659  -WHRIGRMKRSEWPKNLSRGASFFAE------RKLVAGRLLCDIANDMGKSLMVKCQSWS 711

Query: 742  LTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM  I + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNTRRDIDNEVALKTWATSKEGLMNYISHCEADTYFIAALVLKLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+         +Q S    
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYA-----GKYQQMSQANE 826

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED                    D    K+   Y GGLV EP++GLYDKYIL++DFNSLYP
Sbjct: 827  ED-------------------EDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+       +  VP +P+ +  G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRALVAENENEEKVPEVPTEQAPGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+ LA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D+I +A  +     + VN++YK LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGDDPDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L ++ E M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRELTEKMKEFAIPVQKYVIYTKLSKGPDEYPNKETMPPAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S+ SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVISYIVT--SGDSNTSSLPPAKRSYTLQDVIKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILS 1326
             I GT   RLA+CLGLD  K+Q   S T   D  +  +F     + D  R++    L L 
Sbjct: 1223 PIPGTDAVRLAECLGLDVRKYQINISNT--RDQQNMEIFPLESQIPDSIRFKDASRLTLR 1280

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C  C        + SS  M  +               L CP          IS   I  Q
Sbjct: 1281 CRFCHERTFFEGLSSSAEMCTAN-------------GLVCPNTACGKPFNIIS---IVAQ 1324

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     + YY+G ++CDD +C   T  +++   R +G   R         C GR+  
Sbjct: 1325 LESQIRAQTAKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGRMGF 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISA----------KIPLEKELNKIRPVVALAA 1493
            +YTE  LY QL Y+  L D    ++K +++A          KI +  E N+ R       
Sbjct: 1379 EYTEKQLYNQLLYYARLWD----VDKAKVAADKEPDPEKREKIMVMVEWNRAR--FGTVK 1432

Query: 1494 STVQRIRERCAYGWVKL 1510
              V    ++C   WV +
Sbjct: 1433 GVVDAYLKKCGRQWVDM 1449



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++   +  Y I+ E  IYD V E+ Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELRALRASGKKRLTT--YEIEDEGDIYDEVDEEGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
           DD G GY D+G+EE W+     S S     DG     K +  KR ++E++Q   K N
Sbjct: 58  DDTGEGYADDGREE-WN----DSRSYYSDSDGDELPLKGKAAKRKREEDDQRKEKIN 109


>gi|225682359|gb|EEH20643.1| DNA polymerase alpha catalytic subunit A [Paracoccidioides
            brasiliensis Pb03]
          Length = 1459

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 429/1217 (35%), Positives = 624/1217 (51%), Gaps = 140/1217 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G L LFGKVK     ++ S  V V N+ R +Y +P  
Sbjct: 338  VEEDGSLLFFWLDYVEI-----NGNLCLFGKVKNKKSGSYVSAFVKVDNILRKLYFLPRQ 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+A  +    V+ + +    R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYKEVAELMSAAKVTKHKIKESVRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   +IP    Y LK+ Y +   PLP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELPDIPKQATY-LKLMYSYDSSPLPVDVKGETFSHVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V  +S  + E P +T+ ++  +T  N +
Sbjct: 494  WLKLEN-ADFTAVNGASWCKLECQVSQPKLITVVPNSDSL-ESPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EIV AS      A++   +  ++   P  L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEIVVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRP-SGSAYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++        E SE+ LL++ M    K+D DVL+GH +   D ++LL+R    + P  
Sbjct: 602  --TRKHRGTFMLEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNILLNRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGR+KRSE PK L +G + F           +AGRLLCD    +    +++  S+S
Sbjct: 659  -WHRIGRMKRSEWPKNLSRGASFFAE------RKLVAGRLLCDIANDMGKSLMVKCQSWS 711

Query: 742  LTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM  I + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNTRRDIDNEVALKTWATSKEGLMNYISHCEADTYFIAALVLKLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK          +Q S    
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKCA-----GKYQQMSQANE 826

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED                    D    K+   Y GGLV EP++GLYDKYIL++DFNSLYP
Sbjct: 827  ED-------------------EDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+       +  VP +P+ +  G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRALVAENENEEKVPEVPTEQAPGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+ LA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D+I +A  +     + VN++YK LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGDDPDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L ++ E M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRELTEKMKEFAIPVQKYVIYTKLSKGPDEYPNKETMPPAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S+ SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVISYIVT--SGDSNTSSLPPAKRSYTLQDVIKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILS 1326
             I GT   RLA+CLGLD  K+Q   S T   D  +  +F     + D  R++    L L 
Sbjct: 1223 PIPGTDAVRLAECLGLDVRKYQINISNT--RDQQNMEIFPLESQIPDSIRFKDASRLTLR 1280

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C  C        + SS  M  +               L CP          IS   I  Q
Sbjct: 1281 CRFCHERTFFEGLSSSAEMCTAN-------------GLVCPNTACGKPFNIIS---IVAQ 1324

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     + YY+G ++CDD +C   T  +++   R +G   R         C GR+  
Sbjct: 1325 LESQIRAQTAKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGRMGF 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISA----------KIPLEKELNKIRPVVALAA 1493
            +YTE  LY QL Y+  L D    ++K +++A          KI +  E N+ R       
Sbjct: 1379 EYTEKQLYNQLLYYARLWD----VDKAKVAADKEPDPEKREKIMVMVEWNRAR--FGTVK 1432

Query: 1494 STVQRIRERCAYGWVKL 1510
              V    ++C   WV +
Sbjct: 1433 GVVDAYLKKCGRQWVDM 1449



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++   +  Y I+ E  IYD V E+ Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELRALRASGKKRLTT--YEIEDEGDIYDEVDEEGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
           DD G GY D+G+EE W+ +    S      DG     K +  KR ++E++Q   K N
Sbjct: 58  DDTGEGYADDGREE-WNDSRRYYSDS----DGDELPLKGKAAKRKREEDDQRKEKIN 109


>gi|195153122|ref|XP_002017478.1| GL21505 [Drosophila persimilis]
 gi|194112535|gb|EDW34578.1| GL21505 [Drosophila persimilis]
          Length = 1474

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 423/1198 (35%), Positives = 625/1198 (52%), Gaps = 114/1198 (9%)

Query: 301  AGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV 360
            + W+ +    M  D  KS L   E E  +  D  L F+  +A E       G ++LFG+ 
Sbjct: 322  SNWESIC--QMDDDFEKSAL-AGEQETSISSDEQLRFWYWEAWEDPQKLP-GEVFLFGRT 377

Query: 361  KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVAL 420
              G    S CV V+N+ R +Y +P   L   D I K           P   +  + D+  
Sbjct: 378  ADGK---SVCVRVQNINRVLYLLPRQHLL--DPITK----------EPTKQKVTVADIYK 422

Query: 421  GLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-PLPADLKG 479
               + +AN L      +  VS     +A G  ++P   +Y L+++Y  K P P  A+ K 
Sbjct: 423  EFDSHVANNLKLDTFRSRKVSKNFANHAIG-IDVPQTCDY-LEVHYDGKKPAPNVANQKY 480

Query: 480  ENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV 539
            ++   + G  ++ALE FL++RK+KGP WL IS F   PAP  +SWCK E+TV  PK++ +
Sbjct: 481  DSIAHIFGAGTNALERFLLERKIKGPGWLQISGFKIPPAP--MSWCKMEVTVSEPKNVEL 538

Query: 540  SSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGM 599
                   A  PP+T+ A+N++T  N +   NEI   S++  ++  ID P       +P  
Sbjct: 539  VQDKGKPAAPPPLTLLALNVRTSMNPKTMKNEICMISMLTHNRFHIDRPA-----PQPAF 593

Query: 600  LSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVL 659
              H   + +     +P   N E     +K  S  +    +ER+LL+  + +  ++D+D++
Sbjct: 594  NRHMCALTRPAVINWPFDLNLEL----AKYKSTKIQKHDTERSLLSWFLAQYQQIDADLV 649

Query: 660  VGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCI 719
            V  +     L+V+  +    ++P   WS++GRL+ ++          FG      ++   
Sbjct: 650  VTFDAMDCQLNVITDQIVALKIPQ--WSRMGRLRLTQS---------FGKR----LLDHF 694

Query: 720  AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELI 776
             GR++CD    + + +R  SY L  L    L     +R EV   D+L+M++  E++ +LI
Sbjct: 695  VGRMVCDVKRSAEECIRARSYDLQSLCLQVLKLQESERMEVNADDLLEMYEKGENITKLI 754

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
                 D    + LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YI
Sbjct: 755  SLTMQDTSYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYI 814

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
            VPDK          K +   G  D         D  F  D +    RK     AYAGGLV
Sbjct: 815  VPDK----------KPQRGRGAAD--------PDGTFGGDATALPVRKKA---AYAGGLV 853

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKT-TGVLPEL 954
            LEP +GLY+K++LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP +KT  G+LP  
Sbjct: 854  LEPMRGLYEKFVLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDTKTEAGILPLQ 913

Query: 955  LKNLVQRRRMVKTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            LK LV+ RR VK  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA
Sbjct: 914  LKRLVESRREVKKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLA 972

Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
             L+T +GREIL +T  LVQ  LN +V+YGDTDS+MI++ I D  +   I   + Q VNK 
Sbjct: 973  ALVTHKGREILTNTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKL 1031

Query: 1072 YKCLEIDLDGLYK-RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            YK LE+D+DG++   +LL KKK  A    +   G+     E KGLD+VRRDWS L+  VG
Sbjct: 1032 YKQLELDIDGVFSCLLLLKKKKYAAVKVSKTAKGVLKREQEHKGLDIVRRDWSQLAVMVG 1091

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
               L ++L+E+  E+ ++++H  L ++++ +    V L  +VITK LT+ P+ Y ++ + 
Sbjct: 1092 KAVLDEVLAEKQLEEKLDAVHAQLERIKDQIAQSAVPLPLFVITKQLTRAPQEYANSGSL 1151

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            PHVQVALR+ +   +     GD V Y+IC +     G++    QRA H DEL KG     
Sbjct: 1152 PHVQVALRMNRER-NRRYKKGDMVDYVICVD-----GTTNAAMQRAYHLDEL-KGSETLK 1204

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSS 1306
            +D DYY   QIHPVV+R+   +EGT   R+A+CLG+DP+KF    Q    E        S
Sbjct: 1205 LDTDYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRAQREINEQAEGES 1264

Query: 1307 LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
            LL      + YR CEP   +C +C          +   M+ + +P    +     +    
Sbjct: 1265 LLKTTL--QLYRLCEPFRFNCVTCK---------TEQLMASAYRPGVNHSHVPVLQQCSK 1313

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
             +C        +S   I NQ++     +V  +YK  ++CD   C Y T +  L+      
Sbjct: 1314 AECQTAPLQYLVS---IRNQLQLAIRRYVQRFYKNWLVCDHPDCNYNTRTHTLK---KDM 1367

Query: 1427 RGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            R  +C  Y   +G L+R+YTE DLY QL Y   L D    + K ++  K  +  EL +
Sbjct: 1368 RRPLC--YKCKSGSLLRQYTERDLYNQLCYLRFLFD----LNKQQLQQKPTMTPELEQ 1419


>gi|400595091|gb|EJP62901.1| DNA polymerase [Beauveria bassiana ARSEF 2860]
          Length = 1462

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 424/1219 (34%), Positives = 633/1219 (51%), Gaps = 140/1219 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL F+  D  E       G+L LFGKV  K    + SC V V N+ R +Y +P  
Sbjct: 337  IEADGSLSFFWTDYTEI-----HGSLCLFGKVLNKKNQEYVSCFVKVDNILRKLYFLPRE 391

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                        +D EE+  S      ++ DV      E+ + +  +NV  Y +    R+
Sbjct: 392  HRL---------RDGEETDES-----VEMMDVY----NEVDDLMTKMNVGMYKIKACTRK 433

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y +K+ YP+    + + + GE F  + G++++  E F++ + V GP 
Sbjct: 434  YAFELPGVPKEAQY-MKLLYPYTKQQIDSSIIGETFSHVFGSNTALFEQFVLWKNVMGPC 492

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S CK E+  + P  + V+S S ++ + PP+T+ ++ L+T FN +
Sbjct: 493  WLKIED-ADFGAIKNASHCKLEVLAEHPNMLSVASESDNL-DAPPLTMMSVALRTAFNAK 550

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++  EI++ S     K  +     A   K P     FTV+R   G  FP+GF + A  RN
Sbjct: 551  ENKQEILAISARIYEKVLLSNTTPAE--KLP--CRTFTVIRP-HGQNFPLGFEQLARTRN 605

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++  +  E  +L+  + +L   D DV++GH + G D  VLL+R Q  +  +  W
Sbjct: 606  R----GLIVMKKQESDILSFFLAQLDVADPDVILGHQLEGVDYSVLLNRLQEKK--THQW 659

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSL 742
            S++GRL+R++ P+   + G  +F           IAGRLLCD         + +  ++SL
Sbjct: 660  SRLGRLRRTQWPQALGKLGGNVFAE------RQIIAGRLLCDLANEAGKSAMYKCQTWSL 713

Query: 743  TQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            T++    L+ D  R+E+     L  + +  + LM+ I + E D      L   + +LPLT
Sbjct: 714  TEMCSLYLSGDNHRREIDNESALNSWAKEKQGLMDYITHMEADTHYIAALAISVQMLPLT 773

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            + LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +    K +++       
Sbjct: 774  KVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQIFRGRQKASEE------- 826

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                    NED          +  +GK+   + GGLV EP+KGLYDK++L++DFNSLYPS
Sbjct: 827  --------NED----------EAGQGKKKDKFKGGLVFEPEKGLYDKFVLVMDFNSLYPS 868

Query: 920  IIQEYNICFTTVERS----PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TAS 973
            IIQE+NICFTTV+R+     D  VP +P  +  G+LP+L+  LV RRR VK+ MK   A+
Sbjct: 869  IIQEFNICFTTVDRTILSEDDDAVPEVPKDQDQGILPKLISTLVGRRRQVKSLMKDKNAT 928

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++  
Sbjct: 929  AEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTKELAESR- 987

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            +L+VIYGDTDS+MI++ +D +A A  +     + VN++Y+ LEID+D +++R+LL  KKK
Sbjct: 988  SLQVIYGDTDSVMINANVDSVADAFKVGNDFKRAVNEQYRLLEIDIDNVFRRILLQAKKK 1047

Query: 1094 YAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNS 1153
            YAA+ +  KDG   E +E KGLDM RR++  LSKE+    L +ILS    E+ V  IH  
Sbjct: 1048 YAAINLVEKDGKFIEKMEVKGLDMRRREYCALSKEISKRLLDEILSGAETEEAVSRIHEY 1107

Query: 1154 LMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDT 1213
            L      MR   + + KY+I   L K P  YP+A + P VQVALR    G +     GD 
Sbjct: 1108 LRDTAAKMREQTIPVAKYIIFTQLGKGPAEYPNADSMPQVQVALRDLARGKTV--RKGDV 1165

Query: 1214 VPYIICCEQGTSSG-SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            V YII     T  G SS   A+RA  P +LK  D   + D+++Y  +QI P V RLCA+I
Sbjct: 1166 VSYII-----TGDGKSSEPPAKRAHAPGDLKT-DPSLVPDVEWYLGKQIFPPVERLCANI 1219

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPS 1329
             GTS  +LA+ LGLD  ++ S  ++  S+        L   + DE R+  C  L L C  
Sbjct: 1220 VGTSTSQLAEQLGLDVRRYNSLQTQQNSASDDLEIHPLESQIPDEVRFADCTRLALRCRK 1279

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVK 1388
            C S+     + S+        P +          + C  C        I P + I  QV+
Sbjct: 1280 CKSSTPFEGLASA--------PDRVSAS-----GIVCGAC------NAIIPNISIVAQVE 1320

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVR 1443
                   + YY+G ++CDD  C   T  +++        GT C   P+     C GR+  
Sbjct: 1321 HAIRVQSTRYYEGWLVCDDSQCGNRTRQMSV-------YGTRCLG-PKGLARDCLGRMRY 1372

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM---------EISAKIPLEKELNKIRPVVALAAS 1494
            +YTE  +Y QL YF  L D +R   +          +   K+    E N++R        
Sbjct: 1373 EYTEKAIYNQLVYFASLWDVERARTRAAGADSGMTSQDREKVLALAEHNRVR--FGTVKG 1430

Query: 1495 TVQRIRERCAYGWVKLNDI 1513
             V R  ++C   WV ++ +
Sbjct: 1431 IVDRYLDKCGRQWVAMDSL 1449


>gi|295662386|ref|XP_002791747.1| DNA polymerase alpha catalytic subunit [Paracoccidioides sp. 'lutzii'
            Pb01]
 gi|226279873|gb|EEH35439.1| DNA polymerase alpha catalytic subunit [Paracoccidioides sp. 'lutzii'
            Pb01]
          Length = 1458

 Score =  607 bits (1566), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 427/1217 (35%), Positives = 624/1217 (51%), Gaps = 140/1217 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+ LD  E       G L LFGKVK     ++ S  V V N+ R +Y +P  
Sbjct: 338  VEEDGSLLFFWLDYVEI-----NGNLCLFGKVKNKKSGSYVSAFVKVDNILRKLYFLPRQ 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+A  +    V+ + +    R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYKEVAELMSAAKVTKHKIKESVRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   +IP    Y LK+ Y +    LP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELPDIPKEATY-LKLMYSYDSSSLPVDVKGETFSHVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V  +S  + E P +T+ ++  +T  N +
Sbjct: 494  WLKLEN-ADFTAVNGASWCKLECQVSQPKFITVVPNSDSL-ESPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EI+ AS      A++   +  ++   P  L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEIIVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRPT-GSSYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++        E SE+ LL++ M    K+D DVL+GH +   D ++LL+R    + P  
Sbjct: 602  --TRKHRGTFMLEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNILLNRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGR+KRSE PK L +G + F           +AGRLLCD    +    +++  S+S
Sbjct: 659  -WHRIGRMKRSEWPKNLSRGASFFAE------RKLVAGRLLCDIANDMGKSLMVKCQSWS 711

Query: 742  LTQLAKTQLN--KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM  I + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNTRRDIDNEVALKTWATSKEGLMNYISHCEADTYFIAALVLKLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+         +Q S    
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYA-----SKYQQMSQANE 826

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED                    D    K+   Y GGLV EP++GLYDKYIL++DFNSLYP
Sbjct: 827  ED-------------------EDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+       +  VP +P+ +  G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRALVAENENEEKVPEVPTEQAPGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+ LA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D+I +A  +     + VN++YK LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGDDPDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L ++ E M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRELTEKMKELAIPVQKYVIYTKLSKGPDEYPNKETMPPAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S+ SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVISYIVT--SGDSNTSSLPPAKRSYTLQDVIKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILS 1326
             I GT   RLA+CLGLD  K+Q   S T   D  +  +F     + D  R++    L L 
Sbjct: 1223 PIPGTDAVRLAECLGLDVRKYQINISNT--RDQQNMEIFPLESQIPDSIRFKDASRLTLR 1280

Query: 1327 CPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ 1386
            C  C        + SS  M  +               L CP          IS   I  Q
Sbjct: 1281 CRFCHERTFFEGLSSSAEMCTAN-------------GLVCPNTACGKPFNIIS---IVAQ 1324

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVR 1443
            ++ Q     + YY+G ++CDD +C   T  +++   R +G   R         C GR+  
Sbjct: 1325 LESQIRAQTAKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGRMGF 1378

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISA----------KIPLEKELNKIRPVVALAA 1493
            +YTE  LY QL Y+  L D    ++K +++A          KI +  E N+ R       
Sbjct: 1379 EYTEKQLYNQLLYYARLWD----VDKAKVAADKEPDPEKRDKIMVMVEWNRAR--FGTVK 1432

Query: 1494 STVQRIRERCAYGWVKL 1510
              V    ++C   WV +
Sbjct: 1433 GVVDAYLKKCGRQWVDM 1449



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++   +  Y I+ +  IYD V E+ Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELRALRASGKKRLTT--YEIEDDGDIYDEVDEEGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
           DD G GY D+G+EE W+ +    S      DG     K +  KR ++E++Q   K N
Sbjct: 58  DDAGEGYADDGREE-WNDSRRYYSDS----DGDELPLKGKAAKRKREEDDQRKEKIN 109


>gi|213404058|ref|XP_002172801.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces japonicus
            yFS275]
 gi|212000848|gb|EEB06508.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces japonicus
            yFS275]
          Length = 1314

 Score =  607 bits (1566), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 406/1114 (36%), Positives = 590/1114 (52%), Gaps = 112/1114 (10%)

Query: 360  VKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRIS-PMAFRKKLQDV 418
             +   T+ S  V +  +QR +Y +P  PL   DE    EKD E S  S P      L +V
Sbjct: 251  ARENKTYSSAFVKLDGIQRHLYFLPR-PL-DVDE----EKDEEASASSTPTPTHTSLDEV 304

Query: 419  ALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK 478
                + E++       +  +     + +YAF   ++PA   Y L + Y +K P  P DL 
Sbjct: 305  ----QAEVSALFSKSGIHEWKCKVDRFKYAFELPDVPAETEY-LHVLYSYKYPAFPFDLS 359

Query: 479  GENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKD 536
            G+ F  + GTH++  E F++++ V GP WL I    F S    +  SWC+ E     P  
Sbjct: 360  GQTFSRVFGTHTALFEQFVLEKDVMGPCWLRIRSPDFDSV---KNTSWCRLETACAIPNI 416

Query: 537  IRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKK 596
              V  + K  A  PP+TV ++  +T+ N + +  EI S S        I++P++A +   
Sbjct: 417  CVVKGTEKVPAVTPPLTVMSLAFRTLVNHQVNKQEIFSISARVYENVNIESPIVAEDTAS 476

Query: 597  PGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDS 656
                + FTV+R L   IFP GF  EA     K+ SN+ C E +E ALLN  + +L   D 
Sbjct: 477  ----TSFTVIRPLKQ-IFPNGFEAEA----RKSKSNIRC-ERTEIALLNYFLEKLQNADP 526

Query: 657  DVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM 716
            DVL+GH+       +LL R +  R+ +  W +IGRL+R E PK      I   G+   I 
Sbjct: 527  DVLIGHDFE-VSYSILLSRMREKRIRN--WHRIGRLRRYEWPK------ITNRGSQQFIE 577

Query: 717  SCIA-GRLLCD-TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF-QTLESLM 773
              +A GRLLCD +    R +++  S+SL+++ + +LN  R+E+     L+ +  T + L+
Sbjct: 578  RQLASGRLLCDLSNDLGRSMIKTQSWSLSEIVQKELNIKRQEIDQDKALQSWTDTPKGLL 637

Query: 774  ELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAK 833
            + + + E D +    L F   +L L++ LTNI+GN W +TL G RA+R EY+LLH F+  
Sbjct: 638  DYLLHCELDTYFISALAFKTQILQLSKNLTNIAGNSWSRTLTGTRAERNEYILLHEFKKN 697

Query: 834  KYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAG 893
             YI+PDK           Q  N     R V+ +  E+   D      D  KG        
Sbjct: 698  GYILPDK-----------QYQN----SREVDVVDPEETPADTLGKKKDKYKGG------- 735

Query: 894  GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----SPDG--LVPHLP-SSK 946
             LV EPKKGLYD YIL++DFNSLYPSIIQEYNICFTTV R    S +G  +VP +P SS 
Sbjct: 736  -LVFEPKKGLYDTYILVMDFNSLYPSIIQEYNICFTTVHRKHCTSKNGADVVPDVPNSSL 794

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL--DIQQQALKLTANSMYGCLGFSNSR 1004
              G+ P L+ NLV RR+ +K  +K  +   +Q+L  DI+QQALKLTANSMYGCLG++ SR
Sbjct: 795  EQGIFPRLIANLVNRRKQIKALLKDKNATPVQRLQWDIKQQALKLTANSMYGCLGYTKSR 854

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
            FYA+PLA L+T +GRE+L ST +L  + + L+VIYGDTDS+MI++  +++  A  I  + 
Sbjct: 855  FYARPLAVLVTYKGREVLTSTKELA-DLMGLQVIYGDTDSVMINTNANNMTDALRIGNEF 913

Query: 1065 IQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
               VN++Y+ LEID+D +Y+RMLL  KKKYAA+++   D     V++ KGLDM RR++  
Sbjct: 914  KNRVNERYRKLEIDIDNVYQRMLLHAKKKYAALQM---DAQGKPVLDIKGLDMKRREFCA 970

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L+KE   + L QILS    E V+ +IH  L+   + MRSG+ +  K++I   L K PE+Y
Sbjct: 971  LAKEASKYSLDQILSGELTETVISNIHAYLVDFAQKMRSGKFSANKFIIFNKLGKAPESY 1030

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
            P+ K  P VQVAL+ K  G       GD +P+II     T + S    A RA  P ++  
Sbjct: 1031 PNGKTMPFVQVALKKKARG--ENVRVGDVIPFII-----TGNESQGHPADRAVSPQQVMD 1083

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
                  ID +YY S QI P + RL A +EGT   RLA+CLGLDP K+ +   E   S   
Sbjct: 1084 QSSNLTIDYEYYLSHQILPPLERLVAPVEGTDRARLAECLGLDPRKYYT--PEHADSSAF 1141

Query: 1305 SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTL 1364
            + +   + D++R+    PL+L CP C               S + K      E  F   +
Sbjct: 1142 ARIESTLTDDQRFSSARPLLLICPECKGE------------SFNMKTVAEIREVLFADNV 1189

Query: 1365 RCPKCPEEVEAGRISPGMIAN-QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
             C       + G     +  N Q   Q   +++ YY+G+++CDD +C   T  +N+    
Sbjct: 1190 EC-------DCGYEYSNLTVNLQFLGQLRNYLNHYYEGILVCDDSSCGNKTRQMNV---- 1238

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
                G  C   P C G +  +  +  LY Q+ + 
Sbjct: 1239 ---YGRRCCA-PGCRGHMHFEIDDKSLYNQIKFL 1268



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 14  SRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRREE 72
           SR  +ASAR EAL +L+ALR  G+       Y  + ENP +YD+V EDEY  +V R+R +
Sbjct: 27  SRSGKASAR-EALSQLRALRESGKTRASV--YETE-ENPELYDSVDEDEYRRVV-RKRLD 81

Query: 73  ARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKR 122
              F+VDD+G GY + G +E W     P+SSDDE+ +  +  KK+   +R
Sbjct: 82  EDDFVVDDNGAGYVENGYDE-WGPRN-PTSSDDEADENAKDRKKRSSSQR 129


>gi|194742070|ref|XP_001953530.1| GF17808 [Drosophila ananassae]
 gi|190626567|gb|EDV42091.1| GF17808 [Drosophila ananassae]
          Length = 1481

 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 424/1192 (35%), Positives = 631/1192 (52%), Gaps = 123/1192 (10%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVV 373
            D+ +  +   E +  +     L F+  +A E  +    G ++LFG+   G    S CV V
Sbjct: 337  DDFEKSVTTGEQDAPISSSEQLRFWFWEAWEDPTKLP-GEVFLFGRTADGK---SVCVRV 392

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            +N+ R +Y +P   L   D I K           P   +  + D+     +E+A +L   
Sbjct: 393  QNINRVLYLLPRQYLL--DPISK----------EPTKEKVTVADIYKEFDSEVATELKLD 440

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP--LPADLKGENFCSLLGTHSS 491
               +  VS     +A G  ++P   +Y L+++Y  K PP  L A+ K  +   + G+ ++
Sbjct: 441  TFRSRKVSKNFAHHAIG-IDVPQTCDY-LEVHYDGKKPPPTLAANKKYNSIAHVFGSTTN 498

Query: 492  ALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPP 551
            ALE FL+ RK+KGP WL +S F   PAP  +SWCK E+TV  PK++ +       A  PP
Sbjct: 499  ALERFLLDRKIKGPCWLQVSGFKLSPAP--MSWCKTEVTVSEPKNVELVQDKGKPAPPPP 556

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            +T+ A+N++T  N +   NEI   S++  ++  ID P       +P    H   + +   
Sbjct: 557  LTLLALNVRTCMNPKTMKNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPAV 611

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
              +P+  N E     +K  S  +    SE+ LLN  + +  ++D+D++V  +     L+V
Sbjct: 612  VSWPLDLNLEL----AKYKSTKIYKHDSEKVLLNWFLAQYQQIDADLIVTFDAMDCQLNV 667

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            +  +    ++P   WS++GRL+ ++          FG      ++    GR++CD    +
Sbjct: 668  ITDQIVALKIPQ--WSRMGRLRMTQS---------FGKR----LLDHFVGRMVCDVKRSA 712

Query: 732  RDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSME 788
             + +R  SY L  L +  L     +R EV   D+L+M++  ES+ +LI     D    + 
Sbjct: 713  EECIRARSYDLQTLCQQVLKLKESERMEVNGDDLLEMYEKGESITKLISLTMQDNSYLLR 772

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK       K
Sbjct: 773  LMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK-------K 825

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
             + +R     E+  + + T                  ++  AYAGGLVLEP +GLY+K++
Sbjct: 826  ASNRRGGGDPENTIIADAT---------------LPVRKKAAYAGGLVLEPMRGLYEKFV 870

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKT-TGVLPELLKNLVQRRRMVK 966
            LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SK   G+LP  LK LV+ R+ VK
Sbjct: 871  LLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPESKVEAGILPLQLKRLVESRKEVK 930

Query: 967  TWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
              M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL 
Sbjct: 931  KLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILT 989

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
            +T  +VQ  +N +V+YGDTDSIMI++ I D  +   I  ++ Q VNK YK LE+D+DG++
Sbjct: 990  NTQQMVQK-MNYDVVYGDTDSIMINTNITDYDQVYKIGREIKQSVNKMYKQLELDIDGVF 1048

Query: 1084 KRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
              +LLLKKKKYAAVK+  KD  G      E KGLD+VRRDWS L+  VG   L ++L+E+
Sbjct: 1049 ACLLLLKKKKYAAVKLS-KDSKGNLKREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLAEK 1107

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E+ ++++H  L K+++ +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ +
Sbjct: 1108 QLEEKLDAVHTQLEKIKQQINEGAVPLPLFVITKQLTRAPQEYANSASLPHVQVALRMNR 1167

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQQ 1260
               +     GD V Y+IC +     G++    QRA H DELK   D K  +D +YY  QQ
Sbjct: 1168 ER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDELKSSEDKKLQLDTNYYLGQQ 1221

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEER 1316
            IHPVV+R+   +EGT   R+A+ LG+DP+KF    Q    E        SLL      + 
Sbjct: 1222 IHPVVTRMVEVLEGTDASRIAESLGMDPTKFRQNAQRAQREIAEQSEGESLLKTTL--QL 1279

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWR---TLRCPKCPEEV 1373
            YR CEP    C +C          +   M+ + +P    T     +      C   P + 
Sbjct: 1280 YRLCEPFRFQCMACK---------TEQLMASAYRPGASHTHVPVLQQCSNAECQTAPIQY 1330

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
             A       + NQ++      V  +YK  ++CD   C Y T +  L+   D  R    P 
Sbjct: 1331 LAS------VRNQLQLDIRRHVQRFYKNWLVCDHPDCNYNTRTHTLK--KDVRR----PL 1378

Query: 1434 YPRC-NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
              +C +G L+R+YTE DLY QL Y   + D    + K ++  K  L  EL +
Sbjct: 1379 CQKCKSGSLLRQYTERDLYNQLCYLRFMFD----LGKQQLQQKPTLTPELEQ 1426


>gi|323449691|gb|EGB05577.1| hypothetical protein AURANDRAFT_30667 [Aureococcus anophagefferens]
          Length = 1117

 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 428/1172 (36%), Positives = 607/1172 (51%), Gaps = 146/1172 (12%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
             Y LD  EQ      G++YL GKVK      + S CVVV++++R  + +P          
Sbjct: 1    MYWLDVVEQ-----SGSIYLVGKVKLEGEDAYASACVVVRDVERSFFVLPR--------- 46

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
                 D E     PMA       V    + E+  + +    + +    VKR Y FG   +
Sbjct: 47   ----VDPESGERYPMA------KVWAETRAELVPRCVP-KQAPFKCKGVKRGYCFGDESV 95

Query: 455  PAGE-NYVLKINY--PFKDPPLP-ADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
            P  +    LK+ Y   F+ PP    D  G     +LG  ++ LELFLVKRK+ GP W+ +
Sbjct: 96   PRDDATEYLKVKYLSKFRPPPRGLCDRGGRVIEKILGAGATPLELFLVKRKLMGPCWIRV 155

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
             K  +     +VSWC  E+ V SPK I ++    + A  PP+  T I+LKTV N +   +
Sbjct: 156  DKPKA--HSPKVSWCAVEVEVASPKAITLARDCPYAA--PPLVCTTISLKTVVNPKTHQH 211

Query: 571  EIVSASVVCCHKAKID--TPMLASEWKKPGMLSHFTVVRKLDGG------IFPM--GFNK 620
            EIV+ S +      ID  TP                     DGG      +F    G + 
Sbjct: 212  EIVAVSALTHRGVGIDGATP---------------------DGGRGEDERLFAPSPGASH 250

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
            +A  R    G+  L    +ERAL++ L+  L + D DVLVGHNI GF+LDVLL RA   +
Sbjct: 251  KAGSRRWTCGTVTLA--PNERALVSCLLSRLQQDDPDVLVGHNILGFELDVLLGRALHLK 308

Query: 681  VPSSMWSKIGRLKRSEMP---KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE 737
            +  + WSK+GRLKR++ P   K   GR  F + A+        GRL+CDT+L +R+ +R 
Sbjct: 309  L-GNAWSKVGRLKRNKPPSRWKAASGRDTFHASAT-------CGRLICDTYLAAREHVRG 360

Query: 738  VSYSLTQLAKTQLN--KDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLS 794
             +              + R+ + P DV  +   T E +  L+ +   D  L   LM  L 
Sbjct: 361  ATTYALAALAATQLGVRGRRALEPQDVAHLLGSTKEHVAGLLRHSAEDCRLVERLMLRLQ 420

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            ++PL++QLT ISGNL  +TL+G RA+R+EYLLLH F   KYI P+K  Y           
Sbjct: 421  IMPLSKQLTAISGNLLARTLKGHRAERIEYLLLHEFHRIKYIAPEKQRY----------- 469

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                     +E +++D+N       + H  G+   AY GGLVLEPKKG YD ++LLLDF 
Sbjct: 470  ---------DEDSDDDSNGKKGKKRDRH-AGRAKAAYQGGLVLEPKKGFYDSHVLLLDFA 519

Query: 915  SLYPSIIQEYNICFTTVERSPDGLVPHL---PSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
            SLYPSIIQEY+ICFTT++ S   L   L   P++K   VL    K L+ RRR VK  +K 
Sbjct: 520  SLYPSIIQEYDICFTTIDWSKYALPEKLEDAPAAKRRAVL----KALIDRRREVKQLIKK 575

Query: 972  ASGLK-IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                K ++  +I+Q ALKLTANSMYGCLGFS+SRF+AKPLA L+T  GR+ L++T D+ +
Sbjct: 576  EKNPKTLETYNIRQMALKLTANSMYGCLGFSHSRFFAKPLAALVTSLGRDTLQATADVAE 635

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY--KRMLL 1088
              L LEVIYGDTDSIMI++  DD+A  K +  KV + VNK+Y+ LE++LDG++    +L 
Sbjct: 636  KELGLEVIYGDTDSIMINTRTDDLAVVKDLGNKVKKAVNKRYRLLELELDGIFKAMLLLK 695

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
             KK     V    K G      E KGLD+VRRDW  LSK  G   L  +LS    E +V 
Sbjct: 696  KKKYAALVVNEDPKTGQLSYKKETKGLDLVRRDWCPLSKATGTAILDHLLSGEGSEAIVS 755

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            +++  L  V +  RSG V +  YVIT+ L KP E YPD+K+QPH++VA  + + G +   
Sbjct: 756  AVNAVLEDVGQRARSGDVDVADYVITRGLNKPVEKYPDSKSQPHLRVAKAMLKEGRAV-- 813

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL--KKGDGKWMIDIDYYASQQIHPVVS 1266
            + GD +PY+IC      +GS   +A R+ HPD +  K    K  +D+++Y +QQI P ++
Sbjct: 814  NVGDHIPYVIC------TGSDKNVADRSYHPDAVATKPSLEKPKVDVEWYLTQQILPPIA 867

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS-DPSSSLLFAV------GDEERYRG 1319
            RLC  I G S   +AD LGLD  KF +  + + S+ D +++ + +        DEER+  
Sbjct: 868  RLCEPIAGMSRASIADKLGLDARKFAAAMARSQSALDEANANMRSFTPASLQSDEERFAD 927

Query: 1320 CEPLILSCPSCSSTFDCPAVCSSICMSV-SEKPSKPETEYNFWRTLRCPKCPEEV----- 1373
            C+PL++ C SC   +  P         + + + +    +      L C  C  ++     
Sbjct: 928  CQPLVVECGSCKLRWPLPLEQRGARARLEAARDAATPAKAAACAALSCGHCGAKLLGYKN 987

Query: 1374 EAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPN 1433
             A   S   +A Q+  +A   +  YY G M+CDD  C   T  L+   +    RG     
Sbjct: 988  AASCFSRVSVALQMATRAS--LKDYYDGWMVCDDSACGARTRQLSCAGVRCLSRG----- 1040

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR 1465
               C GRLV +  E  +Y QL Y+  L D  R
Sbjct: 1041 ---CKGRLVPEANEKRIYTQLQYYRALFDDDR 1069


>gi|367051082|ref|XP_003655920.1| hypothetical protein THITE_2120214 [Thielavia terrestris NRRL 8126]
 gi|347003184|gb|AEO69584.1| hypothetical protein THITE_2120214 [Thielavia terrestris NRRL 8126]
          Length = 1484

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 411/1166 (35%), Positives = 611/1166 (52%), Gaps = 132/1166 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNG 386
            +++DGSL  +  D  E       G+L LFGKV    T H  SC V + N+ R +Y +P  
Sbjct: 343  IEEDGSLKMFWTDYTEV-----NGSLCLFGKVLNKKTGHYVSCFVKIDNILRKLYFLPRK 397

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                     ++ +  E +    M          + +  E+   +  +NV  + +    R+
Sbjct: 398  --------HRVRRGVETTEQVEM----------MDVYNEVDAIMTKMNVDMHKIKVCTRK 439

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   EIP+   Y LK+ YP+  P +    KGE F  + GT+++  E F++ +K+KGP 
Sbjct: 440  YAFELPEIPSEAQY-LKLLYPYTRPAIELGTKGETFSHVFGTNTALFEQFVLWKKIKGPC 498

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A +  S C+ E+ V+ P  +   S      E PP+T+ ++ ++T+FN +
Sbjct: 499  WLKIED-ADFGALKNASHCRLEVLVEHPNMVATLSDGDSF-EAPPLTLMSLAMRTMFNAK 556

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI++ S        +     A   K P     FT++R      FP+GF K A DR 
Sbjct: 557  DNKQEILAISARVYQDVSLSDTTPAD--KLP--CRTFTLIRP-PAAAFPLGFEKLAKDRR 611

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++     E  +L+  + ++  +D D+++GH + G D  VLL+R  +    +  W
Sbjct: 612  K----GLIKLMKQESDILSFFLAQIDLVDPDIILGHQLEGVDYSVLLNR--LYEKKTHQW 665

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----S 739
            S++GRL+RS  P    + G  +F           +AGRLLCD    + D  + V     S
Sbjct: 666  SRLGRLRRSAWPASIGKVGGNVFAE------RQIMAGRLLCD---LANDAGKSVMFKCQS 716

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L+ D  R+++     LK +  + E LM+ + + E D +    L     +L
Sbjct: 717  WSLTEMCNLYLSGDNHRRDIDNELALKTWASSKEGLMDYLSHAEADTYFIAALALRTQIL 776

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT++LTN++GN W +TL G RA+R EY+LLH F  KKYI PDK  +       K R+  
Sbjct: 777  PLTKELTNLAGNSWARTLTGTRAERNEYILLHEFYGKKYICPDKQPF-------KGRAR- 828

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
             VED N EE   E    D                    LV EP+KGLYD+++L++DFNSL
Sbjct: 829  -VEDENQEEDGGEGKKKDKYKGG---------------LVFEPEKGLYDRFVLVMDFNSL 872

Query: 917  YPSIIQEYNICFTTVERS----PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-- 970
            YPSIIQE+NICFTTV+R+     +  VP +P+ KT  VLP+L+  LV RRR VK+ MK  
Sbjct: 873  YPSIIQEFNICFTTVDRTFSSDDEDAVPPVPTDKTPAVLPKLIAGLVDRRRQVKSLMKDK 932

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST DL +
Sbjct: 933  NATPEQLATWDIRQLALKLTANSMYGCLGYTKSRFYARPLAMLTTFKGREILRSTKDLAE 992

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            + ++L+VIYGDTDS+MIH+ +D++A A  +  +   EVNK+Y+ LEID+D +++R+LL  
Sbjct: 993  S-MSLQVIYGDTDSVMIHANVDNVADALKVGREFKAEVNKRYRRLEIDIDNVFRRILLQA 1051

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAAV +   +G   E +E KGLDM RR++  LS+EV    L +ILS    E  V+ I
Sbjct: 1052 KKKYAAVNLVETNGKFVEKLEVKGLDMKRREYCPLSREVSKRILDEILSGNDTEVSVQHI 1111

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H  L ++   MR+  +  +KY+I   L K P+ YP+  + P VQVALR    G +     
Sbjct: 1112 HEYLREISGKMRAQAIPAQKYIILTQLGKAPKEYPNGDSMPQVQVALREMARGKTM--RK 1169

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V YII    G S  +S   A+RA  P ++ K D     D+++Y  +QI P V RLCA
Sbjct: 1170 GDVVSYIIT---GDSKTTSEPAAKRAYTPQDVLKADSGLTPDVEWYIGKQIFPPVERLCA 1226

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLF-----AVGDEERYRGCEPLIL 1325
            +I GTS  +LAD LGLD  ++ +  +   SS  +  L        + D  R++ C  L L
Sbjct: 1227 NIVGTSTAQLADNLGLDVRRYANNSASNSSSSSNRDLDIHPLESQIPDAIRFQNCARLTL 1286

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IA 1384
             C +C ++     +  S   +    P+           + CP C        + P + I 
Sbjct: 1287 RCRACKASAPFEGLLGS---ADRITPA----------GVACPTC------HAVLPTLSIV 1327

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNG 1439
             QV+       + YY+G ++CDD +C   T  + +        G  C   P+     C G
Sbjct: 1328 AQVEAALRAQTARYYEGWLVCDDASCGNRTRQMGV-------YGARCLG-PKGLARDCLG 1379

Query: 1440 RLVRKYTEADLYKQLTYFCHLLDTQR 1465
            R+  +  E D+Y QL YF  L D  +
Sbjct: 1380 RMRYEVGERDIYNQLVYFASLWDVDK 1405



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  L+ALR+ G++  D+  Y +     +Y+ V E++Y  +V R R     F+VDD+G GY
Sbjct: 10  LAELRALRQSGKKVFDT--YKVAEVEDLYEEVDENQYKQIV-RDRLNQDDFVVDDNGEGY 66

Query: 86  GDEGQEEDWSVAGLPSSSDDESL---DGQRSIKKQRIEKRGKKENN 128
            D+G+EE   V    S SDD++L      R  KKQR E++ K++ N
Sbjct: 67  ADDGREEWDRVRAYESESDDDALLVRGKDRKSKKQRQEEQAKRDAN 112


>gi|225555681|gb|EEH03972.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus G186AR]
          Length = 1458

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 422/1214 (34%), Positives = 613/1214 (50%), Gaps = 134/1214 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++++GSL F+ LD  E       G+L LFGKVK   T  + S    + N+ R +Y +P  
Sbjct: 338  IEENGSLLFFWLDYVEV-----NGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+ + +       +      R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYNEVDDLMSRTKAGTHKSKVSTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF  A++P    Y LK+ Y +  P LP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELADVPKEGEY-LKVMYSYDKPALPLDVKGETFSRVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V+ +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKLED-ADFTAVNGASWCKLECQVSEPKLITVAPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EI+ AS      A++   +L ++      L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEILVAS------ARVYENVLLTDTTPAEKLPCKTFTVMRP-SGHNYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++     L  E SE+ LL++ M    K+D DVL+GH +   D ++ L R    + P  
Sbjct: 602  --TRKHRGTLMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNIFLSRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGRLKRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRLKRSEWPKSLSRGSSFFAE------RKLVAGRLLCDIANEMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM    + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYTNHCEADTYFIAALVLRLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+   ++     Q S    
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYAGKQQ-----QMSQANE 826

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED +  +   +D                      GGLV EP+KGLYDKYIL++DFNSLYP
Sbjct: 827  EDEDGADKKKKDKY-------------------KGGLVFEPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+          VP +P +++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRTSVVENENQENVPEVPKAQSMGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDSDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L  + E M+   + L+KYVI   L+K P  YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRDITEKMKEYSIPLQKYVIYMKLSKRPNEYPNKETMPAAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLAPAKRSYTLQDVVKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQ-----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
             I GT   RLA+CLGLD  K+Q     S+  + M   P  S    + D  R++    L L
Sbjct: 1223 PIPGTDAVRLAECLGLDVKKYQINTSSSRDQQNMEIFPLES---QIPDSIRFKDAVRLTL 1279

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C  C        +C S  M                 T     CP        S   I  
Sbjct: 1280 RCRFCHERTCFEGLCLSTEMC----------------TANGLICPSSTCGKPFSVISIVA 1323

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C G++ 
Sbjct: 1324 QLETQIRAQTSKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGQMG 1377

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIE------KMEISAKIPLEKELNKIRPVVALAASTV 1496
             +YT+  LY QL YF  L D  +  E        E   K+    E N+ R         V
Sbjct: 1378 FEYTDKQLYNQLLYFARLWDVDKAKEAAAKETNTEKRDKVIAMVEWNRSR--FGTLKGVV 1435

Query: 1497 QRIRERCAYGWVKL 1510
                ++C   WV +
Sbjct: 1436 DAYLKKCGRQWVDM 1449



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  LKALR  G++      Y +K E  IYD + ED Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELKALRAAGKKR--LATYEVKDEGDIYDEIDEDGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLD-GQRSIKKQRIEKRGKKENNQN 130
           DD G GY D+G+EE        S SD + L    ++ K++R E + +KE   N
Sbjct: 58  DDTGEGYADDGREEWNDSKHYYSDSDGDELPLTGKAAKRKREEDQQRKEKINN 110


>gi|195111871|ref|XP_002000500.1| GI10263 [Drosophila mojavensis]
 gi|193917094|gb|EDW15961.1| GI10263 [Drosophila mojavensis]
          Length = 1487

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 414/1175 (35%), Positives = 627/1175 (53%), Gaps = 103/1175 (8%)

Query: 352  GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            G ++LFG+   G    S CV V+N+ R +Y +P   L   D I K           P   
Sbjct: 374  GEVFLFGRTADGK---SICVRVQNINRVLYLLPRQYLL--DPITK----------EPTKQ 418

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
            +    D+     T IA +L      +  VS     +A G  ++P   +Y L+++Y  K P
Sbjct: 419  KVTAADMYKEFDTHIATELKLDTFRSRKVSKNFANHAIG-IDVPQTCDY-LEVHYDGKKP 476

Query: 472  -PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEIT 530
             P   + K ++   + G +++ALE FL+ RK+KGP WL IS F+  PAP  +SWCK ++T
Sbjct: 477  APNVLNKKYDSIAHIFGANTNALERFLLDRKIKGPCWLQISGFNINPAP--ISWCKTDVT 534

Query: 531  VDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
            +  PK++ +          PP+T+  +N++T  N +   NEI   S++  ++  ID P  
Sbjct: 535  ITEPKNVELVLEQGKPTPPPPLTLLTLNVRTSMNPKTLKNEICMISMLTHNRFYIDKPA- 593

Query: 591  ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
                 +P    H   + +     +P+  N +     +K  S  +    SERALL+  + +
Sbjct: 594  ----PQPAFNRHMCALTRPAVSTWPLDLNLQL----AKYKSTKIYKHDSERALLSWFLAQ 645

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
              ++D+D++V  +     L+V+  +    ++P   WS++GRL+ ++          FG  
Sbjct: 646  YQQIDADLIVTFDAMDCQLNVITDQIVALKIPQ--WSRMGRLRFTQ---------TFGKR 694

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQ 767
                ++    GR++CD    + + +R  SY L  L +  L     +R +V   D+L+M++
Sbjct: 695  ----LLDHFVGRMVCDVKRSAEECIRARSYDLQTLCQQVLKLQESERMDVNADDLLEMYE 750

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              E++ +LI     DA   + LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLL
Sbjct: 751  KGENITKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLL 810

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS-HNDHRKGK 886
            HAF  K YIVPDK    +      Q              T+ DA   NDT+        +
Sbjct: 811  HAFHEKNYIVPDKLPQRRGAVANTQ--------------TDPDATTGNDTTVAAGSGAAR 856

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLP-S 944
            +  AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP S
Sbjct: 857  KKAAYAGGLVLEPLRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPHDADQLPVLPDS 916

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTAS-GLKIQ-QLDIQQQALKLTANSMYGCLGFSN 1002
            S   G+LP  L+ LV+ RR VK  M       ++Q Q  I+Q ALKLTANSMYGCLGF++
Sbjct: 917  SAEPGILPMQLRRLVESRRQVKKLMAVPDLSPELQMQYHIRQMALKLTANSMYGCLGFAH 976

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            SRF+A+ LA L+T +GREIL +T  LVQ  LN +V+YGDTDS+MI++ I D  +   I  
Sbjct: 977  SRFFAQHLAALVTHKGREILVNTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIGH 1035

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRD 1121
             + Q VNK YK LE+D+DG++  +LLLKKKKYAAVK+ +   G+     E KGLD+VRRD
Sbjct: 1036 TIKQSVNKLYKQLELDIDGVFACLLLLKKKKYAAVKLTKNAKGVLIREQEHKGLDIVRRD 1095

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WS L+  VG   L ++LS++  ED ++++H  L ++++ +    V L  YVITK LT+ P
Sbjct: 1096 WSQLAVMVGKAVLDEVLSDKPLEDKLDAVHAQLGRIKDQIAKSAVPLPLYVITKQLTRAP 1155

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            + Y ++ + PHVQVALR+ +   +     GD V Y+IC +     G++    QRA H DE
Sbjct: 1156 QEYANSASLPHVQVALRMNRER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDE 1209

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM-- 1299
            LK  +    +D +YY   QIHPVV+R+   +EGT   R+A+CLG+D SK++         
Sbjct: 1210 LKSSE-TLKLDTNYYLGNQIHPVVTRMVEVLEGTDASRIAECLGMDSSKYRQNAQRVQRE 1268

Query: 1300 SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
             ++ +          + YR CEP    C SC          +   M+ + +P    +   
Sbjct: 1269 RTEEAEGESLQKTTLQLYRLCEPFRFKCVSCK---------TEQLMASAYRPGPNSSHVP 1319

Query: 1360 FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
              +    P+C        +S   I NQ++    G+V  +Y+  ++CD   C Y T + +L
Sbjct: 1320 VLQQCVNPECQTSPMQYLVS---IRNQLQLCMRGYVQRFYRNWLVCDHPDCNYNTRTYSL 1376

Query: 1420 RLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPL 1478
            RL     R  +C    +CN G ++R+Y+E DLY QL Y   + D    + K ++  K  L
Sbjct: 1377 RL---ELRRPLC---LKCNSGAMLRQYSERDLYNQLCYLRFIFD----LSKQQLHQKPTL 1426

Query: 1479 EKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
              EL +      L   TV++  +  +Y  + L  I
Sbjct: 1427 TPELEQ---AYQLLYDTVEQQFQCSSYVVISLGSI 1458


>gi|350645837|emb|CCD59476.1| DNA polymerase alpha catalytic subunit,putative [Schistosoma mansoni]
          Length = 1644

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 447/1326 (33%), Positives = 644/1326 (48%), Gaps = 281/1326 (21%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKV----KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
            L FY  DAHE       G +YLFGK+    K+G T+ SCC+ +K+++R ++ +P     +
Sbjct: 337  LYFYWFDAHEDFKQLP-GIVYLFGKLYDHSKSG-TYASCCLRIKDLERRIFLLPRTSSPE 394

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
              +I  + KD        M FR       +G                +     ++RYAF 
Sbjct: 395  NGDIPTV-KDVY------MEFRDLTSQYKIG---------------KFRCKTTEKRYAFE 432

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
             A++P   +Y L++ Y      LPADL+G+ F  + GT++S LE  L+  +++GP WL I
Sbjct: 433  YADVPETSDY-LEVRYAASYSALPADLQGKTFSHIFGTNTSFLENLLLDLQLRGPCWLEI 491

Query: 511  SKFSSCPAPQRVSWCK--YEI---------------TVDSPKDIRVSSSSKHVAEVPPVT 553
             K +S   PQ +SWC+  YE+                ++S K    +S    V   PP+ 
Sbjct: 492  -KDASQVQPQ-ISWCQIDYEVIWRSGTGCPITKLSTVIESQKSSDNTSDLMKVPPAPPLC 549

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            + AIN+K+V  K    +EI+S  ++  +   +D P+  S ++     +H+ V+       
Sbjct: 550  LAAINIKSVTQKHSSHSEIISIGLLIDNAYLLDRPIEKSLFQ-----THYLVLAPPKDAA 604

Query: 614  FPMGF------------------------------------NKEATDRNSKAGSNVLCCE 637
             P                                       N    D +   G +V   E
Sbjct: 605  LPYDLRTKLPSYGAQYSPPSSTWLSLNPGVSSTPSTVEKYKNHSNGDSSGAGGVDV---E 661

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS-E 696
             +ERALL R +  L+KLD D+++GH++ G  +++L+ R    +VP   W ++GRL+RS  
Sbjct: 662  PNERALLGRFLTRLHKLDPDIIIGHDLWGHQIELLIQRLNANKVPH--WHRVGRLRRSVN 719

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK--------- 747
             P     R+         I   + GRL+CDT + +R+L+R  +Y+L+ LA          
Sbjct: 720  FPMNLNSRSWI-------IRHSMPGRLVCDTKVSARELVRSRTYNLSDLASQVLGEVTSK 772

Query: 748  ---------------------TQLNKDRK-------------------EVGPHDVLKMFQ 767
                                 ++LN + K                   E+   D+  +F 
Sbjct: 773  KDDKSSQIGVLPKRQIPPILISRLNGNTKFVCDNDLSIMGVGAELADIEIDSADLRCLFS 832

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              + + +LI++  +DA L + L   L VLPL  Q+T+I GN+  +TL G RA+R E LLL
Sbjct: 833  NSDLVRQLIDFCLSDAHLVLRLCHQLQVLPLAMQITSICGNVLSRTLSGGRAERNEALLL 892

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
            HAF    YIVPD     +     +     G++++ VE                D   G+R
Sbjct: 893  HAFTQHGYIVPDPPVSHRGPHSNRHDEWDGIQEQAVE----------------DAGTGRR 936

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS----------P-- 935
             PAY GGLVLEPKKG YDKYILLLDFNSLYPSIIQE+NICFTTV+R           P  
Sbjct: 937  KPAYTGGLVLEPKKGFYDKYILLLDFNSLYPSIIQEFNICFTTVDRDLVATTSSDKEPLD 996

Query: 936  -DGLVP------------------------HLPSSKTTGVLPELLKNLVQRRRMVKTWM- 969
             D +V                          LP  +  G+LP  ++ LV+ R+ VK  + 
Sbjct: 997  LDTIVTTLIATVHGDSNSISVSKSDNDKKIRLPVDQEPGLLPAEIRRLVESRKEVKKLLA 1056

Query: 970  KTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
             T+SG   Q  Q + +Q ALKLTANS+YGCLGF+ SRF A+ LA L+T  GR +L +T D
Sbjct: 1057 NTSSGDAAQRAQWNTRQAALKLTANSVYGCLGFAASRFCARGLAALVTGLGRAVLMNTRD 1116

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            LV+N +N+EVIYGDTDSIM+++   D+  A AI  K+ QEVNK Y+ LE+D DG+Y  ML
Sbjct: 1117 LVEN-MNMEVIYGDTDSIMVNTNTTDLLAALAIGEKIRQEVNKHYRLLELDTDGVYAAML 1175

Query: 1088 LLKKKKYAAV------------KVQFKDGMPYEVI----ERKGLDMVRRDWSLLSKEVGD 1131
            LL KKKYAA+            K+    G+  +V+    E KGLD+VRRDWS L+  VG 
Sbjct: 1176 LLAKKKYAALSVINPVQWATAAKISINQGLTPQVVCTKQEMKGLDIVRRDWSALAISVGR 1235

Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
             C++ +LS    + +++ IH  L +  E +R G++ + +++ITK LTK PE Y DAK+QP
Sbjct: 1236 RCVAALLSGEPKDIILDRIHADLTETAEKVRQGKLPISEFIITKMLTKNPEDYSDAKSQP 1295

Query: 1192 HVQVALRLKQSGYS---TGC---SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL--- 1242
            HVQVALRL  S      TG     AGDTV Y+IC       GS      R   P EL   
Sbjct: 1296 HVQVALRLNGSAADDKKTGTRRLRAGDTVEYVIC-----EDGSGQLATHRGYSPTELTSC 1350

Query: 1243 --KKGD-------GKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS 1293
              K  D       G   ID++YY + QIHPVVSRL A IEGTSP R+ADCLGLDPS ++ 
Sbjct: 1351 LYKVSDDSEPSTKGNLSIDVNYYLAHQIHPVVSRLVAPIEGTSPARIADCLGLDPSGYRR 1410

Query: 1294 KPSETM---SSDPSSSLLFAVGDEERYRGC---EPLILSCP-SCSSTFDCPAVCSSICMS 1346
                T+     + +  + F+ G    +  C   E L ++CP +C      P    +   S
Sbjct: 1411 SNVTTVVDEDDENNPDIGFSSGFSS-FTNCGDVESLYINCPRNCGGP---PIAIKTSAFS 1466

Query: 1347 VSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCD 1406
            V  K            T  CP C   +   + S  ++ N++  +A   +  Y  G M C+
Sbjct: 1467 VVGK------------TWFCPTCSHNLLLSQDSARLVTNRLVFEARRLIVHYQLGWMTCE 1514

Query: 1407 DETCKYTTCSLNL------RLIGDAERGTVCPNYPRC-----NGRLVRKYTEADLYKQLT 1455
            D  C   T SL+         IG+++        P C        L   Y+EA LY+QL 
Sbjct: 1515 DPACAVVTRSLHCPPSSGHHTIGESDGLWARGGRPLCGVCGGQAALKSNYSEAKLYRQLC 1574

Query: 1456 YFCHLL 1461
            +F +L+
Sbjct: 1575 FFRYLV 1580



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 26/188 (13%)

Query: 43  VGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE--EDWSVAGLP 100
           + +  K E P+Y+TV E EY  LV +R E+   +IVDD+G  Y ++G+E  +D       
Sbjct: 4   ISFQEKDEQPVYETVDEAEYAELVRKRLED--DWIVDDEGGDYAEDGREIFDD------- 54

Query: 101 SSSDDESLDGQRSIKKQ----RIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTS 156
           +  D+ES D +   K +     I K  KK  N ++R  + +        G + L A  + 
Sbjct: 55  NDEDEESYDSKPKAKSKMSSTSIPK--KKRLNPDIRASDSAPLRPPVGRGIRSLFAASSG 112

Query: 157 TAMFKKSKDEKVKESESVIDEVLAEFAPD---------EADRERRRRSVSSNIKSFVSVN 207
           +   KK K+ K    +  +D++LAE               D   R+  V+S   S V  N
Sbjct: 113 SNSSKKRKEMKDLSVDPNLDDLLAELESSVTEPKPHHHNPDNLSRKSFVASKRNSGVHGN 172

Query: 208 SVKTNSQL 215
            V T + L
Sbjct: 173 VVNTPTPL 180


>gi|296412426|ref|XP_002835925.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629722|emb|CAZ80082.1| unnamed protein product [Tuber melanosporum]
          Length = 1451

 Score =  604 bits (1558), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 425/1250 (34%), Positives = 636/1250 (50%), Gaps = 152/1250 (12%)

Query: 303  WKEVSGG-NMVLDEGKSGLNCQE-SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV 360
            W   +GG N+       G + ++    +V++DG +  + LD  E       G+L LFGKV
Sbjct: 317  WASFAGGDNVTSSPALDGSDLEKLGPEDVEEDGFIKMFWLDYTEV-----HGSLCLFGKV 371

Query: 361  --KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ----TDEIMKLEKDAEESRISPMAFRKK 414
              K    + S  + +  + R +Y +P    ++    T EI+ +                 
Sbjct: 372  QDKKSGKYVSAFLKIDGILRNLYFLPRETRYKNKLDTGEIVAM----------------- 414

Query: 415  LQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP 474
             QDV      EIA  + +  ++ +   P  RRYAF    IP G +Y LK+ YP+  PP  
Sbjct: 415  -QDV----HDEIAEIMEHHGINFFKAKPSWRRYAFELPGIPKGSDY-LKVLYPYTKPPFS 468

Query: 475  ADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSP 534
             +L G+ F  + GT ++  E F++ R + GP WL I   ++  A +  SWCK EI V  P
Sbjct: 469  HELTGQTFSCVFGTSTALFEQFVLCRNIMGPCWLKIEG-ANFTAVENSSWCKLEIQVAEP 527

Query: 535  KDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEW 594
            + +     +  + E PP+T+ +I L+T  N + +  EI++ S       +I   +  ++ 
Sbjct: 528  QQVTTIGDADSL-EPPPLTLMSIALRTHMNVKDNKQEILAVS------CRIYENISLNDA 580

Query: 595  KKPGMLS--HFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
              P  LS   F+VVR +D  ++P  F K    +N K     +  + +E  LL   + +L+
Sbjct: 581  NAPEKLSCQMFSVVRPIDP-VYPADFEKLV--QNHKG---TISPQRTESMLLTTFLSKLH 634

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            ++D DVL+GH + G D  +LLHR +     ++ W ++GR+KRS  P+   GR    +G+ 
Sbjct: 635  QIDPDVLIGHQLEGVDYGILLHRMK--ERMTTNWHRLGRMKRSAWPQY-GGRM---AGSF 688

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
                  ++GRL+CD    + DL + +     S+SLT++    L   R+++   + L+ + 
Sbjct: 689  FAERHLVSGRLICD---LANDLGKSLTTQCQSWSLTEMCDLILGDKRQDLDNAEALRTWA 745

Query: 768  TL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            T    L++ +++ E D +    +   + ++PL +QLTN++GN W +T+ G RA+R EY+L
Sbjct: 746  TTGRGLLDYVKHCEADTYFIAAIALKIQIVPLAKQLTNLAGNSWARTMSGTRAERNEYIL 805

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH F   KYI PDK  Y K                     T + A+   +   N+    K
Sbjct: 806  LHEFYRNKYICPDK-VYGKGN-------------------TTQKADGAGNEGENEGGGVK 845

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG--LVPHLPS 944
            +   Y GGLV EP+KGLYDK+IL++DFNSLYPSIIQE+NICFTTV+R   G   VP +P 
Sbjct: 846  KKEKYKGGLVFEPEKGLYDKFILVMDFNSLYPSIIQEFNICFTTVKRDDSGEEKVPDVPE 905

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWM--KTASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            ++  G+LP L+  LVQRRR+VK  M  KTA+ ++  Q DI+QQALKLTANSMYGCLG+  
Sbjct: 906  TQVLGILPRLISTLVQRRRIVKNLMKDKTATDVQKSQWDIKQQALKLTANSMYGCLGYPR 965

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            SRFYA+PLA L T +GREILRST +L +  ++L+VIYGDTDS+MI++G+D+ A A  I  
Sbjct: 966  SRFYARPLAMLTTHKGREILRSTKELAE-AIDLQVIYGDTDSVMINTGVDNYADAIKIGT 1024

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
               ++VN++YK LEID+D +++R+LL  KKKYAA+     +G     +E           
Sbjct: 1025 DFKRKVNEQYKLLEIDIDNVFQRLLLHAKKKYAAINYVEINGKLATKLE----------- 1073

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              LSK+     L++I S    E VVE IH  L  + E +R     L KY+I   L K  +
Sbjct: 1074 --LSKDASSHILAEIFSGDDTEVVVERIHEYLRGLAEKVRENAFPLMKYIIYTKLGKSLD 1131

Query: 1183 AYPDA-KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
             Y  + +  P VQVALR    G      +GD V Y+I   +G S      ++ RA  P +
Sbjct: 1132 EYGTSLQTMPQVQVALRKNARGEPV--KSGDVVSYVITGGEG-SEAPDKNVSDRAYAPQD 1188

Query: 1242 LKKGD-GKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
            + K D G   +D ++Y  +QI P + RLC  IEGT   RLA+CLGLD  K+Q   +    
Sbjct: 1189 IMKTDSGLKPVDAEWYLIKQIFPPIERLCGPIEGTDAMRLAECLGLDTRKYQITNAPDQE 1248

Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPA-VCSSICMSVSEKPSKPETEYN 1359
                  L   + DEER++    L L C +C  +F     + S  C S          E  
Sbjct: 1249 DRTIHPLESTLPDEERFKDAVRLQLQCRACGESFQFEGLILSYECCS---------HEGI 1299

Query: 1360 FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
              R   C K         +S   I  QV+ Q     S YY+  ++CDD  C   T  +N+
Sbjct: 1300 VCRNASCNKV--------LSVPSIVAQVECQIRQLTSKYYEAWLVCDDAACGNRTRQMNV 1351

Query: 1420 RLIGDAERGTVC--PN--YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR-------GIE 1468
                    G  C  PN     C G +  +YT+  LY QL YF  L +  +       G E
Sbjct: 1352 -------YGKRCLGPNRLADECRGVMGYEYTDKMLYTQLLYFSSLFNVGKATAKPKDGSE 1404

Query: 1469 KMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI-AISV 1517
            K E    +    +     P   + ++ VQ+  ++C   WV ++ I A SV
Sbjct: 1405 KQETITALARTNQ-----PRFEVISNVVQKYLDKCGRQWVSMDSIFAFSV 1449



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 19/143 (13%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
           R R  GA+ +   E  + L+ L+  G+      GY ++ E   YD V E+EY  +V R+R
Sbjct: 3   RSRRAGAKKTPH-EGFKELRELKASGKTR--LSGYKVEEEEDFYDLVDEEEYKKVV-RQR 58

Query: 71  EEARGFIVDDDGLGYGDEG---------QEEDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
            +   F+VDD G GY D G         +E  W       S D+ S  G RS K ++ E+
Sbjct: 59  LDQDDFVVDDQGEGYADNGMDDWDDDHRREGSWE-----ESEDERSKKGGRSAKARKAEE 113

Query: 122 RGKK-ENNQNVRKPNPSLTAAAA 143
           + +K E   N+RK   S TA  A
Sbjct: 114 QKRKGEQEGNIRKFFNSNTAPTA 136


>gi|258577025|ref|XP_002542694.1| hypothetical protein UREG_02210 [Uncinocarpus reesii 1704]
 gi|237902960|gb|EEP77361.1| hypothetical protein UREG_02210 [Uncinocarpus reesii 1704]
          Length = 1460

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 421/1223 (34%), Positives = 627/1223 (51%), Gaps = 142/1223 (11%)

Query: 325  SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYA 382
            +E  V+ DGSL  +  D + +++GA    L LFGKVK   T  + S  V V N+ R +Y 
Sbjct: 340  AEDAVEADGSLRLFWFD-YTEVNGA----LCLFGKVKNKRTGKYVSAFVKVDNILRKLYF 394

Query: 383  IPNGPLFQ-TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
            +P     Q TDE    E D E                   +  E+   +  L V  + + 
Sbjct: 395  LPRKHDGQNTDE----EADIE------------------NVYQEVDRLMTKLRVGTHKIK 432

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
            P +R+YAF   +IP    Y LK+ Y +  P LP D++GE F  + GT++S  E F++ + 
Sbjct: 433  PCERKYAFELPDIPKEAKY-LKLMYSYAKPALPIDVQGETFSHVFGTNTSLFEQFVLWKN 491

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GP WL I   +   A    SWCK E  V  P+ I   S S+++ + P  T+ ++ L+T
Sbjct: 492  IMGPCWLKIED-ADFTAINGASWCKLECQVSDPELISSISDSENL-DHPTFTLMSLALRT 549

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFN 619
              N +++  EI+ AS      A++   +  ++   P  L    FTV+R   G  +P+GF 
Sbjct: 550  QLNVKENKQEILVAS------ARVYENVSLTDTTPPEKLPCKTFTVMRP-SGSTYPIGFE 602

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
             E     ++        E SE+ LL++ +    K+D DV++GH +   DL +L++R +  
Sbjct: 603  AE-----TRKHRGTFMLEKSEQFLLSKFLALFEKMDPDVVMGHQLQEVDLTILINRLKEK 657

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV- 738
            + P   W +IGR+KRSE PK  +G   FG          +AGRL+CD      D+ + + 
Sbjct: 658  KTPG--WHRIGRMKRSEWPKNFRGAGFFGE------RQLVAGRLICDV---GNDMGKSLM 706

Query: 739  ----SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
                S+SLT++ +  L  D  R+E+     LK +  T E LM  + + E D +    L+ 
Sbjct: 707  TKCQSWSLTEMCQLYLGDDNLRREIDNESALKTWAVTKEGLMNYVSHCEADTYFIAALVL 766

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK++   + KM +
Sbjct: 767  KLQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFYRNKYICPDKYSGKSQPKMEE 826

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
               +    D+  ++                           GGLV EP+KGLYDKY+L++
Sbjct: 827  HEGDDDGADKKKKDKY------------------------KGGLVFEPEKGLYDKYVLVM 862

Query: 912  DFNSLYPSIIQEYNICFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMV 965
            DFNSLYPSIIQEYNICFTTV R        +  VP +P+ +  G+LP L+  LV RRR V
Sbjct: 863  DFNSLYPSIIQEYNICFTTVNRELVSENENEEKVPRVPTDQAQGILPRLISTLVSRRREV 922

Query: 966  KTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            K  MK   A+  ++   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREIL 
Sbjct: 923  KKLMKNKRATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILL 982

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
            +T +L + N  L VIYGDTDS+MI++  D++ +A  +     + VN  YK LEID+D ++
Sbjct: 983  NTKELAEKN-QLRVIYGDTDSVMINTNADNVEEALKVGRDFKRLVNDSYKLLEIDIDNVF 1041

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
            +R+LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L++ILS    
Sbjct: 1042 RRLLLHAKKKYAAINMTEVDGKYVDHLEVKGLDMKRREYCALSKEVSSKLLTEILSGEDT 1101

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            E V+  +++ L  + + M+   + ++KYVI   L+K P+ YP+ +  P  QVALR    G
Sbjct: 1102 EVVLGKVYDYLRDLAQKMKEFTIPVQKYVIFTKLSKRPDEYPNKETMPPAQVALRELARG 1161

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
             +      D + YI+    G +  +S+  A+R+    ++ K D     DI++Y  +QI P
Sbjct: 1162 KT--IRPNDVISYIVT--SGDTETASLPPAKRSYTLQDVMKQDSGLKPDIEFYLLKQIFP 1217

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCE 1321
             + RLCA I GT   +LA+CLGLD  K+Q   S T +        L   + D  R+    
Sbjct: 1218 PIERLCAPIPGTDAVQLAECLGLDVKKYQINTSSTHNQQSLELCPLESQIPDALRFEKAA 1277

Query: 1322 PLILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRIS 1379
               L C +C   + F+  +V S+ C                   L CP    +     IS
Sbjct: 1278 RFTLRCRTCRERTIFEGLSVSSNACTP---------------NGLVCPNTNCKKPFSVIS 1322

Query: 1380 PGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPR 1436
               I  Q++ Q     + YY+G ++CDD  C   T  +++   R +G   R         
Sbjct: 1323 ---IVAQLENQIRAQTTKYYEGWLVCDDPACHNRTRQMSVYGHRCLGPRGRAE------G 1373

Query: 1437 CNGRLVRKYTEADLYKQLTYFCHLLDTQ--RGIEKMEISA----KIPLEKELNKIRPVVA 1490
            C GR+  +YTE  LY Q+ YF  L D    + I + E +     K+    E N+ R    
Sbjct: 1374 CLGRMSYEYTEKQLYNQMLYFSSLWDVDKVKAIAEKEAAGETKDKLLALAEWNRAR--FG 1431

Query: 1491 LAASTVQRIRERCAYGWVKLNDI 1513
                 V    ++C   WV+++ I
Sbjct: 1432 TIRGVVDGYLKKCGRQWVEMDVI 1454



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  L+ALR  G++      Y ++ E  IY+ V E+ Y  +V R+R +   F+V
Sbjct: 2   AAARAK-LAELRALRASGKKR--LATYEVEEEGDIYEEVDEEGYKKVV-RQRLDRDDFVV 57

Query: 79  DDDGLGYGDEGQEE-DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           DD+G GY D+G+EE D   A   S SD+ +L G+ + +K+  +K  K++ N  + K
Sbjct: 58  DDNGEGYADDGREEWDTRQADSGSESDEPALRGKAAKRKREEDKHRKEKINNGINK 113


>gi|325091995|gb|EGC45305.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus H88]
          Length = 1458

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 423/1214 (34%), Positives = 616/1214 (50%), Gaps = 134/1214 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++++GSL F+ LD  E       G+L LFGKVK   T  + S    + N+ R +Y +P  
Sbjct: 338  IEENGSLLFFWLDYVEV-----NGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+   +       +      R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYNEVDGLMSRTKAGTHKSKVSTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF  A +P    Y LK+ Y +  P LP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELAGVPKEGEY-LKVMYLYDKPALPLDVKGETFSRVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V+ +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKLED-ADFTAVNGASWCKLECQVSEPKLITVAPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EI+ AS      A++   +L ++      L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEILVAS------ARVYENVLLTDTTPAEKLPCKTFTVMRP-SGHNYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++     L  E SE+ LL++ M    K+D DVL+GH +   D ++ L R    + P  
Sbjct: 602  --TRKHRGTLMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNIFLSRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGRLKRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRLKRSEWPKSLSRGSSFFAE------RKLVAGRLLCDIANEMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM    + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYTNHCEADTYFIAALVLRLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+   K+ +M++       
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYA-GKQQQMSQ------- 823

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                        AN +++   +  +K K      GGLV EP+KGLYDKYIL++DFNSLYP
Sbjct: 824  ------------ANDEDEDGTDKKKKDKY----KGGLVFEPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+          VP +P +++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRTSVVENENQENVPEVPKAQSMGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDSDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L  + E M+   + L+KYVI   L+K P  YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRDITEKMKEYSIPLQKYVIYMKLSKRPNEYPNKETMPAAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLAPAKRSYTLQDVVKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQ-----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
             I GT   RLA+CLGLD  K+Q     S+  + M   P  S    + D  R++    L L
Sbjct: 1223 PIPGTDAVRLAECLGLDVKKYQINTSSSRDQQNMEIFPLES---QIPDSIRFKDAVRLTL 1279

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C  C        +C S  M                 T     CP        S   I  
Sbjct: 1280 RCRFCHERTCFEGLCLSTEMC----------------TANGLICPSSTCGKPFSVISIVA 1323

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C G++ 
Sbjct: 1324 QLETQIRAQTSKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGQMG 1377

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIE------KMEISAKIPLEKELNKIRPVVALAASTV 1496
             +YT+  LY QL YF  L D  +  E        E   K+    E N+ R         V
Sbjct: 1378 FEYTDKQLYNQLLYFARLWDVDKAKEAAAKETNTEKRDKVIAMVEWNRSR--FGTLKGVV 1435

Query: 1497 QRIRERCAYGWVKL 1510
                ++C   WV +
Sbjct: 1436 DAYLKKCGRQWVDM 1449



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  LKALR  G++      Y +K E  IYD + ED Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELKALRAAGKKR--LATYEVKDEGDIYDEIDEDGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLD-GQRSIKKQRIEKRGKKENNQN 130
           DD G GY D+G+EE        S SD + L    ++ K++R E + +KE   N
Sbjct: 58  DDTGEGYADDGREEWNDSKHYYSDSDGDELPLTGKAAKRKREEDQQRKEKINN 110


>gi|240276502|gb|EER40014.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus H143]
          Length = 1458

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 422/1214 (34%), Positives = 611/1214 (50%), Gaps = 134/1214 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++++GSL F+ LD  E       G+L LFGKVK   T  + S    + N+ R +Y +P  
Sbjct: 338  IEENGSLLFFWLDYVEV-----NGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+   +       +      R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYNEVDGLMSRTKAGTHKSKVSTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF  A +P    Y LK+ Y +  P LP D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELAGVPKEGEY-LKVMYLYDKPALPLDVKGETFSRVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V+ +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKLED-ADFTAVNGASWCKLECQVSEPKLITVAPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EI+ AS      A++   +L ++      L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEILVAS------ARVYENVLLTDTTPAEKLPCKTFTVMRP-SGHNYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++     L  E SE+ LL++ M    K+D DVL+GH +   D ++ L R    + P  
Sbjct: 602  --TRKHRGTLMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNIFLSRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGRLKRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRLKRSEWPKSLSRGSSFFAE------RKLVAGRLLCDIANEMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM    + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYTNHCEADTYFIAALVLRLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+   ++     Q S    
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYAGKQQ-----QMSQAND 826

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            ED +  +   +D                      GGLV EP+KGLYDKYIL++DFNSLYP
Sbjct: 827  EDEDGTDKKKKDKY-------------------KGGLVFEPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+          VP +P +++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRTSVVENENQENVPEVPKAQSMGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDSDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L  + E M+   + L+KYVI   L+K P  YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRDITEKMKEYSIPLQKYVIYMKLSKRPNEYPNKETMPAAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K D     D++YY  +QI P + RLCA
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLAPAKRSYTLQDVVKPDSGLKPDVEYYLLKQIFPPIERLCA 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQ-----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
             I GT   RLA+CLGLD  K+Q     S+  + M   P  S    + D  R++    L L
Sbjct: 1223 PIPGTDAVRLAECLGLDVKKYQINTSSSRDQQNMEIFPLES---QIPDSIRFKDAVRLTL 1279

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C  C        +C S  M                 T     CP        S   I  
Sbjct: 1280 RCRFCHERTCFEGLCLSTEMC----------------TANGLICPSSTCGKPFSVISIVA 1323

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C G++ 
Sbjct: 1324 QLETQIRAQTSKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGQMG 1377

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIE------KMEISAKIPLEKELNKIRPVVALAASTV 1496
             +YT+  LY QL YF  L D  +  E        E   K+    E N+ R         V
Sbjct: 1378 FEYTDKQLYNQLLYFARLWDVDKAKEAAAKETSTEKRDKVIAMVEWNRSR--FGTLKGVV 1435

Query: 1497 QRIRERCAYGWVKL 1510
                ++C   WV +
Sbjct: 1436 DAYLKKCGRQWVDM 1449



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  LKALR  G++      Y +K E  IYD + ED Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELKALRAAGKKR--LATYEVKDEGDIYDEIDEDGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLD-GQRSIKKQRIEKRGKKENNQN 130
           DD G GY D+G+EE        S SD + L    ++ K++R E + +KE   N
Sbjct: 58  DDTGEGYADDGREEWNDSKHYYSDSDGDELPLTGKAAKRKREEDQQRKEKINN 110


>gi|346319562|gb|EGX89163.1| DNA polymerase alpha catalytic subunit, putative [Cordyceps militaris
            CM01]
          Length = 1481

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 416/1237 (33%), Positives = 628/1237 (50%), Gaps = 156/1237 (12%)

Query: 319  GLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNM 376
            GL   +    ++ DGSL F+  D  E       G+L LFGKV  K    + SC V + N+
Sbjct: 346  GLGKMDHNDAIEADGSLNFFWTDYIEV-----NGSLCLFGKVLNKKSKEYVSCFVKIDNI 400

Query: 377  QRCVYAIPNGPLF----QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
             R +Y +P         QTDE +++                      + + TE+ + +  
Sbjct: 401  LRKLYFLPREQRLRDGDQTDESVEM----------------------MDVYTEVDDLMTK 438

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSA 492
            + V  Y +    R+YAF    +P    Y +K+ YP+ + P+  ++ GE F  + G++++ 
Sbjct: 439  MKVGMYKIKACTRKYAFELPGVPKEAQY-MKLLYPYTNQPIDPNVTGETFSHVFGSNTAL 497

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPV 552
             E F++ + V GP WL I   +   A +  S CK E+  + P  + V++ S ++ + PP+
Sbjct: 498  FEQFVLWKNVMGPCWLKIQD-ADFGAIKHASHCKLEVLAEHPNMLSVATDSDNL-DAPPL 555

Query: 553  TVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS--HFTVVRKLD 610
            T+ ++ L+T FN +++  EI++ S      A+I   +L S+      L    FTV+R   
Sbjct: 556  TMMSVALRTAFNSKENKQEILAIS------ARIYEKVLLSDTTPAEKLPCRTFTVIRPYA 609

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               FP+GF + A  R       ++  +  E  +L+  + ++   D DV++GH + G D  
Sbjct: 610  QN-FPLGFEQLAKARKR----GLIVMKKQESDILSFFLAQIDVADPDVILGHQLEGVDYS 664

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            VLL R Q  +  +  WS++GR +R++ P+   + G  +F           IAGRLLCD  
Sbjct: 665  VLLSRLQEKK--THGWSRLGRFRRTQWPQSLGKMGGNVFAE------RQIIAGRLLCDLA 716

Query: 729  --LCSRDLLREVSYSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDA 783
                   + +  ++SLT++    L+ D  R +V     L  + +  + LM+ I + E D 
Sbjct: 717  NEAGKSAMYKCQTWSLTEMCGLYLSGDNPRLDVDTETALNSWAKEKQGLMDYITHMEADT 776

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +    L   + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+
Sbjct: 777  YFIAALAISVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQTF 836

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                     R      D N EE                             LV EP+KGL
Sbjct: 837  ---------RGRQKASDENEEEAGQGKKKDKFKGG----------------LVFEPEKGL 871

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLV 959
            YDK++L++DFNSLYPSIIQE+NICFTTV+R+     +  VP +P  +  GVLP+L+  LV
Sbjct: 872  YDKFVLVMDFNSLYPSIIQEFNICFTTVDRTSLSTDEDAVPEVPKDQDQGVLPKLISTLV 931

Query: 960  QRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
             RRR VK+ MK  +A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +
Sbjct: 932  GRRRQVKSLMKDKSATAEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFK 991

Query: 1018 GREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEI 1077
            GREILRST +L ++  +L+VIYGDTDS+MI++ +D +A A  +  +  + VN++Y+ LEI
Sbjct: 992  GREILRSTKELAESK-SLQVIYGDTDSVMINANVDCVADAFKVGNEFKKAVNEQYRLLEI 1050

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            D+D +++R+LL  KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L +I
Sbjct: 1051 DIDNVFRRILLQAKKKYAAINLVEKDGKFIEQMEVKGLDMRRREYCALSKEISKHLLDEI 1110

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            LS    E  V  IH  L ++   MR   + + KY+I   L K P+ YP+A + P VQVAL
Sbjct: 1111 LSGADTEAAVSRIHEYLREIAAKMREQTIPVAKYIIFTQLGKDPKEYPNADSMPQVQVAL 1170

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSG-SSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
            R            GD + Y+I     T  G SS   A+RA  P +LK  D   + D+++Y
Sbjct: 1171 R--DIARKKNVRKGDVISYVI-----TGDGKSSEPPAKRAHAPGDLKT-DTTLIPDVEWY 1222

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGD 1313
              +QI P V RLCA+I GTS  +LA+ LGLD  ++ S  ++  S+        L   + D
Sbjct: 1223 LGKQIFPPVERLCANIVGTSTSQLAEQLGLDVRRYNSLQTQQNSASDDLEIHPLESQIPD 1282

Query: 1314 EERYRGCEPLILSCPSCSST--FDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPE 1371
            E R+  C  L L C  C S+  F+  AV      +                 + C  C  
Sbjct: 1283 EVRFADCARLSLRCRKCKSSTPFEGLAVAPDRVSASG---------------VVCGAC-- 1325

Query: 1372 EVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTV 1430
                  + P + I  QV+       S YY+G ++CDD  C   T  +++        GT 
Sbjct: 1326 ----HNVIPNISIVAQVEHAVRVQSSRYYEGWLVCDDSQCGNRTRQMSV-------YGTR 1374

Query: 1431 CPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLLDTQR---------GIEKMEISAKI 1476
            C   P+     C GR+  +YTE  +Y QL YF  L D +R         G    +   K+
Sbjct: 1375 CLG-PKGLARDCLGRMRYEYTEKAIYNQLVYFASLWDVERARARASAPDGPMPSQDREKV 1433

Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                E N++R         V    ++C   WV ++ +
Sbjct: 1434 LALAEHNRVR--FGTVKGVVDLYLDKCGRQWVAMDSL 1468



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 26 LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
          L  L ALR+ G+++ DS  Y ++  N +YD V ED Y  +V R R     F+VDD+G GY
Sbjct: 28 LAELTALRKAGKKAFDS--YKVEDVNALYDEVDEDGYKKIV-RDRLNEDDFVVDDNGEGY 84

Query: 86 GDEGQEEDW 94
           D+G+ EDW
Sbjct: 85 ADDGR-EDW 92


>gi|156379319|ref|XP_001631405.1| predicted protein [Nematostella vectensis]
 gi|156218445|gb|EDO39342.1| predicted protein [Nematostella vectensis]
          Length = 1242

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 419/1208 (34%), Positives = 607/1208 (50%), Gaps = 192/1208 (15%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            L FY  DA+E       G +YLFGKVK  S   + SCCV +KN+ R ++ +P        
Sbjct: 186  LQFYWFDAYED-RIKQPGVVYLFGKVKIESAGKYVSCCVTIKNIDRNIFILPREK----- 239

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               ++  D  ES  S + F+    DV      +IA++     +  ++   V++ YAF   
Sbjct: 240  ---RIGADGSESENS-VGFK----DVYEEFNEKIASKN---KIMKFVCRKVEKSYAFDIE 288

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
            +IP    Y L++ Y                                   V   +WLS+  
Sbjct: 289  DIPTSSEY-LEVRYSV---------------------------------VWSQTWLSLQW 314

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
            F +C       W   E                     P   +  +++KT+ N R    E+
Sbjct: 315  FPNC------LWFSME---------------------PDQVIHNLSMKTLMNSRTHTQEV 347

Query: 573  VSASVVCCHKAKIDTPMLASEWKK------PGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++ S +   +  +D      +++         M+ H  +         P     +     
Sbjct: 348  LAVSALVHQEVAVDKAAPKDKFQYRFCVLVSSMMMHLHIFFTDFWHCIPQHLKIDVM--- 404

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                       +SERALL  ++ +++K+D DVLVGH+I GFDLD+LLHR   C++P   W
Sbjct: 405  -----------ASERALLAFVVAKIHKIDPDVLVGHDIFGFDLDILLHRISACKIPQ--W 451

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S+IGRLKRS MPK+R      G    P + +C  GRLLCD  + SR+L+R  SY L++L+
Sbjct: 452  SRIGRLKRSIMPKVRLSLGRGGHNVDPTV-TC--GRLLCDVKISSRELIRSKSYDLSELS 508

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            +  L   R+E+   D+  M+ T + L+ L+E    D+ L++ +M+ L+VLPL  Q+T I+
Sbjct: 509  RVVLQTPRQELDQDDIGNMYNTSQELLHLLELTTVDSLLTLRIMYELNVLPLAHQITTIA 568

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GN+  +TL G R++R E+LLLHAF  K YI PDK +Y K+  + +               
Sbjct: 569  GNVLSRTLLGGRSKRNEFLLLHAFHEKGYICPDK-SYGKKQVVRE--------------- 612

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                   D+D      +KG+R PAYAGGLVLEPKKG YDK+ILLLDFNSLYPSIIQEYNI
Sbjct: 613  -------DDDDHVTTTKKGRRKPAYAGGLVLEPKKGFYDKFILLLDFNSLYPSIIQEYNI 665

Query: 927  CFTTVERSP-----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLKIQQ 979
            CFTT++R       D +V      +  G+LP  ++ LV+RRR VK  MKT S    K  Q
Sbjct: 666  CFTTIDRKSAKDEEDDIVDLPDMDQDPGILPTEIRKLVERRRQVKGMMKTVSRDSDKYLQ 725

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
             DI+Q+ALKLTANSMYGCLGFS+SRFYAKPLA L+T +GREIL  T DLVQ  ++L+VIY
Sbjct: 726  YDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMKTKDLVQ-QMHLDVIY 784

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            GDTDSIMI++   D+ + K +  KV +  +  Y  L +     +  +L +   +YAA+ +
Sbjct: 785  GDTDSIMINTNSTDLQEVKKVGNKV-RHPHATYLVLPVSYTLRFVNLLHILFSRYAAIMI 843

Query: 1100 -QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
             + +DG   EV E KGLD+VRRDW  L+K+ G++ LSQILS +S E +V+++H+ L+ + 
Sbjct: 844  SENEDGTMNEVKEMKGLDIVRRDWCDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITIG 903

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            ED++ G+V L+KYVI K LTK P  YPD K+ PHV VAL L       G   GDT+PY+I
Sbjct: 904  EDVKGGKVDLQKYVINKQLTKAPHDYPDKKSLPHVHVALWLMSKSRKVG--VGDTIPYVI 961

Query: 1219 CCEQG----TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP-VVSRLCASIE 1273
            C         + G+ V    R             W            H   +S +   I+
Sbjct: 962  CDVSMHLPLVTCGALVHYLLRYL-----------WRTCTLSLTLPVTHVYTISYISDPID 1010

Query: 1274 GTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSC--P 1328
            GT   R+A+CLGLDPS ++   + T   D + +LL     + DEER++ C  L+L C  P
Sbjct: 1011 GTDSARIAECLGLDPSGYRH--AATRHDDEADALLGGQAQMTDEERFKDCVRLVLKCKQP 1068

Query: 1329 SCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVK 1388
             C    D       +C   S +            +  CP C +       SP  + N + 
Sbjct: 1069 GC----DQQTTIEELCKDASARTP--------LLSALCPGCEK-----LYSPATVINHLT 1111

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGT-VCPNYPRCNGRLVRKYTE 1447
                  +  YY G   C+D +C + T  + L       RGT  CPN  R +  ++  Y++
Sbjct: 1112 VIIRKHIKEYYAGWQRCEDPSCDHRTRQVPLM----HHRGTPTCPNCHRAH--MLPVYSD 1165

Query: 1448 ADLYKQLTYFCHLLDTQRGIEKMEISAKIPL-----EKELNKIRPVVALAASTVQRIRER 1502
              LY QL ++  L D  R ++ ++ +           KE   ++       + +QRI E 
Sbjct: 1166 TALYNQLLFYGRLFDADRALKTLKDNGGKDFLLKSYLKENKIVKSFYTDVHTALQRIIEA 1225

Query: 1503 CAYGWVKL 1510
             AY  V L
Sbjct: 1226 NAYSEVDL 1233


>gi|195445744|ref|XP_002070466.1| GK12074 [Drosophila willistoni]
 gi|194166551|gb|EDW81452.1| GK12074 [Drosophila willistoni]
          Length = 1468

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 412/1173 (35%), Positives = 617/1173 (52%), Gaps = 114/1173 (9%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLF 389
            +D+  L F+  +A E       G ++LFG++  G    S CV V+N+ R +Y +P   L 
Sbjct: 335  NDEEQLRFWYWEAWEDPLKLP-GEVFLFGRMADGK---SICVRVQNINRVLYLLPRQYLL 390

Query: 390  QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF 449
              D I K           P      + D+     T+IA +L   N  +  VS     +A 
Sbjct: 391  --DPITK----------EPTKQMVTVADIYKEFDTQIAAELKLDNFRSRKVSKNFANHAI 438

Query: 450  GQAEIPAGENYVLKINYPFKDP-PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            G  ++P   +Y L+++Y  K P P  A+ K ++   + GT +++LE FL+ RK+KGP WL
Sbjct: 439  G-IDVPQTCDY-LEVHYDGKKPAPNVANKKYDSIAHVFGTTTNSLERFLLDRKIKGPGWL 496

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRV-SSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
             IS F + PAP  +SWCK ++T+  PK++ +     K  A  PP+T+ A+N++T  N + 
Sbjct: 497  QISGFKTSPAP--MSWCKTDVTIIEPKNVELFHEKGKAAAAPPPLTLLALNVRTSMNPKT 554

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              NEI   S++  ++  ID P       +P    H   + +     +P     +      
Sbjct: 555  LKNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPAVTNWPFDLQLQL----G 605

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K  S  +    SERALL+  + +  ++D D++V  +     L+V+  +    ++P   WS
Sbjct: 606  KYKSTKIYKHDSERALLSWFLAQYQQIDPDLIVTFDAMDCQLNVITDQIVALKIPQ--WS 663

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            ++GRL+ ++      GR +F             GR++CD    + + +R  SY +  L +
Sbjct: 664  RMGRLRLTQ----SFGRRLFDH---------FVGRMVCDVKRSAEECIRARSYDMQTLCQ 710

Query: 748  TQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
              L     +R +V   D+L+M++  E++ +LI     DA   + LM  L+++PL  Q+TN
Sbjct: 711  QVLKLQESERMDVNADDLLEMYEKGENITKLISLTMQDASYMLRLMCELNIMPLALQITN 770

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            I GN   +TLQG R++R E+LLLHAF  K YIVPDK           +    G     + 
Sbjct: 771  ICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK-----------RPVRRGGAANAIA 819

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            +     A  D  T+      G++  AYAGGLVLEP +GLY+K+ILL+DFNSLYPSIIQEY
Sbjct: 820  DNDATTAPGDATTA------GRKKAAYAGGLVLEPMRGLYEKFILLMDFNSLYPSIIQEY 873

Query: 925  NICFTTVERSPDG-LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKT---ASGLKIQQ 979
            NICFTTV++  D   +P LP S    G+LP  LK LV+ RR VK  M     +S L +Q 
Sbjct: 874  NICFTTVQQPVDADELPILPESNAEPGILPLQLKRLVESRREVKKLMAAPDLSSELHMQ- 932

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
              I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL +T  LVQ  LN +V+Y
Sbjct: 933  YHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQK-LNYDVVY 991

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK-RMLLLKKKKYAAVK 1098
            GDTDS+MI++ I D  +   I  ++ Q VNK YK LE+D+DG++   +LL KKK  A   
Sbjct: 992  GDTDSLMINTNITDYDQVYKIGYQIKQSVNKLYKQLELDIDGVFSCLLLLKKKKYAAVKV 1051

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
             +   G+     E KGLD+VRRDWS L+  +G   L +IL+E+  E+ ++++H+ L +++
Sbjct: 1052 SKTPKGVLKREQEHKGLDIVRRDWSQLAIMLGKGVLDEILAEKPLEEKIDAVHHQLERIK 1111

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            + +    V L  YVITK LT+ P+ Y ++ + PHVQVALR+ +   +     GD V Y+I
Sbjct: 1112 DQVLQSAVPLPLYVITKQLTRAPQEYANSASLPHVQVALRMNREK-NRRYKKGDMVDYVI 1170

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            C +     GS+    QRA H DELK  +    +D +YY   QIHPVV+R+   +EGT   
Sbjct: 1171 CVD-----GSTNAAMQRAYHLDELKTNEN-LKLDTNYYLGNQIHPVVTRMVEVLEGTDAS 1224

Query: 1279 RLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTF 1334
            R+A+CLGLD +KF    Q    E        SLL      +R+R CEP    C +C    
Sbjct: 1225 RIAECLGLDATKFRQNVQRVQREMTEQSEGESLLKTTL--QRFRLCEPFRFPCVACK--- 1279

Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWR---TLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
                  +   M+ + +P    T     +      C   P +  A       I N ++   
Sbjct: 1280 ------TEQLMATAYRPGPNSTHVPVLQHCSNTECSTAPLQYLA------YIRNHLQLSI 1327

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
              +   +YK  ++CD   C Y T +   +      R  +C  Y   +G L+R+YTE DLY
Sbjct: 1328 KTYTQRFYKNWLVCDHPDCNYNTRTFTAK---KEMRRPLC--YKCKSGSLLRQYTEQDLY 1382

Query: 1452 KQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            +QL Y   + D    + K ++  K  L  EL +
Sbjct: 1383 QQLCYLRFMFD----LNKQQVQQKSTLTPELEQ 1411


>gi|322709417|gb|EFZ00993.1| DNA polymerase alpha catalytic subunit, putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1464

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 415/1222 (33%), Positives = 619/1222 (50%), Gaps = 145/1222 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            ++ DGSL F+  D  E       G+L LFGKV  K   ++ SC V + N+ R +Y +P  
Sbjct: 338  IEADGSLNFFWTDYTEI-----NGSLCLFGKVLNKKTKSYVSCFVKIDNILRKLYFLPRQ 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +       + D+ E  +   +  +++ ++   LK ++           Y +    R+
Sbjct: 393  QRVR-------DGDSIEETVEMASVYEEIDEIMTKLKVDM-----------YKIKACTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y +K+ YP+  P + A   GE +  + G +++  E F++ + + GP 
Sbjct: 435  YAFELPNVPKEAQY-MKLFYPYTRPQIDA-AAGETYSHVFGANTALFEQFVLWKNIMGPC 492

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +   A    S CK E+  + P  +   S S ++ + PP+T+ ++ ++T FN +
Sbjct: 493  WLKIQD-ADFGAIHNASHCKLEVLAEHPNMVSTMSESDNL-DAPPLTLMSVAIRTAFNAK 550

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            ++  EI++ S     K  +     A   K P     FTV+R   G  FP GF++    RN
Sbjct: 551  ENKQEILAISARVYDKVSLSDTTPAE--KLP--CRTFTVIRP-HGPSFPFGFDQLVQKRN 605

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  +L  +  E  +L+  + ++   D DV++GH   G D  VLL R +  ++    W
Sbjct: 606  R----GLLVLKKQEVDILSFFLAQVDVADPDVILGHQFEGVDYSVLLSRLREKKI--HQW 659

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY---- 740
            S++GRL+R E P    + G  +F           IAGRLLCD    + D  +   Y    
Sbjct: 660  SRLGRLRRREWPASIGKVGGNVFAE------RQVIAGRLLCD---LANDAGKSAMYKCQN 710

Query: 741  -SLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVL 796
             SLT++    L+ D  R++V     L  + +  + LM+ I + E D      L   + +L
Sbjct: 711  WSLTEMCSLYLSGDNRRRDVDNEAALSSWAKEKQGLMDYITHMEADTHFIAALALSVQLL 770

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK ++         R   
Sbjct: 771  PLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQSF---------RGRQ 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              ED N EE T E    D                    LV EP+KGLYDK++L++DFNSL
Sbjct: 822  KREDENQEEATGEGKKKDKYKGG---------------LVFEPEKGLYDKFVLVMDFNSL 866

Query: 917  YPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-- 970
            YPSIIQE+NICFTTV+R+     +  VP +P+ +  G+LP L+  LV RRR VK  MK  
Sbjct: 867  YPSIIQEFNICFTTVDRTALADDEDAVPEVPADQDQGILPRLIATLVGRRRQVKALMKDK 926

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 927  NATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAE 986

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +  +L+VIYGDTDS+MI++ +D +A A  +  +  + VN +YK LEID+D +++R+LL  
Sbjct: 987  SK-SLQVIYGDTDSVMINANVDSVADAFRVGNEFKRAVNDQYKLLEIDIDNVFRRILLQA 1045

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L +ILS    E  +  I
Sbjct: 1046 KKKYAAINLIEKDGKFVEKMEVKGLDMRRREYCALSKEISKHLLDEILSGDEAEVAITRI 1105

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H  L  +   MR   + + KY+I   L K P  YP+A + P VQVALR    G +     
Sbjct: 1106 HEYLRDIAGKMREQSIPVAKYIIYTQLGKGPTEYPNADSMPQVQVALRDIARGKT--IRK 1163

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V YII  + GTSS  +    +RA  P +L K D   + D+++Y  +QI P V RLCA
Sbjct: 1164 GDVVSYIITGD-GTSSEPA---PKRAYAPADL-KSDSTLVPDVEWYLGKQIFPPVERLCA 1218

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEPLILSC 1327
            +I GTS  +LA+ LGLD  ++ S  ++  SS+       L   + DE R+  C  L L C
Sbjct: 1219 NIVGTSTSQLAEQLGLDIRRYSSNQTQQNSSNDDLEIHPLESQIPDEVRFGDCARLSLRC 1278

Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQ 1386
              C ++     +  S        P +          + C  C      G + P + +  Q
Sbjct: 1279 RKCKASTKFEGLVVS--------PDRVSAS-----GVLCGGC------GAVIPTLSVVAQ 1319

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRL 1441
            V+       S YY+G ++CDD  C   T  +++        GT C   P+     C GR+
Sbjct: 1320 VEHAVRSQTSRYYEGWLVCDDSQCGNRTRQMSV-------YGTRCLG-PKGLARDCLGRM 1371

Query: 1442 VRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEK----------ELNKIRPVVAL 1491
              +YTE  +Y QL YF  L D  +   K   +    L +          E N++R     
Sbjct: 1372 RYEYTEKAIYNQLVYFSSLWDVDKARSKATDTNNSTLSRQGRDTILALAEHNRVR--FGT 1429

Query: 1492 AASTVQRIRERCAYGWVKLNDI 1513
                V +  ++C   WV ++ +
Sbjct: 1430 VKGVVDKYLDKCGRQWVAMDTL 1451


>gi|154271065|ref|XP_001536386.1| hypothetical protein HCAG_08707 [Ajellomyces capsulatus NAm1]
 gi|150409609|gb|EDN05053.1| hypothetical protein HCAG_08707 [Ajellomyces capsulatus NAm1]
          Length = 1458

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 420/1214 (34%), Positives = 615/1214 (50%), Gaps = 134/1214 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST--HHSCCVVVKNMQRCVYAIPNG 386
            ++++GSL F+ LD  E       G+L LFGKVK   T  + S    + N+ R +Y +P  
Sbjct: 338  IEENGSLLFFWLDYVEV-----NGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRK 392

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +     + E D E+                  +  E+ + +       +      R+
Sbjct: 393  YRVRHGRETEEEIDMED------------------VYNEVDDLMSRTKAGTHKSKVSTRK 434

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF  A++P    Y LK+ Y +  P L  D+KGE F  + GT+++  E F++ + + GP 
Sbjct: 435  YAFELADVPKEGEY-LKVMYSYDKPALAFDVKGETFSRVFGTNTALFEQFVLWKNIMGPC 493

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL +   +   A    SWCK E  V  PK I V+ +S  + E+P +T+ ++  +T  N +
Sbjct: 494  WLKLED-ADFTAVNGASWCKLECQVSEPKLITVAPNSDSL-EIPRLTLMSLAFRTQLNVK 551

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--SHFTVVRKLDGGIFPMGFNKEATD 624
             +  EI+ AS      A++   +L ++      L    FTV+R   G  +P+GF  E   
Sbjct: 552  DNKQEILVAS------ARVYENVLLTDTTPAEKLPCKTFTVMRP-SGHNYPIGFEAE--- 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              ++     L  E SE+ LL++ M    K+D DVL+GH +   D ++ L R    + P  
Sbjct: 602  --TRKHRGTLMMEKSEQFLLSKFMALFEKMDPDVLMGHQLQEVDFNIFLSRLSEKKTPG- 658

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYS 741
             W +IGRLKRSE PK L +G + F           +AGRLLCD    +    +L+  S+S
Sbjct: 659  -WHRIGRLKRSEWPKSLSRGTSFFAE------RKLVAGRLLCDIANEMGKSLMLKCQSWS 711

Query: 742  LTQLAKTQLNKD--RKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPL 798
            LT++ +  L     R+++     LK + T  E LM    + E D +    L+  L +LPL
Sbjct: 712  LTEMCQLYLGDGNLRRDIDNEAALKSWATSKEGLMNYTNHCEADTYFIAALVLRLQMLPL 771

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            T+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK+   K+ +M++       
Sbjct: 772  TKVLTNLAGNSWARTLSGTRAERNEYILLHEFYRNKYICPDKYA-GKQQQMSQ------- 823

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                    TNE+          D    K+   Y GGLV EP+KGLYDKYIL++DFNSLYP
Sbjct: 824  --------TNEE--------DEDGTDKKKKDKYKGGLVFEPEKGLYDKYILVMDFNSLYP 867

Query: 919  SIIQEYNICFTTVERSP------DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT- 971
            SIIQE+NICFTTV+R+          VP +P +++ G+LP L+  LV RRR VK  MK  
Sbjct: 868  SIIQEFNICFTTVDRTSVVENENQENVPEVPKAQSMGILPRLIATLVNRRREVKKLMKDK 927

Query: 972  -ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             AS   +   D +Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 928  RASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAE 987

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N  L+VIYGDTDS+MI++  D++  A  +     + VN++Y+ LEID+D +++R+LL  
Sbjct: 988  SN-QLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRLLLHA 1046

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +   DG   E +E KGLDM RR++  LSKEV    L +ILS    + V+  +
Sbjct: 1047 KKKYAAINMTEVDGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDSDVVLTKV 1106

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L  + + ++   + L+KYVI   L+K P  YP+ +  P  QVALR    G +     
Sbjct: 1107 HDYLRDITKKIKEYSIPLQKYVIYMKLSKRPNEYPNKETMPAAQVALRELARGKTV--RP 1164

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
             D + YI+    G S  SS+  A+R+    ++ K D     D++YY  +QI P + RLC 
Sbjct: 1165 NDVIAYIVTT--GDSDTSSLAPAKRSYTLQDVMKPDSGLKPDVEYYLLKQIFPPIERLCG 1222

Query: 1271 SIEGTSPERLADCLGLDPSKFQ-----SKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
             I GT   RLA+CLGLD  K+Q     S+  + M   P  S    + D  R++    L L
Sbjct: 1223 PIPGTDAVRLAECLGLDVKKYQINTSSSRDQQNMEIFPLES---QIPDSIRFKDAVRLTL 1279

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
             C  C        +C S  M                 T     CP        S   +  
Sbjct: 1280 RCRFCHERTCFEGLCLSTEMC----------------TANGLICPNSTCGKPFSVISVVA 1323

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLV 1442
            Q++ Q     S YY+G ++CDD +C   T  +++   R +G   R         C G++ 
Sbjct: 1324 QLETQIRAQTSKYYEGWLVCDDPSCGNRTRQMSVYGRRCLGPRGRAE------GCLGQMG 1377

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIE------KMEISAKIPLEKELNKIRPVVALAASTV 1496
             +YT+  LY QL YF  L D  +  E        E   K+    E N+ R         V
Sbjct: 1378 FEYTDKQLYNQLLYFARLWDVDKAKEAAQKETNTEKRDKVIAMVEWNRSR--FGTLKGVV 1435

Query: 1497 QRIRERCAYGWVKL 1510
                ++C   WV +
Sbjct: 1436 DAYLKKCGRQWVDM 1449



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 19  ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
           A+ARA+ L  LKALR  G++      Y +K E  IYD + ED Y  LV R+R +   F++
Sbjct: 2   AAARAK-LAELKALRAAGKKR--LATYEVKDEGNIYDEIDEDGYKKLV-RKRLDQDDFVI 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLD-GQRSIKKQRIEKRGKKENNQN 130
           DD G GY D+G+EE        S SD + L    ++ K++R E + +KE   N
Sbjct: 58  DDTGEGYADDGREEWNDSKHYYSDSDGDELPLTGKAAKRKREEDQQRKEKINN 110


>gi|302904102|ref|XP_003049003.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729937|gb|EEU43290.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1473

 Score =  597 bits (1540), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 414/1239 (33%), Positives = 627/1239 (50%), Gaps = 165/1239 (13%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            V++DGSL F+  D  E       G+L LFGKV  K   ++ SC V V N+ R +Y +P  
Sbjct: 336  VEEDGSLNFFWTDYMEI-----NGSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLP-- 388

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
                            + R+       +  ++   +  E+   +  + V  Y +    R+
Sbjct: 389  ---------------RQHRVQGGEETGEEVEMT-NVYDEVDEIMTRMKVGMYKIKACTRK 432

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF    +P    Y +K+ YP+  PP+     GE +  + G++++  E F++ + + GP 
Sbjct: 433  YAFELPGVPKEAQY-MKLLYPYNKPPVDP-TPGETYSHVFGSNTALFEQFVLWKNIMGPC 490

Query: 507  WLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            WL I    F S    +  S CK E+  + P  I V S S ++ +VPP+T+ +++L+T FN
Sbjct: 491  WLKIEDGDFGSI---KNGSHCKLEVLAEHPNMISVLSDSDNL-DVPPLTLMSVSLRTAFN 546

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
             + +  EI++ S     K  +     A   K P     FTV+R    G FP+GF++ A  
Sbjct: 547  SKDNKQEILAISARIYEKVSLSDTTPAE--KLP--CRTFTVIRPHGQG-FPLGFDQLARK 601

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            RN      ++  +  E  +L+  + ++   D DV++GH + G D  VLL+R    ++   
Sbjct: 602  RNR----GLIVLKKQEADILSFFLAQIDVADPDVILGHQLEGVDYSVLLNRLHEKKI--H 655

Query: 685  MWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---- 738
             WS++GR +R++ P    + G  +F           +AGRLLCD    + D  + V    
Sbjct: 656  QWSRLGRFRRTQWPPSIGKTGGNVFAE------RQILAGRLLCD---LANDAGKSVMFKC 706

Query: 739  -SYSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLS 794
             S+SLT++    L+ D  R+E      L  + +  + L++ I + E D      L   + 
Sbjct: 707  QSWSLTEMCSLYLSGDNRRREFDNETALSTWAKEKQGLLDYITHMEADTHYIAALAISVQ 766

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+    +  +++ 
Sbjct: 767  MLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQTFRGRQRAEEEQQ 826

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                 D                         K+   Y GGLV EP+KGLYDK++L++DFN
Sbjct: 827  QEEAGDT------------------------KKKDKYKGGLVFEPEKGLYDKFVLVMDFN 862

Query: 915  SLYPSIIQEYNICFTTVERSP---------------------DGLVPHLPSSKTTGVLPE 953
            SLYPSIIQE+NICFTTV+R+                      +  VP +P+++  G+LP 
Sbjct: 863  SLYPSIIQEFNICFTTVDRTASVSRHWFFFRIMFLTPMQTEDEDAVPDVPTNQDQGILPR 922

Query: 954  LLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            L+  LV RRR VK+ MK   A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA
Sbjct: 923  LIATLVSRRRQVKSLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLA 982

Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
             L T +GREILRST +L ++  +L+VIYGDTDS+MI++ +D++A A  +     + VN +
Sbjct: 983  VLTTFKGREILRSTKELAESK-SLQVIYGDTDSVMINANVDNVADAFKVGNDFKKAVNDQ 1041

Query: 1072 YKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
            YK LEID+D +++R+LL  KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+  
Sbjct: 1042 YKLLEIDIDNVFRRILLQAKKKYAAINLVEKDGKFIEKMEVKGLDMKRREYCALSKEISK 1101

Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
              L +ILS    E  +  IH  L  +   MR   + + KY+I   L K P+ YP+A + P
Sbjct: 1102 HLLDEILSGDDTEVSIARIHEYLRDIAGKMREQTIPVPKYIIYTQLGKAPKEYPNADSMP 1161

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI 1251
             VQVALR    G +     GD + YII  +  +S  +     +RA  P +L K D   + 
Sbjct: 1162 QVQVALRELAKGKTV--RKGDVISYIITGDGKSSEPA----PKRAYAPGDL-KADPTLLP 1214

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP---SKFQSKPSETMSSDPSSSLL 1308
            D+++Y  +QI P V RLCA+I GTS  +LA+ LGLD    S FQ++ + + +      L 
Sbjct: 1215 DVEWYIGKQIFPPVERLCANIVGTSTSQLAEQLGLDIKRYSSFQTQQNSSSNDLEIHPLD 1274

Query: 1309 FAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
              + DE R+  C  L L C  C  SSTF+  A       +                 + C
Sbjct: 1275 SQIPDEVRFGDCARLSLRCRKCKASSTFEGLAASPDRVTASG---------------VVC 1319

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
              C        IS   I  Q++       S YY+G ++CDD  C   T  +++       
Sbjct: 1320 GSC-----GATISTLSIVAQLEHAIRTQTSRYYEGWLVCDDTQCGNRTRQMSV------- 1367

Query: 1427 RGTVCPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEIS-------A 1474
             GT C   P+     C GR+  +YTE  +Y QL YF  + D  +   K +++        
Sbjct: 1368 YGTRCLG-PKGLARDCLGRMRYEYTEKAIYTQLLYFASVWDVDKAKAKAQVAEMSRQDRE 1426

Query: 1475 KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             I  + E N++R         V +  E+C   WV ++ +
Sbjct: 1427 NILAQAEHNRVR--FGTVKGVVDKYLEKCGRQWVAMDTL 1463



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 6/106 (5%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  LKALR+ G+++ D+  Y +K  + +YD V E  Y  +V R R     F+VDD+G GY
Sbjct: 7   LAELKALRQSGKKAFDN--YKVKDVDNLYDEVDEAGYKKIV-RDRLNEDDFVVDDNGEGY 63

Query: 86  GDEGQEEDWSVAGLPSSSDDESLDGQR---SIKKQRIEKRGKKENN 128
            D+G+EE   V    S S++E++   R   + KK R +++ K++ N
Sbjct: 64  ADDGREEWDRVQAYDSDSEEEAVVRGRPSKAAKKNRQQEQAKRDAN 109


>gi|346972036|gb|EGY15488.1| DNA polymerase alpha catalytic subunit [Verticillium dahliae VdLs.17]
          Length = 1474

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 418/1230 (33%), Positives = 630/1230 (51%), Gaps = 157/1230 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP-- 384
            +++DGSL  +  D  E       G+L LFGKV  K    H SC V + N+ R ++ +P  
Sbjct: 343  IEEDGSLNMFWTDYTEV-----SGSLCLFGKVLNKKTGQHVSCFVKIDNILRKLFFLPRE 397

Query: 385  ---NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVS 441
                G +   DE+  ++                       +  E+   +  L +  +   
Sbjct: 398  TRVQGGIDTCDEVGMVD-----------------------VYNEVDALMTKLKIGKHKTK 434

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
              KR+YAF   +IP    Y LK  YP+    + A   GE F  + GT+++  E F++ + 
Sbjct: 435  ACKRKYAFELPDIPKEGQY-LKCMYPYSMASVDARETGETFSHVFGTNTALFEQFVLWKN 493

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + GP WL+I  + FSS    Q  S CK E+ V+ P  +     S+++ E PP+T+ ++ +
Sbjct: 494  IMGPCWLNIKDADFSSL---QNASHCKLEVLVEHPNMVAPLRDSENL-ETPPLTLMSLAM 549

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T FN + +  EI++ S     K  +     A   K P     FT+VR  +G  FP GF 
Sbjct: 550  RTTFNAKDNKLEILALSARVYEKVSLSDTTPAE--KLP--CRTFTLVRP-NGSAFPGGFE 604

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
            K A DR+SK    ++     E  +L   + +L  +D DV++GH + G D  VLL+R    
Sbjct: 605  KLAKDRSSKG---LIKTFKQESEILMFFLAQLDIVDPDVILGHQLEGVDYSVLLNRIHEK 661

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLRE 737
            + P   WS++GRL+R+  P    G+T     A   +MS   GRLLCD         + + 
Sbjct: 662  KTPQ--WSRLGRLRRTLWPS-SIGKTGGNVFAERQVMS---GRLLCDLANDAGKSAMYKC 715

Query: 738  VSYSLTQLAKTQL--NKDRKEVGPHDVLKMF--QTLESLMELIEYGETDAWLSMELMFHL 793
             S+SLT++    L  N  R+E+     LK +   + E  M+ + + E D +    L   +
Sbjct: 716  QSWSLTEMCSLYLSGNNHRRELDNDAALKTWASHSKEGFMDYVTHIEADTYFIAALALQV 775

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK  +        QR
Sbjct: 776  QLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQGF--------QR 827

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                 ED             + D+   D         + GGLV +P+KGLYDK++L++DF
Sbjct: 828  GKGAKEDE------------EGDSKKKDK--------FKGGLVFDPEKGLYDKFVLVMDF 867

Query: 914  NSLYPSIIQEYNICFTTVERSPD----GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            NSLYPSIIQE+NICFTTV+R+        VP +P  +  G+LP+L+  LV RRR VK+ M
Sbjct: 868  NSLYPSIIQEFNICFTTVDRTATLEDEEEVPEVPVDQEQGILPKLIATLVSRRRQVKSLM 927

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K  TA+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +
Sbjct: 928  KDKTATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKE 987

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            L ++   L+VIYGDTDS+MI++ ++++A A  +  +  + VN++Y+ LEID+D +++R+L
Sbjct: 988  LAESRA-LQVIYGDTDSVMINANVENVADAFKVGAEFKKAVNERYRLLEIDIDNVFRRIL 1046

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L  KKKYAA+ +   +G   E +E KGLDM RR++  LSKE+    L +ILS    E  +
Sbjct: 1047 LQAKKKYAAINLVENNGKYIEKMEVKGLDMKRREYCGLSKEISGKLLDEILSGEDTEVSI 1106

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
              IH+ L ++   MR   +  +KY+I   L K P+ YP+    P VQVALR    G    
Sbjct: 1107 SRIHDYLREIAAKMREQSIPAQKYIIFTQLGKGPKEYPNGDTMPQVQVALRDIARG--KN 1164

Query: 1208 CSAGDTVPYIICCEQGTSSG-SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
               GD + YII     T  G SS    +RA  P ++ K +     D+++Y ++QI P V 
Sbjct: 1165 VRKGDVISYII-----TGDGQSSEPAPKRAYTPSDVLKPESGLAPDVEWYIAKQIFPPVE 1219

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSKP------SETMSSDPSSSLLFAVGDEERYRGC 1320
            RLCA+I GTS  +LA+CLGLD  ++ +         + M   P  S    + D+ R+  C
Sbjct: 1220 RLCANIVGTSTMQLAECLGLDIKRYDTSRRHDDGVEKDMEVHPLES---QIPDDVRFADC 1276

Query: 1321 EPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP 1380
              L L C +C          SS+   +  +P++          + C  C        I+P
Sbjct: 1277 TRLSLRCRTCKK--------SSVFEGLYSQPTRVSPA-----GVLCDHC-----GATINP 1318

Query: 1381 GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR---- 1436
              +  QV+       + YY+G ++CDD +C   T  +N+        GT C   P+    
Sbjct: 1319 LSVVAQVEHAIRVQTARYYEGWLVCDDSSCGIRTRQMNV-------YGTRCLG-PKGLAR 1370

Query: 1437 -CNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAAST 1495
             C GR+  +Y+E  +Y QL YF  L D  +  +K   +A    E+ L++      LA + 
Sbjct: 1371 DCLGRMRYEYSEKAIYNQLVYFTSLWDVDKARDKAVAAAAPGSEEALSQADRENILALAE 1430

Query: 1496 VQRIR------------ERCAYGWVKLNDI 1513
              R+R            ++C   WV ++ +
Sbjct: 1431 HNRVRFGTVKGVVEKYLDKCGRQWVAMDTL 1460



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 30/192 (15%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  LKALR+ G+++ D+  Y +   N +Y+ V E +Y  +V R R     F+VDD+
Sbjct: 6   RRAKLAELKALRQAGKKAFDN--YQVDDINELYEEVDETQYKKIV-RDRLNEDDFVVDDN 62

Query: 82  GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAA 141
           G GY D+G+EE   V     +SD E  DG  S  + R  K  KK+   +         AA
Sbjct: 63  GEGYADDGREEWDRVQQYHYASDSEE-DG--SGARGRPTKASKKKQADD---------AA 110

Query: 142 AAMMGKQRLSAMLTSTA--MFKKSKDEKVKESESVIDEVLAEF-----AP--------DE 186
                 + +S   TS A     K K  K KE +  + ++L E      AP          
Sbjct: 111 RREANDRDISTYFTSGAGKTQAKPKVAKTKEDDDFLADLLGEVDTNVPAPVPRSTKRHRS 170

Query: 187 ADRERRRRSVSS 198
            DR++RR  V+S
Sbjct: 171 PDRQQRRVRVAS 182


>gi|195055235|ref|XP_001994525.1| GH17298 [Drosophila grimshawi]
 gi|193892288|gb|EDV91154.1| GH17298 [Drosophila grimshawi]
          Length = 1481

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 405/1174 (34%), Positives = 626/1174 (53%), Gaps = 100/1174 (8%)

Query: 352  GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            G ++LFG+   G    S CV V+N+ R +Y +P   L        + K+  + +++    
Sbjct: 367  GEVFLFGRTPDGK---SICVRVQNINRVLYLLPRQYLLDP-----ITKEHTKQKVTAADM 418

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
             K+         T IA +L      +  VS     +A G  ++P   +Y L+++Y  K P
Sbjct: 419  YKEFD-------THIATELKLETFRSRKVSKSFANHAIG-IDVPQTCDY-LEVHYDGKKP 469

Query: 472  -PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEIT 530
             P   + K ++   + G  ++ALE FL++RK+KGP WL IS F+  PA   +SWCK ++T
Sbjct: 470  APNMLNKKYDSIAHIFGASTNALERFLLERKIKGPCWLQISGFNVNPAA--ISWCKTDVT 527

Query: 531  VDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
            +  PK++ V          P +T+  +N++T  N +   NEI   S++  ++  ID P  
Sbjct: 528  IAEPKNVEVLQEQGKPTPPPAITLLTLNVRTSMNPKTLRNEICMISMLTHNRFHIDKPA- 586

Query: 591  ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
                 +P    H   + +     +P   N +     +K  S  +    SERALL+  + +
Sbjct: 587  ----PQPAFNRHMCALTRPAVSSWPFDLNLQL----AKYKSTKIYKHDSERALLSWFLAQ 638

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
              ++D+D++V  +     L+V+  +    ++P   WS++GRL+ ++          FG  
Sbjct: 639  YQQIDADLIVTFDAMDCQLNVITDQIVALKIPQ--WSRMGRLRFTQ---------TFGKR 687

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQ 767
                ++    GR++CD    + + +R  SY L  L +  L     +R +V   D+L+M++
Sbjct: 688  ----LLDHFVGRMVCDVKRSAEECIRARSYDLQSLCQQVLKLQESERMDVNADDLLEMYE 743

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              +++ +LI     DA   + LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLL
Sbjct: 744  KGDNITKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLL 803

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
            HAF  K YI PDK           QR    V+    E   N     D   +       ++
Sbjct: 804  HAFHEKNYIAPDK---------QPQRRGAAVK---AEADPNATTGNDTTVATTGAGAARK 851

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLP-SS 945
              AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SS
Sbjct: 852  KAAYAGGLVLEPLRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPHDADQLPVLPDSS 911

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
               G+LP+ L+ LV+ RR VK  M     S     Q  I+Q ALKLTANSMYGCLGF++S
Sbjct: 912  AEPGILPQQLRRLVESRREVKKLMAVPDLSPELHMQYHIRQMALKLTANSMYGCLGFAHS 971

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            RF+A+ LA L+T +GREIL +T  LVQ  LN +V+YGDTDS+MI++ I D  +   I   
Sbjct: 972  RFFAQHLAALVTHKGREILVNTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYRIGHA 1030

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDW 1122
            + Q VNK YK LE+D+DG++  +LLLKKKKYAAVK+ +   G+     E KGLD+VRRDW
Sbjct: 1031 IKQSVNKLYKQLELDIDGVFACLLLLKKKKYAAVKLSKNAKGVLRREHEYKGLDIVRRDW 1090

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
            S ++  VG   L ++L+E+  ED ++++H  L ++++ +    V L  YVITK LT+ P+
Sbjct: 1091 SQVAIMVGKAVLDEVLAEKPLEDKLDAVHAQLGRIKDQIEQSAVPLPLYVITKQLTRAPQ 1150

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y ++ + PHVQVA+R+ +  ++     GD V Y+IC +     G++    QRA H DEL
Sbjct: 1151 EYANSASLPHVQVAMRMNRE-HNRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDEL 1204

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM--S 1300
             KG     +D +YY S QIHPVV+R+   +EGT   R+A+CLG+D SKF+          
Sbjct: 1205 -KGSETLKLDTNYYLSNQIHPVVTRMVEVLEGTDASRIAECLGMDASKFRQNAQRIQRER 1263

Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNF 1360
            ++ +          + YR CEP   +C +C          +   M+ + +P    +    
Sbjct: 1264 TEEAEGESLQKTTLQLYRLCEPFRFNCVACK---------TEQLMASAYRPGPNSSHVPV 1314

Query: 1361 WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR 1420
             +     +C        +S   I NQ++ +  G+V  +Y+  ++CD   C Y T S ++R
Sbjct: 1315 LQQCVNAECQTSPLQYLVS---IRNQLQLRIRGYVQRFYRNWLVCDHPDCNYNTRSYSIR 1371

Query: 1421 LIGDAERGTVCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLE 1479
            L     R  +C    +C +G ++R+Y+E DLY QL Y   + D    + K +++ K  L 
Sbjct: 1372 L---ELRRPLC---LKCSSGAMLRQYSERDLYNQLCYLRFMFD----LNKQQLTQKPTLT 1421

Query: 1480 KELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
             EL +      L   TV++  +   Y  + L +I
Sbjct: 1422 PELEQ---AYQLLLDTVEQQFQSSGYVVISLGNI 1452


>gi|170060133|ref|XP_001865668.1| DNA polymerase alpha catalytic subunit [Culex quinquefasciatus]
 gi|167878675|gb|EDS42058.1| DNA polymerase alpha catalytic subunit [Culex quinquefasciatus]
          Length = 1495

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 431/1245 (34%), Positives = 634/1245 (50%), Gaps = 137/1245 (11%)

Query: 291  TEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGAN 350
            T+ + LLS   GW  +      L+E     +  ++    +   ++ F+  DA    +   
Sbjct: 312  TDSEKLLS---GWDNICLAE--LEEEMPVPDAMDTSISEESTETMRFWFWDAWTDPAKCQ 366

Query: 351  MGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISP 408
             G +Y+FGKV  K      S CV V N+ RC+  +P      +DE + +     E R   
Sbjct: 367  -GEIYIFGKVATKKPGEFQSVCVHVLNVDRCMQLLPREKELDSDEPVTMLSVYNEFR--- 422

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF----GQAEIPAGENYVLKI 464
                    D++  LK           V+NY    V++ +A+     + E+PA  +Y L++
Sbjct: 423  -------DDISTRLK-----------VTNYKTKKVRKNFAYTSGMAELEVPAESDY-LEV 463

Query: 465  NYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSW 524
             Y  K P    D K      + GT+++ +E FL++RKVKGP W+ I  F   PAP   S+
Sbjct: 464  RYSAKLPAPTLDRKYRTIAHIFGTNTNIVEQFLLERKVKGPCWMEIKNFKKNPAPS--SY 521

Query: 525  CKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAK 584
            CK E TV     I V + +   A  PP+ + AIN++++ NK    NEI   S++   +  
Sbjct: 522  CKQEFTVPDISSISVVTQAATTAPPPPLVICAINVRSILNKGN--NEIAMISMLTHDRFP 579

Query: 585  IDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644
            ++          P     F  V +  G  +P  FN     R     + V  CE+ ER LL
Sbjct: 580  LNRAA-----PNPPFTKAFCGVARPSGTGWPYDFNPAEKKR-----TKVTKCEN-ERTLL 628

Query: 645  NRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGR 704
            N  +     +D D++V H+   F LD++  R    ++P   W+++ RLK  + P  R+  
Sbjct: 629  NWFLSMYGNIDPDLVVTHDAYDFQLDLICQRLMAMKIPQ--WARVSRLK-MKTPSTRRVD 685

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL---NKDRKEVGPHD 761
              F             GRL+CD    + +L++  SY L  L    L   + +RK+V   D
Sbjct: 686  DFF------------VGRLICDVKTSAEELIKSRSYDLNTLCAEVLKVQDGERKDVLLED 733

Query: 762  VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            +  MF+    L +LI+    D + +M L+  ++VLPL  Q+T I+GNL  +TL G RA+R
Sbjct: 734  IPAMFEKSAELGQLIDLTMQDNFYTMRLLCEMNVLPLALQITQIAGNLMNRTLHGGRAER 793

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKM-AKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
             E+LLLHAF  K YI+PDK     +TKM A Q +    E                     
Sbjct: 794  NEFLLLHAFNEKDYILPDKV----QTKMGATQEAGEPAE--------------------- 828

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF-TTVERSPDGLV 939
              RK K   AY+GGLVL+P KG YDK+ILL+DFNSLYPSIIQEYNICF T     P    
Sbjct: 829  -RRKPKSKAAYSGGLVLDPIKGFYDKFILLMDFNSLYPSIIQEYNICFTTVPPPPPGEET 887

Query: 940  PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL---DIQQQALKLTANSMYG 996
            P +  ++  G+LP  ++ LV+ RR VK  MK A GL+ +Q+   +I+Q ALKLTANS+YG
Sbjct: 888  PTILQTEEMGILPRQVRKLVESRRAVKQLMK-APGLEPEQMMQYNIRQMALKLTANSLYG 946

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLG++ SRFYA+ +A LITQ+GREIL +T  +V+  ++ +VIYGDTDSIMI++ I D  +
Sbjct: 947  CLGYTRSRFYAQHMAALITQKGREILMNTKSIVE-KMDYQVIYGDTDSIMINTNIVDYDQ 1005

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
               I   + Q VN+ YKCLE+D+DG+YK +LLLKKKKYAAV +   +       E KGLD
Sbjct: 1006 VFKIGASIKQFVNRTYKCLELDVDGIYKYLLLLKKKKYAAVSITKANNEFKCTQELKGLD 1065

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
            +VRRDWS L+   G+F L++ILS++  ++ +E+IH  L K++ D+ +G        ITK 
Sbjct: 1066 IVRRDWSKLAVIAGNFVLAEILSDKPMDERIENIHAKLEKLKTDLLTGATYPSLLDITKQ 1125

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LT+    Y D+   PHV VA+R+ ++  +     GD V YII C+ GTSS +     +RA
Sbjct: 1126 LTRALNEYSDSSQLPHVTVAMRMNKT-RNRNFKRGDMVGYII-CDDGTSSPA----MKRA 1179

Query: 1237 RHPDELK--KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
             H DELK      K   D+DYY +QQ+ PVV R+C  +EGT   RLA  LGLDP KFQ+ 
Sbjct: 1180 YHIDELKDPANKDKLKPDVDYYLAQQVFPVVFRICEPLEGTDACRLALALGLDPKKFQAL 1239

Query: 1295 PSETM-SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
             + +   +D +          ++YR C      C +C S        + +     +   K
Sbjct: 1240 GATSRDGNDHAEGEAVQKTIAQKYRMCHRFEFKCVACGSN-------NPVAAGFRKDGGK 1292

Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
             ++ +      RC     +V      P  I NQ+     G +  +Y+  M+CD+      
Sbjct: 1293 QKSVFE-----RCANEKCDVRPLHYLPA-IKNQLTLAIRGDIKRFYERWMVCDN-----P 1341

Query: 1414 TCSLNLRLIGDAERGTVCPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
             CS+N RL           N P C     G LV++Y+E DLY QL Y+ ++ D      K
Sbjct: 1342 ICSVNTRLSSQ----VATKNNPNCLHCLKGLLVQQYSETDLYLQLNYYNYIFDLSHYSSK 1397

Query: 1470 MEISAKIPLEKELNKIRPVVA--LAASTVQRIRERCAYGWVKLND 1512
               +  + + +  +K+R +V   L  S    +R    Y    +ND
Sbjct: 1398 FTRTLPLDIREAHDKLREMVRQFLVQSKYATVRMSTLYMNYAIND 1442



 Score = 47.0 bits (110), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 4  EQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYD 63
          E P    R + R  +   R  ALERL+A +  G ++   VG   +++N +YD V E EY 
Sbjct: 3  ESPGSDQRSKRRKIDKHGRFAALERLRAAKATGVKNTYEVG---EIQN-VYDEVDESEYA 58

Query: 64 ALVARRREEARGFIVDDDGLGYG 86
           ++  R  E   F+ DDDG GYG
Sbjct: 59 RIMNERARE--DFVDDDDGSGYG 79


>gi|259790|gb|AAB24152.1| DNA polymerase-primase 180 kda subunit [Drosophila melanogaster]
          Length = 1490

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 419/1174 (35%), Positives = 623/1174 (53%), Gaps = 125/1174 (10%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVV 372
            D+ +  +   E +  +  D  L F+  +A+E      M G ++LFG+   G    S C+ 
Sbjct: 343  DDFEKSVLTTEQDSTISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLR 397

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
            V+N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL  
Sbjct: 398  VQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKL 445

Query: 433  LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHS 490
                +  V+     +A G  E+P   +Y L+++Y  K P   L AD K  +   + G  +
Sbjct: 446  EFFRSRKVTKSFAHHAIG-IEVPQSCDY-LEVHYDGKKPLPNLSADKKYNSIAHIFGATT 503

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   P P  +SWC  E+T+  PK++ +       A  P
Sbjct: 504  NALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 561

Query: 551  PVTVTAINLKTVFNKRQDVNEI-VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P+T+ ++N++++ N +   NEI ++ S++  ++  ID P       +P    H   + + 
Sbjct: 562  PLTLLSLNVRSM-NPKTSRNEICMTISMLTHNRFHIDRPA-----PQPAFNRHMCALTRP 615

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                +P+  N E     +K  S  +    SERAL    + +  K+D+D++V  +     L
Sbjct: 616  AVVSWPLDLNFEM----AKYKSTTVHKHDSERALSVWFLAQYQKIDADLIVTFDSMDCQL 671

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
            +V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD   
Sbjct: 672  NVITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKR 716

Query: 730  CSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLS 786
             + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    
Sbjct: 717  SAEECIRARSYDLQTLCKQVLKLKGSERMEVNADDLLEMYEKGESITKLISLTMQDNSYL 776

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            + LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAF  K YIVPDK      
Sbjct: 777  LRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK------ 830

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
             K   +RS  G  D     L+  DA            + K+  AYAGGLVLEP +GLY+K
Sbjct: 831  -KPVSKRSGAGDTDAT---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEK 876

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRM 964
            Y+LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SKT  G+LP  LK LV+ R+ 
Sbjct: 877  YVLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKE 936

Query: 965  VKTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            VK  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREI
Sbjct: 937  VKKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREI 995

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            L +T  LVQ  +N +V+YGDTDS+MI++ I D  +   I   + Q VNK YK  E+D+DG
Sbjct: 996  LTNTQQLVQK-MNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQEELDIDG 1054

Query: 1082 LYKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            ++  +LLLKKKKYAA+K+  KD  G      E KGLD+VRRDWS L+  VG   L ++LS
Sbjct: 1055 VFGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLS 1113

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            E+  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+
Sbjct: 1114 EKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRM 1173

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYAS 1258
             +   +     GD V Y+IC +     G++    QRA H DELK   D K  +D +    
Sbjct: 1174 NRER-NRLYKKGDMVDYVICLD-----GTTNLAMQRAYHLDELKTSEDKKLQLDTNLLLG 1227

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM--SSDPSSSLLFAVGDEER 1316
             QIHPVV+R+   +EGT   R+A+CLG+DP+KF+     T   +++ S          + 
Sbjct: 1228 HQIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTLQL 1287

Query: 1317 YRGCEPLILSCPSC-------SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKC 1369
            YR CEP    C +C       S+    P+      +    K       ++ W+  RC   
Sbjct: 1288 YRLCEPFRFQCVTCKTEQLMASAYRPGPSNSHIAVLQQCAKSDAKRHRFSTWQ--RCA-- 1343

Query: 1370 PEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGT 1429
                    IS  +   Q       +V  +YK  ++CD   C + T + +LR      + +
Sbjct: 1344 --------ISLQLSMRQ-------YVQRFYKNWLVCDHPDCNFNTRTHSLR------KKS 1382

Query: 1430 VCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
              P   +C +G L+R+YTE DLY QL Y   + D
Sbjct: 1383 HRPLCQKCRSGTLLRQYTERDLYNQLCYLRFMFD 1416


>gi|380481728|emb|CCF41675.1| DNA polymerase, partial [Colletotrichum higginsianum]
          Length = 1058

 Score =  591 bits (1524), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 403/1145 (35%), Positives = 594/1145 (51%), Gaps = 144/1145 (12%)

Query: 352  GTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM 409
            G+L LFGKV  K    + SC V V N+ R ++ +P    ++ ++             +PM
Sbjct: 11   GSLCLFGKVLNKKTGLYVSCFVKVDNILRKLFFLPAKQKYRAEK-------------TPM 57

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
                                    NV  Y +    R+YAF    IP    Y LK  YP+ 
Sbjct: 58   ------------------------NVGMYKIKACTRKYAFELPGIPKETEY-LKCLYPYT 92

Query: 470  DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEI 529
             P +     GE F  + GT+++  E F++ + + GP WL I+  +   A +  S CK E+
Sbjct: 93   KPVIDGSATGETFSHVFGTNTALFEQFVLWKNIMGPCWLKITD-ADFGALKNASHCKLEV 151

Query: 530  TVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
             V+ P  +   + S    + PP+T+ ++ L+T FN + +  EI++ S     KA ++   
Sbjct: 152  LVEHPNMVSTLNESTDNLDAPPLTLMSLVLRTAFNAKANKQEILAISARIYEKASLNDTT 211

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
             A   K P     FT++R   G  FP+GF   A +R       ++     E  +L   + 
Sbjct: 212  PAE--KLP--CRTFTLIRP-HGAAFPLGFETLAKERKR----GLIKTFRQESEILTFFLA 262

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTIF 707
            +L  +D DV++GH + G D  VLL+R    +  +  WS++GRLKR++ P    + G  +F
Sbjct: 263  QLDVVDPDVILGHQLEGVDYSVLLNRLHEKK--THQWSRLGRLKRTQWPASMNKVGGNVF 320

Query: 708  GSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQL--NKDRKEVGPHDVL 763
               A   +MS   GRLLCD         L R  S+SLT++    L  N  R+++     L
Sbjct: 321  ---AERQVMS---GRLLCDLANDAGKSALHRCQSWSLTEMCSLYLPGNNRRQDIDNEAAL 374

Query: 764  KMF--QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            K +  Q+ E +M  + + ETD      L   + +LPLT+ LTN++GN W +TL G RA+R
Sbjct: 375  KTWATQSKEGMMNYVTHMETDTHFITALALQVQLLPLTKVLTNLAGNSWARTLTGTRAER 434

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
             EY+LLH F   KYI PDK T+    +MA++               N+D          D
Sbjct: 435  NEYILLHEFHRNKYICPDKQTF--RGRMAQEE--------------NQD----------D 468

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DG 937
              +GK+   Y GGLV EP+KGLYDK++L++DFNSLYPSIIQE+NICFTTV+RS     + 
Sbjct: 469  EGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEFNICFTTVDRSALEQDED 528

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMY 995
             VP +P  +  G+LP L+  LV RR+ VK  MK   AS  ++   DI+QQALKLTANSMY
Sbjct: 529  AVPEVPKDQDQGILPRLIATLVNRRKQVKALMKDKGASQDQLATWDIKQQALKLTANSMY 588

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLG++ SRFYA+PLA L T +GREILRST +L ++N  L+VIYGDTDS+MI++ +++++
Sbjct: 589  GCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESN-QLQVIYGDTDSVMINANVENVS 647

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGL 1115
             A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +  KDG   E +E KGL
Sbjct: 648  DAFKVGQEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINLVQKDGKFIEQMEVKGL 707

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            DM RR++  LSKE+    L++ILS    E  +  IH  L  +   MR   +  +KY+I  
Sbjct: 708  DMKRREYCGLSKEISSKILNEILSGDETEKSIARIHEYLRDISGKMREQAIPTQKYIIFT 767

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             L K P  YP+A + P VQVALR    G       GD + YII  +  +S  +     +R
Sbjct: 768  QLGKAPTEYPNADSMPQVQVALREIAKG--KNVRRGDVISYIITGDPQSSDPA----PKR 821

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP 1295
            A  P ++ K D     D+++Y  +QI P V RLCA+I GTS  +LA+CLGLD  +++S  
Sbjct: 822  AFTPPDVMKADSGLSPDVEWYLGKQIFPPVERLCANIVGTSSSQLAECLGLDIRRYKSVQ 881

Query: 1296 SETMSSDPSS----SLLFAVGDEERYRGCEPLILSCPSC--SSTFDCPAVCSSICMSVSE 1349
             +      +      L   + D+ R+  C  L L C  C  SSTF+           +  
Sbjct: 882  DQQHGGSSNDVEIHPLESQIPDDVRFAECARLSLRCRKCKASSTFE----------GLLA 931

Query: 1350 KPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
            +P +          + C  C        IS   I  Q++       + YY+G ++CDD  
Sbjct: 932  QPDRVSAS-----GVLCGPC-----GATISTLSIVAQLEHALRTQTARYYEGWLVCDDSA 981

Query: 1410 CKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
            C   T  +N+        GT C   P+     C GR+  +YTE  +Y QL Y+  L +  
Sbjct: 982  CGMRTRQMNV-------YGTRCLG-PKGLARDCLGRMRYEYTEKAIYNQLVYYASLWNVD 1033

Query: 1465 RGIEK 1469
            +   K
Sbjct: 1034 KAKAK 1038


>gi|291001623|ref|XP_002683378.1| DNA polymerase alpha catalytic subunit [Naegleria gruberi]
 gi|284097007|gb|EFC50634.1| DNA polymerase alpha catalytic subunit [Naegleria gruberi]
          Length = 1206

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 389/1179 (32%), Positives = 621/1179 (52%), Gaps = 166/1179 (14%)

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPN 385
            F ++    L FY +D+ E       G + LFGK++   + + SCCV ++ +Q+ +Y +P 
Sbjct: 81   FSLEGKSKLDFYFVDSCEL-----DGRIILFGKIETLPNNYASCCVRLEKVQKTIYFLPR 135

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKR 445
             P+       KL    +ESRI                  E  +++L ++   +     +R
Sbjct: 136  EPI-----EAKLVNQEQESRIQ-----------------EELSEVLKISPEKFGFKFKER 173

Query: 446  RYAFGQAEIPAGENYVLK--INYPFKD-PPLPADLKGEN-FCSLLGTHSSALELFLVKRK 501
            +Y F  A++P  ++  +   + +  K+  P   + +G   F  +    +S LE F++KRK
Sbjct: 174  KYIFEDADVPYNKSITMVKVVIFDVKNLKPHLQEFRGSKLFSKVFHATTSGLEEFILKRK 233

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            + GPSWLSI KF    + Q +SWCK+E++ D P +I V +  +     PP+ + ++ +KT
Sbjct: 234  LMGPSWLSIQKFHVKSSGQ-LSWCKFEVSTDEPTNISVINDDR---SPPPLVLMSLKVKT 289

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            + N+ + VNEIV+   VCC   +       S+ KK      F V RK+D           
Sbjct: 290  IHNEEKKVNEIVA---VCCILQEYSFTGQQSQRKK------FIVARKVD----------- 329

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR- 680
                ++   SN +  E +E +L+NRLM ++ + D D+ +GH+   F+LD++L R +  + 
Sbjct: 330  ----DNSVDSNGIELEFNETSLINRLMAQIQQYDPDMYIGHSFLSFELDIILQRWKALKG 385

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS--------CIAGRLLCDTFLCSR 732
                +WS++GRL+ S  P L+           PG M+         +AGRL+CDT++  +
Sbjct: 386  TDGVLWSRVGRLRLSRYPMLQ---------PLPGGMNESTKSEKESLAGRLVCDTYIAVK 436

Query: 733  DLLREVSYSL-----TQLAKTQLNKD-RKEVGPHDVL---KMFQTLESLMELIEYGETDA 783
            + LRE SYSL     +QL +T L KD R  +   +++   K F ++E + +   + E DA
Sbjct: 437  EYLREKSYSLEDLRVSQLGETPLEKDIRNPLYDGNLILTAKYFSSVEGVEKFCAFVEHDA 496

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
             +SM+LM  LS++PLT++LTN +GNLW +TL G+R++R+EYLLLH F  +KYI+PDK   
Sbjct: 497  QVSMDLMEKLSLIPLTKELTNAAGNLWNRTLIGSRSERIEYLLLHEFYKQKYILPDK--- 553

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                                              S    ++G R P Y+GGLVL+PK G 
Sbjct: 554  ----------------------------------SRAFGKRGGRKPKYSGGLVLDPKSGF 579

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +  Y+LLLDFNSLYPSII E NICF+    + +    H  + KT  VLP +++ L+ RRR
Sbjct: 580  HHNYVLLLDFNSLYPSIILENNICFSNFLYTEEEREEH-KNDKT--VLPLVIETLLSRRR 636

Query: 964  MVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
              +  M+ A+G++  Q D++Q+ALKLTANS YGCLGF+ SRF+ K +AE IT +GR IL 
Sbjct: 637  QAQRQMEQATGVQRWQYDMRQRALKLTANSTYGCLGFTFSRFFCKQMAESITVEGRNILT 696

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK----CLEIDL 1079
             T  L++N+L   VIYGDTDS+MI +   +  +A +   ++ +E+N  ++     LEID+
Sbjct: 697  QTKQLIENSLRFSVIYGDTDSVMIATDTTNYDEALSKGEEIKKEINNSFRKGKGKLEIDI 756

Query: 1080 DGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            DGL++RMLLL+KKKY A +  + K G     +E KGLDMVRRDW  LS+ V  + + QIL
Sbjct: 757  DGLFRRMLLLRKKKYGALIHTKNKQGTIIPKLELKGLDMVRRDWCDLSRNVSQYIIDQIL 816

Query: 1139 ---------SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN 1189
                     ++ + E++V +IH  L ++ +D+R+ +V LE+Y++T  LTK PE Y DA N
Sbjct: 817  RPNEPVDCQTQPTPEEIVANIHTHLREIADDVRNNRVPLEQYILTTALTKEPEQYTDAIN 876

Query: 1190 QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK--KGDG 1247
             PHVQVAL ++++G          +P++I   +  +S S V  ++RA HPD  +  + D 
Sbjct: 877  HPHVQVALEMRRNG--QAVRLHQRIPFVITLRKDGTSSSKV--SERAVHPDTFRAEQKDN 932

Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL 1307
               +D ++Y +QQ+ P VSRLC  ++ T    +A+CLGL+   F++   +  + +    +
Sbjct: 933  NLELDYEWYLAQQVFPPVSRLCEYLQQTDKALIAECLGLEKKYFRTSYGDDDNME-EYKI 991

Query: 1308 LFAVGDEERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
            L    + + + G E P+  +C  CS+  +   V S++  ++S   +           L C
Sbjct: 992  LSRQEEYDEFEGIELPVNFTCDHCSNKVNLDLV-STLTNAISTTDTDMMQSITI---LDC 1047

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
            P C       R+S   I N  +      +  YY   +       +      +  +I    
Sbjct: 1048 PHC-----KSRMSTNKIVNLSQLNIRELIKKYYSNELKPSASNYRANISDSSTHVISMQP 1102

Query: 1427 RGTVCPNYPRCNGRLV---RKYTEADLYKQLTYFCHLLD 1462
             G     Y   NG +V   + +T  DL  +L Y   + D
Sbjct: 1103 GG-----YGVFNGSVVSVKQTFTPQDLQVRLRYLARMFD 1136


>gi|344228706|gb|EGV60592.1| hypothetical protein CANTEDRAFT_96043 [Candida tenuis ATCC 10573]
          Length = 1440

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 498/1574 (31%), Positives = 731/1574 (46%), Gaps = 228/1574 (14%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENP------IYDTVAEDEYDALVARRREEA 73
            +AR E L+ LK  R  GR        N++L +       IYD V ED +     R +   
Sbjct: 6    NARREKLKLLKQARELGR--------NVELSDQEEEAGGIYDEVDEDTFRQH-KRNQMMN 56

Query: 74   RGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLD-GQRSIKKQRIEKRGKKENNQNVR 132
              FIVDDDG GY D G +E W     P+   DE  D G +  + ++  K  K     N  
Sbjct: 57   DDFIVDDDGEGYVDNGADE-WDDTTRPNYYSDEEEDVGSKRKRTKKPAKVTKTSQINNFF 115

Query: 133  KPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERR 192
            KP                         F+ +   K K  E+ ID++L +F  D A   ++
Sbjct: 116  KPKG-----------------------FEIASKPKPKVVEADIDDILNDFD-DVAPAPKK 151

Query: 193  RRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWES 252
             R     +  F S +SV  N     N  N     S                   E    S
Sbjct: 152  PR-----VNVFGSTSSVNRNKPASRNPFNRPAATS----------------RRAEPTTAS 190

Query: 253  DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSA---TAGWKEVSGG 309
            D+S+++T   N  +    +K  V EDV    K    I    D         A     S  
Sbjct: 191  DDSSDVTISMN-DQPSSPIKTAVQEDVDTFSKDTDSIGDIDDESDEDDIIVARRPRASAA 249

Query: 310  NMVLDEGKSGLNCQESEFEVDDDGSLP--FYI--LDAHEQLSGANM-------------- 351
            N       S +  +     V +  S P   Y+  L+  E   G N               
Sbjct: 250  NRPQISNISAMKAERLSSPVRNTTSNPDVSYVDKLNEEEVFGGDNKDSFKMFWMDHCEVD 309

Query: 352  GTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK----DAEESRI 406
             +L LFGKV+  S    S  V +  + R ++ +P           K  K    D  E  +
Sbjct: 310  NSLILFGKVQTRSGQFVSGAVQINGLTRELFFLPR----------KYRKVGGEDDTEDEV 359

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKIN 465
            SP       QDV      EI   LL+   +      P K +YAF    +P   +Y LK+ 
Sbjct: 360  SP-------QDV----HEEIIPLLLDKYKLDTIRAKPEKMKYAFELTGVPKESDY-LKVL 407

Query: 466  YPFKDPP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPA 518
             PFK P      +PADL+GE F  + GT+S+  E F+V+R + GP WL ISK  F+S   
Sbjct: 408  LPFKTPKNKHLIMPADLEGETFSHVFGTNSNIFEAFVVQRNIMGPCWLEISKGDFNSI-- 465

Query: 519  PQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPP--VTVTAINLKTVFNKRQDVNEIVSAS 576
             +  + C+ E++VDSP  I+  +       +PP  +T+ +I ++TV N +Q+  E+ S S
Sbjct: 466  -RNSTHCQVEVSVDSPNYIKPLNERN----LPPPNLTLMSIAIQTVMNAKQNKQEVASVS 520

Query: 577  VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
            +        D P+   E  KP  L   T+VR ++   FP G N+ A  +  +     L  
Sbjct: 521  IGTYRNLPQDAPI--DENLKPDNL--VTLVRPVNAPTFPPGLNQLAQKQGLQ-----LRT 571

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
              +E+ALLN L   +   D D+ +GH +    LDVL+HR    +V  S WS +GR  R  
Sbjct: 572  FPNEKALLNCLSGMIKSQDPDIFIGHRLENISLDVLVHRMYDLKV--STWSNLGRRNRKA 629

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLN 751
             P  R G+   G   +  I     GRLLCD    + +L + +     S+ L ++     +
Sbjct: 630  WPD-RFGKGNGGFNNNLQIREVFHGRLLCD---IANELGQSLTPKCQSWDLPEMYDIVCH 685

Query: 752  KDRK--EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
            K+    EV  ++  K F+    L+  +    +   ++ E+ F + +L L++QLTN++GN 
Sbjct: 686  KEHSFLEVN-YNNNKFFEDTSFLLMALNENASSCKIAAEIAFSIQILSLSKQLTNLAGNA 744

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF-TYVKETKMAKQRSNHGVEDRNVEELTN 868
            W +TL G RA R EY+LLH F   K+I PDK   Y K T  A+Q      ED    + TN
Sbjct: 745  WSQTLYGTRAGRNEYILLHEFHKNKFICPDKEDKYHKNTSYAQQARLESTED----DATN 800

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
              +N              + P + GGLV EP+KGL+   IL++DFNSLYPSIIQE+NICF
Sbjct: 801  VTSN--------------KKPKFQGGLVFEPEKGLHKNCILVMDFNSLYPSIIQEFNICF 846

Query: 929  TTVER-------SPDGLVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-- 978
            TTVER         D  +P LP +    GVLP+LL  LV RRR VK  +K      ++  
Sbjct: 847  TTVERERYNITHDEDKDLPSLPENDLQPGVLPKLLNTLVSRRREVKKLLKDPKNTPVERA 906

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L + ++ L V+
Sbjct: 907  QYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAE-SIGLRVV 965

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDS+MI +G+ ++ +A     +   +VN++YK LEID+D  YK +LL  KKKYAA+ 
Sbjct: 966  YGDTDSVMIDTGVTELKEAIKTGNEFKAKVNERYKILEIDIDNTYKAILLHAKKKYAAMD 1025

Query: 1099 VQFKDGMPYEV--IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            + F      EV  +E KGLDM RR++  LSK++  F L+++L +   E  +  I+  L +
Sbjct: 1026 ISFDKRTGKEVTKLEVKGLDMRRREYCQLSKDISTFILNKVLLDADSEKALSEIYEYLEQ 1085

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            +   +++ ++ ++K+ I   L+K P  YP+AK+   VQVALR+++ G      AG  + Y
Sbjct: 1086 MANRIKNNEIPMDKFKINTKLSKDPTQYPNAKSMAQVQVALRMREQG--KVVKAGSVITY 1143

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            ++      S  SS    +RAR   E          D  +Y  +QI   V RL   I+G  
Sbjct: 1144 VVTAPVNESDTSSA--VERARSFQETMNKAAGLRPDPSFYLEKQIFAPVERLLERIDGID 1201

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDC 1336
              R+A CL +D SK+  +       +  + +  ++GD ER+R    L+L C  C   F  
Sbjct: 1202 MVRVAGCLSIDTSKYILRVKNGDVLNDIAPIESSIGDSERFRSASHLLLKC-KCGHQFRF 1260

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
              + +S    ++            ++ + C KC     A RI+     +Q++      +S
Sbjct: 1261 GGIQASHAYKIT------------FKGIACNKCQYTFSALRIN-----SQLETALRNHIS 1303

Query: 1397 MYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
             YY G ++CDD  C  TT  +++   R IG + +         C G +  KY++  LY Q
Sbjct: 1304 TYYGGWLVCDDGACGITTRQISVYGKRCIGSSGKAY------GCKGVMRYKYSDKALYNQ 1357

Query: 1454 LTYFCHLLDTQR-----------GIEKMEISAKIP---LEKELNKIRPVVALAASTVQRI 1499
            L YF  L D  +           G+E  ++ A IP   L     + R +       VQ+ 
Sbjct: 1358 LLYFDALFDVDKAKNNKLRPLYDGVEDGKVPADIPAATLNALTEQNRDLFGSCQQVVQKY 1417

Query: 1500 RERCAYGWVKLNDI 1513
             E C   +V +  I
Sbjct: 1418 LEDCGRRYVDMGSI 1431


>gi|322790930|gb|EFZ15596.1| hypothetical protein SINV_80520 [Solenopsis invicta]
          Length = 1459

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 486/1530 (31%), Positives = 756/1530 (49%), Gaps = 208/1530 (13%)

Query: 9    AGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVAR 68
            +GR + +  + + R  ALERLK  R GG+R      Y ++    IYD V E EY   V +
Sbjct: 3    SGRTKRQKVDKTGRLSALERLKEARSGGKRK-----YEVEELKNIYDEVDEKEYSNTVLK 57

Query: 69   RREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
            R+ +   +IVDD   GY ++G+E            D+ES+   R   KQR    G ++  
Sbjct: 58   RQRD--DWIVDDGESGYIEDGRE------IFDDDLDEESIQEAR---KQRHNMAGPRKKR 106

Query: 129  ----------QNVRKPNPSLTAAAAMMGKQR--LSAMLTSTAMFKKSKDEKVKESES--- 173
                      Q++ +  PS   A  +  K    L  +L+  +  KK+ + K+  S++   
Sbjct: 107  KEEDKKKGDIQSMIRNMPSKKDANVVQIKDDDILGELLSEISTDKKTNNPKLGSSKNKFC 166

Query: 174  -VIDEVLAEFAPDEADRERRRRSVSSNIKSFV---SVNSVKTNSQLVTNSTNSV---KEN 226
              +   + +     +  E+    +    K  +   S N  ++ SQ++ +  +++      
Sbjct: 167  HTVHSSIIQIHQSSSVTEKTTDKIFEKPKEKIVLKSNNIAQSASQIIEDEDDTIIFDPPQ 226

Query: 227  SDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKD------EVNEDVK 280
             + I+   +  NC  V+E  E K E  N+ +  + +N     + ++D      ++NE V 
Sbjct: 227  KESISKPAESNNCSKVQE--ESKVEDQNAKKSMESNNIQSASQIIEDASSPMVDINECVG 284

Query: 281  ECKKLN-----------AKISTEKDPL-LSATA---GWKEVSGGNMV-LDEGKSGLNCQE 324
            +   ++             I ++K+ + L  T      K +  GN V L E    L   +
Sbjct: 285  DLSTIDFDDGSMDFSSSVTIKSQKNGIDLQTTVCQTSVKSMKIGNAVDLTEIAPQLIKTK 344

Query: 325  SEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGK--VKAGSTHHSCCVVVKNMQRCVYA 382
             E EV       FY LDA+E     N GT+YLFGK  V +  T+ SCC++V  + R +Y 
Sbjct: 345  DEEEV-----FRFYYLDAYEN-PYKNPGTVYLFGKTYVSSHDTYCSCCIMVHCIPRRIYL 398

Query: 383  IPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSP 442
            +P   +  T           ES+++ M      +DV      E       + +  +    
Sbjct: 399  LPRKYIKNT-----------ESQLTTM------EDVY----KEFDEYASKMRIMEFNCKE 437

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
            VK+ Y+F +   P   +Y L++ Y  + P + +D  G     + GT  +ALEL L++RK+
Sbjct: 438  VKKHYSFEKEGTPKTSDY-LEVRYNARYPAIESDYSGLAIERVFGTTVNALELLLIERKI 496

Query: 503  KGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
            KGP WL I   S  P   R +WC  +I V S  D  +S  S+  A+ PP+ +  +N++  
Sbjct: 497  KGPCWLDIKNVS--PTAGRFAWCP-QIVVASDMD-NISLCSQENAK-PPLVIATLNVRMS 551

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
             N +   NE+V   V+  HK  +D      E  KP     F  V +     +P    ++ 
Sbjct: 552  LNAKLQ-NEVVMVVVLIHHKYNVD-----KEPPKPPYERQFCFVTRPRDTPWP----RQI 601

Query: 623  TDRNSKA-GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
             D   K   + V+ CE+    L   L   + K D D+++G++   F  DVL+ R    +V
Sbjct: 602  RDAILKVPNTEVIKCETESELLEELLT-LMQKADPDLIIGYD-CAFQFDVLMQRMFALKV 659

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-LREVSY 740
              S W+++GRLK S  P L +G+ I              GR +CD  + +++L L+  SY
Sbjct: 660  --SNWNRMGRLK-STTPPLLRGKIILNQA--------FVGRPICDIQVSAKELNLKVRSY 708

Query: 741  SLTQLAKTQLNKDR---KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLP 797
            +L  L    L       +E+ P +    F T + L+ L+     +A   + ++  L+V+P
Sbjct: 709  NLQSLCNAVLKTKEHECREITPAETPSFFNTADKLLNLMHMTLKEAKYIVTIVMDLNVIP 768

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ-RSNH 856
            L  Q+T ++GN+  +TL G RA+R EYLLLHAF  K YI PDK       K+ K+ R++ 
Sbjct: 769  LALQITCLAGNILSRTLLGGRAERNEYLLLHAFNLKDYITPDK-------KVEKKGRADD 821

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
            G                            ++  AY GGLVL+PKKG YDK +LL+DFNSL
Sbjct: 822  GPR--------------------------RKAAAYTGGLVLDPKKGFYDKLVLLMDFNSL 855

Query: 917  YPSIIQEYNICFTTVERSPDGLVPHLP---SSKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
            YPSIIQEYN+CFTT+  +    V  L    S+   GV+P  +  LV+ R+ +K  MKT +
Sbjct: 856  YPSIIQEYNLCFTTIPGAAYADVEQLSIPESNLELGVIPTEIHKLVKSRQQIKQLMKTPN 915

Query: 974  GLKIQQLD--IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
                Q++D  I+Q ALKLTANSMYGCLG ++ RFYAK LA L+T +GREIL  T  LV+ 
Sbjct: 916  LTPEQKMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILEDTKHLVEK 975

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
             L  EVIYGDTDS+MI++ I +     +I  K+++EVN +YK +E+D+DG+++ +LLL+K
Sbjct: 976  -LQYEVIYGDTDSLMINTNILEYDDVFSIGRKIMREVNNRYKKVELDIDGVFRYLLLLQK 1034

Query: 1092 KKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKYAAV + +  +G    V E KGLD+VRRDW  L+ + G   L  +L ++S +  +E +
Sbjct: 1035 KKYAAVTMSKLPNGQIQLVQEHKGLDIVRRDWCPLACDTGKKILDILLCDQSSDTRLEQV 1094

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
               L  V + ++ G   L  +VITK L+K P+AYPD K   HV VALRL ++G      A
Sbjct: 1095 VQILQNVAKSVKEGTAPLSSFVITKQLSKNPDAYPDKKQLSHVMVALRLNKAG-GRMWKA 1153

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GDT+PY+I CE GT + ++    +RA H DE+K  + K  +DI+YY   QI PVV R+C 
Sbjct: 1154 GDTLPYVI-CEDGTDASAT----ERAYHIDEVKNNE-KLKVDINYYLLSQIFPVVLRICE 1207

Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS- 1329
             IEG     LA+ LGL   +F  KP + +  + + +L  A+ D +R+  C PL   C + 
Sbjct: 1208 PIEGIDDVFLANNLGL---QFIYKP-KAIPCEATLNLPLAIND-DRFNNCLPLTFKCRNE 1262

Query: 1330 -CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP----GMIA 1384
             C++      +  ++            TE++  R L    CP   +  ++ P     +I 
Sbjct: 1263 RCNTEI---IIKDTV------------TEFHSGRQLSLSMCPN--QDCKLPPWKYANVIQ 1305

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC-NGRLVR 1443
            N V+      ++ YY G + C++  C   T  L L  +         P+ P C +  + R
Sbjct: 1306 NVVQLAMRKAITKYYSGWLECENPLCSNRTRRLPLDFVKKF------PDCPVCKDASINR 1359

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEIS 1473
             Y+  DLY QL Y+  + D  +   K  +S
Sbjct: 1360 VYSGTDLYNQLYYYYKIFDITQPAYKQLLS 1389


>gi|324500375|gb|ADY40178.1| DNA polymerase alpha catalytic subunit [Ascaris suum]
          Length = 1617

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 418/1152 (36%), Positives = 610/1152 (52%), Gaps = 107/1152 (9%)

Query: 330  DDDGS--LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            DDDG   + FY LDA E       GT+YLFG+V   S   SCCV+V+N+ R V+ +P   
Sbjct: 502  DDDGRSIVRFYWLDAFED-PIKFPGTVYLFGRVINNSISESCCVIVRNIWRQVFFLPRET 560

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
             F  + I   EK         + F        L +  E+ + L  + VS     P KR +
Sbjct: 561  RF-LNGIDSGEK---------VDF--------LEVNNEVQSLLKQIGVSIVKCRPTKRNF 602

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            AF    IP     VL++ Y    P L A++KG+ F  +  T ++A+E  L++  ++GPSW
Sbjct: 603  AFNDGIIPKNAE-VLEVQYSSTFPKLSAEMKGDTFSHVFNTTATAMERLLLEVDMRGPSW 661

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSP--KDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
            + I+ +    +PQ+ S+ K+E  VD    K +RV         +P VT+ AIN     + 
Sbjct: 662  MEITDY-VVSSPQQ-SYAKHEFIVDMERMKSLRVVECGD---PMPTVTLMAINFTATMSD 716

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            +++ NEI   S +   K  ++ P           L  + ++ K      P  F+ +   +
Sbjct: 717  KKE-NEITMISFIVDSKCSLNKPTTVR-----NKLERYCLLTKSSHRALP--FDLQQRLK 768

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
             ++  ++V    S+ER LL++ +  L + D DVL+GH++    L +L+ R +  ++  + 
Sbjct: 769  EARIDTHVFEA-SNERHLLSQFLCRLQEFDPDVLLGHDMPT-QLSILVARLEKLKI--AQ 824

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            WS+  RLKRS   K + GR+              AGRL+ D+   + +L++  SY L +L
Sbjct: 825  WSRTSRLKRSLAIK-QLGRS------KSAHWELTAGRLVVDSRSSAMELVKSRSYDLDEL 877

Query: 746  AKTQL--NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
                L  N   + V   D  + F     L++ I     DAW+++ ++  L+ LPL  Q+T
Sbjct: 878  GSNLLGINAASRTV---DSAESFLNSTRLIKAINQSWQDAWMALAIIAELNALPLFVQIT 934

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
               G +  +TL G RA+R E+LLLHAF+   Y+ P+K  Y  E K   Q +   + +   
Sbjct: 935  QTVGGVLSRTLMGGRAERNEFLLLHAFQKAGYVPPNKHQY--EHKKKTQSTEKAIAEDEQ 992

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
            EE             H D +  K+   Y GGLVLEPKKGLYDKY+LLLDFNSLYPSIIQE
Sbjct: 993  EE-------------HVDEKSSKKA-QYTGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 1038

Query: 924  YNICFTTVE---RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQ 978
            YNICFTTV+   R  +  VP LP ++  G+LP  ++ LV+RRR VK  M +   S  + Q
Sbjct: 1039 YNICFTTVDQSKRKDESEVPELPDNQNEGILPREIRVLVERRRDVKNLMSSEKLSDHQRQ 1098

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q +I+Q ALKLTANSMYGCLGF++SRFYAKPLA LIT +GREIL  T DLV+      VI
Sbjct: 1099 QYNIRQMALKLTANSMYGCLGFTHSRFYAKPLAALITSRGREILMHTKDLVEKQ-GYAVI 1157

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMI++G++D+ + K +  ++ + VNK +K LE+D+DG+YKR+LLLKKKKYA + 
Sbjct: 1158 YGDTDSIMINTGLEDLEQVKKLGLELKRMVNKCHKRLELDIDGVYKRLLLLKKKKYAGLA 1217

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKV 1157
            V   D    +  E KGLD+VRRDWS+L+K++G+  +  ILS     D +VE IH+ L  +
Sbjct: 1218 VDLNDSSKVKR-EMKGLDIVRRDWSVLAKDIGNEVVDMILSLSLGRDELVERIHDRLRAL 1276

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
            ++++  G + + KY I K LT+ P  Y D K QPH  VA RL  SG       GDTV YI
Sbjct: 1277 RKELDEGLIDISKYEILKQLTRDPNEYTDIKAQPHAAVARRLNASG-KFHFHRGDTVSYI 1335

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            IC       GS    AQRA H  E+     +  ID  YY + Q+HPVV RLC  IE T  
Sbjct: 1336 IC-----EDGSGNSAAQRAYHKSEI-TSRSELTIDTLYYLAHQVHPVVCRLCEPIEETDA 1389

Query: 1278 ERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCP 1337
             ++A+ LGLD S ++S+    M+     +  F++G    +  C P          TF+CP
Sbjct: 1390 VQIAEALGLDSSGYRSR-GVLMNEYHDDNEDFSLGLNYDFSRCRPF---------TFNCP 1439

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG-MIANQVKRQADGFVS 1396
                   + + E       +  F     C KC   +    I  G  + N++    +  + 
Sbjct: 1440 YDGCKAEIEIREALQGEGLDIGFCLG-ECQKCKRSL----IRYGAYLINRLHLAQNSAIE 1494

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLT 1455
             YY    +C+D  C Y T    + ++  +  G  C   PRC+ G + R+ T   L++Q +
Sbjct: 1495 EYYTSSFICEDIVCAYRT---RMHVLNWSREGVHC---PRCHIGIMRREKTARMLFEQQS 1548

Query: 1456 YFCHLLDTQRGI 1467
            +F  L D  + I
Sbjct: 1549 FFRSLFDLPKAI 1560



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLEN---PIYDTVAEDEYDALVA 67
           RR SR A  S R E   + KAL    R     + + + ++N   P+Y+ V EDEY  +V 
Sbjct: 141 RRSSRRAHISRRKET--QNKALEEVRRARATGLVHRVDVDNLIKPVYEEVDEDEYINIVR 198

Query: 68  RRREEARGFIVDDDGLGYGDEG-----QEEDWSVAGL 99
            R+ +   F+VDDDG GY D G      E++  + GL
Sbjct: 199 ERQND--DFVVDDDGSGYVDHGVDIFDDEDEMDMGGL 233


>gi|255713646|ref|XP_002553105.1| KLTH0D09064p [Lachancea thermotolerans]
 gi|238934485|emb|CAR22667.1| KLTH0D09064p [Lachancea thermotolerans CBS 6340]
          Length = 1453

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 488/1576 (30%), Positives = 752/1576 (47%), Gaps = 209/1576 (13%)

Query: 19   ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG-FI 77
            A  R E L++L+  R+   +S  S+    + ++ +YD + E+E+ ++  +R+E  R  F+
Sbjct: 3    AKNRIELLKKLQHARQN--KSSKSLYEEDETDDKVYDLIDEEEFRSM--KRQELLRDDFV 58

Query: 78   VDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPS 137
            VDDDGLGY D G +E W       +   E  D  R    +R  K  KK  N      + S
Sbjct: 59   VDDDGLGYVDRGVDE-WDDRNRDQNYSSEEDDKPR----ERAAKGSKKIKNDGKGVKSSS 113

Query: 138  LTAAAAMMGKQRL-SAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD-------- 188
              +   ++  Q   +A + S A  K S DE         D++L EF  +EA         
Sbjct: 114  GASIGDIIAAQHTKNAKVLSKAPKKFSLDE--------FDDILQEFDGNEASTAVGGLFG 165

Query: 189  ---------------RERRRRSVSSNIK-------SFVSVNSVKTNSQLV-TNSTNSVKE 225
                           RE    +    IK       SF +       S L  T +  ++ +
Sbjct: 166  AKSHRVVPKLENNIKREANAAATPPTIKRMKIDEQSFSTPQGGANTSPLAGTKTKANLLD 225

Query: 226  NSDLINNFVQIQNCDVV--EESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECK 283
            + DL      +Q+   +  E S ++      S+E    D+  E+  + +   +    +  
Sbjct: 226  DRDLQAMIDDVQSSPTITKERSADIVKSGGQSSE---EDSDEEITFRRRTIRSAAASQRS 282

Query: 284  KLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNC-----QESEFEVDDDGSLPFY 338
             ++ + S +  P ++A       SG + + +E    L+        S+   D+  S  FY
Sbjct: 283  NVDIRSSVQSSPFVTAPP---TPSGSSKLKEENPKSLSFIGKRYSRSDVISDNASSFKFY 339

Query: 339  ILDAHEQLSGANMGTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKL 397
             LD  E  S     TL LFGK+        S  + + N+ R ++ +P      +D     
Sbjct: 340  WLDFAEVDS-----TLLLFGKISTRENKLISAMIQILNLSRELFFLPREGKTASDV---- 390

Query: 398  EKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAG 457
                    I P+   K       GL+             N    P  ++YAF    IP  
Sbjct: 391  -----HGEIIPLLMEK------YGLE-------------NIRAKPEIKKYAFELPGIPHE 426

Query: 458  ENYVLKINYPFKDP-----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
              Y LK+  P++ P      +P+DL+G+ F  + G +++  E F+V++KV GP WL I+ 
Sbjct: 427  SEY-LKVLLPYRTPKNRNVTIPSDLEGDTFHHVFGGNTNIFESFVVQKKVMGPCWLEINN 485

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
                 A    S C  E+ V  P  I   +S KHV   P +   ++ ++T+ + +++  EI
Sbjct: 486  -GDFSALSNASHCDIEVQVSQPSSIE-PTSDKHV---PNLNCASLAVQTIMSSKENKQEI 540

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSN 632
            VS ++        D P+   E   P      T+VR   G  FP G    A     K  + 
Sbjct: 541  VSITLSQYKNLAQDLPI--PEDLAPN--DTITLVRPPVGSSFPTGLTHLA----KKNLTG 592

Query: 633  VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL 692
             L   ++E+ALL+     +   D DV++GH +    LD +L+R    ++P+  +S +GR 
Sbjct: 593  NLRLFNNEKALLSCFCAMMKSSDPDVIIGHRLENVALDTILYRCFELKIPT--FSCLGRR 650

Query: 693  KRSEMPKLRKGRTIFGSGASPGIM---SCIAGRLLCDTFLCSRDLLREV-----SYSLTQ 744
             R   P        FG   S         ++GRLLCD    S ++ + +     S+ L +
Sbjct: 651  ARKSWPDK------FGKNPSMNQFYNRDILSGRLLCD---ISNEMGQSLTPKCQSWDLPE 701

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            + +    K+++ +  +     +Q  + S++  ++   ++A +S E+ F + +L LT+QLT
Sbjct: 702  MYQVTCQKEQRALEINYQNPQYQNDVNSMIMALQENVSNALISAEIAFRIQILSLTKQLT 761

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK-MAKQRSNHGVEDRN 862
             ++GN W +TL G RA R EY+LLH F    YIVPDK     ETK M  QR         
Sbjct: 762  VLAGNAWCQTLGGTRAGRNEYILLHEFERNNYIVPDK-----ETKSMRNQR--------- 807

Query: 863  VEELTNEDANFDN-DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
             ++   E+A  D  D      +K K    Y GGLV EP+KGL+  Y+L++DFNSLYPSII
Sbjct: 808  -QQRAREEAGLDGGDEVQVSSKKAK----YQGGLVFEPEKGLHKNYVLVMDFNSLYPSII 862

Query: 922  QEYNICFTTVERSPDGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
            QEYNICFTTVER P  +  +P++PSS+   GVLP LL +LVQ+RR VK  +KT     K 
Sbjct: 863  QEYNICFTTVERDPSNIDELPNVPSSEMAQGVLPRLLASLVQKRREVKKLLKTEPDPHKR 922

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L ++ L L V
Sbjct: 923  TQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-LALTV 981

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            +YGDTDS+MI +G D   +A  I     + VN++Y+ LEID D +++++LL  KKKYAA+
Sbjct: 982  VYGDTDSVMIDTGSDSYMEAIKIGENFKKLVNERYRLLEIDTDNVFRKLLLHAKKKYAAL 1041

Query: 1098 KVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
             V F K G    ++E KGLDM RR++  LSKEV    L  ILS++  E  ++ ++  L  
Sbjct: 1042 TVVFDKSGAEKTLLEVKGLDMRRREYCPLSKEVSTHVLETILSDKEPETALQDVYEYLED 1101

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            ++E + +  + ++KY I   L+K P+AYP  KN P VQ ALR++++G      AG  + +
Sbjct: 1102 IREKVENNTIRVDKYKINTRLSKDPKAYPGGKNMPAVQAALRMREAGRVV--KAGSVITF 1159

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +I  ++G    SS+  A+RAR  +E+   +     D  +Y  +QI   V RL   IE   
Sbjct: 1160 VITKQEGVEDDSSLSPAERARVLNEVMVKNNNLRPDPQFYLEKQIFAPVERLLERIESFD 1219

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSS-----LLFAVGDEERYRGCEPLILSCPSCS 1331
              RL++ LGLD  +F ++       + SSS     L  ++ DEER++    L   C  C 
Sbjct: 1220 IVRLSESLGLDSRRFINRAGANGELNGSSSGSLQPLESSISDEERFKDVAALTFQCSGCQ 1279

Query: 1332 STFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQA 1391
              F    + +S    +S            +  L+C  C         +P  ++ Q++   
Sbjct: 1280 QRFPFGGIVASKRYQMS------------YSGLQCSSCQHT-----FAPLQMSAQLESAI 1322

Query: 1392 DGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLY 1451
               +SMYY G + CDD TC   T  +++        G  C N   C G +  +YT+  LY
Sbjct: 1323 RSHISMYYAGYLACDDPTCGNNTRQVSV-------FGKRCLN-ENCMGVMRYRYTDKQLY 1374

Query: 1452 KQLTYFCHLLDTQRGIEKM-----------EISAKIPLEKEL---NKIRPVVALAASTVQ 1497
             QL YF  L D  +  +                AKIP  + L    + R +  + +S VQ
Sbjct: 1375 NQLLYFESLFDVDKNKKDAVKPLYKPDHPDAPEAKIPTSQLLALGEQNRELFQVMSSVVQ 1434

Query: 1498 RIRERCAYGWVKLNDI 1513
            +    CA  +V ++ I
Sbjct: 1435 KYLANCARRFVDMDAI 1450


>gi|50305661|ref|XP_452791.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641924|emb|CAH01642.1| KLLA0C13255p [Kluyveromyces lactis]
          Length = 1430

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 485/1521 (31%), Positives = 743/1521 (48%), Gaps = 195/1521 (12%)

Query: 34   RGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG-FIVDDDGLGYGDEGQEE 92
            R  + + D +   ++ EN +YD + ED+Y +   +R+E  R  F+ DDDG GY D G +E
Sbjct: 17   RNNKSNRDVLDEQLEEEN-VYDLIDEDQYRS--KKRQELLRDDFVEDDDGSGYVDRGVDE 73

Query: 93   DWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSA 152
             W  +    S +D+ +D           K GKK N     K N      + ++ +Q +  
Sbjct: 74   -WDQSQEFYSDEDDGVDA----------KSGKKRNK--TSKNNKGKDTISDIIKQQNVKR 120

Query: 153  MLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTN 212
             +T        K +KV  +E   D++L+EF   +A+   ++  ++ + K   +   +   
Sbjct: 121  KMT----MPTEKPKKVSLAE--FDDILSEF---DAEPLVKKPKLTISRKQPANTTPMNYK 171

Query: 213  SQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKW---ESDNSTELTKRDNF--VEV 267
               V  S    K+      + V   +CD +EE  +++    +  +S  ++K+  +   + 
Sbjct: 172  HPQVDTSPLKGKDVVPFKADSVNPIDCDSMEEDHDIESLLNDVASSPSMSKQKTYQSEDD 231

Query: 268  KEKVKDEVNEDVKECKKLNAK----ISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQ 323
             E  +D+++   K+ K +  +    IS +  PL S+      V+  N  L          
Sbjct: 232  SEDDEDDIHFGRKKFKSIATQRQMNISAQTAPLTSSPT---YVTAPNTPLSTSTGSTQAT 288

Query: 324  ES-----------EFEVD-DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH-SCC 370
            ES           E  VD + GS  F+  D  E  S     +L LFGKVK       S  
Sbjct: 289  ESISGSLRQRIPKEDVVDAETGSFNFFWTDFTEVNS-----SLILFGKVKTRKNQVVSAM 343

Query: 371  VVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL 430
              +    R +Y +P           K   D  +  I P+   K       GL++  A   
Sbjct: 344  AQINGFNRELYFLPKEG--------KTASDVHQ-EIVPLLLDK------YGLQSLRA--- 385

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSL 485
                       P  ++YAF    IP    Y LK+  P+  P      +PA+L+G+ F  +
Sbjct: 386  ----------KPETKKYAFELPGIPHEAEY-LKVLLPYDTPKCKSITIPAELEGDTFSHV 434

Query: 486  LGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKH 545
             G + +  E F+V+RK+ GP WL IS      A Q  S C  E+ +DSP  I    S+ +
Sbjct: 435  FGGNQNLFESFVVQRKIMGPCWLKISD-GDFDAVQGASHCAIEVQIDSPNHI----SATN 489

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
                P +   +++++TV N +++  EIV+ S+        D+ +   +  KP  +   T+
Sbjct: 490  EKSSPSLNCISLSIQTVMNAKENKQEIVAISMAVFKNLSQDSSI--PQNLKPNEI--VTL 545

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
            VR   G  FP         ++ K  S  +   ++E+ LLN     L   D DV++GH + 
Sbjct: 546  VRPPQGSTFPPLLGP----KSKKELSGNVRLFNNEKTLLNCFCALLKVNDPDVIIGHRLE 601

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRKGRTIFGSGASPGIMSCIAGRLL 724
            G  LDVL HRA    +P   +S  GR  R   P K  K      S     +    AGRLL
Sbjct: 602  GVILDVLAHRAYELNIPQ--FSVFGRRLRKAWPDKFGKHN---NSMTQFIVRDLFAGRLL 656

Query: 725  CDTFLCSRDLLREVS-----YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYG 779
            CD    S ++ + ++     + L ++ +     +RK +  + +  ++Q  ES M L+  G
Sbjct: 657  CD---ISNEMGQSLTPKCQNWELNEMYQVSCGIERKSLEINYLNPIYQEDESQM-LLALG 712

Query: 780  ET--DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
            E   ++ ++ E+ F + +L LT+QLTN++GN W +TL G RA R EY+LLH F    YIV
Sbjct: 713  ENIENSIITAEVAFRIQILSLTKQLTNLAGNGWRQTLGGTRAGRNEYILLHEFNRNDYIV 772

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK     ET+  KQ      ED    ++++              +K K    Y GGLV 
Sbjct: 773  PDK-----ETRQMKQDRQQKNEDPMEPQVSS--------------KKSK----YQGGLVF 809

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP--DGLVPHLPS-SKTTGVLPEL 954
            EP+KGL+  YIL++DFNSLYPSIIQE+NICFTTV+R+P  +  +P +PS  K+ GVLP L
Sbjct: 810  EPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVDRNPQDNEELPDVPSREKSRGVLPRL 869

Query: 955  LKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLVQRRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 870  LANLVQRRREVKNLMKTENDASKKAQYDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 929

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L + +L L V+YGDTDS+MI +G D+   A  I     + VN++Y 
Sbjct: 930  VTNKGREILMNTRQLAE-SLGLTVVYGDTDSVMISTGCDNYMDAIKIGENFKKLVNERYS 988

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++KR+LL  KKKYAA+ V F K       +E KGLDM RR++  LSKEV   
Sbjct: 989  LLEIDIDNIFKRLLLHAKKKYAALNVTFDKQNNEKTTLEVKGLDMKRREFCPLSKEVSTR 1048

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ +LS++  E  ++ I+  + ++++ + + ++ ++KY I   L+K P++YP  KN P 
Sbjct: 1049 VLNILLSDKDSESALQEIYAYMEEIRQKVENNEIRMDKYKINTRLSKDPKSYPGGKNMPA 1108

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIIC--CEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            VQVALR++++G      AG  + ++I    +          +A+RAR  +E+        
Sbjct: 1109 VQVALRMREAGRV--VKAGSVITFVITKGSDDSDQDSDQANVAERARALNEVMNKKNGLK 1166

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET-----MSSDPSS 1305
             D  YY  +QI   V RL   IE     RL++ LGLD  K+ ++            D   
Sbjct: 1167 PDPVYYLGKQIFSPVQRLLERIESFDIIRLSEALGLDSRKYINRGGANGELNGRGMDTLQ 1226

Query: 1306 SLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNF-WRTL 1364
             L   + DEER+R   PL L+CP+C + F    + +S              EY F +  +
Sbjct: 1227 PLETTISDEERFRDSVPLELTCPNCDTKFVYGGIVAS-------------KEYRFVYSGI 1273

Query: 1365 RCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RL 1421
            +C  C        ++P  + +Q++R     +S+YY G + CDD TC   T  +++   R 
Sbjct: 1274 QCSNCNH-----IMTPIQVTSQLERIIRAHISLYYAGWVACDDSTCGNITRQISVFGKRC 1328

Query: 1422 IGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKE 1481
            + D            C G +  KY++  LY Q+ YF  L D Q    K ++    PL   
Sbjct: 1329 LLDG-----------CTGVMSYKYSDKQLYNQMLYFQSLFDLQ----KNKLQTLKPLYHS 1373

Query: 1482 LNKIRPVVALAASTVQRIRER 1502
             +   P  +L+ S VQ + E+
Sbjct: 1374 GDSNAPEKSLSHSEVQALAEQ 1394


>gi|190344967|gb|EDK36762.2| hypothetical protein PGUG_00860 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1438

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 502/1554 (32%), Positives = 744/1554 (47%), Gaps = 198/1554 (12%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG---- 75
            S RA   ++L+ALR   +     +  +   E+ IYD V E+ Y       RE  R     
Sbjct: 2    STRAARKDKLRALREARKGKSSLLDDSDVEESNIYDEVDENTY-------REHKRDQLMN 54

Query: 76   --FIVDDDGLGYGDEGQEEDWSVAGLPS--SSDDESLDGQRSIKKQRIEKRGKKENNQNV 131
              FIVDDDG GY D G++E W     P   S ++E +D  R                   
Sbjct: 55   DDFIVDDDGEGYVDNGEDE-WDENTRPKYYSDEEELVDEPRK------------------ 95

Query: 132  RKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRER 191
            RK  P   A  A     +++    S+A F  S      +S++ ID++L +F   E    +
Sbjct: 96   RKEKPVKIAKTA-----KINTFFKSSA-FPDSNPAPAVKSDAKIDDILDDF---EGPATK 146

Query: 192  RRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWE 251
            + +  +    S       K + +  T+  +  K  S  +  +  +      + S  +K +
Sbjct: 147  KFKFSTFGKTSSKPQQKAKPSYRFATSMKSEKKNPSSDVQIYDDMSPETPDQPSSPIKSK 206

Query: 252  SDNSTELTKRDNFVE---VKEKVKDEVNEDVKE----CKKLNAKISTEKDPLLSAT---- 300
            ++N       D   +   +KE+ K +   D ++     ++  + +S      L+A     
Sbjct: 207  AENEVIDISDDGDAKEANLKEEPKSQPESDSEDEVVVARRPKSAVSRTTMSTLTAVRTSE 266

Query: 301  -AGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGK 359
                  V    +   E  S  +   S  +  DDG   F+ LD  E  S     +L LFGK
Sbjct: 267  LPSSSPVRSQPVTFTEKVSQSDIVGSASDTTDDGFKMFW-LDYCEVDS-----SLLLFGK 320

Query: 360  V--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQD 417
            V  K G    S  V V  + R +Y +P        E  K+  D  E    P+       +
Sbjct: 321  VLTKEGKLV-SGVVQVNGISRELYFLPR-------EFRKV--DGMEDTEQPVTTDDVYHE 370

Query: 418  VALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP----- 472
            +A  L ++   +++            K +YAF  + IP   +Y LKI  PFK P      
Sbjct: 371  IAPHLLSKFGLEMIR-------AKKEKMKYAFELSGIPRDTDY-LKILLPFKTPKSRNLV 422

Query: 473  LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            LP+DL+GE F  + GT++S  E F++++ + GP WL I K  +  A Q  S C+ E+ VD
Sbjct: 423  LPSDLEGETFRHVFGTNASIFESFVLQQNIMGPCWLDI-KGGNFEAIQNTSHCQVEVAVD 481

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
            +PK   V+  S ++A  P +TV+AI+++T  N +++  E+VS S+        D P+   
Sbjct: 482  APK--AVTPISGNLAP-PNLTVSAISVQTTMNVKENKQEVVSVSIATYRDLPQDAPI--D 536

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
            + K+P  +   T+VR +     P G  K A     KA    L    +E+ LLN L   + 
Sbjct: 537  DKKQPDDM--VTLVRPVGSVNVPAGLEKLA-----KAQGLNLRILPNEKTLLNCLSAIVK 589

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
             LD DV +GH +    LDVL+HR    +V  + WS  GR  R   P  + G++  G   +
Sbjct: 590  NLDPDVYIGHRLENISLDVLVHRMYDLKV--TTWSTFGRRNRKVWPD-KFGKSS-GFSNN 645

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESL 772
              I     GRLLCD       +  E+  SLT   ++    +  +V  H   K    LE  
Sbjct: 646  LHIREIFQGRLLCD-------IANEMGQSLTTKCQSWDLSEMLDVVCH---KKHTALEIN 695

Query: 773  MELIEYGETDAWLSM-------------ELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
                 Y E  ++L M             E+ F + +L L++QLTNI+GN W  TL G RA
Sbjct: 696  FTNPRYAEDASFLLMALKENASNVKYTAEIAFAIQILSLSKQLTNIAGNAWSHTLSGTRA 755

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
             R E++LLH F   KYIVPDK     E K  K  S    ++  VE       N D+ T+ 
Sbjct: 756  GRNEFILLHEFHRNKYIVPDK-----EDKFHKNSSYQ--QEAKVEN------NEDDSTTV 802

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL- 938
              ++K    P Y GGLV EP+KGL+  YIL++DFNSLYPSIIQEYNICFTTV+R    + 
Sbjct: 803  TSNKK----PKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEYNICFTTVDRDDFNVS 858

Query: 939  ------VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKL 989
                  +P LP  ++  GVLP LL  LV RRR VK  +K      ++  Q DI+QQALKL
Sbjct: 859  HDEEKDMPVLPDRESVQGVLPRLLNTLVSRRREVKKLLKDPKNSLVERAQYDIKQQALKL 918

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L + ++ L V+YGDTDS+MI +
Sbjct: 919  TANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAE-SIGLRVVYGDTDSVMIDT 977

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF--KDGMPY 1107
            G+ D  +A  I  +    VN++YK LEID+D ++KR+LL  KKKYAA+      K G   
Sbjct: 978  GVTDFKEAIKIGEQFKLHVNERYKLLEIDIDNVFKRLLLHAKKKYAAMNASIDRKTGEEK 1037

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
             V+E KGLDM RR++  LSKE+  F L +IL++   E  +  +++ L K+   ++SG++ 
Sbjct: 1038 VVLEVKGLDMRRREYCQLSKEISTFILEKILADSDPEQALMDVYDYLEKMSAKIKSGEIP 1097

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + K+ I   L+K P  YP+ K  P V+VA+ L++SG      AG  + ++I   Q     
Sbjct: 1098 VNKFQINTRLSKDPNNYPNGKTMPPVRVAMLLRESG--KVIKAGTVITFVITAPQTEDEK 1155

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
            SS   A RAR   ++ K D  +  D +YY  +QI   V RL   IEG    R+A  L +D
Sbjct: 1156 SSP--ADRARPIQDVLKKDSIYRPDPNYYLEKQIFAPVERLLERIEGIDMMRVASSLDID 1213

Query: 1288 PSKF--QSKPSETMSSD--PSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSI 1343
              K+  + + S+T + +  P  S    + D ER+R C  L+L C  C   F    + +S 
Sbjct: 1214 TKKYVLRVRNSDTHAGEIVPLES---NISDVERFRQCSYLVLKC-KCGVNFRFGGIVASN 1269

Query: 1344 CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
               V+            +  + C KC       RI+   + N ++R     VS+YY G +
Sbjct: 1270 DYKVT------------FNGICCNKCHYTFPTFRIA-AQLENMIRRH----VSLYYAGWL 1312

Query: 1404 MCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHL 1460
            +CDD  C  TT  +++   R IG +   T       C G +  KY++  LY QL YF  +
Sbjct: 1313 VCDDGACGITTRQISVYGKRCIGASGTAT------GCKGVMRYKYSDRALYNQLLYFSSI 1366

Query: 1461 LDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIA 1514
             D  +   K E+    P+    +K      LA+  ++ + E+    +V    I 
Sbjct: 1367 FDVDKA-RKTELK---PVFDAFDKGSEPAKLASGQIEALAEQNREHFVHFQGIV 1416


>gi|347966812|ref|XP_321134.5| AGAP001929-PA [Anopheles gambiae str. PEST]
 gi|333469889|gb|EAA00974.5| AGAP001929-PA [Anopheles gambiae str. PEST]
          Length = 1589

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 409/1227 (33%), Positives = 622/1227 (50%), Gaps = 158/1227 (12%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKVKAGSTH--HSCCVVVKNMQRCVYAIPNGPLFQT 391
            ++ F+  DA    +    G LYLFG++ AG+     S CV V+N+ RC+Y          
Sbjct: 402  TMKFWFWDAWNDPNKCQ-GELYLFGRISAGNGRDFQSICVHVQNVDRCMYL--------- 451

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQL-LNLNVSNYIVSPVKRRYAFG 450
                 L ++      +P++         L +  E  N +   LN++ Y    V + +A+ 
Sbjct: 452  -----LARETHTETGAPVSM--------LDVYNEFCNDISTKLNITKYRTKVVTKSFAYT 498

Query: 451  QA----EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
             A    ++P    Y L++ Y  K    P D +      + G +++ +E FL++RKVKGP 
Sbjct: 499  SATSSLQVPVTAEY-LEVRYSAKLAAPPPDKRYRTIAHIFGANTNVVEQFLLERKVKGPC 557

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            W+ +   ++ P   + SWCK E+TV     + +++ +      PP+   +IN+++    R
Sbjct: 558  WMELR--NTTPRETKSSWCKREVTVPDISCVTLATDAAATVTPPPLVFCSINVRSTL--R 613

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             + NEIV  +++   +  +  P        P     +  V +    ++P+ FN       
Sbjct: 614  NNANEIVMITMLVNDRFSLAQPP-----PNPPFTRQYCGVTRPTNTVWPLNFNP------ 662

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            +   + V  CES ER LL+  +     +D D++V  +   F LD++  R    ++  ++W
Sbjct: 663  ADCKAKVTKCES-ERTLLSWFLSTFQVIDPDLVVTFDSEDFQLDLICQRLMTTKM--ALW 719

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S+IGRLK               S AS  +     GR++CD    + +L+R  SY L  L 
Sbjct: 720  SRIGRLK-------------VKSPASRRVDDFFVGRMICDVKTSAEELIRSRSYDLNTLC 766

Query: 747  KTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
               L     +R++V   ++  M++  +SL++L+     D + ++ LM  L+ LPL  Q+T
Sbjct: 767  AEVLKIGEGERRDVLLDEIPAMYEQADSLVQLVGLTMQDNFYTLRLMCELNALPLALQIT 826

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I+GNL  +TL G RA+R E+LLLHAF  K YI+PDK  +       K     G E    
Sbjct: 827  QIAGNLMNRTLHGGRAERNEFLLLHAFHEKDYILPDKVGFQGPGGGQKNGKGGGEE---- 882

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                          +  + RK K   AYAGGLVL+P KG YDK++LL+DFNSLYPSIIQE
Sbjct: 883  -------------AAAAEKRKPKNKAAYAGGLVLDPIKGFYDKFVLLMDFNSLYPSIIQE 929

Query: 924  YNICFTTV----------ERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            YNICFTTV             PDG    L P + ++   G+LP  ++ LV+ RR VK  M
Sbjct: 930  YNICFTTVLPPAVGEGQEGPDPDGDTALLEPTILATNEIGILPRQIRKLVESRRAVKQLM 989

Query: 970  KTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            K AS L    + Q +I+Q ALKLTANS+YGCLG++ SRFYA+ LA LIT +GREIL +T 
Sbjct: 990  K-ASDLSPELVMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHLASLITLKGREILMNTK 1048

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
             +V+  +N +VIYGDTDSIM+ + I D  +   I   + Q VNK Y+CLE+D+DG+YK +
Sbjct: 1049 SIVER-MNYQVIYGDTDSIMVSTNITDYEQVYRIGASIKQHVNKAYRCLELDVDGIYKYL 1107

Query: 1087 LLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
            LLLKKKKYAAV +  K DG      E KGLD+VRRDWS ++   G+  L+QILS+   ++
Sbjct: 1108 LLLKKKKYAAVSISKKADGAFVCTQELKGLDIVRRDWSRIAVLAGNMILAQILSDAPMDE 1167

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
             +E+IH  L K+++D+ +G ++L+   ITK LT+    Y DA   PHVQVA R+ +   +
Sbjct: 1168 RIENIHLRLEKLKDDLVAGTLSLQLLEITKQLTRSLNEYGDAGQLPHVQVAQRMNKQ-RN 1226

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM--IDIDYYASQQIHP 1263
                 GD V YIIC       G+S    +RA H DE++      +  +D++YY +QQIHP
Sbjct: 1227 RNYKRGDMVNYIIC-----QDGTSAAAMKRAYHIDEIRDPANADLLKVDVEYYLAQQIHP 1281

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDE------ERY 1317
            VV R+C  ++GT   RLA CLGLDP K+++  S            +  G+       ERY
Sbjct: 1282 VVFRICEPLDGTDACRLALCLGLDPKKYRTMVSGGGGGGEPDGGQYQDGESLIKTAAERY 1341

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
            R C     +C +C        V S        +PS      + +      +C  E E G 
Sbjct: 1342 RLCHRFEFTCVACKGK---NPVASGF------RPSAGGRHRSVFE-----RCANE-EGGT 1386

Query: 1378 ISPGM-------IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTV 1430
            +           I N++       +  +Y+  M+CD+       C+ N R+         
Sbjct: 1387 VCTAAPVQYLPAIVNELTLAVRADIRRFYQRWMVCDN-----PICNANTRMYSH----VA 1437

Query: 1431 CPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIR 1486
              N P C     G LV +Y+E DLY QL Y+ ++ D ++   K+  +    +    N+++
Sbjct: 1438 AKNNPYCLLCRKGLLVLQYSETDLYNQLCYYLYMFDLEQYSPKLTKALPPDIRNMYNRLK 1497

Query: 1487 PVVALAASTVQRIRERCAYGWVKLNDI 1513
                    TV+R ++R  YG V L++ 
Sbjct: 1498 -------ETVERFQQRSKYGVVNLSNF 1517



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 4   EQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYD 63
           + P    R + R  +   R  ALERLK ++  G ++   V    ++EN +YD V E EY 
Sbjct: 3   DSPGSEQRSKRRRIDKHGRFAALERLKKVKEVGTKNKYEVD---EIEN-VYDEVDEKEYA 58

Query: 64  ALVARRREEARGFIVDDDGLGYGDEGQE--EDWSVAGLPSSSDDESLDGQRSIKKQR 118
            +V  R  +   ++ DDDGLGY + G+E  ++  +  L S S   S  G +  K+ R
Sbjct: 59  KIVNERMHD--DWVEDDDGLGYVENGREIFDEDELDPLTSGSRSASKKGTKGKKRVR 113


>gi|66812196|ref|XP_640277.1| DNA polymerase alpha catalytic subunit [Dictyostelium discoideum AX4]
 gi|74855136|sp|Q54SV8.1|DPOLA_DICDI RecName: Full=DNA polymerase alpha catalytic subunit
 gi|60468293|gb|EAL66301.1| DNA polymerase alpha catalytic subunit [Dictyostelium discoideum AX4]
          Length = 1509

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 408/1183 (34%), Positives = 610/1183 (51%), Gaps = 177/1183 (14%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVK------------AGST-------------- 365
            DGSL F++L   E       G + LFGKVK             G+T              
Sbjct: 377  DGSLDFFLLTTEED----KQGRIILFGKVKLQASKSNKPGGGGGATKQTSITDEPVTKVP 432

Query: 366  --HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLK 423
              + SCC++++ M+R V+ +P           KL++D E + I         Q     ++
Sbjct: 433  LKYASCCIIIEKMERNVFFLPRD--------YKLDQDGESTTI---------QVTDTMIE 475

Query: 424  TEIANQLLNLNVSNYIVSPVKRRYAFG----QAEIPAGE-NYVLKINYPFKDPPLPADLK 478
             E+   +    + +Y +  VKR  AF         P GE +YV K++YP      P D+K
Sbjct: 476  AELKQLVDRSKIKDYKLKKVKRTSAFDYSVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIK 535

Query: 479  GENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR 538
            G  F    G  SS +ELFL+KRK+ GP+WL++S  +     Q+ S+ +YE TV S K I+
Sbjct: 536  GSTFRCAYGITSSPVELFLIKRKIMGPTWLTVSGIT-LNFDQKKSFARYEATVKSFKSIK 594

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
             S      +  PP+TV +I+ K+V   +   +E+V  S V       D P      +   
Sbjct: 595  PSMYKNEPS--PPLTVMSISTKSVM--KGSSHEVVMISSVIHESISADGPT-----ENQD 645

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
             + + T +R L G +FP  F K      S    NV  C +SER LL+     +   D DV
Sbjct: 646  SIKYITAIRPLTGQVFPPDFQKPGA---STTKQNVTIC-TSERNLLSFFCETVLNADPDV 701

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
              GHNI G+D++V+L R +  +V    W+ IGRLKRS   +                   
Sbjct: 702  FAGHNIIGYDIEVILDRLEKLKVME--WAFIGRLKRSSFDRFNH---------------- 743

Query: 719  IAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE 777
            I+GRL+CD++L  ++ L +E +YSL +L+K QL+ ++ E+    +   F+T + L   IE
Sbjct: 744  ISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPYFETTKKLNIFIE 803

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
              E D ++   L+F L V PLT+QLTN++GN W K+L+  RA+R+EYLLLH F  KKY++
Sbjct: 804  INENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLL 863

Query: 838  PDKFTYVKETKM-----AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYA 892
            PDK  Y K +       AK + NH                                 AY+
Sbjct: 864  PDKI-YQKSSSSGGGGGAKDKDNHA--------------------------------AYS 890

Query: 893  GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------DGLVPHLPSS 945
            GGLVL+PK   YD+Y++LLDFNSLYPSIIQEYN+CFTT+ R         + + P  PSS
Sbjct: 891  GGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTTINRVKRDDGKWEEAMPP--PSS 948

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSR 1004
               G+LP++L  LV +RR +K  M+      I+ Q DIQQQA+KL ANSMYGCLGFS+SR
Sbjct: 949  IEKGILPKVLHGLVSKRREIKKRMEQEKNKIIKAQYDIQQQAVKLIANSMYGCLGFSHSR 1008

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
            FYA PLAEL+T++GRE L+    +V N +  +VIYGDTDS+MI++G+    +A+ I  ++
Sbjct: 1009 FYALPLAELVTRKGRENLQKGASIV-NKMCYDVIYGDTDSLMIYTGVGTFNEAETIGKEI 1067

Query: 1065 IQEVNKKYK--CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER--KGLDMVRR 1120
             +++N +Y+   +EI LDG++KR+LL KKKKYA +K +F+        ER  KG+D+VRR
Sbjct: 1068 QKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLK-EFRIDSTTTKCERENKGIDIVRR 1126

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            D+  L+K++G + L+ IL       +   I   L  VQ+ ++   +A+EK++ITKTL+K 
Sbjct: 1127 DYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIITKTLSKQ 1186

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
            PE Y DA  QPHVQVAL+++  G       G+ VPYII     +SS        RAR P 
Sbjct: 1187 PEEYNDADIQPHVQVALQMRAKGLH--VQPGEQVPYII-THGNSSSDIKEEWHHRARAPS 1243

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE-TM 1299
            +++       +DID+Y SQQI P + R    I G  P  LA  LG+  +K+Q +      
Sbjct: 1244 DVESIQD---VDIDWYLSQQILPSIQRNTGPI-GMEPHELAQWLGMTGTKYQKQFDHLQQ 1299

Query: 1300 SSDPSSSLLFAVGDEE-RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
             S+      + +  E+ RY+ C+     CP C    +   +         +   K E+ +
Sbjct: 1300 QSNQDFKPRYTLSTEDLRYKQCKSFNFECPYCGQNNEFTGIVK------IDSEGKSESGF 1353

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
            +      C +C       +I    +ANQ++     ++  Y    + C +  C+    S N
Sbjct: 1354 D------CNQC-----HAKIPLKKLANQLQLNIRTYLKQYNDWDLRCTE--CE--KVSKN 1398

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL 1461
             +     E    C   P+C G++++  T + L+ Q+++F  L 
Sbjct: 1399 YK-----ETSYRCAR-PQCRGKMIQIMTSSKLFNQISFFSKLF 1435


>gi|268572495|ref|XP_002641336.1| Hypothetical protein CBG13184 [Caenorhabditis briggsae]
          Length = 1461

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 420/1168 (35%), Positives = 618/1168 (52%), Gaps = 129/1168 (11%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGS-THHSCCVVVKNMQRCVYAIPNGPL 388
            +D  ++  Y +DA+E +  AN GT+YLFGKVK G+ T  +C +VVKN+ R VY +P    
Sbjct: 338  EDVKAIRMYWIDAYEDVHKAN-GTVYLFGKVKTGANTWETCSIVVKNICRKVYFMPRSEN 396

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVK--- 444
             +T          EES ++              L  EI   L N  N   +    V+   
Sbjct: 397  LRT---------GEESNLA-------------DLHKEIGEVLKNKFNTHEFKCKMVEKEL 434

Query: 445  -RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R  +FG       +  ++++ YP     LP DLKG+ F     T  S LE  L+++K  
Sbjct: 435  IRDESFGNG--GGTKTPLMEVLYPADKGKLPNDLKGDTFSHTFNTSVSPLERLLIEKKFM 492

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP W+ +  +S      + S CKYE  VD  K   +        E+P + + A+N+ T  
Sbjct: 493  GPGWIDL--YSYVDPKAKTSNCKYEFEVDMEKMRNIKYLEGEDLEIPSIKLLALNIVTTL 550

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
            N+R++ NEI   S +   K  +  P   ++  KP  L     V K  GG  P    K   
Sbjct: 551  NERKE-NEICMISTLFNSKCDLAHPSSDNKAFKPRCL-----VTKPHGGSLPYDIQKRL- 603

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
               S+  S  +    +E+ALL   + E+   + D++VGH++S   + +L+ R +  ++P+
Sbjct: 604  --ESEKISKFVKTVPNEKALLTLFLAEINDEEPDMVVGHDLSAM-IALLVSRLEKLKLPN 660

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
              WS+I RLKRS    +  G+   G   S G     AGR++ D+ L + +L++  S+ LT
Sbjct: 661  --WSRISRLKRS----INIGK--LGHSKS-GQWELTAGRMMLDSKLAAMELVKSRSFDLT 711

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +L++  L  +R+E+  +++  ++   + L+ LI +   D+ LS+ ++  L+ LPL  Q++
Sbjct: 712  ELSQQILGTNRREIYSNEISNLYSDSKDLISLINWSWHDSLLSVRIVVRLNALPLYMQIS 771

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I G +  +T+ G RA+R EYLLLHAF     I PDK++  +  K  +Q+         V
Sbjct: 772  QIVGGITSRTMMGGRAERNEYLLLHAFEKADLIAPDKYSAFENKKQKEQQ---------V 822

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
            +E               D +K  +   Y+GGLVLEPKKGLY+  ILLLDFNSLYPSIIQE
Sbjct: 823  KE-------------EGDEKKAGKA-QYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQE 868

Query: 924  YNICFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQ 978
            YNIC+TT+  S D      VP   ++   GVLP  ++ LV+ RR VK  MKT     K +
Sbjct: 869  YNICYTTLVYSKDSDEQLSVPQ--NTDVEGVLPREIRKLVECRRDVKALMKTERNESKRK 926

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
            Q+DI+Q ALKLTANSMYGCLGF  SRFYAKPLA L+T +GREIL  + DLV+  +   V+
Sbjct: 927  QMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVE-KMGYSVV 985

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            YGDTDSIMI++   D+A AK +  ++ + VNK ++ LE+DLDG++KRMLLLKKKKYAA+ 
Sbjct: 986  YGDTDSIMINTNSMDLAMAKKLGSEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALT 1045

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL-SERSCEDVVESIHNSLMKV 1157
            +        E  E KGLD+VRRDWS L+KE+G   + +IL S  S ++++ SI + L  +
Sbjct: 1046 IN--PDTKVEAKELKGLDIVRRDWSQLAKEIGTAVVDKILDSSLSRDEMISSIDDLLRDI 1103

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
            ++ + SG V +E + I+K LTK P+ Y D K Q H  VA RL +SG        D V Y+
Sbjct: 1104 RQKLDSGTVPIEMFQISKQLTKNPDQYGDVKAQSHAAVAQRLNKSG-KFHMRHNDIVEYV 1162

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM-IDIDYYASQQIHPVVSRLCASIEGTS 1276
            I CE GT +G++    QRA H  E+   D K + ID+ YY +QQIHPVVSRL   IE T 
Sbjct: 1163 I-CEDGTDNGAT----QRAYHRTEMV--DNKDLKIDLLYYLAQQIHPVVSRLVEPIEETD 1215

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS------- 1329
              R+A+CLGLD + ++   +   +   +         +E Y  CE +++ CP        
Sbjct: 1216 AVRIAECLGLDSTNYRRAAAAQANQRAAEE--DCTWQQENYELCEGVVVVCPHPECGHSN 1273

Query: 1330 -CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVK 1388
                TFDC              P+ P      +    C +C    E+      +I+NQ+ 
Sbjct: 1274 VIRETFDCVT-----------DPTSPR-----FLIAGCSQCNGTWESSE-HQAVISNQID 1316

Query: 1389 RQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTE 1447
             Q   FV+ ++     CD+ TC++ T    ++       G  C    RC+ G L R+YT 
Sbjct: 1317 CQLGEFVARHHIAAYKCDEPTCEFKTRVQTMKW---CREGLEC---IRCSTGVLRREYTS 1370

Query: 1448 ADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
              L+ Q  +F  + D    + KM  S K
Sbjct: 1371 KQLFDQQMFFRQIFDVDAALRKMSDSQK 1398


>gi|50288441|ref|XP_446650.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525958|emb|CAG59577.1| unnamed protein product [Candida glabrata]
          Length = 1454

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 502/1582 (31%), Positives = 762/1582 (48%), Gaps = 238/1582 (15%)

Query: 26   LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEA--RGFIVDDDGL 83
            L++L+ALR+G   + +         + IYD + E EY     R+R+E     F+VDDDGL
Sbjct: 11   LKKLQALRKGKNANDEDD---EDNYDKIYDEIDEKEYRN---RKRQELLRDDFVVDDDGL 64

Query: 84   GYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAA 143
            GY D G EE+++     SS+D+      +  KKQ+ +K+                     
Sbjct: 65   GYVDRGVEEEFNSEEDYSSNDELDNSTSKGNKKQQPKKQ------------------IGD 106

Query: 144  MMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADR----ERRRRSVSSN 199
            M+       +L+   +  K K  K+ +     D++L EF  +E ++     R+  S+ S+
Sbjct: 107  MLKAHHSKVVLSGKQLDSKKKQIKLDD----FDDILNEFDNEEDEKPILTHRKNASLLSS 162

Query: 200  -----------IKSFVSVNS---------VKTNSQLVTNST-NSVKENS----DLINNFV 234
                       +  F S ++         V  NS  + N   NS+   S    D   N +
Sbjct: 163  SPTVKTAMKRSLNDFDSSDNENRRIKNKRVDMNSSPLKNQIKNSIPSESLGGGDTAVNSL 222

Query: 235  QIQNCDVVEESKEL-----KWESDNSTEL----TKRDNFVEVKEKVKD-----EVNEDVK 280
            +      V++S  L     ++E D+ST +    +  DN +  K K++      +VN D K
Sbjct: 223  ETSPTRHVQDSSLLNAVKSEFEQDSSTNIDSDDSDEDNVIVTKRKMRTATAVRKVNLDSK 282

Query: 281  ECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSG-LNCQESEFEVDD-----DGS 334
                 +  ++T   P+   T   K +  G+ V     SG LN    +F  D       G+
Sbjct: 283  SALSSSPYVTTPGTPI---TENKKSI--GSSVASYSMSGPLNFATQKFTKDQIIDPQTGT 337

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDE 393
               Y  D  E        TL LFGK+K  +  H S  + +  M R +Y +P        E
Sbjct: 338  FKMYWFDFTEV-----NNTLVLFGKIKLLTGEHVSAMIQIDGMCRELYFLPR-------E 385

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
              K E+  EE  I P+   K                     + N    P   +YAF    
Sbjct: 386  GRKPEEIHEE--IIPLLMDK-------------------YGLPNIRAKPEHMKYAFELPG 424

Query: 454  IPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            IP   +Y LK+  PF  P      +P DL  E F  + G +++  E F+V+ K+ GP WL
Sbjct: 425  IPHESDY-LKVLLPFNTPKSSRDTIPPDLSSETFHHVFGGNTNIFESFVVQNKIMGPCWL 483

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQD 568
             I K     A Q  S    E+ ++ P+DI+       + E+P +  T+I+++TV N +Q+
Sbjct: 484  EI-KGGDFSALQNASHTSIEVLINRPQDIK----PIDIKEMPELHCTSISIQTVMNPKQN 538

Query: 569  VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
              EIVS ++      K+D+P+   E   P  +   T+VR   G  FP G    AT    K
Sbjct: 539  KQEIVSITLGTYKNLKLDSPI--PENLDPTDI--VTLVRPPHGSSFPPGL---ATLAKQK 591

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  V    ++E+ LL      +  +D DVL+GH + G  LDVL+HR     +P+  +S 
Sbjct: 592  LGGQVRLF-NNEKTLLACFCAMMKVMDPDVLIGHRLEGVYLDVLVHRLHEFNIPT--FST 648

Query: 689  IGRLKRSEMP----KLRKGRT-IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS---- 739
            IGR  R   P    K+  G T +F       I   +AGRL+CD      ++ + ++    
Sbjct: 649  IGRRVRKVWPDKFGKVNSGLTHLF-------IREMVAGRLICD---IGNEMGQSLTPKCQ 698

Query: 740  -YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL-IEYGETDAWLSMELMFHLSVLP 797
             + L ++ +     D K +  +     +Q   +L+ + ++   T+  ++ E+ F + +L 
Sbjct: 699  NWDLAEMYQVTCQVDHKPLEINYQNTQYQDDVNLLTMALQENVTNCKIAAEVSFRIQILS 758

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LT+QLTN++GN W +TL G RA R EY+LLH F    YIVPDK T     KM  QR    
Sbjct: 759  LTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFARNGYIVPDKET----QKMRNQR---- 810

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                    L  +D +   D      +K K    Y GGLV +P+KGL+  Y+L++DFNSLY
Sbjct: 811  --------LRAQDGS---DEPEGSSKKSK----YQGGLVFDPEKGLHTNYVLVMDFNSLY 855

Query: 918  PSIIQEYNICFTTVERSPDGL--VPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKTASG 974
            PSIIQE+NICFTTV+R  + +  +P +PS+ K  GVLP LL NLV+RRR VK  MKT + 
Sbjct: 856  PSIIQEFNICFTTVDRDVENIDELPEVPSADKAQGVLPRLLANLVERRREVKKIMKTETD 915

Query: 975  -LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              K  Q DI+QQALKLTANSMYGCLG+ NSRFYA+PLA L+T +GREIL +T  L ++ +
Sbjct: 916  PHKRLQCDIRQQALKLTANSMYGCLGYVNSRFYARPLAMLVTNKGREILMNTRQLAES-M 974

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            NL V+YGDTDS+MI +  D+   A  I       VN++Y+ LEID+D ++K++LL  KKK
Sbjct: 975  NLIVVYGDTDSVMIDTNCDNYHDAIKIGNNFKTLVNERYRLLEIDIDNVFKKLLLHAKKK 1034

Query: 1094 YAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            YAA+ V   K+G    V+E KGLDM RR++  LS+++    L+ ILS++  E  ++ ++ 
Sbjct: 1035 YAALNVSINKEGKEETVLEVKGLDMKRREFCPLSRDISIHVLNTILSDKDPETALQEVYY 1094

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L  ++E +   ++ ++KY I   L+K P AYP  KN P VQVALR++++G      AG 
Sbjct: 1095 YLEDMREKIEKDEIRVDKYKINTKLSKDPSAYPGGKNMPAVQVALRMRKTGRMV--KAGT 1152

Query: 1213 TVPYIIC----CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
             + Y+I      E G +SG+   +A+RA   +E+         D ++Y  +QI+  V RL
Sbjct: 1153 VITYVITKPAEVENGEASGAQ-SVAERAYALNEVMMKGSNLRPDPEFYLEKQIYAPVERL 1211

Query: 1269 CASIEGTSPERLADCLGLDPSKFQSK---PSETMSSDPSSSLLFAVGDEERYRGCEPLIL 1325
               I+     RL   LGLD  K+  +        +S+    L   + D ER++    LIL
Sbjct: 1212 LERIDSFDSVRLISALGLDSKKYLRRGGIDGHGSNSNELEPLETTISDMERFKDSSNLIL 1271

Query: 1326 SCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIAN 1385
            +CP+C   F    + +S                + +  L+C  C         SP  +  
Sbjct: 1272 NCPNCKKEFPYGGIVAS------------NYYQHCYNGLQCKSCDY-----LFSPLQMTC 1314

Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKY 1445
            Q++R     +S+YY G + CDD TC   T  L++        G  C N   C G +  +Y
Sbjct: 1315 QLERAIRSHISLYYAGWLQCDDPTCGNVTRQLSV-------FGKRCLN-DGCTGVMHYRY 1366

Query: 1446 TEADLYKQLTYFCHLLDTQRGIEK------MEISAKIPLEK----ELNKI----RPVVAL 1491
            T+  LY QL +F  L D  +  ++      +E     P EK     +N +    R ++ L
Sbjct: 1367 TDKQLYNQLLFFDSLFDCDKNKKRELKPLYLEGDQDYPSEKLSDTSINALTEQNRDLLEL 1426

Query: 1492 AASTVQRIRERCAYGWVKLNDI 1513
              S VQ+    C   +V +  I
Sbjct: 1427 NHSIVQKYLSDCGRRYVDMATI 1448


>gi|330818780|ref|XP_003291516.1| hypothetical protein DICPUDRAFT_49884 [Dictyostelium purpureum]
 gi|325078288|gb|EGC31947.1| hypothetical protein DICPUDRAFT_49884 [Dictyostelium purpureum]
          Length = 1459

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 412/1198 (34%), Positives = 617/1198 (51%), Gaps = 185/1198 (15%)

Query: 328  EVDDDGSLPFYILDAHEQLSGANMGTLYLFGK-------------------VKAGSTHHS 368
            E + DGSL F++L   E       G + LFGK                     +G  + S
Sbjct: 353  EKNKDGSLEFFLLSTEED----RQGKIILFGKIKTNTTTDKKKDKKSTTSTATSGDKYSS 408

Query: 369  CCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIAN 428
            CC+ V+NM R V+ +P   +        L++  E + I     R         ++ EI +
Sbjct: 409  CCIFVENMIRNVFFLPRDYI--------LDESGESTTIQTTDER---------IEKEIKS 451

Query: 429  QLLNLNVSNYIVSPVKRRYAF----GQAEIPAGENY-VLKINYPFKDPPLPADLKGENFC 483
             +    + +Y +  VKR  AF        +P  E   V K++YP   P LP D++G  F 
Sbjct: 452  LMEKNRIKDYKIKKVKRTSAFDYQVAHKNLPISEELNVWKVSYPSTHPALPNDIQGSTFR 511

Query: 484  SLLGTHSSALELFLVKRKVKGPSWLSIS-----KFSSCPAPQRVSWCKYEITVDSPKDIR 538
               G  SS  ELFL+KRK+ GPSWL+IS     +FS     Q+ S+C+YEI   S KDI 
Sbjct: 512  CAYGITSSPSELFLLKRKIMGPSWLTISAGYQMEFS---IGQKKSYCRYEIKTKSFKDI- 567

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
              + SK +   PP+ V +I+ K++   +   +EIV  S V   K   D P      ++  
Sbjct: 568  --TPSKAIKPSPPLVVMSISTKSLV--KDSSHEIVMISAVIHEKISCDGPT-----QEES 618

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
             +   T +R L G +FP  F K+ +        N+  C +SE  LL+     +  +D DV
Sbjct: 619  NVKFITAIRPLSGKVFPPEFQKKDS-----TNQNLTIC-TSESNLLSFFCDTILNIDPDV 672

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            L GHNI G+D+++L  R +  +V    WS+IGRL++    K                 + 
Sbjct: 673  LAGHNIDGYDIEILFDRLEKLKV--IQWSQIGRLRKRNFDK----------------YNT 714

Query: 719  IAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLN-KDRKEVGPHDVLKMFQTLESLMELI 776
            I+GRL+CD++L  ++ L +E +YSL +L K+QL  ++++E+    +   + T + L   I
Sbjct: 715  ISGRLICDSYLVCKEFLPKEKNYSLVELCKSQLGIENKQEINYLAIEPYYDTAKKLNIFI 774

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
            E  E D ++  +L+F L V PLT+QLTN++GN W K+L+  RA+R+EYLLLH F  KKY+
Sbjct: 775  EINENDCFVIFKLIFKLLVFPLTKQLTNLAGNQWNKSLKSNRAERIEYLLLHNFYEKKYL 834

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
            +PDK        + K  SN G                                 Y+GGLV
Sbjct: 835  LPDKVY----QSIKKDSSNSG---------------------------------YSGGLV 857

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDG-LVPHLP--SSKTTGVL 951
            L+PK   YD+Y++LLDFNSLYPSIIQE+N+CFTT+  ER  DG  V   P  SS   G+L
Sbjct: 858  LDPKIDFYDRYVVLLDFNSLYPSIIQEFNVCFTTIPRERREDGKWVEAEPPSSSIKKGIL 917

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            P +LK+LV +RR +K  M+      + +QLDIQQQA+KL ANSMYGCLGFSNSRF+A PL
Sbjct: 918  PTVLKSLVGKRREIKKKMENEKNETQKKQLDIQQQAVKLIANSMYGCLGFSNSRFFALPL 977

Query: 1011 AELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
            AEL+T++GRE L+  V +V   +N EV+YGDTDS+M+++G+    +A+ I  ++ +++N+
Sbjct: 978  AELVTRKGRENLQKGVSIV-GKMNYEVVYGDTDSLMVYTGVPTFNEAETIGREIQKKINE 1036

Query: 1071 KYK--CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER--KGLDMVRRDWSLLS 1126
             Y+   +EI LDG++KR+LL KKKKYA +K +++        ER  KGLD+VRRD+  L+
Sbjct: 1037 SYRNSVMEIGLDGIFKRLLLFKKKKYACLK-EYRIDANTTATERENKGLDIVRRDYCGLT 1095

Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
            KE+G + L  ILS      +   I   L K  + ++     ++K+VITKTL+KP E Y D
Sbjct: 1096 KEMGQYLLDLILSGEEKIVLFTLIKEYLEKTSQKLKENSYEVDKFVITKTLSKPIEDYND 1155

Query: 1187 AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGD 1246
            A  QPHVQVA+  K  G+      GD VPY+I       +       QRAR P +++  +
Sbjct: 1156 ADIQPHVQVAILQKNKGHH--IQVGDQVPYVI-------TKGDKEWYQRARDPKDVESME 1206

Query: 1247 GKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ---SKPSETMSSDP 1303
                ID D+Y SQQI P + R    I GT   +LA  LG+  +K+Q   S  S     D 
Sbjct: 1207 D---IDTDWYLSQQILPSIQRNTGPI-GTEGAQLATWLGMTNTKYQRPDSAASAQSEYDK 1262

Query: 1304 SSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRT 1363
            +  ++++  D  RY+ C+     CP C +  +  +V            +K   +      
Sbjct: 1263 NRQIVWSSED-FRYKQCKSFSFECPYCYNDNEFTSV------------TKANNDDQIRSG 1309

Query: 1364 LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIG 1423
              C  C  +V   +     + NQ++     ++  Y    + C +  C+  + S       
Sbjct: 1310 FDCAHCNAKVPIKK-----LLNQLQINIRNYLKQYNNWDLQCTE--CEKVSKSY------ 1356

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKE 1481
              E    C   P+C G++++  T + L+ Q++YF  L  T        +S  IP+E +
Sbjct: 1357 -KENSYRCQR-PQCRGKMIQSMTSSKLFNQISYFLKLFKTDHV---NNLSDSIPVEDQ 1409


>gi|308497768|ref|XP_003111071.1| hypothetical protein CRE_04677 [Caenorhabditis remanei]
 gi|308242951|gb|EFO86903.1| hypothetical protein CRE_04677 [Caenorhabditis remanei]
          Length = 1489

 Score =  581 bits (1497), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 421/1182 (35%), Positives = 618/1182 (52%), Gaps = 139/1182 (11%)

Query: 328  EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTH-HSCCVVVKNMQRCVYAIPNG 386
            E +D  ++  Y +DA+E +  AN GT+YLFG+VKA +T   SC +VVKN+ R VY +P  
Sbjct: 347  ESEDTKAIRMYWIDAYEDVHKAN-GTVYLFGRVKASATSWESCSIVVKNICRKVYFMPRS 405

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               +T          EES ++ +   K++ DV   LK +         +   +   + R 
Sbjct: 406  HNLRT---------GEESNLAEL--HKEIGDV---LKNKFNTHEFKCKM---VEKELIRD 448

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
             +FG       +  ++++ YP     LP+DL+G  F     T  + LE  L+++K  GP 
Sbjct: 449  ESFGNG--GGTKTPLMEVLYPADKGKLPSDLRGNTFSHTFNTSVTPLERLLIEKKFMGPG 506

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPK-------------DIRVSSSSKHVAEVPPVT 553
            W+ +  ++   AP   + CK+E  VD  K              ++VS++S     +P + 
Sbjct: 507  WIELYNYAKPKAP--TTNCKHEFEVDMEKMRNIRYLEDDDLEKMKVSANSN--LAIPSIK 562

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            + A+N+ T  N++++ NEI   SV+   K  +  P        P       ++ K  GG 
Sbjct: 563  LFALNIVTTLNEKKE-NEICMISVLINPKCDLSHPS-----GDPKNFQRKCLITKPSGGS 616

Query: 614  FPMGFNKEATDRNSKAG--SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
             P    K       +AG  SN +   ++E+ALL R +  + + + D++VGH++S   + +
Sbjct: 617  LPYDIQKRL-----EAGHISNCVQTIANEKALLTRFLALINEQEPDMVVGHDLSA-TIAL 670

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            L+ R +  ++P+  WS+I RLKRS    +  G+   G   S G     AGRL+ D+ L +
Sbjct: 671  LVSRLEKLKLPN--WSRISRLKRS----INIGK--LGHSKS-GQWELTAGRLMLDSKLAA 721

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
             +L++  S+ LT+L++  L   R+E+   ++  ++   + L+ LI +   D  LS+ L+ 
Sbjct: 722  MELVKSRSFDLTELSQQILQTTRREIYSSEIPHLYSESKDLISLINWSWHDLLLSIRLVN 781

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            HL+ LPL  Q++ I G +  +T+ G RA+R EYLLLHAF     I PDK+      K  +
Sbjct: 782  HLNALPLYLQISQIVGGITSRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSFDAKKKKE 841

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            Q S                   DN     + + GK    Y+GGLVLEPKKGLY+  ILLL
Sbjct: 842  QESE------------------DNAEVTEEKKSGK--AQYSGGLVLEPKKGLYETLILLL 881

Query: 912  DFNSLYPSIIQEYNICFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            DFNSLYPSIIQEYNIC+TT+E + D      VP   ++   GVLP  ++ LV+ RR VK 
Sbjct: 882  DFNSLYPSIIQEYNICYTTLEYAKDSDEQLSVPQ--NTDIEGVLPREIRKLVECRRNVKG 939

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             MKT     K +QLDI+Q ALKLTANSMYGCLGF  SRFYAKPLA L+T +GREIL  + 
Sbjct: 940  LMKTERNEAKRKQLDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSK 999

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM 1086
            DLV+  +   V+YGDTDSIMI++   D+  AK +  ++ + VNK ++ LE+DLDG++KRM
Sbjct: 1000 DLVE-KMGYSVVYGDTDSIMINTNSVDLGAAKKLGSEIKKAVNKCHRLLELDLDGVFKRM 1058

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED- 1145
            LLLKKKKYAA+ +        E  E KGLD+VRRDWS L+KE G   + +IL      D 
Sbjct: 1059 LLLKKKKYAALTIN--PDTRVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDTSLTRDE 1116

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
            ++ SI + L ++++ + SG + LE + I+K LT+ PE Y D K Q H  VA RL +SG  
Sbjct: 1117 MISSIDDLLKEIRQKLDSGTIPLEMFQISKQLTRNPEQYSDVKAQSHAAVAQRLNKSG-K 1175

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM-IDIDYYASQQIHPV 1264
                  D V Y+IC       GS     QRA H  E+   D K + ID+ YY +QQIHPV
Sbjct: 1176 FHFRHNDIVEYVIC-----DDGSDNSATQRAYHRTEMT--DNKDLKIDLLYYLAQQIHPV 1228

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLI 1324
            VSRL   IE T   R+A+ LGLD + ++   +   S   +         +E Y  CE +I
Sbjct: 1229 VSRLVEPIEETDAVRIAESLGLDSANYKRAAAAQASQRAAEE--DCTWQQESYELCEGVI 1286

Query: 1325 LSCPSCS--------STFDCPA--VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVE 1374
            + CP            TFD      C  + +S                   C KC +  E
Sbjct: 1287 VICPYAECGETNVIRETFDSTTDPTCPRLLLS------------------GCSKCDKSWE 1328

Query: 1375 AGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNY 1434
            +      +I NQ+ RQ   FVS ++     CD+ TC++ T    ++ +     G  C   
Sbjct: 1329 SSE-HQAVIFNQIDRQLGEFVSRHHAAAFRCDEPTCEFKT---RVQTMKWCREGLEC--- 1381

Query: 1435 PRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAK 1475
             RC+ G L R+YT   L+ Q  +F  + D +  I K+  S K
Sbjct: 1382 VRCSTGVLRREYTSKQLFDQQMFFRQIFDVETAIRKLSDSQK 1423


>gi|345566186|gb|EGX49131.1| hypothetical protein AOL_s00079g3 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1402

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 399/1162 (34%), Positives = 594/1162 (51%), Gaps = 151/1162 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
             +DDGSL F+ +D  E       G L LFGKV  K    H S  V +  + R ++ +P  
Sbjct: 350  TNDDGSLRFFWMDYTEI-----GGCLCLFGKVFVKGTDKHASAFVKINGIMRKLFFLPRV 404

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS---NYIVSPV 443
                T E +++                        + +E+   L  L +S   ++   P 
Sbjct: 405  TKRSTGEEVEMSD----------------------VYSEVDELLTRLKISQGSDWKAKPC 442

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
             R                  I+ P   P +P    GE+F  + GT +S  E F++ R + 
Sbjct: 443  SRNNP---------------IHSP--GPQVPPGTNGESFSHVFGTGTSIFEQFVLARNIM 485

Query: 504  GPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            GP WL I    F+     +  SWCK E+ V SP  I  +  S++    PP+ + ++ ++T
Sbjct: 486  GPCWLHIEDPIFTGI---ENASWCKVELQVSSPNLISCAGDSENDI-APPLKLMSLAIRT 541

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDT--PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
                  +  EI+S +        +D   P+    W      S FT+ R + G  FP+GF 
Sbjct: 542  KIGHSDNKPEIISITGRVYDNVALDDTRPVDELPW------SCFTICRPV-GQSFPVGFQ 594

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
               + + +     ++  E +E  LL+  + +L   D D+ +GH +       L+HR + C
Sbjct: 595  SAISGQQT-----IIKTEKTEAGLLSLFLAKLQSTDPDIFIGHGLEENIYGTLIHRMKEC 649

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV- 738
            +V +  W +IGR++R++ P         G G        ++GRL+CD    S DL + + 
Sbjct: 650  KVLN--WHRIGRMRRNQWP------NNLGRGGYFAEKQIVSGRLMCD---LSNDLGKSLM 698

Query: 739  ----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES-LMELIEYGETDAWLSMELMFHL 793
                S+SLT++    L + R E+   + LK +    S  ++ + + +TD ++   +   +
Sbjct: 699  NRCQSWSLTEICNVILGERRTELDNEESLKTYAASGSGFLDYLGHAKTDTYMIAAVALRI 758

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             ++PL +QLTN++GN   +TL G RA+R EY+LLH F   KYI PDK             
Sbjct: 759  QMIPLAKQLTNLAGNSLARTLSGTRAERNEYILLHEFTKNKYICPDK------------- 805

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                 + RN ++ T++D   + + +  D +K      + GGLVLEP++GLYDK++L++DF
Sbjct: 806  ---SYDKRNSQKATDDDGADEEEDTRPDGKKKD---KFKGGLVLEPERGLYDKFVLVMDF 859

Query: 914  NSLYPSIIQEYNICFTTVERS--PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
            NSLYPSIIQE+NICFTTVERS  P+  VP +PS +  G+LP+L+  LVQRRR VK  MK 
Sbjct: 860  NSLYPSIIQEFNICFTTVERSDLPEDQVPEIPSEQAQGILPKLISTLVQRRRQVKGLMKD 919

Query: 972  --ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              A+  ++ Q DI+QQALKLTANSMYGCLG+  SRFYA+PLA L T QGREILRST +L 
Sbjct: 920  KRATPAQLSQWDIKQQALKLTANSMYGCLGYVRSRFYARPLAMLTTFQGREILRSTKELA 979

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            +++  L VIYGDTDS+MI++ +D  A A  I     + VN +Y+ LEID+D +++R+LL 
Sbjct: 980  ESS-QLRVIYGDTDSVMINTNVDIYADAIKIGNDFKKAVNDRYRLLEIDIDNVFQRLLLH 1038

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYAA+     DG P  V+E KGLDM RR++  +SK+V  + L +ILS    + V+E 
Sbjct: 1039 SKKKYAALNFS-ADGKP--VVEVKGLDMKRREYCQVSKDVSGWILKKILSGEDPDAVIEE 1095

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            IH  L  + ++MR   +   +Y I   L+K PE YP  K  P VQVALR +  G      
Sbjct: 1096 IHEYLRGIAQNMRENNIPFSRYTIYTKLSKDPEQYPGGKTMPQVQVALRRRSKG--DVVK 1153

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            A D + YII  + G +S      A+RA  P EL K D     D ++Y  +QI P V RLC
Sbjct: 1154 ANDVIAYIITGDGGNTSSP----AERAFTPQEL-KSDPTLKPDPEWYLLKQIFPPVERLC 1208

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS 1329
              I+GT   RLA+C  LD  K+Q   +   +      L   + DEER+R  +PL+L+C  
Sbjct: 1209 GPIDGTDAIRLAEC--LDTRKYQIASTTAQTESEIHPLESTLSDEERFRNTKPLVLTCLL 1266

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRI--SPGMIANQV 1387
            C +T     + S + +   +              L+CP     +    I  +P +IA QV
Sbjct: 1267 CKTTLSFGGLDSDLEICTPDG-------------LKCPN----IGCSNIFTTPVLIA-QV 1308

Query: 1388 KRQADGFVSMYYKGLMMCDDETCKYTT---CSLNLRLIGDAERGTVCPNYPRCNGRLVRK 1444
            +     + S YY+  + C+D +C   T   C    R IG    G        C G +  +
Sbjct: 1309 ESNIRSWTSQYYESWLACEDSSCGNRTRQVCVYGKRCIGPQGLGI------GCEGPVAYE 1362

Query: 1445 YTEADLYKQLTYFCHLLDTQRG 1466
            Y++  LY QL Y+  L D +R 
Sbjct: 1363 YSDKMLYNQLLYYSTLFDVERA 1384



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 18/189 (9%)

Query: 17  AEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGF 76
           A+AS RA+ LE L+ LR  G +      Y  + E  ++D + E EY   V R R +   F
Sbjct: 3   AKASQRAK-LEELRKLR--GSKQTRLSSYKTQDEQRLFDELDEIEYRK-VQRSRLDQDDF 58

Query: 77  IVDDDGLGYGDEGQEEDWSVAGLP---SSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
           +VDD+G GY + G +E W + G     SSSD+     + S K +R     K+EN    RK
Sbjct: 59  VVDDNGEGYVENGLDE-WDMCGRGDHVSSSDENDNPVRPSTKGKR-----KRENEIVTRK 112

Query: 134 P-----NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD 188
                 N   T+ AA    +  +        F      ++ ES      V    A D   
Sbjct: 113 DQDGSINKYFTSMAAQGATKHKAESTVEDKEFLSELLGQMDESRDSFRTVKKLKAQDPEP 172

Query: 189 RERRRRSVS 197
             RR+R++S
Sbjct: 173 TNRRQRALS 181


>gi|344301322|gb|EGW31634.1| hypothetical protein SPAPADRAFT_51626 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1445

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 398/1149 (34%), Positives = 589/1149 (51%), Gaps = 122/1149 (10%)

Query: 352  GTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             TL LFGK+       +  VV V  + R +Y +P     +  E      + E+  + P+ 
Sbjct: 314  NTLLLFGKILTKDGKLASGVVQVNGLCRELYFLPRKYRMENGE------ENEDEPVGPLD 367

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
               +L  + L             N+      P   +YAF  AEIP    Y LK+  PFK 
Sbjct: 368  VLDELTPILLE----------QYNLQELKAKPETMKYAFELAEIPKETEY-LKVLLPFKT 416

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVS 523
            P      +PA+++GE F  + GT+ +  E F+ +R V GP WL+I    F S    Q  S
Sbjct: 417  PKNQHMIMPANIEGETFNHVFGTNQNIFEAFVTQRNVMGPCWLTIEGGDFHSI---QNTS 473

Query: 524  WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKA 583
             C+ E+ VDSP  I V S   +  + P +T+T+I+++T+ N +++  EIVS S+   ++ 
Sbjct: 474  HCQVEVAVDSPSQISVISGV-NTPQPPNLTITSISVQTMMNPKENKQEIVSVSLATYYEV 532

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERAL 643
              D P+   E  +P  +   T+VR +   + P+G  + A    +K G  +  C  +E+ L
Sbjct: 533  PQDAPI--DENLQPNDI--ITLVRPVQSSLVPVGLQQLA----NKTGLKLRIC-PNEKVL 583

Query: 644  LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRK 702
            LN L   +   D DV +GH +    LDVL+HR     V  + WS  GR  R   P  + K
Sbjct: 584  LNCLAAMVKSHDPDVFIGHRLENISLDVLVHRMHAHNV--TTWSAFGRRNRKRWPHSINK 641

Query: 703  GRTIFGSGASPGIM--SCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
                 GSG S  ++     AGRLLCD    +     ++  S+ L ++ +  L K      
Sbjct: 642  S----GSGFSNNLLIREIFAGRLLCDIANEMGQSLTMKCQSWDLHEMFQVVLGKTH---A 694

Query: 759  PHDVLKM----FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            P ++  M     +    L+  ++  E +  ++ E+ F + +L L++QLTNI+GN W  TL
Sbjct: 695  PLEINFMQPGYSEDSHMLLMALKENEFNVKVTAEIAFAIQILSLSKQLTNIAGNAWSHTL 754

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE-ELTNEDANF 873
             G RA R EY+L+H F+   YIVPDK           Q   H     N E  L N D   
Sbjct: 755  SGTRAGRNEYILVHEFKRNNYIVPDK-----------QDQTHKNTSYNQEARLENID--- 800

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
            D+ T+   ++K    P Y GGLV EP+KGL+  YIL++DFNSLYPSIIQE+NICFTTV+R
Sbjct: 801  DDATTATSNKK----PKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVDR 856

Query: 934  S-------PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQ 983
                     D  +P LP  ++  GVLP LL  LV RRR VK  +K       Q  Q DI+
Sbjct: 857  DRFNVSHDEDRDLPVLPERESEPGVLPRLLNTLVSRRREVKKLLKDPKNTPFQRAQYDIK 916

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L +++  L V+YGDTD
Sbjct: 917  QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESS-GLRVVYGDTD 975

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            S+MI +G D+   A  +  +   +VN++Y+ LEID+D ++KR+LL  KKKYAA+ V  K+
Sbjct: 976  SVMIDTGADNFQHALKVGEEFKIQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNVSIKN 1035

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G+    +E KGLDM RR++  LSK++  F L +ILS    E  +  I++ L   +  + S
Sbjct: 1036 GVESTSLEVKGLDMRRREYCQLSKDISTFVLMKILSNMDPEQALSEIYDYLEDQKNKIIS 1095

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             ++ ++K+ I   L+K P  YP+ K+ P VQVALRL++ G      AG+ V Y+I     
Sbjct: 1096 NEILMDKFKINTRLSKDPANYPNGKSMPQVQVALRLRKQG--KVIKAGNVVTYVITSPAD 1153

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             S  S+   ++RAR   E+     K+  D  YY  +QI   V RL   IEG    R+A  
Sbjct: 1154 DSDKSTA--SERARSIQEVITNKDKYKPDAMYYLEKQIFAPVERLLERIEGVDMMRVATS 1211

Query: 1284 LGLDPSKFQSKPSETMSSDPS---SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LG+D  K+  +     S  P+   + L   + D ER+R    L+L C  C  +F    + 
Sbjct: 1212 LGIDTKKYILRVRN--SDGPNGEIAPLESNISDSERFRQSSYLVLKC-KCGHSFRFGGIV 1268

Query: 1341 SSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYK 1400
            +S    VS            +  + C KC       +++      Q+++     +++YY 
Sbjct: 1269 ASKDYKVS------------FNGVTCLKCDHTFSVLKLTA-----QLEQAIRHHIALYYS 1311

Query: 1401 GLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
            G ++CDD  C   T  +++   R IG + +         C G +  +Y++  LY QL YF
Sbjct: 1312 GWLICDDPACGIMTRQISVYGRRCIGSSGKAM------DCKGVMRYRYSDKALYNQLLYF 1365

Query: 1458 CHLLDTQRG 1466
              + +  + 
Sbjct: 1366 DSIFNIDKA 1374


>gi|430811166|emb|CCJ31341.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1367

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 384/1078 (35%), Positives = 558/1078 (51%), Gaps = 124/1078 (11%)

Query: 414  KLQDVALG-LKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP 472
            ++ +V +G +  E++       +  +   P  R+Y F   ++P   +Y LK+ YP+  P 
Sbjct: 356  QIHEVTMGDVYEEVSELFEKFKIDEFKSKPTSRKYVFEFPDVPHQCDY-LKVLYPYTKPT 414

Query: 473  LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            +P +  G  F  + GT++S +          GP WL I K       Q  SWC+ E+ V 
Sbjct: 415  IPQNTSGNTFSRVFGTNTSIM----------GPCWLHI-KEPQFTFGQNFSWCRLELGVV 463

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
            +P+ I   S S+     P +T+ +I L+ + N +++  EIV  S        +D P    
Sbjct: 464  NPECIFPISDSESNYPPPLLTLMSIALRKIINHKENKQEIVVISTRIYENISLDDPT--- 520

Query: 593  EWKKPGML--SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
                P  L    FT+VR +   +FP GF  EA  +  K    V   E +E +LLN  + +
Sbjct: 521  ---PPNNLPCQTFTIVRPIKQ-LFPTGF--EALAKKHKGTIKV---EKTESSLLNCFLAK 571

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
            +  +D DV +GH     D  +LL R +  ++ +  W +IGRL+R E PK+     IF   
Sbjct: 572  IQNVDPDVYIGHEWYTVDFGILLSRIKEKKIMN--WHRIGRLRRKEWPKMSGHSGIFAEK 629

Query: 711  ASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD-VLKMFQT 768
                     +GRL+CD      R L++  S++L++L   QL  +R E+     +     T
Sbjct: 630  L------LASGRLMCDLANELGRSLIKAQSWTLSELCSIQLGIERHEIDDEKAIFSWTDT 683

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             + +ME I + E D +    +   + +LPLT+QLTN++GN W +TL G RA+R EY+LLH
Sbjct: 684  AKGMMEYIIHCEVDTYFIAAIALKVQILPLTKQLTNLAGNNWARTLTGTRAERNEYILLH 743

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
             F  +KYI PDK   + ++K+                  NE+   D      D    K+ 
Sbjct: 744  EFHREKYICPDK--TLTKSKIID---------------INEEDEID------DTVPLKKR 780

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP---DGLVPHLPSS 945
              Y GGLV EP KGLYDKYIL++DFNSLYPSIIQEYNICFTT++R     D  +P LP  
Sbjct: 781  DKYKGGLVFEPIKGLYDKYILIMDFNSLYPSIIQEYNICFTTIDRHECDNDEKIPELPDE 840

Query: 946  KT-TGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            +   G+LP+L++  V RR+ +K  MK   AS ++  Q DI+QQALKLTANSMYGCLG++ 
Sbjct: 841  QIPQGILPKLIETFVNRRKQIKNLMKDKNASSIQRMQWDIKQQALKLTANSMYGCLGYTK 900

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            SRFYA+PLA LIT +GREILR+T +L + +LNL+VIYGDTDS+MI++ ++   +A  I  
Sbjct: 901  SRFYARPLAVLITYKGREILRNTKELAE-SLNLQVIYGDTDSVMINTNVEIFEEAIKIGN 959

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
            +  + VN++YK LEID+D +Y+RMLL  KKKYAA+ +   +G     I++K L       
Sbjct: 960  EFKKHVNERYKLLEIDIDNVYQRMLLHAKKKYAALHLIETNGKMEPKIDQKKLHR----- 1014

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
                     + L QILS +  E VVE IH+ L      M  G     K++I   L K PE
Sbjct: 1015 --------GYVLDQILSGKQTEFVVEKIHDYLRDFANKMHIGDFQPAKFIIYNKLGKNPE 1066

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             YP+ K+ PHVQVAL+ K  G S      D + YII   +  +      +A+RA  P E+
Sbjct: 1067 EYPNGKSMPHVQVALKKKAKGDSV--KVNDVIGYIITGNENDNR----HVAERACLPQEV 1120

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP---SETM 1299
             K      ID +YY + QI P + RLC  IEGT   RLA+CLGLD  K+Q      SE  
Sbjct: 1121 IKS-SNMKIDYNYYLANQILPPIERLCGPIEGTDRTRLAECLGLDIKKYQINEINNSEYK 1179

Query: 1300 SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
             S   S+L     DEER++G    I++C SC    D   +  S     SE          
Sbjct: 1180 ISTYESNL----TDEERFKGVASFIITCNSCHEKIDFKGLAKSKEFVNSE---------- 1225

Query: 1360 FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
                + C KC       +I    ++ Q++ Q     S+YY   ++C+D +C   T     
Sbjct: 1226 ---GIFC-KC-----GKKIPIYTVSAQLESQIRNHNSIYYNAWLLCNDPSCANRT----- 1271

Query: 1420 RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
            R IG   +     N   C G++  +Y++  LY QL Y+  L +  +     EI+ + P
Sbjct: 1272 RQIGVYGKRCSIKN---CQGQMYFEYSDKMLYTQLLYYDTLFNVNKA---REIANQFP 1323



 Score = 47.0 bits (110), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 20 SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVD 79
          +ARA+ L  L+AL+  G+   +S  Y +K E  IYD V ++ Y  +V R+R +   F+VD
Sbjct: 6  TARAK-LAELRALKAAGKTRLES--YKVKDEERIYDWVDDEGYRKIV-RQRLDQDDFVVD 61

Query: 80 DDGLGYGDEG 89
          D+G GY D G
Sbjct: 62 DNGEGYADNG 71


>gi|345482887|ref|XP_001603716.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Nasonia
            vitripennis]
          Length = 1528

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 407/1149 (35%), Positives = 600/1149 (52%), Gaps = 135/1149 (11%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAI----PNGPLFQ 390
            F+ LDA E       G +YLFGKV     +   SCC+ VKN+ R +Y +    PNG    
Sbjct: 406  FFWLDAFED-PYKQPGVVYLFGKVFVNELNEYVSCCLGVKNISRRIYCLLRDNPNG---- 460

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
                     D  E +       ++L++    LK           +  +    +  +YAF 
Sbjct: 461  --------SDENEEKSQGQRGWEELKEYTAKLK-----------IKEFKCRELSMKYAFE 501

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
            + + P    Y L++ Y   DPP  AD  G N  ++ GT  +ALEL L++R +KGP WL +
Sbjct: 502  REDTPTQAQY-LEVRYAATDPPFEADYSGPNIEAVFGTTVNALELLLIERNLKGPCWLDL 560

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA-EVPPVTVTAINLKTVFNKRQDV 569
               +  P     SWCK +       +  +   +  VA  +PP+ +  IN++  ++ +Q  
Sbjct: 561  K--APLPVDNAFSWCKVQANCTRIGETFLFVQNNQVAFNIPPIVIATINVQAAYDVKQQK 618

Query: 570  NEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
            NEIV+  ++  HK ++D         KP    H+ +V       +P+    +A DR  K 
Sbjct: 619  NEIVNIGILLHHKFQLDKAP-----PKPPFDQHYCIVTHPRITGWPI----KARDRLDKI 669

Query: 630  -GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
              + V+ C++    L   L   L + D D+ VG++  GF  +V++  +++ ++    WS 
Sbjct: 670  RQTKVIRCDTELELLEKFLE-ILQRSDPDIFVGYD-CGFQFEVIM--SKIFQLKVKNWSS 725

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAK 747
            +G+L+R   P   KG+   GS           GR +CD    +++L L+  SY L  L  
Sbjct: 726  VGKLRRLNPPYF-KGKMNLGS--------IFCGRPICDITNSAKELNLKVRSYDLASLCV 776

Query: 748  TQLNKDR---KEVGPHDVL-KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
              LNK     KEV   ++  K +   E + +LI+    +A   + ++  L++LPL  Q+T
Sbjct: 777  AVLNKKEYECKEVKSEEIASKYYANAEQVEKLIQSTMVEASYILGIVTELNILPLALQIT 836

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            NI+GN   +TL   RA+R E+LLLHAF  K YI PDK T  K+ + A+  + HG      
Sbjct: 837  NIAGNTLSRTLSAGRAERNEFLLLHAFYQKGYITPDKRTQTKKKEGAE--ATHG------ 888

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                 GK+ PAYAGGLVLEPKKG YDK ILL+DFNSLYPSIIQE
Sbjct: 889  ---------------------GKKKPAYAGGLVLEPKKGFYDKLILLMDFNSLYPSIIQE 927

Query: 924  YNICFTTVERSPDGLVPHLPSSKTT---GVLPELLKNLVQRRRMVKTWMKT---ASGLKI 977
            +N+CFTTV  +    V  L   + T   GV+P  ++ LVQ R  VK  MK    +  LK+
Sbjct: 928  FNLCFTTVPGAAFANVDDLELPEPTVEDGVVPTEIRKLVQSRVEVKKLMKAPNLSPELKV 987

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
            Q  +I+Q ALKLTANSMYGCLG ++ RFYAK LA L+T +GREIL+++  LV+   N EV
Sbjct: 988  Q-YNIRQLALKLTANSMYGCLGATHCRFYAKGLAALVTMKGREILQNSKALVEK-ANYEV 1045

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            IYGDTDSIMI++ I +  +  +I  ++ ++VNK YK +E+D+DG+++ +LLL+KKKYAAV
Sbjct: 1046 IYGDTDSIMINTNILEYDQVFSIGKEIKKDVNKTYKKVELDIDGVFRYLLLLQKKKYAAV 1105

Query: 1098 KV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
             + +   G      E KGLD+VRRDW  L+ ++G+  L Q+LS++S E  V  I + L +
Sbjct: 1106 TMSKSPSGQMQYTKELKGLDIVRRDWCGLACDIGNQILDQLLSDQSSESRVGKIFDILQQ 1165

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            V  ++R G + L   VITK L+K P  YP+ K   HV VALRL +SG      AGDTVPY
Sbjct: 1166 VGNNLREGNLPLSLLVITKQLSKNPHEYPNDKKLSHVLVALRLNESG-GRKWKAGDTVPY 1224

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            II CE GT         +RA H +E KK D    ID++YY  QQIHPVV R+C  IEG  
Sbjct: 1225 II-CEDGTDKTP----LERAYHIEEFKKNDN-LKIDVNYYLLQQIHPVVLRICEPIEGID 1278

Query: 1277 PERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDC 1336
               LA  +G+       KP +  ++     +   + D  RY  C PL   C + +  F+ 
Sbjct: 1279 DVLLAQHIGVGDL---YKPKKVHTAQEEGEVPLCIQD-NRYDNCHPLKFKCKNENCKFEI 1334

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
                  I  +++E    P           CP    ++   R +   I N+++++   F+S
Sbjct: 1335 -----EIKTTITEFAGVPRPTLAL-----CPNPACDMPPWRYADA-IQNRLQQEIRKFIS 1383

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC----NGRLVRKYTEADLYK 1452
             YY G + C++  C        L+++     GT+   +P+C    +G + R Y E +LY 
Sbjct: 1384 QYYYGEVECENPIC--------LKVMRRITMGTLG-TFPKCYNCLDGNVHRIYKETELYN 1434

Query: 1453 QLTYFCHLL 1461
            QL+Y+ HL 
Sbjct: 1435 QLSYYLHLF 1443



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 34/203 (16%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
           R + +  + S R  ALE+LK L+  G +    V     LEN +YD V E EY   V  R+
Sbjct: 9   RSKRQKIDKSGRLAALEKLKQLKGKGVKHKYEVD---DLEN-VYDEVDEKEYGKTVLDRQ 64

Query: 71  EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
            +   +IV DDG GY ++G+E            DDES+   R   KQ   K  +K     
Sbjct: 65  YD--DWIV-DDGSGYVEDGRE------IFDDDLDDESV---REAAKQSHLKGPRK----- 107

Query: 131 VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRE 190
            RK  P         GK+   A + S    KK  +EK+ E + ++ ++++E   D +D  
Sbjct: 108 -RKREPE--------GKKGSIANMFSNMANKKKVEEKI-EDDDILGDLMSELKND-SDTP 156

Query: 191 RRRRSVSSNIKSFVSVNSVKTNS 213
           +R+ +   N   F+S   + T S
Sbjct: 157 KRKETPRGN--KFLSTPKICTKS 177


>gi|320590664|gb|EFX03107.1| DNA polymerase alpha catalytic [Grosmannia clavigera kw1407]
          Length = 1510

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 437/1368 (31%), Positives = 672/1368 (49%), Gaps = 184/1368 (13%)

Query: 213  SQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVK 272
            +Q V     ++KE  D  +  +++ +   V  +      +    +L K + F+   +   
Sbjct: 249  AQAVAEQITTIKEEEDEDDGMMEVAHAGAVTAASVNLSAARPLKKLVKEELFLSPTKAAV 308

Query: 273  DEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDD 332
             E   D     KLN K++    P    TA  +  + G  V           + +  ++ D
Sbjct: 309  AEDKVDASAWNKLNDKLNVMSSP---KTAEAESHTMGGKV-----------DYKDAIEQD 354

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
            GSL FY  D  E       G+L LFGKV  K    H S  + + N+QR ++ +P      
Sbjct: 355  GSLNFYWTDYTEI-----HGSLCLFGKVLNKKTKKHVSSFLKIDNIQRKLFFLPR----- 404

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALG-LKTEIANQLLNLNVSNYIVSPVKRRYAF 449
                 +  +D EE+            +V++  +  E+   +  + V  +   P  R+YAF
Sbjct: 405  ----QRRSQDGEETG----------DEVSMADVYGEVDALMTKMGVPQHKTKPCTRKYAF 450

Query: 450  GQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLS 509
                IP    Y LK+ YP+  P + A+  G  +  + GT+++  E F++ + V GP WL 
Sbjct: 451  ELPNIPKEGRY-LKLLYPYTKPVI-AEAGGVTYSHVFGTNTALFEQFVLWKNVMGPCWLK 508

Query: 510  ISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDV 569
            I   ++  A +  S CK E+ V+ P  +   + +    EVPP+T+ ++ ++TV++ +   
Sbjct: 509  IED-ANYSALKNASHCKLEVLVEHPNMVSTLNDA-DAPEVPPLTMMSMAVRTVYDDKAKR 566

Query: 570  NEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
             E+++ S        +     A   K P     FTV+R    G FP+GF   A D+    
Sbjct: 567  QEVMAISARIYENISLSDTTPAE--KLP--CRTFTVIRPSSDG-FPLGFETLAHDKTRHR 621

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            G  ++     E  +L+  + ++  +D DV++GH + G D  VLL R +  + P+  WS++
Sbjct: 622  G--LVRPVRQEAEVLSFFLAQVSSVDPDVIMGHKLEGADYSVLLSRMRTLKTPN--WSRL 677

Query: 690  GRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSL 742
            GR + ++ P    R G  +F           IAGRLLCD    + D  R V     S++L
Sbjct: 678  GRFRLNQWPGSLGRGGSDVFAE------RQVIAGRLLCD---LANDAGRSVMFKCQSWTL 728

Query: 743  TQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            T++    L  D  R+E+     LK + +T E L++ + + E D +    L   + +LPLT
Sbjct: 729  TEMCSLYLGGDNQRRELDNEVALKTWAKTKEGLLDYVGHLEADTYFIAALGLRVQILPLT 788

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            + LTN++GN W +TL G RA+R EY+LLH F   KYI PDK          K R     E
Sbjct: 789  KVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDK---------QKFRGRGQGE 839

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D N +    +                     Y GGLV EP++GLYDK++L++DFNSLYPS
Sbjct: 840  DDNADGKKKD--------------------KYKGGLVFEPERGLYDKFVLVMDFNSLYPS 879

Query: 920  IIQEYNICFTTVER---SPDG-LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM--KTAS 973
            IIQE+NICFTTVER   S +G  VP +P+ ++ GVLP L+  LV RRR VK+ M  KTA+
Sbjct: 880  IIQEFNICFTTVERAALSDEGDAVPEVPTEQSQGVLPRLIATLVSRRRQVKSLMKDKTAT 939

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L+T +GREILRST +L + ++
Sbjct: 940  AEELATWDIKQLALKLTANSMYGCLGYTQSRFYARPLAVLVTYKGREILRSTKELAE-SM 998

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKK 1092
            +L+VIYGDTDS+MI++ +D++A A  +  +  + VN++Y+ L   D+D +++R+LL  KK
Sbjct: 999  SLQVIYGDTDSVMINANVDNVADAMRVGQEFKRTVNERYRLLGGFDIDNVFRRILLQAKK 1058

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            KYAA+ +    G   E +E KGLDM RR++  LSKE+    L++ILS    E  V  IH 
Sbjct: 1059 KYAAINMVEVGGKYVEKMEVKGLDMKRREYCALSKEMSTRILNEILSGEETEVSVTRIHA 1118

Query: 1153 SLMKVQEDMR-------------------SGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
             L ++   MR                   +  +   KY+I   L K P  YP+A+  P V
Sbjct: 1119 YLREMAAKMRGTSSDETEDNNGTTTTTTTASSIPAAKYIIFTQLGKEPTDYPNAETMPQV 1178

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            QVALR +  G     S GD V Y+I    GTS+ +S   A+RA    ++++ D     D+
Sbjct: 1179 QVALRERSQGRK--VSKGDVVSYLIAT--GTSAPTSEPAAKRAYTLADVQRKDSGLTPDV 1234

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP---------------SET 1298
            ++Y  +QI P V RLCA+I GTS  +LA+ LGLD  ++ +                  E 
Sbjct: 1235 EWYIGKQIFPPVERLCANIVGTSTAQLAENLGLDMRRYAAGGGGQGQHGSNGGMGVNGEL 1294

Query: 1299 MSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
            M   P  S    + D  R+R C  L L C  C +T     + S       E+  + E   
Sbjct: 1295 MEVHPLES---QIPDAVRFRDCARLQLRCRKCKATDQFEGLWSED----GEQTIQAEKAM 1347

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
            +        KC        +S   +  QV+       S YY+G ++CDD +C   T  ++
Sbjct: 1348 HVTPAGVACKC-----GAALSTLSVVAQVEHAVRMATSRYYEGWLVCDDPSCGQRTRQMS 1402

Query: 1419 LRLIGDAERGTVCPNYPR-----CNGRLVRKYTEADLYKQLTYFCHLLDTQR-------- 1465
            +        GT C   P+     C GR+  +  E D+Y QL Y+  L D  +        
Sbjct: 1403 V-------YGTRCLG-PKGLARDCLGRMRYEMGERDIYNQLVYYAGLFDVDKARTAVLAA 1454

Query: 1466 GIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
              +K E    + L  E N++R       + V+R  ++C   WV ++ +
Sbjct: 1455 AADKDEQDRVLAL-AEHNRVR--FGNVKAAVERYLDKCGRRWVAMDTL 1499



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 17  AEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGF 76
           ++ + R    E L+ALR+ G+++ DS  Y ++  + +Y+ V +D+Y  +V R R     F
Sbjct: 2   SKVAGRRSKFEELRALRKAGKKAFDS--YEVEDADKLYELVDDDQYKNIV-RSRLNQDDF 58

Query: 77  IVDDDGLGYGDEGQEEDWSVAGLPSSSDDESL----DGQRSIKKQRIEKRGKKE-NNQNV 131
           +VDD+G GY D+G+EE W  A +  S  D+++      ++S KK R E + K++ N++N+
Sbjct: 59  VVDDNGEGYADDGREE-WDRAHVYESDSDDNMVARTKDRKSSKKSREEDQAKRDANDRNI 117


>gi|256089821|ref|XP_002580953.1| DNA polymerase alpha catalytic subunit [Schistosoma mansoni]
          Length = 1017

 Score =  578 bits (1489), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 383/1002 (38%), Positives = 540/1002 (53%), Gaps = 126/1002 (12%)

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            K    ++S K    +S    V   PP+ + AIN+K+V  K    +EI+S  ++  +   +
Sbjct: 12   KLSTVIESQKSSDNTSDLMKVPPAPPLCLAAINIKSVTQKHSSHSEIISIGLLIDNAYLL 71

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D P+  S ++     +H+ V+        P     +        G+  +  E +ERALL 
Sbjct: 72   DRPIEKSLFQ-----THYLVLAPPKDAALPYDLRTKL----PSYGAQYIDVEPNERALLG 122

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS-EMPKLRKGR 704
            R +  L+KLD D+++GH++ G  +++L+ R    +VP   W ++GRL+RS   P     R
Sbjct: 123  RFLTRLHKLDPDIIIGHDLWGHQIELLIQRLNANKVPH--WHRVGRLRRSVNFPMNLNSR 180

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN-----KDRK---- 755
            +         I   + GRL+CDT + +R+L+R  +Y+L+ LA   L      KD K    
Sbjct: 181  SWI-------IRHSMPGRLVCDTKVSARELVRSRTYNLSDLASQVLGEVTSKKDDKSSQI 233

Query: 756  --EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
              E+   D+  +F   + + +LI++  +DA L + L   L VLPL  Q+T+I GN+  +T
Sbjct: 234  DIEIDSADLRCLFSNSDLVRQLIDFCLSDAHLVLRLCHQLQVLPLAMQITSICGNVLSRT 293

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G RA+R E LLLHAF    YIVPD     +     +     G++++ VE         
Sbjct: 294  LSGGRAERNEALLLHAFTQHGYIVPDPPVSHRGPHSNRHDEWDGIQEQAVE--------- 344

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                   D   G+R PAY GGLVLEPKKG YDKYILLLDFNSLYPSIIQE+NICFTTV+R
Sbjct: 345  -------DAGTGRRKPAYTGGLVLEPKKGFYDKYILLLDFNSLYPSIIQEFNICFTTVDR 397

Query: 934  SPDGLVPHLPSSKTT-----GVLPELLKNLVQRRRMVKTWM-KTASGLKIQ--QLDIQQQ 985
                LV    S K       G+LP  ++ LV+ R+ VK  +  T+SG   Q  Q + +Q 
Sbjct: 398  D---LVATTSSDKEVFDQEPGLLPAEIRRLVESRKEVKKLLANTSSGDAAQRAQWNTRQA 454

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ALKLTANS+YGCLGF+ SRF A+ LA L+T  GR +L +T DLV+ N+N+EVIYGDTDSI
Sbjct: 455  ALKLTANSVYGCLGFAASRFCARGLAALVTGLGRAVLMNTRDLVE-NMNMEVIYGDTDSI 513

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV-------- 1097
            M+++   D+  A AI  K+ QEVNK Y+ LE+D DG+Y  MLLL KKKYAA+        
Sbjct: 514  MVNTNTTDLLAALAIGEKIRQEVNKHYRLLELDTDGVYAAMLLLAKKKYAALSVINPVQW 573

Query: 1098 ----KVQFKDGMPYEVI----ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
                K+    G+  +V+    E KGLD+VRRDWS L+  VG  C++ +LS    + +++ 
Sbjct: 574  ATAAKISINQGLTPQVVCTKQEMKGLDIVRRDWSALAISVGRRCVAALLSGEPKDIILDR 633

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS---T 1206
            IH  L +  E +R G++ + +++ITK LTK PE Y DAK+QPHVQVALRL  S      T
Sbjct: 634  IHADLTETAEKVRQGKLPISEFIITKMLTKNPEDYSDAKSQPHVQVALRLNGSAADDKKT 693

Query: 1207 GC---SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL-----KKGDGKWMIDIDYYAS 1258
            G     AGDTV Y+IC       GS      R   P EL     K  DG   ID++YY +
Sbjct: 694  GTRRLRAGDTVEYVIC-----EDGSGQLATHRGYSPTELTSCLYKVSDGNLSIDVNYYLA 748

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM---SSDPSSSLLFAVGDEE 1315
             QIHPVVSRL A IEGTSP R+ADCLGLDPS ++     T+     + +  + F+ G   
Sbjct: 749  HQIHPVVSRLVAPIEGTSPARIADCLGLDPSGYRRSNVTTVVDEDDENNPDIGFSSGFSS 808

Query: 1316 RYRGC---EPLILSCP-SCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPE 1371
             +  C   E L ++CP +C      P    +   SV  K            T  CP C  
Sbjct: 809  -FTNCGDVESLYINCPRNCGGP---PIAIKTSAFSVVGK------------TWFCPTCSH 852

Query: 1372 EVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL------RLIGDA 1425
             +   + S  ++ N++  +A   +  Y  G M C+D  C   T SL+         IG++
Sbjct: 853  NLLLSQDSARLVTNRLVFEARRLIVHYQLGWMTCEDPACAVVTRSLHCPPSSGHHTIGES 912

Query: 1426 E----RGTVCPNYPRCNGRLVRK--YTEADLYKQLTYFCHLL 1461
            +    RG   P    C G+   K  Y+EA LY+QL +F +L+
Sbjct: 913  DGLWARGGR-PLCGVCGGQAALKSNYSEAKLYRQLCFFRYLV 953


>gi|339250812|ref|XP_003374391.1| DNA polymerase (Pol2) superfamily [Trichinella spiralis]
 gi|316969308|gb|EFV53426.1| DNA polymerase (Pol2) superfamily [Trichinella spiralis]
          Length = 1183

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 421/1255 (33%), Positives = 644/1255 (51%), Gaps = 166/1255 (13%)

Query: 320  LNCQESEFEVDDDGS---LPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVK 374
            +N + S+   +++G    + FY LDA E     + G +YLFGKV+     +  SCC++VK
Sbjct: 27   VNLKLSDISAEEEGGHQVVNFYYLDAVEA-GKKHPGIVYLFGKVQHLIQKSWISCCLIVK 85

Query: 375  NMQRCVYAIPNGPLFQTDEIMKLEKDAEE-----SRISPMAFRKKLQDVALGLKTEIANQ 429
            N+ R ++ +P     QT E  KLE   +E     +++    FR K+    L       N 
Sbjct: 86   NILRRIWILPRQTDLQTGEPFKLEDVHQELTELMNKLKIDEFRIKVTAFCL------FNA 139

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYP--------FKDPPLPADLKGEN 481
            LL       +V  V++++     +  A E   L++ Y         FK P L A+L G+ 
Sbjct: 140  LL-------LVKAVEKKFWLNSDQY-AQEAVYLELRYSVKNFLDCNFKYPALEANLTGKT 191

Query: 482  FCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSS 541
            F ++ GT SS LEL +++  +KGP  + IS   +  A QR +WC  E+ V+S   +    
Sbjct: 192  FQAIFGTTSSELELLILEMNIKGPRLMKISN-PTMAASQR-TWCAVELIVNSSNIV---- 245

Query: 542  SSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI----------DTPMLA 591
              ++V  +PP+ V AIN  T+ + +   NE  S   +      +          +T  L 
Sbjct: 246  -PENVNSLPPLRVLAINFLTMPDPKTHHNEAFSTFTLFIVMVGLLSNDNLDLNNETSALE 304

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
              W+      H  V+ K    +FP  F     D+        +   ++ERA+L+ ++ ++
Sbjct: 305  QRWR------HTCVIAKRPDLMFPSNFKSTLMDQKK----TTVVILNNERAILSAVLTKI 354

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
             K+D D++VGH +  F L   ++RA   +VP    S+I RLK     K            
Sbjct: 355  LKIDPDIIVGHELLDFHLFNFINRAVTLQVPYP--SRISRLKNVTQTK--------QKTQ 404

Query: 712  SPGIMSCI-AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE 770
            + G++  + AGR+LCD  + +++L+R   +SL ++A    N+  +E+ P  +   F +  
Sbjct: 405  TKGLLQQLTAGRMLCDAKVLAKELIRAKDFSLQEMALEIFNERIEEILPQTIKNYFNSST 464

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
            SLM L+     DA+L   +   L  L L  ++T   G +  KTL G RA+R EYLLLHAF
Sbjct: 465  SLMHLVVKVLADAFLCWRICEKLRCLQLAIEITRAVGGVLSKTLLGGRAERTEYLLLHAF 524

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
             A+ Y+ P+K ++  + K+             V  L +E+              G +  +
Sbjct: 525  DAQNYVYPEKVSHGGKQKVV------------VTSLDDEEIII-----------GSKKAS 561

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP--------DGLVPHL 942
            YAGGLVL+PKKGLYD+ +LLLDFNSLYPSIIQE+NICFTTV+ SP        D  +P +
Sbjct: 562  YAGGLVLDPKKGLYDRIVLLLDFNSLYPSIIQEFNICFTTVDLSPFTDPIKGSDEALPEI 621

Query: 943  PS-SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI-QQLDIQQQALKLTANSMYGCLGF 1000
            P   K  G+LP+ +K LV+ RR +K+ MK      + QQ  I+QQALK+TANS+YGCLGF
Sbjct: 622  PDPEKAAGILPKEIKRLVESRRQLKSLMKPGIPPDLFQQYHIRQQALKITANSVYGCLGF 681

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
            + SRFYAKPLA LIT +GREIL +T  L    L LEVIYGDTDSIMI+S +  I  A A+
Sbjct: 682  AASRFYAKPLAALITAKGREILTNT-KLAVEKLGLEVIYGDTDSIMINSNLTSIDDALAM 740

Query: 1061 AGKV-------IQEVNKKYKCLEI---DLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYEV 1109
              KV       I  V+    C+ +   D     + +   +KKKYAA+  + + DG     
Sbjct: 741  GKKVEKKKLGRIAVVHFSSTCVSLCFADQSRNEQTIQAARKKKYAALSCEKRPDGSWQFK 800

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
             E KGLD+VRRDWS ++ E G++ ++ ILS+ + ++    I   LMK+  D+R  +V L 
Sbjct: 801  KEVKGLDIVRRDWSPIAIEAGNYVINSILSDFTSDETAARIREYLMKLTSDVRQNKVVLG 860

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            K++I K L K P+ Y DAK QPHV VALR+ + G  +    GD +PY IC +Q  +    
Sbjct: 861  KFIIRKQLAKSPDEYQDAKGQPHVAVALRMNEKG--SHFRQGDVIPYAICLDQTNNQA-- 916

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
                QRA H +E+++G+ +  ID DYY +QQIHPVV+RLC  IE      LAD LGL  +
Sbjct: 917  ---MQRAYHFNEIQQGNMQ--IDFDYYLAQQIHPVVTRLCEPIESLDAACLADWLGLKSA 971

Query: 1290 KFQSK-----PSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCS--- 1341
             +  +     P+  +++  SS   F    +  Y   EP  + C  C    +   + S   
Sbjct: 972  SYAKQSNFTPPTTDLATVSSSCSFF----DHSYS--EPFTVPCVECGKIIEVTTLFSDME 1025

Query: 1342 SICMSVSEKPSKPETEYNFWRTLRCP--KCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
            +I +++S                +CP   C  +  + R     + + +++Q    V  YY
Sbjct: 1026 NIKLALS----------------KCPYGDCSFKPASNR---QYLVSLLRKQIHKHVHQYY 1066

Query: 1400 KGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCH 1459
             G  +CDD TC+Y +  + ++L  ++E   +CP  P  +G L+R+Y+E  LY QL ++  
Sbjct: 1067 LGWYVCDDSTCRYRSRYVVMKL--NSEGKLICPKCP--SGILIREYSEKKLYNQLCFYFT 1122

Query: 1460 LLDTQRGIEKMEISAKIPLEKELNKIR-PVVALAASTVQRIRERCAYGWVKLNDI 1513
            + D  + + ++   AK  L + L K+   V    A+    +    AYG + L  +
Sbjct: 1123 IFDFPQALMRLS-KAKKQLARLLPKMHLSVYETLATHACSVLNDNAYGTINLGAV 1176


>gi|365987994|ref|XP_003670828.1| hypothetical protein NDAI_0F02670 [Naumovozyma dairenensis CBS 421]
 gi|343769599|emb|CCD25585.1| hypothetical protein NDAI_0F02670 [Naumovozyma dairenensis CBS 421]
          Length = 1294

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 416/1200 (34%), Positives = 613/1200 (51%), Gaps = 145/1200 (12%)

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIP---NGPL 388
            GS  F+ LD  E        TL LFGK K    +  S  V +  + R +Y +P   N P 
Sbjct: 176  GSFQFFWLDFTEV-----NNTLVLFGKAKTLDGSFISAMVQINGLCRELYFLPRENNTP- 229

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
                     E+  EE  I P+   K                     + N    P K++YA
Sbjct: 230  ---------EEIHEE--IVPLLLEK-------------------YGLDNIRAKPEKKKYA 259

Query: 449  FGQAEIPAGENYVLKINYPFKDPP-----LPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            F   +IP   NY LK+  PF  P      +P DL  + F  + G +++  E F+V+ K+ 
Sbjct: 260  FELPDIPHEANY-LKVLMPFNTPKSSNDLIPPDLSSDTFSHVFGGNTNIFEAFVVQNKIM 318

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL I K     A Q  S C  E+ V+ P+++        +  +P +   +++L+T+ 
Sbjct: 319  GPCWLEI-KDGDFTALQNASHCSIEVAVNKPQNV----IPLDIKTIPDLKSISLSLQTMM 373

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
            N + +  EIVS ++   ++  +D+P+   E  KP   S  T++R   G  FP+G    A 
Sbjct: 374  NPKANKQEIVSITMSIFNRISLDSPI--PEGLKPD--SIITLLRPPQGTSFPLGL---AA 426

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
                K   N L   + E+ LL      +   D+DVL+GH +    LDVL+HR    ++P+
Sbjct: 427  LAKQKLNGN-LRLFNDEKTLLQCFCALMKVNDADVLIGHRLDSVYLDVLVHRIYDLKIPT 485

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPG----IMSCIAGRLLCDTFLCSRDLLREV- 738
              +S IGR  +   P+       FG G S      I    AGRLLCD      ++ + + 
Sbjct: 486  --FSTIGRRSKKTWPER------FGKGTSGMNHFYIRDLFAGRLLCD---IGNEMGQSLT 534

Query: 739  ----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL-IEYGETDAWLSMELMFHL 793
                S+ L+++ +   + + K +  +     +Q   +L+ + ++   T++ ++ E+ F +
Sbjct: 535  PKCQSWDLSEMYQVTCDGNHKPLDINYQNPQYQDDTNLLTMALQENITNSLITAEISFRI 594

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPDK T   + +  +QR
Sbjct: 595  QMLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFTRNGFIVPDKET--NKMRTQRQR 652

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
               G                  D    D     +   Y GGLV EP+KGL+  YIL++DF
Sbjct: 653  KQMG------------------DQQDGDAPVSSKKAKYQGGLVFEPEKGLHKNYILVMDF 694

Query: 914  NSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMK 970
            NSLYPSIIQEYNICFTTVER+ D +  +P +PSS    GVLP LL NLV RRR VK  MK
Sbjct: 695  NSLYPSIIQEYNICFTTVERNQDDIDELPEVPSSDIAQGVLPRLLANLVDRRREVKKIMK 754

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
            T +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L 
Sbjct: 755  TETDPHKKIQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLA 814

Query: 1030 QNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            ++ +NL V+YGDTDS+MI +G D  A A  I     + VN++YK LEID+D ++KR+LL 
Sbjct: 815  ES-MNLLVVYGDTDSVMIDTGCDTYADAIKIGNDFKKLVNERYKLLEIDIDNVFKRLLLH 873

Query: 1090 KKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
             KKKYAA+ V   KDG     +E KGLDM RR++  LSK+V    L+ ILS++  E  ++
Sbjct: 874  AKKKYAALNVTLNKDGSERLTLEVKGLDMKRREFCPLSKDVSTHVLNTILSDKDPEAALQ 933

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             I+  L  ++  M + ++ ++KY I   L+K P+AYP  KN P VQVAL+++++G     
Sbjct: 934  EIYGYLEDIRNKMENNEIRVDKYKINMKLSKDPQAYPGGKNMPAVQVALKMRKAGRVV-- 991

Query: 1209 SAGDTVPYIIC---CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
             AG  + ++I     E+G      +  A RA   +E+     K + D +YY  +QI   V
Sbjct: 992  KAGSVITFVITKGKQEEG-KEDEKLSPADRAFALNEVMVKSNKLIPDAEYYLEKQIFSPV 1050

Query: 1266 SRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSS--SLLFAVGDEERYRGCEPL 1323
             RL   IE     RL++ LGLD  K+  +     S++  +   L   + D ER++    L
Sbjct: 1051 ERLLERIESFDVVRLSEALGLDSKKYLRRNDNINSNNIDALQPLETTISDMERFKDATTL 1110

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNF-WRTLRCPKCPEEVEAGRISPGM 1382
             L CP+CSS F    +              P   Y   +  L+C  C E++     S   
Sbjct: 1111 DLHCPNCSSEFPFGGIV-------------PSNHYLMCYNGLQCKNC-EKI----FSTIQ 1152

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLV 1442
            + +Q++      +S+YY G ++CDD TC   T  +++        G  C N   C G + 
Sbjct: 1153 LTSQLESSIRSHISLYYAGWLICDDITCGNVTRQISV-------FGKRCLN-DGCTGVMR 1204

Query: 1443 RKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
             +YT+  LY QL YF  L D ++  +  EI    PL  E +   P   L  S+++ + E+
Sbjct: 1205 YRYTDKQLYNQLLYFDSLFDREKN-KNQEIK---PLYHEGDPDFPTEKLNDSSIRALSEQ 1260


>gi|341878909|gb|EGT34844.1| hypothetical protein CAEBREN_29139 [Caenorhabditis brenneri]
          Length = 1534

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 437/1249 (34%), Positives = 649/1249 (51%), Gaps = 153/1249 (12%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLF 389
            D  ++  Y +DA+E +  AN GT+YLFGKVK + ++  +C ++VKN+ R VY +P   + 
Sbjct: 360  DTNAIRMYWIDAYEDVHKAN-GTVYLFGKVKTSANSWGTCSIIVKNICRKVYFMPRSHVS 418

Query: 390  QTDE-------IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSP 442
            Q+           +  K  EE+ ++ +   K++ DV   LK +   Q     +   +   
Sbjct: 419  QSQSNITRKYSFFQNLKTGEETSLAEL--HKEIGDV---LKNKFHTQEFKCKM---VEKE 470

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDP---PLPADLKGENFCSLLGTHSSALELFLVK 499
            + R  +FG       +  ++++ YP        LP+DLKG++F     T  S LE  L++
Sbjct: 471  LIRDESFGNG--GGTKTPLMEVLYPVGKADKGKLPSDLKGDSFSHTFNTSVSPLERLLIE 528

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK--DIR---------VSSSSKHVAE 548
            +K  GP W+ +  +S   A  + S C+YE  VD  K  +IR         V +SS     
Sbjct: 529  KKFMGPGWIELYNYSDPKA--KTSNCQYEFEVDMEKMRNIRYLEGDDLEKVKNSSNSDLA 586

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKP----------- 597
            VP + + A+N+ T  N+++D NEI   S +   K  +  P    +  KP           
Sbjct: 587  VPKIKLLALNIVTTLNEKKD-NEICMISTLVNTKCDLIHPSSDRKDLKPKCCKFFIIRNF 645

Query: 598  GMLSHFTVVRKLDGGIFPMGFNKE-ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDS 656
               S F VV K  GG  P    K   +D+ SK    V     +E+ALL   +  + + + 
Sbjct: 646  SYTSIFPVVTKPSGGSLPYDIQKRLESDKISKFVKTV----PNEKALLTLFLAIINEEEP 701

Query: 657  DVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM 716
            D++VGH++S   + +L+ R +  ++P+  WS+I RLKRS    +  G+   G   S G  
Sbjct: 702  DIIVGHDLSAA-IALLVSRLEKLKLPN--WSRISRLKRS----INIGK--IGHSKS-GQW 751

Query: 717  SCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELI 776
               AGR+L D+ L + +L++  S+ L +L++  L   R+E+  +++  ++   + L+ LI
Sbjct: 752  ELTAGRMLLDSKLAAMELVKSRSFDLAELSQQILGITRREIYANEIPHLYLDSKDLISLI 811

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
             +   D  LS++++  L+ LPL  Q++ I G +  +T+ G RA+R EYLLLHAF     I
Sbjct: 812  NWSWNDLLLSLQIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLI 871

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
             PDK+   +  K  +Q                     DN     D +K  +   Y+GGLV
Sbjct: 872  APDKYNAFENKKKKEQGE-------------------DNAEGGGDEKKNGKA-QYSGGLV 911

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG----LVPHLPSSKTTGVLP 952
            LEPKKGLY+  ILLLDFNSLYPSIIQEYNIC+TT+E S D      VP   ++   GVLP
Sbjct: 912  LEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTLEYSKDSDEQLSVPQ--NTDIEGVLP 969

Query: 953  ELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
              ++ LV+ RR VKT MKT  +  K +Q+DI+Q ALKLTANSMYGCLGF  SRFYAKPLA
Sbjct: 970  REIRKLVECRRNVKTLMKTERNDAKRKQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLA 1029

Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
             L+T +GREIL  + DLV+  +   V+YGDTDSIMI++   D+  AK +  ++ + VNK 
Sbjct: 1030 ALVTAKGREILMHSKDLVE-KMGYSVVYGDTDSIMINTNSMDLVAAKKLGSEIKKAVNKC 1088

Query: 1072 YKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
            ++ LE+DLDG++KRMLLLKKKKYAA+ +        E  E KGLD+VRRDWS L+KE G 
Sbjct: 1089 HRLLELDLDGVFKRMLLLKKKKYAALTIN--PDTKVEAKELKGLDIVRRDWSQLAKETGT 1146

Query: 1132 FCLSQILSERSCED-VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
              + +IL      D ++ +I + L  +++ + SG V LE + I+K LT+ PE Y D K Q
Sbjct: 1147 AVVDKILDASLTRDEMISAIDDLLRDIRQKLDSGTVPLEMFQISKQLTRNPEQYSDVKAQ 1206

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             H  VA RL +SG        D V Y+I CE GT + ++    QRA H  E+   D K +
Sbjct: 1207 SHAAVAQRLNKSG-KFHLRHNDIVEYVI-CEDGTDNPAT----QRAYHRTEMT--DNKDL 1258

Query: 1251 -IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDP------ 1303
             ID+ YY +QQIHPVVSRL   IE T   R+A+CLGLD + ++   +   S         
Sbjct: 1259 KIDLLYYLAQQIHPVVSRLVEPIEETDAVRIAECLGLDSTNYRRAAAAQASQRAAEEDCA 1318

Query: 1304 --------SSSLLFAVGDEERYRGCEPLILSCPSCS--------STFDCPAVCSSICMSV 1347
                    S SL + V   + Y  CE +I+ CP            TFDC    +   +S+
Sbjct: 1319 WQQEVGFLSLSLRYLVYLFKNYDLCEGVIIVCPHAGCGHTNVIRETFDCVTDPTCPRLSI 1378

Query: 1348 SEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDD 1407
            S                 C KC    E+      +I NQ+ RQ   FVS ++     CD+
Sbjct: 1379 S----------------GCSKCEGRWESAE-DRAVIFNQIDRQLGEFVSRHHLAAFKCDE 1421

Query: 1408 ETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             TC++ T    ++       G  C    RC+ G L R+YT   L+ Q  +F  + D +  
Sbjct: 1422 PTCEFKTRVQTMKW---CREGLEC---IRCSTGVLRREYTTKQLFDQQMFFRQIFDVEAA 1475

Query: 1467 IEKM-EISAKIPLEKELNKIRPVVALAASTVQRIR----ERCAYGWVKL 1510
             +K+ E+  K    ++  + +  +  +   V+RI     ++ AY  V L
Sbjct: 1476 CKKLSELQRKTAENRDRPQFKAYIMDSMEFVERINVKYLQKNAYNRVDL 1524


>gi|157867365|ref|XP_001682237.1| putative DNA polymerase I alpha catalytic subunit [Leishmania major
            strain Friedlin]
 gi|68125689|emb|CAJ04158.1| putative DNA polymerase I alpha catalytic subunit [Leishmania major
            strain Friedlin]
          Length = 1339

 Score =  574 bits (1480), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 389/1040 (37%), Positives = 567/1040 (54%), Gaps = 147/1040 (14%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGKV   K G T + SCCV V+NM R V+ +P     Q
Sbjct: 243  FYWFDAREQPHTLSVDPGSLFLFGKVAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGSSQ 302

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 303  QDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
               +P  +    K+ YP + PPL A     +   ++G  SS LELFL+KRK+KGPS+L I
Sbjct: 334  VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPSFLRI 393

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S   +  +P R+S C  E +V+SPK++R   +      VPP T+ +I + T  + +   N
Sbjct: 394  SGLVA--SPNRISHCALEFSVESPKNLRAEDTK---LPVPPFTLASIQIHTQLDSKGACN 448

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE-ATDRNSKA 629
            EI+ ASV       I++            + H  +   +  G+ P   N     D  S  
Sbjct: 449  EILIASVAIYKDVNIES-----------TIRH--IPDSILTGVRPASMNTPLPIDLESYC 495

Query: 630  GSNVLCCE---SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             +  L      ++ERALL+    +L K+D+D+++GHN  GF LD+LL R Q   + S  W
Sbjct: 496  SAKGLPGVRRFANERALLDWFAQQLGKIDADMMIGHNFLGFTLDILLRRYQELNISS--W 553

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA
Sbjct: 554  STIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLA 608

Query: 747  KTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLT 799
                   + K      P   +    M      + +++      A LS  ++ HL V+ LT
Sbjct: 609  DQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLT 668

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            ++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K           
Sbjct: 669  KRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRG--------- 717

Query: 860  DRNVEELTNEDANFDNDTSHNDHRK-GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                               H+D  + GKR   Y GG+VL+PK GLY  YILLLDFNSLYP
Sbjct: 718  -------------------HDDEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYP 758

Query: 919  SIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQ 960
            S+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+LV 
Sbjct: 759  SLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVD 816

Query: 961  RRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
             RR VK  MKT   A+ L +  L+I+Q+ALKLTANSMYGCLGF  SRF+A+PLAEL+T+Q
Sbjct: 817  SRREVKRLMKTEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQ 874

Query: 1018 GREILRSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCL 1075
            GR  L+STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +  ++  ++NK+Y+ L
Sbjct: 875  GRLALQSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLELKAKINKRYQSL 934

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
            EID+DG+++ +LLLKKKKYAA+ V     +G  Y+  E KGLDMVRRDW  LSK V D  
Sbjct: 935  EIDIDGVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKSVCDSV 993

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            LS++L+    ED+++ + N +  V E +R+G+  L+ +VI+K+LTK PEAY    + PH 
Sbjct: 994  LSRVLNAEGSEDILDYVMNYMRDVAEQVRAGRYTLDNFVISKSLTKEPEAY-RGNSFPHA 1052

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
             VALR+KQ         GD +PY+IC        +   ++ +A H +E+++ + +  ID 
Sbjct: 1053 TVALRMKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQLRIDS 1101

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFA 1310
            ++Y S QI+P V RLC  I+G S  +L++ +G+     +K + + +ETM+    SSL  +
Sbjct: 1102 EWYLSVQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAETMNDFSHSSLFQS 1161

Query: 1311 VGDEERYRGCEPLILSCPSC 1330
               EE +    PL ++C  C
Sbjct: 1162 RNLEECFPAAVPLQVACTHC 1181


>gi|406606821|emb|CCH41857.1| DNA polymerase alpha subunit A [Wickerhamomyces ciferrii]
          Length = 1452

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 402/1171 (34%), Positives = 612/1171 (52%), Gaps = 137/1171 (11%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPL 388
            DD  S   Y LD  E        TL LFGKV        S  V VKN  R ++ +P    
Sbjct: 319  DDSKSFKMYWLDYTEV-----ENTLILFGKVLTTDKQLVSAMVQVKNFNRELFFLPR--- 370

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
                +   ++ +A +  ++P   R ++Q + L              +++       R+YA
Sbjct: 371  ----DYRLVDGEATDEAVTPSDVRDEIQPLILE----------QYGLTSLRTKEETRKYA 416

Query: 449  FGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            F    IP  ++Y LKI  PF+ P      LP+DL+GE F  + GT ++  E F+++R + 
Sbjct: 417  FEMPGIPKEKDY-LKILLPFQPPKNAKKTLPSDLEGETFSHVFGTSANIFETFVLQRNIM 475

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPK---DIRVSSSSKHVAEVPPVTVTAINLK 560
            GP WL I K ++    +  S CK E++V++P     I  S+   ++A  PP+T  +I+++
Sbjct: 476  GPCWLEI-KNANFDDVKNTSHCKLEVSVNNPNFVTPIEKSTPEFNIAP-PPLTSCSISVQ 533

Query: 561  TVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNK 620
            T+ N++++  E+++ ++        D P+   E  KP  L   T+ R +    FP G  K
Sbjct: 534  TMMNQKENRQEVIAVTLATYRNLPQDAPV--DENLKPNDL--ITLTRPI-AASFPPGL-K 587

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
               D+N       L   ++E+ LLN L   +   D DV +GH +    LD+LLHR    +
Sbjct: 588  AIADKNKLP----LRVFNNEKPLLNCLAALVKLADPDVFIGHRLENISLDILLHRMHDLK 643

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
            VP+  +S  GR +R + P  R G+    +  S  +    AGRLLCD       +  E+  
Sbjct: 644  VPT--FSTFGRRQRKQWPD-RFGKN--NANTSFLVKEIFAGRLLCD-------ISNEMGQ 691

Query: 741  SLTQLAKTQLNKDRKEVGPHDVL---------------KMFQTLESLMELIEYGETDAWL 785
            SLT   ++    D  E+  +DV+               +  +   SL  +++    ++ +
Sbjct: 692  SLTTKCQSW---DLPEM--YDVVCKKKHIPLEINWSNPQYTENANSLFMILKENCVNSLI 746

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            + E+ F + +L L++QLTN++GN W  TL G RA R E++LLH F    YIVPDK T  +
Sbjct: 747  TAEIAFRMQILSLSKQLTNLAGNAWAHTLGGTRAGRNEFILLHEFNRNDYIVPDKETRQQ 806

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                 +Q      ED N E+++N            +++K K    Y GGLV EP+KGL+ 
Sbjct: 807  RLAHQQQYQQQSSEDGNDEQVSN------------NNKKSK----YQGGLVFEPEKGLHK 850

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLKNLVQRR 962
             YIL++DFNSLYPSIIQE+NICFTTV+R  + +  +P +P + +  GVLP LL  LV RR
Sbjct: 851  NYILVMDFNSLYPSIIQEFNICFTTVDRDLNNIETLPDVPPTGSDQGVLPRLLSTLVNRR 910

Query: 963  RMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R VK  MK  TA+ ++  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GRE
Sbjct: 911  REVKKLMKDPTATMIEKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGRE 970

Query: 1021 ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            IL  T  L + +L L V+YGDTDS+MI +  DDI  A  I      +VN++Y+ LEID+D
Sbjct: 971  ILMDTRQLAE-SLGLRVVYGDTDSVMIDTNCDDIKDATKIGEDFKIKVNERYRLLEIDID 1029

Query: 1081 GLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
             ++KR+LL  KKKYAA+ V F K G    V+E KGLDM RR++  LSKE+  + L +ILS
Sbjct: 1030 NVFKRLLLHAKKKYAAMNVSFDKMGQENSVLEVKGLDMKRREYCPLSKEISIYVLEKILS 1089

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +   E  +  I++ L  +   +++ ++  +K+ I   L+K P +YP AKN P VQVALRL
Sbjct: 1090 DLDPELALNEIYSYLEDMTSKIKNNEIRADKFKINTKLSKDPSSYPGAKNMPAVQVALRL 1149

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            ++ G      AG  + ++I      + G     A+RAR   EL         D ++Y  +
Sbjct: 1150 REQG--KVIKAGSVITFVI------TEGEEGSPAERARALAELLPKTSTLKPDANHYLEK 1201

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL----FAVGDEE 1315
            QI   V RL   IEG    RLA  LGL+    Q       ++   + +L      + D E
Sbjct: 1202 QIFAPVERLLERIEGFDVVRLAKSLGLEHRSKQLSNRSNNTNGGINGILQPLESTISDAE 1261

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
            R++  + L L+C  C S F    + SS    ++            +  ++C KC  ++  
Sbjct: 1262 RFKLSKHLYLNC-KCGSHFKFGGIVSSNDYQMT------------FNGIQCKKCMNQLNT 1308

Query: 1376 GRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYP 1435
              ++     +Q++++   F+S YY+G+++CDD TC   T  +++        G  C +  
Sbjct: 1309 LNVT-----SQLEQRIRSFISKYYQGIVICDDSTCGMITKQISV-------YGKRCLSN- 1355

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             C G +  +Y++ +LY QL YF  L D ++ 
Sbjct: 1356 GCKGVMRYQYSDKELYNQLLYFDSLFDVEKN 1386



 Score = 41.2 bits (95), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 8/61 (13%)

Query: 53  IYDTVAEDEYDALVARRREE--ARGFIVDDDGLGYGDEGQEEDWSVAGLPS--SSDDESL 108
           IYD V ED+Y A   +RR++     F++DD+G GY D G +E W   G     SS+DE +
Sbjct: 31  IYDMVDEDDYRA---KRRDDLLKDDFVIDDNGEGYVDTGADE-WDGKGRHHYYSSEDEQM 86

Query: 109 D 109
           D
Sbjct: 87  D 87


>gi|320580849|gb|EFW95071.1| DNA-directed DNA polymerase alpha [Ogataea parapolymorpha DL-1]
          Length = 1421

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 470/1466 (32%), Positives = 704/1466 (48%), Gaps = 197/1466 (13%)

Query: 76   FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEK---------RGKKE 126
            FIVDD G GY + G + DW  A   +S D++  + ++  K  +I++         +G + 
Sbjct: 50   FIVDDSGNGYAETGAD-DWDGANEYASEDEDEPEIRQRKKIAKIKRDTPQISSFFKGAET 108

Query: 127  NNQNVRKPN------PSLTAAAAMMGKQRLSAMLT---STAMFKKSKDEKVKESESVIDE 177
             N+  RK +         TA A+   K R + M      T +F   K ++V+  + +  +
Sbjct: 109  ENKPKRKVDNLDDILSDFTAQAS--SKARSTPMFNVKKRTDVFSSLKSDRVRPVKPLDVK 166

Query: 178  VLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNST---NSVKENSDLINNFV 234
             L      E +   +R  +SS  + +   + + + S++ T S+    ++KE+ +      
Sbjct: 167  KLMF----EEEVPAKRVKLSSEDEIYAPESDISSASKIETPSSPIKAAIKEDEE------ 216

Query: 235  QIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKD 294
                           + SD+  ++T         ++V      ++KE K   A+I+T   
Sbjct: 217  ---------------FSSDDEIDVTTLKTARADVQRVNLSSTRELKEKKV--AEIATS-- 257

Query: 295  PLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTL 354
               S T    E S  N   +        +  E +V D  +L  + +D  E  +     +L
Sbjct: 258  ---SPTRDASETSMINSTFE--------KVDESQVADSETLQMFWMDYAEVDN-----SL 301

Query: 355  YLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRK 413
             LFGKVK     H  CVV V  + R +Y +P             E   +E    P     
Sbjct: 302  LLFGKVKTLDGRHVSCVVQVNGISREIYFLPR------------ESRLDEDDGPP----- 344

Query: 414  KLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP 472
                 A+ +  EI   LL+   +      P  +++AF    IP    Y LK+  PF+ P 
Sbjct: 345  ---PTAMDVHEEIIPLLLDKFGLDRIKAKPETKKWAFELENIPKETEY-LKVLLPFQTPK 400

Query: 473  -----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKY 527
                 LP+ L+GE F  + G +++  E F+V+R V GP WL I K +   A +  S C+ 
Sbjct: 401  SRNTVLPSTLEGETFRHVFGANANIFETFVVQRNVMGPCWLEI-KGADFSAIKNSSHCQV 459

Query: 528  EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
            E+ V  P  I+   ++      P +T  +IN++ V N ++   EI S S         DT
Sbjct: 460  EVAVADPAQIKPIETN---MPAPDLTALSINIQPVTNLKEGKQEIGSVSFAVYRNVHQDT 516

Query: 588  PMLASEWKKPGMLSHFTVVRKLDGGI-FPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
            PM   E   P  L   T+VR + G +  P G ++ A  RN       L   ++ER LLN 
Sbjct: 517  PM--PEDAVPDEL--LTLVRPVGGSLALPPGLSQLAAKRNVP-----LRSFNNERTLLNC 567

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
            L   + K D DV +GH +    LDVL+ R    ++  S WS  GR  R + P  R G+  
Sbjct: 568  LAAMIKKTDPDVFIGHRLDAAVLDVLMRRMHDLKI--SQWSTFGRRNRKQWPD-RYGK-- 622

Query: 707  FGSGASPG--IMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD------RKEVG 758
             GSG +    +    AGRL CD       +  E+  SLT   ++    +      +K+  
Sbjct: 623  -GSGRNNMFYLKEIFAGRLCCD-------IANEMGQSLTSKCQSWDLPEMYDIVCKKKFM 674

Query: 759  PHDV-LKMFQTLES---LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            P DV L   Q  E    L+           +  E+ F + +L L++QLTN++GN W  TL
Sbjct: 675  PMDVNLANPQFAEDANLLLAAFNENSMSVKIIAEVAFRVQILSLSKQLTNLAGNAWAHTL 734

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G RA R EY+LLH F    YIVPDK     ET+  +Q +        +E+  +E A   
Sbjct: 735  GGTRAGRNEYILLHEFTKNGYIVPDK-----ETRSQRQAAAAAAA---LEQDGDESAATS 786

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
            N  +            Y GGLV EP+KGL+  YIL++DFNSLYPSIIQE+NICFTTV RS
Sbjct: 787  NKKTK-----------YQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVNRS 835

Query: 935  P--DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKL 989
               D  +P++P S    GVLP LL+ LV RRR VK  +K   A+ ++  Q DI+QQALKL
Sbjct: 836  NLGDNDLPNVPPSDVAQGVLPRLLQQLVNRRREVKKLLKDPRATAVEKAQYDIKQQALKL 895

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L ++ + L V+YGDTDS+MI +
Sbjct: 896  TANSMYGCLGYVNSRFYAKPLAMLVTNRGREILMDTRQLAES-IGLRVVYGDTDSVMIDT 954

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYE 1108
            G D+   A  I      +VN++Y+ LEID+D ++KR+LL  KKKYAA+       G+   
Sbjct: 955  GSDNFQDAIKIGDDFKIKVNERYRLLEIDIDNVFKRLLLHSKKKYAAMNASMDASGLEKT 1014

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
            V+E KGLDM RR++  LSKE   F L +IL +   ED +  I+  L  V+  +   Q+ +
Sbjct: 1015 VLEVKGLDMRRREFCPLSKETSTFVLEKILGDADPEDALNEIYAHLEDVRNKLTDNQIPM 1074

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
             K  I   L+K PE YP  K+ P VQVALRL++ G      AG  + +++  ++G   G 
Sbjct: 1075 HKLTINTRLSKDPEQYPGGKSMPAVQVALRLRKQG--KLVRAGSVMTFVV-TDKGQDDGD 1131

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
            SV  A RAR   E+     ++  D  YY  +QI   + RL   IEG    R+A  LGLD 
Sbjct: 1132 SV--ADRARAISEILANPSQYRPDPYYYLEKQIFAPIERLLERIEGNDVVRMATALGLDA 1189

Query: 1289 SKFQSKPS--ETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMS 1346
             K++++    +   S     L   + D ER+R C+PL L C SC  +F+   + +S    
Sbjct: 1190 RKYEARARFVQDRVSAELQPLDSTISDSERFRDCKPLALRCTSCRVSFEFGGIQASKRYQ 1249

Query: 1347 VSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCD 1406
            V+            +  ++C  C        ++P  I++Q++      +S YY G ++CD
Sbjct: 1250 VT------------FSGVKCLSCQH-----VLAPLAISSQLEHFLRREISAYYAGWLVCD 1292

Query: 1407 DETCKYTTCSLNLRLIGDAERGTVCPNYPR--CNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
            D       C +  R +    R  +  N     C G +   Y +  LY QL Y   L D  
Sbjct: 1293 D-------CGVKTRQVSVYGRRCIGKNGKAYGCKGIMRYTYPDKQLYNQLLYIMSLFDVD 1345

Query: 1465 RGIEKM--EISAKIPLEKELNKIRPV 1488
            +  +++   ++A + +E + NK+ P+
Sbjct: 1346 KAKKRLLKPLTADLGVEDKENKLLPM 1371


>gi|146423101|ref|XP_001487483.1| hypothetical protein PGUG_00860 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1438

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 424/1201 (35%), Positives = 612/1201 (50%), Gaps = 137/1201 (11%)

Query: 353  TLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
            +L LFGKV  K G    S  V V  + R +Y +P        E  K+  D  E    P+ 
Sbjct: 314  SLLLFGKVLTKEGKLV-SGVVQVNGISRELYFLPR-------EFRKV--DGMEDTEQPVT 363

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
                  ++A  L ++   +++            K +YAF  + IP   +Y LKI  PFK 
Sbjct: 364  TDDVYHEIAPHLLSKFGLEMIR-------AKKEKMKYAFELSGIPRDTDY-LKILLPFKT 415

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            P      LP+DL+GE F  + GT++S  E F++++ + GP WL I K  +  A Q  S C
Sbjct: 416  PKSRNLVLPSDLEGETFRHVFGTNASIFESFVLQQNIMGPCWLDI-KGGNFEAIQNTSHC 474

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            + E+ VD+PK   V+  S ++A  P +TV+AI+++T  N +++  E+VS S+        
Sbjct: 475  QVEVAVDAPK--AVTPISGNLAP-PNLTVSAISVQTTMNVKENKQEVVSVSIATYRDLPQ 531

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D P+   + K+P  +   T+VR +     P G  K A     KA    L    +E+ LLN
Sbjct: 532  DAPI--DDKKQPDDM--VTLVRPVGSVNVPAGLEKLA-----KAQGLNLRILPNEKTLLN 582

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
             L   +  LD DV +GH +    LDVL+HR    +V  + WS  GR  R   P  + G++
Sbjct: 583  CLSAIVKNLDPDVYIGHRLENISLDVLVHRMYDLKV--TTWSTFGRRNRKVWPD-KFGKS 639

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
              G   +  I     GRLLCD       +  E+  SLT   ++    +  +V  H   K 
Sbjct: 640  S-GFSNNLHIREIFQGRLLCD-------IANEMGQSLTTKCQSWDLSEMLDVVCH---KK 688

Query: 766  FQTLESLMELIEYGETDAWLSM-------------ELMFHLSVLPLTRQLTNISGNLWGK 812
               LE       Y E  ++L M             E+ F + +L L++QLTNI+GN W  
Sbjct: 689  HTALEINFTNPRYAEDASFLLMALKENASNVKYTAEIAFAIQILSLSKQLTNIAGNAWSH 748

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL G RA R E++LLH F   KYIVPDK     E K  K  S    ++  VE       N
Sbjct: 749  TLSGTRAGRNEFILLHEFHRNKYIVPDK-----EDKFHKNSSYQ--QEAKVEN------N 795

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             D+ T+   ++K    P Y GGLV EP+KGL+  YIL++DFNSLYPSIIQEYNICFTTV+
Sbjct: 796  EDDSTTVTSNKK----PKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEYNICFTTVD 851

Query: 933  RSPDGL-------VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDI 982
            R    +       +P LP  ++  GVLP LL  LV RRR VK  +K      ++  Q DI
Sbjct: 852  RDDFNVSHDEEKDMPVLPDRESVQGVLPRLLNTLVSRRREVKKLLKDPKNSLVERAQYDI 911

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L + ++ L V+YGDT
Sbjct: 912  KQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAE-SIGLRVVYGDT 970

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF- 1101
            DS+MI +G+ D  +A  I  +    VN++YK LEID+D ++KR+LL  KKKYAA+     
Sbjct: 971  DSVMIDTGVTDFKEAIKIGEQFKLHVNERYKLLEIDIDNVFKRLLLHAKKKYAAMNASID 1030

Query: 1102 -KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
             K G    V+E KGLDM RR++  LSKE+  F L +IL++   E  +  +++ L K+   
Sbjct: 1031 RKTGEEKVVLEVKGLDMRRREYCQLSKEISTFILEKILADSDPEQALMDVYDYLEKMSAK 1090

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            ++SG++ + K+ I   L+K P  YP+ K  P V+VA+ L++SG      AG  + ++I  
Sbjct: 1091 IKSGEIPVNKFQINTRLSKDPNNYPNGKTMPPVRVAMLLRESG--KVIKAGTVITFVITA 1148

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             Q     SS   A RAR   ++ K D  +  D +YY  +QI   V RL   IEG    R+
Sbjct: 1149 PQTEDEKSSP--ADRARPIQDVLKKDSIYRPDPNYYLEKQIFAPVERLLERIEGIDMMRV 1206

Query: 1281 ADCLGLDPSKF--QSKPSETMSSD--PSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDC 1336
            A  L +D  K+  + + S+T + +  P  S    + D ER+R C  L+L C  C   F  
Sbjct: 1207 ASSLDIDTKKYVLRVRNSDTHAGEIVPLES---NISDVERFRQCSYLVLKC-KCGVNFRF 1262

Query: 1337 PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
              + +S    V+            +  + C KC       RI+   + N ++R     VS
Sbjct: 1263 GGIVASNDYKVT------------FNGICCNKCHYTFPTFRIA-AQLENMIRRH----VS 1305

Query: 1397 MYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQ 1453
            +YY G ++CDD  C  TT  +++   R IG +   T       C G +  KY++  LY Q
Sbjct: 1306 LYYAGWLVCDDGACGITTRQISVYGKRCIGASGTAT------GCKGVMRYKYSDRALYNQ 1359

Query: 1454 LTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            L YF  + D  +   K E+    P+    +K      LA+  ++ + E+    +V    I
Sbjct: 1360 LLYFSSIFDVDKA-RKTELK---PVFDAFDKGSEPAKLASGQIEALAEQNREHFVHFQGI 1415

Query: 1514 A 1514
             
Sbjct: 1416 V 1416


>gi|312377574|gb|EFR24380.1| hypothetical protein AND_11087 [Anopheles darlingi]
          Length = 1597

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 422/1227 (34%), Positives = 627/1227 (51%), Gaps = 166/1227 (13%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAG---STHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            + F+  DA    +    G LYLFG+V      + + S CV V+N+ RC++          
Sbjct: 410  MKFWFWDAWNDPNKCQ-GELYLFGRVAVAGKRNAYQSICVHVQNVDRCLF---------- 458

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFG 450
              ++  E+DA+  +   M          L +  E +N + N LN++ Y    V + +A+ 
Sbjct: 459  --LLAREQDAKTGQPVSM----------LEVYNEFSNDISNKLNIAKYRSRVVTKSFAYT 506

Query: 451  QA----EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
             A    ++P    Y L++ Y  K PP P D +      + GT+++ +E FL++RKVKGP 
Sbjct: 507  SATSSLQVPVSSEY-LEVRYSAKLPPPPLDRRYRTIAHIFGTNTNVVEQFLLERKVKGPC 565

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            W+ +    +     + SWCK E+TV     + V++ +   A  PP+ + +IN+++V   R
Sbjct: 566  WMELR--GATQRETKTSWCKLEVTVPDISCVTVATDAA-TASPPPLVLCSINVRSVL--R 620

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN-KEATDR 625
               NEI   +++   +  +  P     + K      +  V +    I+P+ FN  E   +
Sbjct: 621  NSTNEIAMITMLVNDQFSLSKPPPNPPFNK-----QYCGVTRPSNTIWPLNFNPDECKAK 675

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
             +K+         SER+LL+  +     LD D+++  +   F LD++  R    ++P  +
Sbjct: 676  VTKS--------ESERSLLSWFLSTFQLLDPDLVLTFDSYDFQLDLICQRLLATKMP--L 725

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            W++IGRLK               S AS  +     GR++CD    + +L+R  SY L  L
Sbjct: 726  WNRIGRLK-------------VKSPASKRVDDFFVGRMICDVKTSAEELIRSRSYDLNTL 772

Query: 746  AKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
                L     +RK+V   ++  M++  +SL++L+     D +  + LM  L+VLPL  Q+
Sbjct: 773  CVEVLKVQEGERKDVLLDEIPSMYEQADSLIQLVGLTMQDNFYILRLMCELNVLPLALQI 832

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            T I+GNL  +TL G RA+R E+LLLHAF  + YI+PDK         A    + G     
Sbjct: 833  TQIAGNLMNRTLHGGRAERNEFLLLHAFNERDYILPDK---------ANPFQSGG----- 878

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                        +     D RK K   AYAGGLVL+P KG YDK++LL+DFNSLYPSIIQ
Sbjct: 879  -----GPKGKGADGGDGADKRKPKNKAAYAGGLVLDPIKGFYDKFVLLMDFNSLYPSIIQ 933

Query: 923  EYNICFTTV----------------ERSPDGLV-PHLPSSKTTGVLPELLKNLVQRRRMV 965
            EYNICFTTV                + +P+ +  P + ++   G+LP  ++ LV+ RR V
Sbjct: 934  EYNICFTTVLPPVVGKELNDGQEEGQLNPELVAEPTILATNEIGILPRQIRKLVESRRAV 993

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  MK A  L  +   Q +I+Q ALKLTANS+YGCLG++ SRFYA+ LA LITQ+GREIL
Sbjct: 994  KQLMK-APDLTPELAMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHLASLITQKGREIL 1052

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             +T  +V+  +N +VIYGDTDSIMI++ I D  +   I   + Q VNK Y+CLE+D+DG+
Sbjct: 1053 LNTKSIVE-RMNYQVIYGDTDSIMINTNITDYEQVFKIGASIKQHVNKTYRCLELDVDGI 1111

Query: 1083 YKRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL-SE 1140
            YK +LLLKKKKYAAV +  K DG      E KGLD+VRRDWS ++   G   L QIL S+
Sbjct: 1112 YKYLLLLKKKKYAAVTISKKADGEIVCAQELKGLDIVRRDWSRVAVMAGKIILHQILSSD 1171

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
             S +D + +IH  L K+++D+++G ++L    ITK LT+    Y DA   PHVQVALR+ 
Sbjct: 1172 ASMDDRIGNIHVQLEKLKDDLQAGTLSLHLLEITKQLTRSLNEYGDAGQLPHVQVALRMN 1231

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG--KWMIDIDYYAS 1258
            +   +     GD V YIIC       G+S    +RA H DE++      K  +D++YY +
Sbjct: 1232 RQ-RNRNYKRGDMVNYIIC-----QDGTSAPAMKRAYHIDEVRDPANAEKLQVDVEYYLA 1285

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS-----SSLLFAVGD 1313
            QQIHPVV R+C  +EGT   RLA CLGLDP K+++  S     D +      SL+ +   
Sbjct: 1286 QQIHPVVFRICEPLEGTDACRLAICLGLDPIKYRTMLSAGSGGDHAVTEHGESLIKSA-- 1343

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEV 1373
             ERYR C     +C +C +      V S        +P       + +   RC    EE 
Sbjct: 1344 TERYRLCHRFEFTCVACKTK---NPVASGF------RPGANGRHRSVFE--RCAN--EEG 1390

Query: 1374 EAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGT 1429
                + P      I N++       +  +Y   M+CD+  C   T               
Sbjct: 1391 GGCAVLPVQYLPAIVNELTLAIRADIRRFYARWMVCDNPICNRNTRQY---------AHV 1441

Query: 1430 VCPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELN-K 1484
               N P C     G LV +Y+E DLY QL Y+ ++ D ++   KM         K L+  
Sbjct: 1442 ASKNLPYCLHCQKGLLVLQYSETDLYTQLCYYNYMFDLEQYSPKM--------TKVLSPD 1493

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLN 1511
            IR + A    T++R ++R  YG V L+
Sbjct: 1494 IRNMYAQLKDTIERFQQRSKYGVVNLS 1520



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 26/173 (15%)

Query: 11  RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
           R + R  +   R  ALERLK  +  G ++   V    ++EN +YD V E EY  +V +R 
Sbjct: 14  RSKRRRIDKGGRFAALERLKKTKEAGVKNKYEVN---EVEN-VYDEVDEREYAKIVNQRM 69

Query: 71  EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
            +   ++ DDDGLGY + G+E            D++ LD   S  K + + + +++  + 
Sbjct: 70  HD--DWVEDDDGLGYVENGRE----------IFDEDELDPLPSSNKGKGKGKDERKGTKR 117

Query: 131 VRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVK-ESESVIDEVLAEF 182
           VR  +P+   A  + G++ L         F + +  K K E +  + ++L E 
Sbjct: 118 VRDSDPT---AGPVTGRKSLK------NYFNREQASKAKVEDDDALADILGEI 161


>gi|68465455|ref|XP_723089.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
 gi|68465748|ref|XP_722942.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
 gi|46444950|gb|EAL04221.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
 gi|46445106|gb|EAL04376.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
          Length = 1470

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 389/1126 (34%), Positives = 583/1126 (51%), Gaps = 107/1126 (9%)

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP----LPADLKGENFCSL 485
            L N N+      P  ++YAF  A+IP    Y LK+  PF +      +PA+++G  F  +
Sbjct: 404  LANYNLEELRAKPEVKKYAFELADIPKEAEY-LKVLLPFNNETNRNIMPANIEGSTFRHV 462

Query: 486  LGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKH 545
             GT+++  E F+++R + GP WL I +     A Q  S C+ E+ VD P   ++S+  K 
Sbjct: 463  FGTNANMFESFIMQRNIMGPCWLEI-RGGDFDAMQNASHCQVEVVVDRPS--QISTIDKD 519

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
                P +TVTAI+++T+ N + +  E+VS S+        D P+  SE  KP  +  FT+
Sbjct: 520  APSSPNLTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDAPI--SEDIKPDDV--FTL 575

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
             R +    FP    + A     K G  +  C  SE+ LLN L  ++  LD DV +GH + 
Sbjct: 576  ARPVGSVSFPPRLQQLA----EKGGFQLRTC-PSEKVLLNALAAKIKSLDPDVFIGHRLE 630

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
               LDVL+HR     V +  WS +GR  R + P +           S  I     GRLLC
Sbjct: 631  NISLDVLVHRMNDNNVVT--WSALGRRNRRQWPYMINKSNS-SYNNSLLIRDVFQGRLLC 687

Query: 726  DTF--LCSRDLLREVSYSLTQLAKTQLNKDRKEVG-PHDVLKMFQTLESLMELIEYGETD 782
            D    +     ++  S+ L ++     +K    V   +  LK  +     +  ++  E +
Sbjct: 688  DIANEMGQSLTMKCQSWDLHEMYDVVCHKKHSPVEINYQNLKYAEDAHLFLMALKENELN 747

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
               + E+ F   +L L++QLTNI+GN W  TL G RA R EY+LLH F+   YIVPDK  
Sbjct: 748  VKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDK-- 805

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
               E K  K  S         +E   E+A  D  T+ ++ +     P Y GGLV EP+KG
Sbjct: 806  ---EDKTHKNTSYQ-------QEARVENAEEDATTATSNKK-----PKYQGGLVFEPEKG 850

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-------VPHLPSSKT-TGVLPEL 954
            L+  Y+L++DFNSLYPSIIQE+NICFTTV R    +       +P LP   T +GVLP L
Sbjct: 851  LHKNYVLVMDFNSLYPSIIQEFNICFTTVNRDRFNITHDENKDMPILPERDTESGVLPRL 910

Query: 955  LKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            L  LV RRR VK  +K       Q  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA 
Sbjct: 911  LNTLVSRRREVKKLLKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAM 970

Query: 1013 LITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            L+T +GREIL  T  L +++ +L V+YGDTDS+MI +G     +A  I  +   +VN++Y
Sbjct: 971  LVTNKGREILMDTRQLAESS-SLRVVYGDTDSVMIDTGASSYQEAIKIGEQFKVQVNERY 1029

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE--VIERKGLDMVRRDWSLLSKEVG 1130
            + LEID+D ++KR+LL  KKKYAA+          E   +E KGLDM RR++  LSK++ 
Sbjct: 1030 RLLEIDIDNVFKRLLLHAKKKYAAMNASINKATNEETATLEVKGLDMRRREYCQLSKDIS 1089

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
             F L++ILS+   E  +  +++ L  ++  +++ ++ ++KY I   L+K P++YP+ K+ 
Sbjct: 1090 TFVLTKILSDSDPETALLEVYDYLDDMKGKIQNNEIPIDKYKINTKLSKDPKSYPNGKSM 1149

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE-LKKGDGKW 1249
            P VQVALRL++ G      AG  + Y+I   +     S+V  A+RAR   E L K D   
Sbjct: 1150 PQVQVALRLREEG--KVIKAGSVITYVITAAKDDGDNSTV--AERARAIQELLSKKDPDL 1205

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL- 1308
              D +YY  +QI   V RL   IEG    R+A  LG+D  ++  +     +SD +  +L 
Sbjct: 1206 KPDANYYLEKQIFAPVERLLERIEGIDMVRVATSLGIDTKRYILR---VKNSDANGEILP 1262

Query: 1309 --FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
                + D+ER+R    L+L C  C S+F    + ++    V+            +  + C
Sbjct: 1263 IESNISDKERFRATSYLVLHC-KCGSSFRFGGIMAAETYKVT------------FNGVCC 1309

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIG 1423
             KC     A +++     +Q++      +++YY G ++CDD  C  TT  +++   R IG
Sbjct: 1310 TKCNYTFPAIKLT-----SQLESMIRKHIALYYAGWLVCDDPACGITTRQISVYGKRCIG 1364

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD---TQRG-----IEKMEIS-- 1473
            ++ R         C G +  +Y +  LY QL YF  + D   T+RG     ++ +E S  
Sbjct: 1365 NSGRAM------DCKGVMRYRYNDKQLYNQLLYFQSIFDVDKTKRGELRPLVDALEESKD 1418

Query: 1474 ---AKIP---LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                K+P   +E    + R +  +    VQ+    C   +V +  I
Sbjct: 1419 KQLPKLPSGQVEALAEQNRELFGICQEVVQKYLGECGRRYVNMGSI 1464



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 20  SARAEALERLKALRRGGRR----SGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
           SAR + L++LK  R+ GR       D+  YN      IYD V ED Y     R +     
Sbjct: 5   SARRKTLQQLKEARKTGRNVNVVESDTDDYN-----EIYDEVDEDTYRQH-KRNQLMNDD 58

Query: 76  FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
           FIVDD+G GY D G  +DW  A  P+   DE  +   S K+++ E +  K
Sbjct: 59  FIVDDNGEGYVDNGA-DDWDDASRPNYYSDEENESMGSRKRRKKEDKTTK 107


>gi|407863071|gb|EKG07865.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi]
          Length = 1335

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 385/1076 (35%), Positives = 573/1076 (53%), Gaps = 146/1076 (13%)

Query: 337  FYILDAHEQ-LSGANMGTLYLFGKV----KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            FY  DA EQ  + +  GT++LFGK     +   +  SCCV VKN+ RC + +P      T
Sbjct: 239  FYWFDAKEQPHTLSEPGTIFLFGKFYEKKREKLSFSSCCVHVKNVYRCTFLLPREGSSDT 298

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
            + I                  K++ DV    K  I  + +           V+R YAF +
Sbjct: 299  EII------------------KEINDVCQ--KHGIGERRIRF---------VERYYAFEE 329

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
              I   +N   K+ +P K P  P   + ++  +++G   S +ELFL+K+K+ GPS+LS+ 
Sbjct: 330  PGIRREKNRWAKLLFPGKYPGFPIMGEFKHIRAVMGASRSLIELFLIKKKLMGPSYLSME 389

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
             F   PA  R+S C+ E  VDSPK+I+V  +++     PP T+ +I L T  + +   NE
Sbjct: 390  NF--FPATDRLSHCELEFVVDSPKNIKVDDTAR---PSPPFTLASIQLHTQLDSKGVTNE 444

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG-GIFPMGFNKEATDRNSKAG 630
            +V+AS+       ID+ M      K  +   FT +R++      P+        +     
Sbjct: 445  VVAASIAVYRDVNIDSGM------KTEVSECFTGIRQISSDAALPLNLEAYCQSKGLPGV 498

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
             N      +ERALL  +   L  LD D++VGHN  G+ +D+LL+R     +P   WS IG
Sbjct: 499  KNF----GNERALLTWMASTLGNLDPDIVVGHNFIGYTIDILLNRYHELNIPR--WSTIG 552

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL----TQLA 746
            RL     P+ + G     S  S    +CI GRL+ DT+L SR+  +  +Y L    TQ+ 
Sbjct: 553  RLDIKRFPRSQNG----NSNLSNEKEACI-GRLVVDTYLLSREYYKSTNYKLESLATQMG 607

Query: 747  KTQLNKDRKEVGP------HDVLK----MFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
               +   R    P      +D++K    +F  L  L+         A LS+ ++  L  +
Sbjct: 608  VAGITDGRGSFEPGLTVLGNDIMKSSKDLFHVLLQLLNC-------AVLSVRVVAFLDAI 660

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT++LT ++GNLW +TL GAR++R+EYLLLHAF   K++ PDK       +   +R   
Sbjct: 661  PLTKRLTTLAGNLWSRTLYGARSERIEYLLLHAFHDLKFVTPDK------KRFDGKRGRQ 714

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
             +ED                         KR   Y GG+VLEPK GLY  YILLLDFNSL
Sbjct: 715  DLEDET-----------------------KRKTKYQGGMVLEPKSGLYSDYILLLDFNSL 751

Query: 917  YPSIIQEYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLV 959
            YPS+IQE+NIC+TT+ER  + +   +P        S    G         VLP++++ LV
Sbjct: 752  YPSLIQEFNICYTTIERDENTVSAEIPPPERLICTSCAAAGLPSPCSHKCVLPKVIRGLV 811

Query: 960  QRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
            + RR +K  MKT      +  L+I+Q++LKLTANSMYGCLGF +SRFYA+PLAEL+T+QG
Sbjct: 812  ESRREIKRLMKTEKDPSNLATLEIRQKSLKLTANSMYGCLGFEHSRFYAQPLAELVTRQG 871

Query: 1019 REILRSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLE 1076
            R  L++TV+L+ Q +  L VIYGDTDS+MI +GI DDI+K + +  ++  +VN++Y+ LE
Sbjct: 872  RIALQNTVELIPQISPLLRVIYGDTDSVMIQTGIKDDISKVRELGFEIKNKVNQRYQSLE 931

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            +D+DG+++ MLLLKKKKYAA+ V     DG  Y+  E KGLDMVRRDW  LS++V +  L
Sbjct: 932  LDIDGVFRAMLLLKKKKYAALSVVDWQSDGKTYKK-EVKGLDMVRRDWCPLSQKVSEAVL 990

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQ-VALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            S++L+  + ED+++ +   +  V + +R+G    LE +VI+K+LTK PE+Y      PH 
Sbjct: 991  SRVLNAEAGEDILDYVMTHMKTVADHVRAGNYYGLEDFVISKSLTKEPESY-RGTAFPHA 1049

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
             VALR+KQ         GD +PY+IC  +G        +  +A H DE+++  G   ID+
Sbjct: 1050 AVALRMKQR--KENVRVGDLIPYVIC--EGEH------LNDKAYHVDEVRRTKG-IRIDV 1098

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGLD-PSKFQSKPSETMSSDPSSSL-LFAV 1311
            ++Y S Q++P V RLC  I+G SPE+L++ +G+    + + +  ET+  D  S   LF  
Sbjct: 1099 EWYLSSQLYPPVMRLCEHIQGFSPEQLSEVMGVACHVRTEREIQETLIVDDFSHCSLFKS 1158

Query: 1312 GD-EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
             D  E +    PL + C  C              M  + K S P   +  +  + C
Sbjct: 1159 RDLSECFPTAVPLQVQCTRCHQVVPIDPHKYINDMFSASKNSFPNEPFELYNCVNC 1214


>gi|238880835|gb|EEQ44473.1| DNA polymerase alpha catalytic subunit [Candida albicans WO-1]
          Length = 1470

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 389/1126 (34%), Positives = 583/1126 (51%), Gaps = 107/1126 (9%)

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP----LPADLKGENFCSL 485
            L N N+      P  ++YAF  A+IP    Y LK+  PF +      +PA+++G  F  +
Sbjct: 404  LANYNLEELRAKPEVKKYAFELADIPKEAEY-LKVLLPFNNETNRNIMPANIEGSTFRHV 462

Query: 486  LGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKH 545
             GT+++  E F+++R + GP WL I +     A Q  S C+ E+ VD P   ++S+  K 
Sbjct: 463  FGTNANMFESFVMQRNIMGPCWLEI-RGGDFDAMQNASHCQVEVVVDRPS--QISTIDKD 519

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
                P +TVTAI+++T+ N + +  E+VS S+        D P+  SE  KP  +  FT+
Sbjct: 520  APSSPNLTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDAPI--SEDIKPDDV--FTL 575

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
             R +    FP    + A     K G  +  C  SE+ LLN L  ++  LD DV +GH + 
Sbjct: 576  ARPVGSVSFPPRLQQLA----EKGGFQLRTC-PSEKVLLNALAAKIKSLDPDVFIGHRLE 630

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
               LDVL+HR     V +  WS +GR  R + P +           S  I     GRLLC
Sbjct: 631  NISLDVLVHRMNDNNVVT--WSALGRRNRRQWPYMINKSNS-SYNNSLLIRDVFQGRLLC 687

Query: 726  DTF--LCSRDLLREVSYSLTQLAKTQLNKDRKEVG-PHDVLKMFQTLESLMELIEYGETD 782
            D    +     ++  S+ L ++     +K    V   +  LK  +     +  ++  E +
Sbjct: 688  DIANEMGQSLTMKCQSWDLHEMYDVVCHKKHSPVEINYQNLKYAEDAHLFLMALKENELN 747

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
               + E+ F   +L L++QLTNI+GN W  TL G RA R EY+LLH F+   YIVPDK  
Sbjct: 748  VKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDK-- 805

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
               E K  K  S         +E   E+A  D  T+ ++ +     P Y GGLV EP+KG
Sbjct: 806  ---EDKTHKNTSYQ-------QEARVENAEEDATTATSNKK-----PKYQGGLVFEPEKG 850

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-------VPHLPSSKT-TGVLPEL 954
            L+  Y+L++DFNSLYPSIIQE+NICFTTV R    +       +P LP   T +GVLP L
Sbjct: 851  LHKNYVLVMDFNSLYPSIIQEFNICFTTVNRDRFNVTHDENKDMPILPERDTESGVLPRL 910

Query: 955  LKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            L  LV RRR VK  +K       Q  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA 
Sbjct: 911  LNTLVSRRREVKKLLKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAM 970

Query: 1013 LITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            L+T +GREIL  T  L +++ +L V+YGDTDS+MI +G     +A  I  +   +VN++Y
Sbjct: 971  LVTNKGREILMDTRQLAESS-SLRVVYGDTDSVMIDTGASSYQEAIKIGEQFKVQVNERY 1029

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE--VIERKGLDMVRRDWSLLSKEVG 1130
            + LEID+D ++KR+LL  KKKYAA+          E   +E KGLDM RR++  LSK++ 
Sbjct: 1030 RLLEIDIDNVFKRLLLHAKKKYAAMNASINKATNEETATLEVKGLDMRRREYCQLSKDIS 1089

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
             F L++ILS+   E  +  +++ L  ++  +++ ++ ++KY I   L+K P++YP+ K+ 
Sbjct: 1090 TFVLTKILSDSDPETALLEVYDYLDDMKGKIQNNEIPIDKYKINTKLSKDPKSYPNGKSM 1149

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE-LKKGDGKW 1249
            P VQVALRL++ G      AG  + Y+I   +     S+V  A+RAR   E L K D   
Sbjct: 1150 PQVQVALRLREEG--KVIKAGSVITYVITAAKDDGDNSTV--AERARAIQELLSKKDPDL 1205

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL- 1308
              D +YY  +QI   V RL   IEG    R+A  LG+D  ++  +     +SD +  +L 
Sbjct: 1206 KPDANYYLEKQIFAPVERLLERIEGIDMVRVATSLGIDTKRYILR---VKNSDANGEILP 1262

Query: 1309 --FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
                + D+ER+R    L+L C  C S+F    + ++    V+            +  + C
Sbjct: 1263 IESNISDKERFRATSYLVLHC-KCGSSFRFGGIMAAETYKVT------------FNGVCC 1309

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIG 1423
             KC     A +++     +Q++      +++YY G ++CDD  C  TT  +++   R IG
Sbjct: 1310 TKCNYTFPAIKLT-----SQLESMIRKHIALYYAGWLVCDDPACGITTRQISVYGKRCIG 1364

Query: 1424 DAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD---TQRG-----IEKMEIS-- 1473
            ++ R         C G +  +Y +  LY QL YF  + D   T+RG     ++ +E S  
Sbjct: 1365 NSGRAM------DCKGVMRYRYNDKQLYNQLLYFQSIFDVDKTKRGELRPLVDALEESKD 1418

Query: 1474 ---AKIP---LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
                K+P   +E    + R +  +    VQ+    C   +V +  I
Sbjct: 1419 KQLPKLPSGQVEALAEQNRELFGICQEVVQKYLGECGRRYVNMGSI 1464



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 20  SARAEALERLKALRRGGRR----SGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
           SAR + L++LK  R+ GR       D+  YN      IYD V ED Y     R +     
Sbjct: 5   SARRKTLQQLKEARKTGRNVNVVESDTDDYN-----EIYDEVDEDTYRQH-KRNQLMNDD 58

Query: 76  FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
           FIVDD+G GY D G  +DW  A  P+   DE  +   S K+++ E +  K
Sbjct: 59  FIVDDNGEGYVDNGA-DDWDDASRPNYYSDEENESMGSRKRRKKEDKTTK 107


>gi|401418706|ref|XP_003873844.1| DNA polymerase I alpha catalytic subunit,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322490076|emb|CBZ25338.1| DNA polymerase I alpha catalytic subunit,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1340

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 390/1045 (37%), Positives = 574/1045 (54%), Gaps = 156/1045 (14%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGK+   K G T + SCCV V+NM R ++ +P     Q
Sbjct: 243  FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSIFVLPKAGSSQ 302

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 303  QDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
               +P  +    K+ YP + PPL A     +   ++G  SS LELFL+KRK+KGP++L I
Sbjct: 334  VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPNFLRI 393

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S   +  +  R+S C  E +V+SPK++RV  +      VPP T+ +I + T  + +   N
Sbjct: 394  SGLVA--SANRISHCALEFSVESPKNLRVEDTK---LPVPPFTLASIQIHTQLDSKGACN 448

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE-ATDRNSKA 629
            EI+ ASV       I+  +    +    +L+          G+ P   N     D  S  
Sbjct: 449  EILIASVAIYKDVNIENTI---RYIPDNILT----------GVRPASMNTPLPIDLESYC 495

Query: 630  GSNVLCCE---SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             +  L      ++ERALL+ L  +L K+D+D+++GHN  GF LD+LL R Q   + S  W
Sbjct: 496  NAKGLPGVRRFANERALLDWLAQQLGKVDADMMIGHNFLGFTLDILLRRYQELSISS--W 553

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIM----SCIAGRLLCDTFLCSRDLLREVSYSL 742
            S IGRL    +P+ +        G +P +     +CI GRL+ D++  SR+  + V+Y L
Sbjct: 554  STIGRLDLKRLPRFQ--------GTAPNVNQEKETCI-GRLVVDSYSLSREHYKTVNYRL 604

Query: 743  TQLA-KTQLN---KDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
              LA + QL    K      P   +    M      + +++      A LS  ++ HL V
Sbjct: 605  LSLADQMQLQGIAKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDV 664

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            + LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +    
Sbjct: 665  IRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGR---- 718

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                              D+D   +  RK K    Y GG+VL+PK GLY  YILLLDFNS
Sbjct: 719  ------------------DDDEEEDGKRKAK----YQGGMVLDPKCGLYSDYILLLDFNS 756

Query: 916  LYPSIIQEYNICFTTVERS---------PDGLV-----------PHLPSSKTTGVLPELL 955
            LYPS+IQE+NICFTTV+R          P+ L+           P L  S    VLP+++
Sbjct: 757  LYPSLIQEFNICFTTVDRENRSEIDVPPPENLICASCAAEGLSAPCLHKS----VLPKVI 812

Query: 956  KNLVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            K+LV  RR VK  MKT   A+ L +  L+I+Q+ALKLTANSMYGCLGF +SRF+A+PLAE
Sbjct: 813  KSLVDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANSMYGCLGFEHSRFHAQPLAE 870

Query: 1013 LITQQGREILRSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNK 1070
            L+T+QGR  L+STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +   +  ++NK
Sbjct: 871  LVTRQGRLALQSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINK 930

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            +Y+ LEID+DG+++ +LLLKKKKYAA+ V     +G  Y+  E KGLDMVRRDW  LSK 
Sbjct: 931  RYQSLEIDIDGVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKC 989

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V D  LS++L+    ED+++ + N +  V E +R+G+  L+ +VI+K+LTK PEAY    
Sbjct: 990  VCDAVLSRVLNAEGSEDILDYVMNYMRDVAEQVRAGRYTLDNFVISKSLTKEPEAY-RGN 1048

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
            + PH  VALR+KQ         GD +PY+IC        +   ++ +A H +E+++ + +
Sbjct: 1049 SFPHATVALRMKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQ 1097

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSS 1305
              ID ++Y S QI+P V RLC  I+G S  +L++ +G+     +K + + + TM+    S
Sbjct: 1098 LHIDSEWYLSVQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAGTMNDFSHS 1157

Query: 1306 SLLFAVGDEERYRGCEPLILSCPSC 1330
            SL  +   EE +    PL ++C  C
Sbjct: 1158 SLFQSRNLEECFPAALPLQVACTHC 1182


>gi|354545340|emb|CCE42068.1| hypothetical protein CPAR2_806170 [Candida parapsilosis]
          Length = 1454

 Score =  568 bits (1463), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 466/1526 (30%), Positives = 726/1526 (47%), Gaps = 226/1526 (14%)

Query: 20   SARAEALERLKALRRGGRRSGDSVGYNIKLE---NPIYDTVAEDEYDALVARRREEAR-- 74
            S +A   E+LK L+   R++G  V  +   E   N IYD V E+ +       RE  R  
Sbjct: 2    STKAAKREKLKLLKEA-RKTGGRVLLDSDDETNLNEIYDEVDEETF-------REHKRHQ 53

Query: 75   ----GFIVDDDGLGYGDEGQEEDWSVAGLPSS-SDDESLDGQRSIKKQRIEKRGKKENNQ 129
                 FIVDD+G GY D G +E W  +  P+  SD++ +D  +  +K++ E+R  K    
Sbjct: 54   LMNDDFIVDDNGEGYVDNGADE-WDDSSRPNYYSDEDDVDSNKRKRKKKDEQRPIK---- 108

Query: 130  NVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADR 189
             V K  P             ++    ST +    +  +VK+ +  ID++L  F     D 
Sbjct: 109  -VAKTAP-------------INNFFKSTTI----RTNEVKKVDMNIDDILEGFQ----DV 146

Query: 190  ERRRRSVS---SNIKSFVSVNSVKTNSQLVTNSTN---------SVKENSDLINNFVQIQ 237
             +++ +V+   +N K  V +   K N+    ++ N         +   +SD   +F +++
Sbjct: 147  PQKKVNVAKSFANFKKSVPIKKRKPNTSFTFSTINKERKSPSVEAFNASSDYTMDFEEVE 206

Query: 238  N---------CDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKL--- 285
                       D V+E + +   S    E+       E K    D  ++DV   K+    
Sbjct: 207  QPSSPVTTIASDAVQEKENVDPASSPRKEVKSEKTLPESKLDESDS-DDDVIFAKRPKTS 265

Query: 286  -------NAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFY 338
                    A IS+ K   +S++   +  +      D+    ++ Q+   E    GS   +
Sbjct: 266  GVKREHNTATISSVKAGAISSSPPRQPYTAFANHTDK----IDEQDVNSET---GSFRMF 318

Query: 339  ILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIP-------NGPLFQ 390
             +D  E        +L LFGK++      +  VV +  + R +Y +P           F 
Sbjct: 319  WMDYAEV-----ENSLLLFGKIQTKDGKLASGVVQINGLCRELYILPKEKQSNSGNQRFS 373

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
            TD+++          I+P+                      N  + +    P  ++YAF 
Sbjct: 374  TDDVL--------DEITPIFME-------------------NYKLESLRAKPETKKYAFE 406

Query: 451  QAEIPAGENYVLKINYPFKDPP----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
             A IP    Y LK+  P+        LPAD +GE F  + GT+++  E F+ +R + GP 
Sbjct: 407  LAYIPKEAEY-LKVLLPYNTVTNRKVLPADTEGETFSHIFGTNANMFESFVTQRGIMGPC 465

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I       A +  S C+ E+ + SP  I V   +   A  P +T T+I++ TV N +
Sbjct: 466  WLEIQG-GDFDAIRNSSHCQIEVAIASPGKISVVDKAPPAA--PDLTCTSISVLTVMNPK 522

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
            Q+  E+VS SV   +    D P+   E  KP  +   T  R +    FP G  + A    
Sbjct: 523  QNKQEVVSVSVATYYNLPQDAPI--PEDLKPDDV--ITYARPVGAVSFPPGMAQLA---- 574

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
             K    +  C  +E+ LLN +  ++  +D D+ +GH +    LDVL+HR    +V  + W
Sbjct: 575  KKEMFELRMC-PNEKVLLNAVAAKIKTVDPDIFIGHRLENISLDVLVHRMHDNQV--TTW 631

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
            S +GR  R + P+        GSG +  ++      GRLLCD       +  E+  SLT 
Sbjct: 632  SALGRRNRKQWPQ---SINKHGSGFNNNLLIREVFRGRLLCD-------IANEMGQSLTM 681

Query: 745  LAKTQLNKDRKEV---GPHDVLKM-FQTLES------LMELIEYGETDAWLSMELMFHLS 794
              ++    +  +V     H+ L + FQ  +        M  ++  E +  ++ E+ F   
Sbjct: 682  KCQSWDLVEMYDVVCHKKHNALDINFQNAKFSEDATLFMLALKENEINVKIASEVAFATQ 741

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            +L L++QLTNI+GN W  TL G RA R EY+LLH FR   YIVPDK     +    +Q +
Sbjct: 742  ILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFRRNNYIVPDKEDSTHKNTSFQQEA 801

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                      +L N + +    TS+       + P Y GGLV EP+KGL+  YIL++DFN
Sbjct: 802  ----------QLENAEEDVQTATSN-------KKPKYQGGLVFEPEKGLHKNYILVMDFN 844

Query: 915  SLYPSIIQEYNICFTTVER-------SPDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVK 966
            SLYPSIIQEYNICFTTV+R       + D  +P +P + +  GVLP LL +LV RRR VK
Sbjct: 845  SLYPSIIQEYNICFTTVDRDRFNTTHNEDKDMPLIPDNDSERGVLPRLLNSLVTRRREVK 904

Query: 967  TWMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              +K       Q  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  
Sbjct: 905  KLLKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMD 964

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T  L +++ +L V+YGDTDS+MI +G      A  +  +   +VN++YK LEID+D ++K
Sbjct: 965  TRQLAESS-SLRVVYGDTDSVMIDTGAQTYKDAIKVGDEFKVQVNERYKMLEIDIDNVFK 1023

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEV--IERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            R+LL  KKKYAA+ V        EV  +E KGLDM RR++  LSK++  F L +ILS+  
Sbjct: 1024 RLLLHAKKKYAAMNVSINKVTGEEVTTLEVKGLDMRRREYCQLSKDISTFVLMKILSDAD 1083

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             E+ ++ ++  L ++++ +   ++ ++++ I   L+K P  YP+ K+ P VQVALRLK  
Sbjct: 1084 PEEALQDVYTFLEEMRDKILGNEMPVDRFKINTKLSKDPNNYPNGKSMPQVQVALRLKNE 1143

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G      AG  + Y++      +  S+V  A+RAR   EL         D  +Y  +QI 
Sbjct: 1144 G--KVVKAGSVISYVVTAPTDENDKSTV--AERARAIQELLSKKLNLKPDPMFYLEKQIF 1199

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
              V RL   IE     R+A  LG+D  ++  K      +   +S+   + D+ER+R    
Sbjct: 1200 APVERLLDKIESVDMMRVATSLGVDTKRYILKVKNEGFNGEITSIESNISDQERFRQSSY 1259

Query: 1323 LILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM 1382
            L+L C +C   F    + +S    V+            +  + C KC       +++  +
Sbjct: 1260 LVLKC-NCGHVFRYGGIQASNDYKVT------------FNGVTCKKCDYTFPTIKLTAQL 1306

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNG 1439
             A   K      +++YY G ++CDD +C   T  +++   R IG + +G        C G
Sbjct: 1307 EATIRKH-----IALYYCGWLVCDDNSCGIETRQISVYGKRCIGASGKGL------DCRG 1355

Query: 1440 RLVRKYTEADLYKQLTYFCHLLDTQR 1465
             +  +YT+  LY QL YF  + D ++
Sbjct: 1356 VMRYRYTDKALYNQLLYFNSIFDVEK 1381


>gi|71661998|ref|XP_818012.1| DNA polymerase I alpha catalytic subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70883238|gb|EAN96161.1| DNA polymerase I alpha catalytic subunit, putative [Trypanosoma
            cruzi]
          Length = 1335

 Score =  568 bits (1463), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 388/1109 (34%), Positives = 583/1109 (52%), Gaps = 154/1109 (13%)

Query: 337  FYILDAHEQ-LSGANMGTLYLFGKV----KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            FY  DA EQ  + +  GT++LFGK     +   +  SCCV VKN+ RC + +P      T
Sbjct: 239  FYWFDAKEQPHTLSEPGTIFLFGKFYEKKREKVSFSSCCVRVKNVYRCTFLLPREGSSDT 298

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
            + I                  K++ DV    K  I  + +           V+R YAF +
Sbjct: 299  EII------------------KEINDVCQ--KHGIGERRIRF---------VERYYAFEE 329

Query: 452  AEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSIS 511
              I   +N   K+ +P K P  P   + ++  +++G   S +ELFL+K+K+ GPS+LS+ 
Sbjct: 330  PGIRREKNRWAKLRFPGKYPGFPIMGEFKHIRAVMGASRSLIELFLIKKKLMGPSYLSME 389

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
             F   PA +R+S C+ E  VDSPK+I+V  +++     P  T+ +I L T  + +   NE
Sbjct: 390  NF--FPATERLSHCELEFVVDSPKNIKVDDTAR---PSPLFTLASIQLHTQLDSKGVTNE 444

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG-GIFPMGFNKEATDRNSKAG 630
            +V+AS+       ID+ M      K  +   FT +R++      P+        +     
Sbjct: 445  VVAASIAVYRDVNIDSGM------KTEVSECFTGIRQISSVAALPLNLEAYCQSKGLPGV 498

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
             N      +ERALL  +   L  LD D++VGHN  G+ +D+LL+R     +P   WS IG
Sbjct: 499  KNF----GNERALLTWMASTLGNLDPDIVVGHNFIGYTIDILLNRYHELNIPR--WSTIG 552

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL----TQLA 746
            RL     P+ + G     S  S    +CI GRL+ DT+L SR+  +  +Y L    TQ+ 
Sbjct: 553  RLDIKRFPRSQNG----NSNLSNEKEACI-GRLVVDTYLLSREYYKSTNYKLESLATQMG 607

Query: 747  KTQLNKDRKEVGP------HDVLK----MFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
               +   R    P      +D++K    +F  L  L+         A LS+ ++  L  +
Sbjct: 608  VAGITDGRGSFEPGLTVLGNDIMKSSKDLFHVLLQLLNC-------AVLSVRVVAFLDAI 660

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT++LT ++GNLW +TL GAR++R+EYLLLHAF   K++ PDK       +   +R   
Sbjct: 661  PLTKRLTTLAGNLWSRTLYGARSERIEYLLLHAFHDLKFVTPDK------KRFDGKRGRQ 714

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
             +ED                         KR   Y GG+VLEPK GLY  YILLLDFNSL
Sbjct: 715  DLEDET-----------------------KRKTKYQGGMVLEPKSGLYSDYILLLDFNSL 751

Query: 917  YPSIIQEYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLV 959
            YPS+IQE+NIC+TT+ER  + +   +P        S    G         VLP++++ LV
Sbjct: 752  YPSLIQEFNICYTTIERDENTVSAEIPPPERLICTSCAAAGLPSPCSHKCVLPKVIRGLV 811

Query: 960  QRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
            + RR +K  MKT      +  L+I+Q++LKLTANSMYGCLGF +SRFYA+PLAEL+T+QG
Sbjct: 812  ESRREIKRLMKTEKDPNNLATLEIRQRSLKLTANSMYGCLGFEHSRFYAQPLAELVTRQG 871

Query: 1019 REILRSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLE 1076
            R  L++TV+L+ Q +  L VIYGDTDS+MI +GI DDI K + +  ++  +VN++Y+ LE
Sbjct: 872  RIALQNTVELIPQISPLLRVIYGDTDSVMIQTGIKDDIRKVRELGFEIKNKVNQRYQSLE 931

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            +D+DG+++ MLLLKKKKYAA+ V     DG  Y+  E KGLDMVRRDW  LS++V +  L
Sbjct: 932  LDIDGVFRAMLLLKKKKYAALSVVDWQNDGKTYKK-EVKGLDMVRRDWCPLSQKVSEAVL 990

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQ-VALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            S++L+  + ED+++ +   +  V + +R+G    LE +VI+K+LTK PE+Y      PH 
Sbjct: 991  SRVLNAEAGEDILDYVMTHMKTVSDHVRAGNYYGLEDFVISKSLTKEPESY-RGTAFPHA 1049

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
             VALR+KQ         GD +PY+IC  +G        +  +A H DE+++  G   ID+
Sbjct: 1050 AVALRMKQR--KENVRVGDLIPYVIC--EGEH------LNDKAYHVDEVRRTKG-IRIDV 1098

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGLD-PSKFQSKPSETMSSDPSSSL-LFAV 1311
            ++Y S Q++P V RLC  I+G SPE+L++ +G+    + + +  ET+  D  S   LF  
Sbjct: 1099 EWYLSSQLYPPVMRLCEHIQGFSPEQLSEAMGVACHVRTEREIQETLIVDDFSHCSLFKS 1158

Query: 1312 GD-EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCP 1370
             D  E +    PL + C  C              M  + K S P   +  +  + C +  
Sbjct: 1159 RDLSECFPTAVPLQVQCTRCHQVVPIDPHKYINDMFSASKTSFPNEPFELYNCVNCGQS- 1217

Query: 1371 EEVEAGRISPGMIANQVKRQADGFVSMYY 1399
                   +S   +AN + +     +  +Y
Sbjct: 1218 -------LSVTYLANCLTQMCHKIIQQFY 1239


>gi|241953235|ref|XP_002419339.1| DNA polymeras I subunit A, putative; DNA polymerase alpha catalytic
            subunit A, putative; catalytic subunit of the DNA
            polymerase I alpha-primase complex, putative [Candida
            dubliniensis CD36]
 gi|223642679|emb|CAX42933.1| DNA polymeras I subunit A, putative [Candida dubliniensis CD36]
          Length = 1531

 Score =  567 bits (1461), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 404/1206 (33%), Positives = 609/1206 (50%), Gaps = 123/1206 (10%)

Query: 352  GTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L LFGK+          VV V  + R ++ +P       DE  K +K A         
Sbjct: 399  NSLLLFGKIMTKEGKLVSGVVKVDGICRELFFLPREYRIVDDEEDKTKKLA--------- 449

Query: 411  FRKKLQDVALGLKTEIANQLL-NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
                    A+ +  EI   LL N  +      P  ++YAF  A+IP    Y LK+  PF 
Sbjct: 450  --------AIDVLEEIQPLLLANYKLEELRAKPEVKKYAFELADIPKEAEY-LKVLLPFN 500

Query: 470  DPP----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            +      +PA+++G  F  + GT+++  E F+++R + GP WL I +     A Q VS C
Sbjct: 501  NETNRNIMPANIEGSTFRHVFGTNANMFESFVMQRNIMGPCWLEI-RGGDFDAMQNVSHC 559

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            + E+ V+ P  I  S+  K     P +TVTAI+++TV N + +  E+VS S+    +   
Sbjct: 560  QVEVVVNRPSQI--STIDKDAPASPNLTVTAISMQTVLNPKSNKQEVVSVSLATYFELPQ 617

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D P+  SE  KP  +  FT+ R +    FP    + A     K G  +  C  SE+ LLN
Sbjct: 618  DAPI--SEDIKPDDV--FTLARPVGAVSFPPRLQQLA----DKGGFQLRTC-PSEKVLLN 668

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
             L  ++  LD DV +GH +    LDVL+HR     V +  WS +GR  R + P +     
Sbjct: 669  ALAAKIKTLDPDVFIGHRLENISLDVLVHRMNDNNVVT--WSALGRRNRKKWPYMINKSN 726

Query: 706  IFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQLNKDRKEVG-PHDV 762
                  S  I     GRLLCD    +     ++  S+ L ++     +K    V   +  
Sbjct: 727  S-SYNNSLLIRDVFQGRLLCDIANEMGQSLTMKCQSWDLHEMYDVVCHKKHAPVEINYQN 785

Query: 763  LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
            LK  +     +  ++  E +   + E+ F   +L L++QLTNI+GN W  TL G RA R 
Sbjct: 786  LKYAEDAHLFLMALKENELNVKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRN 845

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            EY+LLH F+   YIVPDK     E K  K  S         +E   E+A  D  T+ ++ 
Sbjct: 846  EYILLHEFKRNNYIVPDK-----EDKTHKNTSYQ-------QEARVENAEEDATTATSNK 893

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL---- 938
            +     P Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV R    +    
Sbjct: 894  K-----PKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVNRDRFNVTHDE 948

Query: 939  ---VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLTAN 992
               +P LP   T +GVLP LL  LV RRR VK  +K       Q  Q DI+QQALKLTAN
Sbjct: 949  NKDMPVLPERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYDIKQQALKLTAN 1008

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGID 1052
            SMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L +++ +L V+YGDTDS+MI +G +
Sbjct: 1009 SMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESS-SLRVVYGDTDSVMIDTGAN 1067

Query: 1053 DIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE--VI 1110
               +A  I  +   +VN++Y+ LEID+D ++KR+LL  KKKYAA+          E   +
Sbjct: 1068 SYKEAIKIGEQFKAQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNASINKATNEETATL 1127

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            E KGLDM RR++  LSK++  F L++ILS+   E  +  +++ L +++  +++ ++ ++K
Sbjct: 1128 EVKGLDMRRREYCQLSKDISTFVLTKILSDSDPETALLEVYDYLDEMKTKVQNNEIPIDK 1187

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
            Y I   L+K P++YP+ K  P VQVALRL++ G      AG  + Y+I   +    G S 
Sbjct: 1188 YKINTKLSKDPKSYPNGKTMPQVQVALRLREEG--KVIKAGSVITYVITAAR--DDGDSS 1243

Query: 1231 GIAQRARHPDE-LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPS 1289
             +A+RAR   E L K D     D +YY  +QI   V RL   IEG    R+A  LG+D  
Sbjct: 1244 TVAERARAIQELLSKKDPNLKPDANYYLEKQIFAPVERLLERIEGIDMVRVATSLGIDTK 1303

Query: 1290 KFQSKPSETMSSDPSSSLL---FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMS 1346
            ++  +   +     +  +L     + DEER+R    L+L C  C ++F    + ++    
Sbjct: 1304 RYILRVKNSEGGGANGEILPIESNISDEERFRATSYLVLHC-KCGTSFRFGGIMAAETYK 1362

Query: 1347 VSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCD 1406
            V+            +  + C +C     A +++     +Q++      +++YY G ++CD
Sbjct: 1363 VT------------FNGVCCSQCNYTFPAIKLT-----SQLESMIRKHIALYYAGWLVCD 1405

Query: 1407 DETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD- 1462
            D  C   T  +++   R IG++ R         C G +  +Y +  LY QL YF  + D 
Sbjct: 1406 DPACGIVTRQISVYGKRCIGNSGRAM------DCKGVMRYRYNDKQLYNQLLYFQSIFDV 1459

Query: 1463 --TQRG-----IEKMEIS-----AKIP---LEKELNKIRPVVALAASTVQRIRERCAYGW 1507
              T+RG     ++ +E S      K+P   +E    + R +  +    +Q+    C   +
Sbjct: 1460 EKTKRGQLRPLVDALEESKDKQLPKLPSGQVEALAEQNRELFGVCQEVIQKYLGECGRRY 1519

Query: 1508 VKLNDI 1513
            V +  I
Sbjct: 1520 VNMGSI 1525



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 20  SARAEALERLKALRRGGRR----SGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG 75
           SAR + L++LK  RR GR       D+  YN      IYD V ED Y     R +     
Sbjct: 65  SARRKTLQQLKEARRTGRNVNVIESDTDDYN-----EIYDEVDEDTYRQH-KRNQLMNDD 118

Query: 76  FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
           FIVDD+G GY D G  +DW  A  P+   DE  +   S K+++ E +  K
Sbjct: 119 FIVDDNGEGYVDNGA-DDWDDASRPNYYSDEENESMGSRKRRKKEDKTSK 167


>gi|355712599|gb|AES04402.1| polymerase , alpha 1, catalytic subunit [Mustela putorius furo]
          Length = 716

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 327/713 (45%), Positives = 446/713 (62%), Gaps = 55/713 (7%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER LL   + +++K+D D++VGHNI GF+L+VLL R  VC+VP   WSKIGRLKRS M
Sbjct: 3    ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKRSNM 60

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PKL  GR  FG        +   GR++CD  + +++L+R  SY L++L +  L  +R E+
Sbjct: 61   PKL-GGRGGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTERFEI 113

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
               +V  M+     L+ L+EY   DA   +++M  L+VLPL  Q+TNI+GN+  +TL G 
Sbjct: 114  PMENVRNMYSESSHLLYLLEYTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGG 173

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            R++R E+LLLHAF    YIVPDK  + K  +                           D 
Sbjct: 174  RSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDED------------------IDG 215

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
              N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R    
Sbjct: 216  DANKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 275

Query: 934  ----SPDG---LVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQ 983
                + DG    +P LP      G+LP  ++ LV+RR+ VK  MK    +   + Q DI+
Sbjct: 276  AQKITEDGEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIR 335

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL  T ++VQ  +NLEVIYGDTD
Sbjct: 336  QKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ-KMNLEVIYGDTD 394

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FK 1102
            SIMI++   D+ +   +  KV  EVNK YK LEID+DG++K +LLLKKKKY A+ V+   
Sbjct: 395  SIMINTNSTDLEEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTS 454

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG      E KGLD+VRRDW  L+KE G+F + QILS++S + +VE+I   L+++ E++ 
Sbjct: 455  DGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGENVL 514

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            +G V + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGDTV Y+IC   
Sbjct: 515  NGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQG-GRKVKAGDTVSYVIC--- 570

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
                GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I+G     +A 
Sbjct: 571  --QDGSNLAAGQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIAT 627

Query: 1283 CLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSS 1332
             LGLDP++F  +       + + +LL     + DEE+YR CE     CP+C +
Sbjct: 628  WLGLDPTQF--RVHHYHKDEENDALLGGPAQLTDEEKYRDCEKFKCPCPTCGT 678


>gi|392896659|ref|NP_001255109.1| Protein Y47D3A.29, isoform a [Caenorhabditis elegans]
 gi|25005148|emb|CAB97239.2| Protein Y47D3A.29, isoform a [Caenorhabditis elegans]
          Length = 1428

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 430/1206 (35%), Positives = 636/1206 (52%), Gaps = 136/1206 (11%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            ++  Y +DA+E +  AN GT+YLFGKVK +G+   +C +VVKN+ R VY +P      T 
Sbjct: 325  AIRMYWIDAYEDVHKAN-GTVYLFGKVKTSGNAWETCSIVVKNICRKVYFMPRTKNLST- 382

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVK----RRY 447
                     EES ++              L  EI + L N  N   +    V+    R  
Sbjct: 383  --------GEESSLAE-------------LHKEIGDVLRNKFNTHEFKCKMVEKELIRDE 421

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            +FG       ++ ++++ YP +   LP+DLKG+ F +   T  + LE  L+++K  GP W
Sbjct: 422  SFGYG--CGTKSPLMEVLYPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGW 479

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            + +  +S   A  + S CKYE  VD  K   +       A  P + + A+N+ T  N R+
Sbjct: 480  IELYNYSDPKA--KTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKLLALNVVTTLNDRK 537

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE-ATDRN 626
            D NEI   S++   K  +  P   S+  KP  L     V K  GG  P    K   T++ 
Sbjct: 538  D-NEICMISMLFNPKCDLAHPSGDSKDLKPKCL-----VTKPPGGSLPYDIQKRLETEKL 591

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            SK   +V    ++E+ALL   +  + + + D++VGH++S   + +L+ R +  ++P+  W
Sbjct: 592  SKFVKSV----ANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPN--W 644

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S+I RLKRS    +  G+   G   S G     AGR++ D+ L + +L++  S+ LT+L+
Sbjct: 645  SRISRLKRS----INIGK--IGHSKS-GQWELTAGRMMLDSKLAAMELVKSRSFDLTELS 697

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            +  L  +R+E+  +++ +++   + L+ LI +   D  LS+ ++  L+ LPL  Q++ I 
Sbjct: 698  QQILGAERREIYANEIPQLYVDSKDLISLINWSWNDLLLSLRIVVRLNALPLYIQISQIV 757

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G +  +T+ G RA+R EYLLLHAF     I PDK+   +  K  ++              
Sbjct: 758  GGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEE-------------- 803

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                      +   D +K  +   Y+GGLVLEPKKGLY+  ILLLDFNSLYPSIIQEYNI
Sbjct: 804  ----------SQEGDEKKSGKA-QYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852

Query: 927  CFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
            C+TT+E S D      VP   S+   GVLP  ++ LV+ RR VK+ MK+     K +Q+D
Sbjct: 853  CYTTLEYSKDSDEQLSVPQ--STDIEGVLPREIRKLVECRRDVKSLMKSERNEAKKKQMD 910

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLGF  SRFYAKPLA L+T +GREIL  + DLV+  +   V+YGD
Sbjct: 911  IRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVE-KMGYSVVYGD 969

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            TDSIMI++   D+  AK +  ++ + VNK ++ LE+DLDG++KRMLLLKKKKYAA+ +  
Sbjct: 970  TDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTIN- 1028

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKVQED 1160
                  E  E KGLD+VRRDWS L+KE G   + +IL      D +V SI + L +++  
Sbjct: 1029 -PDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAK 1087

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            + SG V LE + I+K LT+ PE Y D K Q H  VA RL +SG        D V Y+I C
Sbjct: 1088 LDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG-KFNLRHNDIVEYVI-C 1145

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            E GT + ++    QRA H  E+ + +    ID+ YY +QQIHPVVSRL   IE T   R+
Sbjct: 1146 EDGTDNPAT----QRAYHRTEMAE-NSALKIDLLYYLAQQIHPVVSRLVEPIEETDAVRI 1200

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCP--SCS------S 1332
            A+ LGLD + ++   +   S   +         +E Y  CE + + CP   C        
Sbjct: 1201 AENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHSNVIRE 1258

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
            TFDC    SS  +  S                 C +C    +       +I NQV RQ  
Sbjct: 1259 TFDCVTDASSPRLLFS----------------GCAQCQGSWDLQE-HQAVIGNQVDRQMS 1301

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLY 1451
             FV+ ++     CD+ TC++ T    ++ +     G  C    RC+ G L R+YT   L+
Sbjct: 1302 EFVARHHLAAFKCDEPTCEFKT---RVQTMKWCREGLEC---IRCSTGVLRREYTSKQLF 1355

Query: 1452 KQLTYFCHLLDTQRGIEKM----EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGW 1507
             Q  +F  +LD    + K+    + +AK+ +E    KI  ++ LA    ++  E+ AY  
Sbjct: 1356 DQQMFFRTILDVDAAVRKLSDAQKKAAKVRVEYNGCKIDSMM-LADRINEKYLEKNAYNR 1414

Query: 1508 VKLNDI 1513
            V L+ I
Sbjct: 1415 VDLSYI 1420


>gi|45190983|ref|NP_985237.1| AER381Cp [Ashbya gossypii ATCC 10895]
 gi|44984051|gb|AAS53061.1| AER381Cp [Ashbya gossypii ATCC 10895]
          Length = 1435

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 400/1195 (33%), Positives = 609/1195 (50%), Gaps = 132/1195 (11%)

Query: 353  TLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            +L LFGK+K     H S  V V  + R +Y +P                           
Sbjct: 333  SLLLFGKIKTLNGKHISAMVQVAGIYRELYFLP--------------------------- 365

Query: 412  RKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
              +    AL +  EI   L++   +S     P K+ YAF  A+IP    Y LK+  P++ 
Sbjct: 366  --REGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFELADIPKEAEY-LKVLLPYET 422

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            P      +P+DL G+ FC + G +SS  E F+++R++ GP WLSI K       +  S C
Sbjct: 423  PKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCWLSI-KQGDFNEIKNSSHC 481

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
              E+ +  P++I   S  +     P +   +++++TV N + +  EIVS S+   +    
Sbjct: 482  DSEVFISIPQNI---SPHQERLPAPELKCVSLSVQTVMNVKDNKQEIVSISMCYYNDLPQ 538

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            DTP+   E  KP  +   T+VR + G  FP G N     R    G+  +   +SE+ LLN
Sbjct: 539  DTPI--EENLKPSDI--ITLVRPVKGSSFPPGLN--VLSRKELQGT--VRTFNSEKVLLN 590

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
                 + + D DVL+GH +    LDVL HRA   R+P+  +S  GR  R   P+ R G+ 
Sbjct: 591  CFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPT--FSSFGRRLRRSWPE-RFGKN 647

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRK--EVG 758
               S A   I    +GRLLCD    S ++ + +     S+ L ++ +    ++ K  E+ 
Sbjct: 648  -NASMAQFYIRDIFSGRLLCD---ISNEMGQSLTPKCQSWELGEMYQVVCQREYKPLEIN 703

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
             +D  +  +    L+  +    T++  S E+ F + +L LT+QLTN++GN WG TL G R
Sbjct: 704  FNDS-RYHEDANFLVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTR 762

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            A R E++LLH F    YI+PDK +  ++ + A+Q+ N    D +V               
Sbjct: 763  AGRNEFILLHEFYRNNYILPDKES--RQMRSARQQQNVDTPDGDVA-------------- 806

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL 938
              D R   +   Y GGLV +P KGL+  YIL++DFNSLYPSIIQE+NICFTTVER+P  +
Sbjct: 807  -TDSRNSNKKAKYQGGLVFDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTTVERNPHDI 865

Query: 939  --VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMY 995
              +P +P+    GVLP LL NLV+RRR VK  M   +   K  + DI+QQALKLTANSMY
Sbjct: 866  DELPQVPTEAKPGVLPRLLANLVERRREVKKLMNAETDAHKKAECDIRQQALKLTANSMY 925

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLG+ NSRFYAKPLA L+T +GREIL +T  L + +L L V+YGDTDS+MI +G D+  
Sbjct: 926  GCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAE-SLGLAVVYGDTDSVMIDTGCDNYR 984

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKG 1114
            +A +I     + VN++Y+ LEID+D ++K++LL  KKKYAA+ V F K G     +E KG
Sbjct: 985  EALSIGENFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKG 1044

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDM RR++  LSKEV    L+ ILS++  E  +E++++ +  ++  + + ++  +K+ I 
Sbjct: 1045 LDMRRREYCPLSKEVSTQVLNTILSDQDSESALENVYDYMETIKSKIENNEIRADKFKIN 1104

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              L+K P++YP+ K  P VQVAL+++  G     +AG  + +++   +GT        A 
Sbjct: 1105 TRLSKDPKSYPNGKTMPAVQVALKMRAVGRVV--NAGTVITFVVT--KGTDESEQSNPAD 1160

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RAR   E+       + D  YY  +QI   V RL   IE     RL + LG+D  +F + 
Sbjct: 1161 RARPLHEVMNKANGLVPDPMYYLEKQIFAPVERLLQKIESFDVVRLGNALGIDGRRFINN 1220

Query: 1295 PSETMSSDPS-SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
              ++ S+      L   + D ER++    + ++CPSC + F    + +S           
Sbjct: 1221 VQDSTSNRSELQPLESTISDMERFKDATAMRVTCPSCQAKFPFGGIVAS----------- 1269

Query: 1354 PETEYNF-WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKY 1412
                Y F +  L+C  C         +P  + +Q++      +S++Y   M+CDD TC  
Sbjct: 1270 --NHYQFTYSGLQCKACNH-----IFAPLQLTSQLEFAIRAHISLFYAAWMVCDDPTCGT 1322

Query: 1413 TTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT----QRGIE 1468
             T  L++        G  C N   C G +  +Y++  LY QL YF  L D      R ++
Sbjct: 1323 VTRQLSV-------FGKRCLN-EACTGVMHYRYSDKQLYNQLLYFDSLFDVTKTKNRDLK 1374

Query: 1469 KMEISAKIPLEKELNKIRPVVALAA----------STVQRIRERCAYGWVKLNDI 1513
             + +     +  E      V ALA             VQ+   +C   +V + +I
Sbjct: 1375 PLYLPGDADMPTEPLSASQVAALAEQNRDLLELNRGVVQKYLSQCGRRYVDMGEI 1429



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 41  DSVGYNIKLENPIYDTVAEDEYDALVARRREEARG-FIVDDDGLGYGDEGQEEDWSVAGL 99
           + +GYN   EN +YD V E+++     RRRE  R  F+VDDDG GY + G +E     G 
Sbjct: 28  EELGYND--ENRVYDLVGEEQFQE--QRRRELLRDDFVVDDDGQGYVNNGLDEWADTRGD 83

Query: 100 PSSSDDESLDGQRSIKK 116
            SS +++    Q S KK
Sbjct: 84  VSSDENDPQQRQASNKK 100


>gi|374108462|gb|AEY97369.1| FAER381Cp [Ashbya gossypii FDAG1]
          Length = 1435

 Score =  564 bits (1454), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 400/1195 (33%), Positives = 609/1195 (50%), Gaps = 132/1195 (11%)

Query: 353  TLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            +L LFGK+K     H S  V V  + R +Y +P                           
Sbjct: 333  SLLLFGKIKTLNGKHISAMVQVAGIYRELYFLP--------------------------- 365

Query: 412  RKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
              +    AL +  EI   L++   +S     P K+ YAF  A+IP    Y LK+  P++ 
Sbjct: 366  --REGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFELADIPKEAEY-LKVLLPYET 422

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            P      +P+DL G+ FC + G +SS  E F+++R++ GP WLSI K       +  S C
Sbjct: 423  PKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCWLSI-KQGDFNEIKNSSHC 481

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
              E+ +  P++I   S  +     P +   +++++TV N + +  EIVS S+   +    
Sbjct: 482  DSEVFISIPQNI---SPHQERLPAPELKCVSLSVQTVMNVKDNKQEIVSISMCYYNDLPQ 538

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            DTP+   E  KP  +   T+VR + G  FP G N     R    G+  +   +SE+ LLN
Sbjct: 539  DTPI--EENLKPSDI--ITLVRPVKGSSFPPGLN--VLSRKELQGT--VRTFNSEKVLLN 590

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
                 + + D DVL+GH +    LDVL HRA   R+P+  +S  GR  R   P+ R G+ 
Sbjct: 591  CFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPT--FSSFGRRLRRSWPE-RFGKN 647

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRK--EVG 758
               S A   I    +GRLLCD    S ++ + +     S+ L ++ +    ++ K  E+ 
Sbjct: 648  -NASMAQFYIRDIFSGRLLCD---ISNEMGQSLTPKCQSWELGEMYQVVCQREYKPLEIN 703

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
             +D  +  +    L+  +    T++  S E+ F + +L LT+QLTN++GN WG TL G R
Sbjct: 704  FNDS-RYHEDANFLVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTR 762

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            A R E++LLH F    YI+PDK +  ++ + A+Q+ N    D +V               
Sbjct: 763  AGRNEFILLHEFYRNNYILPDKES--RQMRSARQQQNVDTPDGDVA-------------- 806

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL 938
              D R   +   Y GGLV +P KGL+  YIL++DFNSLYPSIIQE+NICFTTVER+P  +
Sbjct: 807  -TDSRNSNKKAKYQGGLVFDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTTVERNPHDI 865

Query: 939  --VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMY 995
              +P +P+    GVLP LL NLV+RRR VK  M   +   K  + DI+QQALKLTANSMY
Sbjct: 866  DELPQVPTEAKPGVLPRLLANLVERRREVKKLMNAETDAHKKAECDIRQQALKLTANSMY 925

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLG+ NSRFYAKPLA L+T +GREIL +T  L + +L L V+YGDTDS+MI +G D+  
Sbjct: 926  GCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAE-SLGLAVVYGDTDSVMIDTGCDNYR 984

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKG 1114
            +A +I     + VN++Y+ LEID+D ++K++LL  KKKYAA+ V F K G     +E KG
Sbjct: 985  EALSIGENFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKG 1044

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDM RR++  LSKEV    L+ ILS++  E  +E++++ +  ++  + + ++  +K+ I 
Sbjct: 1045 LDMRRREYCPLSKEVSTQVLNTILSDQDSESALENVYDYMETIKSKIENNEIRADKFKIN 1104

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              L+K P++YP+ K  P VQVAL+++  G     +AG  + +++   +GT        A 
Sbjct: 1105 TRLSKDPKSYPNGKTMPAVQVALKMRAVGRVV--NAGTVITFVVT--KGTDESEQSNPAD 1160

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RAR   E+       + D  YY  +QI   V RL   IE     RL + LG+D  +F + 
Sbjct: 1161 RARPLHEVMNKANGLVPDPMYYLEKQIFAPVERLLQKIESFDVVRLGNALGIDGRRFINN 1220

Query: 1295 PSETMSSDPS-SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
              ++ S+      L   + D ER++    + ++CPSC + F    + +S           
Sbjct: 1221 VQDSTSNRSELQPLESTISDMERFKDATAMRVTCPSCQAKFPFGGIVAS----------- 1269

Query: 1354 PETEYNF-WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKY 1412
                Y F +  L+C  C         +P  + +Q++      +S++Y   M+CDD TC  
Sbjct: 1270 --NHYQFTYSGLQCKACNH-----IFAPLQLTSQLEFAIRAHISLFYAAWMVCDDPTCGT 1322

Query: 1413 TTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT----QRGIE 1468
             T  L++        G  C N   C G +  +Y++  LY QL YF  L D      R ++
Sbjct: 1323 VTRQLSV-------FGKRCLN-EACTGVMHYRYSDKQLYNQLLYFDSLFDVTKTKNRDLK 1374

Query: 1469 KMEISAKIPLEKELNKIRPVVALAA----------STVQRIRERCAYGWVKLNDI 1513
             + +     +  E      V ALA             VQ+   +C   +V + +I
Sbjct: 1375 PLYLPGDADMPTEPLSASQVAALAEQNRDLLELNRGVVQKYLSQCGRRYVDMGEI 1429



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 41  DSVGYNIKLENPIYDTVAEDEYDALVARRREEARG-FIVDDDGLGYGDEGQEEDWSVAGL 99
           + +GYN   EN +YD V E+++     RRRE  R  F+VDDDG GY + G +E     G 
Sbjct: 28  EELGYND--ENRVYDLVGEEQFQE--QRRRELLRDDFVVDDDGQGYVNNGLDEWADTRGD 83

Query: 100 PSSSDDESLDGQRSIKK 116
            SS +++    Q S KK
Sbjct: 84  VSSDENDPQQRQASNKK 100


>gi|146082971|ref|XP_001464643.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
            infantum JPCM5]
 gi|134068736|emb|CAM67041.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
            infantum JPCM5]
          Length = 1340

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 385/1035 (37%), Positives = 561/1035 (54%), Gaps = 136/1035 (13%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGK+   K G T + SCCV V+NM R V+ +P     Q
Sbjct: 243  FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGSSQ 302

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 303  EDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
               +P  +    K+ YP + PPL A     +   ++G  SS LELFL+KRK+KGPS+L I
Sbjct: 334  VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPSFLRI 393

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S   +  +  R+S C  E +VDSPK++R   +      VPP T+ +I + T  + +   N
Sbjct: 394  SGLVA--SANRISHCALEFSVDSPKNLRAEDTK---LPVPPFTLASIQIHTQLDSKGACN 448

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI+ ASV       I+  +    +    +L   T VR       P+  + E+    S  G
Sbjct: 449  EILIASVAIYKDVNIENTI---RYIPDNIL---TGVRPASMST-PLPIDLESY--CSAKG 499

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
               +   ++ERALL+ L  +L K+D+D+++GHN  GF LD+LL R Q   + S  WS IG
Sbjct: 500  LPGVRRFANERALLDWLAQQLGKIDADMMIGHNFLGFTLDILLRRYQELSISS--WSTIG 557

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ- 749
            RL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA    
Sbjct: 558  RLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLADQMQ 612

Query: 750  ---LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
               + K      P   +    M      + +++      A LS  ++ HL V+ LT++LT
Sbjct: 613  LQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLT 672

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I+GNLW +TL GAR++R+EYLLLH F   K+I PD++                      
Sbjct: 673  TIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV--------------------- 711

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                    NF       +   GKR   Y GG+VL+PK GLY  YILLLDFNSLYPS+IQE
Sbjct: 712  -------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQE 764

Query: 924  YNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQRRRMV 965
            +NICFTTV+R          P+ L+    S    G         VLP+++K+LV  RR V
Sbjct: 765  FNICFTTVDRESGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVDSRREV 822

Query: 966  KTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  MK    A+ L +  L+I+Q+ALKLTANSMYGCLGF  SRF+A+PLAEL+T+QGR  L
Sbjct: 823  KRLMKIEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLAL 880

Query: 1023 RSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            +STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +   +  ++NK+Y+ LEID+D
Sbjct: 881  QSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDID 940

Query: 1081 GLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            G+++ +LLLKKKKYAA+ V     +G  Y+  E KGLDMVRRDW  LSK V D  LS++L
Sbjct: 941  GVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKCVCDSVLSRVL 999

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            +    ED+++ + N +  V E +R+G+  L+ +VI+K+LTK PEAY    + PH  VALR
Sbjct: 1000 NAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFVISKSLTKEPEAY-RGNSFPHATVALR 1058

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ         GD +PY+IC        +   ++ +A H +E+++ + +  ID ++Y S
Sbjct: 1059 MKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQLQIDSEWYLS 1107

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
             QI+P V RLC  I+G S  +L++ +G+     +K + + +ETM+    SSL  +   EE
Sbjct: 1108 VQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAETMNDFSHSSLFQSRKLEE 1167

Query: 1316 RYRGCEPLILSCPSC 1330
             +     L ++C  C
Sbjct: 1168 CFPAALSLQVACTHC 1182


>gi|392896657|ref|NP_001255108.1| Protein Y47D3A.29, isoform b [Caenorhabditis elegans]
 gi|257146921|emb|CBB16332.1| Protein Y47D3A.29, isoform b [Caenorhabditis elegans]
          Length = 1456

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 418/1164 (35%), Positives = 615/1164 (52%), Gaps = 131/1164 (11%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            ++  Y +DA+E +  AN GT+YLFGKVK +G+   +C +VVKN+ R VY +P      T 
Sbjct: 325  AIRMYWIDAYEDVHKAN-GTVYLFGKVKTSGNAWETCSIVVKNICRKVYFMPRTKNLST- 382

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN-LNVSNYIVSPVK----RRY 447
                     EES ++              L  EI + L N  N   +    V+    R  
Sbjct: 383  --------GEESSLAE-------------LHKEIGDVLRNKFNTHEFKCKMVEKELIRDE 421

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            +FG       ++ ++++ YP +   LP+DLKG+ F +   T  + LE  L+++K  GP W
Sbjct: 422  SFGYG--CGTKSPLMEVLYPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGW 479

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            + +  +S   A  + S CKYE  VD  K   +       A  P + + A+N+ T  N R+
Sbjct: 480  IELYNYSDPKA--KTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKLLALNVVTTLNDRK 537

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE-ATDRN 626
            D NEI   S++   K  +  P   S+  KP  L     V K  GG  P    K   T++ 
Sbjct: 538  D-NEICMISMLFNPKCDLAHPSGDSKDLKPKCL-----VTKPPGGSLPYDIQKRLETEKL 591

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            SK   +V    ++E+ALL   +  + + + D++VGH++S   + +L+ R +  ++P+  W
Sbjct: 592  SKFVKSV----ANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPN--W 644

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            S+I RLKRS    +  G+   G   S G     AGR++ D+ L + +L++  S+ LT+L+
Sbjct: 645  SRISRLKRS----INIGK--IGHSKS-GQWELTAGRMMLDSKLAAMELVKSRSFDLTELS 697

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            +  L  +R+E+  +++ +++   + L+ LI +   D  LS+ ++  L+ LPL  Q++ I 
Sbjct: 698  QQILGAERREIYANEIPQLYVDSKDLISLINWSWNDLLLSLRIVVRLNALPLYIQISQIV 757

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G +  +T+ G RA+R EYLLLHAF     I PDK+   +  K  ++              
Sbjct: 758  GGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEE-------------- 803

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                      +   D +K  +   Y+GGLVLEPKKGLY+  ILLLDFNSLYPSIIQEYNI
Sbjct: 804  ----------SQEGDEKKSGKA-QYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852

Query: 927  CFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
            C+TT+E S D      VP   S+   GVLP  ++ LV+ RR VK+ MK+     K +Q+D
Sbjct: 853  CYTTLEYSKDSDEQLSVPQ--STDIEGVLPREIRKLVECRRDVKSLMKSERNEAKKKQMD 910

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
            I+Q ALKLTANSMYGCLGF  SRFYAKPLA L+T +GREIL  + DLV+  +   V+YGD
Sbjct: 911  IRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVE-KMGYSVVYGD 969

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            TDSIMI++   D+  AK +  ++ + VNK ++ LE+DLDG++KRMLLLKKKKYAA+ +  
Sbjct: 970  TDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTIN- 1028

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKVQED 1160
                  E  E KGLD+VRRDWS L+KE G   + +IL      D +V SI + L +++  
Sbjct: 1029 -PDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAK 1087

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            + SG V LE + I+K LT+ PE Y D K Q H  VA RL +SG        D V Y+I C
Sbjct: 1088 LDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG-KFNLRHNDIVEYVI-C 1145

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            E GT + ++    QRA H  E+ + +    ID+ YY +QQIHPVVSRL   IE T   R+
Sbjct: 1146 EDGTDNPAT----QRAYHRTEMAE-NSALKIDLLYYLAQQIHPVVSRLVEPIEETDAVRI 1200

Query: 1281 ADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCP--SCS------S 1332
            A+ LGLD + ++   +   S   +         +E Y  CE + + CP   C        
Sbjct: 1201 AENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHSNVIRE 1258

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
            TFDC    SS  +  S                 C +C    +       +I NQV RQ  
Sbjct: 1259 TFDCVTDASSPRLLFS----------------GCAQCQGSWDLQE-HQAVIGNQVDRQMS 1301

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLY 1451
             FV+ ++     CD+ TC++ T    ++ +     G  C    RC+ G L R+YT   L+
Sbjct: 1302 EFVARHHLAAFKCDEPTCEFKT---RVQTMKWCREGLEC---IRCSTGVLRREYTSKQLF 1355

Query: 1452 KQLTYFCHLLDTQRGIEKMEISAK 1475
             Q  +F  +LD    + K+  + K
Sbjct: 1356 DQQMFFRTILDVDAAVRKLSDAQK 1379


>gi|6015009|sp|O00874.1|DPOLA_LEIDO RecName: Full=DNA polymerase alpha catalytic subunit
 gi|2138288|gb|AAC47538.1| DNA polymerase alpha catalytic subunit [Leishmania donovani]
          Length = 1339

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 384/1035 (37%), Positives = 561/1035 (54%), Gaps = 136/1035 (13%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGK+   K G T + SCCV V+NM R V+ +P     Q
Sbjct: 243  FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGSSQ 302

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 303  EDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
               +P  +    K+ YP + PPL A     +   ++G  SS LELFL+KRK+KGPS+L I
Sbjct: 334  VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPSFLRI 393

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S   +  +  R+S C  E +V+SPK++R   +      VPP T+ +I + T  + +   N
Sbjct: 394  SGLVA--SANRISHCALEFSVESPKNLRAEDTK---LPVPPFTLASIQIHTQLDSKGACN 448

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI+ ASV       I+  +    +    +L   T VR       P+  + E+    S  G
Sbjct: 449  EILIASVAIYKDVNIENTI---RYIPDNIL---TGVRPASMST-PLPIDLESY--CSAKG 499

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
               +   ++ERALL+ L  +L K+D+D+++GHN  GF LD+LL R Q   + S  WS IG
Sbjct: 500  LPGVRRFANERALLDWLAQQLGKIDADMMIGHNFLGFTLDILLRRYQELSISS--WSTIG 557

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ- 749
            RL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA    
Sbjct: 558  RLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLADQMQ 612

Query: 750  ---LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
               + K      P   +    M      + +++      A LS  ++ HL V+ LT++LT
Sbjct: 613  LQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLT 672

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I+GNLW +TL GAR++R+EYLLLH F   K+I PD++                      
Sbjct: 673  TIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV--------------------- 711

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                    NF       +   GKR   Y GG+VL+PK GLY  YILLLDFNSLYPS+IQE
Sbjct: 712  -------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQE 764

Query: 924  YNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQRRRMV 965
            +NICFTTV+R          P+ L+    S    G         VLP+++K+LV  RR V
Sbjct: 765  FNICFTTVDRESGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVDSRREV 822

Query: 966  KTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  MK    A+ L +  L+I+Q+ALKLTANSMYGCLGF  SRF+A+PLAEL+T+QGR  L
Sbjct: 823  KRLMKIEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLAL 880

Query: 1023 RSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            +STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +   +  ++NK+Y+ LEID+D
Sbjct: 881  QSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDID 940

Query: 1081 GLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            G+++ +LLLKKKKYAA+ V     +G  Y+  E KGLDMVRRDW  LSK V D  LS++L
Sbjct: 941  GVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKCVCDSVLSRVL 999

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            +    ED+++ + N +  V E +R+G+  L+ +VI+K+LTK PEAY    + PH  VALR
Sbjct: 1000 NAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFVISKSLTKEPEAY-RGNSFPHATVALR 1058

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ         GD +PY+IC        +   ++ +A H +E+++ + +  ID ++Y S
Sbjct: 1059 MKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQLQIDSEWYLS 1107

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
             QI+P V RLC  I+G S  +L++ +G+     +K + + +ETM+    SSL  +   EE
Sbjct: 1108 VQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAETMNDFSHSSLFQSRNLEE 1167

Query: 1316 RYRGCEPLILSCPSC 1330
             +     L ++C  C
Sbjct: 1168 CFPAALSLQVACTHC 1182


>gi|398013311|ref|XP_003859848.1| DNA polymerase I alpha catalytic subunit, putative [Leishmania
            donovani]
 gi|322498065|emb|CBZ33141.1| DNA polymerase I alpha catalytic subunit, putative [Leishmania
            donovani]
          Length = 1340

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 384/1035 (37%), Positives = 561/1035 (54%), Gaps = 136/1035 (13%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGK+   K G T + SCCV V+NM R V+ +P     Q
Sbjct: 243  FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGSSQ 302

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 303  EDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
               +P  +    K+ YP + PPL A     +   ++G  SS LELFL+KRK+KGPS+L I
Sbjct: 334  VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPSFLRI 393

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S   +  +  R+S C  E +V+SPK++R   +      VPP T+ +I + T  + +   N
Sbjct: 394  SGLVA--SANRISHCALEFSVESPKNLRAEDTK---LPVPPFTLASIQIHTQLDSKGACN 448

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI+ ASV       I+  +    +    +L   T VR       P+  + E+    S  G
Sbjct: 449  EILIASVAIYKDVNIENTI---RYIPDNIL---TGVRPASMST-PLPIDLESY--CSAKG 499

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
               +   ++ERALL+ L  +L K+D+D+++GHN  GF LD+LL R Q   + S  WS IG
Sbjct: 500  LPGVRRFANERALLDWLAQQLGKIDADMMIGHNFLGFTLDILLRRYQELSISS--WSTIG 557

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ- 749
            RL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA    
Sbjct: 558  RLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLADQMQ 612

Query: 750  ---LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
               + K      P   +    M      + +++      A LS  ++ HL V+ LT++LT
Sbjct: 613  LQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLT 672

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I+GNLW +TL GAR++R+EYLLLH F   K+I PD++                      
Sbjct: 673  TIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV--------------------- 711

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                    NF       +   GKR   Y GG+VL+PK GLY  YILLLDFNSLYPS+IQE
Sbjct: 712  -------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQE 764

Query: 924  YNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQRRRMV 965
            +NICFTTV+R          P+ L+    S    G         VLP+++K+LV  RR V
Sbjct: 765  FNICFTTVDRESGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVDSRREV 822

Query: 966  KTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  MK    A+ L +  L+I+Q+ALKLTANSMYGCLGF  SRF+A+PLAEL+T+QGR  L
Sbjct: 823  KRLMKIEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLAL 880

Query: 1023 RSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            +STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +   +  ++NK+Y+ LEID+D
Sbjct: 881  QSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDID 940

Query: 1081 GLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            G+++ +LLLKKKKYAA+ V     +G  Y+  E KGLDMVRRDW  LSK V D  LS++L
Sbjct: 941  GVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKCVCDSVLSRVL 999

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            +    ED+++ + N +  V E +R+G+  L+ +VI+K+LTK PEAY    + PH  VALR
Sbjct: 1000 NAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFVISKSLTKEPEAY-RGNSFPHATVALR 1058

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ         GD +PY+IC        +   ++ +A H +E+++ + +  ID ++Y S
Sbjct: 1059 MKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQLQIDSEWYLS 1107

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
             QI+P V RLC  I+G S  +L++ +G+     +K + + +ETM+    SSL  +   EE
Sbjct: 1108 VQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAETMNDFSHSSLFQSRNLEE 1167

Query: 1316 RYRGCEPLILSCPSC 1330
             +     L ++C  C
Sbjct: 1168 CFPAALSLQVACTHC 1182


>gi|66359588|ref|XP_626972.1| DNA polymerase alpha catalytic subunit [Cryptosporidium parvum Iowa
            II]
 gi|46228043|gb|EAK88942.1| DNA polymerase alpha catalytic subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1488

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 446/1370 (32%), Positives = 691/1370 (50%), Gaps = 226/1370 (16%)

Query: 25   ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
            AL  ++ +R G  ++ D+  Y +K +N I++ V E+EY  ++  RR  +  F+VDD+G+G
Sbjct: 13   ALSEIRKIREGKIKASDA--YTLK-DNDIFEEVDEEEYQNIIKERR--SGNFVVDDNGIG 67

Query: 85   YGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE--KRGKKENNQNVRK----PNPSL 138
            Y D+G++   +   LPS    E+   +R+ KK+R E  K+G  E    +R+    P+  L
Sbjct: 68   YEDDGRDLMENYIPLPS----ENNVAKRNDKKRRKEHIKKGLNEGGSILRQFQFIPD-DL 122

Query: 139  TAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAE-FAPDEADRERRRRSVS 197
                 +  KQ+            KSK   +  +  V D+ L E    D+ + E+    +S
Sbjct: 123  AEKDGLRIKQKQET---------KSKSMDILSTLKVFDDSLFEDIDMDDRENEKNEPKIS 173

Query: 198  SNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTE 257
                  V  ++ + +  +  N+ N+   +    N F+  +N  + +     + E     +
Sbjct: 174  E-----VKEDNTRLDEMIQINTLNTSNNSGQYENTFIIDENESMTQNPSPNQDEQFIPGD 228

Query: 258  LTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGK 317
              +  + +E ++   DE     KECK                   + ++  G + +D   
Sbjct: 229  TPESLDLLEEQKNYTDEQEILGKECK-------------------YMKLGDGTVNIDRKP 269

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGS--------THHSC 369
            SG + Q      +++ SL FY+++  E  SGA  G LYLFGK+   S        +  SC
Sbjct: 270  SGTSAQ---VYTNEEESLIFYLIEVTED-SGA--GELYLFGKIMTFSGMDEKIHFSTESC 323

Query: 370  CVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQ 429
            C+V+K   R +Y  P              +++  +   P++  + +    L L+ E    
Sbjct: 324  CLVIKETWRSLYVYP--------------RESMPNHPDPISVSQDVAKEILELRKE---- 365

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENY-VLKINYPFKDPPLPADLKGENFCSLLGT 488
                 +    + PV R + F + ++  G N   LK+ Y  K+P LP +L GE F  + GT
Sbjct: 366  ---YRIPKIQIKPVVRNFCFSEKDVKYGPNQPFLKLLYSSKNPSLPTNLSGETFSRIFGT 422

Query: 489  HSSALELFLVKRKVKGPSWLSISK-FSSCP-APQRVSWCKYEITVDSPKDIR----VSSS 542
             +S  E F++KR +KGPSWL ISK +   P    R S CK E+ V + K IR    V+S+
Sbjct: 423  STSLTENFIIKRDIKGPSWLVISKPYQIVPVGGGRKSQCKVEVHVPNWKSIRPWALVNSN 482

Query: 543  S------------------KHVAEVPPVTVTAINLKTVFNKRQDVN-EIVSASVVCCHKA 583
            +                  K +   P +++T IN+ +        N EI S S+V     
Sbjct: 483  NSRMDDCSKIQRLEENSLEKTLTSSPLISITCINVCSRLPSNGSGNPEIYSISMVTIKNM 542

Query: 584  KIDTPMLASEWKK--------------PGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
             ID     ++W +               G +  +T +R+     FP+G    + ++  K+
Sbjct: 543  NIDD----AQWDEINSSEILQKRRIPGNGEIHTWTGIRRYGSSSFPIG----SEEKMEKS 594

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            G N     S+ER+LL   +     LD D++VGHN+    LDVL+ R     VP+ +W K+
Sbjct: 595  GINYF---SNERSLLLAFVTSFSLLDPDIIVGHNVWTDHLDVLVSRMVNIGVPN-IW-KL 649

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
            G++  S      + ++I    ++  I S   GR++CDT L +R+ ++  +         Q
Sbjct: 650  GKICISVQ---NQKQSIKSLSSTKRIQSVFQGRIICDTCLSAREFMKSRT-------DYQ 699

Query: 750  LNKDRKEVGPHDV-----------------LKMFQTLESLMELIEYGETDAWLSMELMFH 792
            LN    EV P D+                 L+ +++ E++ + +      +    +L+FH
Sbjct: 700  LNSIFSEVFPRDLELQKASVIKPASAEAYHLETYKSFETISKSLTRDLIVSVGIFKLLFH 759

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L VLPLTR+LTN++G LW K+L   RA+R EYLLLH F   K++ PD    ++  +  K 
Sbjct: 760  LQVLPLTRELTNLAGFLWSKSLLFLRAERNEYLLLHEFHKGKFVTPD---CIQRNQKYKI 816

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            R+    ED  + E+  +D N             K+   Y+GGLVLEP  GLYD +ILLLD
Sbjct: 817  RA----EDSLISEIDKDDNN------------SKKEETYSGGLVLEPITGLYDSFILLLD 860

Query: 913  FNSLYPSIIQEYNICFTTVERS---PDG--------LVPHLPSSKT--TGVLPELLKNLV 959
            FNSLYPSIIQE+NICFTT E +   PD         L+    SS    + VLP +L++LV
Sbjct: 861  FNSLYPSIIQEFNICFTTREPTDLGPDATETFESSSLIDRNSSSNQFDSTVLPGILESLV 920

Query: 960  QRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
            +RRR +K  +K   SG +  QL+I+Q ALKLTANS+YGCLG+ NSRFYAK LA +IT  G
Sbjct: 921  KRRRHIKEILKNMPSGTRKSQLEIRQLALKLTANSLYGCLGYKNSRFYAKDLASIITFYG 980

Query: 1019 REILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA------IAGKVIQEVNKKY 1072
            R+IL+ T   V++   L+VIYGDTDSIM+++ I D    +       +A ++ Q VNK Y
Sbjct: 981  RQILQKTKLKVEDETKLQVIYGDTDSIMVNTNILDDGNGEGYYHVLKLASQIKQIVNKDY 1040

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKV------QFKDGMPYEVIERKGLDMVRRDWSLLS 1126
              LE+DLDG+ +R+LLLKKKKYA +++      Q K       +E KGLD+VRRDWS+L+
Sbjct: 1041 TKLELDLDGVLQRLLLLKKKKYACIQIVDFHRKQLK-------LECKGLDLVRRDWSILT 1093

Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
            + V    L+ + S    + V+ +I N+L  + E + S  + LE ++ITKTLTK P+ Y D
Sbjct: 1094 RNVSTQLLNLLFSNEPIDTVITNILNTLESLNEALNSNSIPLESFIITKTLTKLPQFYSD 1153

Query: 1187 AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG-----IAQRARHPDE 1241
                PHV VA R+  SG     S+G  +PYIIC E  + S   V      +++RA  P+E
Sbjct: 1154 PYLLPHVIVAKRMISSGLPV--SSGTEIPYIICKEVNSQSSDEVAPKSSMLSKRAYSPEE 1211

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
            +K       IDI++Y +QQ+ P +SRLCA I G    R+  CLGL+  ++
Sbjct: 1212 VKSNGLN--IDIEWYKTQQLLPPLSRLCAPIPGLEISRIGQCLGLEYKQY 1259


>gi|217344|dbj|BAA14340.1| DNA polymerase alpha [Drosophila melanogaster]
          Length = 1505

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 396/1130 (35%), Positives = 590/1130 (52%), Gaps = 121/1130 (10%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVV 373
            D+ +  +   E +  +  D  L  +  +A+E       G ++LFG+   G    S C+ V
Sbjct: 341  DDFEKSVLTTEQDSTISSDQQLRLWYWEAYEDPVKIP-GQVFLFGRTADGK---SVCLRV 396

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            +N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL   
Sbjct: 397  QNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKLE 444

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP---ADLKGENFCSLLGTHS 490
               +  V+     +A G  E+P   +Y L+++Y   + PLP   AD K  +   + G  +
Sbjct: 445  FFRSRKVTKSFAHHAIG-IEVPQSCDY-LEVHYD-GNKPLPNLSADKKYNSIAHIFGATT 501

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   P P  +SWC  E+T+  PK++ +       A  P
Sbjct: 502  NALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 559

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T+ ++N++T  N +   NEI   S++  ++  ID P       +P    H   + +  
Sbjct: 560  PLTLLSLNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 614

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               +P+  N E     +K  S  +    SERALL+  + +  K+D+D++V  +     L+
Sbjct: 615  VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 670

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    
Sbjct: 671  VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 715

Query: 731  SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    +
Sbjct: 716  AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 775

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHA   K YIVPDK       
Sbjct: 776  RLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHASTEKNYIVPDK------- 828

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
            K   +RS  G  DR    L+  DA            + K+  AYAGGLVLEP +GLY+KY
Sbjct: 829  KPVSKRSGAGDTDRT---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEKY 875

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMV 965
            +LL+D NSLYPSIIQEYNICF  V++  D   +P LP SKT  G+LP  LK LV+ R+ V
Sbjct: 876  VLLMDLNSLYPSIIQEYNICFNPVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKEV 935

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GR+ L
Sbjct: 936  KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGRD-L 993

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             +T  LVQ  +N +V+YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG+
Sbjct: 994  TNTQQLVQK-MNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDGV 1052

Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +  +LLLKKKKYAA+K+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE
Sbjct: 1053 FGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1111

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ 
Sbjct: 1112 KPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQDYRNSASLPHVQVALRMN 1171

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
            +   +     GD V    C +     G++    QRA H DELK   D K  +D +YY   
Sbjct: 1172 RER-NRRYKKGDMVDLCDCLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1225

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM--SSDPSSSLLFAVGDEERY 1317
            QIHPVV+R+   +EGT   R+A+CLG+DP+KF+     T   +++ S          + Y
Sbjct: 1226 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTLQLY 1285

Query: 1318 RGCEPLILSCPSC-------SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCP 1370
            R CEP    C +C       S+    P+      +     PS     ++ W+     +  
Sbjct: 1286 RLCEPFRFQCVTCKTEQLMASAYRPGPSNSHIAVLQQCVSPSAKRHRFSTWQACAILQL- 1344

Query: 1371 EEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR 1420
                                    V  +YK  ++CD   C + T + +LR
Sbjct: 1345 ----------------------SMVQRFYKNWLVCDHPDCNFNTRTHSLR 1372


>gi|254569452|ref|XP_002491836.1| Catalytic subunit of the DNA polymerase I alpha-primase complex
            [Komagataella pastoris GS115]
 gi|238031633|emb|CAY69556.1| Catalytic subunit of the DNA polymerase I alpha-primase complex
            [Komagataella pastoris GS115]
 gi|328351664|emb|CCA38063.1| DNA polymerase alpha subunit A [Komagataella pastoris CBS 7435]
          Length = 1442

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 390/1144 (34%), Positives = 581/1144 (50%), Gaps = 128/1144 (11%)

Query: 354  LYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFR 412
            L LFGKV+  S    S  V V  + R +Y +P     ++D             I+P+   
Sbjct: 325  LLLFGKVRTSSGALVSAMVQVGGVDREIYILPRSS-HRSDSSAPCGPMDVHEEITPLLLE 383

Query: 413  KKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP- 471
            K       GLK+  A              PV  +YAF    +P+  +Y LKI  P   P 
Sbjct: 384  K------YGLKSIRAK-------------PVTMKYAFELPGVPSEADY-LKILLPHDTPL 423

Query: 472  ----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPAPQRVSWC 525
                 LP+ L+GE F  + G HS+  E F++++ V GP WL IS   F S    +  S C
Sbjct: 424  NADLALPSSLEGETFQRVFGGHSALFEDFVLQKDVMGPCWLEISNPDFDSM---RNSSHC 480

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            + E+ + SPKDI V   +   A  P +TV  I ++TV N R +  E+ + S+   ++   
Sbjct: 481  RVEMAIQSPKDITVYRGTDQTA--PNLTVLGITVQTVMNTRTNNQEVAAVSIATFNELPQ 538

Query: 586  DTPMLASEWKKPGMLSHFTVVRKL-DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644
            + P+   E  +P  L   T++R L D  +FP G  +    +  K     + C  +E+ LL
Sbjct: 539  ELPI--PEDLQPDEL--ITLIRPLGDSTVFPPGVQRAIEKQGLK-----IRCTPNEKTLL 589

Query: 645  NRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGR 704
            N L   + + D DV VGH I    LDVL+HR    +VP+  WS  GRL +   P     R
Sbjct: 590  NLLCALVKRADPDVFVGHRIESIQLDVLVHRLYDLKVPT--WSSFGRLNKKVWPDRFPRR 647

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGP 759
                SG    +     GRLLCD      D+ + +     S+ L ++ ++   K  K   P
Sbjct: 648  ----SGGPSKVREIFHGRLLCD---IGNDMGQSLTTKCQSWDLPEMYQSVCGKTFK---P 697

Query: 760  HDVL----KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
             ++     ++ + +  L+ + + G +   ++ E+ F + +L L++ LTN++GN W  TL 
Sbjct: 698  SEIALNNPQLSENVNLLLTVAKEGASMVQITSEITFRIQILSLSKILTNLAGNAWSHTLG 757

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G RA R E++LLH FR   YIVPDK  + ++ +  + +                 +  D+
Sbjct: 758  GTRAGRNEFILLHEFRKNGYIVPDKENFYQKHQQQQLQDQ---------------SPEDD 802

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
            +T+    +K  +   + GGLV EP+KGL+   +L+LDFNSLYPSIIQE+NICFTTVER  
Sbjct: 803  ETTKISSKKNNK---FKGGLVFEPEKGLHRNIVLVLDFNSLYPSIIQEFNICFTTVERES 859

Query: 936  DGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLT 990
              +  +P +P   +  GVLP LL NLV RRR VK  +K +    ++  Q DI+QQALKLT
Sbjct: 860  GNVDTIPPVPVQNSQQGVLPRLLANLVSRRREVKKLLKDSKIGPVEKAQFDIKQQALKLT 919

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG 1050
            ANSMYGCLG+ NSRFYA+PLA L+T +GREIL  T  L ++ L L+V+YGDTDS+MI SG
Sbjct: 920  ANSMYGCLGYVNSRFYARPLAMLVTSKGREILMDTRQLAES-LGLKVVYGDTDSVMIDSG 978

Query: 1051 IDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
              D  +A AI   +  +VN++Y  LEID+D ++KR+LL  KKKYAA+ +  ++G     +
Sbjct: 979  TIDYQEAIAIGEDLKAKVNERYSLLEIDIDNVFKRILLHAKKKYAAMNLSLQNGKMVSQL 1038

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            E KGLDM RR++  LSKE+    L QIL E   ++ +  I+  L  +   +R   + + K
Sbjct: 1039 EVKGLDMRRREYCQLSKEISTHVLEQILGENDSDEALSDIYQYLETMGTKIRENSIPITK 1098

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
            + I   L+K P  Y +A   P VQVALRL+  G      AG  V +I+     T+   ++
Sbjct: 1099 FNINTKLSKDPAQYANAGGMPQVQVALRLR--GQGKVVKAGTVVSFIV-----TAGDDNL 1151

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
             +A+RAR   E+     +   D DYY  +QI   V RL   +EG    RLA CLGLD  +
Sbjct: 1152 SVAERARPLAEVLATPEQLRPDPDYYLEKQIFAPVERLVERLEGVDLVRLAKCLGLDSGR 1211

Query: 1291 F-----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
            +     Q         D    L   + D ER++    L L+C +C + F    +  S   
Sbjct: 1212 YARIRTQYANGGANGDDLLQPLESCISDAERFKEAATLELTC-TCGAHFAFGGIQESSYY 1270

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMC 1405
            +V+            +  ++C  C  ++ + R     +A+Q++R     +S+YY G + C
Sbjct: 1271 TVT------------FSGIQCSSCGTQLSSLR-----VASQLERLIRHHISLYYAGWVEC 1313

Query: 1406 DDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
            DD +C   T  +++   R IG+  R         C G +   YT+ +LY QL Y   L D
Sbjct: 1314 DDVSCGVHTRQVSVYGKRCIGNTGRSV------GCKGVISYVYTDRELYNQLLYLESLFD 1367

Query: 1463 TQRG 1466
              + 
Sbjct: 1368 VDKA 1371


>gi|294658522|ref|XP_460862.2| DEHA2F11440p [Debaryomyces hansenii CBS767]
 gi|202953194|emb|CAG89207.2| DEHA2F11440p [Debaryomyces hansenii CBS767]
          Length = 1470

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 405/1209 (33%), Positives = 601/1209 (49%), Gaps = 137/1209 (11%)

Query: 352  GTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L LFGK++    +    VV V  + R +Y +P       DE      +  E  +S   
Sbjct: 344  NSLLLFGKIQTRDGNLVSGVVKVNGLCRELYFLPRKHRISNDE------EDTEDEVS--- 394

Query: 411  FRKKLQDVALGLKTEIANQLL-NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
                    AL +  E+   LL    + +    P   +YAF    IP    Y LK+  P+K
Sbjct: 395  --------ALDVHEEVTPLLLEKYGLESIKAKPETMKYAFELPGIPKEGEY-LKVLLPYK 445

Query: 470  DPP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSW 524
             P      +P++L+GE F  + GT+++  E  + ++ + GP WL IS   +    Q  S 
Sbjct: 446  TPRNRSLIIPSNLEGETFSHVFGTNANIFEALVSQQNIMGPCWLEISN-GNFTEIQNTSH 504

Query: 525  CKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAK 584
            C+ E+ V SP  +R     K     P +TVT+I+++T+ N +Q+  E+ S S+    +  
Sbjct: 505  CQVEVAVSSPSFVRPIVDLKLAP--PNLTVTSISVQTIMNTKQNKQEVASVSIATYRELP 562

Query: 585  IDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644
             D+P+   E  KP  L    +VR +     P G  + A  +        L    +E+ALL
Sbjct: 563  QDSPI--DENIKPDDL--VVLVRPIGAVAVPPGLAQLAQKQGLP-----LRTFPNEKALL 613

Query: 645  NRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGR 704
            N L   +  LD DV +GH +    LDVL+HR    +V  + WS  GR  R   P  R GR
Sbjct: 614  NCLAALVKNLDPDVFIGHRLENISLDVLVHRMYDLKV--TTWSTFGRRNRKAWPD-RFGR 670

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT-QLNK------DRK-- 755
               G   +  I     GRLLCD       +  E+  SLT   ++  LN+       +K  
Sbjct: 671  NNSGFNNNLQIREIFQGRLLCD-------IANEMGQSLTPKCQSWDLNEMYDVVCHKKQI 723

Query: 756  --EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
              E+  H+  +  +    L+  ++   ++  ++ E+ F + +L L++QLTN++GN W  T
Sbjct: 724  PLEINFHNP-RYAEDASFLLMALKENASNVRITAEVAFSIQILSLSKQLTNLAGNAWSHT 782

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G RA R E++LLH F+   YIVPDK     E K  K  +NH       ++    ++N 
Sbjct: 783  LSGTRAGRNEFILLHEFKRNNYIVPDK-----EDKYHKN-TNH-------QQQAKLESNE 829

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
            ++ T+   ++K    P Y GGLV EP+KGL+  YIL++DFNSLYPSIIQEYNICFTTV R
Sbjct: 830  EDATTATSNKK----PKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEYNICFTTVNR 885

Query: 934  S-------PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQ 983
                     +G +P +P  +   GVLP LL  LV RRR VK  +K      I+  Q DI+
Sbjct: 886  DNYNAAKIDEGDLPDIPDREAAQGVLPRLLNALVSRRREVKKLLKDPKNTAIERAQYDIK 945

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L + ++ L V+YGDTD
Sbjct: 946  QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAE-SIGLRVVYGDTD 1004

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV--KVQF 1101
            S+MI +G+DD  +A  I  +   +VN++YK LEID+D ++KR+LL  KKKYAA+   +  
Sbjct: 1005 SVMIDTGVDDFKEAIKIGEEFKIQVNERYKLLEIDIDNVFKRLLLHAKKKYAAMTTSIDR 1064

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
            K G     +E KGLDM RR++  LSK++  F L +ILS+   E  +  ++  L  +   +
Sbjct: 1065 KTGQEIVKLEVKGLDMRRREYCQLSKDMSTFVLEKILSDADPEQALSDVYEYLEDMTRKI 1124

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            +  ++ ++K+ I   L+K P +YP+ K  P VQVALRL+ SG      AG  + YII   
Sbjct: 1125 KDNEIQVDKFKINTRLSKDPNSYPNGKTMPPVQVALRLRASG--KVIKAGSVITYIITAP 1182

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
               S       A+RAR   E+         D D+Y  +QI   V RL   IEG    R+A
Sbjct: 1183 --ASEDDKAPPAERARAIQEVLNKQANLKPDADFYLEKQIFAPVERLVDRIEGVDMMRIA 1240

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA----VGDEERYRGCEPLILSCPSCSSTFDCP 1337
              LG+D  K+  +     +SD ++  +      + D ER+R    L+L C  C S F   
Sbjct: 1241 SSLGIDTKKYVLR---VKNSDATNGEILPLESNISDSERFRQSSYLVLEC-KCGSKFRFG 1296

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
             + +S    V+            +  + C KC       RI+      QV+      +S+
Sbjct: 1297 GIMASDDYKVT------------FNGICCSKCDYTFPVLRITA-----QVEYTLRNHISL 1339

Query: 1398 YYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQL 1454
            YY G ++CDD  C  TT  +++   R IG + +         C G +  KY++  LY QL
Sbjct: 1340 YYAGWLVCDDSACGITTRQISVYGRRCIGTSGKAH------GCKGVMRYKYSDKALYNQL 1393

Query: 1455 TYFCHLLDTQRGIEKM-----EISAKIPL-----EKELNKIRPVVALAASTVQRIRERCA 1504
             Y   L D  +  +       ++ A  PL     +    + R + +   + VQ+    C 
Sbjct: 1394 LYLHSLFDVDKAKKNQLRPIYDVKAPQPLASGQVDALAEQNRELFSSCQNVVQKYLSECG 1453

Query: 1505 YGWVKLNDI 1513
              +V +  I
Sbjct: 1454 RRYVNMGSI 1462



 Score = 40.4 bits (93), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 20  SARAEALERLKALRRGGRRSGDS-VGYNIKLENP-IYDTVAEDEYDALVARRREEARG-- 75
           S+RA   ++LK L+   R++G S + Y+   ++  IYD V E+ Y     R+R +     
Sbjct: 2   SSRASRRDKLKELKEA-RQAGSSLITYSDGEDDQGIYDEVDEETYRE---RKRNQMMNDD 57

Query: 76  FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDG 110
           FIVDD+G GY D G +E W  +  P    DE  +G
Sbjct: 58  FIVDDNGEGYVDNGVDE-WDDSTRPKYYSDEEEEG 91


>gi|3551068|dbj|BAA32745.1| DNA polymerase alpha 180K subunit [Drosophila melanogaster]
          Length = 1415

 Score =  560 bits (1443), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 382/1035 (36%), Positives = 564/1035 (54%), Gaps = 91/1035 (8%)

Query: 314  DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVV 373
            D+ +  +   E +  +  D  L  +  +A+E       G ++LFG+   G    S C+ V
Sbjct: 341  DDFEKSVLTTEQDSTISSDQQLRLWYWEAYEDPVKIP-GQVFLFGRTADGK---SVCLRV 396

Query: 374  KNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
            +N+ R +Y +P    F  D I K           P   +  + D+     +E+ANQL   
Sbjct: 397  QNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKLE 444

Query: 434  NVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP---ADLKGENFCSLLGTHS 490
               +  V+     +A G  E+P   +Y L+++Y   + PLP   AD K  +   + G  +
Sbjct: 445  FFRSRKVTKSFAHHAIG-IEVPQSCDY-LEVHYD-GNKPLPNLSADKKYNSIAHIFGATT 501

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
            +ALE FL+ RK+KGP WL ++ F   P P  +SWC  E+T+  PK++ +       A  P
Sbjct: 502  NALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 559

Query: 551  PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            P+T+ ++N++T  N +   NEI   S++  ++  ID P       +P    H   + +  
Sbjct: 560  PLTLLSLNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 614

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
               +P+  N E     +K  S  +    SERALL+  + +  K+D+D++V  +     L+
Sbjct: 615  VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 670

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
            V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    
Sbjct: 671  VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 715

Query: 731  SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
            + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    +
Sbjct: 716  AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 775

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHA   K YIVPDK       
Sbjct: 776  RLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHASTEKNYIVPDK------- 828

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
            K   +RS  G  DR    L+  DA            + K+  AYAGGLVLEP +GLY+KY
Sbjct: 829  KPVSKRSGAGDTDRT---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEKY 875

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMV 965
            +LL+D NSLYPSIIQEYNICF  V++  D   +P LP SKT  G+LP  LK LV+ R+ V
Sbjct: 876  VLLMDLNSLYPSIIQEYNICFNPVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKEV 935

Query: 966  KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GR+ L
Sbjct: 936  KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGRD-L 993

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
             +T  LVQ  +N +V+YGDTDS+MI++ I D  +   I   + Q VNK YK LE+D+DG+
Sbjct: 994  TNTQQLVQK-MNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDGV 1052

Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +  +LLLKKKKYAA+K+  KD  G      E KGLD+VRRDWS L+  VG   L ++LSE
Sbjct: 1053 FGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1111

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  E+ ++++H  L K++  +  G V L  +VITK LT+ P+ Y ++ + PHVQVALR+ 
Sbjct: 1112 KPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQDYRNSASLPHVQVALRMN 1171

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
            +   +     GD V    C +     G++    QRA H DELK   D K  +D +YY   
Sbjct: 1172 RE-RNRRYKKGDMVDLCDCLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1225

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM--SSDPSSSLLFAVGDEERY 1317
            QIHPVV+R+   +EGT   R+A+CLG+DP+KF+     T   +++ S          + Y
Sbjct: 1226 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTLQLY 1285

Query: 1318 RGCEPLILSCPSCSS 1332
            R CEP    C +C +
Sbjct: 1286 RLCEPFRFQCVTCKT 1300


>gi|366995475|ref|XP_003677501.1| hypothetical protein NCAS_0G02620 [Naumovozyma castellii CBS 4309]
 gi|342303370|emb|CCC71149.1| hypothetical protein NCAS_0G02620 [Naumovozyma castellii CBS 4309]
          Length = 1454

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 402/1145 (35%), Positives = 586/1145 (51%), Gaps = 134/1145 (11%)

Query: 352  GTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L LFGK++    +  S  + +  + R +Y +PN     TD   K  ++  E  I  + 
Sbjct: 348  NSLILFGKIRTNDGNLISGMLQINGLCRELYFLPN-----TD---KTPEEIHEEIIPLLL 399

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
             +  L D+                       P K +YAF    IP    Y LK+  PF+ 
Sbjct: 400  EKYGLHDIR--------------------AKPEKMKYAFELPGIPHESTY-LKVLLPFQT 438

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPAPQRVS 523
            P      +P DL  E F  + G +++  E F ++ K+ GP WL IS   F+S    Q  S
Sbjct: 439  PKSSNDLIPPDLSSETFNHVFGGNTNIFEAFAIQNKIMGPCWLEISNGDFNSL---QNSS 495

Query: 524  WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKA 583
             C  E++V  P+DI+V+ +       P +   ++ ++TV N +++  EIV+ ++   +  
Sbjct: 496  NCAVEVSVHKPQDIQVADNKT----TPDLKCISLAVQTVMNSKENKQEIVAITISTYNNL 551

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERAL 643
             +D+P+   E  +P  +   T+VR   G  FP G    AT    K    +    + E+ L
Sbjct: 552  SLDSPI--PEDLQPNDI--VTLVRPPHGEHFPPGL---ATLAGQKLKGKIRQF-NMEKPL 603

Query: 644  LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKG 703
            L      +  LD+DV++GH +    LDVL+HR     VP+  +S +GR  R   P     
Sbjct: 604  LACFCAMMKVLDADVIIGHRLENVYLDVLVHRMHDLNVPT--FSSVGRRSRKTWPDR--- 658

Query: 704  RTIFGSGASPG----IMSCIAGRLLCD---------TFLCSRDLLREVSYSLTQLAKTQL 750
               FG G        I    AGRLLCD         T  C    L E+     Q     L
Sbjct: 659  ---FGKGNQNMNHFYIRDLFAGRLLCDIGNEMGQSLTPKCQSWDLAEMYQVTCQHDHKPL 715

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
            + + +    HD + +     +L E I    T++ ++ E+ F + +L LT+QLTN++GN W
Sbjct: 716  DINYQNPQYHDDVNLLSM--ALQENI----TNSMIAAEVSFRIQMLSLTKQLTNLAGNAW 769

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             +TL G RA R EY+LLH F+   YIVPDK T     KM  QR     +++   E+    
Sbjct: 770  AQTLGGTRAGRNEYILLHEFKRNGYIVPDKET----NKMRSQRQQKKADEQGDGEVNTGA 825

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
            A+          +K K    Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTT
Sbjct: 826  AS----------KKAK----YQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 871

Query: 931  VERSPDGL--VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQA 986
            VER P+ +  +P +PS+    GVLP LL NLVQRRR VK  M T S   K  Q DI+QQA
Sbjct: 872  VERDPENIEELPEVPSTDIEQGVLPRLLANLVQRRREVKKIMATESDPHKRVQCDIRQQA 931

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
            LKLTANSMYGCLG+  SRFYAKPLA L+T +GREIL +T  L +N +NL V+YGDTDS+M
Sbjct: 932  LKLTANSMYGCLGYVYSRFYAKPLAMLVTNKGREILMNTRQLAEN-MNLLVVYGDTDSVM 990

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGM 1105
            I +G D+ A A  I     + VN +YK LEID+D ++K++LL  KKKYAA+ V   K+G 
Sbjct: 991  IDTGCDNYADAIKIGNNFKKLVNDRYKLLEIDIDNVFKKLLLHAKKKYAALNVSIDKEGK 1050

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
               V+E KGLDM RR++  LSK+V    L+ ILS++  E  ++ +++ L  V+  M + +
Sbjct: 1051 ERTVLEVKGLDMKRREFCPLSKDVSTHVLTTILSDKDPETALQEVYDYLENVKNKMENNE 1110

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            +  +KY I   L+K P+AYP  KN P VQVAL+++++G      AG  + ++I  ++ + 
Sbjct: 1111 IRADKYKINMKLSKDPKAYPGGKNMPAVQVALKMRKAGRVV--KAGSVITFVITKQEESE 1168

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
                +  A RA   +E+ K D     D +YY  +QI   V RL   IE     RL+  LG
Sbjct: 1169 DKEIIPAADRAYALNEVMKKDSNLKPDPEYYLEKQIFAPVDRLLERIESFDVVRLSAALG 1228

Query: 1286 LDPSKF----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
            LD  K+    ++      S D    L   + D ER+     L LSCP+C+  F    + +
Sbjct: 1229 LDSKKYLRRGENGGGTGNSIDSLQPLETTISDMERFAEVALLELSCPNCNIEFPFGGIIA 1288

Query: 1342 SICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
            S    +             +  L+C KC         +P  I++Q++      +S+YY G
Sbjct: 1289 SNYYQMC------------YNGLQCKKCEH-----MFTPLQISSQLESCIRSHISLYYAG 1331

Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL 1461
             + CDD TC   T  +++        G  C N   C G +  +Y++  LY QL YF  L 
Sbjct: 1332 WLTCDDSTCGNATRQISV-------FGKRCLN-DGCTGVMRYRYSDKQLYNQLLYFGSLF 1383

Query: 1462 DTQRG 1466
            D ++ 
Sbjct: 1384 DREKN 1388


>gi|260941119|ref|XP_002614726.1| hypothetical protein CLUG_05504 [Clavispora lusitaniae ATCC 42720]
 gi|238851912|gb|EEQ41376.1| hypothetical protein CLUG_05504 [Clavispora lusitaniae ATCC 42720]
          Length = 1431

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 406/1195 (33%), Positives = 594/1195 (49%), Gaps = 155/1195 (12%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV-KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
            V  D  L  + LD  E       G+L LFGKV     +  S  V V +M R +Y +P   
Sbjct: 305  VSSDDKLRMFWLDYAEA-----DGSLLLFGKVLTPEGSLVSAMVQVHDMCRELYVLP--- 356

Query: 388  LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
                              +SPM    +L  + +              +      P  R+Y
Sbjct: 357  ---------------RDNVSPMDVHAELVPILME----------QFGLERLRAKPETRKY 391

Query: 448  AFGQAEIPAGENYVLKINYPFKDPP-----LPADLKGENFCSLLGTHSSALELFLVKRKV 502
            AF   ++P    Y LK+  PFK        +P++L+GE F  + GT+++  E F+ +R +
Sbjct: 392  AFELPDVPKEAEY-LKVLLPFKTKKNQHVVMPSELEGETFRRIFGTNTNVFESFVTQRNI 450

Query: 503  KGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
             GP WL I + S C   Q  S C++E  + SP+ I   S   + +  P +T T+I+++TV
Sbjct: 451  MGPCWLDI-RTSGCSPLQNASHCQFEAAISSPECI---SPVTNGSPAPNLTTTSISVQTV 506

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
             N + +  E+V  S+        D+P+  +E  +P  L   T+VR + G  +P G  K A
Sbjct: 507  MNVKANRQEVVCVSLATYRDLPQDSPI--AENTQPNEL--VTLVRPV-GLNYPPGLQKAA 561

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
              +N     NV     +E++LL+ L   +   D D+LVGH +    LDVL+HR    +VP
Sbjct: 562  DAQNL----NVRLL-PNEKSLLSCLTALIKNADPDILVGHRLENISLDVLVHRMHDLKVP 616

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL 742
            +  WS +GR  R   P      + F +     I     GRLLCD       +  E+  SL
Sbjct: 617  T--WSTMGRRHRKSWPDKFGKSSAFSNNLL--IREIFQGRLLCD-------IANELGQSL 665

Query: 743  TQLAKT-----------QLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            T   ++             N    E+   +   M      LM L E   +   +S ++ F
Sbjct: 666  TPKCQSWDLSEMYNVVCHQNHPALEINFQNPRYMEDASFWLMPLKE-NVSQVLISAQISF 724

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L +L L++QLTN++GN W  TL G RA R E++LLH FR   YIVPDK     E K  K
Sbjct: 725  ALQILSLSKQLTNLAGNAWSHTLSGTRAGRNEFILLHEFRRNNYIVPDK-----EGKFHK 779

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
              S+   +D  +E      A  D+ T+   ++K    P Y GGLV EP+KGL+  YIL++
Sbjct: 780  NTSHQ--QDARIE------ATEDDATTVTSNKK----PKYQGGLVFEPEKGLHKNYILVM 827

Query: 912  DFNSLYPSIIQEYNICFTTVERSPDGL-------VPHLPSSKT-TGVLPELLKNLVQRRR 963
            DFNSLYPSIIQE+NICFTTVER            +P +P   +  GVLP LL  LV RRR
Sbjct: 828  DFNSLYPSIIQEFNICFTTVERDAYNTTHDEERDLPEIPERDSDQGVLPRLLNTLVSRRR 887

Query: 964  MVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             VK  +K    S  +  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREI
Sbjct: 888  EVKKLLKDPKISAAERAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREI 947

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            L  T  L + ++ L V+YGDTDS+MI +G   +A+A  I  +   +VN++YK LEID D 
Sbjct: 948  LMDTRQLAE-SIGLRVVYGDTDSVMIDTGATSMAEALKIGEEFKVQVNERYKLLEIDTDN 1006

Query: 1082 LYKRMLLLKKKKYAAVKVQF--KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            ++KR+LL  KKKYAA+ V    K G     +E KGLDM RR++  LSKE+  F L ++LS
Sbjct: 1007 VFKRLLLHAKKKYAAMNVTLDRKTGKEITSLEVKGLDMRRREYCSLSKEISTFVLEKLLS 1066

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +   E+ +  ++  L      +R+ +  ++KY I   L+K P +YP+ K  P VQVALRL
Sbjct: 1067 DIDPEEALSQVYGYLETTSAKIRANEFPVDKYSINTRLSKDPTSYPNGKTMPPVQVALRL 1126

Query: 1200 KQSGYSTGCSAGDTVPYIICC-EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            ++ G      AG  + +II   ++G  S S    A+RAR   E+      +  D +YY  
Sbjct: 1127 RKQG--KVVKAGSVITFIITAPKEGEESASP---AERARAIQEVLGDRTNFKPDSEYYLE 1181

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA-VGDEERY 1317
            +QI+  V RL   IEG    R+A  LG+D  K+  +   T  ++     L + + D ER+
Sbjct: 1182 KQIYAPVERLVNKIEGVDMLRIASSLGIDTKKYAMRLRNTEGAEHEILPLESNISDVERF 1241

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
            R     +L+C  C + F    + +S    V+            +  + C KC       R
Sbjct: 1242 RQASYFVLTC-KCGAKFRFGGIMASKDYKVT------------FNGVCCAKCDYVFPVLR 1288

Query: 1378 ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNY 1434
            ++     +Q++      +S+YY G ++CDD  C   T  +++   R IG + +       
Sbjct: 1289 LT-----SQLEAAIRKHLSLYYAGWLVCDDSACGIKTRQISVYGKRCIGASGKAH----- 1338

Query: 1435 PRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVV 1489
              C G +  KY++  LY QL YF  + D  +               + N++RP+V
Sbjct: 1339 -GCKGVMSYKYSDKALYNQLLYFDAIFDVSKA--------------QKNQLRPIV 1378



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARG--FI 77
           SAR   L++ K LR   RR+G  +  +   +  IYD V ED +      +R++     FI
Sbjct: 2   SARKAKLDKFKKLREA-RRTG-RIDASDDEDASIYDEVDEDTFRQ---HKRDQLMNDDFI 56

Query: 78  VDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGK 124
           VDD+G GY D G +E W  A  P+   DE  +   S K+ +  K  K
Sbjct: 57  VDDNGEGYVDNGVDE-WDDATRPNYYSDEEAEAGPSRKRSKTHKVAK 102


>gi|154335031|ref|XP_001563762.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134060784|emb|CAM37799.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1341

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 400/1106 (36%), Positives = 587/1106 (53%), Gaps = 149/1106 (13%)

Query: 337  FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
            FY  DA EQ    ++  G+L+LFGK+   K G T + SCCV V+NM R ++ +P     Q
Sbjct: 245  FYWFDAREQPHTLSVDPGSLFLFGKMVMEKNGRTSYPSCCVRVRNMYRSIFLLPREGSLQ 304

Query: 391  TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
             D +                  K++ D+             N  +    +  V+R YAF 
Sbjct: 305  EDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 335

Query: 451  QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
            +  +P  +    K+ YP + PPL A     +  +++G  SS LELFL+KRK+KGPS+L I
Sbjct: 336  EPGVPYEKTRWAKLRYPGRYPPLNAKGPLRHIQTIMGASSSLLELFLIKRKLKGPSFLRI 395

Query: 511  SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
            S  ++  +   +S C  E +VDSPK++RV  +       PP T+ +I +    + +   N
Sbjct: 396  SGLAA--SASHISHCTLEFSVDSPKNLRVEVAK---LPAPPFTLASIQIHAQLDDKGASN 450

Query: 571  EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
            EI  AS+       ID  +       P  +   T VR     + P+  + E    N+K  
Sbjct: 451  EIFIASIAIYKDVNIDNTI----RHIPDRI--LTGVRPASMYV-PLPIDLENYC-NAKGL 502

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
              V    ++ERALL+ L  +L  +D+D+++GHN  GF LD LL R Q   V S  WS IG
Sbjct: 503  PGVRRF-ANERALLDWLAEQLGNIDADIMIGHNFLGFTLDTLLRRYQELSVSS--WSTIG 559

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA-KTQ 749
            RL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L  LA + Q
Sbjct: 560  RLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLAHQMQ 614

Query: 750  LNKDRKEVGPHD----VLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            L    K     +    VL   M  +   + +++      A LS  ++ HL V+ LT++LT
Sbjct: 615  LQGITKGTNSFEPGTSVLTPAMLSSSRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLT 674

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +            
Sbjct: 675  TIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGRD----------- 721

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                            +D   GKR   Y GG+VL+PK GLY  YILLLDFNSLYPS+IQE
Sbjct: 722  ----------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQE 765

Query: 924  YNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQRRRMV 965
            +NICFTTV+R          P+ L+    S    G         VLP+++K+LV  RR V
Sbjct: 766  FNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVDSRREV 823

Query: 966  KTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            K  MKT   A+ L +  L+I+Q+ALKLTANSMYGCLGF  SRF+A+PLAEL+T+QGR  L
Sbjct: 824  KRLMKTEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLAL 881

Query: 1023 RSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
            +STVDL+ Q N +L VIYGDTDS+MI +GI +DI   + +   +  ++NK+Y+ LEID+D
Sbjct: 882  QSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDID 941

Query: 1081 GLYKRMLLLKKKKYAAVKV-QFKD-GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
            G+++ +LLLKKKKYAA+ V  ++D G  Y+  E KGLDMVRRDW  LSK V D  LS++L
Sbjct: 942  GVFRAILLLKKKKYAALTVTDWQDEGKTYKK-EVKGLDMVRRDWCPLSKRVSDSVLSRVL 1000

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
            +    ED+++ + N +  V   +R+G   L+ +VI+K+LTK PEAY    + PH  VALR
Sbjct: 1001 NAEGSEDILDYVMNYMRDVAGQVRNGCYTLDDFVISKSLTKEPEAY-RGNSFPHATVALR 1059

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ         GD +PY+IC        +   ++ +A H +E+++ + +  ID ++Y S
Sbjct: 1060 MKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSELHIDSEWYLS 1108

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
             QI+P V RLC  I+G S  +L++ +G+      K + + ++ M+    SSL  +   EE
Sbjct: 1109 AQIYPPVMRLCEHIQGFSNVQLSEAMGIACHTGPKLEEEEADMMNDFSHSSLFQSRNLEE 1168

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK-CPEEVE 1374
             +    PL + C  C      P    +  M V          +N +  + C K  P E  
Sbjct: 1169 CFPTALPLQVVCTHCR--LMTPINPHTRVMEVLSDAESQRDRFNLYVCVSCRKSLPVE-- 1224

Query: 1375 AGRISPGMIANQVKRQADGFVSMYYK 1400
                    +AN   +   G +  +Y+
Sbjct: 1225 -------YVANCFTQTCYGIIRQFYQ 1243


>gi|403217489|emb|CCK71983.1| hypothetical protein KNAG_0I01980 [Kazachstania naganishii CBS 8797]
          Length = 1464

 Score =  557 bits (1436), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 408/1179 (34%), Positives = 618/1179 (52%), Gaps = 130/1179 (11%)

Query: 352  GTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L L+GK KA   T  S  V +  + R +Y +P           K   D EE  I P+ 
Sbjct: 353  NSLVLYGKAKALDGTMVSAMVQINGLCRELYFLPRDG--------KSAADIEE-EILPLL 403

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
              K                     ++N    P  ++YAF   +IP  + Y LK+  P++ 
Sbjct: 404  MDK-------------------YGLNNIRAKPESKKYAFELPDIPHEKEY-LKVLLPYET 443

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            P      LP DL  +NF  + G +++ +E F+V+  V GP WL I K +   A Q  S C
Sbjct: 444  PKCSHDLLPPDLSSDNFSHVFGGNANIVESFVVQNNVMGPCWLEI-KNADFKALQNASHC 502

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
              E+ V SP+D++  ++S    +VP +   +I+++TV N + +  EIV+ ++   +   +
Sbjct: 503  AIEVAVASPRDVQPINTS----DVPELNGMSISIQTVMNSKVNKQEIVAITLSKYNNISL 558

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D P+   E  KP   S  T+VR   G  FP+G  K A  +        L   ++E+ LL+
Sbjct: 559  DKPI--PEDIKPE--SVVTLVRPPQGNNFPIGLAKLAQQK----LPGTLRLFNNEKTLLS 610

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
                 +   D DVL+GH +    LD+L+HR    ++P+  +S +GR  R   P  + G++
Sbjct: 611  CFCAMVKVADPDVLIGHRLETVYLDILVHRIHEFKIPT--FSALGRRVRKVWPD-KFGKS 667

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPH 760
               S  S  I   ++GRL+CD    + ++ + +     S+ L ++     NKD K +  +
Sbjct: 668  -HASMNSFFIRDLVSGRLICD---IANEMGQSLTPKCQSWDLREMYMVTCNKDHKTLDIN 723

Query: 761  DVLKMFQTLESLMEL-IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
                 +Q   S + + ++    ++ ++ E+ F + +L LT+QLTN++GN W +TL G RA
Sbjct: 724  YTDPRYQDDASNLNMALQENVANSMIAAEVSFRIQLLSLTKQLTNLAGNAWSQTLGGTRA 783

Query: 820  QRVEYLLLHAFRAKKYIVPDKFT--YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
             R EY+LLH F    YIVPDK T     + +M  QR+  G ED                T
Sbjct: 784  GRNEYILLHEFSKNGYIVPDKETQKMRNQRQMQMQRNEKGDEDTET-------------T 830

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG 937
            +    +K K    Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+   
Sbjct: 831  ALGSSKKAK----YQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNLQD 886

Query: 938  L--VPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANS 993
            +  +P +PS  K  GVLP LL NLV+RRR VK  MKT     K  Q DI+QQALKLTANS
Sbjct: 887  IDELPTVPSDDKNQGVLPRLLANLVERRREVKKVMKTEKDPHKYVQCDIRQQALKLTANS 946

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
            MYGCLG+ NSRFYAKPLA L+T +GRE+L +T  L +  + L V+YGDTDS+MI +G + 
Sbjct: 947  MYGCLGYVNSRFYAKPLAMLVTNKGREVLMNTRQLAET-MGLVVVYGDTDSVMIDTGCES 1005

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIER 1112
             A A  I     + VN++YK LEID+D ++K++LL  KKKYAA+ V   K G+ +  +E 
Sbjct: 1006 YADAIKIGENFKKLVNERYKLLEIDIDNVFKKLLLHAKKKYAALNVTINKAGVEHVKLEV 1065

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            KGLDM RR++S LSK+V    LS +LS++  E  ++ ++  L  ++  M + ++ ++KY 
Sbjct: 1066 KGLDMRRREFSPLSKDVSTHVLSTVLSDKDPETALQEVYEYLEDIKTKMENNEIRIDKYK 1125

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE--QGTSSGSSV 1230
            I   ++K P AYP  K  P VQVAL+++++G      AG+ + +II     +   SG   
Sbjct: 1126 INTKISKDPTAYPGGKTMPAVQVALKMRKAG--KLVKAGNVITFIITKPKLEDEKSGERS 1183

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
              A+RA   +++         D +YY  +QI   V RL   IEG    RL+  LGLD  K
Sbjct: 1184 HPAERAFALNDVMDKSNNLQPDPEYYLEKQIFSPVERLLERIEGFDVVRLSQALGLDSKK 1243

Query: 1291 FQSKPSETMSSDPSSSLL---FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSV 1347
            +  + S+  +   S+SL      + D ER++    L L CP+CS  F    V +S     
Sbjct: 1244 YLIRASDDANGHGSNSLQPLETTISDMERFKDSSNLELHCPNCSQQFVFGGVIAS----- 1298

Query: 1348 SEKPSKPETEYNFWRT----LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
                       NF++     L+C KC E +     +P  ++ Q++      +S+YY G +
Sbjct: 1299 -----------NFYQMCYNGLQCKKC-EHI----FTPIQLSCQLESIIRAHISLYYAGWL 1342

Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463
            +CDD TC   T  +++        G  C N   C G +  +Y++  LY QL YF  L D 
Sbjct: 1343 VCDDMTCGNVTRQISV-------FGKRCLN-EGCTGVMRYRYSDKQLYNQLLYFESLFDC 1394

Query: 1464 QRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
             +  +K E+ A   +  E +K  P   L+ S+V  + E+
Sbjct: 1395 AKN-KKQELKA---VYYEGDKDYPKEKLSESSVMVLTEQ 1429



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 19 ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREE--ARGF 76
          +S + E L +L+A RRG +  G S   +   +  +YD V E+EY     R+R+E     F
Sbjct: 2  SSDKLEKLRKLQAARRGKQDHGYSHSSDEDNDVQLYDEVDENEYKK---RKRQELLQDDF 58

Query: 77 IVDDDGLGYGDEGQEE 92
          +VDDDG GY D G EE
Sbjct: 59 VVDDDGEGYIDRGVEE 74


>gi|444315684|ref|XP_004178499.1| hypothetical protein TBLA_0B01370 [Tetrapisispora blattae CBS 6284]
 gi|387511539|emb|CCH58980.1| hypothetical protein TBLA_0B01370 [Tetrapisispora blattae CBS 6284]
          Length = 1486

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 403/1174 (34%), Positives = 615/1174 (52%), Gaps = 126/1174 (10%)

Query: 352  GTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L LFGKVK    T  S  + + N+ R ++ +P           K  +D  E  I P+ 
Sbjct: 381  NSLILFGKVKTHDGTLVSAMLQINNLNRELFFLPREG--------KTPEDVHE-EIIPLL 431

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
              K       GL T  A              P +++Y F   +IP  E Y LK+  P+K 
Sbjct: 432  MDK------YGLDTIRA-------------KPERKKYCFEIPDIPT-ETYYLKVLLPYKP 471

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
            P      +PA+L  + F  + G +++  E F+++ KV GP WL + K     A Q  S C
Sbjct: 472  PKSSNDLIPAELSSDTFYHVFGGNTNIFESFVIQNKVMGPCWLKV-KNGDFNALQNASHC 530

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            + EI V++PKDI V    K + ++  V+++   L+TV N + +  EIVS ++       I
Sbjct: 531  QLEIVVNNPKDI-VPIDLKDMIDLDCVSLS---LQTVLNAKANKQEIVSITLSTYKNIAI 586

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D+P+   E   P      T++R   G  FP+G    AT    K  S  L   ++E+ +L 
Sbjct: 587  DSPI--PEDIVPN--DTVTLIRPPVGSSFPLGL---ATLGKEKLQSQ-LRLFNNEKTMLM 638

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
                 +  LD DV++GH +    LDVL HR    +VP+  +S +GR  R + P  R G+ 
Sbjct: 639  CFAAMMKVLDPDVIIGHRLETLTLDVLSHRLNDLKVPT--FSSLGRRVRKDWPP-RFGKN 695

Query: 706  IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPH 760
              G   S  +    +GRLLCD    S ++ + +     S+ L ++      +  K +  +
Sbjct: 696  -NGGMNSFLVRDICSGRLLCD---ISNEMGQSLTPKCQSWDLAEMYNITCGRQHKSLDIN 751

Query: 761  DVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
               K +Q  + S++  I+   T++ L+ E+ F + +L LT+QLT ++GN W +TL G RA
Sbjct: 752  YQNKQYQEDVNSMLMAIQENITNSILASEVSFRIQLLSLTKQLTTLAGNAWSQTLGGTRA 811

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
             R EY+LLH F    YI+PDK +  ++ +  +Q ++    D N+  ++N+ A        
Sbjct: 812  GRNEYILLHEFSRNNYILPDKESNRQKAQRRQQIADTE-GDSNLPPVSNKKA-------- 862

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL- 938
                       Y GGLV EP+KGL+  YIL++DFNSLYPSIIQE+NICFTTV+R+ + + 
Sbjct: 863  ----------KYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVDRNLNDID 912

Query: 939  -VPHLPSS-KTTGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMY 995
             +P +P+S K  GVLP LL  LVQRRR VK  M + + L K  Q DI+QQALKLTANSMY
Sbjct: 913  ELPEVPASNKAQGVLPRLLATLVQRRREVKKVMASETDLHKKVQCDIRQQALKLTANSMY 972

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            GCLG++NSRFYAKPLA L T +GREIL +T  L ++ L L V+YGDTDS+MI +G D+  
Sbjct: 973  GCLGYNNSRFYAKPLAMLTTNKGREILMNTRQLAES-LELAVVYGDTDSVMIDTGCDNYN 1031

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKG 1114
             A  I     + VN++Y+ LEID+D ++K++LL  KKKYAA+ V   K G     +E KG
Sbjct: 1032 NAIKIGQDFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNVIIDKQGNESTTLEVKG 1091

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            LDM RR++  LSKEV    L+ +LS++  E  +  I+  L + + ++ +  + ++KY I 
Sbjct: 1092 LDMKRREYCPLSKEVSIHVLNTVLSDKDSETALSEIYEYLERTRNNVENNDIRIDKYKIN 1151

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              L+K P +YP+ K  P VQVAL+++++G      AG  + +II       S      A 
Sbjct: 1152 TKLSKDPNSYPNKKTMPAVQVALKMRKAGRVV--KAGSVITFIITKGNSDESEQDSHYAD 1209

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
            RA   +E+       + D  YY  +QI   V RL  +IE     RL+  LGLD  KF  +
Sbjct: 1210 RAYALNEVMNKSNNLVPDPTYYLEKQIFSPVERLLENIESFDIVRLSTSLGLDSKKFLRR 1269

Query: 1295 PSETMSS---DPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKP 1351
            P++++S    D    L   V D ER++    L L+CP+C++ F    + +S   ++    
Sbjct: 1270 PADSLSGNGIDTLQPLETTVADIERFKDSSALELTCPNCANKFLFGGIIASNFYTMC--- 1326

Query: 1352 SKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCK 1411
                     +  L+C  C E +     SP  I +Q++R     +S+YY G ++CDD+TC 
Sbjct: 1327 ---------YNGLQCKNC-EHI----FSPLQITSQLERCIRSHISLYYAGWLVCDDKTCG 1372

Query: 1412 YTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIE 1468
              T  +++   R + D            C G +  KY++  LY QL YF  L D ++   
Sbjct: 1373 TVTRQISVFGKRCLSDG-----------CTGVMRYKYSDKKLYNQLLYFDSLFDCEKNKN 1421

Query: 1469 KMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
            ++      PL    +   P+ +L  S+++ + E+
Sbjct: 1422 QL----LKPLYHSGDIDYPISSLNESSIKVLSEQ 1451



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREE--ARGFI 77
           + + E L++L+ALR            +I  +N IYD + E EY     R+R+E     F+
Sbjct: 5   NGKLEKLKKLQALRNAKNSQNQHSNDDIN-DNKIYDEIDEIEYRN---RKRQELLHDDFV 60

Query: 78  VDDDGLGYGDEG--QEEDWSVAGLPSSSDDES 107
           +DDDG GY D G   EE+   +   S  DDE+
Sbjct: 61  IDDDGKGYVDRGIEDEENGYYSDELSEEDDET 92


>gi|410078800|ref|XP_003956981.1| hypothetical protein KAFR_0D01990 [Kazachstania africana CBS 2517]
 gi|372463566|emb|CCF57846.1| hypothetical protein KAFR_0D01990 [Kazachstania africana CBS 2517]
          Length = 1449

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 400/1186 (33%), Positives = 612/1186 (51%), Gaps = 149/1186 (12%)

Query: 352  GTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410
             +L LFGKVKA   +  S  V +  + R ++ +P        E     +  EE  I P+ 
Sbjct: 343  NSLILFGKVKANDGNLVSAMVQINELNRELFFLPR-------EGHSAAEIHEE--IIPLL 393

Query: 411  FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD 470
              K                     ++N    P K +YAF   +IP    Y LK+  PF  
Sbjct: 394  MEK-------------------YGLANIRAKPQKMKYAFELPDIPHETEY-LKVLLPFNC 433

Query: 471  PP-----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPAPQRVS 523
            P      +P DL  E F  + G +S+  E F+V+ K+ GP WL I    FSS    +  S
Sbjct: 434  PKNSNDLIPPDLCSETFSHVFGGNSNIFESFVVQNKIMGPCWLEIKNGDFSSL---KNAS 490

Query: 524  WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKA 583
             C  E+ VD  ++I+V    K +  +  V++    ++T+ N  ++  EIVS ++      
Sbjct: 491  NCSSEVAVDI-QNIKVIEK-KAICNLKCVSLA---VQTMMNPVENKQEIVSITLSTYKTI 545

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERAL 643
             +++P +  + K   ++   T+VR L+   FP+GF   A  +        L   ++E++L
Sbjct: 546  SLESP-IPEDIKADEVV---TLVRPLEDSGFPVGFGSLAKQKLPGE----LRIFNNEKSL 597

Query: 644  LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKG 703
            L+     +  +D+DVL+GH +    LDVL+HR    +VP+  +S +GR  R E P     
Sbjct: 598  LSCFCAMMKVMDADVLIGHRLESVYLDVLVHRLYDLKVPT--FSSLGRRTRKEWP----- 650

Query: 704  RTIFGSGASP----GIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDR 754
               FG   S          +AGRL+CD      ++ + +     S+ L ++ K   +KD 
Sbjct: 651  -NNFGRSQSSLNRFFTQELVAGRLVCD---IGNEMGQSLTPKCQSWDLAEMYKVTCDKDH 706

Query: 755  KEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            K +  +     +++ + S++   +   T+++++ E+ F + +L LT+QLTN++GN W +T
Sbjct: 707  KSLDINFQNPQYRSEVNSMVMAFQENITNSFIAAEVSFRIQLLSLTKQLTNLAGNAWSQT 766

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G R+ R EY+LLH F    Y+VPDK +    T+  K+ S                AN 
Sbjct: 767  LGGTRSLRNEYILLHEFARNGYVVPDKESRQARTQRMKKNS----------------AND 810

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
             +DT+ +   K      Y GGLV +P+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R
Sbjct: 811  ADDTAPSSKAK------YQGGLVFDPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVQR 864

Query: 934  SPDGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKL 989
            +   +  +P +P      GVLP LL NLV RRR VK  MKT     K+ Q DI+QQALKL
Sbjct: 865  NLHDINEMPEVPGEDNVQGVLPRLLANLVARRREVKKIMKTEMDPHKLAQCDIRQQALKL 924

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L + ++NL V+YGDTDS+MI +
Sbjct: 925  TANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAE-SMNLLVVYGDTDSVMIDT 983

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYE 1108
            G D  A A  I     + VN++YK LEID+D ++KR+LL  KKKYAA+ V   K G    
Sbjct: 984  GCDSYADAIKIGQNFKRLVNERYKLLEIDIDNVFKRLLLHAKKKYAALNVSIDKAGNENT 1043

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
            V+E KGLDM RR++  LSK+V  + LS +LS++  E  ++ I+  L +++  + + Q+  
Sbjct: 1044 VLEVKGLDMKRREFCPLSKDVSTYVLSHLLSDKDPETALQEIYAYLEEIKSKVENNQIRA 1103

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC-----CEQG 1223
            +KY I   L+K P AYP AK  P VQVAL+++++G      AG  + ++I         G
Sbjct: 1104 DKYKINTKLSKDPSAYPGAKTMPAVQVALKMRKAGRVV--KAGSVITFVITKQNDGANDG 1161

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
               G ++  A+RA   +E+       + D DYY  +QI   V RL   IEG    RL++ 
Sbjct: 1162 KKDGETMHFAERAYALNEVMIKSNNLVPDPDYYLEKQIFSPVERLLERIEGFDVVRLSNA 1221

Query: 1284 LGLDPSKFQSKPSETMSSDPSSSLL---FAVGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LGL+  KF  + ++ ++ +  ++L      + D ER+     L LSCP CS  F    + 
Sbjct: 1222 LGLESKKFLKRYNDDVTGNSINNLQPLETTISDVERFATSAILELSCPMCSKQFPFGGIV 1281

Query: 1341 SSICMSVSEKPSKPETEYNFWRT----LRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
            +S                N+++     ++C  C        +SP  +  Q++      +S
Sbjct: 1282 AS----------------NYYKMCFNGIQCKGCDH-----ILSPIQLTAQLEATIRVHIS 1320

Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
            +YY G ++CDD  C   T  +++        G  C N   C G +  KY++  LY QL Y
Sbjct: 1321 LYYAGWLICDDLACGTVTRQMSV-------FGKRCLN-EGCTGVMRYKYSDKQLYNQLLY 1372

Query: 1457 FCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
            F  L D    IEK +     P+  + +   P  AL  S+++ + E+
Sbjct: 1373 FDSLFD----IEKNKKEELKPIYHDGDMDFPNEALTESSIRALAEQ 1414



 Score = 43.5 bits (101), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 19 ASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIV 78
          +S +   L++L+A R+G   + +S       +  +YD V E +Y  L  R++     FIV
Sbjct: 2  SSDKLAKLKKLQAARKGKAETTNSTSDEEDFDR-VYDEVDEKQYLDL-KRKQLLQDDFIV 59

Query: 79 DDDGLGYGDEGQEED 93
          DDDG+GY D G E+D
Sbjct: 60 DDDGVGYVDRGVEDD 74


>gi|448521819|ref|XP_003868577.1| Pol1 DNA directed DNA polymerase alpha [Candida orthopsilosis Co
            90-125]
 gi|380352917|emb|CCG25673.1| Pol1 DNA directed DNA polymerase alpha [Candida orthopsilosis]
          Length = 1449

 Score =  555 bits (1429), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 394/1208 (32%), Positives = 595/1208 (49%), Gaps = 142/1208 (11%)

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLFQT 391
            GS   + LD  E        +L LFGK++      +  VV V  + R +Y +P       
Sbjct: 312  GSFKMFWLDYAEV-----ENSLLLFGKIQTKDGKVASGVVQVNGLCRELYILPKVN---- 362

Query: 392  DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ 451
                  E   +  R S    R+++  + +           N  +      P  ++YAF  
Sbjct: 363  ------EGSGKNERFSTDDVREEITPIFMD----------NYKLETLRAKPETKKYAFEL 406

Query: 452  AEIPAGENYVLKINYPFKDPP----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            A IP    Y LK+  P+        LPAD +GE F  + GT+++  E F+ +R + GP W
Sbjct: 407  ANIPKEIEY-LKVLLPYNTATNRRVLPADTEGETFNHIFGTNANMFESFVTQRNIMGPCW 465

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L I       A +  S C+ E+ V SP  I V   S   A  P +T T+I+++TV N +Q
Sbjct: 466  LEIQG-GDFDAIRNSSHCQIEVAVASPGKISVVDKSPPPA--PNLTCTSISVQTVMNPKQ 522

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
            +  E+VS S+   +    D P+   E  KP  +   T  R +    FP G  + AT    
Sbjct: 523  NKQEVVSVSLATYYNLPQDAPI--PEDLKPDDI--ITFARPVGTVSFPPGMTQLAT---- 574

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K    +  C  +E+ LLN +  ++  +D D+ VGH +    LDVL+HR    +V  + WS
Sbjct: 575  KEQFELRTC-PNEKVLLNAVAAKIKTIDPDIFVGHRLENISLDVLVHRMHDNQV--TTWS 631

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
             +GR  R + P         GSG +  ++      GRLLCD       +  E+  SLT  
Sbjct: 632  TLGRRNRKQWPHAINKH---GSGFNNNLLIREVFRGRLLCD-------IANEMGQSLTSK 681

Query: 746  AKTQLNKDRKEV---GPHDVL-------KMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
             ++    +  +V     H+ L       + F+     M  ++  E +  ++ E+ F   +
Sbjct: 682  CQSWDLVEMYDVVCHKKHNALDINYQNPRFFEDATLFMLALKENEVNVKIASEVAFATQI 741

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            L L++QLTNI+GN W  TL G RA R EY+LLH FR   YIVPDK     +    +Q + 
Sbjct: 742  LSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFRRNNYIVPDKEDSTHKNTSFQQEA- 800

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                     +L N D +    TS+       + P Y GGLV EP+KGL+  YIL++DFNS
Sbjct: 801  ---------QLENADEDVQTATSN-------KKPKYQGGLVFEPEKGLHKNYILVMDFNS 844

Query: 916  LYPSIIQEYNICFTTVERS-------PDGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKT 967
            LYPSIIQEYNICFTTV+R+        D  +P +P + +  GVLP LL  LV RRR VK 
Sbjct: 845  LYPSIIQEYNICFTTVDRARFNTTHNEDKDMPLIPDNDSERGVLPRLLNTLVTRRREVKK 904

Query: 968  WMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
             +K       Q  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T
Sbjct: 905  LLKDPKNTPFQRAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDT 964

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085
              L + +  L V+YGDTDS+MI +G   + +A         +VN++Y+ LEID+D ++KR
Sbjct: 965  RQLAEAS-GLRVVYGDTDSVMIDTGAQSLKEAIKFGEDFKLQVNERYRMLEIDIDNVFKR 1023

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEV--IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
            +LL  KKKYAA+ V        EV  +E KGLDM RR++  LSK++  F L +ILS+   
Sbjct: 1024 LLLHAKKKYAAMNVSVNKATGEEVSTLEVKGLDMRRREYCQLSKDISTFVLMKILSDSDP 1083

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            E+ ++ +++ L ++++ +   ++ ++++ I   L+K P  YP+ K+ P V VALRLK  G
Sbjct: 1084 EEALQDVYSYLEEMRDKILRNEIPVDRFKINTKLSKDPNNYPNGKSMPQVSVALRLKNEG 1143

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
                  AG  + Y++      +  S+V  A+RAR   EL         D  +Y  +QI  
Sbjct: 1144 --KVIKAGSVISYVVTAPTNETDKSTV--AERARALQELLSKKLDLKPDPMFYLEKQIFA 1199

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPL 1323
             V RL   I+     R+A  LG+D  ++  K      +   +S+   + D+ER+R    L
Sbjct: 1200 PVERLLDKIDSVDMMRVATSLGIDTKRYILKVKNEGFNGEIASIESNISDDERFRQSSYL 1259

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
            +L C +C   F    + SS    V+            +  + C +C       +++  + 
Sbjct: 1260 VLKC-NCGHVFRYGGIQSSNDYKVT------------FNGVTCKRCDYTFPTIKLTAQLE 1306

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGR 1440
            A   K      +++YY G ++CDD +C   T  +++   R IG + +G        C G 
Sbjct: 1307 ATIRKH-----IALYYCGWLVCDDNSCGIETRQISVYGKRCIGTSGKGL------DCRGV 1355

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIR 1500
            +  +YT+  LY QL YF  + D ++               +  K+RP+V    ++    +
Sbjct: 1356 MRYRYTDKALYNQLLYFNSIFDVEK--------------TKAGKLRPIVDALETSGSEEQ 1401

Query: 1501 ERCAYGWV 1508
            ++ A G V
Sbjct: 1402 QKLAQGQV 1409


>gi|255726188|ref|XP_002548020.1| DNA polymerase alpha catalytic subunit [Candida tropicalis MYA-3404]
 gi|240133944|gb|EER33499.1| DNA polymerase alpha catalytic subunit [Candida tropicalis MYA-3404]
          Length = 1473

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 394/1151 (34%), Positives = 599/1151 (52%), Gaps = 129/1151 (11%)

Query: 353  TLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP-NGPLFQTDEIMKLEKDAEESRISPM 409
            +L LFGK+  K G    S  V V+ + R +Y +P + PL   +E      D  E+ ++P 
Sbjct: 343  SLLLFGKIMTKEGGLI-SGVVKVEGLCRELYILPRDHPLVDGEE------DQNET-VTPA 394

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
               +++  V L           N  + +    P +++YAF  A+IP    Y LK+  PF 
Sbjct: 395  DVLEEINPVLLS----------NYKLDSIRAKPERKKYAFELADIPKEAEY-LKVLLPFS 443

Query: 470  DPP----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWC 525
                   +P++++G  F  + GT+++  E F+ +R + GP WL I K     A Q  S C
Sbjct: 444  AETNKNIMPSNIEGRTFRHIFGTNTNMFEAFVTQRNIMGPCWLEI-KNGDFRAMQNASHC 502

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI 585
            + E+ V SP +I      K+    P +TVTAI+++TV N + +  E+V+ S+        
Sbjct: 503  QAEVVVRSPGNI--VPIDKNAPPPPNLTVTAISVQTVMNTKSNKQEVVAVSLATYFDLPQ 560

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
            D P+  SE  KP  +   T+ R +    FP G  + A     K G  +  C  +E+ LLN
Sbjct: 561  DAPI--SESIKPNDI--LTLARPVGVVSFPPGLQQLA----DKEGFQLRTC-PNEKVLLN 611

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL-RKGR 704
             L  ++  LD DV +GH +    LDVL+HR    +V +  WS +GR  R + P +  K  
Sbjct: 612  ALAAKIKSLDPDVYIGHRLENISLDVLVHRMNENKVMT--WSALGRRSRKQWPYMINKHN 669

Query: 705  TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV------G 758
            + + +  S  +     GRLLCD       +  E+  SLT   ++    +  +V      G
Sbjct: 670  SSYNN--SLLVRDVFQGRLLCD-------IANEMGQSLTMKCQSWDLHEMYDVVCHKKHG 720

Query: 759  PHDV----LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            P ++    +K  +     +  ++  E +   + E+ F + +L L++QLTNI+GN W  TL
Sbjct: 721  PVEINYQNIKYAEDAFFFLMALKENEFNVRQTAEIAFGIQILSLSKQLTNIAGNAWSHTL 780

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             G RA R EY+LLH F+   YIVPDK     E K  K  S         +E   E+A  D
Sbjct: 781  SGTRAGRNEYILLHEFKRNNYIVPDK-----EDKTHKNTSYQ-------QEARLENAEED 828

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
              T+ ++ +     P Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R 
Sbjct: 829  ATTATSNKK-----PKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRD 883

Query: 935  PDGL-------VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQ 984
               +       +P LP  ++  GVLP LL  LV RRR VK  +K       Q  Q DI+Q
Sbjct: 884  RFNMTHDENKDMPILPEKESAPGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYDIKQ 943

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            QALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL  T  L +++ +L V+YGDTDS
Sbjct: 944  QALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESS-SLRVVYGDTDS 1002

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF--K 1102
            +MI +G +   +A  I  +   +VN++Y+ LEID+D ++KR+LL  KKKYAA+       
Sbjct: 1003 VMIDTGANSFKEAIKIGEEFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNASIDRA 1062

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
             G     +E KGLDM RR++  LSK++  + L +ILS+   E  +  ++N L +++  ++
Sbjct: 1063 TGEESTTLEVKGLDMRRREYCQLSKDISTYVLMKILSDSDPEAALIDVYNYLEEMKNKIQ 1122

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            + ++ +++Y I   L+K P++YP+ K+ P VQVAL+L++ G      AG  + Y I   Q
Sbjct: 1123 NNEIPVDRYKINTKLSKDPKSYPNGKSMPQVQVALKLREQG--KVIKAGSVITYAITAPQ 1180

Query: 1223 GTSSGSSVGIAQRARHPDE-LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                 S+   A+RAR   E L K +     D  YY  +QI   V RL   IEG    R+A
Sbjct: 1181 NEEDKSTP--AERARSIQELLSKKNPNLKPDPTYYLEKQIFAPVERLLERIEGIDMVRVA 1238

Query: 1282 DCLGLDPSKF--QSKPSETMSSD--PSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCP 1337
              LG+D  ++  + K SE  + +  P  S   ++ D ER+R    L+L+C  C  +F   
Sbjct: 1239 SSLGIDTKRYILRVKNSEGANGEILPMES---SIPDSERFRTSSYLVLNC-KCGHSFRFG 1294

Query: 1338 AVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSM 1397
             + +S           P+ +  F   + C KC  E     I    + +Q++      +++
Sbjct: 1295 GILAS-----------PDYKVTF-NGVCCQKC--EYTFPEIK---LTSQLESMIRKHIAL 1337

Query: 1398 YYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQL 1454
            YY G ++CDD  C  TT  +++   R IG + +         C G +  +Y++  LY QL
Sbjct: 1338 YYAGWLVCDDPACGITTRQISVYGKRCIGASGKAM------DCKGMMRYRYSDKQLYNQL 1391

Query: 1455 TYFCHLLDTQR 1465
             YF  + D  +
Sbjct: 1392 LYFNSIFDVDK 1402


>gi|159481277|ref|XP_001698708.1| DNA polymerase alpha subunit one [Chlamydomonas reinhardtii]
 gi|158273602|gb|EDO99390.1| DNA polymerase alpha subunit one [Chlamydomonas reinhardtii]
          Length = 1114

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 411/1214 (33%), Positives = 581/1214 (47%), Gaps = 318/1214 (26%)

Query: 333  GSLPFYILDAHEQLSGANMGTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            G LPFY+LDA+E    A  G + LFGK++A G    SC V V+ +QR +  +P   +F+ 
Sbjct: 113  GVLPFYLLDAYEN-PDARPGEVVLFGKIEAEGGRWQSCAVAVRGLQRTLIVVPRREVFED 171

Query: 392  DE----IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
             +     M     A+ +R                 K E+   L   + +  +     + Y
Sbjct: 172  GDGAIVAMHAAVKADPAR-----------------KPELMKMLQMWSAAGGVFLEGIKFY 214

Query: 448  AFGQAEIPAGENYVLKINYPFK----DPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            AF   ++P GE +V+K+ YP       PP      G+ +C++ G + S LE     R++K
Sbjct: 215  AFENRDVPHGEQWVIKVRYPGHLPVLQPPASGCFSGKTYCAIFGANQSTLE-----RRIK 269

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP W+ I   +      + +WCK E+                                  
Sbjct: 270  GPGWMGICSPTRVEYGNQTTWCKVEVA--------------------------------- 296

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA- 622
                  +EIV+ASVV       D P+ A +W  P  L  F++VR+LDG  +P G    A 
Sbjct: 297  ------HEIVAASVVHLSGVSPDAPLAAKDWSNPQRLRSFSIVRRLDGQAWPAGMEAAAA 350

Query: 623  ----TDR---NSKAGSN---VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
                T R   NS AG+    ++  + SER+LL  L+  L  LD+DVLVGHN++ FDL  L
Sbjct: 351  AENATPRGRANSGAGNANGPLVALQGSERSLLTCLLARLQSLDADVLVGHNVAAFDLTTL 410

Query: 673  LHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
            L R Q  +VP  +WS+IGR+K++E P+L  G   FG GA  G+M+ +AGRL+CDT+L +R
Sbjct: 411  LSRMQHHKVP--LWSRIGRVKKTEFPRLTGGGHTFGGGAGAGVMATVAGRLMCDTYLSAR 468

Query: 733  DLLREVSYSLTQLAKTQLNKDRKE------VGPHDVLKM-FQTLESLMELIEYGETDAWL 785
            +L++ V ++L  LA++ L + R +       G +  L   F + E ++ L+ +GE+DAWL
Sbjct: 469  ELVKSVDFTLGTLAQSLLGQQRSDPLAGSNAGNNSGLGACFGSAEGVLRLLRHGESDAWL 528

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            ++ +MFHLSVLPLT+QL+ +SG LW +TL G RA R+E LLLH F ++K+IVPDK +Y  
Sbjct: 529  ALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEFHSRKFIVPDKQSY-- 586

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
            ++K A                           S N       GP YAGGLVLEPKKGLYD
Sbjct: 587  KSKAA--------------------------PSGN-------GPKYAGGLVLEPKKGLYD 613

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMV 965
            K +++LD           +N  + ++                                  
Sbjct: 614  KIVIILD-----------FNSLYPSI---------------------------------- 628

Query: 966  KTWMKTASGLKIQQLDI-QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
                       IQ+ +I    A+KLTANSMYGCLGF  SRFYA+PLAELIT QGR IL S
Sbjct: 629  -----------IQEYNICFTTAIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSS 677

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            TVDL                           +A+A+  ++ +EVNK+YK LEI+LDG++K
Sbjct: 678  TVDL---------------------------EARALGARIKREVNKRYKLLEIELDGVFK 710

Query: 1085 RMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
             +LLLKKKKYAAVK++    G   EV+E+KGLD+VRRDW  LSK+VG+F L+ +LS R  
Sbjct: 711  SILLLKKKKYAAVKLEPDGQGRLAEVMEQKGLDIVRRDWCPLSKDVGNFALAAVLSGRGR 770

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            E+VV  IH  L +V E +R+GQ+ + K++ITK LTK PE YPDAKNQPHVQVA+R + +G
Sbjct: 771  EEVVGEIHAHLRQVAERVRAGQIPMGKFIITKQLTKRPEDYPDAKNQPHVQVAMRRRAAG 830

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
               G      +P                                             IHP
Sbjct: 831  KRDG-----VLP---------------------------------------------IHP 840

Query: 1264 VVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPL 1323
            VVSRL + IEGT    +ADCLGLDP++  +   E                +E +R C PL
Sbjct: 841  VVSRLVSPIEGTDAAHIADCLGLDPARGGTLMDE----------------DENFRSCGPL 884

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383
            +L+ PS  + F    V       V ++   PE        L  P          +SP  +
Sbjct: 885  LLTSPS-GACFPLRGV-----DDVLKEAIMPE-------QLLTPPDALGDPTATVSPAAL 931

Query: 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR 1443
             NQV  +A   V+ YY G++  DDET              DA  G        C   L  
Sbjct: 932  INQVLLRAREAVARYYDGVLRPDDETA-------------DAGPGG-------CRAALSH 971

Query: 1444 KYTEADLYKQL-TYFCHL--LDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIR 1500
             Y    +      + C L   D + G+   ++ AK+P       +   +  AA  +  +R
Sbjct: 972  YYRLLHVEGAARRHHCRLRAADPKSGVSLDDVRAKVP-----ESLARTLGAAAEALDGLR 1026

Query: 1501 ERCAYGWVKLNDIA 1514
             R  + W  L  +A
Sbjct: 1027 RRSHWHWRMLYVVA 1040



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 4/83 (4%)

Query: 11 RRRSRGAEASARAE-ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARR 69
          RR+   + A+ +A+ ALE+L+A R GG +   ++ Y +K E  +YD V E +Y  +V +R
Sbjct: 5  RRQPVQSSAAVKAKGALEQLRAARDGGLKR--ALAYEVKEEAAVYDVVDEQQYAEIVKKR 62

Query: 70 REEARGFIVDDDGLGYGDEGQEE 92
          R+ A  F+VDDDG GY D G+++
Sbjct: 63 RD-AGDFVVDDDGAGYHDIGEDD 84


>gi|391331432|ref|XP_003740150.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Metaseiulus
            occidentalis]
          Length = 1500

 Score =  551 bits (1419), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 377/1031 (36%), Positives = 554/1031 (53%), Gaps = 109/1031 (10%)

Query: 332  DGSLPF--YILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLF 389
            DG   F  + LDA+E+   A+ GT+Y+FGK    ++  S  +VVKN+ R ++ +P     
Sbjct: 369  DGETVFRLFWLDAYEE-PYAHPGTVYVFGKTTVSNSSVSAAIVVKNIPRKLFFLPR---- 423

Query: 390  QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF 449
                    E++ E   + P+ F+    +V   LK           +  +     ++ + F
Sbjct: 424  --------ERENENGMMCPIPFKSVYDEVKEVLKQH--------GIKEFRCKESEKMFVF 467

Query: 450  GQAEIPAGENYVLKINY-PFKD-PPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
                +P   NY L++ Y P K    LP DL G+ F  + GT +S+LE  ++ RK+KGPSW
Sbjct: 468  ATQGVPRKANY-LEVQYNPAKAMKTLPGDLSGQTFSKVFGTSTSSLEALILDRKLKGPSW 526

Query: 508  LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
            L + +  S  A    + CK+EI     K+I VSS     A  P +++  +  + V N++ 
Sbjct: 527  LDVKQPES--AHLHNTTCKFEIDCQDLKNISVSSVQ---AGPPALSILTLQARAVRNEKN 581

Query: 568  DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
              +E+V  + +      +  P  A  + +     HF  V        P  F KE      
Sbjct: 582  SRDEVVMVAGLVHDDYPLTKPPPAKLFTQ-----HFCFVTTSSDRSLPYDFKKELASERI 636

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K    +  CE+ ER L+++L  ++ K D D++VGH+ S F L  +L   +  ++     S
Sbjct: 637  K----IKPCEN-ERMLISQLNSQMTKCDPDIIVGHDASSFTLPAILTAMERHKIVKP--S 689

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
             + RL RS +  +   +              + GR++CDT L +++L++  SY L+ L  
Sbjct: 690  ALSRLCRSNIQSVNVSKL--------DRTQLLPGRVICDTKLSAKELIQAKSYELSDLVS 741

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
              LN +  E+      +M     SL  L ++   ++   ++L+  L++LPL  Q+T I G
Sbjct: 742  DVLNANHDEISADAFKEMLSRTPSLKVLCKHIMHESQFVIKLLAELNILPLASQITTICG 801

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N   +TLQ  RA R EYLLLHAF +K +IVPD     KE++ A+++              
Sbjct: 802  NTLTQTLQKGRALRNEYLLLHAFTSKNFIVPD-----KESRRAQKKKQQ----------- 845

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                   N+         K+GPAY+GGLVL+P  G YD  +LL+DFNSLYPSIIQEYN+C
Sbjct: 846  -------NEADEGKTGDKKKGPAYSGGLVLDPIVGFYDSMVLLMDFNSLYPSIIQEYNLC 898

Query: 928  FTTVERSPDGL------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--S 973
            FTT   +P               +P  P++  TGVLP  ++ LV+ RR VK  +KT   S
Sbjct: 899  FTTCALTPPEDNAAAAEADWEAQIP--PATVDTGVLPFEIRKLVENRRTVKDLLKTPNLS 956

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              K  Q DI+Q+ALKLTANSMYGCLGF  SRFYAKP+A LITQ+GR+IL S   + + ++
Sbjct: 957  REKKLQYDIRQKALKLTANSMYGCLGFQGSRFYAKPIAALITQRGRDILMSAKSMAE-SM 1015

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
               +IYGDTDSIMI++   DIA+ K I  K+ + +N +YK LEI++DG++K MLLLKKKK
Sbjct: 1016 GYSIIYGDTDSIMINTCTRDIAQVKEIGKKLSKAINDQYKRLEIEVDGVFKSMLLLKKKK 1075

Query: 1094 YAAVKVQF-KDG-MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL-SERSCEDVVESI 1150
            YAA  + F  DG +    IE KGLD+VRRDWS L+++ G F +  +L  E S +D V+++
Sbjct: 1076 YAAHTLTFLPDGSLAGGKIEVKGLDIVRRDWSELARKTGRFVVDTLLKGELSADDAVDAV 1135

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            H+ L +V + +    +  E YVITK LTK  E YPDAKNQ HV VA R    G +    A
Sbjct: 1136 HDHLREVGKKVNDNALPFEDYVITKQLTKNVEDYPDAKNQSHVLVAKRFNARG-AKKLRA 1194

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDEL--KKGDGKWMIDIDYYASQQIHPVVSRL 1268
            GDTV Y+I CE GT +  +    QRA   +E+  K+   K  +D +YY +QQ+ PVVSRL
Sbjct: 1195 GDTVQYVI-CEDGTENPHT----QRAYSKEEMESKEFANKLTVDRNYYLTQQVFPVVSRL 1249

Query: 1269 CASIEGTSPERLADCLGLDPSKFQSK----PSETMSSDPS---SSLLFAVGDEERYRGCE 1321
               I GT    +A CLGLDPSK+  +    PS  + S+ +   S LL    D + ++  E
Sbjct: 1250 IEPIRGTDAAVVAQCLGLDPSKYNRRTNFDPSGMVDSELAVGISLLLPQSLDSDLFQNVE 1309

Query: 1322 PLILSCPSCSS 1332
               ++C  C +
Sbjct: 1310 AFTVNCTKCDN 1320


>gi|118834|sp|P27727.1|DPOLA_TRYBB RecName: Full=DNA polymerase alpha catalytic subunit
 gi|10501|emb|CAA43287.1| DNA-directed DNA polymerase [Trypanosoma brucei]
          Length = 1339

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 364/985 (36%), Positives = 535/985 (54%), Gaps = 131/985 (13%)

Query: 337  FYILDAHEQLSGANM-GTLYLFGKV---KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            FY  DA EQ       GT+ LFGKV   +      SCCV ++++ R V+ +P        
Sbjct: 243  FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLPK------- 295

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               +   DAE                   +  EI        +    +  V+R YAF + 
Sbjct: 296  ---EGSTDAE-------------------VVQEINAICRGSGIEERRIKFVERYYAFEEP 333

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
             +P  +N   K+ YP + PP P      +   ++G   S LELFL+K+++ GPS+L I  
Sbjct: 334  GVPREKNRWAKLVYPGRYPPFPNKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEH 393

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
              +  A  RVS CK E  V SPKDI+V +SSK     PP TV +I L    +     NE+
Sbjct: 394  LVT--AMDRVSHCKTEFLVPSPKDIKVYNSSK---PPPPFTVASIQLHAQLDSDGVKNEV 448

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD-GGIFPMGFNKEATDRNSKAGS 631
            ++AS+       ID        +KP +   FT VR+L      P+        +      
Sbjct: 449  IAASIALYGDVSIDGE------RKPNITECFTGVRQLSPDAPLPLDLETYCLSKRMPGVH 502

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
              +    +ERALL      L  LD D++VGHNI G+ ++ LL+R Q   +    WS IGR
Sbjct: 503  RFI----NERALLTWFAETLAALDPDIIVGHNIIGYTVETLLNRYQELNI--VRWSTIGR 556

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSL----TQL 745
            L     P+++      G+  +  I   +C+ GRL+ DT+L +R+  +  +Y L    TQ+
Sbjct: 557  LDVRRFPRIQ------GNNFNLAIEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLSTQM 609

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTL---ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
                +  +R    P   + +  ++   E+L  ++      A LS  +   L V+PLT++L
Sbjct: 610  EIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRL 669

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            T ++GNLW +TL GAR++R+EYLLLHAF   K++ PDK          K+    G ED  
Sbjct: 670  TLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDK---------KKRDLKRGRED-- 718

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                              D  +GKR   Y GG+VLEPK GLY +YILLLDFNSLYPS+IQ
Sbjct: 719  ------------------DDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQ 760

Query: 923  EYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLVQRRRMV 965
            E+N+C+TT++R  + +   +P        S +  G         +LP++++ LV  RR +
Sbjct: 761  EFNVCYTTIDRDENTVSAEVPPPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREI 820

Query: 966  KTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  MK+      +  L+I+Q ALKLTANSMYGCLGF  SRFYA+PLAEL+T+QGR  L++
Sbjct: 821  KRMMKSEKDPGNLAMLEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQN 880

Query: 1025 TVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            TV+L+ Q + ++ VIYGDTDS+MI +GI DDI K + +  ++  +VN++Y+ LE+D+DG+
Sbjct: 881  TVELIPQISPSIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGV 940

Query: 1083 YKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            ++ MLLL+KKKYAA+ V     +G  Y+  E KGLDMVRRDW  LS+ V D  L +IL+ 
Sbjct: 941  FRAMLLLRKKKYAALSVVDWQGEGKVYKR-EVKGLDMVRRDWCPLSQHVSDAVLKRILNA 999

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQV-ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
               ED+++ +   +  V +D+RSG V  LE++VI+K+LTK PE+Y      PH  VALR+
Sbjct: 1000 EGGEDILDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESY-HGTGYPHAVVALRM 1058

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            KQ     G   GD +PY+IC  +G        I  +A H DE+++ DG   +D+++Y S 
Sbjct: 1059 KQR--KEGVRVGDLIPYVIC--EGDEH-----IDDKAYHIDEVRRSDG-LSVDVEWYLSS 1108

Query: 1260 QIHPVVSRLCASIEGTSPERLADCL 1284
            Q++P V RLC  I+G  PE+L++ +
Sbjct: 1109 QLYPPVMRLCEHIQGFVPEQLSEAM 1133


>gi|261330543|emb|CBH13527.1| DNA polymerase I, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1340

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 364/985 (36%), Positives = 535/985 (54%), Gaps = 131/985 (13%)

Query: 337  FYILDAHEQLSGANM-GTLYLFGKV---KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            FY  DA EQ       GT+ LFGKV   +      SCCV ++++ R V+ +P        
Sbjct: 244  FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLPK------- 296

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               +   DAE                   +  EI        +    +  V+R YAF + 
Sbjct: 297  ---EGSTDAE-------------------VVQEINAICRGSGIEERRIKFVERYYAFEEP 334

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
             +P  +N   K+ YP + PP P      +   ++G   S LELFL+K+++ GPS+L I  
Sbjct: 335  GVPREKNRWAKLVYPGRYPPFPNKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEH 394

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
              +  A  RVS CK E  V SPKDI+V +SSK     PP TV +I L    +     NE+
Sbjct: 395  LVT--AMDRVSHCKTEFLVPSPKDIKVYNSSK---PPPPFTVASIQLHAQLDSDGVKNEV 449

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD-GGIFPMGFNKEATDRNSKAGS 631
            ++AS+       ID        +KP +   FT VR+L      P+        +      
Sbjct: 450  IAASIALYGDVSIDGE------RKPNITECFTGVRQLSPDAPLPLDLETYCLSKRMPGVH 503

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
              +    +ERALL      L  LD D++VGHNI G+ ++ LL+R Q   +    WS IGR
Sbjct: 504  RFI----NERALLTWFAETLAALDPDIIVGHNIIGYTVETLLNRYQELNI--VRWSTIGR 557

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSL----TQL 745
            L     P+++      G+  +  I   +C+ GRL+ DT+L +R+  +  +Y L    TQ+
Sbjct: 558  LDVRRFPRIQ------GNNFNLAIEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLSTQM 610

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTL---ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
                +  +R    P   + +  ++   E+L  ++      A LS  +   L V+PLT++L
Sbjct: 611  EIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRL 670

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            T ++GNLW +TL GAR++R+EYLLLHAF   K++ PDK          K+    G ED  
Sbjct: 671  TLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDK---------KKRDLKRGRED-- 719

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                              D  +GKR   Y GG+VLEPK GLY +YILLLDFNSLYPS+IQ
Sbjct: 720  ------------------DDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQ 761

Query: 923  EYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLVQRRRMV 965
            E+N+C+TT++R  + +   +P        S +  G         +LP++++ LV  RR +
Sbjct: 762  EFNVCYTTIDRDENTVSAEVPPPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREI 821

Query: 966  KTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  MK+      +  L+I+Q ALKLTANSMYGCLGF  SRFYA+PLAEL+T+QGR  L++
Sbjct: 822  KRMMKSEKDPGNLAMLEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQN 881

Query: 1025 TVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            TV+L+ Q + ++ VIYGDTDS+MI +GI DDI K + +  ++  +VN++Y+ LE+D+DG+
Sbjct: 882  TVELIPQISPSIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGV 941

Query: 1083 YKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            ++ MLLL+KKKYAA+ V     +G  Y+  E KGLDMVRRDW  LS+ V D  L +IL+ 
Sbjct: 942  FRAMLLLRKKKYAALSVVDWQGEGKVYKR-EVKGLDMVRRDWCPLSQHVSDAVLKRILNA 1000

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQV-ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
               ED+++ +   +  V +D+RSG V  LE++VI+K+LTK PE+Y      PH  VALR+
Sbjct: 1001 EGGEDILDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESY-HGTGYPHAVVALRM 1059

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            KQ     G   GD +PY+IC  +G        I  +A H DE+++ DG   +D+++Y S 
Sbjct: 1060 KQR--KEGVRVGDLIPYVIC--EGDEH-----IDDKAYHIDEVRRSDG-LSVDVEWYLSS 1109

Query: 1260 QIHPVVSRLCASIEGTSPERLADCL 1284
            Q++P V RLC  I+G  PE+L++ +
Sbjct: 1110 QLYPPVMRLCEHIQGFVPEQLSEAM 1134


>gi|72393035|ref|XP_847318.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei TREU927]
 gi|62176493|gb|AAX70600.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei]
 gi|70803348|gb|AAZ13252.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1340

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 364/985 (36%), Positives = 535/985 (54%), Gaps = 131/985 (13%)

Query: 337  FYILDAHEQLSGANM-GTLYLFGKV---KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            FY  DA EQ       GT+ LFGKV   +      SCCV ++++ R V+ +P        
Sbjct: 244  FYWFDAKEQPHTLTAPGTILLFGKVCVNEEDEEFRSCCVRIQHVHRNVFLLPK------- 296

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
               +   DAE                   +  EI        +    +  V+R YAF + 
Sbjct: 297  ---EGSTDAE-------------------VVQEINAICRGSGIEERRIKFVERYYAFEEP 334

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
             +P  +N   K+ YP + PP P      +   ++G   S LELFL+K+++ GPS+L I  
Sbjct: 335  GVPREKNRWAKLVYPGRYPPFPNKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEH 394

Query: 513  FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
              +  A  RVS CK E  V SPKDI+V +SSK     PP TV +I L    +     NE+
Sbjct: 395  LVT--AMDRVSHCKTEFLVPSPKDIKVYNSSK---PPPPFTVASIQLHAQLDSDGVKNEV 449

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD-GGIFPMGFNKEATDRNSKAGS 631
            ++AS+       ID        +KP +   FT VR+L      P+        +      
Sbjct: 450  IAASIALYGDVSIDGE------RKPNITECFTGVRQLSPDAPLPLDLETYCLSKRMPGVH 503

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
              +    +ERALL      L  LD D++VGHNI G+ ++ LL+R Q   +    WS IGR
Sbjct: 504  RFI----NERALLTWFAETLAALDPDIIVGHNIIGYTVETLLNRYQELNI--VRWSTIGR 557

Query: 692  LKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSL----TQL 745
            L     P+++      G+  +  I   +C+ GRL+ DT+L +R+  +  +Y L    TQ+
Sbjct: 558  LDVRRFPRIQ------GNNFNLAIEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLSTQM 610

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTL---ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
                +  +R    P   + +  ++   E+L  ++      A LS  +   L V+PLT++L
Sbjct: 611  EIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRL 670

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            T ++GNLW +TL GAR++R+EYLLLHAF   K++ PDK          K+    G ED  
Sbjct: 671  TLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDK---------KKRDLKRGRED-- 719

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                              D  +GKR   Y GG+VLEPK GLY +YILLLDFNSLYPS+IQ
Sbjct: 720  ------------------DDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQ 761

Query: 923  EYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLVQRRRMV 965
            E+N+C+TT++R  + +   +P        S +  G         +LP++++ LV  RR +
Sbjct: 762  EFNVCYTTIDRDENTVSAEVPPPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREI 821

Query: 966  KTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  MK+      +  L+I+Q ALKLTANSMYGCLGF  SRFYA+PLAEL+T+QGR  L++
Sbjct: 822  KRMMKSERDPGNLAMLEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQN 881

Query: 1025 TVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            TV+L+ Q + ++ VIYGDTDS+MI +GI DDI K + +  ++  +VN++Y+ LE+D+DG+
Sbjct: 882  TVELIPQISPSIRVIYGDTDSVMIQTGIKDDIGKVRNLGFEIKGKVNQRYQSLELDIDGV 941

Query: 1083 YKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            ++ MLLL+KKKYAA+ V     +G  Y+  E KGLDMVRRDW  LS+ V D  L +IL+ 
Sbjct: 942  FRAMLLLRKKKYAALSVVDWQGEGKVYKR-EVKGLDMVRRDWCPLSQHVSDAVLKRILNA 1000

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQV-ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
               ED+++ +   +  V +D+RSG V  LE++VI+K+LTK PE+Y      PH  VALR+
Sbjct: 1001 EGGEDILDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESY-HGTGYPHAVVALRM 1059

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            KQ     G   GD +PY+IC  +G        I  +A H DE+++ DG   +D+++Y S 
Sbjct: 1060 KQR--KEGVRVGDLIPYVIC--EGDEH-----IDDKAYHIDEVRRSDG-LSVDVEWYLSS 1109

Query: 1260 QIHPVVSRLCASIEGTSPERLADCL 1284
            Q++P V RLC  I+G  PE+L++ +
Sbjct: 1110 QLYPPVMRLCEHIQGFVPEQLSEAM 1134


>gi|294934334|ref|XP_002781065.1| DNA polymerase delta catalytic subunit, putative [Perkinsus marinus
            ATCC 50983]
 gi|239891298|gb|EER12860.1| DNA polymerase delta catalytic subunit, putative [Perkinsus marinus
            ATCC 50983]
          Length = 948

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 363/893 (40%), Positives = 489/893 (54%), Gaps = 122/893 (13%)

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
            ESSERALL+ L   + + D D+++GHNI GF LD+L  R Q  ++P+  W K  RLK   
Sbjct: 82   ESSERALLSHLAAMVTRADPDIILGHNIFGFGLDILAQRMQHHKLPA--WHKFSRLK--- 136

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
              K R GR   G G+     S  AGRL+CDT+L +R+ +R  +Y L  L+   L   R  
Sbjct: 137  -SKKRDGRGNAGGGSLWLGRSLTAGRLVCDTYLSAREYMRMTTYDLGSLSMKLLKTARAP 195

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            V    ++K ++   +L  L E+  TDA L + + + L VL LTRQLTN++GNLW  +LQ 
Sbjct: 196  VSLDSLVKFYEDPRALSALAEHTLTDAVLQLRVGWALQVLSLTRQLTNLAGNLWSHSLQN 255

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             RA+R E LL+H F  KK+IVPDK           +R      DR   ++   D N D  
Sbjct: 256  KRAERNEILLVHEFHRKKFIVPDK-----------ERPG----DRKSHQVDVFDENGDTK 300

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
             +    R+ K   AYAGGLVLEPK GLYDK +LLLDFNSLYPSII+EYNICFTTVER   
Sbjct: 301  AATAGPRRKK--AAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVERLDA 358

Query: 934  ------SPDGLVPHLPS---SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI-QQLDIQ 983
                     G +P LP     +   +LP+++  LV+ R+ VK  +KT S  K   QLDI+
Sbjct: 359  HDSALEENAGAIPELPKRAPGEGDAILPQVITRLVESRKDVKKLLKTCSNPKTGNQLDIR 418

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGFSNSRFYAKP+A LIT+ GRE L++TVD+V+N L L+V+YGDTD
Sbjct: 419  QKALKLTANSMYGCLGFSNSRFYAKPIAALITRTGRETLQATVDIVENQLRLDVVYGDTD 478

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFK 1102
            SI +H+G +   +A  I  +++ E+NK+YK LE+D+DG++KR+LLLKKKKYA VKV  + 
Sbjct: 479  SIFVHTGTEAFDQAMRIGAQIMAEINKRYKKLELDVDGVFKRLLLLKKKKYAGVKVIDWA 538

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS-------------------- 1142
             G+  +  E KGLD+VRRDW  LSK++GD  L  +L  R+                    
Sbjct: 539  QGIAEK--EYKGLDLVRRDWCPLSKKMGDEVLRCLLGLRAESPTPASSDNGLADVDRSAQ 596

Query: 1143 -CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E VVE +H+ +  +   M + ++ LE YVITK LTK P  YPDAK+Q HV VA  + +
Sbjct: 597  EAEHVVEWLHDYVKSISLKMDNDEIPLEDYVITKALTKMPADYPDAKSQAHVMVAKSMME 656

Query: 1202 SGYSTGCSAGDTVPYIIC----------------CEQGTSSGSSVGIAQRARHPDELKK- 1244
            SG+      G+ +PY+I                  +  T    S  +A RAR PDE++K 
Sbjct: 657  SGHVI--RPGNEIPYVITRLVESATKADADGDSDTKPATLGNDSQSVAARARSPDEVRKL 714

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS-KPSETMSSDP 1303
            G     ID  +Y S QIHP + RLCA + GT    LA+CLGLDPSKF S   S   + D 
Sbjct: 715  GSSVIQIDTQWYKSHQIHPPLVRLCAPVSGTDAAHLAECLGLDPSKFASIGMSNNNAGDG 774

Query: 1304 S------SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
                   +SL   +  + +Y      +           C  VC  I  ++ +K       
Sbjct: 775  DDIEAVMASLSQNIDIDTKYSDARKFLAGSARQYKCHKCKTVC-HIADAIKQK------- 826

Query: 1358 YNFWRTLRCPKCPEEVEAGRISP--GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
                    C KC  E+ +  I     +I  +V R+A G       G + CDDE C   T 
Sbjct: 827  -------ECVKCSAEISSALIRNLLTLILRKVTREA-GL------GWVRCDDEGCGRVTR 872

Query: 1416 SLNLRLIGDAERGTV-CPNYPRCNGRL--VRKYTEADLYKQLTYFCHLLDTQR 1465
             L L        GT  CP +  C G+L  +  +T   +++ L+Y   L    R
Sbjct: 873  QLPL--------GTSRCP-FGGCRGKLQQLPAHTNRAVHEVLSYLRELTAKHR 916


>gi|149240417|ref|XP_001526084.1| DNA polymerase alpha catalytic subunit [Lodderomyces elongisporus
            NRRL YB-4239]
 gi|146450207|gb|EDK44463.1| DNA polymerase alpha catalytic subunit [Lodderomyces elongisporus
            NRRL YB-4239]
          Length = 1529

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 388/1183 (32%), Positives = 588/1183 (49%), Gaps = 119/1183 (10%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPL 388
            D+ G    + +D  E        +L LFGKV          VV V  + R ++ +P    
Sbjct: 377  DEQGHFRMFWMDYAEV-----ENSLLLFGKVATRDGKLVSGVVQVNGLCRELFILP---- 427

Query: 389  FQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYA 448
             +   ++  E+D    R++P   R+++  + +           +  +         ++YA
Sbjct: 428  -REYRMVDGEEDTGSPRVTPNDVREEITPLFME----------HYKLETLRAKAETKKYA 476

Query: 449  FGQAEIPAGENYVLKINYPFKDPP----LPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            F  A IP    Y LK+  P+ +      LPA+ +G+ F  + G++++  E F+ +R + G
Sbjct: 477  FELANIPKEAEY-LKVLLPYNNATNRKVLPANTEGQTFRHVFGSNTNMFESFVTQRNIMG 535

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P WL I    +  A Q  + C+ E+ V  P  I     +   A  P +T T+I+++TV N
Sbjct: 536  PCWLDIEG-GNFEAIQNSTHCQVEVAVSLPNKILPVDKAPPAA--PNLTCTSISVQTVMN 592

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
             + +  E+VS ++        D P+   E   P  +   T VR +    FP G N+ A  
Sbjct: 593  PKHNKQEVVSVTLATFFDLPQDAPI--PEGLNPNDV--ITFVRPVGSVSFPPGLNQLA-- 646

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
               K   N+  C  +E+ LLN +  ++  LD DV VGH +    LDVL+HR    +V + 
Sbjct: 647  --QKEKFNLRLC-PNEKVLLNAVAAKVKMLDPDVFVGHRMENISLDVLVHRMYDNQVMT- 702

Query: 685  MWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
             WS +GR  R + P+ + K +   G   +  I     GRL+CD       +  E+  SLT
Sbjct: 703  -WSALGRRNRKQWPQHITKNKNSSGFNNNLLIREVFQGRLMCD-------IANEMGQSLT 754

Query: 744  Q------LAKTQLNKDRKEVGPHDVL----KMFQTLESLMELIEYGETDAWLSMELMFHL 793
                   LA+       K+  P D+     K  +    L   ++    +A ++ E+ F +
Sbjct: 755  SKCQSWDLAEMYEVVCHKKHEPMDISFQNSKFAEDATLLFLALKENNFNAKITSEIAFSI 814

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +L L++QLTNI+GN W  TL G RA R EY+LLH FR   YIVPDK   + +     Q+
Sbjct: 815  QILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFRKNNYIVPDKEDALHKNTSYLQQ 874

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
            +     D +V+  T                   + P + GGLV EP+KGL+  YIL++DF
Sbjct: 875  AKLESFDDDVQTAT-----------------SNKKPKFQGGLVFEPEKGLHKNYILVMDF 917

Query: 914  NSLYPSIIQEYNICFTTVERS-------PDGLVPHLPSSKT-TGVLPELLKNLVQRRRMV 965
            NSLYPSIIQE+NICFTTV+R         +  +P LP +    GVLP LL  LV RRR V
Sbjct: 918  NSLYPSIIQEFNICFTTVDRDRFNNTHDEERDLPTLPDNDADAGVLPRLLNTLVTRRREV 977

Query: 966  KTWMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            K  +K       Q  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL 
Sbjct: 978  KKLLKDPKNTPFQNAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILM 1037

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
             T  L ++N +L V+YGDTDS+MI +G D++  A  +  +   +VN++Y+ LEID+D ++
Sbjct: 1038 DTRQLAESN-SLRVVYGDTDSVMIDTGADNLRDAVKVGEQFKVQVNERYRLLEIDIDNVF 1096

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEV--IERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +R+LL  KKKYAA+          EV  +E KGLDM RR++  LSKE+  F L +ILS  
Sbjct: 1097 RRLLLHAKKKYAAMNASINKATGEEVTTLEVKGLDMRRREYCQLSKEISTFVLMKILSNA 1156

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E+ +  ++  L ++++ + + QV   KY I   L+K P +YP+ KN P VQVAL+LK 
Sbjct: 1157 DPEEALMDVYQYLEEMRDKIIANQVPAIKYKINTKLSKDPTSYPNGKNMPQVQVALKLKN 1216

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
             G      AG  + Y+I      +  SSV  A RAR   +L     +   D  YY  +QI
Sbjct: 1217 QG--KVIKAGSVITYVITAPTAENDTSSV--ADRARAIQDLLVQKTELRPDPTYYLEKQI 1272

Query: 1262 HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCE 1321
               V RL   I+     R+A  LG+D  ++  K      +     +   + D ER+R   
Sbjct: 1273 FAPVERLLEKIDSVDMVRVATALGIDTKRYILKVKNGDLNGEIMPMESRISDAERFRQSS 1332

Query: 1322 PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPG 1381
             L+L C  C   F    + +S+   V+            +  ++C KC       +++  
Sbjct: 1333 FLVLKC-KCGHHFRFGGIQASVDYRVT------------FNGVQCSKCEYTFPLIKLTA- 1378

Query: 1382 MIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNYPRCN 1438
                Q++      +S+YY G ++CDD +C  TT  +++   R IG + +G        C 
Sbjct: 1379 ----QLECTIRKHISVYYAGWLVCDDPSCGITTRQISVYGKRCIGLSGKGL------DCK 1428

Query: 1439 GRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKE 1481
            G +  +YT+  LY QL YF  + D ++  ++     +  LE+E
Sbjct: 1429 GVMSYRYTDKALYNQLLYFQSIFDVEKTKQRKLRPIRDALEEE 1471



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 44/178 (24%)

Query: 21  ARAEALERLKALRRGGRRSGDSV-------GYNIKLENPIYDTVAEDEYDALVARRREEA 73
           +RA   ++LK L+   +  G+ V          + L N IYD V E+ +       RE  
Sbjct: 3   SRAARRDKLKQLQEARKSRGNVVIDLDDDGDDGVNL-NKIYDEVDEETF-------REHK 54

Query: 74  R------GFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN 127
           R       FIVDD+G GY D G +E W  A  P+   DE  D +      R   + +K  
Sbjct: 55  RKQLMDDDFIVDDNGEGYVDNGADE-WDDASRPNYYSDEDSDTE-----VRTSSKKRKNR 108

Query: 128 NQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEK---VKESESVIDEVLAEF 182
           + N R    + TA                +  FK S D      K+ ++ ID++L +F
Sbjct: 109 HHNQRAVKVAKTAPI--------------SNFFKHSNDINGGIKKKVDTNIDDILEDF 152


>gi|313236818|emb|CBY12070.1| unnamed protein product [Oikopleura dioica]
 gi|313241440|emb|CBY33695.1| unnamed protein product [Oikopleura dioica]
          Length = 1387

 Score =  547 bits (1410), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 437/1325 (32%), Positives = 648/1325 (48%), Gaps = 209/1325 (15%)

Query: 240  DVVEESKELKWE--SDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLL 297
            +V +   E K E  SDN  EL +  + V       +E++ED     K     STE    L
Sbjct: 197  NVFKREAEAKQEYISDNDDELPEPGD-VFGDNDFDEEMSEDENRIPKKEPS-STEISSKL 254

Query: 298  SATAGWKEVSGGNMVLDEGKSGLN------CQESEFEVD-----DDGSLPFYILDAHEQL 346
               +  +E S  N V +E  S ++      C E + E D     D+  L  Y LDA+E  
Sbjct: 255  QNISMEEEKSVINHVKEEPDSQIDWNATKTCVEFDKEEDIQYPVDENCLNLYWLDAYETQ 314

Query: 347  SGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRI 406
               + G LYL G+        SCC+++ N+   VY +P                      
Sbjct: 315  YNKS-GKLYLTGRANVAGELKSCCLIISNIPHVVYILP---------------------- 351

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY 466
                  ++  D    +  EI   +    V ++   P+K++  FG A +P    Y L++ Y
Sbjct: 352  ------RENSDTG-DVYEEIGEWMDKNKVDSWKAKPMKKKNFFGGAGVPPEAEY-LRVEY 403

Query: 467  PFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
              K+P + + +KG +F  +   +    E F ++R + GP WLSIS +S       +SWC 
Sbjct: 404  GPKNPLMSSTMKGAHFSHVFNVNQPLFEFFALERNIMGPCWLSISSYSPVSGGA-ISWCS 462

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
             E      + ++V   S+ + E P +T+ +++ KT+  K+   NE+ + ++V     +  
Sbjct: 463  VEYDCTDYRAVQVHPDSEKMHE-PQLTMVSLSFKTIPLKK--TNELAAFTLVVNKNFR-- 517

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
               L+S  K P      T + K      P  +N E    N K  S   C    E+ LLN 
Sbjct: 518  ---LSSTKKVPEHDYIMTALSKPATMTLPYDWNGEMGGNNEKVES---CL--GEKHLLNI 569

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
             + EL ++D D+++GH++  F L+ +L R +V  V  + WS++GR+KR +MP++     +
Sbjct: 570  FLKELRQIDPDIILGHDLLDFGLEYILQRMKVHSV--NGWSRLGRIKRKDMPRMAAQIGL 627

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN--------------K 752
                A  G  +C  GRL+ DT   + +L++   Y+LT L + Q+               K
Sbjct: 628  ----ARAGHDAC-NGRLVADTKTSAMELVKMRDYNLTSLCEEQIPEQLSGLKPHFLYACK 682

Query: 753  DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            +RKE  P  +++ F +  +L  L++    D + +M +  ++  LPL  Q+TNI GN+  +
Sbjct: 683  NRKEYLPEHIVEAFGSSNTLRMLLQENINDCFRNMLISSNIQSLPLAVQITNICGNILSR 742

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            TL   RA+R  YLLLHAF  K ++ P    Y K+T          VED +          
Sbjct: 743  TLSRGRAERNAYLLLHAFHKKDHLPPP--PYKKKT----------VEDGD---------- 780

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
                         K+GP +AGG+VLEPKKGLY  YILLLDFNSLYPSIIQEYNICFTT  
Sbjct: 781  -------------KKGPKFAGGMVLEPKKGLYTNYILLLDFNSLYPSIIQEYNICFTTTA 827

Query: 933  -RSPDG-----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQ 985
             ++P G      +P LP +   G+LP  +K LV RR+ VK  +K      ++ +L+I+Q 
Sbjct: 828  MQAPPGEDISTWLPDLPKTMEEGILPFEIKKLVNRRKEVKKLIKNEKNADELARLNIRQL 887

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
             LKLTANSMYGCLGF+ SRF A+PLA L+T +GREIL +T   V+  +NLEV+YGDTDSI
Sbjct: 888  GLKLTANSMYGCLGFTASRFCAQPLAALVTAKGREILEATKVFVE-KMNLEVVYGDTDSI 946

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            MI+S   +I++   +   V +EVNK Y+ LEID+DG YK MLLLKKKKYAA+    K+  
Sbjct: 947  MINSNSTNISEVMKLGNLVKKEVNKHYRLLEIDIDGAYKSMLLLKKKKYAAIDQNGKE-- 1004

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                 E KGLD+VRRDWS +++  G   L  +L E+  E+ V  IH  L  +   + + +
Sbjct: 1005 -----EFKGLDIVRRDWSEIARNEGRTILKLLLHEQDEEEGVRKIHEHLEMIGTKLENKE 1059

Query: 1166 VALEKYVITKTLTKPPEAYPDAKN-QPHVQVALRL--KQSGYSTGCSAGDTVPYIICCEQ 1222
                 Y I K LTK PE YP + + QPHV+VALR+  KQ G      AGDTVPYIICC  
Sbjct: 1060 YRTVDYRIQKALTKAPEQYPKSGDGQPHVKVALRMNKKQPG---KFKAGDTVPYIICC-- 1114

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
                   +  A RA HP E+ +   K  IDIDYY   Q+ PV  RL   IE T  +++A 
Sbjct: 1115 ---GDEKLKAADRAFHPSEVAR--EKKEIDIDYYLRSQLVPVFGRLLDPIEATDEQQIAT 1169

Query: 1283 CLGLDPSKFQS--KPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFD--CPA 1338
             LG+DPS F+S          +   + + +  +EE+   C PL ++      T D   P 
Sbjct: 1170 RLGMDPSAFKSRAATRARAEREEEMARIASQKEEEKLANCTPLEINIGEERLTLDLFVPP 1229

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
               +     + +    + E    + L+                    Q+KR         
Sbjct: 1230 FSQNYGDGKALREKMSQIECALRKALKL-------------------QIKR--------V 1262

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNY--------PRCNGRLVR-KYTEAD 1449
            Y    +C   +C Y T     R I         PNY        P C   +++ +++ +D
Sbjct: 1263 YDNWQIC---SCGYRT-----RFIS--------PNYTSKGLFACPSCEDDILKCEFSISD 1306

Query: 1450 LYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVK 1509
             Y QL +F  + D    ++KM  +++IP EKE  +      +A   + R+ E  AY +V 
Sbjct: 1307 FYLQLQFFQRIFDADAWLKKM--NSEIPKEKEQRE------MALKEINRVNEDYAY-YVG 1357

Query: 1510 LNDIA 1514
            +  IA
Sbjct: 1358 VKKIA 1362


>gi|170592803|ref|XP_001901154.1| DNA polymerase alpha catalytic subunit [Brugia malayi]
 gi|158591221|gb|EDP29834.1| DNA polymerase alpha catalytic subunit, putative [Brugia malayi]
          Length = 1292

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 458/1414 (32%), Positives = 683/1414 (48%), Gaps = 215/1414 (15%)

Query: 9    AGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVAR 68
            +  R     E  +++ ALE +K  R  G     +V   +K   P+Y+ V EDEY  +V  
Sbjct: 24   SSHRSHVSREQESKSRALEEMKRARDAGTVHRVNVANLVK---PVYEEVDEDEYVRIVQE 80

Query: 69   RREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
            R+++   F+VDDDG GY D G +            D+E     R   K + E+RG K   
Sbjct: 81   RQKD--DFVVDDDGSGYVDHGFD----------FFDEEQCTATRKAMKAK-ERRGDKVKR 127

Query: 129  Q---------NVRKPNPSLTAAAAMMGKQRLSAMLT---STAMFKKSKDEKVKESESVID 176
            +         N++K     T          + A+L    S+   KKS +EKV  S++   
Sbjct: 128  KGIGNFFHALNIKKMKEENTVTVT--DDPDVEALLNECDSSNFLKKSANEKVDGSKTDNV 185

Query: 177  EVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTN-----SVKENSDLIN 231
             ++     D                S ++ NS+KT+  +  N        +   +   I+
Sbjct: 186  SLIRNHCFD----------------SKITANSIKTHQMIKLNERREHLNVTASHSPSPIS 229

Query: 232  NFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKIST 291
            N  +  N + + E +  K  S  S++   +D+F++ +   K ++  +V      ++    
Sbjct: 230  NVGKSTNLESISEKEVRKVFSKESSKEQVKDHFLDAQ---KSDIFVEVHSVTNKHSDKCV 286

Query: 292  EKDPLLSATAG-WKEVSGGNMVLDEG--KSGLNCQESEF---EVDDDGSLPFYILDAHEQ 345
             K+ +   T+  W +    N +L+E   K  +      F    ++ +  L FY LDA E 
Sbjct: 287  VKEVVQPETSFIWAD---RNQMLNEQPMKESVVATFGSFMRTNLEGELVLRFYWLDAFE- 342

Query: 346  LSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLF----QTDEIMKLEKD 400
                 M GT+YLFG++  GS   SCCVVVKN+ R V+ +P         QTDE+  ++ +
Sbjct: 343  -DPIKMPGTVYLFGRLINGSISESCCVVVKNIWRQVFFLPREKHLVNEVQTDEVDLMQVN 401

Query: 401  AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
             E  +I                       L ++ V      P ++++A+    +P     
Sbjct: 402  EEVQKI-----------------------LRSMGVKVVKCRPCEKKFAYNDGIVPQNAQ- 437

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
            VL++ Y F DP LP DL GE F  +  T ++A+E  LV+  +KGPSW+ IS    C    
Sbjct: 438  VLEVQYSFNDPRLPMDLSGETFSHVFNTTANAMERLLVETGMKGPSWIEIS---GCNVSS 494

Query: 521  -RVSWCKYEITVDSPKDIRVSSSSKHVAEVPP-VTVTAINLKTVFNKRQDVNEIVSASVV 578
             +V++ K+E TVD  +   +S S    ++ PP + +  +N+ T+ N +++ +EIVS S +
Sbjct: 495  LQVTYVKHEFTVDMERMKSISISD--CSDPPPNLNLLTVNIVTIINSKKE-SEIVSISCI 551

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
               K     P L   +     L  F ++ K     +P            + G + +  E+
Sbjct: 552  FDRKCTTTNPTLNRNF-----LERFCILTKPSFSAYPFDLKINL----KQLGMDTVVYET 602

Query: 639  S-ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            + ER +LN  + +L  LD D   GH+++     +L  R +  ++  + WS++ RLKRS  
Sbjct: 603  TNERHMLNHFLCKLQNLDPDAYAGHDLAT-QFTILSSRIE--KLGIAHWSRLSRLKRS-- 657

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
             K R+   +  S          AGR + D            S + TQL +          
Sbjct: 658  VKARQAAHMKTSQ-----WELTAGRFILD------------SRNSTQLIR---------- 690

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
                              I     DAWLS+ ++  L+ LPL  Q+T I G +  +T+ G 
Sbjct: 691  -----------------FINNAWMDAWLSLAIIVELNALPLFIQITKIVGGVLSRTVLGG 733

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            RA+R EYLLLHAF    Y+ P+K  Y  ++K  KQ      + R+     N   ++ N  
Sbjct: 734  RAERNEYLLLHAFNKAGYVAPNK--YQSDSKKRKQS-----QLRDTRSADNHPGDY-NKI 785

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD- 936
              N  RKG+    YAGGLVL+PK GLYD +ILLLDFNSLYPSIIQEYNICFTTV+ S   
Sbjct: 786  LQN--RKGQ----YAGGLVLDPKMGLYDTFILLLDFNSLYPSIIQEYNICFTTVDMSKKD 839

Query: 937  -GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANS 993
               +P LP+    G+LP  +++LV+RRR VK  MK+   +  + QQ DI+Q  LKLTANS
Sbjct: 840  KNEMPELPTDANEGILPREIRSLVERRRDVKRMMKSEKLTEQQRQQYDIRQMGLKLTANS 899

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI-- 1051
            MYGCLGF  SRFYAKPLA LIT QGREIL  T DLV+ +    VIYGDTDS+MI++G   
Sbjct: 900  MYGCLGFQQSRFYAKPLAALITAQGREILMHTKDLVEKS-GYSVIYGDTDSVMINTGFSE 958

Query: 1052 -DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
              ++   K +   + + +N+ YK LEID+DG++ ++LLLKKKKYA + V   D    +  
Sbjct: 959  RSELQHVKKLGNDIKKIINQSYKKLEIDIDGIFIKLLLLKKKKYAGLAVDLNDERKIKR- 1017

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC--EDVVESIHNSLMKVQEDMRSGQVAL 1168
            E KGLD+VRRD+S + KE+G+  L  ILS +S   ++++E IH+ L K++E++    + +
Sbjct: 1018 EIKGLDIVRRDYSFIVKEIGNEILDIILSVQSQNRDEIIEQIHSRLQKLKEEISQELLEI 1077

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
              + I K LT+ P+ Y +   QPH  VA RL  +G       GDTV YIIC       GS
Sbjct: 1078 SMFQIFKQLTRNPDEYTNINIQPHAVVAQRLNATG-KFKFHRGDTVGYIIC-----EDGS 1131

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
                 QRA H  E+++ + +  ID  YY  QQI PVVSRLC  IE  +   +A  LGLD 
Sbjct: 1132 GQSATQRAYHLTEVQENNLR--IDFHYYLVQQIIPVVSRLCVPIEECNEAWVAQALGLDS 1189

Query: 1289 SKFQSKPSETMSSDPSSSLL-FAVGDEERYRGCEPLILSCPS--CSSTF--------DCP 1337
              ++       + D    L  F+    +R   CE     CP+  C   F        D  
Sbjct: 1190 MIYEKHAVHEENVDREEQLXCFSYHSLQR---CESFKFVCPNDGCGHEFLVRECVIQDIS 1246

Query: 1338 AVCSSICMSVSEKPSKPETEYNFW--RTLRCPKC 1369
             VC  I  +      +  T    W    + CPKC
Sbjct: 1247 YVCDDIGCAY-----RTRTLVLAWTREGVPCPKC 1275


>gi|401412836|ref|XP_003885865.1| putative DNA polymerase alpha catalytic subunit [Neospora caninum
            Liverpool]
 gi|325120285|emb|CBZ55839.1| putative DNA polymerase alpha catalytic subunit [Neospora caninum
            Liverpool]
          Length = 1999

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 450/1386 (32%), Positives = 647/1386 (46%), Gaps = 303/1386 (21%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV----------------- 360
            +G    +S+  + +DG+LPFY LDA E+      GTLYLFGKV                 
Sbjct: 410  AGDQASDSQPPICEDGTLPFYFLDAWEE-----AGTLYLFGKVWPAAAKPEKEGAEASPS 464

Query: 361  ----KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQ 416
                + G    SCCVVV++M   ++      +  T     LE + E+        R++  
Sbjct: 465  LQKYRGGPPPQSCCVVVRDMMVPLFFRTREQVDMTSSSRLLEGEEEKDGAKASEEREREL 524

Query: 417  DVALGLKTEIANQLLNLNVSNY---------IVSPVKRRYAFGQAEIPAG-ENYVLKINY 466
               L  + EI       ++             +  V R YAF   ++P G E   +K+  
Sbjct: 525  RRRLERRMEITKAFFKQDLPRLKQKYRWRKVAIKGVFRHYAFDAPDVPRGREQTFVKVFV 584

Query: 467  PFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS-SCPAPQRVSW 524
            P   PPL P DL+GE +  + G   S +EL LVKR++KGP WL I  F+    A   +SW
Sbjct: 585  PASAPPLSPDDLEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIGNFTRPASAFDHLSW 644

Query: 525  CKYEITVDSPKDIRV------SSSSKH----VAEVPPVTVTAINLKTV-----FNKRQDV 569
            C++E+ + S KD+R+      ++ S+H    +   PP+TV A++ K+V         QD 
Sbjct: 645  CQHEVYIQSHKDVRLWNAFNKATQSRHPDGALPPPPPLTVVALSAKSVQVPTGAAGHQDT 704

Query: 570  N-EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI-------FPMGFNKE 621
            + ++  AS      A ID            +      VR   G          P+ F + 
Sbjct: 705  DRQLAMASFFVYRDADIDDQNAQPRLSPQNVFCGIRRVRTAGGATARVNAEGLPLQFYEL 764

Query: 622  ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
             T    K G +V     +E+ LL   +  L   D D+LVGHNI G DL++L  R  V  +
Sbjct: 765  CT----KQGFSVF---DAEKTLLLNFINRLAAADPDILVGHNIYGSDLEILGQRCAVHGL 817

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTI--------------FGSGASPGIMSCIAGRLLCDT 727
            P  +W ++ RLKR +  + R   ++              FG+    G      GRL+CDT
Sbjct: 818  P--VWHRLSRLKRPKHVRPRASPSVSSGASGRREGLDGSFGAAGVWGGRLLTVGRLVCDT 875

Query: 728  FLCSRDLL-REVSYSLTQLAK-------------------TQLNKDRKEVGPH----DVL 763
            ++ + +LL   V+Y L  L +                    ++ KD + + P     ++L
Sbjct: 876  YMQAHELLGHRVNYDLVPLLQDLFLTSPGSPAATASSAWAAKIQKDIRALKPFPQPLELL 935

Query: 764  KMFQTLES--LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
            + FQ  E+  L+  ++    + ++++ L + L+ LPLTR+LT I GNLW ++LQ  RA+R
Sbjct: 936  EFFQRREAQPLLVCLQMCVQETFMTVALCWRLNCLPLTRELTTIGGNLWARSLQNQRAER 995

Query: 822  VEYLLLHAFRAKKYIVPDK---------FTYVKETKMAKQR-----SNHGVEDRNVEELT 867
              +LLLH F  +K+I PD+             +  + A +R        G ED   +E  
Sbjct: 996  NAFLLLHEFHREKFICPDREDPYSRGAPNKRPQAGRTAPRRWPGAPGGSGKEDDLGDEEG 1055

Query: 868  NEDANF-----DNDTSHNDHRKGKRGPA------YAGGLVLEPKKGLYDKYILLLDFNSL 916
              DA       ++D  H   R+G+   +      YAGGLVLEP+ GLYD ++LLLDFNSL
Sbjct: 1056 GIDAGLVERRDEDDGLHEGRREGEERGSGRAKANYAGGLVLEPRVGLYDTFVLLLDFNSL 1115

Query: 917  YPSIIQEYNICFTTVER-------------SPDG-------------LVPHLPS------ 944
            YPSIIQEYN+CF+TV+R              PDG               PH         
Sbjct: 1116 YPSIIQEYNVCFSTVKRPVRSRHGQTSAACGPDGEHADTLQERDEDTSRPHAAEEDVQGI 1175

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
            + T G+LP +L+ LVQRRR VK  MK  +  +K    +I+Q ALKLTANS+YGCLGFS S
Sbjct: 1176 ASTPGLLPRILRQLVQRRRAVKASMKGETNPVKRAAQEIKQLALKLTANSIYGCLGFSRS 1235

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAG 1062
            RFYAK LA  ITQQGR IL +T D V+  L LEV+YGDTDSIMI++G+ DD  + KA A 
Sbjct: 1236 RFYAKELAAFITQQGRNILTATKDKVERTLRLEVVYGDTDSIMINTGLRDDGGQGKAYAA 1295

Query: 1063 ------KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA------VKVQFKDGMPYEVI 1110
                  +V  E+NK YK LEIDL+ +++R+LLLKKKKY         K Q+K       +
Sbjct: 1296 AVRLGEQVKAEINKSYKKLEIDLEAVFRRLLLLKKKKYVCCIVLDYAKRQYK-------L 1348

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQIL-------------------------SERSCED 1145
            E+KGLD+VRRDWS L+K VG+  L QI+                         S+ + + 
Sbjct: 1349 EQKGLDIVRRDWSKLTKVVGNQLL-QIMFRVGQNAPLPANAEASSPAKEKESASKDAVDS 1407

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN----QPHVQVALRLKQ 1201
            VVE +H  L +V + +R+G+V LE +VITK LTKPP+ Y          PHVQV+LR++ 
Sbjct: 1408 VVEELHEKLREVAKQLRAGRVPLEFFVITKALTKPPQMYARGTGGAVLHPHVQVSLRMQA 1467

Query: 1202 SGYSTGCSAGDTVPYIICC------------------------EQGT------------- 1224
             G S     G+ +PY+IC                         EQG+             
Sbjct: 1468 QGLSV--KPGNEIPYVICSEASVRAFLASQDAAGDEAETAKRNEQGSPIEEPGKRAEASK 1525

Query: 1225 -SSGSS--VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
             + G S  +  A+RA HP E+  G+    +D+DYY  QQ+ P + R+CA +EGTS  RLA
Sbjct: 1526 NAQGRSGPLSPAERAFHPREV-AGNKTLEMDVDYYLEQQLLPPIQRMCAFVEGTSASRLA 1584

Query: 1282 DCLGLDPSKFQSK-----PSETMSSDPSSS------LLFAVGDEERYRGCE-PLILSCPS 1329
            +CLGLD SK         P +  S D          +      EE+Y+  + P+ L C +
Sbjct: 1585 ECLGLDGSKHARPDGVPGPGKDASRDAREKAGEERIMALISKSEEKYKMYKLPINLPCVA 1644

Query: 1330 CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKR 1389
            C +T                         +  + +RCP C        ISP  + N V+ 
Sbjct: 1645 CKATI---------------------LGKDVLQFMRCPSC-----TWWISPSTLRNFVRL 1678

Query: 1390 QADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC-NGRLVRKYTEA 1448
                  S + +  + C     ++  C              VC   PRC  G L  + +  
Sbjct: 1679 TLAALQSKFARPRLRCSSCHERFDQCPPPSSFATGRRSRLVC---PRCEEGNLREELSAH 1735

Query: 1449 DLYKQL 1454
            DLY  L
Sbjct: 1736 DLYMYL 1741


>gi|367015308|ref|XP_003682153.1| hypothetical protein TDEL_0F01310 [Torulaspora delbrueckii]
 gi|359749815|emb|CCE92942.1| hypothetical protein TDEL_0F01310 [Torulaspora delbrueckii]
          Length = 1448

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 394/1143 (34%), Positives = 598/1143 (52%), Gaps = 130/1143 (11%)

Query: 353  TLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            +L LFGK+K       S  V +K + R +Y +P           K  +D  E  I P+  
Sbjct: 337  SLVLFGKIKTNDNKLVSGMVQIKGLCRELYFLPREG--------KTPQDVHEE-IIPLLL 387

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
             K       G+ T  +              P + +Y F   E+P   +Y LK+  PF  P
Sbjct: 388  GK------YGIDTLRS-------------KPERMKYCFELPEVPRESDY-LKVLLPFDTP 427

Query: 472  -----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
                  +P+DL  + F  + G +++  E F +++K+ GP WL   K     A Q  S C 
Sbjct: 428  KSKYDTIPSDLSSDTFHHVFGGNANIFETFAIQKKIMGPCWLEF-KNGDFNALQNASNCA 486

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
             E+ V++P+DI        +  VP +   ++ ++TV N++ +  EIVS ++       +D
Sbjct: 487  LEVVVNNPQDIL----PLDIKNVPGLDAISLAVQTVMNQKDNKQEIVSMTICTYKDISLD 542

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
            +P+   E  KP   S  T+VR   G  FP+GF K A  R    G   + C ++E+ LL+ 
Sbjct: 543  SPI--PENLKPD--SIVTLVRPPRGSSFPVGFAKLA--REKLKGQ--VRCFNNEKLLLSC 594

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
                L   D DV++GH +    LDVL HR     +P+  ++ +GR  R + P        
Sbjct: 595  FCAMLKLSDPDVIIGHRLGSVYLDVLAHRLHDLNIPT--FNALGRRARKQWPDR------ 646

Query: 707  FGSGASPG----IMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEV 757
            FG   S      +   + GRL+CD    + ++ + +     S+ L ++ +     D K V
Sbjct: 647  FGKNNSNMNHFYVQELMCGRLVCDI---ANEMGQSLTPKCQSWDLAEMYQITCGVDHKPV 703

Query: 758  GPHDVLKMFQTLESLMELIEYGET--DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
              +     +Q   + + +   GE   ++ ++ E+ F + +L LT+QLTN++GN W +TL 
Sbjct: 704  DINYQSAEYQEDGNCLAM-ALGENIENSIITAEVSFRIQLLSLTKQLTNLAGNAWSQTLG 762

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G RA R EY+LLH F    YIVPDK T     + A+++               E+A  D 
Sbjct: 763  GTRAGRNEYILLHEFSRNGYIVPDKETNKTRAQRARKQ---------------EEALVDG 807

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
            +    D     +   Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ 
Sbjct: 808  EPP--DAIPSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNL 865

Query: 936  DGL--VPHLP-SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
            +    +P+ P   K  GVLP LL NLVQRRR VK  M + S   K  Q DI+QQALKLTA
Sbjct: 866  EDADELPNAPVDKKEQGVLPRLLANLVQRRREVKKIMASESDPHKRVQCDIRQQALKLTA 925

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI 1051
            NSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L ++ ++L V+YGDTDS+MI SG 
Sbjct: 926  NSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-MSLLVVYGDTDSVMIDSGC 984

Query: 1052 DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVI 1110
            D    A  I     + VN++Y+ LEID+D ++K++LL  KKKYAA+     K+G  + V+
Sbjct: 985  DSYTGALEIGNNFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNASLDKNGKEHTVL 1044

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            E KGLDM RR++  LSK+V    L+ ILS++  E  ++  +  L  ++  +   ++ +++
Sbjct: 1045 EVKGLDMKRREYCPLSKDVSVHVLNTILSDQDPETALQRTYEYLEGIRNQVEQNEIRMDR 1104

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG--- 1227
            Y I   L+K P AYP  KN P VQVALR++++G      AG  + ++I  ++   +G   
Sbjct: 1105 YKINTKLSKDPGAYPGGKNMPAVQVALRMRKNGRVV--KAGTVITFVITKQEEKETGQKE 1162

Query: 1228 SSVGIAQRARHPDE-LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            + + IA+RAR  +E + KG+G    D +YY  +QI   V RL   IE     RL++ LGL
Sbjct: 1163 AMLPIAERARALNEVMVKGNG-LKPDPEYYLEKQIFGPVERLLERIESFDIVRLSEALGL 1221

Query: 1287 DPSKFQSK--PSETMSS--DPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            D  ++ ++   +ET  S  +    L   + D ER++    L L+CP+CS+TFD   + +S
Sbjct: 1222 DSRRYMNRGGSNETNGSGINGLQPLESTIPDTERFKDAANLKLNCPNCSATFDFGGIVAS 1281

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
               S+S            +  L+C KC         +P  I +Q++R     +S+YY G 
Sbjct: 1282 NYYSMS------------YNGLQCKKCEH-----LFAPLQINSQLERSIRSHISLYYAGW 1324

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
            + CDD TC   T  +++        G  C N   C G +  +Y++  LY QL YF  L +
Sbjct: 1325 LQCDDPTCGNVTRQISV-------FGKRCLN-DGCTGVMRYRYSDKKLYNQLLYFDSLFN 1376

Query: 1463 TQR 1465
             ++
Sbjct: 1377 CEK 1379



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 8/76 (10%)

Query: 20 SARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEA--RGFI 77
          S + E LE+LK LR    R+G  +  N + ++ +YD + E EY +   R+R+E     F+
Sbjct: 2  SGQNERLEKLKKLRAA--RNGIQLP-NDEEDDRLYDEIDEHEYRS---RKRQELLRDDFV 55

Query: 78 VDDDGLGYGDEGQEED 93
          VDDDGLGY D G EED
Sbjct: 56 VDDDGLGYVDRGVEED 71


>gi|367002710|ref|XP_003686089.1| hypothetical protein TPHA_0F01710 [Tetrapisispora phaffii CBS 4417]
 gi|357524389|emb|CCE63655.1| hypothetical protein TPHA_0F01710 [Tetrapisispora phaffii CBS 4417]
          Length = 1460

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 379/1052 (36%), Positives = 556/1052 (52%), Gaps = 100/1052 (9%)

Query: 442  PVKRRYAFGQAEIPAGENYVLKINYPFKDPP-----LPADLKGENFCSLLGTHSSALELF 496
            P + +YAF    IP   NY LK+  PF  P      +P+DL  E F  + G  +  LE F
Sbjct: 413  PQEMKYAFEIPGIPHVTNY-LKVLLPFDTPKSKRDIIPSDLNSEKFSHVFGGGTGILESF 471

Query: 497  LVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTA 556
            LV+ K+ GP WL I K       Q  S CK EI+V +P DI+    S  V     +   +
Sbjct: 472  LVQNKIMGPCWLDI-KNGDFETLQNTSHCKLEISVSNPSDIKPIEDSGEVF----LKCMS 526

Query: 557  INLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
            ++++TV N+ ++  E+V+ ++   ++   +  +   E   P  L   T+VR   G  FP+
Sbjct: 527  LSVQTVMNRSENKQEVVAITMATYNRISPENAI--PENINPDQL--ITLVRPPKGTSFPL 582

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
            G    A     K    V    ++E+ LL      L   D DVL+GH +    LDVL HR 
Sbjct: 583  GLAPLA---KQKLNGQVRLF-NNEKTLLACFCAMLRVSDPDVLIGHRLENVILDVLSHRI 638

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD---------T 727
               ++P+  +S +GR  R E P  R G+  F    +  I    +GRLLCD         T
Sbjct: 639  WDFKIPN--FSSLGRRNRREWPA-RFGKQNFNMN-NFLIKDISSGRLLCDIANEMGQSLT 694

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
              C    L E+    T +    ++ + +    H      + + S++  ++    +  L+ 
Sbjct: 695  PKCQNWDLSEMYTVTTGIEHKSIDINYQNTQYH------EDVNSMIMALQENVNNVKLTA 748

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
            E+ F + +L LT+QLTN++GN W +TL G RA R EY+LLH F    YIVPDK       
Sbjct: 749  EVSFRIQLLSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFVRNGYIVPDK------- 801

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                  SN     +NVE    E     N++S       K+   Y GGLV EP+KGL+  Y
Sbjct: 802  -----ESNKSRARKNVEHQETEG----NNSSMAPAVSSKKA-KYQGGLVFEPEKGLHKNY 851

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSS-KTTGVLPELLKNLVQRRRM 964
            IL++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +PSS K  GVLP LL+NLVQRRR 
Sbjct: 852  ILVMDFNSLYPSIIQEFNICFTTVDRNLNDIEEIPEVPSSEKEQGVLPRLLQNLVQRRRE 911

Query: 965  VKTWMKTASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            VK  M   S   I+ Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL 
Sbjct: 912  VKKLMINESDPHIRAQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTGKGREILM 971

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLY 1083
            +T  L + ++NL+V+YGDTDS+MI +G +   +A A+     + VN++YK LEID+D ++
Sbjct: 972  NTRQLAE-SMNLKVVYGDTDSVMIDTGSELYGQAIAVGLNFKKLVNERYKLLEIDIDNVF 1030

Query: 1084 KRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            K++LL  KKKYAA+ V   K+      +E KGLDM RR++  LSKEV    L+ ILS++ 
Sbjct: 1031 KKLLLHSKKKYAALNVTIDKNKQEQTSLEVKGLDMRRREYCPLSKEVSTNILNLILSDKD 1090

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             E  ++ I++ L  ++  + + ++ ++KY I   L+K P AYP  K+ P VQVAL ++++
Sbjct: 1091 SETALQEIYDYLEDIKSKVENNEIRVDKYKINTKLSKDPSAYPGGKSMPAVQVALHMRKA 1150

Query: 1203 GYSTGCSAGDTVPYIICCEQ--GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            G      AG  + ++I  E+     S S+   A+RA   +E+       + D +YY  +Q
Sbjct: 1151 GRV--VKAGSVITFVITKEKEDENKSASTTSPAERAFSLNEVMVKTNNLLPDPNYYLEKQ 1208

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS----DPSSSLLFAVGDEER 1316
            I   V RL  +IE     RL+  LGLD  K+  + +E  +     D    L   + D ER
Sbjct: 1209 IFAPVERLLENIESFDIVRLSSALGLDSRKYLQRVNEYGNGANGIDNLQPLETTISDVER 1268

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
            ++    +IL+CPSC + F    + +S   +V             +  ++C KC E +   
Sbjct: 1269 FKDTAFVILNCPSCDNEFPFGGIVASNYYTVC------------FNGIQCKKC-EHI--- 1312

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPN 1433
              S     +Q++R     +S+YY G + CDD TC   T  +++   R + D         
Sbjct: 1313 -FSTIQFTSQLERCIRSHISLYYAGWLHCDDRTCGNVTRQISVFGKRCLMDG-------- 1363

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQR 1465
               C G +  +YT+  LY QL YF  L D ++
Sbjct: 1364 ---CTGVMRYRYTDKQLYNQLLYFDSLFDCKK 1392



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 21  ARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREE--ARGFIV 78
           +R E L++L+A R GG+ S D     ++ ++ +YD + E+EY +   R+R+E     F+V
Sbjct: 6   SRLEKLKKLQAARNGGQASDD-----VEYDDVLYDELDENEYRS---RKRQELLQDDFVV 57

Query: 79  DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
           DDDGLGY D G  +DW       + +++ +  Q++ KK+ + ++  K     +R  N  +
Sbjct: 58  DDDGLGYVDRGVGDDWDNRDEYYTDEEDIVGNQKNSKKKPLTEKDTKSIENIIRAQNSKI 117

Query: 139 TAAAAM 144
           + +  +
Sbjct: 118 SISNQL 123


>gi|256271651|gb|EEU06692.1| Pol1p [Saccharomyces cerevisiae JAY291]
          Length = 1468

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 573/1058 (54%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDRPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       + 
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|190409091|gb|EDV12356.1| DNA polymerase I alpha subunit p180 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1468

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 573/1058 (54%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       + 
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|207341723|gb|EDZ69700.1| YNL102Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1386

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 369/1060 (34%), Positives = 576/1060 (54%), Gaps = 106/1060 (10%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 338  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 396

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S    +  S C  E++VD P++I  +++     
Sbjct: 397  SNIFESFVIQNRIMGPCWLDIKGADFNSI---RNASHCAVEVSVDKPQNITPTTTKT--- 450

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             +P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 451  -MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 505

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +   
Sbjct: 506  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNV 561

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 562  YLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRL 613

Query: 724  LCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIE 777
            +CD    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++
Sbjct: 614  ICDI---ANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQ 670

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
               T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IV
Sbjct: 671  ENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIV 730

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK      ++  KQR N        EE  N DA  ++       +K K    Y GGLV 
Sbjct: 731  PDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQGGLVF 767

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPEL 954
            EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP L
Sbjct: 768  EPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRL 827

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 828  LANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 887

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+
Sbjct: 888  VTNKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYR 946

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V   
Sbjct: 947  LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIH 1006

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ ILS++  E+ ++ +++ L  ++  + S  + ++KY I   L+K P+AYP  KN P 
Sbjct: 1007 VLNTILSDKDPEEALQEVYDYLEDIRIKVESNNIRIDKYKINMKLSKDPKAYPGGKNMPA 1066

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKW 1249
            VQVALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       
Sbjct: 1067 VQVALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNL 1124

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL- 1308
            + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L  
Sbjct: 1125 IPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQP 1184

Query: 1309 --FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
                + D ER++    L LSCPSC   F    + SS    VS            +  L+C
Sbjct: 1185 LETTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQC 1232

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
              C +       +P  + +Q++      +S+YY G + CDD TC   T  +++       
Sbjct: 1233 KHCEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV------- 1280

Query: 1427 RGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             G  C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1281 FGKRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1319


>gi|398364843|ref|NP_014297.3| Pol1p [Saccharomyces cerevisiae S288c]
 gi|1706503|sp|P13382.2|DPOA_YEAST RecName: Full=DNA polymerase alpha catalytic subunit A; AltName:
            Full=DNA polymerase I subunit A; AltName: Full=DNA
            polymerase alpha:primase complex p180 subunit; Short=DNA
            polymerase-primase complex p180 subunit; Short=Pol
            alpha-primase complex p180 subunit
 gi|929851|emb|CAA90524.1| DNA Polymerase I [Saccharomyces cerevisiae]
 gi|1302016|emb|CAA95978.1| CDC17 [Saccharomyces cerevisiae]
 gi|285814549|tpg|DAA10443.1| TPA: Pol1p [Saccharomyces cerevisiae S288c]
 gi|392296888|gb|EIW07989.1| Pol1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1468

 Score =  538 bits (1386), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 573/1058 (54%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       + 
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|349580835|dbj|GAA25994.1| K7_Pol1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1468

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 571/1058 (53%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG----IMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNETTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    +     ++ +A+RA   +E+         
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAGDTPALSVAERAHALNEVMIKSNNLKP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|172209|gb|AAA34888.1| polymerase I [Saccharomyces cerevisiae]
          Length = 1468

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 573/1058 (54%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCIVSAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       + 
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|363753528|ref|XP_003646980.1| hypothetical protein Ecym_5409 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890616|gb|AET40163.1| hypothetical protein Ecym_5409 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1475

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 405/1211 (33%), Positives = 617/1211 (50%), Gaps = 154/1211 (12%)

Query: 353  TLYLFGKVKAGSTHH----SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISP 408
            TL LFGKVK   T H    S  V V  + R +Y +P     +    M++ ++     I P
Sbjct: 363  TLLLFGKVK---TKHGKFISAMVQVAGLHRELYFLPR----EGKTTMEVHEE-----IIP 410

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPF 468
            +   K                     + N    P  ++YAF    IP    Y LK+  P+
Sbjct: 411  LLLDK-------------------YGLDNIRAKPTIKKYAFELPGIPKEAEY-LKVLLPY 450

Query: 469  KDP-----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQR 521
              P      +PADL G+ F  + G  ++  E F++++K+ GPSWL+I    F+     Q 
Sbjct: 451  NTPKCKNMTIPADLSGDTFYHVFGGGTNIFESFVLQQKIMGPSWLNIRNGDFNEL---QN 507

Query: 522  VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
             S C  ++ + +P+DI V    K   E PP+   ++ ++T+ N +++  E+VS ++    
Sbjct: 508  ASHCAIDVFISNPQDI-VPIQEK--LEAPPLNCVSLAVQTIMNPKENKQELVSITMTNYD 564

Query: 582  KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
                + P+   +  KP  +   T+VR L G  FP G     +  + K    ++   ++E+
Sbjct: 565  ALPQEKPI--PDTIKPNEV--VTLVRPLVGSTFPPGL----STLSKKELPGMVRMFNNEK 616

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            A+LN L   + + D DV++GH +    LDVL HRA    V +  +S  GR  R   P   
Sbjct: 617  AMLNCLCAMMKRNDPDVIIGHKLESLTLDVLSHRAFELEVQT--FSSFGRRVRKSWPDNF 674

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS-----YSLTQLAKTQLNKDRK- 755
              +    +     +    +GRLLCD    S ++ + ++     + LT++ +    KD K 
Sbjct: 675  GKKN--ANLVKFHVRDIFSGRLLCDV---SNEMGQSLTQKCQNWELTEMYQVACQKDHKA 729

Query: 756  -EVGPHDVLKMFQTLESLMEL-IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
             E+  +DV   FQ   SL  L ++     + ++ E+ F + +LPLT+QLTN++GN W +T
Sbjct: 730  IEINFNDV--RFQEDVSLFVLALKENIFASKIAAEIAFRIQILPLTKQLTNLAGNAWCQT 787

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L G RA R E++LLH F    YIVPDK     ETK  +    H       E  T+ D N 
Sbjct: 788  LGGTRAGRNEFILLHEFNRSNYIVPDK-----ETKQMRNSKQHKAN----ETTTSNDGN- 837

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
               TS ++ +     P Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTVER
Sbjct: 838  --QTSASNKK-----PKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVER 890

Query: 934  SPDGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKL 989
             P  +  +P +P S    GVLP+LL NLVQRRR VK  MK      K  + DI+QQALKL
Sbjct: 891  DPGDIEQLPEVPPSGIVQGVLPKLLANLVQRRREVKKLMKLEIDPQKKAECDIRQQALKL 950

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L + +L L VIYGDTDS+MI +
Sbjct: 951  TANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAE-SLALSVIYGDTDSVMIDT 1009

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYE 1108
            G D+  ++  I     + VN++YK LEID+D ++K++LL  KKKYAA+ V F K G    
Sbjct: 1010 GCDNYKESVNIGENFKKLVNERYKLLEIDIDNVFKKLLLHAKKKYAALNVGFDKLGNETS 1069

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             +E KGLDM RR++  LSKEV    L+ ILS++  E  ++ ++  + +++  + + ++ +
Sbjct: 1070 SLEVKGLDMRRREYCPLSKEVSTQVLNTILSDKDLESALQEVYEFMEEIRSKIENNEIRV 1129

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC-CEQGTSS- 1226
            +KY I   L+K P++YP+ K+ P VQVAL+++++G      AG  + ++I    QG  S 
Sbjct: 1130 DKYKINTKLSKDPKSYPNGKSMPAVQVALKMREAG--KVIKAGSVITFVITKGPQGKDST 1187

Query: 1227 -GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
              S+   A RA    ++     +   D  YY  +QI   V R+   +E     RL++ LG
Sbjct: 1188 DSSNSSPADRAYPLHDVMNKRNELAPDPKYYLEKQIFAPVERILERVESFDIVRLSESLG 1247

Query: 1286 LDPSKFQSKPSETMSSDPSSS-----LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            LD  ++ ++       +  SS     L   + D ER++  E L ++C  C   F    + 
Sbjct: 1248 LDSRRYINRVGSGGELNGGSSSNLQPLESTISDTERFKDTEWLDITCSICQHKFPFGGIT 1307

Query: 1341 SSICMSVSEKPSKPETEYNF-WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYY 1399
            +S               Y + +  L+C  C         S   +  Q++R     +S+YY
Sbjct: 1308 AS-------------NHYQWTYNGLQCKHCDH-----LFSLIELTCQLERSIRSHISLYY 1349

Query: 1400 KGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCH 1459
             G ++CDD TC   T  +++        G  C N   C G +  +Y++  LY QL YF  
Sbjct: 1350 AGWLLCDDPTCNNLTRQISV-------FGKRCLN-ENCTGVMRYRYSDKKLYNQLLYFDS 1401

Query: 1460 LLDTQRGIEKMEI-----------------SAKIPLEKELNKIRPVVALAASTVQRIRER 1502
            L D ++  +K E+                 S++I    E N  R    +  S VQ+  ++
Sbjct: 1402 LFDIEKN-KKQELKPLYLPNDADIPTDLLNSSQIAALSEQN--RETFNINRSVVQKYLDQ 1458

Query: 1503 CAYGWVKLNDI 1513
            C   +V + DI
Sbjct: 1459 CGRRYVDMGDI 1469


>gi|365763311|gb|EHN04840.1| Pol1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1468

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 572/1058 (54%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       + 
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T   ++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQXSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|151944432|gb|EDN62710.1| DNA polymerase I alpha subunit p180 [Saccharomyces cerevisiae YJM789]
          Length = 1468

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 365/1058 (34%), Positives = 571/1058 (53%), Gaps = 102/1058 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 420  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
            S+  E F+++ ++ GP WL I K +   + +  S C  E++VD P++I  +++      +
Sbjct: 479  SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR  
Sbjct: 534  PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +    L
Sbjct: 590  QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
            DVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+C
Sbjct: 646  DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697

Query: 726  DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
            D    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++  
Sbjct: 698  D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
             T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPD
Sbjct: 755  ITNCMISAEVSYRIQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
            K      ++  KQR N            N DA  ++       +K K    Y GGLV EP
Sbjct: 815  KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
            +KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP LL 
Sbjct: 852  EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
            NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912  NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
             +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+ L
Sbjct: 972  NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYRLL 1030

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            EID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V    L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNETTVLEVKGLDMKRREFCPLSRDVSIHVL 1090

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            + ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
            VALR++++G      AG  + ++I  +    +     ++ +A+RA   +E+         
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAGDTPALSVAERAHALNEVMIKSNNLKP 1208

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
            D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L    
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268

Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
              + D ER++    L LSCPSC   F    + SS    VS            +  L+C  
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316

Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
            C +       +P  + +Q++      +S+YY G + CDD TC   T  +++        G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364

Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
              C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401


>gi|71064097|gb|AAZ22505.1| Pol1p [Saccharomyces cerevisiae]
          Length = 1302

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 368/1060 (34%), Positives = 576/1060 (54%), Gaps = 106/1060 (10%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 254  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 312

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S    +  S C  E++VD P++I  +++     
Sbjct: 313  SNIFESFVIQNRIMGPCWLDIKGADFNSI---RNASHCAVEVSVDKPQNITPTTTKT--- 366

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             +P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 367  -MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 421

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +   
Sbjct: 422  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNV 477

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 478  YLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRL 529

Query: 724  LCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIE 777
            +CD    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++
Sbjct: 530  ICDI---ANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQ 586

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
               T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IV
Sbjct: 587  ENITNCMISAEVSYRIQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIV 646

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK      ++  KQR N        EE  N DA  ++       +K K    Y GGLV 
Sbjct: 647  PDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQGGLVF 683

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPEL 954
            EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP L
Sbjct: 684  EPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRL 743

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 744  LANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 803

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+
Sbjct: 804  VTNKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYR 862

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V   
Sbjct: 863  LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNETTVLEVKGLDMKRREFCPLSRDVSIH 922

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P 
Sbjct: 923  VLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPA 982

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKW 1249
            VQVALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       
Sbjct: 983  VQVALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNL 1040

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL- 1308
            + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L  
Sbjct: 1041 IPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQP 1100

Query: 1309 --FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
                + D ER++    L LSCPSC   F    + SS    VS            +  L+C
Sbjct: 1101 LETTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQC 1148

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
              C +       +P  + +Q++      +S+YY G + CDD TC   T  +++       
Sbjct: 1149 KHCEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV------- 1196

Query: 1427 RGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             G  C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1197 FGKRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1235


>gi|259149259|emb|CAY82501.1| Pol1p [Saccharomyces cerevisiae EC1118]
          Length = 1356

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 368/1060 (34%), Positives = 576/1060 (54%), Gaps = 106/1060 (10%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 308  LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 366

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S    +  S C  E++VD P++I  +++     
Sbjct: 367  SNIFESFVIQNRIMGPCWLDIKGADFNSI---RNASHCAVEVSVDKPQNITPTTTKT--- 420

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             +P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 421  -MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 475

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +   
Sbjct: 476  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNV 531

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 532  YLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRL 583

Query: 724  LCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIE 777
            +CD    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++
Sbjct: 584  ICDI---ANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQ 640

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
               T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IV
Sbjct: 641  ENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIV 700

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK      ++  KQR N        EE  N DA  ++       +K K    Y GGLV 
Sbjct: 701  PDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQGGLVF 737

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPEL 954
            EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP L
Sbjct: 738  EPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRL 797

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 798  LANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 857

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+
Sbjct: 858  VTNKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKKLVNERYR 916

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V   
Sbjct: 917  LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIH 976

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P 
Sbjct: 977  VLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPA 1036

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKW 1249
            VQVALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       
Sbjct: 1037 VQVALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNL 1094

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL- 1308
            + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+  +     + +  ++L  
Sbjct: 1095 IPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQP 1154

Query: 1309 --FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC 1366
                + D ER++    L LSCPSC   F    + SS    VS            +  L+C
Sbjct: 1155 LETTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQC 1202

Query: 1367 PKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAE 1426
              C +       +P  + +Q++      +S+YY G + CDD TC   T  +++       
Sbjct: 1203 KHCEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV------- 1250

Query: 1427 RGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
             G  C N   C G +  KY++  LY QL YF  L D ++ 
Sbjct: 1251 FGKRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1289


>gi|393910144|gb|EFO26754.2| hypothetical protein LOAG_01730 [Loa loa]
          Length = 1444

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 410/1208 (33%), Positives = 590/1208 (48%), Gaps = 176/1208 (14%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLF-- 389
            + +L FY LDA E       GT+YLFG++       SCCV+VKN+ R V+ +P   L   
Sbjct: 351  ESTLRFYWLDAFEDPIKIP-GTVYLFGRLINDGLSESCCVIVKNIWRQVFFLPREKLLIN 409

Query: 390  --QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              QTDE+   + + E  +I                       L ++ V      P ++++
Sbjct: 410  EVQTDEVDLTQVNEEVQKI-----------------------LRSMGVKVVKCRPCEKKF 446

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            A+    +P     VL+++Y F DP L  DL GE F  +  T ++A+E  L++  +KGPSW
Sbjct: 447  AYNDGVVPRSAQ-VLEVHYSFNDPRLSVDLSGETFSHVFNTTANAMERLLIETGMKGPSW 505

Query: 508  LSISKFSSCPAPQ-RVSWCKYEITVDSPKDIRVSSSSKHVAEVPP-VTVTAINLKTVFNK 565
            + IS    C     +VS+ K+E  VD  K ++ S S    ++ PP + +  +N+ TV N 
Sbjct: 506  VEIS---GCDVSSLQVSYVKHEFVVDM-KQMK-SISILDCSDPPPDLNLLTMNIITVINH 560

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            +++ NEIVS S +   K     P L         L  F ++ K     +P    K     
Sbjct: 561  KKE-NEIVSISCIFDRKCTTANPTL-----NRNSLERFCILTKPTLTAYPFDLKKNL--- 611

Query: 626  NSKAGSNVLCCESS-ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              + G   +  E++ ER LLN  + +L  LD D   GH+++     +L  R Q  ++  +
Sbjct: 612  -KQVGMETVVYETTNERHLLNHFLCKLQNLDPDAYAGHDLAA-QFAILSSRLQ--KLGIA 667

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             WS++GRLKRS   K+R+   +  S          AGRL+ D+ L + +L++  SY L+ 
Sbjct: 668  HWSRLGRLKRS--IKIRQTLHMKTSQ-----WELTAGRLVLDSRLSAMELVKMRSYDLSD 720

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            L+   L  +       D+   F     L+  I     DAWLS+ ++  L+ LPL  Q+T 
Sbjct: 721  LSSDLLGINHHFARKQDISANFANSVQLIRFINNSWMDAWLSLAIIAELNALPLFIQITK 780

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            I G +  +T+ G RA+R EYLLLHAF    Y+ P+K+        +K+R   G++D    
Sbjct: 781  IVGGVLSRTMLGGRAERNEYLLLHAFNKAGYVPPNKYQ-----PDSKKRKQSGLKD---T 832

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            +  ++D        HN  RKG+    Y GGLVL+PK GLYD ++LLLDFNSLYPSIIQEY
Sbjct: 833  KSVDDDLEDYKKVQHN--RKGQ----YVGGLVLDPKIGLYDTFVLLLDFNSLYPSIIQEY 886

Query: 925  NICFTTVERSPD--GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQL 980
            NICFTTV+ S      +P LPS    G+LP  +++LV+RRR VK  MK+   +  + QQ 
Sbjct: 887  NICFTTVDMSKKDKNEMPELPSDVNEGILPREIRSLVERRRDVKRMMKSEKLTQQQRQQY 946

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q  LKLTANSMYGCLGF  SRFYAKPLA LIT QGREIL  T DL++ N    VIYG
Sbjct: 947  DIRQMGLKLTANSMYGCLGFQQSRFYAKPLAALITAQGREILMHTKDLIEKN-GYSVIYG 1005

Query: 1041 DTDSIMIHSGI---DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTDS+MI++G     ++ + K +  +VI                     ++ +K+KYA +
Sbjct: 1006 DTDSVMINTGFSERSELQRVKKLGNEVI---------------------VVTEKEKYAGL 1044

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC--EDVVESIHNSLM 1155
             V   D    +  E KGLD+VRRD+S + K++G+  L  ILS +S   ++++  IH+ L 
Sbjct: 1045 AVDLNDERKTKR-EIKGLDIVRRDYSFIVKQIGNEILDIILSVQSQNRDEIIGQIHSRLR 1103

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            K+ +D+    + +  + I K LT+ P  Y +   QPH  VA RL  +G       GDT+ 
Sbjct: 1104 KLGKDIAQELLEISLFQIFKQLTRNPHEYANISVQPHAAVAQRLNATG-KFKFHQGDTIG 1162

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDE-LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            YIIC       GS     QRA H  E L+  D +  ID  YY  QQI PVVSRLC  IE 
Sbjct: 1163 YIIC-----EDGSGKPATQRAYHLTEVLESKDLR--IDFQYYLVQQILPVVSRLCVPIEE 1215

Query: 1275 TSPERLADCLGLDPSKFQSKP--------SETMSSDPSSSLLFAVGDEERYRGCEPLILS 1326
             +   +A  LGLD   ++            E   S P  SL +          CE     
Sbjct: 1216 CNEAWVAQALGLDSVAYRKHAIYEENMDREEQSQSFPHYSLEY----------CESFKFV 1265

Query: 1327 CPS--CSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
            CP+  C   F         CM   +       E   W    C  C   +         + 
Sbjct: 1266 CPNDGCKHEFLVRE-----CMVQDDN-----GEQKLWLN-DCSVCRNSLLC---FGAYLY 1311

Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC-NGRLVR 1443
            NQ++   D  +S YYK   +CDD  C Y T +L L        G  C   PRC +G + R
Sbjct: 1312 NQLQLTLDKVISDYYKVSYVCDDIGCAYRTRTLVLEW---TREGVPC---PRCKSGFMRR 1365

Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERC 1503
            +Y+   LY+QL ++  L D  + I+                         +  QR++ RC
Sbjct: 1366 EYSSKRLYEQLIFYHKLFDVAKVIDNF-----------------------TEEQRMKLRC 1402

Query: 1504 AYGWVKLN 1511
              GW + N
Sbjct: 1403 GSGWKEAN 1410


>gi|448089833|ref|XP_004196912.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
 gi|448094173|ref|XP_004197943.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
 gi|359378334|emb|CCE84593.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
 gi|359379365|emb|CCE83562.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
          Length = 1453

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 388/1177 (32%), Positives = 596/1177 (50%), Gaps = 143/1177 (12%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVV-VKNMQRCVYAIPNGPLF 389
            DD +   + LD  E        TL LFGKV          V+ ++++ + +Y +P     
Sbjct: 308  DDNTFKMFWLDYAEV-----DNTLILFGKVPTKDGRVVSGVLQIQDICKELYFLPR---- 358

Query: 390  QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL-NLNVSNYIVSPVKRRYA 448
              D  +  E D     ++P           L +  EI   LL    + +    P K +YA
Sbjct: 359  --DYRLSDEADFSNEPVNP-----------LDVHDEIVPLLLEKYGLDSIKAKPEKMKYA 405

Query: 449  FGQAEIPAGENYVLKINYPFKDPP-----LPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            F    IP  + Y LK+  PF+ P      +P++L+GE F  + G ++   E F+++R + 
Sbjct: 406  FELPGIPKEKEY-LKVLLPFRTPKNRFVNIPSNLEGETFKHVFGGNAGIFESFVLQRNIM 464

Query: 504  GPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
            GP WL ++   F+S    + VS C+ E+ V SP+ I+ S+      + P +T+++I+++T
Sbjct: 465  GPCWLEVTGADFNSI---KNVSHCQVEVAVSSPEQIKPSTQK---LDPPKLTLSSISIQT 518

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
            V + +Q+  EIVS S+        D P+   +   P  +   T+VR +     P G  + 
Sbjct: 519  VLSPQQNKQEIVSVSLATYRDIPQDAPV--DKNTPPDEI--VTLVRPVGSVALPPGLAQL 574

Query: 622  AT--DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
            A   D N +   N       E++LLN L   +   D DV +GH +    LDVL+HR    
Sbjct: 575  AQKQDLNLRTFPN-------EKSLLNCLAAIVKTTDPDVFLGHRLENISLDVLVHRMYDL 627

Query: 680  RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS 739
            +V  + WS  GR  R   P+ +  R   G   +  I     GRLLCD       +  E+ 
Sbjct: 628  KV--TTWSAFGRRNRKVWPE-KFNRNGGGFNNNLMIREIFQGRLLCD-------IANEMG 677

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQT----------LESLMELIEYGETDAWLSMEL 789
             SLT   ++    +  EV     L   +              L+  +    ++  ++ E+
Sbjct: 678  QSLTPKCQSWDLNEMYEVICGKKLPQLEVNYQNSRYSDDANFLLIALRDNASNVRITSEI 737

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
             F + +L LT+QLTN++GN W  TL G RA R E++LLH F+   YIVPD          
Sbjct: 738  SFEIQILSLTKQLTNLAGNAWSHTLSGTRAGRNEFILLHEFKRNNYIVPD---------- 787

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
               R +   ++ N ++    +AN D  T+   ++K    P Y GGLV EP+KGL+  YIL
Sbjct: 788  ---REDRYQKNSNNQQQAKLEANEDEATAVTSNKK----PKYQGGLVFEPEKGLHKNYIL 840

Query: 910  LLDFNSLYPSIIQEYNICFTTVERSPDGL-------VPHLPSSKTT-GVLPELLKNLVQR 961
            ++DFNSLYPSIIQE+NICFTTV+R    L       +P LP   ++ GVLP LL  LV R
Sbjct: 841  VMDFNSLYPSIIQEFNICFTTVDRDQYNLTLDEDRDLPFLPDGDSSQGVLPRLLNTLVSR 900

Query: 962  RRMVKTWMKTASGLKIQ--QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
            RR VK  +K     K +  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GR
Sbjct: 901  RREVKKLLKDPKITKSEKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGR 960

Query: 1020 EILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
            EIL  T  L + ++ L V+YGDTDS+MI +G++D+ +A  I  +   +VN++YK LEID+
Sbjct: 961  EILMDTRQLAE-SIGLRVVYGDTDSVMIDTGVEDLKEAIKIGEEFKVQVNERYKLLEIDI 1019

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            D ++KR+LL  KKKYAA+ V      G    ++E KGLDM RR++  LSK++  + L +I
Sbjct: 1020 DNVFKRLLLHAKKKYAAMNVSIDKTTGKEKTILEVKGLDMRRREYCQLSKDISTYVLEKI 1079

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            LS+   E  + S++  L +  + +R+ ++ ++K+ I   L+K P  YP+ K  P VQ AL
Sbjct: 1080 LSQADPEQALFSVYEYLEEEAKKIRNNEIPVDKFKINTRLSKDPNNYPNGKTMPPVQAAL 1139

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            +L++ G      AG  + Y+I  +      SS   A RA    ++ +   K   D D+Y 
Sbjct: 1140 KLRKQG--KVIKAGSVITYVITAKASEDDSSSQ--ADRAVPIQDVIR--NKLRPDPDFYL 1193

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF--QSKPSETMSSD--PSSSLLFAVGD 1313
             +QI   V RL   IEG    R+A+ LG+D  ++   S+ +++   D  P  S   ++ D
Sbjct: 1194 EKQIFAPVERLLERIEGIEMIRIAEILGIDTRRYVINSRHNDSAGGDIVPIES---SISD 1250

Query: 1314 EERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEV 1373
            EER+R    L+L C  C + F    + +S    V+            +  ++C KC    
Sbjct: 1251 EERFRQASYLVLEC-KCKAKFRFGGIMASTDYQVT------------FNGIKCAKC---- 1293

Query: 1374 EAGRISPGM-IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGT 1429
              G   P + + +Q++      +S+YY G + CDD +C   T  +++   R +G + +  
Sbjct: 1294 --GFTFPLIKLTSQLEVAIRKHISLYYCGWLKCDDASCGIETRQISVYGRRCLGASGKAY 1351

Query: 1430 VCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
                   C G +   Y++  LY QL YF  + D  + 
Sbjct: 1352 ------GCRGIMRYAYSDKALYNQLLYFDSIFDVNKA 1382


>gi|401623954|gb|EJS42033.1| pol1p [Saccharomyces arboricola H-6]
          Length = 1468

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 388/1143 (33%), Positives = 591/1143 (51%), Gaps = 135/1143 (11%)

Query: 353  TLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            TL LFGKVK  +  + S  V V  + R ++ +P           K   D  E  I P+  
Sbjct: 365  TLILFGKVKLRNDKYVSAMVQVNGLCRELFFLPREG--------KTPADVHE-EIIPLLM 415

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
             K                     + N    P K +Y+F   +IP+ EN  LK+  P++ P
Sbjct: 416  DK-------------------YGLDNIRAKPQKMKYSFELPDIPS-ENDYLKVLLPYQTP 455

Query: 472  -----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
                  +P+DL  + F  + G +++  E F+++ K+ GP WL I K +   A +  S C 
Sbjct: 456  KSSRDTIPSDLSSDTFHHVFGGNANIFESFVIQNKIMGPCWLEI-KGADFNAVRNSSHCA 514

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
             E+ VD P++I V + +K    +P +   +++++T+ N +++  EI+S ++       +D
Sbjct: 515  IEVFVDKPQNI-VPNITK---TMPDLRCLSLSMQTLMNPKENKQEIISITLSSYRNISLD 570

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
            +P+   E  KP  +   T+VR      FP+G    A  +    G   L   ++E+A+L+ 
Sbjct: 571  SPI--PENIKPEDIC--TLVRPPQSSSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSC 622

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
                L   D DV++GH +    LDVL HR     +P+  +S IGR  R   P+       
Sbjct: 623  FCAMLKMEDPDVMIGHRLQNVYLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------ 674

Query: 707  FGSGASP----GIMSCIAGRLLCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEV 757
            FG G S      I    +GRL+CD    + ++ + +     S+ L+++ +    K+ K +
Sbjct: 675  FGRGNSSMNHFFISDMCSGRLICD---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKAL 731

Query: 758  GPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
                    +Q  + S+   ++   T+  +S E+ F + +L LT+QLTN++GN W +TL G
Sbjct: 732  DIDYQNPQYQNDVNSMTMALQENITNCIISAEVSFRIQLLSLTKQLTNLAGNAWAQTLGG 791

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             RA R EY+LLH F    YIVPDK      T+  KQ                   N +N 
Sbjct: 792  TRAGRNEYILLHEFSRNGYIVPDKEGGRNRTQRQKQ-------------------NDENA 832

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
            ++  + +K K    Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ +
Sbjct: 833  SAPKNSKKAK----YQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKE 888

Query: 937  GL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
             +     VP  PS  + GVLP LL NLV RRR VK  MKT +   K  Q DI+QQALKLT
Sbjct: 889  DIDELSNVP--PSEVSQGVLPRLLANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLT 946

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG 1050
            ANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L ++ +NL V+YGDTDS+MI +G
Sbjct: 947  ANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTG 1005

Query: 1051 IDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEV 1109
             D+ A A  I     + VN++Y+ LEID+D ++K++LL  KKKYAA+ V   K+G    V
Sbjct: 1006 CDNYADAIKIGLGFKKSVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVSLDKNGNETTV 1065

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            +E KGLDM RR++  LS++V    L+ ILS++  E+ ++ ++  L  ++  + +  + ++
Sbjct: 1066 LEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYEYLEDIRTKVEANNIRID 1125

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            KY I   L+K P AYP  KN P VQVALR++++G      AG  + ++I  +  TS   +
Sbjct: 1126 KYKINMRLSKDPTAYPGGKNMPAVQVALRMRKAGRVV--KAGSVITFVITKQGETSDDEN 1183

Query: 1230 V---GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
                 +A+RA   +E+         D  YY  +Q+   V RL   I+  +  RL + LGL
Sbjct: 1184 TPAPSVAERAYALNEVMIKGNNLKPDPQYYLEKQLFAPVERLLERIDSFNVVRLTEALGL 1243

Query: 1287 DPSKFQSKPSETMSSDPSSSLL---FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSI 1343
            D  K+  +     +   +++L      V D ER++    L L CPSC   F    + SS 
Sbjct: 1244 DSKKYFKREGANGNGGDANNLQPLETTVTDIERFKDTVILELICPSCDQQFPFGGIVSSN 1303

Query: 1344 CMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
               +S            +  ++C  C +     ++S     +Q++      +S+YY G +
Sbjct: 1304 HYRMS------------YNGIQCKHCEQSFSFIQLS-----SQIEHSIRAHISLYYAGWL 1346

Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463
             CDD TC   T  L++        G  C N   C G +  KYT+  LY QL YF  L D 
Sbjct: 1347 QCDDSTCGVVTRQLSV-------FGKRCLN-EGCTGVMRYKYTDKQLYNQLLYFDSLFDC 1398

Query: 1464 QRG 1466
            ++ 
Sbjct: 1399 EKN 1401



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 37/250 (14%)

Query: 20  SARAEALERLKALRRGGRRSGDSVGYNIKLENP---IYDTVAEDEYDALVARRREE--AR 74
           S+++E L +L+ L+    R+G SV    + E     +YD V E EY A   R+R+E    
Sbjct: 2   SSKSEKLHKLRKLQAA--RNGTSVDDYEEDEEDGDRLYDEVDEKEYRA---RKRQELLHD 56

Query: 75  GFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKP 134
            F+VDDDGLGY D G EEDW   G     +D+   G  + K  + +K  KKE +  +   
Sbjct: 57  DFVVDDDGLGYVDRGVEEDWREDGNNYIDEDDEDSGSLASKDAKRKKGLKKEKDHPI--- 113

Query: 135 NPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD------ 188
                    M+  Q   + L + A   + K   + +     D++L EF   EA+      
Sbjct: 114 -------TDMLRTQHSKSTLLTHAKKAQKKSMAIDD----FDDILGEFESGEAEKPKVTL 162

Query: 189 ----RERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD-LINNFVQIQNCDVVE 243
               R     S S++ KS  SV  +  +S   T+    VK + D   + +++I +  +  
Sbjct: 163 PAKLRANLNSSPSADFKS--SVKRLNGSSNNNTSMAKRVKIDPDSSTDKYLEINSSPLKS 220

Query: 244 ESKELKWESD 253
           +S++ ++ +D
Sbjct: 221 QSRKQRYAND 230


>gi|340369430|ref|XP_003383251.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Amphimedon
            queenslandica]
          Length = 1359

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 369/993 (37%), Positives = 531/993 (53%), Gaps = 137/993 (13%)

Query: 510  ISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDV 569
            I KF+S    ++ ++   +I  DS K + V  S++H A  PP T + ++   VF      
Sbjct: 417  IMKFASKSVDRKYAFHLPDIPRDS-KYLEVRYSARHPA--PPPTSSGLSYSCVFGTNTTS 473

Query: 570  NE--IVSASV--VCCHKAKIDTPMLAS-EWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT- 623
             E  I+   +   C    K+ +P   S  W K         +  +  G+  +G   E   
Sbjct: 474  LERLIIGCGLKGPCWIDVKLPSPSTNSVSWCK---------IECITDGLTSVGVASEQAP 524

Query: 624  ---------------DRNSKAGSNV-LCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                           + ++K   N+ L   SSER+LL+  +  L K+D D+++GHN++  
Sbjct: 525  PPPLTILSLSIKTLINMHTKTKENLKLEVTSSERSLLSFFLARLAKIDPDIIIGHNLASQ 584

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
             L+ L HR   C+VP  +WS+IGRL+R+ MPK+R  R  +       I+ C  GRL+CD 
Sbjct: 585  WLETLQHRMFTCKVP--VWSRIGRLRRATMPKVRLQRGQW-------ILCC--GRLVCDV 633

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
             L +++L+R  SY LT+LA + L  + + +   D+L  F ++E +  LI +   +A LS+
Sbjct: 634  KLSAKELIRSRSYDLTELASSILQLNYQPMENEDILAAFGSIERVCHLIAHTMDEALLSL 693

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             L   LSVLPL  Q+T I+GN   +TL G R++R EYLLLHAF  + Y+ PDK       
Sbjct: 694  RLTRELSVLPLAYQITRIAGNTLSRTLLGGRSERNEYLLLHAFTQQGYLPPDKLD----- 748

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
              +  + +HG              N + + S    ++GK   +Y GGLVL+PK G YD+ 
Sbjct: 749  --SASKHHHG--------------NEEEEESAPASKRGKS--SYVGGLVLDPKTGFYDRL 790

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERS------PDGLVPHLPSSKTTGVLPELLKNLVQR 961
            ILLLDFNSLYPSIIQEYNICFTT++ +        GL+     S   G+LP  ++ LV+R
Sbjct: 791  ILLLDFNSLYPSIIQEYNICFTTIDHAHCNSDEDIGLLEPPGDSVPQGILPSQIRVLVER 850

Query: 962  RRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
            RR VK  MK    S   +QQ DI+Q+ALKLTANSMYGCLGFS+SRF+AKPLA ++T++GR
Sbjct: 851  RRQVKRLMKDPGLSPETLQQYDIRQKALKLTANSMYGCLGFSHSRFFAKPLAAVVTRKGR 910

Query: 1020 EILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
            +IL  T DL    L L+VIYGDTDSIMI SG  D+  A+++A KV  EVNK Y+ LEID+
Sbjct: 911  QILEQTRDLA-TKLGLDVIYGDTDSIMIDSGTKDLEVAESLAKKVKTEVNKLYRLLEIDV 969

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            DG++K MLLLKKKKYAAV +  ++G   E  E KGLD+VRRDW  L+K  G + L +IL+
Sbjct: 970  DGIFKCMLLLKKKKYAAVSIHSQNGKLIEKRELKGLDIVRRDWCDLAKRAGHYILDKILA 1029

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR- 1198
              + ++++E I   L +++ED+ + +V L ++VITK LTK P+ YPD K+ PHVQVA+R 
Sbjct: 1030 GHNIDELIEEIQTFLRQLREDVLNSKVDLREFVITKGLTKMPKDYPDKKSLPHVQVAMRM 1089

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            L +  Y      GD +PY++C         +V  + RA HP E+ +   +  +D  YY  
Sbjct: 1090 LSRQQY---VQPGDVIPYVVC----LMGDDNVSPSLRAYHPMEVTQ--QQLQVDHKYYLQ 1140

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKF-QSKPSETMSSDPSSSLLFAVGDEERY 1317
             Q+H VV RLC  IEG     LA+ LGLDPS + Q                  V  +E+ 
Sbjct: 1141 HQVHAVVGRLCEPIEGLDSAHLAEWLGLDPSSYVQRGGGGGGGRGDEEEEADVVLPQEK- 1199

Query: 1318 RGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGR 1377
               +PL +SCP+C  T         +                             V  GR
Sbjct: 1200 --SDPLCVSCPTCDKTISFHYTGKKVSF---------------------------VCGGR 1230

Query: 1378 ISPGMIANQVKRQADG-----FVSMYYKGLMMCDDETCKY-TTCSLNLRLIGDAERGTVC 1431
                 ++      A G     ++S+YY+G + C   +C Y T   L+  + G        
Sbjct: 1231 DCHNSLSRFYMMAALGKALRYYISLYYQGWLTC--SSCGYRTRTGLSCAVCG-------- 1280

Query: 1432 PNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
               P+ +  L  +Y+ +DLY QL  F  L  +Q
Sbjct: 1281 ---PKEDAVLREEYSSSDLYAQLCSFRDLFLSQ 1310



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 158/352 (44%), Gaps = 49/352 (13%)

Query: 266 EVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATA-GW---KEVSGGNMVLDEGKSGLN 321
           EV E + +E   D KE     AK   E  P+ + +  GW   KE    +      K  LN
Sbjct: 260 EVDESINEE---DDKENTVEQAKERRETVPVEAVSVTGWETVKEEEFSSETTPNRKEDLN 316

Query: 322 CQESEFEVDDDGS----LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQ 377
              S   + +D      + FY LDA+E L     G +YLFGK+    TH SCCVVV+N++
Sbjct: 317 IDTSSLPLQEDADGNPFIRFYWLDAYEDLY-RQPGVVYLFGKIPIQGTHVSCCVVVQNIE 375

Query: 378 RCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSN 437
           RC+Y +P   L       K  K  +E           ++DV +      A +     +  
Sbjct: 376 RCLYFLPREKLLS-----KSGKPTDED--------VSMKDVYVEFNESFAEK---HRIMK 419

Query: 438 YIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFL 497
           +    V R+YAF   +IP    Y L++ Y  + P  P    G ++  + GT++++LE  +
Sbjct: 420 FASKSVDRKYAFHLPDIPRDSKY-LEVRYSARHPAPPPTSSGLSYSCVFGTNTTSLERLI 478

Query: 498 VKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAI 557
           +   +KGP W+ + K  S P+   VSWCK E   D    + V+S     A  PP+T+ ++
Sbjct: 479 IGCGLKGPCWIDV-KLPS-PSTNSVSWCKIECITDGLTSVGVASEQ---APPPPLTILSL 533

Query: 558 NLKTVFNKRQDVNEIVSASVVCCHK----------AKIDTPM-----LASEW 594
           ++KT+ N      E +   V    +          AKID  +     LAS+W
Sbjct: 534 SIKTLINMHTKTKENLKLEVTSSERSLLSFFLARLAKIDPDIIIGHNLASQW 585


>gi|47223504|emb|CAF97991.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1753

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 375/991 (37%), Positives = 514/991 (51%), Gaps = 167/991 (16%)

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS--------NVLCCES------------ 638
            + S F VV K    IFP  F +    + S   S         V  C S            
Sbjct: 770  VFSPFAVVSKPSDCIFPYDFKEAVKKKVSLEASPLVPDCLLTVFGCPSLPSPPCQNVKVE 829

Query: 639  ---SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
               +ER LL   + +++K+D DVLVGH+I GFDL+V+L R   C+VP   WSKIGRL+R 
Sbjct: 830  MAQTERTLLGFFLAKMHKIDPDVLVGHDIFGFDLEVILQRINACKVPH--WSKIGRLRRV 887

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             MPKL  GR  F         S   GRL+CD  + +++L+R  SY LT+LA   L  +R 
Sbjct: 888  NMPKL-GGRGAFAE------RSATCGRLVCDVEISAKELIRCKSYHLTELAAHILKVERV 940

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW----- 810
             V   ++  ++     L+ L+E   TDA L +++M  L+VLPL  Q+TNI+GN+      
Sbjct: 941  AVPQENIRNLYSDSAHLLRLLELTWTDAKLILQMMCELNVLPLALQITNIAGNIMVAHPR 1000

Query: 811  -----------GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
                        +TL G R++R E+LLLHAF  K YIVPDK ++    K A+     G E
Sbjct: 1001 ALFTVKERERESRTLMGGRSERNEFLLLHAFHEKNYIVPDKPSF----KKAQLDQAEGDE 1056

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKR--GPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
            +  V                    KGKR    AYAGGLVL+PK G YDK++LLLDFNSLY
Sbjct: 1057 EVEVA-------------------KGKRRKKAAYAGGLVLDPKVGFYDKFVLLLDFNSLY 1097

Query: 918  PSIIQEYNICFTTVERSPDGL-----------VPHLPSSK-TTGVLPELLKNLVQRRRMV 965
            PSIIQE+NICFTTV+R                +P +P S    G+LP+ ++ LV+RR+ V
Sbjct: 1098 PSIIQEFNICFTTVQREAQHSQKKNEDDEQEEIPEIPDSNLEPGILPKEIRKLVERRKQV 1157

Query: 966  KTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI-- 1021
            K  MK    +     Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GRE+  
Sbjct: 1158 KGLMKQQDINPDVYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREVDF 1217

Query: 1022 ----------LRSTVDLVQN-------NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
                      LRS     Q         +NL+VIYGDTDSIMI++    + +   +  KV
Sbjct: 1218 DAHQRDGPEVLRSANKNAQICFPSRPIQMNLDVIYGDTDSIMINTNSKSLEEVFKLGNKV 1277

Query: 1065 IQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWS 1123
              EVNK YK LEID+DG++K +LLLKKKKYAA+ V+   DG      E KGLD+VRRDW 
Sbjct: 1278 KAEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVENLGDGRYSLKQELKGLDIVRRDWC 1337

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L+K+ G++ + QILS++S + +VE+I   L++V E + +G V L +Y I K LTK P+ 
Sbjct: 1338 DLAKDCGNYVIGQILSDQSRDVIVENIQKHLVEVGEKVAAGDVPLSQYEIHKALTKDPQD 1397

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII----------------CCEQG---- 1223
            YPD K+ PHV VAL +   G      AGDTV YII                CC  G    
Sbjct: 1398 YPDKKSLPHVHVALWINSQG-GRRVKAGDTVSYIICKVRVCDRKTPVSGWPCCGPGRWLT 1456

Query: 1224 ----------TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE 1273
                      T  GS++  +QRA   ++L+K +    +D  YY +QQ+HPVVSR+C  IE
Sbjct: 1457 CDRAAVCGVLTQDGSTLAASQRAYALEQLQKQEA-LSLDTQYYLAQQVHPVVSRICDPIE 1515

Query: 1274 GTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL---FAVGDEERYRGCEPLILSCPSC 1330
            G     +A  LGLDP++F+S+  +    D + ++L     + DEERY+ CE    +CP C
Sbjct: 1516 GIDGVLVATWLGLDPAQFRSQ-QQYQREDEAENMLGVSLQLSDEERYKDCEHFTFACPQC 1574

Query: 1331 SSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQ---- 1386
             +         +IC SV E  S    E +  R    P     V      P ++ N+    
Sbjct: 1575 GA--------DNICDSVFEG-SGATLEPSLMRCCHAPCQSRPVH----HPVLLCNKLLLD 1621

Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRL-IGDAERGTVCPNYP-----RCNGR 1440
            ++R    + S+   G     +      T ++   L  G   RG   P  P       +  
Sbjct: 1622 IRRHIKKYYSVSIAGASDGPEPVLLRGTLTITAPLNQGKQTRGQ-GPAGPGLLILTVSFP 1680

Query: 1441 LVRKYTEADLYKQLTYFCHLLDTQRGIEKME 1471
            L  +Y++  LY QL ++  + D      K++
Sbjct: 1681 LFSQYSDKALYNQLCFYRSIFDWDAAFSKLQ 1711



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 15/79 (18%)

Query: 443 VKRRYAFGQAEIPAGENYV-----------LKINYPFKDPPLPADLKGENFCSLLGTHSS 491
           V++ YAF   ++P+   Y+           L+ ++P     LP++LK   F  + GT++S
Sbjct: 562 VEKNYAFEIPDVPSRCEYLEVPILGEHCGALQADFPA----LPSNLKASTFSHVFGTNTS 617

Query: 492 ALELFLVKRKVKGPSWLSI 510
            LE  L+ RK+KGP WL +
Sbjct: 618 FLEQLLLSRKIKGPCWLHL 636



 Score = 43.9 bits (102), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 11 RRRSRGAEASARAEALERLKALRRGGRRS-------GDSVGYN-IKLENPIYDTVAEDEY 62
          R R    E S R  AL++L+  ++G +           SVG + ++    +Y+ V E++Y
Sbjct: 6  RSRREKKEKSGRKSALDQLQKAKKGEKIKYQRNYPLSASVGVSQVEELTSVYEEVDEEQY 65

Query: 63 DALVARRREEARGFIVDDDGLGYGDEGQE 91
            LV  R+E+   +IVDDDG+GY ++G+E
Sbjct: 66 SKLVRDRQED--DWIVDDDGIGYVEDGRE 92


>gi|335309430|ref|XP_001926748.3| PREDICTED: DNA polymerase alpha catalytic subunit, partial [Sus
            scrofa]
          Length = 701

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 314/689 (45%), Positives = 433/689 (62%), Gaps = 55/689 (7%)

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
            IFP  F +   ++N K         ++ER LL   + +++K+D D++VGHNI GF+L+VL
Sbjct: 8    IFPYDFKENIKEKNVKVE-----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVL 62

Query: 673  LHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
            L R  VC+VP   WSKIGRLKRS MPKL  GR+ FG        +   GR++CD  + ++
Sbjct: 63   LQRINVCKVP--YWSKIGRLKRSNMPKL-GGRSGFGE------RNATCGRMICDVEISAK 113

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFH 792
            +L+R  SY L++L +  L  +R  +   +V  M+     L+ L+E+   DA   +++M  
Sbjct: 114  ELIRCKSYHLSELVQHILKTERVVIPMENVRNMYSESSHLLYLLEHTWKDAKFILQIMCE 173

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L+VLPL  Q+TNI+GN+  +TL G R++R E+LLLHAF    YIVPDK  + K       
Sbjct: 174  LNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----- 228

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
                       ++L +ED + D D S   ++KG++  AY+GGLVL+PK G YDK+ILLLD
Sbjct: 229  -----------QKLGDEDEDIDGDASK--YKKGRKKAAYSGGLVLDPKVGFYDKFILLLD 275

Query: 913  FNSLYPSIIQEYNICFTTVER--------SPDG---LVPHLPSSKT-TGVLPELLKNLVQ 960
            FNSLYPSIIQE+NICFTTV+R        + DG    +P LP      G+LP  ++ LV+
Sbjct: 276  FNSLYPSIIQEFNICFTTVQRVASEAEKVTEDGEQEQIPELPDPGLEMGILPREIRKLVE 335

Query: 961  RRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
            RRR VK  MK    +   + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +G
Sbjct: 336  RRRQVKQLMKQPDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKG 395

Query: 1019 REILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEID 1078
            REIL  T ++VQ  +NLEVIYGDTDSIMI++  + + +   +  KV  EVNK YK LEID
Sbjct: 396  REILMHTKEMVQ-KMNLEVIYGDTDSIMINTNSNSLEEVFKLGNKVKSEVNKLYKLLEID 454

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            +DG++K +LLLKKKKYAA+ V+   DG      E KGLD++RRDW  L+K+ G+F + QI
Sbjct: 455  IDGIFKSLLLLKKKKYAALVVEPTSDGNYITKQEVKGLDIIRRDWCDLAKDTGNFVIGQI 514

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            LS++S + +VE+I   L+++ E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL
Sbjct: 515  LSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVAL 574

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
             +   G      AGDTV YIIC       GS++         ++L+K D    ID  YY 
Sbjct: 575  WINSQG-GRKVKAGDTVSYIIC-----QDGSNLSAXXXXXXXEQLQKHDN-LTIDTQYYL 627

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            +QQIHPVV+R+C  I+G     +A  L L
Sbjct: 628  AQQIHPVVARICEPIDGIDAVLIATWLAL 656


>gi|307207775|gb|EFN85393.1| DNA polymerase alpha catalytic subunit [Harpegnathos saltator]
          Length = 1482

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 388/1156 (33%), Positives = 582/1156 (50%), Gaps = 162/1156 (14%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVKAGS--THHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            FY LDA+E     N GT+YLFGK    S   + SCCV+V  + R +Y +P        + 
Sbjct: 400  FYYLDAYEN-PYKNPGTVYLFGKTYVASRDMYCSCCVMVHCIPRRIYLLPR-------KY 451

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
            +K  K  E    +     K+  + A  ++           +  +     K+ Y+F +   
Sbjct: 452  LKTPKSGEPQLTTIEDVYKEFDEYASKMR-----------IMEFNCKETKKHYSFEKEGT 500

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P   +Y L++ Y  + P + A+  G     + G+  +ALEL L++RK+KGP WL +   S
Sbjct: 501  PKTSDY-LEVRYNARYPAIEANYSGPAIERVFGSTVNALELLLIERKIKGPGWLDVKNVS 559

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
              P   R +WC+ +I V S  D  VS  S+  A+ PP+ +  +N++   N +   NE+V 
Sbjct: 560  --PTAGRFAWCQ-QIVVTSDID-NVSLCSQDNAK-PPMMIATLNVRMSLNSKLQ-NEVVM 613

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVL 634
             +V+  HK  +D      E  KP     F  V +     +P    ++  D   +  +  +
Sbjct: 614  VAVLIHHKYNVD-----KEPPKPPYDRQFCFVTRPRDISWP----RQVRDVLPRVPNTEI 664

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
                +E  LL  L+  + K D D++VG++ + F  DVL+ R    +V  S W+++GRLK 
Sbjct: 665  IKCETESELLEELLTLMQKADPDLIVGYDCA-FQFDVLMQRMFALKV--SNWNRMGRLK- 720

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKD 753
            S  P L +G+ +              GR +CD  + +++L L+  SY L  L    L   
Sbjct: 721  STTPPLLRGKIVLNQA--------FVGRPICDIQISAKELNLKVRSYDLLSLCSAVLKTK 772

Query: 754  R---KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
                KE+ P +    + T + +  LI     +A   + ++  L+V+PL  Q+T ++GN+ 
Sbjct: 773  EHECKEITPAETPLYYNTADKITSLIHATLKEAKYIITMVMDLNVIPLALQITCLAGNIL 832

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             +TL G RA+R EYLLLHAF  K+Y+ PDK       K  K+R N G             
Sbjct: 833  SRTLLGGRAERNEYLLLHAFHLKEYVTPDK-------KTEKKRDNDGPR----------- 874

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                           K+  AY GGLVL+PKKG YDK +LL+DFNSLYPSIIQEYN+CFTT
Sbjct: 875  ---------------KKAAAYIGGLVLDPKKGFYDKLVLLMDFNSLYPSIIQEYNLCFTT 919

Query: 931  VERSPDGLVPHLP---SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLD--IQQQ 985
            V  +    V HL    S+  TGV+P  +  LV+ R+ +K  MKT +    Q++D  I+Q 
Sbjct: 920  VPGAAYAEVEHLSIPDSTLETGVIPTEIHKLVKSRQQIKQLMKTPNLTPEQRMDYHIRQM 979

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ALKLTANSMYGCLG ++ RFYAK LA LIT +GREIL  T  LV+               
Sbjct: 980  ALKLTANSMYGCLGATHCRFYAKGLAALITAKGREILEDTKHLVEK-------------- 1025

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDG 1104
                          +  ++++EVN +YK +E+D+DG+++ +LLL+KKKYAAV + +   G
Sbjct: 1026 --------------LQYEIMREVNNRYKKVELDIDGVFRYLLLLQKKKYAAVTMTKLPSG 1071

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
              +   E KGLD+VRRDW  L+ E G   L  +L ++S E  +E +   L  V + ++ G
Sbjct: 1072 QLHLAQEHKGLDIVRRDWCPLACETGKKILDILLCDQSSETRLEQVVQILQNVAKSVKEG 1131

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
               +  +VITK L+K P+AYPD K   HV VALRL ++G      AGDT+PYII CE GT
Sbjct: 1132 TAPMSSFVITKQLSKNPDAYPDKKQLSHVMVALRLNKAG-GRMWKAGDTLPYII-CEDGT 1189

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
             + ++    +RA H DE+K  + K  +D++YY   QI PVV R+C  IEG     LA+ L
Sbjct: 1190 EASAT----ERAYHIDEVKNSE-KLKVDVNYYLLSQIFPVVLRICEPIEGIDDVFLANNL 1244

Query: 1285 GLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPAVCSS 1342
            GL   +F  KP + ++ + + +L  ++ D ER+  C PL   C +  C++      +  +
Sbjct: 1245 GL---QFIYKP-KAIACEATLNLPLSIND-ERFDNCVPLTFKCRNERCNTEI---IIKDT 1296

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP----GMIANQVKRQADGFVSMY 1398
            I            TE++  R      CP   +  ++ P      I N V+      +  Y
Sbjct: 1297 I------------TEFHSGRQFSLSMCPN--QDCKLPPWRYANAIQNMVQLAMRKAIGKY 1342

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNG-RLVRKYTEADLYKQLTYF 1457
            Y G + C++  C   T     RL  D  R    P+ P C    + R Y+  +LY QL Y+
Sbjct: 1343 YNGWLECENPLCSNRT----RRLPLDFARKF--PDCPVCKDISMARVYSGTELYNQLYYY 1396

Query: 1458 CHLLDTQRGIEKMEIS 1473
              + D  + I K  +S
Sbjct: 1397 HRMFDIGQPIYKHLLS 1412



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 8/84 (9%)

Query: 8  VAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVA 67
           +GR + +  + + R  ALE+LK  R G R+    VG   +LEN +YD V E EY   V 
Sbjct: 21 TSGRSKRQRTDKTGRLSALEKLKEARSGKRKY--EVG---ELEN-VYDEVDEKEYSNTVL 74

Query: 68 RRREEARGFIVDDDGLGYGDEGQE 91
          +R+ +   +IVDD G GY ++G+E
Sbjct: 75 KRQRD--DWIVDDGGSGYVEDGRE 96


>gi|361131944|gb|EHL03559.1| putative DNA polymerase alpha catalytic subunit [Glarea lozoyensis
            74030]
          Length = 1354

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 341/989 (34%), Positives = 519/989 (52%), Gaps = 125/989 (12%)

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKI-DTPMLASEWKKPGMLSHFTVV 606
            + PP+T+ +I ++TV N + +  EI++ S    H   + DT    S  K P     FT++
Sbjct: 456  DAPPLTLMSIAMRTVLNVKDNKQEILAISARIYHDISLTDT---TSPEKLP--CRSFTII 510

Query: 607  RKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
            R +    FP+GF+ E   R       ++     E+ +L+  + +L  +D DVLVGH + G
Sbjct: 511  RPVASN-FPLGFDSEVKKR----AKGLVKLVKQEQEILSFFLAQLQTVDPDVLVGHQLEG 565

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLL 724
             D  +LL R Q  + P   WS+IGR++RS+ P    + G   F         S ++GRLL
Sbjct: 566  VDFSILLSRLQAKKTPQ--WSRIGRMRRSQWPSSMGKMGGNFFAE------RSLLSGRLL 617

Query: 725  CDTF--LCSRDLLREVSYSLTQLAKTQL-NKDRKEVGPHDVLKMFQTL-ESLMELIEYGE 780
            CD         + +  S+SLT++    L    R+EV     LK + T  + LM+ + + E
Sbjct: 618  CDLANDAGKSTMTKCTSWSLTEMCSIYLPGTLRREVDNEAALKTWATTKDGLMDYVNHCE 677

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
             D +    L   + +LPLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK
Sbjct: 678  ADTFFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDK 737

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
              +         +    +E+ N EE    D               K+   Y GGLV EP+
Sbjct: 738  AVF---------KGRQQIEEENDEEGGAADV--------------KKKDKYKGGLVFEPE 774

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLK 956
            KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R+     +  VP +P  +  G+LP+L+ 
Sbjct: 775  KGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTKLSDDEEQVPEVPEDQELGILPKLIA 834

Query: 957  NLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
             LV RRR VK+ MK  +A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L 
Sbjct: 835  TLVSRRRQVKSLMKGKSATAEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLT 894

Query: 1015 TQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
            T +GREILRST +L ++N +L+VIYGDTDS+MI++ +D++  A  +  +  + VN +YK 
Sbjct: 895  TYKGREILRSTKELAESN-SLQVIYGDTDSVMINANVDNVDDALKVGNEFKKAVNDRYKL 953

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            LEID+D +++R+LL  KKKYAA+ +   DG   + +E KGLDM RR++  LSKEV    L
Sbjct: 954  LEIDIDNVFRRILLQAKKKYAAINLVQIDGKFVDKMEVKGLDMKRREYCNLSKEVSSKLL 1013

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            ++ILS    + V+  IH  L ++   MR  ++  +KY I   L K P+ YP+A + P VQ
Sbjct: 1014 NEILSGDESDVVITRIHEYLREIATKMREDEIPTQKYTIYTKLGKAPKDYPNADSMPQVQ 1073

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            VALR    G +      D + YI+    G    SS   A+R+  P ++ K D     D++
Sbjct: 1074 VALREMSRGKT--VRKDDVMAYIVT---GDGKNSSEPPAKRSYTPQDVGKADSGLKPDVE 1128

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDE 1314
            +Y  +QI P V R+  +          +  G + ++  S  S+             + D 
Sbjct: 1129 WYLYKQIFPPVERITNN----------NSSGGNETEIHSLESQ-------------IDDS 1165

Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVE 1374
             R+     L L C +C   FD   +  S+                     +C +     +
Sbjct: 1166 VRFMDASRLSLRCRACKRNFDFEGLVESVG--------------------QCSQAGITCQ 1205

Query: 1375 AGR-ISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTV 1430
             G+ +S   +  Q++ Q     S YY+G ++CDD+ C   T  +++   R +G   +G  
Sbjct: 1206 CGQTLSTLSVVAQLEHQIRKQTSKYYEGWLICDDQACGNRTRQMSVYGHRCLG--PKGLA 1263

Query: 1431 CPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ------RGIEKMEISAKIPLEKELNK 1484
                  C G++  +Y+E  +Y QL YF  L D +      RG +K +I A      E N+
Sbjct: 1264 HG----CYGKMRYEYSEKMMYNQLLYFSSLFDVEKAKSLARGTDKEQIFALA----EHNR 1315

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDI 1513
            +R         V +  ++C   WV+++++
Sbjct: 1316 VR--FDTLKGVVGKYLDKCGRQWVQMDEL 1342



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 42/188 (22%)

Query: 301 AGWKEVSGGNMVLDEGKSGLNCQESEFE----VDDDGSLPFYILDAHEQLSGANMGTLYL 356
           + W +V+    V+D  +S       + +    +++DGSL F+  D  E       G+L L
Sbjct: 300 SSWNDVTQKLNVMDSSQSSETVTFGKLDYTDAIEEDGSLKFFWTDYTEV-----NGSLCL 354

Query: 357 FGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKK 414
           FGKVK      H SC V V N+ R ++ +P                  E R   M    K
Sbjct: 355 FGKVKNKKNGAHVSCFVKVDNVLRKLFFLP-----------------REYRQQNM----K 393

Query: 415 LQDVALGLKT---EIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKD- 470
             D  +G+K    E+   +  + V  + + P  R+YAF   ++P    Y LK+ YP+ + 
Sbjct: 394 DTDEEVGMKEVYEEVDEMMGRMRVGMHKMKPCTRKYAFEHEDVPKEGEY-LKLLYPYSNS 452

Query: 471 -----PPL 473
                PPL
Sbjct: 453 DSMDAPPL 460



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 25  ALERLK-ALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGL 83
           AL R K A  R   +SG    Y ++ +  +Y+ V ED Y  +V R R     F++DD+G 
Sbjct: 6   ALARAKFAELRANVQSGKKRTYEVEQQEDLYEEVDEDGYKKVV-RERLNQDDFVIDDNGE 64

Query: 84  GYGDEGQEEDWSVAGLPSSSDDE 106
           GY D+G+EE     G  + S++E
Sbjct: 65  GYADDGREEWDRQPGYGTESEEE 87


>gi|254578760|ref|XP_002495366.1| ZYRO0B09592p [Zygosaccharomyces rouxii]
 gi|238938256|emb|CAR26433.1| ZYRO0B09592p [Zygosaccharomyces rouxii]
          Length = 1456

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 392/1150 (34%), Positives = 580/1150 (50%), Gaps = 143/1150 (12%)

Query: 353  TLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAF 411
            TL LFGK+KA   +  S  V +  + R +Y +P           K  +D  +  I  +  
Sbjct: 343  TLVLFGKIKARDGSLVSGMVQINGICRELYILPRED--------KTPQDVHDEIIPLLMG 394

Query: 412  RKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
            +  L ++    K+E                  K +YAF   +IP   +Y LK+  P   P
Sbjct: 395  KYGLDNIRA--KSE------------------KMKYAFELPDIPREADY-LKVLMPINTP 433

Query: 472  -----PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
                  +P DL  + F  + G  SSA E F+V+ K+ GP WL I K     A Q  S C 
Sbjct: 434  KCKYETIPPDLSSDTFYHVFGGKSSAFESFVVQNKIMGPCWLEI-KNGDFSALQNASNCS 492

Query: 527  YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
             E+ VD P++++    +K++ E+  V++T   ++T+ N +++  EIV+ ++       +D
Sbjct: 493  VELAVDRPQNVK-PLDAKNIPELNGVSLT---IQTIMNVKENKQEIVAITLSSYRGIAVD 548

Query: 587  TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
            +P+   E  +P  ++  T+VR   G  FP G    A   + K    V  C ++E+ LL+ 
Sbjct: 549  SPI--PEDLQPNDVT--TLVRPPVGSSFPSGLKGIA---DQKLKGQVRFC-NNEKILLSC 600

Query: 647  LMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI 706
                L + D D+L+GH +    LDVL+HR     +P+  +S +GR  R   P        
Sbjct: 601  FCALLLRSDPDILIGHRLESLQLDVLVHRLHELNIPT--FSALGRRARRAWPDR------ 652

Query: 707  FGSGASP----GIMSCIAGRLLCDTFLCSRDLLREVS-----YSLTQLAKTQLNKDRKEV 757
            FG   S      I   IAGRLLCD    + D+ + ++     + L ++      KD   +
Sbjct: 653  FGKNNSNLIHFFIQELIAGRLLCDI---ANDMGQSLTPKCQTWDLPEMYLVACGKDSTPL 709

Query: 758  -----GPH-----DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
                  PH     D + M     +L E I+    ++ +  E+ F + +L LT+QLTN++G
Sbjct: 710  DINYQNPHYREDADTMAM-----ALRENIK----NSMIIAEISFRIQLLSLTKQLTNLAG 760

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            N W +TL G RA R EY+LLH F    YI+PDK       + +K+    G  D       
Sbjct: 761  NAWSQTLGGTRAGRNEYILLHEFSRNGYILPDKEN--SRNRTSKRPDTTGAPD------- 811

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                    D+ + D     +   Y GGLV EP+KGL+  Y+L++DFNSLYPSIIQE+NIC
Sbjct: 812  -------GDSGNGDPVVSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNIC 864

Query: 928  FTTVERSPDGL--VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
            FTTV+R+ +    +P +PS+    GVLP LL NLVQRRR VK  M T     K  Q DI+
Sbjct: 865  FTTVDRNLEDTDELPEVPSNDGGKGVLPRLLANLVQRRREVKKIMATERDPHKRTQCDIK 924

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T  L ++ L L V+YGDTD
Sbjct: 925  QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-LELTVVYGDTD 983

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-K 1102
            S+MI S  D+ A A  +  +  + VN++YK LEID+D ++K++LL  KKKYAA+ V   K
Sbjct: 984  SVMIDSKCDNYADAIKVGNEFKKLVNERYKLLEIDIDNVFKKLLLHAKKKYAALTVSLDK 1043

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            +G    ++E KGLDM RR++  LS++V    L+ +LSE   E  +  I+  L +V+  M 
Sbjct: 1044 EGNERTILEVKGLDMKRREFCPLSRDVSIHVLNTVLSEDDSEKALSDIYEYLERVRVQME 1103

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            + ++ ++KY I   L+K P +YP+ K+ P VQVALR+++ G      AG  + ++I  + 
Sbjct: 1104 NNEIRVDKYKINTKLSKDPNSYPNGKSMPAVQVALRMRKVGRVV--KAGTVITFVITKQD 1161

Query: 1223 GT--SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             +         + +RAR  +E+         D  YY  +QI   V RL   IE     RL
Sbjct: 1162 NSELEDKEIPPVPERARALNEVMVKGNNLRPDPAYYLEKQIFAPVERLLERIESFDVVRL 1221

Query: 1281 ADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDC 1336
               LGLD  ++    Q+  +     D    L   + D ER+R  +PL + CP C   F  
Sbjct: 1222 TQSLGLDTRRYLNRGQTAENSAGGIDSLQPLETTIPDAERFRDVQPLQIRCPQCDQEFPF 1281

Query: 1337 PAVCSSICMSVSEKPSKPETEYNF-WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
              + SS               Y   +  L+C  C         +P  +  Q++R     +
Sbjct: 1282 GGIASS-------------NHYMMCYNGLQCKHCNH-----LFTPLQLTCQLERCIRLHI 1323

Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
            S+YY G + CDD TC  +      R I  +  G  C N   C G +  +Y++  LY QL 
Sbjct: 1324 SLYYAGWVQCDDRTCNNSV----RRQI--SVFGKRCLN-DGCTGVVHYRYSDKQLYNQLL 1376

Query: 1456 YFCHLLDTQR 1465
            YF  L D ++
Sbjct: 1377 YFDSLFDCEK 1386



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 89/218 (40%), Gaps = 32/218 (14%)

Query: 20  SARAEALERLKALR--RGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFI 77
           S+RAE L +L+ L+   GG    D        ++ +YD + E EY  +  +   +   F+
Sbjct: 2   SSRAEKLRKLQKLQASHGGNSGNDGN------DDRLYDEIDEKEYRHMKYKELLQD-DFV 54

Query: 78  VDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPS 137
            DDDG GY D G E+   V     S +D   D   + KK + E + K  NN N      S
Sbjct: 55  EDDDGFGYVDRGVED---VEEDHYSDEDIENDNVNNRKKSK-ETKAKSANNNN----GSS 106

Query: 138 LTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVS 197
                 M+  QR S  L       K  DE         D++L E+  +   +    R V 
Sbjct: 107 ERNIGDMLRLQRASVQLNKPTKKAKDIDE--------FDDILGEYENEPMVKPTHIRPVL 158

Query: 198 SNIKSFVSVNSVKTN---SQLVTNSTNSVKENSDLINN 232
           S      +  SVK N   SQ V+N    V    DL NN
Sbjct: 159 SPPSINRNNTSVKRNIPASQEVSNKRLKV----DLENN 192


>gi|237844121|ref|XP_002371358.1| DNA polymerase alpha catalytic subunit [Toxoplasma gondii ME49]
 gi|211969022|gb|EEB04218.1| DNA polymerase alpha catalytic subunit [Toxoplasma gondii ME49]
 gi|221506357|gb|EEE31992.1| DNA polymerase alpha catalytic subunit, putative [Toxoplasma gondii
            VEG]
          Length = 2017

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 436/1406 (31%), Positives = 629/1406 (44%), Gaps = 332/1406 (23%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA--------------- 362
            +G    +++  V +DG+LPFY LDA E+      GTLYLFGKV                 
Sbjct: 420  AGDQGSDNQLPVCEDGTLPFYFLDAWEE-----AGTLYLFGKVWPAAAKREKEGAEGTIP 474

Query: 363  ----GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKL----------------EKDAE 402
                G    SCCVVV++M   ++       F+T E +++                + DA+
Sbjct: 475  QKYRGCPPQSCCVVVRDMMVPLF-------FRTREQVEITSSLAGLLEGESEENPKDDAD 527

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS----NYIVSPVKRRYAFGQAEIPAGE 458
             S       R++++      K      L  L          +  V R YAF   ++P G 
Sbjct: 528  ASEEREQELRRRVERRMEITKAFFKQDLPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGR 587

Query: 459  NYVL-KINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS-S 515
            N    K+  P   P L P DL+GE +  + G   S +EL LVKR++KGP WL I  FS  
Sbjct: 588  NQTFVKVFVPASAPTLNPEDLEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIENFSRP 647

Query: 516  CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV----------PPVTVTAINLKTV--- 562
              A +  SWC++E+ + S KD+R+ ++     +           PP+TV +++ K+V   
Sbjct: 648  ASAFEHSSWCQHEVYIHSHKDVRLWNAFNKATQARYPDGPLPPPPPLTVVSLSAKSVQVP 707

Query: 563  ----FNKRQDVN-EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI---- 613
                     D + ++  AS      A ID            +      VR   G      
Sbjct: 708  SGPGAASHLDTDRQLAMASFFVYRDANIDDQNAQPRLSPQNVFCGIRRVRTAGGATARVN 767

Query: 614  ---FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                P+ F ++ T    K G  V     +E+ LL   +  L   D D+LVGHN+ G D +
Sbjct: 768  AEGLPLQFYEQCT----KQGFGVF---DAEKTLLLNFINRLAAADPDILVGHNVYGSDFE 820

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI-------------FGSGASPGIMS 717
            +L  R  V  +P  +W ++ RLKR +  K R                  FG+    G   
Sbjct: 821  LLGQRCAVHGLP--VWHRLSRLKRPKHVKPRAASASGGSAARREGLDGSFGASGLWGGRL 878

Query: 718  CIAGRLLCDTFLCSRDLL-REVSYSL---------------------TQLAKTQLNKDRK 755
               GRL+CDT++ + +LL   V+Y L                     T + + ++ KD +
Sbjct: 879  LTVGRLVCDTYMQAHELLGHRVNYDLVPLMQDLFLASPAQQPAGGAPTSVWEAKIQKDIR 938

Query: 756  EVGPH----DVLKMFQTLES--LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
             + P     ++L+ FQ  E   L+  ++    + ++++ L + L+ LPLTR+LT I GNL
Sbjct: 939  ALKPFPQPPELLEFFQRREPQPLLVCLQMCVQETFMTVVLCWRLNCLPLTRELTTIGGNL 998

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDK-------------FTYVKETKMAKQRSNH 856
            W ++LQ  RA+R  +LLLH F  +K+I PDK                       +  S  
Sbjct: 999  WARSLQNQRAERNAFLLLHEFHREKFICPDKDDPYARGAPVRRPHAGPGRGGPRRGPSAS 1058

Query: 857  GVEDRNVEELTN--------EDANFDNDTSHNDHRKG------KRGPAYAGGLVLEPKKG 902
            G  D +  E+           +   + + ++  HR+G      +   +YAGGLVLEP+ G
Sbjct: 1059 GARDEDPWEVEGGGQEVGVAGEGRDEEEAANEGHREGEEKVGARAKASYAGGLVLEPRVG 1118

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVER-------------SPDGLV---------- 939
            LYD ++LLLDFNSLYPSIIQEYN+CF+TV+R              PDG +          
Sbjct: 1119 LYDTFVLLLDFNSLYPSIIQEYNVCFSTVKRPVRTRISRVQATNGPDGEIADAFREPDDR 1178

Query: 940  --PHLPS------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
              PH         + T G+LP +L+ LVQRRR VK  MK  S  +K    +I+Q ALKLT
Sbjct: 1179 NLPHAAEEDVQGIASTPGLLPRILRQLVQRRRAVKASMKGESNPVKRATQEIKQLALKLT 1238

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG 1050
            ANS+YGCLGFS SRFYAK +A  ITQQGR IL +  D V+  L LEV+YGDTDSIMI++G
Sbjct: 1239 ANSIYGCLGFSRSRFYAKEIAAFITQQGRNILMAAKDKVERILRLEVVYGDTDSIMINTG 1298

Query: 1051 IDD-------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA------V 1097
            + D        A A  +  +V  E+NK YK LEIDL+G+++R+LLLKKKKY         
Sbjct: 1299 LHDDGGEGKTYAAAVRLGEQVKAEINKSYKKLEIDLEGVFRRLLLLKKKKYVCCIVVDYA 1358

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL------------------- 1138
            K Q+K       +E+KGLD+VRRDW+ L+K VG+  L  I                    
Sbjct: 1359 KRQYK-------LEQKGLDIVRRDWAKLTKVVGNQLLQIIFRIAQKDAALAPVSTPAADA 1411

Query: 1139 ----------SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP--- 1185
                      ++ + + VVE +H  L +V + +R+G V LE +VITK LTKPP+ Y    
Sbjct: 1412 SKDEKAKSNETKYAVDTVVEELHEKLREVGKQLRAGGVPLEFFVITKALTKPPQMYARGA 1471

Query: 1186 -DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS------------------ 1226
              A   PHVQVALR++  G S     G+ +PY+IC E    +                  
Sbjct: 1472 GGAIMHPHVQVALRMQSRGLSV--KPGNEIPYVICSEASVRAFLAAKSEAEGGKGGEPGA 1529

Query: 1227 -------------------GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
                                  +  A+RA HP E+  G+    ID +YY  QQ+ P + R
Sbjct: 1530 GQEAGNREADTAEKAKEGRSGPLSPAERAFHPREV-AGNPLLKIDAEYYLEQQLLPPIQR 1588

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSS-----------LLFAVGDEER 1316
            +CA +EGTS  RLA+CLGLD SK          +D  S            +      EE+
Sbjct: 1589 MCAFVEGTSASRLAECLGLDGSKHTRLEGTIGETDDCSRDAREKAGEERIMALISKSEEK 1648

Query: 1317 YRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
            Y+  + P+ L C +C +T     V                      + +RCP C      
Sbjct: 1649 YKMYKLPINLPCVACKATIMGKDVL---------------------QFMRCPSC-----T 1682

Query: 1376 GRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYP 1435
              ISP  + N V+       + + +  + C     ++  C              VC   P
Sbjct: 1683 WWISPSNLRNFVRLTLAALQNKFGRPRLRCSSCHERFDRCPPASSFASGLRSRFVC---P 1739

Query: 1436 RCNGRLVRKYTEADLYKQLTYFCHLL 1461
            RC         E DL ++L   CH L
Sbjct: 1740 RCE--------EGDLREELN--CHDL 1755



 Score = 40.8 bits (94), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 9/72 (12%)

Query: 25 ALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRREEARGFIVDDDGL 83
          ALE+++  RRG  ++ +   Y +K EN  IY+TV E++Y  L   RR  A+ +I   DG 
Sbjct: 11 ALEKIRRQRRGEAKASEQ--YEVKDENAEIYETVTEEDYQRLKQTRR--AQEWI---DGE 63

Query: 84 GYGDEGQEEDWS 95
          GY D+G EE W+
Sbjct: 64 GYSDDG-EEWWA 74


>gi|342875492|gb|EGU77242.1| hypothetical protein FOXB_12251 [Fusarium oxysporum Fo5176]
          Length = 1161

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 331/893 (37%), Positives = 492/893 (55%), Gaps = 89/893 (9%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNG 386
            +++DGSL F+  D  E       G+L LFGKV  K   ++ SC V V N+ R +Y +P  
Sbjct: 330  IEEDGSLNFFWTDYTEV-----NGSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLPRQ 384

Query: 387  PLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRR 446
               Q  E     +  EE  +             + +  EI   +  +NV  Y +    R+
Sbjct: 385  HRLQDGE-----ETGEEVEM-------------MNVYDEIDTMMTKMNVGMYKIKACTRK 426

Query: 447  YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPS 506
            YAF   ++P    Y +K+ YP+  P +  +  GE +  + G++++  E F++ + + GP 
Sbjct: 427  YAFELRDVPKEAQY-MKLLYPYNKPEVDPNRPGETYSHVFGSNTALFEQFVLWKNIMGPC 485

Query: 507  WLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
            WL I   +     +  S CK E+  D P  + V S S ++ + PP+T+ +++L+T FN+R
Sbjct: 486  WLKIED-ADFDKLKNASHCKLEVLADHPNMVSVLSESDNL-DAPPLTLMSVSLRTAFNER 543

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
             +  EI++ S     K  +     A   K P     FTV+R   G  FPMGF+  A  RN
Sbjct: 544  DNKQEILAISARIYEKVSLSDTTPAE--KLP--CRTFTVIRP-HGQAFPMGFDHLAKKRN 598

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
                  ++  +  E  +L   + +L   D DV++GH + G D  VLL+R    ++P   W
Sbjct: 599  R----GLIVLKKQEADILAFFLAQLDVADPDVILGHQLEGVDYSVLLNRLYEKKIPG--W 652

Query: 687  SKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----S 739
            S++GRL+RS+ P    + G  +F           ++GRLLCD    + D  + V     S
Sbjct: 653  SRLGRLRRSQWPSSIGKTGGNVFAE------RQILSGRLLCD---LANDAGKSVMFKCQS 703

Query: 740  YSLTQLAKTQLNKD--RKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVL 796
            +SLT++    L+ D  R++      LK + +  + L++ I + E D      L   + +L
Sbjct: 704  WSLTEMCSLYLSGDNRRRDFDNEVALKTWAREKQGLLDYITHMEADTHYIAALALGVQML 763

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PLT+ LTN++GN W +TL G RA+R EY+LLH F   KYI PDK T+    +  ++    
Sbjct: 764  PLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFYRNKYICPDKQTF----RSRQRAEEA 819

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
              E+  VE    +                     Y GGLV EP+KGLYDK++L++DFNSL
Sbjct: 820  QREEEAVEGKKKD--------------------KYKGGLVFEPEKGLYDKFVLVMDFNSL 859

Query: 917  YPSIIQEYNICFTTVERSP----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-- 970
            YPSIIQE+NICFTTV+R      +  VP +P ++  G+LP L+  LV RRR VK+ MK  
Sbjct: 860  YPSIIQEFNICFTTVDRPATNGEEDEVPEVPINQDQGILPRLIATLVSRRRQVKSLMKDK 919

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             A+  ++   DI+Q ALKLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +L +
Sbjct: 920  KATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTKELAE 979

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
            +N +L+VIYGDTDS+MI++ +D++A A  +     + VN++YK LEID+D +++R+LL  
Sbjct: 980  SN-SLQVIYGDTDSVMINANVDNVADAFKVGNDFKKAVNEQYKLLEIDIDNVFRRILLQA 1038

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KKKYAA+ +  KDG   E +E KGLDM RR++  LSKE+    L++ILS    E  +  I
Sbjct: 1039 KKKYAAINLVEKDGKFIEKMEVKGLDMKRREYCALSKEISQHLLNEILSGDDTEVSIARI 1098

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
            H  L  +   MR   + ++KY+I   L K P  YPD+ + P VQVALR    G
Sbjct: 1099 HEYLSDIAGKMREQTIPVQKYIIHTQLGKAPNDYPDSNSMPQVQVALREMAKG 1151



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 26  LERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGY 85
           L  LKALR  G++  D+  Y +   + +YD V ED Y  +V R R     F+VDD+G GY
Sbjct: 7   LAELKALRESGKKVFDT--YKVADVDNLYDEVDEDGYKKVV-RERLNQDDFVVDDNGEGY 63

Query: 86  GDEGQEEDWS-VAGLPSSSDDESLDGQRSIKKQRIEKRGKK 125
            D+G+ EDW  V    S S++E+    R  KK R E++ K+
Sbjct: 64  ADDGR-EDWDRVQAYGSESEEEATFRGRPTKKNRQEEQAKR 103


>gi|221485502|gb|EEE23783.1| DNA polymerase alpha catalytic subunit, putative [Toxoplasma gondii
            GT1]
          Length = 2017

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 446/1450 (30%), Positives = 640/1450 (44%), Gaps = 340/1450 (23%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA--------------- 362
            +G    +++  V +DG+LPFY LDA E+      GTLYLFGKV                 
Sbjct: 420  AGDQGSDNQLPVCEDGTLPFYFLDAWEE-----AGTLYLFGKVWPAAAKREKEGAEGTIP 474

Query: 363  ----GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKL----------------EKDAE 402
                G    SCCVVV++M   ++       F+T E +++                + DA+
Sbjct: 475  QKYRGCPPQSCCVVVRDMMVPLF-------FRTREQVEITSSLAGLLEGEGEENPKDDAD 527

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS----NYIVSPVKRRYAFGQAEIPAGE 458
             S       R++++      K      L  L          +  V R YAF   ++P G 
Sbjct: 528  ASEEREQELRRRVERRMEITKAFFKQDLPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGR 587

Query: 459  NYVL-KINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS-S 515
            N    K+  P   P L P DL+GE +  + G   S +EL LVKR++KGP WL I  FS  
Sbjct: 588  NQTFVKVFVPASAPTLNPEDLEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIENFSRP 647

Query: 516  CPAPQRVSWCKYEITVDSPKDIR--------------------------VSSSSKHVAEV 549
              A +  SWC++E+ + S KD+R                          VS S+K V +V
Sbjct: 648  ASAFEHSSWCQHEVYIHSHKDVRLWNAFNKATQARYPDGPLPPPPPLTVVSLSAKSV-QV 706

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P     A +L T    RQ    +  AS      A ID            +      VR  
Sbjct: 707  PSGPGAASHLDT---DRQ----LAMASFFVYRDANIDDQNAQPRLSPQNVFCGIRRVRTA 759

Query: 610  DGGI-------FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
             G          P+ F ++ T    K G  V     +E+ LL   +  L   D D+LVGH
Sbjct: 760  GGATARVNAEGLPLQFYEQCT----KQGFGVF---DAEKTLLLNFINRLAAADPDILVGH 812

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI-------------FGS 709
            N+ G D ++L  R  V  +P  +W ++ RLKR +  K R                  FG+
Sbjct: 813  NVYGSDFELLGQRCAVHGLP--VWHRLSRLKRPKHVKPRAASASGGSAARREGLDGSFGA 870

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLL-REVSYSL---------------------TQLAK 747
                G      GRL+CDT++ + +LL   V+Y L                     T + +
Sbjct: 871  SGLWGGRLLTVGRLVCDTYMQAHELLGHRVNYDLVPLMQDLFLASPAQQPAGGAPTSVWE 930

Query: 748  TQLNKDRKEVGPH----DVLKMFQTLES--LMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++ KD + + P     ++L+ FQ  E   L+  ++    + ++++ L + L+ LPLTR+
Sbjct: 931  AKIQKDIRALKPFPQPPELLEFFQRREPQPLLVCLQMCVQETFMTVVLCWRLNCLPLTRE 990

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK-------------FTYVKETK 848
            LT I GNLW ++LQ  RA+R  +LLLH F  +K+I PDK                     
Sbjct: 991  LTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPDKDDPYARGAPVRRPHAGPGRGG 1050

Query: 849  MAKQRSNHGVEDRNVEELTNEDANF--------DNDTSHNDHRKG------KRGPAYAGG 894
              +  S  G  D +  E+     +         + + ++  HR+G      +   +YAGG
Sbjct: 1051 PRRGPSASGARDEDPWEVEGGGQDVGVAGEGRDEEEAANEGHREGEEKVGARAKASYAGG 1110

Query: 895  LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------------SPDGLV-- 939
            LVLEP+ GLYD ++LLLDFNSLYPSIIQEYN+CF+TV+R              PDG +  
Sbjct: 1111 LVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVKRPVRTRISRVQATNGPDGEIAD 1170

Query: 940  ----------PHLPS------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDI 982
                      PH         + T G+LP +L+ LVQRRR VK  MK  S  +K    +I
Sbjct: 1171 GFREPDDRNLPHAAEEDVQGIASTPGLLPRILRQLVQRRRAVKASMKGESNPVKRATQEI 1230

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q ALKLTANS+YGCLGFS SRFYAK +A  ITQQGR IL +  D V+  L LEV+YGDT
Sbjct: 1231 KQLALKLTANSIYGCLGFSRSRFYAKEIAAFITQQGRNILMAAKDKVERILRLEVVYGDT 1290

Query: 1043 DSIMIHSGIDD-------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            DSIMI++G+ D        A A  +  +V  E+NK YK LEIDL+G+++R+LLLKKKKY 
Sbjct: 1291 DSIMINTGLHDDGGEGKTYAAAVRLGEQVKAEINKSYKKLEIDLEGVFRRLLLLKKKKYV 1350

Query: 1096 A------VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL----------- 1138
                    K Q+K       +E+KGLD+VRRDW+ L+K VG+  L  I            
Sbjct: 1351 CCIVVDYAKRQYK-------LEQKGLDIVRRDWAKLTKVVGNQLLQIIFRIAQKDAALAP 1403

Query: 1139 ------------------SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
                              ++ + + VVE +H  L +V + +R+G V LE +VITK LTKP
Sbjct: 1404 VSTPAADASKDEKAKSNETKYAVDTVVEELHEKLREVGKQLRAGGVPLEFFVITKALTKP 1463

Query: 1181 PEAYP----DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS---------- 1226
            P+ Y      A   PHVQVALR++  G S     G+ +PY+IC E    +          
Sbjct: 1464 PQMYARGAGGAIMHPHVQVALRMQNRGLSV--KPGNEIPYVICSEASVRAFLAAKSEAEG 1521

Query: 1227 ---------------------------GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
                                          +  A+R+ HP E+  G+    ID +YY  Q
Sbjct: 1522 GKGGEPGAGQEAGNREADTAEKAKEGRSGPLSPAERSFHPREV-AGNPLLKIDAEYYLEQ 1580

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSS-----------LL 1308
            Q+ P + R+CA +EGTS  RLA+CLGLD SK          +D  S            + 
Sbjct: 1581 QLLPPIQRMCAFVEGTSASRLAECLGLDGSKHTRLEGTIGETDDCSRDAREKAGEERIMA 1640

Query: 1309 FAVGDEERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCP 1367
                 EE+Y+  + P+ L C +C +T     V                      + +RCP
Sbjct: 1641 LISKSEEKYKMYKLPINLPCVACKATIMGKDVL---------------------QFMRCP 1679

Query: 1368 KCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAER 1427
             C        ISP  + N V+       + + +  + C     ++  C            
Sbjct: 1680 SC-----TWWISPSNLRNFVRLTLAALQNKFGRPRLRCSSCHERFDRCPPASSFASGLRS 1734

Query: 1428 GTVCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIR 1486
              VC   PRC  G L  +    DLY  L      L      ++M + A+  +E+   K  
Sbjct: 1735 RFVC---PRCEEGDLREELNCHDLYMYLDEMQFYLSGDVTAQQM-VLAEREMERNPEKTA 1790

Query: 1487 PVVALAASTV 1496
             ++    +TV
Sbjct: 1791 SIMRFRRATV 1800



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 9/72 (12%)

Query: 25 ALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRREEARGFIVDDDGL 83
          ALE+++  RRG  ++ +   Y +K EN  IY+TV E++Y  L   RR  A+ +I   DG 
Sbjct: 11 ALEKIRRQRRGEAKASEQ--YEVKDENAEIYETVTEEDYQRLKQTRR--AQEWI---DGE 63

Query: 84 GYGDEGQEEDWS 95
          GY D+G EE W+
Sbjct: 64 GYSDDG-EEWWA 74


>gi|449016652|dbj|BAM80054.1| DNA polymerase alpha, catalytic subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1527

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 436/1427 (30%), Positives = 679/1427 (47%), Gaps = 165/1427 (11%)

Query: 12   RRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENP--IYDTVAEDEYDALVARR 69
            R SRGA   A AEAL RL   R  GRR  +    + +LE P  +Y+ V ED Y +  A  
Sbjct: 3    RASRGANGKA-AEALRRLAEARESGRRPSE----DYELEEPERVYEAVDEDTYRSRRAEE 57

Query: 70   REEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKEN-N 128
            R + R FIV D    +    ++ED        S    S   +    +QR  +RG      
Sbjct: 58   RHQVRSFIVKDRAT-FSGSSEDEDCLTYSEEESEGRTSARSRVRAGRQRSRERGSSATVA 116

Query: 129  QNVRKPNPS-LTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES---ESVIDEVLAEFAP 184
            +N+ KP  +       + G  ++     +T++    + +    S   +S++DE+LAE   
Sbjct: 117  RNLLKPTQTRFLGQPTVPGTLKIEQAALATSVASHGRVQSASSSGRRKSLVDELLAE--Q 174

Query: 185  DEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEE 244
            DE      R  V+S  +   S       +Q  T+   S         + +      +  E
Sbjct: 175  DEWAAGEERTFVASRARGNDSRPLDAQPNQHPTSGVISAPRRRRGAQDLLVESGPQIPLE 234

Query: 245  SK---ELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATA 301
            S+   +   E D  T  T+  ++  ++     +   D+ E   ++A +  ++  +L   A
Sbjct: 235  SRSDTDHDHEHDPRTPSTQEKSWTTLQAANASDSENDM-EVNDVDADLLLDR--VLELEA 291

Query: 302  GWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGK-- 359
             +   +  N        G+   E +   D   +L F+ LD  E L       +++FG+  
Sbjct: 292  EYAHEATEN--------GVTAVEGDLPGDRVPALTFFALDMQEILD-----KVFVFGRAL 338

Query: 360  VKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK------DAEESRISPMAFRK 413
            +   S+  + CV V  ++R ++ +P   +   D+     +        +E R++P++   
Sbjct: 339  LPETSSSTAVCVQVCGIEREIFFLPRMYVDCPDDEQATPRPYPILASEQEPRLAPIS--- 395

Query: 414  KLQDVALG-LKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE-NYVLKINYPFKDP 471
              + +A   +  E+ + LL   ++ +     +R +   Q +    E    L++ YP K  
Sbjct: 396  --EGIAFSCVYEEVKSVLLARGITEFTARREERCFLTNQIDRRRAEVTSCLRVRYPAKYR 453

Query: 472  PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV 531
             L   L+G+ F  ++G+ +S LE F+++R V GP W+ +S  S       +S C++ + V
Sbjct: 454  ALETALEGQTFSQIVGSRNSPLENFILERCVPGPCWVQVSNASRVTG---ISSCRWSLNV 510

Query: 532  DSPKDIRVSSSSKHVAEVPP-VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
            DSP   RV ++ +  A  PP + V   +L+T+        EI     + C     + P  
Sbjct: 511  DSPAQFRVLAAEEIPASQPPGLRVLTFSLRTIAEASPTSFEI----AIICATVFDNVPTN 566

Query: 591  ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
             +  + P     F +VR      FP GF +  + R        +  E +E A++ R + E
Sbjct: 567  RNLGETPHPSMQFGIVRPPAHEAFPFGFERMISGRR-------ILRERNELAMIERFLRE 619

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL-KRSEMPKLRKGRTIFGS 709
            + +LD DV++ H +     DV L R +  R+    W ++GRL +R  +   R      G 
Sbjct: 620  INQLDPDVIICHQLLTSQFDVFLKRMRELRLRD--WWQLGRLVQRRPLQDFRSHMQASGR 677

Query: 710  GASPGIMSCI-AGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKDRKEVGPHD------ 761
            G +P +   I AGRLLCDT   +R+ L +E  Y L  L +  L   +      D      
Sbjct: 678  GLNPALARQIFAGRLLCDTEEAAREYLHKEKDYGLRVLCRALLGSYKSAATGSDGEWSAQ 737

Query: 762  -VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
             +  +++  + L+  I+    DA LS  L   L+V+PLT +L +I G  WGKT+ G RA+
Sbjct: 738  AMRSVYREAKHLVGAIDSCLEDAKLSFLLADRLAVIPLTNELASICGYPWGKTMLGNRAE 797

Query: 821  RVEYLLLHAF-RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            R+EYLLLH   R+ KY+ PD+ +  + +   K+ S             + D   D   + 
Sbjct: 798  RIEYLLLHEIHRSGKYVAPDRSSGQRASIRPKRPSFDPTAQ------ASADKRLDAARTP 851

Query: 880  NDHRKG-------------------KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
            +  ++G                   +R PAY GG VLEPK+GLY   +L LDF+SLYPSI
Sbjct: 852  SSTQRGASTPTTTEGSALELASSAKRRKPAYQGGYVLEPKRGLYGTCVLQLDFSSLYPSI 911

Query: 921  IQEYNICFTTVERSPDG--LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKI 977
            IQEYNI FTTV    +G  L+P    S   G+LP +L+ LVQRRR V+   +  +S ++ 
Sbjct: 912  IQEYNIDFTTVTLDSEGNALLPK--HSNELGILPTVLRRLVQRRRQVREAARNESSPVRQ 969

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---- 1033
            QQL  +Q ALKLTAN++YGCLG+ +SRF+ + LAELIT+ GRE L  TV+L +  L    
Sbjct: 970  QQLHTRQLALKLTANALYGCLGYVHSRFHIRELAELITRTGRETLERTVELAEQVLLRKL 1029

Query: 1034 ----------------NLEVIYGDTDSIMIHSGI----DDIAKAKAIAGKVIQEVNKKYK 1073
                               VIYGDTDSI I SGI    D + +   +   + +EVNK+Y 
Sbjct: 1030 DDLVAASNVPDRASGVQPRVIYGDTDSIFIDSGIPFSSDSVQRIMELGHAIRREVNKQYH 1089

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             LEI+++ LY RMLLL KKKYAA+K Q   G   +  E KG+++VR DW  L    G+F 
Sbjct: 1090 TLEIEIEALYVRMLLLNKKKYAALKYQIDTGSFSK--EVKGIEVVRHDWCALVAAAGNFA 1147

Query: 1134 LSQILSERSC--EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
            L QIL + +C   +  + I   L ++   MR G+V L+++VITK LT  P+AY DA  QP
Sbjct: 1148 LDQIL-DPTCVATEAKDRICKYLSELATRMRQGRVDLDQFVITKQLTHDPDAYDDAAIQP 1206

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIIC---CEQGTSSGSSVG--------IAQRARHPD 1240
            HVQVALR ++ GY    +AG  + Y++C   C+     G ++         +A+RA HPD
Sbjct: 1207 HVQVALRRRERGYVV--AAGTFIQYVVCREPCDTRLRRGEAIDGARAPIDTVARRACHPD 1264

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF--------Q 1292
            E ++  G   +DID+Y   Q+H V+ R+  S+ G     LA CLGL+   F        Q
Sbjct: 1265 EYREAQGMLHLDIDWYLENQLHAVLRRITESVPGLDAAALACCLGLNAQPFLRARIMADQ 1324

Query: 1293 SKPSETMSSDPSSSLLFAVGDEERYRG-CEPLIL----SCPSCSSTF 1334
              P  T SS      L     E+ +    +PL++     CP+C   F
Sbjct: 1325 MTPGSTASSQDQRRKLLV---EDLFGALSDPLVVPFTAQCPACDQRF 1368


>gi|312068656|ref|XP_003137316.1| hypothetical protein LOAG_01730 [Loa loa]
          Length = 1409

 Score =  501 bits (1291), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 400/1189 (33%), Positives = 575/1189 (48%), Gaps = 182/1189 (15%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLF-- 389
            + +L FY LDA E       GT+YLFG++       SCCV+VKN+ R V+ +P   L   
Sbjct: 347  ESTLRFYWLDAFEDPIKIP-GTVYLFGRLINDGLSESCCVIVKNIWRQVFFLPREKLLIN 405

Query: 390  --QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
              QTDE+   + + E  +I                       L ++ V      P ++++
Sbjct: 406  EVQTDEVDLTQVNEEVQKI-----------------------LRSMGVKVVKCRPCEKKF 442

Query: 448  AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
            A+    +P     VL+++Y F DP L  DL GE F  +  T ++A+E  L++  +KGPSW
Sbjct: 443  AYNDGVVPRSAQ-VLEVHYSFNDPRLSVDLSGETFSHVFNTTANAMERLLIETGMKGPSW 501

Query: 508  LSISKFSSCPAPQ-RVSWCKYEITVDSPKDIRVSSSSKHVAEVPP-VTVTAINLKTVFNK 565
            + IS    C     +VS+ K+E  VD  +    S S    ++ PP + +  +N+ TV N 
Sbjct: 502  VEIS---GCDVSSLQVSYVKHEFVVDMKQ--MKSISILDCSDPPPDLNLLTMNIITVINH 556

Query: 566  RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
            +++ NEIVS S +   K     P L         L  F ++ K     +P    K     
Sbjct: 557  KKE-NEIVSISCIFDRKCTTANPTL-----NRNSLERFCILTKPTLTAYPFDLKKNL--- 607

Query: 626  NSKAGSNVLCCESS-ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              + G   +  E++ ER LLN  + +L  LD D   GH+++     +L  R Q  ++  +
Sbjct: 608  -KQVGMETVVYETTNERHLLNHFLCKLQNLDPDAYAGHDLAA-QFAILSSRLQ--KLGIA 663

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             WS++GRLKRS   K+R+   +  S          AGRL+ D+ L + +L++  SY L+ 
Sbjct: 664  HWSRLGRLKRS--IKIRQTLHMKTSQ-----WELTAGRLVLDSRLSAMELVKMRSYDLSD 716

Query: 745  LAKTQLNKDRKEVGPHDVLKMF----QT-LESLMELIEY---GETDAWLSMELMFHLSVL 796
            L+   L  +       D+   F    QT L + ++LI +      DAWLS+ ++  L+ L
Sbjct: 717  LSSDLLGINHHFARKQDISANFAYVIQTNLRNSVQLIRFINNSWMDAWLSLAIIAELNAL 776

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            PL  Q+T I G +  +T+ G RA+R EYLLLHAF    Y+ P+K+        +K+R   
Sbjct: 777  PLFIQITKIVGGVLSRTMLGGRAERNEYLLLHAFNKAGYVPPNKYQ-----PDSKKRKQS 831

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
            G++D    +  ++D        HN  RKG+    Y GGLVL+PK GLYD ++LLLDFNSL
Sbjct: 832  GLKD---TKSVDDDLEDYKKVQHN--RKGQ----YVGGLVLDPKIGLYDTFVLLLDFNSL 882

Query: 917  YPSIIQEYNICFTTVERSP--DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA-- 972
            YPSIIQEYNICFTTV+ S      +P LPS    G+LP  +++LV+RRR VK  MK+   
Sbjct: 883  YPSIIQEYNICFTTVDMSKKDKNEMPELPSDVNEGILPREIRSLVERRRDVKRMMKSEKL 942

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE------------ 1020
            +  + QQ DI+Q  LKLTANSMYGCLGF  SRFYAKPLA LIT QGRE            
Sbjct: 943  TQQQRQQYDIRQMGLKLTANSMYGCLGFQQSRFYAKPLAALITAQGRECFSRYGGSTRND 1002

Query: 1021 ------ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI---DDIAKAKAIAGKVIQEVNKK 1071
                  IL  T DL++ N    VIYGDTDS+MI++G     ++ + K +  +VI      
Sbjct: 1003 PIIVLQILMHTKDLIEKN-GYSVIYGDTDSVMINTGFSERSELQRVKKLGNEVI------ 1055

Query: 1072 YKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
                           ++ +K+KYA + V   D    +  E KGLD+VRRD+S + K++G+
Sbjct: 1056 ---------------VVTEKEKYAGLAVDLNDERKTKR-EIKGLDIVRRDYSFIVKQIGN 1099

Query: 1132 FCLSQILSERSC--EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN 1189
              L  ILS +S   ++++  IH+ L K+ +D+    + +  + I K LT+ P  Y +   
Sbjct: 1100 EILDIILSVQSQNRDEIIGQIHSRLRKLGKDIAQELLEISLFQIFKQLTRNPHEYANISV 1159

Query: 1190 QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE-LKKGDGK 1248
            QPH  VA RL  +G       GDT+ YIIC       GS     QRA H  E L+  D +
Sbjct: 1160 QPHAAVAQRLNATG-KFKFHQGDTIGYIIC-----EDGSGKPATQRAYHLTEVLESKDLR 1213

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKP--------SETMS 1300
              ID  YY  QQI PVVSRLC  IE  +   +A  LGLD   ++            E   
Sbjct: 1214 --IDFQYYLVQQILPVVSRLCVPIEECNEAWVAQALGLDSVAYRKHAIYEENMDREEQSQ 1271

Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
            S P  SL +          CE     CP+  C   F         CM   +       E 
Sbjct: 1272 SFPHYSLEY----------CESFKFVCPNDGCKHEFLVRE-----CMVQDDN-----GEQ 1311

Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
              W    C  C   +         + NQ++   D  +S YYK   +CDD  C Y T +L 
Sbjct: 1312 KLWLN-DCSVCRNSLLC---FGAYLYNQLQLTLDKVISDYYKVSYVCDDIGCAYRTRTLV 1367

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI 1467
            L        G  C   PRC    +R+    ++Y       H+   Q+G 
Sbjct: 1368 LEW---TREGVPC---PRCKSGFMRR----EMYDTSIPLFHVSIHQKGF 1406


>gi|209882968|ref|XP_002142918.1| DNA polymerase family protein [Cryptosporidium muris RN66]
 gi|209558524|gb|EEA08569.1| DNA polymerase family protein [Cryptosporidium muris RN66]
          Length = 1562

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 374/1103 (33%), Positives = 557/1103 (50%), Gaps = 209/1103 (18%)

Query: 330  DDDGSLPFYILDAHEQLSGANMGTLYLFGKV----------KAGSTHHSCCVVVKNMQRC 379
            D +  L FYI+D  E     N G +YLFGK+          +    + S C++++N  R 
Sbjct: 293  DVNECLSFYIVDIAEDF---NSGEIYLFGKIFTQNLSNMSNEQMELNESACIIIQNTYRS 349

Query: 380  VYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYI 439
            +Y  P              KDA     +P+       D+   +  E+ +     N+    
Sbjct: 350  LYIYP--------------KDAYPEHPNPV-------DICQSVAKEMISIRKKYNIPQIK 388

Query: 440  VSPVKRRYAFGQAEIPAGENY-VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
            + PV R +AF Q+ +  G N   LK+ YP K+P LP ++KGE F  + G + S +E F++
Sbjct: 389  MKPVIRNFAFTQSGVKYGPNQPFLKVLYPSKNPNLPNNIKGETFSHIFGLNKSLVENFII 448

Query: 499  KRKVKGPSWLSISKFSSCPA--PQRVSWCKYEITVDSPKDIRV----------------- 539
            KR++KGPSWL I K     +    R S CK EI V + K+IR+                 
Sbjct: 449  KRRIKGPSWLKIMKPYKVVSVGDGRRSQCKVEIHVSTWKNIRIWNALISKKLLINKNTEI 508

Query: 540  ---------------------SSSSKH----VAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                                  S++ +    +   PP+T+ +I ++        V+EI S
Sbjct: 509  LDDCNVDSKAISNNLNDINGDDSTTNYDDGPIPNSPPLTLVSIKVQCGRQGNSTVSEIYS 568

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLS-----HFTV-----VRKLDGGIFPMGFNKEATD 624
             S+V      ID  +   E+    +L      H+ +     +R+ +    P   N E  +
Sbjct: 569  ISIVALRNQNIDE-LCWDEFNVDNILQNKSCKHYCIYPWVGIRRYNINT-PFPINVE--E 624

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
              +K+G   +   SSE++LL   ++ + +LD D+++GHNI    LD+L +R      P+ 
Sbjct: 625  YMNKSG---IYYYSSEKSLLLAFVMAISQLDPDIIIGHNIWNEHLDILCNRLLTLNTPN- 680

Query: 685  MWSKIGRLK---RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR-EVSY 740
            +W K+G+L     S     ++      SG    I + + GRL+CDT L SR+ L+   +Y
Sbjct: 681  IW-KLGKLNVFGSSLGSSFKQSLQKLPSGIK-RIQALLTGRLICDTCLSSREFLKSRTNY 738

Query: 741  SLTQLAKTQLNKDRKEV----GPHDVLKMFQTLESLMELIE----YGETDAWLSMELMFH 792
             L  +       D K      G + ++ +++++ S +E I         +A   ++L+FH
Sbjct: 739  QLHSICMDIFPNDVKLHSALEGSNQIIDLYKSVYSSIETIHKSICRNFYEALGVLKLLFH 798

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L VLPLTR+LTNI+G LW K+L   RA+R EYLLLH F   K++ PDK T +     ++ 
Sbjct: 799  LQVLPLTRELTNIAGFLWSKSLLNLRAERNEYLLLHEFHQAKFVTPDKITKISSYNKSQS 858

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            +  H  ED +  E  +E                    +Y GGLVLEP  GLYD++++LLD
Sbjct: 859  QRLH--EDTDTPEAEDE-------------------ISYTGGLVLEPLIGLYDRFVILLD 897

Query: 913  FNSLYPSIIQEYNICFT------------TVERS-------------------------P 935
            FNSLYPSIIQE+NICFT              ++S                          
Sbjct: 898  FNSLYPSIIQEFNICFTKRNIGKISNIDDITKKSQEVSNLNSEAEIYSDENIFEYQGDIK 957

Query: 936  DGLVPHLPSSKTTGV-LPELLKNLVQRRRMVKTWMK---TASGLKIQQLDIQQQALKLTA 991
            D L+ +  + K   + LP +L++LV+RR+ +K  +K   + S  +  QL+I+Q ALKLTA
Sbjct: 958  DSLMNNFGTLKFDKIILPGILESLVRRRKHIKDILKNLNSTSPSRRLQLEIRQLALKLTA 1017

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI 1051
            NS+YGCLG+ NSRFYA+ LA  IT  GR+IL+S  + V++ L L+VIYGDTDSIM+++GI
Sbjct: 1018 NSLYGCLGYKNSRFYARDLASTITLYGRQILQSAKNKVEDELKLQVIYGDTDSIMVNTGI 1077

Query: 1052 DD------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV------ 1099
             D        +   +A ++ Q +NK YK LEIDLD + +R+LLLKKKKYA VKV      
Sbjct: 1078 LDEGDGYGYQQVLKLANQIKQSINKDYKKLEIDLDDVLQRLLLLKKKKYACVKVLDYYKR 1137

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
            QFK       +E KGLD+VRRDWS L++++    L+ I S +  E+V+  I   L  + E
Sbjct: 1138 QFK-------LEYKGLDLVRRDWSKLTRDISKAILNSIFSNKPIEEVILDILTLLEDLNE 1190

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             + +  +  + ++ITK L K P+ Y D    PHV VA RL  SG+      G  + YIIC
Sbjct: 1191 KLNNKTIEADYFIITKALNKLPQYYSDPFQLPHVIVAKRLINSGHPI--RPGTEISYIIC 1248

Query: 1220 CEQ-----------GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
             E+              SGSS+G  +RA   DE+K+ + +  IDI++Y SQQ+ P +SRL
Sbjct: 1249 MEELPNLEISQNSNKPQSGSSLG--RRAYSLDEVKQQNLE--IDIEWYKSQQLLPPISRL 1304

Query: 1269 CASIEGTSPERLADCLGLDPSKF 1291
            CA I G    RLA CLGLD   F
Sbjct: 1305 CAPIPGLEIYRLASCLGLDSKYF 1327



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 15/114 (13%)

Query: 15  RGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEAR 74
           R    ++ AEAL  L+ +R G  R+ D   Y ++ E  IYD V E EY  +   RR+   
Sbjct: 2   RNRTKNSTAEALSTLRKVREGKIRAIDV--YLVENE-KIYDEVDEIEYQKICEERRKS-- 56

Query: 75  GFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENN 128
            F+VDDDG+GY D+G +   +   +P          ++  K+ RI+++ K+  N
Sbjct: 57  DFVVDDDGIGYQDDGHDLLDNYYHIP----------EQDYKQNRIDEKKKRRKN 100


>gi|397638381|gb|EJK73045.1| hypothetical protein THAOC_05357 [Thalassiosira oceanica]
          Length = 1023

 Score =  498 bits (1281), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 307/724 (42%), Positives = 414/724 (57%), Gaps = 89/724 (12%)

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            +QLTNI+GNLW  T++G RAQR EYLLLH F   KYI P+K T       AKQR      
Sbjct: 302  QQLTNIAGNLWNATIKGNRAQRSEYLLLHEFHRLKYIKPEKIT-------AKQRRE---- 350

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
              + EE   + A             GK    YAGGLVL+PKKGLYD +ILLLDFNSLYPS
Sbjct: 351  --DAEEAGGKAAG------------GKSKKGYAGGLVLDPKKGLYDSFILLLDFNSLYPS 396

Query: 920  IIQEYNICFTTVERSPD-----------GLVPHLPS-SKTTGVLPELLKNLVQRRRMVKT 967
            +IQEYN+CFTT++ + D             +P LP  S   GVLP ++K+LV+RRR VK 
Sbjct: 397  LIQEYNLCFTTMDWAKDKDIADEAGAQENQLPSLPDESLDRGVLPRVIKSLVERRRNVKK 456

Query: 968  WMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            +MK+     K ++L+I+Q ALKLTANSMYGCLGF NSRFYA+P+A L+T  GR+ L+ TV
Sbjct: 457  FMKSEKDADKKEELNIRQLALKLTANSMYGCLGFQNSRFYARPIAALVTAMGRQTLQRTV 516

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAI---AGKVIQEVNKKYKCLEIDLDGLY 1083
            D+ Q  + L+VIYGDTDSIMI++ I D+ +   +     KV +EVN+ YK LE+++DG++
Sbjct: 517  DITQTTIGLDVIYGDTDSIMINTRITDLEEYSTVLELGNKVKREVNRLYKTLELEIDGIF 576

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEV---IERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            + MLLLKKKKYAA+ +   DG   +     E KGLD+VRRDW L SK+ G + + QILS 
Sbjct: 577  RSMLLLKKKKYAALTIT-TDGPGGKFKFDKELKGLDLVRRDWCLQSKDSGKYVIDQILSG 635

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
               E +V +IH+ L  V + MRSG+++L+KYVITK L K P  YPD K+ PHV VA  + 
Sbjct: 636  EDRELIVSNIHDHLENVAKKMRSGELSLDKYVITKGLNKHPNEYPDGKSLPHVHVAKTML 695

Query: 1201 QSGYSTGCSAGDTVPYIIC----CEQGTSSG--SSVGIAQRARHPDELKKGDGKWMIDID 1254
            ++      S GD +PY+I      E+G +S   S    ++RARHPDE+++  G+   DID
Sbjct: 696  KN--HKAVSIGDHIPYVITESKDAEEGGNSAANSKKNSSERARHPDEIERSSGELKPDID 753

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQS-----KPSETMSSDPSSSLLF 1309
            +Y + QI P +SRLC  IEGTSP  LA+ LGLD SK+++        + +   P+S L  
Sbjct: 754  WYLNNQILPTISRLCEPIEGTSPGILAEKLGLDSSKYKAISVNIDEDDIVDYTPASCL-- 811

Query: 1310 AVGDEERYRGCEPLILSCPSCSSTFDCPAVCS---------SICMSVSEKPSKPETEYNF 1360
               DEER++  E   + C SC +  + P V           + C S    P+      N 
Sbjct: 812  --PDEERFKDVEKFNVLCSSCGTESEFPGVFRLVKDSDSGMTFCQSGFRCPNPSCHSPNN 869

Query: 1361 WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLR 1420
            W       C  ++  G     ++   V+R+       YY GL  CDD  C   T  +++ 
Sbjct: 870  WGEADLFSCTAKILNGM---NLLKQNVQRK-------YYDGLTRCDDPMCDLETRQVSVY 919

Query: 1421 LIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEK 1480
                      C     CNGR+   YTE+ L  QL Y   L D     +K+E S     EK
Sbjct: 920  --------EGCCLKAGCNGRMRTVYTESSLQTQLKYLDSLFDMAHAKKKLEGSGSTITEK 971

Query: 1481 ELNK 1484
            E++K
Sbjct: 972  EVDK 975


>gi|397575369|gb|EJK49658.1| hypothetical protein THAOC_31441 [Thalassiosira oceanica]
          Length = 1287

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 400/1247 (32%), Positives = 608/1247 (48%), Gaps = 146/1247 (11%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKVKA------GSTHHSCCVVVKNMQRCVYAIP--- 384
            +L  Y  DA E+      G +YL+G V+A      G  + SCCV V N QR +  +P   
Sbjct: 99   TLDLYWTDAAER-----RGAVYLYGLVRAPADEDGGPAYQSCCVEVTNNQRSLLVLPRKR 153

Query: 385  ------NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNV--- 435
                   G     D    L +     +++  A R+ L D    L  EI   L+   V   
Sbjct: 154  LGAFADGGLCPDRDLFPPLTEPPASGKVAGAAERRFLFD----LYGEIKRLLIPSVVPEG 209

Query: 436  SNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADL---KGENFCSLLGTHSSA 492
              +    V R YAFG   +P      L++ Y F+ PP    +    G  F  +LG+ +  
Sbjct: 210  EGFTADLVTRPYAFGDPGVPREPTRYLRVKYDFQYPPPDWTVCSRGGATFERILGSGAER 269

Query: 493  LELFLVKRKVKGPSWLSISKFSSCPAPQ-RVSWCKYEITVDSPKDIRVSSSSKHVAEVPP 551
                   +   GP    + +    PA   R S    ++ V   +    + S + V   PP
Sbjct: 270  DGELAAGQGHHGPG---MDQAVLRPAGGGRASHELVQMGVPRWRARLETISPESVPPPPP 326

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            ++   + +KTV N R    EI   S +   +  +++   AS+ +    +S  T+VR +D 
Sbjct: 327  ISTVTLAIKTVLNPRSHRREIAVVSAIRHGRVMLES---ASD-ESTRNISQITLVRPVDF 382

Query: 612  G-------IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
            G        FP   ++E   R    G  V C    ERALL+ L+  +   D DV+V H+ 
Sbjct: 383  GGSDAAAARFPRDMDEECRRR---FGGIVRC--RDERALLSGLLARIVAWDPDVVVSHDG 437

Query: 665  SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLL 724
             G D+DVLL R     V +  WS IGR +   +P    G   FG      +   + GRLL
Sbjct: 438  WGRDVDVLLDRCADLGVRA--WSMIGRRRDPRLP----GPAAFGDSGEGAVGGALEGRLL 491

Query: 725  CDTFLCSRDLLR-EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDA 783
            CDT + S+DLL+ + SY L +L +TQL  +R E+   DV     +    ++L ++   DA
Sbjct: 492  CDTKVLSKDLLKNQTSYELAELTRTQLRTERLEIDEADVPLWCGSGGHFVDLAKHTLNDA 551

Query: 784  WLSMELMFHLSVLPLTR-----------QLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
             L   LMF L +LPLT+           QLTNI+GNLW  T++G R+QR EY+LLH F  
Sbjct: 552  QLVQRLMFKLQLLPLTKISSFLSVLSPQQLTNIAGNLWNSTIKGNRSQRAEYILLHEFHK 611

Query: 833  KKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYA 892
              Y++P+K T       A QR               E+A             GK+G  YA
Sbjct: 612  MGYLLPEKLT-------ASQR--------------REEAGCSG---------GKKG--YA 639

Query: 893  GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS------PDGLVPHLPS-S 945
            G  V EP KGL++ ++L++D+ SL  ++IQEYN+CFTT++ +       +  +P LP+ S
Sbjct: 640  GAEVFEPSKGLHESFVLVMDYESLSAALIQEYNLCFTTMDWTDKNNGDQEHSLPTLPAES 699

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSR 1004
            +  GVLP++++ LV +RR +K  M++     K +QL+I+Q ALK+TA S+YGCLG+ + R
Sbjct: 700  QDRGVLPKVVEALVVQRRNLKELMRSEVDSDKKEQLNIRQLALKITACSVYGCLGYDSFR 759

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGID---DIAKAKAIA 1061
            FYA+P+A L+ Q GR+ L  T D+ +N + LEVIYGDTDSIMI++ I    D +K K + 
Sbjct: 760  FYAEPIAALLAQLGRQTLVRTKDIAENTMGLEVIYGDTDSIMINTRISRLIDYSKVKELG 819

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRR 1120
              V  EVNK YK LE+++D +++ ML+L+KKKYAA+ + +   G+     E KGLD+VRR
Sbjct: 820  DSVKSEVNKLYKKLELEVDAIFRSMLILEKKKYAALTISEGPGGLLKFGKELKGLDLVRR 879

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DW + S+E G + + QILS    + V ++IH+ L  + E MR G++++  YVITK L K 
Sbjct: 880  DWCIQSRESGKYVVDQILSSEERDVVFQNIHDHLELLSEKMRYGELSIGNYVITKGLNKH 939

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC--------CEQGTSSGSSVGI 1232
            P  Y    + PHVQVA R+ ++  + G   GD +PYII          +  T++  S  +
Sbjct: 940  PNEY--KSSLPHVQVARRMLKNHKAVGI--GDHIPYIITESNKIVEKSDNVTATKMSKNL 995

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQ 1292
            ++RA HPDE+++ + K   DID+Y + QI P + RLC  + G  PE L    GLD     
Sbjct: 996  SERAYHPDEVERSERKLRPDIDWYWNNQIIPPILRLCKPLGGVLPEILDKNPGLDSFNLY 1055

Query: 1293 SKPSETMSSDPSSSLLFAVGDE-----ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSV 1347
            +  S T++   + +++    ++     ER+   +   + C SC +  + P     +  + 
Sbjct: 1056 NSVSGTITK--TENIIKCAPEQHLSRMERFSDVDKFTVLCSSCKTESEFPGSFRLVTENS 1113

Query: 1348 SEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLMMCD 1406
                   ++ ++    + CP      EA   S    I N V++        YY GL  CD
Sbjct: 1114 GSDTIFCQSGFSCPNPM-CPSPDNWGEADLFSCACKILNLVRKVKQDAQRKYYDGLARCD 1172

Query: 1407 DETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
            +       C L  R +  +   T C     C+G L   + E+ L  QL Y   L D    
Sbjct: 1173 N-----PLCDLETRQVFSS---TQCCPRATCDGSLKAIHNESWLQTQLKYLDSLFDIAHA 1224

Query: 1467 IEKMEISAKIPLEKELNKI-----RPVVALAASTVQRIRERCAYGWV 1508
             ++M  S     E  +  I     +  +AL    +     +  Y WV
Sbjct: 1225 KKRMLSSCPSLTEGRIGDILSKDDKDALALMRGFLCHSLNKSGYNWV 1271


>gi|4808579|gb|AAD29860.1|AF093136_1 DNA polymerase alpha catalytic subunit [Toxoplasma gondii]
          Length = 1690

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 403/1232 (32%), Positives = 565/1232 (45%), Gaps = 299/1232 (24%)

Query: 318  SGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA--------------- 362
            +G    +++  V +DG+LPFY LDA E+      GTLYLFGKV                 
Sbjct: 420  AGDQGSDNQLPVCEDGTLPFYFLDAWEE-----AGTLYLFGKVWPAAAKREKEGAEGTIP 474

Query: 363  ----GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEK----------------DAE 402
                G    SCCVVV++M   ++       F+T E +++                  DA+
Sbjct: 475  QKYRGCPPQSCCVVVRDMMVPLF-------FRTREQVEITSSLAGLLEGESEENPXDDAD 527

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS----NYIVSPVKRRYAFGQAEIPAGE 458
             S       R++++      K      L  L          +  V R YAF   ++P G 
Sbjct: 528  ASEEREQELRRRVERRMEITKAFFKQDLPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGR 587

Query: 459  NYVL-KINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS-S 515
            N    K+  P   P L P DL+GE +  + G   S +EL LVKR++KGP WL I  FS  
Sbjct: 588  NQTFVKVFVPASAPTLNPEDLEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIENFSRP 647

Query: 516  CPAPQRVSWCKYEITVDSPKDIR--------------------------VSSSSKHVAEV 549
              A +  SWC++E+ + S KD+R                          VS S+K V +V
Sbjct: 648  ASAFEHSSWCQHEVYIHSHKDVRLWNAFNKATQARYPDGPLPPPPPLTVVSLSAKSV-QV 706

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P     A +L T    RQ    +  AS      A ID            +      VR  
Sbjct: 707  PSGPGAASHLDT---DRQ----LAMASFFVYRDANIDDQNAQPRLSPQNVFCGIRRVRTA 759

Query: 610  DGGI-------FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
             G          P+ F ++ T    K G  V     +E+ LL   +  L   D D+LVGH
Sbjct: 760  GGATARVNAEGLPLQFYEQCT----KQGFGVF---DAEKTLLLNFINRLAAADPDILVGH 812

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTI-------------FGS 709
            N+ G D ++L  R  V  +P  +W ++ RLKR +  K R                  FG+
Sbjct: 813  NVYGSDFELLGQRCAVHGLP--VWHRLSRLKRPKHVKPRAASASGGSAARREGLDGSFGA 870

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLL-REVSYSL---------------------TQLAK 747
                G      GRL+CDT++ + +LL   V+Y L                     T + +
Sbjct: 871  SGLWGGRLLTVGRLVCDTYMQAHELLGHRVNYDLVPLMQDLFLASPAQQPAGGAPTSVWE 930

Query: 748  TQLNKDRKEVGPH----DVLKMFQTLES--LMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++ KD + + P     ++L+ FQ  E   L+  ++    + ++++ L + L+ LPLTR+
Sbjct: 931  AKIQKDIRALKPFPQPPELLEFFQRREPQPLLVCLQMCVQETFMTVVLCWRLNCLPLTRE 990

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK-------------FTYVKETK 848
            LT I GNLW ++LQ  RA+R  +LLLH F  +K+I PDK                     
Sbjct: 991  LTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPDKDDPYARGPPVRRPHAGPGRGG 1050

Query: 849  MAKQRSNHGVEDRNVEELTN--------EDANFDNDTSHNDHRKG------KRGPAYAGG 894
              +  S  G  D +  E+           +   + + ++  HR+G      +   +YAGG
Sbjct: 1051 PRRGPSASGARDEDPWEVEGGGQEVGVAGEGRDEEEAANEGHREGEEKVGARAKASYAGG 1110

Query: 895  LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------------SPDGLV-- 939
            LVLEP+ GLYD ++LLLDFNSLYPSIIQEYN+CF+TV+R              PDG +  
Sbjct: 1111 LVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVKRPVRTRISRVQATNGPDGEIAD 1170

Query: 940  ----------PHLPS------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDI 982
                      PH         + T G+LP +L+ LVQRRR VK  MK  S  +K    +I
Sbjct: 1171 AFREPDDRNLPHAAEEDVQGIASTPGLLPRILRQLVQRRRAVKASMKGESNPVKRATQEI 1230

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q ALKLTANS+YGCLGF  SRFYAK +A  ITQQGR IL +  D V+  L LEV+YGDT
Sbjct: 1231 KQLALKLTANSIYGCLGFXRSRFYAKEIAAFITQQGRNILMAAKDKVERILRLEVVYGDT 1290

Query: 1043 DSIMIHSGIDD-------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
            DSIMI++G+ D        A A  +  +V  E+NK YK LEIDL+G+++R+LLLKKKKY 
Sbjct: 1291 DSIMINTGLHDDGGEGKTYAAAVRLGEQVKAEINKSYKKLEIDLEGVFRRLLLLKKKKYV 1350

Query: 1096 A------VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
                    K Q+K       +E+KGLD+VRRDW+ L+K VG+  L QI+   + +D   +
Sbjct: 1351 CCIVVDYAKRQYK-------LEQKGLDIVRRDWAKLTKVVGNQLL-QIIFRIAQKDAAXA 1402

Query: 1150 ---------------------------IHNSLM---KVQEDMRSGQVALEKYVITKTLTK 1179
                                       + NS     K   +  +G V LE +VITK LTK
Sbjct: 1403 PVSTPAVTLPRTRRRRATRRNMPSTPWLKNSTRNCEKSGSNCGAGGVPLEFFVITKALTK 1462

Query: 1180 PPEAYPDAKN----QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS--------- 1226
            PP+ Y          PHVQVALR++  G S     G+ +PY+IC E    +         
Sbjct: 1463 PPQMYARGAGGAIMHPHVQVALRMQSRGLSV--KPGNEIPYVICSEASVRAFLAAKSEAE 1520

Query: 1227 ----------------------------GSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
                                           +  A+RA HP E+  G+    ID +YY  
Sbjct: 1521 GGKGGEPGAGQEAGNREADTAEKAKEGRSGPLSPAERAFHPREV-AGNPLLKIDAEYYLE 1579

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
            QQ+ P + R+CA +EGTS  RLA+CLGLD SK
Sbjct: 1580 QQLLPPIQRMCAFVEGTSASRLAECLGLDGSK 1611



 Score = 40.4 bits (93), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 9/72 (12%)

Query: 25 ALERLKALRRGGRRSGDSVGYNIKLENP-IYDTVAEDEYDALVARRREEARGFIVDDDGL 83
          ALE+++  RRG  ++ +   Y +K EN  IY+TV E++Y  L   RR  A+ +I   DG 
Sbjct: 11 ALEKIRRQRRGEAKASEQ--YEVKDENAEIYETVTEEDYQRLKQTRR--AQEWI---DGE 63

Query: 84 GYGDEGQEEDWS 95
          GY D+G EE W+
Sbjct: 64 GYSDDG-EEWWA 74


>gi|403223257|dbj|BAM41388.1| DNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1528

 Score =  494 bits (1273), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 367/1097 (33%), Positives = 553/1097 (50%), Gaps = 198/1097 (18%)

Query: 294  DPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDG----SLPFYILDAHEQLSGA 349
            DP  S    ++EV G    L+E  SG   QE E +V+ D      L FY+LD  E   G 
Sbjct: 232  DP--SIAESFREVDG----LNEVASGELPQEGEQDVEFDEKTGEDLAFYLLDLCE---GP 282

Query: 350  NMGTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISP 408
            N G L+LFG++K  G    +C + VKNM R ++  P   L   +    +    E S    
Sbjct: 283  N-GHLHLFGRMKTTGVETETCMITVKNMMRNLFFKPRMDLAFNETGELINSTRETSSTDY 341

Query: 409  MAFRKKLQDVALGLKTEIANQLLNLNV--------SNYIVSPVKRRY------AFGQAEI 454
                KK         +E+  + L +N          NY +  +K +        +G    
Sbjct: 342  EGIIKK--------GSELYERYLMMNFFKEMETIRKNYGIKKIKYKLVKRSLLTYG---- 389

Query: 455  PAGENYVLKINYPFKDPPLPA-DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            P  E   +K+ YP++ P +      G  +  +   +++ +ELFL+KRK+KGP+WL I+ F
Sbjct: 390  PTNEELYIKVCYPYQSPQIEKRHYCGTYYEDIYNINATQIELFLLKRKIKGPNWLRINNF 449

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRV-SSSSKHVAEVPPVTVTAINLKTVFN--KRQDVN 570
                  Q  S+CK E+ +DS KD+++  +    +  VP + + ++++KT+FN   +Q++ 
Sbjct: 450  RKTNDAQ--SYCKIELEIDSYKDVQLWHTKDSEILPVPKLKILSVSIKTIFNVPTQQEI- 506

Query: 571  EIVSASVVCC--HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
                  ++CC  +K  ID     +E K+    S F  VRK  G  +P         R   
Sbjct: 507  -----FMICCIYNKYNIDD----NEIKENN--SQFIGVRKAQGCQWPSELKAFLEKRP-- 553

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM-WS 687
                       ER LL   M  L + D D++VGH+I+   +D+L+ R     +P  +  S
Sbjct: 554  ----YFRIFEQERGLLANFMFLLQQTDPDIIVGHDINNSTIDLLVKRCNTLNIPLRISLS 609

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-----SYSL 742
            ++   KRS  P L                    GRL CDT    R L+RE      +Y+L
Sbjct: 610  RLRLQKRSNQPYLH-------------------GRLFCDT----RLLIRESHPSRENYNL 646

Query: 743  TQLAKTQLN---------KDRKEVGPHDVLKMF----QTLESLMELIEYGETDAWLSMEL 789
                   LN           R     +++ K+F    + ++ L++L +     A  +++L
Sbjct: 647  ISCVSEFLNVKNISDINYYSRNSFNVNEIKKLFSQDVEAIKHLLKLTQCNLLSAIHTLQL 706

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +F L +LPLT++LT  +GN W ++LQ AR++R++YLL+H F   KYI+   F        
Sbjct: 707  LFKLQILPLTKELTTTAGNTWSRSLQCARSERIDYLLMHEFYHNKYILDHIF-------- 758

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                               E   + ++   +D  +GK+G +Y GGLV EP+ GLYD +IL
Sbjct: 759  -------------------EKNAYKDNYQDDDKNEGKKGNSYEGGLVFEPRSGLYDNFIL 799

Query: 910  LLDFNSLYPSIIQEYNICFTTV----ERSPDGLVPHLPSSK----------------TTG 949
            LLDFNSLYPSIIQEYNICFTT     E   +G    L  ++                  G
Sbjct: 800  LLDFNSLYPSIIQEYNICFTTTYVKTEYGNEGNQRELNENEGEDGGNSRESEVVILDEVG 859

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +LK LV+ R  +K  + T +  L+  QL  +Q ALKL ANS+YGC+G + SRF+ K
Sbjct: 860  ILPSVLKRLVELRIKIKKAIGTETNELRKSQLKTRQLALKLIANSIYGCIGSTYSRFHCK 919

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD------IAKAKAIAG 1062
             +A  ITQQGR +L+ST + V+N  NL VIYGDTDS+MI++ I D         A  IA 
Sbjct: 920  YIASYITQQGRNLLKSTKEKVENVFNLNVIYGDTDSLMINTNIRDDGNATNYNAANQIAV 979

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER--KGLDMVRR 1120
             ++  +NK +K LEI +DG++ R+LLLKKKKYA++KV         V  R  KGLD +RR
Sbjct: 980  NLVNFINKSHKKLEIGIDGVFNRLLLLKKKKYASLKVGNVVDYENNVFHREIKGLDFIRR 1039

Query: 1121 DWSLLSKEVGDFCLSQILSE---RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            DWSLL+KEVG+  L  IL+       + +V+ IH++L  + + +    + L KY+ITK L
Sbjct: 1040 DWSLLTKEVGNQLLKIILNSNYYNGVDGIVQEIHSTLQNINQQLNDQSIELTKYLITKQL 1099

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS----------- 1226
            TK P+ Y D +N PHV VALRL + G  T  +AG  V YI+C ++ + +           
Sbjct: 1100 TKNPKEYSDIQNLPHVSVALRLNEKGI-TNYTAGHEVSYIVCTKESSKAYHESTNKEKEE 1158

Query: 1227 --------------GSSV--GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
                          G+S    ++QRA + +E+K+ + +  +DI YY +QQ+ P + RLC+
Sbjct: 1159 EESKYGKESTKEKKGASRVDNLSQRAFNINEVKEHNLE--VDIHYYKTQQLLPPIIRLCS 1216

Query: 1271 SIEGTSPERLADCLGLD 1287
             IEGT  +RL+ CL ++
Sbjct: 1217 IIEGTDAQRLSKCLQVE 1233


>gi|50552854|ref|XP_503837.1| YALI0E11869p [Yarrowia lipolytica]
 gi|49649706|emb|CAG79430.1| YALI0E11869p [Yarrowia lipolytica CLIB122]
          Length = 1375

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 443/1495 (29%), Positives = 683/1495 (45%), Gaps = 233/1495 (15%)

Query: 58   AEDEYDALVARRREEAR-------GFIVDDDGLGYGDEGQEEDWSVAG--LPSSSDDESL 108
            AED YD L     ++ R        F+V D+G GY D G  E W   G    SS +D S 
Sbjct: 25   AEDVYDELDETEFKQHRKQELLQDDFVVGDNGEGYADTGAYE-WEDTGKRYGSSDEDGSP 83

Query: 109  DGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAM-----------MGKQRLSAMLTST 157
              +R+ K   + K  K        KP  + TAA+A+           +G     +     
Sbjct: 84   KSKRAKKNSDVIKNRKLNFKALASKPVKTETAASAVADDFMDDLIGVIGGSGPKSADKKK 143

Query: 158  AMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVT 217
             M +KS+  + KE E V   V  +++ D A  E    S  + I   V   ++        
Sbjct: 144  PMNRKSRSARAKEEEDVF--VDMDYSYDMASPEHVSSSPPAEIVHAVREEAIADGMDFAD 201

Query: 218  NSTNSVKENSDLINNFVQIQNCDVVEES--KELKWESDNSTELTKRDNFVEVKEKV---- 271
            +    + E  D+ N   Q ++ D  +E   +    ++  +  +  +   V VK+++    
Sbjct: 202  DMDIDMGE-PDIPNKVPQSESDDDEDEVVVRPKAGQAAAAVNMRGQKPVVAVKKEIVKTE 260

Query: 272  ---KDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE 328
               K+ V ED++E          E  P +++         G+   D  K  +   E   E
Sbjct: 261  PVKKELVKEDIEE---------PELVPDITSNIQLATSKAGSA--DTAKISVEPNEVTTE 309

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKV-----KAGSTHHSCCVVVKNMQRCVYAI 383
               DG   F+ ++           TLYLFGK      K      SC + V + QR ++ +
Sbjct: 310  ---DGKFKFFWME-----HAIVRDTLYLFGKTMVLTGKNKGQFVSCLIKVASTQRQMFVL 361

Query: 384  PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
            P      +D   +L+   E                A G++                  PV
Sbjct: 362  PKNECSTSDVHEELDGIME----------------ARGIRMR--------------AKPV 391

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDP-PLPADLKGENFCSLLGTHSSALELFLVKRKV 502
             ++Y F    +PA   Y+  +  P K+   +P+   G  F  + G + S  E F++  +V
Sbjct: 392  TKKYCFHLPGVPAEAEYLEVLYSPPKEKFDVPS--SGATFSHVFGANQSLFEQFVLSHQV 449

Query: 503  KGPSWLSISKFSSCPAPQ-RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
             GP W+ I +     A Q R+S    EIT  S   I V S+ +  A +PP+++ ++ ++T
Sbjct: 450  MGPCWMQIDEPDFASAGQGRISHTGIEITAKSSAKISVCSNQE--APMPPISMISLAVRT 507

Query: 562  VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR-KLDGGIFPMGFNK 620
            +        E  S SVV     ++   M      K G L H ++   +    + P+GF +
Sbjct: 508  M-------TEGKSQSVVAV-TLRMFQDMPHDTTSKLGELQHRSMTFFRYPSKVAPVGFKQ 559

Query: 621  EATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR 680
               + N+    + +   +SE  +L+ ++  + ++D D++ GH +    LDVLLHR +   
Sbjct: 560  ILQEHNAGTAVDKIIPCNSELDILSHMVRLIARVDPDLICGHRLEALHLDVLLHRLKELN 619

Query: 681  VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-- 738
            V    WS +GRL+R++ P +  G               + GRL+ D         R V  
Sbjct: 620  VKD--WSSMGRLRRTQWPHMNYG--------------VLDGRLILD---MDNSYGRSVVQ 660

Query: 739  ---SYSLTQLAKTQLNKDRKEV---GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFH 792
               S+ LT+++   L   R ++     H   KM  +   L+  + +   D  L   ++  
Sbjct: 661  GCQSFDLTEMSLNTLGIKRMDIELDAAHS--KMVSSARPLLSYLMHCIQDTGLVAGIVIQ 718

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
               +PL++QLTN++GN W KTL G R+ R E +LLH F  + YI+PDK            
Sbjct: 719  TQAIPLSKQLTNLAGNAWNKTLAGTRSGRNESILLHEFTRQGYIIPDK------------ 766

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA-YAGGLVLEPKKGLYDKYILLL 911
             +  G         TN                 KRG A + GGLVL+P KGLYD+++L++
Sbjct: 767  EAGRG---------TN-----------------KRGKAKFQGGLVLDPVKGLYDRHVLVM 800

Query: 912  DFNSLYPSIIQEYNICFTTVERS--PDGLV--PHLPS-SKTTGVLPELLKNLVQRRRMVK 966
            DFNSLYPSIIQEYNICF+TV+ +  PD  +  P  P  S   G+LP L++ LVQRRR VK
Sbjct: 801  DFNSLYPSIIQEYNICFSTVDWASIPDDQIEPPAQPEPSVEQGILPRLIRTLVQRRREVK 860

Query: 967  TWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
              +K   AS  + +Q D++Q ALKLTANSMYGCLGF  SRFYAKPLA L T  GR+ LR+
Sbjct: 861  RLIKDPKASAAQKKQWDVKQMALKLTANSMYGCLGFEGSRFYAKPLANLTTSIGRDTLRA 920

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T +L +   +L+V+YGDTDS+MI++  D    A  +     ++VN  YK LEID+DG++ 
Sbjct: 921  TKELAEAE-SLQVVYGDTDSVMINTNTDTYKDAIKVGNDFKKKVNGLYKQLEIDIDGVFA 979

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R+LL  KKKYAA ++  ++GM    IE KGLD+ RR+   +SK+   + L Q+L     E
Sbjct: 980  RLLLTNKKKYAA-RLATEEGMGK--IEVKGLDLRRRETCQISKDACTYVLEQVLGPDDQE 1036

Query: 1145 DVVESIHNSLMKVQEDMRSGQV-------ALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
              + ++H  L ++ E +RSG V        +E Y I K L K P+AY +   QP V VAL
Sbjct: 1037 TALNNVHEYLFELAEKLRSGPVKDESAPFPVEHYAILKQLGKDPKAY-NPPIQPFVAVAL 1095

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R  + G       GD + ++I     T+ GS    + +A+   ++K   GK   D +YY 
Sbjct: 1096 RRLERGEV--IREGDVMSFVI-----TTVGSDE--SAKAQTTMDVKLSRGKLQPDAEYYI 1146

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADCLGLDPSK-FQSKPSETMSSDPSSSLLFAVGDEER 1316
            S+Q++P + RL A + GT P RL + LG++  K  QS  S  +     S+    + D ER
Sbjct: 1147 SKQLYPQIERLLAHVTGTDPVRLGEVLGIEIKKAHQSHESRELLHPLEST----ISDAER 1202

Query: 1317 YRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
            ++    L L+C  C  +F    V  +             TE+     + CP C       
Sbjct: 1203 FKDAVKLELTC-ECGHSFAYEGVKQNT------------TEHG----IICPSCSTMFPLT 1245

Query: 1377 RISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN---LRLIGDAERGTVCPN 1433
            R+    +   ++R     +S YY+    C D  C   T  L     R +G   R   C  
Sbjct: 1246 RLC-AQLETSIRRH----ISKYYETWYTCSDSACGIRTAQLTNFGKRCMGSDGRFNTC-- 1298

Query: 1434 YPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPV 1488
                 G L  +Y + DLY+QL YF  L +  +  ++ +   K+ +    N+ R V
Sbjct: 1299 ---NRGTLDYEYNDQDLYRQLLYFDTLFNMDKAAQENDKDMKLAVLAGQNRERFV 1350


>gi|402594858|gb|EJW88784.1| DNA polymerase [Wuchereria bancrofti]
          Length = 1034

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 355/1056 (33%), Positives = 513/1056 (48%), Gaps = 159/1056 (15%)

Query: 335  LPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
            L FY LDA E      M GT+YLFG++  GS   SCCVVVKN+ R               
Sbjct: 73   LRFYWLDAFE--DPIKMPGTVYLFGRLINGSISESCCVVVKNIWR--------------- 115

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
               L  D E   +  M   +++Q +   +  ++               P ++++A+    
Sbjct: 116  -QHLVNDVETDEVDLMQVNEEVQKILRSMGVKVVK-----------CRPCEKKFAYNDGV 163

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            +P     VL++ Y F DP LP DL GE F  +  T ++A+E  L++  +KGPSW+ IS  
Sbjct: 164  VPQSAQ-VLEVQYSFNDPRLPMDLSGETFSHVFNTTANAMERLLIETGMKGPSWIEIS-- 220

Query: 514  SSCPAPQ-RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
              C     +V++ K+E TVD  + ++  S S      P + +  +N+ T+ N +++ +EI
Sbjct: 221  -GCDVSSIQVTYVKHEFTVDMER-MKSISISDSSDPPPNLNLLTVNIVTIINCKKE-SEI 277

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSN 632
            VS S +   K     P L   +     L  F ++ K     +P       T+        
Sbjct: 278  VSISCIFDRKCTTTNPTLNRNF-----LERFCILTKPTFSAYPFDLK---TNLKQLGMDT 329

Query: 633  VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL 692
            V+   ++ER +LN  + +L  LD D   GH+++     +L  R +  ++  + WS++ RL
Sbjct: 330  VVYETTNERHMLNHFLCKLQNLDPDAYAGHDLAT-QFTILSSRIE--KLGIAHWSRLSRL 386

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK 752
            KRS   +         S          AGRL+ D+ L + +LLR  SY L  L+   L  
Sbjct: 387  KRSVTARQ-------ASHMKTSQWELTAGRLVLDSRLSAMELLRMRSYDLYDLSSDLLGI 439

Query: 753  DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            +       D+   F     L+  I     DAWLS+ ++  L+ LPL  Q+T I G +  +
Sbjct: 440  NHHFAEKQDISAHFANSAQLIRFINNTWMDAWLSLVIIVELNALPLFIQITKIVGGVLSR 499

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
            T+ G RA+R EYLLLHAF    Y+ P+K  Y  ++K  KQ            EL +  + 
Sbjct: 500  TMLGGRAERNEYLLLHAFNKAGYVAPNK--YQPDSKKRKQ-----------SELKDTRSA 546

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
             ++   +N   + ++G  YAGGLVL+PK GLYD +ILLLDFNSLYPSIIQEYNICFTTV+
Sbjct: 547  DNHPEDYNKILQNRKG-QYAGGLVLDPKMGLYDTFILLLDFNSLYPSIIQEYNICFTTVD 605

Query: 933  RSPD--GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALK 988
             S      +P LPS    G+LP  +++LV+RRR VK  MK+   +  + QQ DI+Q  LK
Sbjct: 606  MSKKDKNEMPELPSDTNEGILPREIRSLVERRRDVKRMMKSEKLTEQQRQQYDIRQMGLK 665

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            LTANSMYGCLGF  SRFYAKPLA LIT QGREIL  T DLV+ N    VIYGDTDS+MI+
Sbjct: 666  LTANSMYGCLGFQQSRFYAKPLAALITAQGREILMHTKDLVEKN-GYSVIYGDTDSVMIN 724

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
            +G  +                                            + + + G+  +
Sbjct: 725  TGFSE--------------------------------------------RSELQHGL--D 738

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC--EDVVESIHNSLMKVQEDMRSGQV 1166
            ++ R        D+S + K++G+  L  ILS +S   ++++E IH+ L K++E++    +
Sbjct: 739  IVRR--------DYSFIVKQIGNEILDIILSVQSQNRDEIIEQIHSRLQKLKEEISQELL 790

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
                + I K LT+ P+ Y +   QPH  VA RL  +G       GDTV YIIC       
Sbjct: 791  ENSMFQIFKQLTRNPDEYTNINIQPHAVVAQRLNATG-KFKFHRGDTVGYIIC-----ED 844

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            GS     QRA H  E+++ + +  ID  YY  QQI PVVSRLC  IE  +   +A  LGL
Sbjct: 845  GSGKSATQRAYHLTEVQENNLR--IDFHYYLVQQILPVVSRLCVPIEECNEAWVAQALGL 902

Query: 1287 DPSKFQSKPSETMSSDPSSSLL-FAVGDEERYRGCEPLILSCPS--CSSTF--------D 1335
            D   ++       + D    LL F+    ER   CE     CP+  C   F        D
Sbjct: 903  DSMAYEKHGVYEENVDREEQLLCFSYHSLER---CESFKFVCPNDGCGHEFLVRECVVQD 959

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFW--RTLRCPKC 1369
               VC  I  +      +  T    W  + + CPKC
Sbjct: 960  ISYVCDDIGCAY-----RTRTLVLAWTRQGVPCPKC 990


>gi|2865236|gb|AAC38861.1| DNA polymerase alpha, partial [Uroleptus gallina]
          Length = 973

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 346/1039 (33%), Positives = 535/1039 (51%), Gaps = 139/1039 (13%)

Query: 76   FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
            FIVDDDG GY D G E  W V+    + ++ +   +R +  + ++    + N Q++   N
Sbjct: 1    FIVDDDGYGYRDFGGE-IWEVS---ETKEEGAKKKKRKLDVRTLQFNLCQPNEQHI--TN 54

Query: 136  PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADR--ERRR 193
              + A+     K +  +++T      K  +E+ KE   + + +L E    +AD   +   
Sbjct: 55   FMMPASTIQKKKNQTGSVVTQAKQKPKVTEEQSKE---IFNNLLQELDQKDADELEDINA 111

Query: 194  RSVSSNIKSFVSVNSV-----KTNSQLVTNST---------------NSVKENSDLINN- 232
            ++V + +   ++ N       K N  L T                   +V++N +  +  
Sbjct: 112  KNVMAELNKPIAFNKEDELVNKYNLTLDTKQVVEEKRIIEQQQQMQIGTVQQNVNPFSKK 171

Query: 233  --FVQIQNCDVVEES--KELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAK 288
              F +I N    E++  K+   +S N++    + N  + + +      +D +  +   A 
Sbjct: 172  RKFDEISNTTSAEKASVKKSVPQSSNTSYFDAKSNQSQFQSEDYQSAYDDSRMIEDQKAP 231

Query: 289  ISTE----KDPLLSATAGWKEVSGGNMVLDEGK-----SGLNCQESEFEVDDDGSLPFYI 339
            +S +    +D  +S    W ++   N   ++ K     + LN Q+     + DGSL FY 
Sbjct: 232  VSHQPMNHQDSNMSQNDEWAQLKQQNTGNNDFKQIDQNAALNAQDYPIPYNADGSLSFYW 291

Query: 340  LDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPNGPLFQTDEIMKL 397
            +DAHE+ +G++   LY+FGKV     +   SC + +  MQR V+A+P     QT +    
Sbjct: 292  IDAHEENNGSD---LYIFGKVFQPQINQYVSCALKINGMQREVFALPK----QTAKARGT 344

Query: 398  EKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAG 457
                EES++        ++DV L L+ +I  +  + N++ +   PV R+YAF +  I  G
Sbjct: 345  LTKEEESKL--------VRDVQLELE-DIRKKRYS-NIAKWRCKPVTRKYAF-EMPIQHG 393

Query: 458  ENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCP 517
            E+  LKI Y    PPLP++L G  F  + G + S LELF++KR++KGP W++I       
Sbjct: 394  EHLFLKIKYDATMPPLPSNLTGNTFECIFGANQSMLELFILKRRIKGPCWMTIKNAQKVT 453

Query: 518  APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASV 577
              ++ +WC+ EI VD+ K++ V+    +  EVPP+T    + KT      + NEI  A +
Sbjct: 454  DFKK-TWCRQEIFVDNFKNVEVTLDDLNKTEVPPLTSLCFSFKTT-RSSNNTNEI--AMI 509

Query: 578  VCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCE 637
             C   + ++   L     +P     FT++RKLDG   P+ F+ E   +  +         
Sbjct: 510  SCLVHSNVNQDGLT----QPDKFQTFTMLRKLDGK--PLPFDFEGKLKQKRENIQYF--- 560

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER ++   +  L+ +D D+L+ HN+ G   D+LL R Q  ++  S WS+IGR K++ +
Sbjct: 561  TNERQMIEAFISRLHLIDPDLLIAHNLCGGIFDLLLARIQFLKI--SHWSRIGRFKKANI 618

Query: 698  PKLR---KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            P  +    G    GS   P  ++C  GRLL DTFL +++L+RE +Y LT L K QL K+R
Sbjct: 619  PNKKFDTGGANYGGSQWIPRQVTC--GRLLVDTFLSAKELIRETNYDLTHLTKVQLKKER 676

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
             +     + + + T E L +L+E+ E D++ +  LM HLS++PLT+QLTNI+GNLW ++L
Sbjct: 677  TDFDEDLLPQFYVTSERLFQLVEHTEKDSYFTFMLMLHLSIIPLTKQLTNIAGNLWFRSL 736

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPD-KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            Q   A+R E LLLH F+ KK+I+PD K    KE K        GV     EE  N     
Sbjct: 737  QNVCAERNEMLLLHEFKKKKFILPDKKAASAKELK-------RGVMGEEFEEQDNN---- 785

Query: 874  DNDTSHNDHRKGKRGP-----AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
                       GK+GP      Y+GGLV++PK   YD  ILLLDFNSLYPSIIQ  N+CF
Sbjct: 786  -----------GKKGPKRKKAQYSGGLVIDPKARFYDNIILLLDFNSLYPSIIQVLNLCF 834

Query: 929  TTVERSP----DG------------------LVPHLPSSKTT---GVLPELLKNLVQRRR 963
            TTV R P    DG                      LP         VLP +L++LVQ+RR
Sbjct: 835  TTVSRRPTKNFDGSELKNAFKVQDDDNDDEEESVELPDKNVNLKDAVLPNVLRDLVQKRR 894

Query: 964  MVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
             VK  MK     +K+QQL+I+Q+A+KLTANSMYGCLGF +SRF+AK +A LIT+ GRE L
Sbjct: 895  AVKDKMKNEKDTVKLQQLEIRQKAIKLTANSMYGCLGFGSSRFHAKAIAALITRTGRETL 954

Query: 1023 RSTVDLVQNNLNLEVIYGD 1041
              T D+ +N L   V+YGD
Sbjct: 955  LRTKDIAENKLGFNVVYGD 973


>gi|453056078|pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
 gi|453056079|pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
            Dna/rna
 gi|453056080|pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
            Dna/rna
          Length = 910

 Score =  481 bits (1238), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 322/882 (36%), Positives = 502/882 (56%), Gaps = 78/882 (8%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 72   LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 130

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S    +  S C  E++VD P++I  +++     
Sbjct: 131  SNIFESFVIQNRIMGPCWLDIKGADFNSI---RNASHCAVEVSVDKPQNITPTTTKT--- 184

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             +P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 185  -MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 239

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +   
Sbjct: 240  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNV 295

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 296  YLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRL 347

Query: 724  LCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIE 777
            +CD    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++
Sbjct: 348  ICDI---ANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQ 404

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
               T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IV
Sbjct: 405  ENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIV 464

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK      ++  KQR N        EE  N DA  ++       +K K    Y GGLV 
Sbjct: 465  PDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQGGLVF 501

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPEL 954
            EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP L
Sbjct: 502  EPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRL 561

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 562  LANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 621

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L ++ +NL V+YGDTDS+MI +G D+ A A  I     + VN++Y+
Sbjct: 622  VTNKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYR 680

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V   
Sbjct: 681  LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIH 740

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P 
Sbjct: 741  VLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPA 800

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKW 1249
            VQVALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       
Sbjct: 801  VQVALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNL 858

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
            + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+
Sbjct: 859  IPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKY 900


>gi|453056085|pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
            Dna/rna And Dgtp
 gi|453056086|pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
            Dna/rna And Dgtp
          Length = 910

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 322/882 (36%), Positives = 502/882 (56%), Gaps = 78/882 (8%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 72   LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 130

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S  A    S C  E++VD P++I  +++     
Sbjct: 131  SNIFESFVIQNRIMGPCWLDIKGADFNSIAA---ASHCAVEVSVDKPQNITPTTTKT--- 184

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             +P +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 185  -MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 239

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A+L+     L   D DV++GH +   
Sbjct: 240  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNV 295

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 296  YLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRL 347

Query: 724  LCDTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIE 777
            +CD    + ++ + +     S+ L+++ +    K+ K +        +Q  + S+   ++
Sbjct: 348  ICDI---ANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQ 404

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
               T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IV
Sbjct: 405  ENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIV 464

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            PDK      ++  KQR N        EE  N DA  ++       +K K    Y GGLV 
Sbjct: 465  PDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQGGLVF 501

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPEL 954
            EP+KGL+  Y+L++DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GVLP L
Sbjct: 502  EPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRL 561

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L NLV RRR VK  MKT +   K  Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L
Sbjct: 562  LANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAML 621

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T  L ++ +NL V+YGDT+S+MI +G D+ A A  I     + VN++Y+
Sbjct: 622  VTNKGREILMNTRQLAES-MNLLVVYGDTNSVMIDTGCDNYADAIKIGLGFKRLVNERYR 680

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
             LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLDM RR++  LS++V   
Sbjct: 681  LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIH 740

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+ ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  KN P 
Sbjct: 741  VLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPA 800

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKW 1249
            VQVALR++++G      AG  + ++I  +    + +   ++ +A+RA   +E+       
Sbjct: 801  VQVALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNL 858

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
            + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+
Sbjct: 859  IPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKY 900


>gi|17944210|gb|AAL48000.1| GM13460p [Drosophila melanogaster]
          Length = 746

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 310/770 (40%), Positives = 440/770 (57%), Gaps = 67/770 (8%)

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            EV   D+L+M++  ES+ +LI     D    + LM  L+++PL  Q+TNI GN   +TLQ
Sbjct: 2    EVNADDLLEMYEKGESITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQ 61

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G R++R E+LLLHAF  K YIVPDK       K   +RS  G  D     L+  DA    
Sbjct: 62   GGRSERNEFLLLHAFYEKNYIVPDK-------KPVSKRSGAGDTDAT---LSGADATM-- 109

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
                    + K+  AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++  
Sbjct: 110  --------QTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPV 161

Query: 936  DG-LVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLT 990
            D   +P LP SKT  G+LP  LK LV+ R+ VK  M     +  L++ Q  I+Q ALKLT
Sbjct: 162  DADELPTLPDSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQM-QYHIRQMALKLT 220

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG 1050
            ANSMYGCLGF++SRF+A+ LA L+T +GREIL +T  LVQ  +N +V+YGDTDS+MI++ 
Sbjct: 221  ANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQ-KMNYDVVYGDTDSLMINTN 279

Query: 1051 IDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD--GMPYE 1108
            I D  +   I   + Q VNK YK LE+D+DG++  +LLLKKKKYAA+K+  KD  G    
Sbjct: 280  ITDYDQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAIKLS-KDSKGNLRR 338

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
              E KGLD+VRRDWS L+  VG   L ++LSE+  E+ ++++H  L K++  +  G V L
Sbjct: 339  EQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPL 398

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
              +VITK LT+ P+ Y ++ + PHVQVALR+ +   +     GD V Y+IC +     G+
Sbjct: 399  PLFVITKQLTRTPQEYANSASLPHVQVALRMNRER-NRRYKKGDMVDYVICLD-----GT 452

Query: 1229 SVGIAQRARHPDELKKG-DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
            +    QRA H DELK   D K  +D +YY   QIHPVV+R+   +EGT   R+A+CLG+D
Sbjct: 453  TNAAMQRAYHLDELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMD 512

Query: 1288 PSKFQSKPSETM--SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
            P+KF+     T   +++ S          + YR CEP    C +C          +   M
Sbjct: 513  PTKFRQNAQRTQRENTEQSEGESLLKTTLQLYRLCEPFRFQCVTCK---------TEQLM 563

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP-GMIANQVKRQADGFVSMYYKGLMM 1404
            + + +P    +     +  +C K   E +   I     + NQ++     +V  +YK  ++
Sbjct: 564  ASAYRPGPSNSHIAVLQ--QCAK--SECQTAPIQYLASVRNQLQLSMRQYVQRFYKNWLV 619

Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLDT 1463
            CD   C + T + +LR      + +  P   +C +G L+R+YTE DLY QL Y   + D 
Sbjct: 620  CDHPDCNFNTRTHSLR------KKSHRPLCQKCRSGSLLRQYTERDLYNQLCYLRFMFD- 672

Query: 1464 QRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
               + K  +  K  L  EL +      L   TV +  +  +Y  + L+ +
Sbjct: 673  ---LGKQTLQQKPTLTPELEQ---AYQLLYETVDQQLQSSSYVIISLSKL 716


>gi|345494591|ref|XP_001604814.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Nasonia
            vitripennis]
          Length = 1738

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 360/1149 (31%), Positives = 570/1149 (49%), Gaps = 154/1149 (13%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            F+ LDA+E  S  + G ++LFGK+     + + S CV VKN+ R +Y +P          
Sbjct: 656  FFWLDAYED-SYTDPGVVFLFGKILEPTANQYISSCVTVKNIPRRMYVLP---------- 704

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             + ++  E+S     AF K   ++   L+ +  N+        +    V + YAF + ++
Sbjct: 705  -RKDEAGEQS-----AFDKAYVELNEYLRQKCINE--------FKCKKVTKIYAFEKKDV 750

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
            P    Y L++ Y    P L +D  G    ++ GT+ +A+ELFL+++ +KGP W+ + K S
Sbjct: 751  PQNTAY-LEVRYSSVYPALDSDYSGPAIQAIFGTNVTAMELFLIEKNIKGPCWMDV-KIS 808

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
               +    SWCK+EI     +DI V++  +    + P+ V A++++   +++    +I S
Sbjct: 809  PFASSNLSSWCKFEINCTRMEDISVTNHQQTDPSITPIAVAALSIQVSLDEKLQKYDIAS 868

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF---------NKEATDR 625
              +                     +  HF + +     +F   +          K A  +
Sbjct: 869  IGI--------------------AIQEHFHLYKGSPQPLFNRSYCLVSQCSPWPKFAKRK 908

Query: 626  NSK-AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
             +K     V+ CES E  LL RL+  L  LD D+L+G++ + F+ D+L+ +  +  + ++
Sbjct: 909  FAKWKDFQVILCES-EINLLERLLQLLQSLDPDILIGYD-TNFEFDILVRK--IMSLGTT 964

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS-YSLT 743
             WS+IG+L+RS  PK  KGR              + GR +CD      D    V+ Y L 
Sbjct: 965  DWSRIGKLRRSVPPKF-KGRIYLNQ--------VLCGRPICDVQRSMSDFQFSVTNYDLA 1015

Query: 744  QLAKTQLNKDR---KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
             L  + L+KD     E+ P + L+ + +L ++  L++   T      E+   LS+L L  
Sbjct: 1016 SLYSSTLSKDAGAYTEIKPDECLQYYTSLYNMTLLVKSTMTKVSYIFEVSAELSILSLAV 1075

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            Q+T I GN   +TL     +R E+LLLHAF++K Y+ PDK                    
Sbjct: 1076 QITRIVGNTLSRTLSCGVGERNEFLLLHAFQSKNYLTPDK-------------------- 1115

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                    +++++D          GK+  +Y GG++LEPK G YD  +LLLDFNSLYPSI
Sbjct: 1116 ------RKDNSDYD----------GKKKSSYTGGMILEPKAGFYDTSVLLLDFNSLYPSI 1159

Query: 921  IQEYNICFTTVERSPDGLVPHL---PSSKTTGVLPELLKNLVQRRRMVKTWMKT---ASG 974
            IQE+NICFTT+  +    V  L    S    G+LP ++  LVQ R  +K  + +   +S 
Sbjct: 1160 IQEFNICFTTIPGAAHASVDELCRVESCAEQGILPTIISGLVQSRLQIKKMINSPNLSSD 1219

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
            L+ +Q + +Q ALKLTANSMYGCLG S SRFYAK LA L+  +GREI + T DL+Q++ N
Sbjct: 1220 LR-RQYNSRQLALKLTANSMYGCLGASYSRFYAKGLAALVAMRGREIFKKTQDLIQSH-N 1277

Query: 1035 LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKY 1094
             EVIYGDTDS MI+  + D  +  A+   + +EVNK +K ++ID+D ++K +LL+KKK+Y
Sbjct: 1278 YEVIYGDTDSFMINVKLTDYEQVMAVGRMLKKEVNKLFKKIKIDIDRVFKCLLLMKKKQY 1337

Query: 1095 AAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            A + +  Q  D + Y+  E KGL+++RRD   L+ + G   L ++L ++      ++I  
Sbjct: 1338 AGLIITRQSNDELEYKK-EIKGLEIIRRDCCALASDTGHKVLEELLKDQPSHIRSKNIFE 1396

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L     ++R G++ +    ITK L+K P+ YP+ KN PHV VA RL +   +    AGD
Sbjct: 1397 ILETTNRELREGKLPMSSLEITKKLSKDPDKYPN-KNHPHVIVAERLNKIN-ARKWKAGD 1454

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             V YIIC +  T         +RA H +E K  + +  ID  YY    I P++ ++C  I
Sbjct: 1455 VVSYIICKDNTTRKP-----LERAYHIEEFKTNE-QIKIDETYYLMYHIFPIIHKICDPI 1508

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSS 1332
            EG     +A  LG+       KP + +S    + +  ++ D  R + C PL   C  C +
Sbjct: 1509 EGIENVLIAQSLGIAD---LYKPKK-ISDHRDAKMPLSLHD-NRNKNCVPLQFKCRDCKT 1563

Query: 1333 TFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQAD 1392
                    + I  SV    S  +         +C   P +       P  I NQ++    
Sbjct: 1564 K-------NKIKTSVIHTKSGCQPSLATCTNSKCNTPPWKY------PHFIQNQLQLAIR 1610

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
              V+ YY G + C +  C  +T     R+I       +   Y   +GR  RKY+E DL+ 
Sbjct: 1611 ECVNKYYTGAIECSNPLCCNST-----RIIHLNSDDGLIKCYDCFDGRRYRKYSEIDLHN 1665

Query: 1453 QLTYFCHLL 1461
            QLT+F  + 
Sbjct: 1666 QLTFFVDIF 1674


>gi|2865238|gb|AAC38862.1| DNA polymerase alpha, partial [Urostyla grandis]
          Length = 927

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 293/739 (39%), Positives = 420/739 (56%), Gaps = 83/739 (11%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGT-LYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIPN 385
            V+ D  L   + DAHE+    NMG  ++LFGKV         SC + V  MQR VYA+P 
Sbjct: 245  VNKDKELSLLLFDAHEE----NMGLDVFLFGKVYQPELKQYVSCSLKVNGMQRIVYALP- 299

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL--NVSNYIVSPV 443
                      K+ K+   + ++    +++ Q++AL + +E+     N   ++S +     
Sbjct: 300  ----------KVSKNKSRAELT----KEEEQEMALKIFSELDGIRKNKFPSISQWKCKVA 345

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            KR+YAF +  I  GE+ +LKI Y    PPLPA+L G  F  L  T  S LEL L+K+K+K
Sbjct: 346  KRKYAF-EMPIHHGEHQLLKIKYDSTMPPLPANLTGSTFECLFNTQQSMLELLLLKQKIK 404

Query: 504  GPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV 562
            GP W+++        A  + SWCK+++ + SPKDI ++    +  E PP+T   + LKT 
Sbjct: 405  GPCWITLKNVQQITQASNKRSWCKHDLVISSPKDIVITVDDLN-KESPPLTALCLALKTC 463

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
                Q+ NEI   S++  +    D    A+  K+   +   T++R+L     P  F   A
Sbjct: 464  -RSAQNTNEISMISMLIHNNINQDG---ATNDKR---MQSITLIRRLIQAPLPKDFEGRA 516

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                 K  S++   ++ E+ALL   +  L+ +D D+L+ HN+ G  L++LL R Q  ++ 
Sbjct: 517  ---KQKKDSSIFTFQN-EKALLENFISRLHLIDPDMLIAHNLCGGILELLLARIQWLKL- 571

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL 742
             + WS++GRLKR ++P   K          P + SC  GRLL DTFL +++L+RE SY L
Sbjct: 572  -AHWSRLGRLKRQQIPT--KKFDSVSQQWVPRLASC--GRLLVDTFLSAKELIRETSYDL 626

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
              LA  QL K R++     +   + T E L++LIE+ E D++L+  LM HLSV+PLT+QL
Sbjct: 627  KHLADVQLKKVREDYDDDLINSFYVTSERLLKLIEHTERDSYLTFSLMQHLSVVPLTKQL 686

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            T+I+GNLW ++LQ ARA+R E LLLH F  KKY+ PDK  + K+ K  +   N  +    
Sbjct: 687  TSIAGNLWYRSLQNARAERNEMLLLHEFYGKKYLCPDKAPFSKDKKQFEDYENENL---- 742

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                 NE+AN          +K ++   Y+GGLV+EPK G YD  ILLLDFNSLYPSIIQ
Sbjct: 743  ---FGNEEAN----------KKKRKKAQYSGGLVIEPKAGFYDTIILLLDFNSLYPSIIQ 789

Query: 923  EYNICFTTVERSP-----------------DGLVPHLPSSKTT---GVLPELLKNLVQRR 962
            EYN+CFTTV R P                 D  V  LP    T    +LP +LKNLVQ+R
Sbjct: 790  EYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEV-ELPDKGNTYKDAILPNVLKNLVQKR 848

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            ++VK  +K  +  +K QQL+I+Q+A+KLTANSMYGCLGFS+SRF+AK +A LIT+ GRE 
Sbjct: 849  KIVKEQLKKETDPVKQQQLEIRQKAIKLTANSMYGCLGFSSSRFHAKAIAALITKTGRET 908

Query: 1022 LRSTVDLVQNNLNLEVIYG 1040
            L  T D+ +N L   V+YG
Sbjct: 909  LLKTKDIAENKLGFNVVYG 927


>gi|2865226|gb|AAC38856.1| DNA polymerase alpha, partial [Paraurostyla viridis]
          Length = 966

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 338/1041 (32%), Positives = 520/1041 (49%), Gaps = 149/1041 (14%)

Query: 76   FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
            FIVDDDG GY D G E  W V       D      +R +    +    ++ N Q +    
Sbjct: 1    FIVDDDGYGYRDHGGE-IWEVGD--EKEDGGKKKKKRKLDVLLLTLLNQQPNEQEITN-- 55

Query: 136  PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEADRERRRRS 195
              +   + +  +Q  S+ LT   + K+   E+ K+  + +   L   APDE + E    +
Sbjct: 56   -FMMPTSTLTREQGNSSGLT---LVKQVTAEQSKDIMNNLFNQLDSKAPDELE-EFNSAA 110

Query: 196  VSSNIKSFVSVN----------------SVKTNSQLVTNSTNSVKENSDLINNFV----- 234
            + +++   ++ N                + KT  Q      +SV +    +N F      
Sbjct: 111  ILADLNKPIAFNKEEQLMNKYNVTLGNSASKTQQQQQPIIISSVGQTHQNVNPFSKKRKL 170

Query: 235  -QIQNCDVVEESKELKWE------SDNSTELTKR-------DNFVEVKEKVKDEVNEDVK 280
             +I N    E+  +   E      S+N++    +       D+F    +  K   NE  +
Sbjct: 171  DEISNSATTEKQNQRPSENIPIVHSNNTSYFDAKSQLNQSSDDFQSAYDDSKMIENEQQE 230

Query: 281  ECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEG-----KSGLNCQESEFEVDDDGSL 335
            E  K+  + S ++D        W+++    M   E       + LN  +    ++ DG+L
Sbjct: 231  EPMKIEKQPSPQQD-------DWQKIKQQQMQNQEALKIDQNATLNQYDYPLPLNPDGTL 283

Query: 336  PFYILDAHEQLSGANMGTLYLFGKVKAGS--THHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
             F+  DAHE+ +G +   +Y+FGK+      ++ SC + V  MQR +YA+P     +   
Sbjct: 284  SFFWFDAHEENNGQD---IYIFGKIYQPEVKSYVSCALKVNGMQREMYALPK---IKNKA 337

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
               + K+ E+ ++  M    +L D+      +I         + +   PV R+YAF +  
Sbjct: 338  RSAMSKEEEDKQV--MNIFHELDDIRKKRFQQI---------TKWKCKPVMRKYAF-EMP 385

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
            I  GE+ +LK+ Y    P LPA L G +F  L G + S LEL ++KRK+KGP W+++   
Sbjct: 386  IQHGEHKLLKVKYDCTMPSLPAGLTGNSFECLFGANQSMLELLILKRKIKGPCWITLK-- 443

Query: 514  SSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQD 568
                +PQ+V+     WC+ EI  + PK + V+    +  E PP++    + KT    + +
Sbjct: 444  ----SPQKVTDFKKTWCRQEIFDNDPKQMEVTIDDLNRTENPPLSSFTFSFKTC-RSQHN 498

Query: 569  VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
             NEI   S +  +    D P         G    FT++RKLDG   P  F  +   +   
Sbjct: 499  TNEIAMISCIIHNSINQDGPTSL------GKFQTFTLLRKLDGKPMPHDFEYKLKSKRD- 551

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
                 L   ++ER +++  +  L  +D D+LV HN+ G   ++LL R Q  ++  + WS+
Sbjct: 552  -----LQFFTNERQMIDAFINRLTVVDPDLLVAHNLCGGMFELLLARIQYLKI--NHWSR 604

Query: 689  IGRLKRSEMP--KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            IGR+K+S +P  K  +G   +G   S  I   +     CDTFL +++L+RE +Y L+ LA
Sbjct: 605  IGRMKKSAIPNKKFDQGGPYYG--GSQWIPRQVHAVDFCDTFLTAKELIRETNYDLSHLA 662

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
            K QL + R++     + + + T + L +L E+ E DA+L+++LMFHLSV+PLT+QLTNI+
Sbjct: 663  KAQLKQTRQDFDEELLPQFYTTSDRLFQLSEHTEKDAYLTIQLMFHLSVIPLTKQLTNIA 722

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK    + T    +R   G ED  V++ 
Sbjct: 723  GNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK---KQLTNKELKRGLFGEEDEQVDDK 779

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                               ++   YAGGLV+EPK G YD  ILLLDFNSLYPSIIQEYN+
Sbjct: 780  KKGGK--------------RKKAQYAGGLVIEPKAGFYDNIILLLDFNSLYPSIIQEYNL 825

Query: 927  CFTTVERSP------------------------DGLVPHLPSSKTTGVLPELLKNLVQRR 962
            CFTTV R P                           +P   +     VLP +L++LVQ+R
Sbjct: 826  CFTTVNRRPTKNFNGTDIKNEFKSEEDEENEEEQVELPDKNTKTNDAVLPNVLRDLVQKR 885

Query: 963  RMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            R VK  MK+     K+QQL+I+Q+A+KLTANSMYGCLGF +SRF+AK +A LIT+ GRE 
Sbjct: 886  RAVKEKMKSEKDATKLQQLEIRQKAIKLTANSMYGCLGFQSSRFHAKAIAALITRTGRET 945

Query: 1022 LRSTVDLVQNNLNLEVIYGDT 1042
            L  T D+ +N L   V+YGDT
Sbjct: 946  LLKTKDIAENKLGFNVVYGDT 966


>gi|340055506|emb|CCC49825.1| DNA polymerase alpha catalytic subunit, fragment, partial
            [Trypanosoma vivax Y486]
          Length = 916

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 300/774 (38%), Positives = 447/774 (57%), Gaps = 101/774 (13%)

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            PP T+ +I L    +K   VNE+V AS+       +D         KP +   F  VR+L
Sbjct: 3    PPFTIASIQLHAQLDKSGLVNEVVCASIAVYRDFVVDG------GAKPHVSECFIGVRQL 56

Query: 610  DGGIFPMGFNKEATDRNSK-AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                 P+ F+ E+   + +  G       ++ER LL  L   L  LD+D+++GHNI G+ 
Sbjct: 57   SSEA-PLPFDLESYCLSKRLPGVQRF---TNERGLLTWLATTLGDLDADIILGHNIIGYT 112

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCD 726
            ++ LL+R Q   +P+  WS +GRL     P+L+      GS  +  I   +CI GRL+ D
Sbjct: 113  VETLLNRYQELNIPN--WSTVGRLDIKRHPRLQ------GSSINLAIEKEACI-GRLVVD 163

Query: 727  TFLCSRDLLREVSYSL----TQLAKTQLNKDRKEVGPHDVLKMFQTLES-------LMEL 775
            T+L SR+  +  +Y L     Q+    +  ++    P + +    T+ S       L++L
Sbjct: 164  TYLLSREYYKSTNYKLLSLSAQMGLQGIVDNQGSFEPGNTVLDKNTMTSSTDICQILLQL 223

Query: 776  IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
            +      A LS  L   L V+PLT++LT+++GNLW +TL GAR++R+EYLLLHAF   K+
Sbjct: 224  LNC----AVLSFNLAAFLDVIPLTKRLTSLAGNLWSRTLYGARSERIEYLLLHAFHNLKF 279

Query: 836  IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
            + PD+       K+  +R  H                        D  + KR   + GG+
Sbjct: 280  VTPDR------KKLDAKRGRH------------------------DEDETKRKTKFQGGM 309

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKT-------- 947
            VLEPK GLY +YILLLDFNSLYPS+IQE+NIC+TT+ER    +   +P  ++        
Sbjct: 310  VLEPKSGLYSEYILLLDFNSLYPSLIQEFNICYTTIERDESTVAAEVPPPESLICRACAA 369

Query: 948  TG---------VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
            TG         +LP++++ LV  RR +K  MKT      +  L+I+Q+ALKLTANSMYGC
Sbjct: 370  TGLPSPCSHKCILPKVIRGLVDSRREIKRLMKTEKDPANLALLEIRQKALKLTANSMYGC 429

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIA 1055
            LGF +SRFYA+PLAEL+T+QGR  L++TV+L+ Q + ++ VIYGDTDS+MI +GI D I 
Sbjct: 430  LGFEHSRFYAQPLAELVTRQGRLALQNTVELIPQVSPSIRVIYGDTDSVMIQTGIKDSIG 489

Query: 1056 KAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV--QFKDGMPYEVIERK 1113
            K + +  ++  +VN+KY+ LE+D+DG+++ MLLLKKKKYAA+ V     +G  Y+  E K
Sbjct: 490  KVRDLGFEIKGKVNQKYQSLELDIDGVFRAMLLLKKKKYAALSVVDWQGEGKMYQK-EVK 548

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV-ALEKYV 1172
            GLDMVRRDW  LS+ + D  L+++L+    EDV++ I   +    ED+RSG+V  LE +V
Sbjct: 549  GLDMVRRDWCPLSQRISDAVLNRVLNAEGGEDVLDFIMRYMKDRAEDVRSGKVYPLEDFV 608

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            I+K+LTK PE+Y      PH  VALR+KQ   +   S    +PY+I C+ G S+      
Sbjct: 609  ISKSLTKEPESY-RGSGFPHAVVALRMKQRKENMFVSV-TLIPYVI-CDGGESND----- 660

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
              +A H DE+++  G   +D+++Y S Q++P V RLC  I+G   E+L++ +G+
Sbjct: 661  -DKAYHVDEVRRTKG-LCVDVEWYLSSQLYPPVMRLCEHIQGFVAEQLSEAMGI 712


>gi|2865228|gb|AAC38857.1| DNA polymerase alpha, partial [Stylonychia lemnae]
          Length = 1017

 Score =  464 bits (1195), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 282/768 (36%), Positives = 424/768 (55%), Gaps = 100/768 (13%)

Query: 315  EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            E KS ++ QE +  ++ DG+L FY +DAHE+ +GA+   LY+FGK+         SC + 
Sbjct: 308  EQKSAMDIQEFDLPLNQDGTLSFYWIDAHEENNGAD---LYIFGKIYQPEIKQFVSCSMK 364

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKD---AEESRISPMAFRKKLQDVALGLKTEIANQ 429
            V  MQR +YA+P        ++ K+ +D    EES++        ++ V L L      +
Sbjct: 365  VNGMQRELYALP--------KMQKISRDLTKEEESQL--------VRSVQLELDDIRKRK 408

Query: 430  LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTH 489
                 ++ +    V R+YAF +  I  GE+  LKI Y     PLP+ + G  F  L G +
Sbjct: 409  KRFQGITKWRCKAVTRKYAF-EMPIQHGEHLFLKIKYDATMTPLPSTVYGNTFECLFGCN 467

Query: 490  SSALELFLVKRKVKGPSWLSISKFSSCPAPQRV-----SWCKYEITVDSPKDIRVSSSSK 544
             S LELF++KRK+KGP W++I        P++V     +WC+ EI +D+P+   V+    
Sbjct: 468  QSMLELFILKRKIKGPCWMTIKN------PKKVKDFKKTWCRQEIEIDNPQFAEVTLDDL 521

Query: 545  HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFT 604
            +  ++PP+T    + KT    + + NEI   S +  +    D P    +++       FT
Sbjct: 522  NRTDIPPLTSLTFHSKTT-RSQNNTNEIAMISCLVHNNINQDGPSTTDKFQT------FT 574

Query: 605  VVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
            ++RKL+G   PM F+ E   R  +         ++ER +++  +  ++++D D++V HN+
Sbjct: 575  LIRKLEGK--PMPFDFEQKLRQKRENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNL 629

Query: 665  SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP--KLRKGRTIFG-SGASPGIMSCIAG 721
             G   D+LL R Q  +   + WS+IGR K+  +P  K  +G + +G S   P  ++C  G
Sbjct: 630  CGGIFDLLLARIQFLK--DNHWSRIGRFKKGNIPTKKFDQGGSNYGGSQWIPRQVTC--G 685

Query: 722  RLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGET 781
            RLL DTFL +++L+RE SY LT L+K QL KDR++     + + +   E + +LIE+ E 
Sbjct: 686  RLLVDTFLSAKELVRETSYDLTYLSKVQLKKDRQDFDDDLLSQFYLASERIFQLIEHTEK 745

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            D++ +   M HLS++PL +QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK 
Sbjct: 746  DSYFTFMFMLHLSIIPLAKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK- 804

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                    + +    G  + N E+          DT        ++   YAGGLV+EPK 
Sbjct: 805  -----KPPSAKDFKRGFMEENEEQ----------DTKGGKKGGKRKKAKYAGGLVIEPKA 849

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------- 935
            G YD  +LLLDFNSLYPSIIQEYN+CFTTV R P                          
Sbjct: 850  GFYDNIVLLLDFNSLYPSIIQEYNLCFTTVNRRPTKKFDGSDLKNQFKVADNEDHQNDDE 909

Query: 936  --DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTAN 992
              D  +P    +    VLP +L++LVQ+RR VK  MK     +K+QQL+ +Q+A+KLTAN
Sbjct: 910  VEDVELPDKNVNTKDAVLPNVLRDLVQKRRAVKEKMKNEKDPVKLQQLENRQKAIKLTAN 969

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            SMYGCLGFS+S+F+A  +A LIT+ GRE L  T D+ +N L   V+YG
Sbjct: 970  SMYGCLGFSSSKFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYG 1017


>gi|156086442|ref|XP_001610630.1| DNA polymerase alpha subunit [Babesia bovis T2Bo]
 gi|154797883|gb|EDO07062.1| DNA polymerase alpha subunit, putative [Babesia bovis]
          Length = 1483

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 357/1053 (33%), Positives = 536/1053 (50%), Gaps = 147/1053 (13%)

Query: 290  STEKDPLL---SATAGWKEVSGGNM---VLDEGKSGLNCQESEFEVDDDGSLPFYILDAH 343
            S +K PL    S  A ++EV  G+M   V D  + G   +  +    D+  L FY+LD H
Sbjct: 255  SQDKVPLQLDNSIVADFEEVEVGDMEVIVTDSPREGSTPEFEKTISQDNNELAFYLLDLH 314

Query: 344  EQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
            E + GA    L LFGK++ + S+  SC + V+   RC++      L +   + +LE   E
Sbjct: 315  EDVGGA----LRLFGKIRRSNSSTDSCMITVQQFMRCLFFKARMDL-ELGHLPELESSYE 369

Query: 403  ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY-AFGQAEIPAGENYV 461
                   AF K+  +    ++     + +   +       VKR+   +G    P+ E   
Sbjct: 370  R------AFMKQFFNEFESIRKSYGIKKVKYKL-------VKRKLLTYG----PSEEALY 412

Query: 462  LKINYPFKDPPLPAD-LKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
            +K+ YP++ P L  +  +GE +  + G  S+  ELFLVKRK+KGPSWL I++  +  + +
Sbjct: 413  VKVCYPYQYPSLKQEHFEGETYSDVYGATSTPGELFLVKRKIKGPSWLRITE--ARMSKE 470

Query: 521  RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT--VTAINLKTVFNKRQDVNEIVSASVV 578
            R++ CK+E  +DS K++ + +  K+  E+P  T  V A+++KT F       E +  ++V
Sbjct: 471  RITTCKHEFEIDSHKNVELWNI-KNSEELPTPTLCVAAVSIKTFFASPTH-QETLQIAMV 528

Query: 579  CCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCES 638
                 K+DT    SE K     + +  +RKL+   +P+        R             
Sbjct: 529  YDRNFKLDT----SEIKSLNKCTQYIGIRKLNNQSWPLELQSFLKKRP------YFRIFE 578

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
             ER LL   M  L  +D D+++ H+I+    + LL R     +P        R+  S + 
Sbjct: 579  HERGLLANFMKTLEVIDPDIVMCHDIAQNFSEPLLKRCNALNIPL-------RVSFSRIR 631

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS-YSLTQLA---------KT 748
              RK    F            AGR+ CDT L +++L    S Y L+            K 
Sbjct: 632  ATRKYNHPF-----------FAGRIFCDTRLLTKELHHNRSNYDLSSCVADLVYATPMKE 680

Query: 749  QLNKDRKEVGPHDVLKMF--QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
                 ++     ++   F    ++ LM L++     A  +  L+  L  LPLT++LTNI+
Sbjct: 681  HALYTKQSFNLKELTNCFGETAMKELMVLVQANSKCAVDTFNLVIKLQALPLTKELTNIA 740

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            GNLW +++Q AR++R ++LLLH F   KYI+   F    +      + +   + +N    
Sbjct: 741  GNLWSRSVQCARSERNDFLLLHEFHRSKYIIDHHFERFHKQTSDADKDDSDSKKKN---- 796

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    Y GGLVLEP+ GLYD ++LLLDFNSLYPSIIQE+N+
Sbjct: 797  ------------------------YEGGLVLEPETGLYDNFVLLLDFNSLYPSIIQEFNV 832

Query: 927  CFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQ 985
            CFTTV+   DG V  L  ++TTG+LP++LK LV+ R  VK  +    +  +  QL ++Q 
Sbjct: 833  CFTTVKLLEDGSVQVL--TETTGMLPQILKRLVELRASVKAAIAVEKNDSRKAQLGVRQL 890

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ALKL ANS+YGCLG   SRF+A+ +A  ITQQGR +L+ST + V+N  +L VIYGDTDS+
Sbjct: 891  ALKLVANSLYGCLGSVYSRFHARHMAAYITQQGRLVLQSTRERVENQYSLHVIYGDTDSL 950

Query: 1046 MIHSGIDD------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            MI + I D         AK IA  ++  +NK +K LEI +D ++ R+LLLKKKKYAA+KV
Sbjct: 951  MIDTNIRDDGSETSYEAAKQIANTLMSSINKSHKKLEIGMDAMFNRLLLLKKKKYAALKV 1010

Query: 1100 -QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER-------SCEDVVESIH 1151
              +K  +    I  KGLD +RRDWS+L+KEVG+  L+ IL+++         E+ VE IH
Sbjct: 1011 VDYKSRIFAREI--KGLDFIRRDWSILTKEVGNALLAIILNDKVNDPEELGVENTVEKIH 1068

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
             +L  V   +  G +  + ++IT+ L K P+ Y    N PHV VALR+ +SG S   SAG
Sbjct: 1069 ETLRDVNNKIAEGNIPPKAWIITRQLAKNPQEYGQNNNLPHVTVALRMNESGAS--FSAG 1126

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDEL------------------KKGDGKWMIDI 1253
              VP+IIC ++          A+      EL                  +KG      DI
Sbjct: 1127 HEVPFIICSKESIEKLVLQDNAESNEKKTELDVKLRSLCNRAYSLTEFQQKG---LEPDI 1183

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
             YY +QQ+ P + RLC  IEGT P++LA CL +
Sbjct: 1184 QYYKTQQLLPPILRLCGVIEGTDPQKLASCLQI 1216


>gi|453055722|pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha,
            Selenomethionine Protein
          Length = 910

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 321/886 (36%), Positives = 487/886 (54%), Gaps = 86/886 (9%)

Query: 435  VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
            + N    P K +Y+F   +IP+  +Y LK+  P++ P      +P+DL  + F  + G +
Sbjct: 72   LDNIRAKPQKXKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 130

Query: 490  SSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA 547
            S+  E F+++ ++ GP WL I  + F+S    +  S C  E++VD P++I  +++     
Sbjct: 131  SNIFESFVIQNRIXGPCWLDIKGADFNSI---RNASHCAVEVSVDKPQNITPTTTKTXPN 187

Query: 548  EVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
                +   +++++T+ N +++  EIVS ++       +D+P+   E  KP  L   T+VR
Sbjct: 188  ----LRCLSLSIQTLXNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVR 239

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                  FP+G    A  +    G   L   ++E+A L+     L   D DV++GH +   
Sbjct: 240  PPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAXLSCFCAXLKVEDPDVIIGHRLQNV 295

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG----IMSCIAGRL 723
             LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL
Sbjct: 296  YLDVLAHRXHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNXNHFFISDICSGRL 347

Query: 724  LCDTFLCSRDLLREVSYSLT------QLAKTQLNKDRKEVGPHDV----LKMFQTLESLM 773
            +CD       +  E   SLT       L++       KE  P D+     +    + S  
Sbjct: 348  ICD-------IANEXGQSLTPKCQSWDLSEXYQVTCEKEHKPLDIDYQNPQYQNDVNSXT 400

Query: 774  ELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAK 833
              ++   T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F   
Sbjct: 401  XALQENITNCXISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRN 460

Query: 834  KYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAG 893
             +IVPDK      ++  KQR N        EE  N DA  ++       +K K    Y G
Sbjct: 461  GFIVPDKEG--NRSRAQKQRQN--------EE--NADAPVNS-------KKAK----YQG 497

Query: 894  GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGV 950
            GLV EP+KGL+  Y+L+ DFNSLYPSIIQE+NICFTTV+R+ + +  +P +P S+   GV
Sbjct: 498  GLVFEPEKGLHKNYVLVXDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGV 557

Query: 951  LPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            LP LL NLV RRR VK   KT +   K  Q DI+QQALKLTANS YGCLG+ NSRFYAKP
Sbjct: 558  LPRLLANLVDRRREVKKVXKTETDPHKRVQCDIRQQALKLTANSXYGCLGYVNSRFYAKP 617

Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            LA L+T +GREIL +T  L + + NL V+YGDTDS+ I +G D+ A A  I     + VN
Sbjct: 618  LAXLVTNKGREILXNTRQLAE-SXNLLVVYGDTDSVXIDTGCDNYADAIKIGLGFKRLVN 676

Query: 1070 KKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            ++Y+ LEID+D ++K++LL  KKKYAA+ V   K+G    V+E KGLD  RR++  LS++
Sbjct: 677  ERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDXKRREFCPLSRD 736

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V    L+ ILS++  E+ ++ +++ L  ++  + +  + ++KY I   L+K P+AYP  K
Sbjct: 737  VSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINXKLSKDPKAYPGGK 796

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKG 1245
            N P VQVALR +++G      AG  + ++I  +    + +   ++ +A+RA   +E+   
Sbjct: 797  NXPAVQVALRXRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVXIK 854

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
                + D  YY  +QI   V RL   I+  +  RL++ LGLD  K+
Sbjct: 855  SNNLIPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKY 900


>gi|2865234|gb|AAC38860.1| DNA polymerase alpha, partial [Holosticha sp.]
          Length = 966

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 285/738 (38%), Positives = 412/738 (55%), Gaps = 93/738 (12%)

Query: 321  NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQR 378
            N QE E  ++ DGSL FY +DAHE+ +G     L++FGKV  K  + + SC + +  ++R
Sbjct: 285  NTQEYELPLNADGSLSFYWIDAHEENNGTE---LFVFGKVFQKEINQYVSCSMKINGIER 341

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
             VYA+P           K++       ++     + ++ V L L  +I  + +   ++ +
Sbjct: 342  EVYALP-----------KMQNSKARGTLTKEEETQLIRGVQLELD-DIRKKRMP-QITKW 388

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
               PV R+YAF +  I  GE+  LKI Y    PP+P +L G  F  L GT+ S LELF++
Sbjct: 389  RCKPVTRKYAF-ELPIQHGEHQFLKIKYDAIMPPMPNNLTGNTFECLFGTNQSMLELFIL 447

Query: 499  KRKVKGPSWLSISKFSSCPAPQRV-----SWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            KRK+KGP W++I        PQ+V     +WC+ E  +++PKD  V+    +  ++PP+T
Sbjct: 448  KRKIKGPCWMTIKN------PQKVHEFKKTWCRQEFVINNPKDAEVTLDDLNRQDLPPLT 501

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
                + KT      + NEI   S +  +    + P     ++       F+++ KLDG  
Sbjct: 502  SLCFSFKTS-RSANNTNEIAMISCLIHNNINQEGPSQGERFQT------FSMMHKLDGKP 554

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P  F K+   R  K G        +ER ++   + +L+ +D D+LV HN+ G   D+LL
Sbjct: 555  MPHDFEKQLKMR--KDGIQYF---QNERQMIEAFISKLFLIDPDLLVAHNLCGGMFDLLL 609

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMP--KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
             R Q  +V  S WS+IGR K++ +P  K+  G +  GS   P  ++C  GRLL DTFL +
Sbjct: 610  ARIQFLKV--SHWSRIGRFKKNNIPTKKVDSGASYGGSQWIPRQVTC--GRLLVDTFLSA 665

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMF 791
            ++L+RE +Y LT LAK QL KDR +     + K +   E L +L+E+ E D++L+  LM 
Sbjct: 666  KELIRETNYDLTHLAKVQLKKDRADFDDEQLPKFYLASERLFQLVEHTEKDSYLTFMLML 725

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK       KM  
Sbjct: 726  HLSIIPLTKQLTNIAGNLWFRSLQNARAERNEILLLHEFKKKKFILPDK-------KMPN 778

Query: 852  QRS-NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             +    G+ D            F+           ++  AYAGGLV+EPK G YD  ILL
Sbjct: 779  PKDMRRGMADE-----------FEEPEVAGKKGGKRKKAAYAGGLVIEPKAGFYDNIILL 827

Query: 911  LDFNSLYPSIIQEYNICFTTVERSP----DGL--------------------VPHLPSSK 946
            LDFNSLYPSIIQEYN+CFTTV R P    DG                     +P    + 
Sbjct: 828  LDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSDIKNKFNVDSADGEDVEESPLPDKSVNL 887

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
               VLP +L++LVQ+R+ VK  MK     +K+QQL+I+Q+A+KLTANSMYGCLGFS+SRF
Sbjct: 888  KDAVLPNVLRDLVQKRKAVKDKMKNEKDAVKLQQLEIRQKAIKLTANSMYGCLGFSSSRF 947

Query: 1006 YA-KPLAELITQQGREIL 1022
            YA + +A LIT+ GR  L
Sbjct: 948  YAFRRIAALITRTGRSTL 965


>gi|298705331|emb|CBJ49021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1612

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/664 (42%), Positives = 376/664 (56%), Gaps = 72/664 (10%)

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE----------------- 932
            AYAGGLVLEPKKGLYD+YILLLDFNSLYPS+IQEYN+CFTT+                  
Sbjct: 957  AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDM 1016

Query: 933  -------RSPDGLVPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
                    S    +P LP+     GVLP +++ LV+RR +VK  +K      + Q+LDI+
Sbjct: 1017 DEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEKDPSRKQELDIR 1076

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALKLTANSMYGCLGFS SRFYAKP+A L+T QGRE L+ TVDL +N L LEVIYGDTD
Sbjct: 1077 QKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTD 1136

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRM-LLLKKKKYAAVKVQFK 1102
            S+MI++   D+ + K I  +V +EVNK YK LE+DLDG++K M LL KKK  A V V+  
Sbjct: 1137 SVMINTHSTDLKQVKDIGNQVKREVNKLYKSLELDLDGVFKSMLLLKKKKYAALVVVEHP 1196

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG      E KGLD+VRR+W  LSK+ G F L ++LS  + E VV  IH+ L  +   MR
Sbjct: 1197 DGSITYDKEMKGLDLVRREWCTLSKDTGKFVLDRVLSGEARETVVTGIHDHLEALAASMR 1256

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            +G+V + +YVITK L K P  YPDAK+QPHVQVAL + ++G S   + G  +PY++C  +
Sbjct: 1257 AGEVEVPRYVITKGLNKAPHEYPDAKSQPHVQVALAMMKAGKS--VNVGHHIPYVMCKIE 1314

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
            G +S      A+RARHPD++ +  GK  +D+++Y +QQI P VSRLC  IEGTS   LA+
Sbjct: 1315 GATS-----PAERARHPDDVLRSGGKLEVDVEWYLNQQIVPPVSRLCEPIEGTSMAVLAE 1369

Query: 1283 CLGLDPSKFQSKPSETMSSD-------PSSSLLFAVGDEERYRGCEPLILSCPSCSSTFD 1335
             +GLD SKF S  +     D       P+S L     D ER+RG EPL ++C +C    +
Sbjct: 1370 KMGLDASKFTSHANAAGGDDGDDWAFTPTSKL----PDAERFRGVEPLKMTCRACHEQAE 1425

Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK--CPEEVEAGRISPGMIANQVKR---Q 1390
               V S         P+      +    L CP   C             ++   +R    
Sbjct: 1426 FQGVFSWDRKKAVNGPA------DLRPGLMCPNSACGAYYWGAGSEAACVSTLYQRLTLA 1479

Query: 1391 ADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADL 1450
                + +YY+  + CDD +C   T S  +        G  CP    C GRLV++Y +  L
Sbjct: 1480 VRRHLKVYYQTHLRCDDSSCGLLTRSTGV-------MGVACPAK-GCQGRLVQEYPDKTL 1531

Query: 1451 YKQLTYFCHLLDTQRGIEKME-----ISAKIPLEKELNKIRPVVALAASTVQRIRERCAY 1505
            Y QL YF  L D  R   K+          +P+  E    R +++L    +Q   +   Y
Sbjct: 1532 YDQLKYFETLFDVDRAQTKVSELFNFKETDLPVSPEH---RQILSLVGRRIQDDVQSSGY 1588

Query: 1506 GWVK 1509
             W++
Sbjct: 1589 NWIR 1592



 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 219/478 (45%), Gaps = 95/478 (19%)

Query: 337 FYILDAHEQLSGANMGTLYLFGKVK-------------------AGSTHHSCCVVVKNMQ 377
            + LDA EQ      GT+YL GKV                    AG+T  S CV V +++
Sbjct: 456 MFWLDATEQ-----NGTIYLIGKVAVPSPSSGSASASPQGDSGAAGTTFLSACVAVHSIE 510

Query: 378 RCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRK----KLQDVALGLKTEIANQLL-- 431
           R V  +P            +EKD E S     A       K  D+   +  E+A+ L+  
Sbjct: 511 REVLVLPR----------LVEKDGEYSDGDEDAGGGGGSAKRADIG-AVYQEMASVLVPR 559

Query: 432 ----NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADL---KGENFCS 484
               N     +   PV R+YAFG   +P  E   LKI YP   P LP D+    G+ F +
Sbjct: 560 VIKRNAKGEQFRCKPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQA 619

Query: 485 LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDI------- 537
           + G  +  +E FL+KRK+ GP W+++       AP  VSWCK E+   SPK I       
Sbjct: 620 IFGARTPLIESFLIKRKLMGPCWITVRNPKVNNAP--VSWCKVEVAAQSPKSITRLLAEE 677

Query: 538 ---------------RVSSSSKHVAEV--------PPVTVTAINLKTVFNKRQDVNEIVS 574
                            SS+SK  A          PPV   ++++KTV + R   +E+V+
Sbjct: 678 VAAPAAAAATSGDAASPSSASKPTANTSAGKLPPPPPVVTMSLSMKTVVSPRTHTHEVVA 737

Query: 575 ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF---------NKEATDR 625
            S +   + ++D     S  KK G       + +  G  +P  F           EA  R
Sbjct: 738 LSALVHREVRLDGASDESG-KKMGAWLGIRPLGQSAGEEYPKVFPHDIKHQVKAAEANAR 796

Query: 626 NSKAGSNV-LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            +  GS V +    +ERALL+    +L + D DVLV HN+ GFD D+LL RA   ++  +
Sbjct: 797 RAGRGSGVPIQTMPNERALLSLFFQKLQQEDPDVLVAHNLMGFDFDILLSRAVHLKL--A 854

Query: 685 MWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
            WSKIGRL+R+  P++      + G+G S    +  AGRLLCDT+L +++ LRE +YS
Sbjct: 855 TWSKIGRLRRNTPPRVYSSSHGMKGAGGSYN-ANVAAGRLLCDTYLSAKEFLRETTYS 911



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 13 RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREE 72
          R R    +A + ALE L+A R G     +    +   ++ +YD V E+EY  LV R+R++
Sbjct: 12 RQRRVRPTAHSSALESLRAARDGLESRTEQ---HEDDDDEVYDEVTEEEYQELV-RKRQQ 67

Query: 73 ARGFIVDDDGLGYGDEGQE 91
          A  F+VDDDGLGY D+G+E
Sbjct: 68 ADDFVVDDDGLGYADDGEE 86


>gi|2865232|gb|AAC38859.1| DNA polymerase alpha [Halteria sp.]
          Length = 946

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 283/754 (37%), Positives = 409/754 (54%), Gaps = 91/754 (12%)

Query: 327  FEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQRCVYAIP 384
              ++ DG+L FY  DAHE+ +G +   LY+FGKV         SC + V  MQR +YA+P
Sbjct: 244  LHLNKDGTLSFYWFDAHEENNGQD---LYIFGKVWQPELKQFVSCSLKVNGMQREIYALP 300

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                 +      L K+ E+  +  M    +L+D+       I         + +   PV 
Sbjct: 301  K---LKGKARSALSKEEEDKLV--MNIFTELEDIRKRKYPAI---------TKWKCKPVT 346

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKG 504
            R+YAF +  I  GE+  LKI Y    P LP  L G  F  L G + S LELF++KRK+KG
Sbjct: 347  RKYAF-EMPIQHGEHKFLKIKYDATMPSLPYGLTGNTFECLFGANQSLLELFILKRKIKG 405

Query: 505  PSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFN 564
            P W++I       +  R +WC+ EI ++ PK   ++    + ++ P ++     +KT   
Sbjct: 406  PCWMTIRN-PVKESEARKTWCRQEIFINDPKQAEITLDDLNRSDNPALSSICFAVKTC-R 463

Query: 565  KRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD 624
              Q+ NEI   S    +    D P    +++       FT VRKLD    P  F +    
Sbjct: 464  SHQNTNEIAMISCFVHNNVSQDGPTQVEQFQT------FTYVRKLDAKPMPFDFERNIKT 517

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            R    G+ V+    SE+ L+   + ++ ++D D+L+ HN+ G   ++LL R    RV  +
Sbjct: 518  RK---GAPVIYF-PSEKQLIEAFINKVTQIDPDLLIAHNLCGGLFELLLARISYLRV--N 571

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGAS---PGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
             WS+IGRLK++ +P  +   +  G G S   P  ++C  GRLL DTFL +++L+RE +Y 
Sbjct: 572  HWSRIGRLKKTSIPTKKYDPSGAGYGGSQWIPRQVTC--GRLLVDTFLTAKELIRETNYD 629

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
            LT LAK QL + R +     + + + T E L +L ++ E DAWL+  LM HLS++PLT+Q
Sbjct: 630  LTHLAKVQLKETRDDFDEDLISQFYTTSERLFQLTDHTEKDAWLTFTLMCHLSIIPLTKQ 689

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            LTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PDK    + +    ++S  G ED 
Sbjct: 690  LTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDK---KQLSGRDMRKSMFGDEDD 746

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
             VE+   +                ++  AYAGGLV+EPK G YD  ILLLDFNSLYPSII
Sbjct: 747  VVEQGGKKGK--------------RKKAAYAGGLVIEPKAGFYDSIILLLDFNSLYPSII 792

Query: 922  QEYNICFTTVERSPDG----------------------------------LVPHLPSSKT 947
            QEYN+CFTTV R P                                     +P    +  
Sbjct: 793  QEYNLCFTTVNRRPTSNFNGTDIQNQFKIKAKKKEDDDQAEDEENEEEQVELPDKGVNTK 852

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
              VLP +L++LVQ+R+ VK  MK+    +K+QQL+I+Q+A+KLTANSMYGCLGFS+SRF+
Sbjct: 853  DAVLPNVLRDLVQKRKAVKDKMKSERDPVKLQQLEIRQKAIKLTANSMYGCLGFSSSRFH 912

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            AK +A LIT+ GR  L ST ++ +N L   V+YG
Sbjct: 913  AKAIAALITKTGRNTLLSTKEIAENKLGFNVVYG 946


>gi|343469847|emb|CCD17281.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 843

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 322/900 (35%), Positives = 484/900 (53%), Gaps = 119/900 (13%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER LL  L   +  LD D++VGHNI G+ ++ LL+R Q   +  + WS IGRL     P
Sbjct: 9    NERGLLTWLAETIGILDPDMIVGHNIIGYTVETLLNRYQELNI--ARWSTIGRLDIKRFP 66

Query: 699  KLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ----LNK 752
            +L+      GS  +  +   +C+ GRL+ DT+L +R+  +  +Y L  LA       +  
Sbjct: 67   RLQ------GSNFNLAVEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLAAQMDLKGITD 119

Query: 753  DRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
            ++    P   +       T   L  ++      A LS  +   L V+PLT++LT ++GNL
Sbjct: 120  NQWCFEPGSTVLSKSSMVTSTDLYPILLQLLNCAVLSFNVAVSLDVIPLTKRLTLLAGNL 179

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W +TL GAR++R+EYLLLHAF   K++VPDK    K  +M + R                
Sbjct: 180  WSRTLYGARSERIEYLLLHAFHNLKFVVPDK----KRQEMKRGR---------------- 219

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                      +D  + KR   Y GG+VLEPK GLY +YILLLDFNSLYPS+IQE+NIC+T
Sbjct: 220  ---------QDDEDETKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNICYT 270

Query: 930  TVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLVQRRRMVKTWMKTA 972
            T+ER  + +   +P        S KT G         +LP++++ LV  RR +K  MK+ 
Sbjct: 271  TIERDENTVNADVPPPESLACLSCKTAGLPSPCLHKCILPKVIRGLVDSRREIKRIMKSE 330

Query: 973  SGLK-IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV-Q 1030
                 +  L+I+Q+ALKLTANS+YGCLGF +SRFYA+PLAEL+T+QGR  L++TV+L+ Q
Sbjct: 331  KDPNSLAMLEIRQKALKLTANSVYGCLGFEHSRFYAQPLAELVTRQGRLALQNTVELIPQ 390

Query: 1031 NNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
             + ++ VIYGDTDS+MI +GI DDI K + +  ++  +VN++Y+ LE+D+DG+++ MLLL
Sbjct: 391  ISPSIRVIYGDTDSVMIQTGIKDDIGKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLL 450

Query: 1090 KKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            +KKKYAA+ V     +G  Y+  E KGLDMVRRDW  LS+ V D  L +IL+    ED++
Sbjct: 451  RKKKYAALSVVDWQAEGKIYKK-EVKGLDMVRRDWCPLSQHVSDSVLKRILNAEGGEDIL 509

Query: 1148 ESIHNSLMKVQEDMRSGQV-ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            + +   +  + +D+RSG+   LE +VI+K+LTK PE+Y      PH  VALR+KQ     
Sbjct: 510  DFVIRYMKDIAQDVRSGRTYPLEDFVISKSLTKEPESY-RGTGFPHAVVALRMKQR--KE 566

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD +PY+IC  +G+S      +  +A H DE+++ DG   +D+++Y S Q++P V 
Sbjct: 567  NVRVGDLIPYVIC--EGSSH-----VDDKAYHVDEVRRADG-LSVDVEWYLSTQLYPPVM 618

Query: 1267 RLCASIEGTSPERLADCLGLDPSKFQSK--PSETMSSDPSSSLLF-AVGDEERYRGCEPL 1323
            RLC  I+G  PE+L++ +G+  S    +    E  ++D S   +F +    E +    PL
Sbjct: 619  RLCEHIQGFVPEQLSEAMGIAASNKTGRNDDEEDAANDFSYCSIFKSRALSECFPTAVPL 678

Query: 1324 ILSCPSCSSTFDC-PAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM 1382
             + C  C       P    S   S   KP  P   +  +    CP C   +    ++  M
Sbjct: 679  QVRCSHCQQVVPVDPHKYISDMFSDRSKPF-PNKPFELY---VCPSCNRSLPLAYLANCM 734

Query: 1383 --IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN-LRLIGDAERGTVCPNYPRCNG 1439
              + +++ RQ       Y  G    D  + +        LR + D  +   CP       
Sbjct: 735  TQMCHKIIRQ------FYCSG---GDIASVRALRAQFTYLRAMFDVPQALNCP------- 778

Query: 1440 RLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRI 1499
            R VR   EA  Y  L      L T R +  +  + K P   ++  + P++  A S  +RI
Sbjct: 779  RAVR---EAHNYLAL----RCLGTDRKLYTLADAKKFP---DVEPVDPLLVCAESFYRRI 828


>gi|302409208|ref|XP_003002438.1| DNA polymerase alpha catalytic subunit [Verticillium albo-atrum
            VaMs.102]
 gi|261358471|gb|EEY20899.1| DNA polymerase alpha catalytic subunit [Verticillium albo-atrum
            VaMs.102]
          Length = 1231

 Score =  448 bits (1152), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 316/908 (34%), Positives = 464/908 (51%), Gaps = 142/908 (15%)

Query: 642  ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
            AL+ ++ I  YK  S   +   + G D  VLL+R    + P   WS++GRL+R+  P   
Sbjct: 416  ALMTKMKIGKYKTKS---LQPKLEGVDYSVLLNRIHEKKTP--QWSRLGRLRRTVWPS-S 469

Query: 702  KGRTIFGSGASPGIMSCIAGRLLCDTF--LCSRDLLREVSYSLTQLAKTQL--NKDRKEV 757
             G+T     A   +MS   GRLLCD         + +  S+SLT++    L  N  R+E+
Sbjct: 470  IGKTGGNVFAERQVMS---GRLLCDLANDAGKSAMYKCQSWSLTEMCSLYLSGNNHRREL 526

Query: 758  GPHDVLKMF--QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
                 LK +   + E  M+ + + E D +    L   + +LPLT+ LTN++GN W +TL 
Sbjct: 527  DNDAALKTWASHSKEGFMDYVTHIEADTYFIAALALQVQLLPLTKVLTNLAGNSWARTLT 586

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G RA+R EY+LLH F   KYI PDK  +        QR     ED             + 
Sbjct: 587  GTRAERNEYILLHEFHRNKYICPDKQGF--------QRGKGAKEDE------------EG 626

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
            D+   D         + GGLV +P+KGLYDK++L++DFNSLYPSIIQE+NICFTTV+R+ 
Sbjct: 627  DSKKKDK--------FKGGLVFDPEKGLYDKFVLVMDFNSLYPSIIQEFNICFTTVDRTA 678

Query: 936  D----GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKL 989
                   VP +P  +  G+LP+L+  LV RR+ VK+ MK  TA+  ++   DI+Q ALKL
Sbjct: 679  KLEDEEEVPEVPVDQEQGILPKLIATLVSRRKQVKSLMKDKTATPEQLATWDIKQLALKL 738

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            TANSMYGCLG++ SRFYA+PLA L T +GREILRST +L ++   L+VIYGDTDS+MI++
Sbjct: 739  TANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESRA-LQVIYGDTDSVMINA 797

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
             ++++A A  +  +  + VN++Y+ LEID+D +++R+LL  KKKYAA+ +   +G   E 
Sbjct: 798  NVENVADAFKVGAEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINLVENNGKYIEK 857

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            +E KGLDM RR++  LSKE+    L +ILS    E                         
Sbjct: 858  MEVKGLDMKRREYCGLSKEISGKLLDEILSGEDTE------------------------- 892

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
                   L K P+ Y +    P VQVALR    G       GD + YII     T  G S
Sbjct: 893  -------LGKGPKEYRNGDTMPQVQVALRDIARG--KNVRKGDVISYII-----TGDGQS 938

Query: 1230 VGIA-QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
               A +RA  P ++ K +     D+++Y ++QI P V RLCA+I GTS  +LA+CLGLD 
Sbjct: 939  SEPAPKRAYTPSDVLKPESGLAPDVEWYIAKQIFPPVERLCANIVGTSTMQLAECLGLDI 998

Query: 1289 SKFQSKP------SETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
             ++ +         + M   P  S    + D+ R+  C  L L C +C          SS
Sbjct: 999  KRYDTSRRRDDGVEKDMEVHPLES---QIPDDVRFADCTRLSLRCRTCKK--------SS 1047

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
            +   +  +P++          + C  C        ISP  +  QV+       + YY+G 
Sbjct: 1048 VFEGLYSQPTRVSPA-----GVLCDHC-----GATISPLSVVAQVEHAIRVQTARYYEGW 1097

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPR-----CNGRLVRKYTEADLYKQLTYF 1457
            ++CDD +C   T  +N+        GT C   P+     C GR+  +Y+E  +Y QL YF
Sbjct: 1098 LICDDSSCGIRTRQMNV-------YGTRCLG-PKGLARDCLGRMRYEYSEKAIYNQLVYF 1149

Query: 1458 CHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIR------------ERCAY 1505
              L D  +  +K   +A    E+ L++      LA +   R+R            ++C  
Sbjct: 1150 TSLWDVDKARDKAVAAAAPSSEEALSQADRENILALAEHNRVRFGTVKGVVEKYLDKCGR 1209

Query: 1506 GWVKLNDI 1513
             WV ++ +
Sbjct: 1210 QWVAMDTL 1217



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 11/114 (9%)

Query: 22  RAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDD 81
           R   L  LKALR+ G+++ D+  Y +   N +Y+ V E +Y  +V R R     F+VDD+
Sbjct: 6   RRAKLAELKALRQAGKKAFDN--YQVDDINELYEEVDETQYKKIV-RDRLNEDDFVVDDN 62

Query: 82  GLGYGDEGQEEDWSVAGLPSSSDDESLDGQ-------RSIKKQRIEKRGKKENN 128
           G GY D+G+EE W        + D   DG        ++ KK++ +   ++E N
Sbjct: 63  GEGYADDGREE-WDRVQQYHYASDSEEDGSGARGRPTKASKKKQADDAARREAN 115


>gi|452823842|gb|EME30849.1| DNA polymerase alpha subunit A [Galdieria sulphuraria]
          Length = 1356

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 358/1070 (33%), Positives = 544/1070 (50%), Gaps = 121/1070 (11%)

Query: 331  DDGSLPFYILDAHEQLSGANMGTLYLFGKV--------------KAGSTHHSCCVVVKNM 376
            ++  + F+  D  E +S A   +L+LFGK               K+     + C+ + N+
Sbjct: 265  ENDEIRFFWYDIEEAVS-AGGSSLFLFGKALFYESDDKLQQKDGKSRQILKNVCLHLPNL 323

Query: 377  QRCVYAIPNGPLFQTDEIMKLEKDAEE---SRISPMAFRKKLQDVALGLKTEIANQLLNL 433
             R +Y  P     Q D I   E DA E   S++ P     ++Q +   L           
Sbjct: 324  DRVLYFAPRWDTLQQDSIQN-ENDAVELIRSQVFP-----EVQQITTPL----------- 366

Query: 434  NVSNYIVSPVKRRYAF-GQAEIPAGENYVLKINYPFKDPPLPADLK---GENFCSLLGTH 489
             V  +   PV R + F     +P  + Y LK+ YPFK  P   +L    G+ F  + GT 
Sbjct: 367  -VPRFFAKPVTRIHPFLDDPRVPKYDAYYLKVKYPFKYAPPSKELAIQGGKTFNRIFGTT 425

Query: 490  SSALELFLVKRKVKGPSWLSISKFS-SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE 548
            ++A+E  L+K+K+KGP WL +   + S   P  +  C   + V++ ++I +   +    E
Sbjct: 426  TTAIERLLLKKKLKGPGWLRLKNATISSNMPCSLKCC---LQVENIENIVLEGKN----E 478

Query: 549  VP-----PVTVTAINLKTVF--NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS 601
            VP      +T + + L  VF  N+   ++EI++ +        I  P +  E+ +  +L 
Sbjct: 479  VPVEYSTALTFSILCLSFVFQWNEETSLHEIIAVT-------GIFYPFIPFEFFQSSVLH 531

Query: 602  H------FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
                   F+++R L    FP  F K      S++G   +   ++E  LL+  + +L   D
Sbjct: 532  STLQKYIFSIIRPLKNQSFPPEFEK----MTSRSGH--IETVANEAQLLHNFLEKLSSAD 585

Query: 656  SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE--------MPKLRKGRTIF 707
             D+++GH++  F LD+LLHR    + P+  WS +GRLKRS+            R+ RT  
Sbjct: 586  PDIILGHDLQSFQLDILLHRLAHLQTPN--WSIVGRLKRSKKLEDYLYSQKNSRQERT-- 641

Query: 708  GSGASPGIMSCIAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKDRKEVGPHDVLK-- 764
               +   + +  +GRL+ DT + S++LL RE +Y L+ LAK+    D K V   D  +  
Sbjct: 642  KRESYYYMKTLFSGRLIADTLIASKELLPRETNYGLSHLAKST-GVDTKLVSLPDARQTQ 700

Query: 765  -MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
              F + ++L EL++     A +S +L   L+ L L+ +L  ISG LW   L   RA+RVE
Sbjct: 701  TYFSSAQNLRELLDLNTCHAAVSFQLCCKLAALSLSLELAYISGYLWSNCLFFTRAERVE 760

Query: 824  YLLLHAFRA--KKYIVPDKFTYVK-ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
             LL HAF+    K I+PDK    K E      +S    E   V E   E           
Sbjct: 761  ILLAHAFKELFPKAILPDKLDRSKKELLQLVLKSEKAEEQETVTEKVVEG---------- 810

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPDG 937
              R  KR   Y GGLVLEPK+GLYD  IL LDFNSLYPSIIQEYN+CFTT    + S   
Sbjct: 811  --RTSKRKAKYEGGLVLEPKRGLYDSLILQLDFNSLYPSIIQEYNLCFTTTILYDSSFQN 868

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTW-MKTASGLKIQQLDIQQQALKLTANSMYG 996
            L   +  +K  GVLP +L+ LVQRRR VK    KT    + QQL+I+Q ALKLTANS+YG
Sbjct: 869  LEDVVIHTKKKGVLPLVLEKLVQRRREVKDLKQKTKDINRQQQLNIEQAALKLTANSVYG 928

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
            CLG  +SRF A+ LA L+TQ GR  L  T+ + +     EVIYGDTDS+ +++G+ ++  
Sbjct: 929  CLGAEHSRFGAQTLAALVTQFGRVTLDKTIKIAE-RCGFEVIYGDTDSMFLNTGVKEL-D 986

Query: 1057 AKAIAGKVIQ-EVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE-VIERKG 1114
            A    G+V++ EVN+ ++ LEID++ +Y RMLLL+KK YAA+++      P E ++E KG
Sbjct: 987  AVLEKGRVLKHEVNRNFRSLEIDVEAIYTRMLLLQKKHYAAMRLVDPVSRPGETILEVKG 1046

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSER-SCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            ++MVR DW   S+E+    +  +LS +   E+ V  + + L    E +R G V LEK+VI
Sbjct: 1047 VEMVRHDWCPASRELSLQVVELLLSSKFEREECVHKVISCLRFYIEQVRQGNVPLEKFVI 1106

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK+LT+ P  Y +  N PHV+VA RL   G+      G  +PY++C         +    
Sbjct: 1107 TKSLTQKPSDYSNDTNNPHVEVAKRLICKGFP--LRTGSYIPYVMCKRTENGYQRTSDTT 1164

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC-ASIEGTSPERLADCLGLDPSKFQ 1292
                HP EL +   K  ID ++Y   Q+ P V RLC  + +    ++L +  G+  +  +
Sbjct: 1165 PVPYHPSELDEAAVKLSIDTEWYIDTQLLPPVLRLCEPAFDEAEKDQLLEACGISTATRK 1224

Query: 1293 SKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
            S  + +  +      + A  +++ +    P ++ CPSCS   D   V S+
Sbjct: 1225 SSGTHSYENCHIFQKIDAAIEKQTFL---PWMICCPSCSCQVDFFEVTST 1271


>gi|449525228|ref|XP_004169620.1| PREDICTED: DNA polymerase alpha catalytic subunit-like, partial
           [Cucumis sativus]
          Length = 498

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/515 (51%), Positives = 336/515 (65%), Gaps = 63/515 (12%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           M DEQP  + RRRSRG+EA+AR  ALERLKA+R GGRRS ++ G+ +KLENPIYDT+ ED
Sbjct: 1   MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRS-EAGGFQVKLENPIYDTIPED 59

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGL-PSSSDDESLDGQRSIKKQRI 119
           EYDALVA+RREE RGFIVDDDGLGYGDEG+EEDWS AG+  S   D  LD  +  K  + 
Sbjct: 60  EYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSDESDGELDKPKKRKVVKK 119

Query: 120 EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKE--SESVIDE 177
           E + KK ++        SLTAAAAMMGKQ+LS+M TS+   K  +D+K K    +S++D+
Sbjct: 120 ETQPKKPSSS-------SLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLGCDSIVDD 172

Query: 178 VLAEFAPDEADRERRRRSVSSNI---KSFVSVNSVKTN------------SQLVTNSTNS 222
           V+AEFAPDE DRERRR+     I   ++  SV +VK+             S  + ++ N 
Sbjct: 173 VIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGESDFIKDAENG 232

Query: 223 VKE------NSDL--INNFVQIQNCDVVEESKELKWESDNS-----------TELTKRD- 262
             E      NSDL  +   V++Q      E+KE   +  NS             L K D 
Sbjct: 233 NSETTRVVTNSDLESVRGGVEVQGNG---ETKEFDSKDLNSQINLDPVEQLPNSLIKEDV 289

Query: 263 --NFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGL 320
             + + +K + K E     +    LNAKIS E+DP LSATA W+       V  EG   +
Sbjct: 290 SGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQ------AVRSEGSGSV 343

Query: 321 NC------QESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVK 374
           N       ++SEF+ D DGSLPFYI+DAHE+L GANMGT+YLFGKVKAG T HSCCVVVK
Sbjct: 344 NSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVK 403

Query: 375 NMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLN 434
           NMQRC+YAIP+     +DE+++L+KDAEES++SP   R KLQ+V  GLK E+A QLL+LN
Sbjct: 404 NMQRCIYAIPSASFLHSDEMLELQKDAEESQLSPADLRAKLQEVTAGLKNEMAKQLLDLN 463

Query: 435 VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
           VS + ++PVKR+YAF + +IPAGENYV+KINYPFK
Sbjct: 464 VSTFSMTPVKRKYAFERQDIPAGENYVIKINYPFK 498


>gi|71027153|ref|XP_763220.1| DNA polymerase alpha [Theileria parva strain Muguga]
 gi|68350173|gb|EAN30937.1| DNA polymerase alpha, putative [Theileria parva]
          Length = 1451

 Score =  441 bits (1135), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 380/1222 (31%), Positives = 586/1222 (47%), Gaps = 195/1222 (15%)

Query: 310  NMVLDEGKSGLN-CQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHH 367
            ++V+D G+S     Q     + +D  L FY+LD  E     + G L LFG+++ +G+   
Sbjct: 219  DVVIDSGQSPPQYTQPDALTLSED--LAFYLLDLCE-----DGGYLQLFGRIRTSGTDTE 271

Query: 368  SCCVVVKNMQRCVYAIPNGPLF--QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTE 425
            SC V VKNM R ++  P   L   +  E+++   D       P+  R     + +    E
Sbjct: 272  SCMVTVKNMYRSLFFKPRMDLLFNELGEVVETASDGVIKSSDPLYERH----LMMNFFNE 327

Query: 426  IANQLLNLNVSNYIVSPVKRRY-AFGQAEIPAGENYVLKINYPFKDPPL-PADLKGENFC 483
                  +  +       VKR    +G    P    + +K+ YPF+   L    L G+ + 
Sbjct: 328  FEVIRKDYGIKKIKYKLVKRSLLTYG----PTKPEFYIKVCYPFQFQILNKQHLSGKFYE 383

Query: 484  SLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRV-SSS 542
             +   HS+ +ELFL+KR++KGP+WL ++ +    +   +S+CK EI +DS K++++  S 
Sbjct: 384  DVYHNHSTQVELFLLKRRIKGPTWLRLTDYQK--STDSLSYCKVEIEIDSHKNVQLWHSK 441

Query: 543  SKHVAEVPPVTVTAINLKTVFNK--RQDVNEIVSASVVCC--HKAKIDTPMLASEWKKPG 598
            +      P + + +I++KT+F     Q+V       ++ C  +K  ID   +   ++   
Sbjct: 442  NNEELFTPKLNILSISIKTLFTTPTHQEV------FIISCVYNKYNIDETAMKDNYQ--- 492

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
                F  +RK     +P         RN             ER LL   M  L  +D DV
Sbjct: 493  ----FIGIRKPQNLQWPNELKHFLEKRN------YFRIFEQERGLLAYFMNYLRGIDPDV 542

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-LKRSEMPKLRKGRTIFGSGASPGIMS 717
            ++GH+I    +D+L+ R  +  +P  +     + +K+S  P L                 
Sbjct: 543  VIGHDIHQNCVDLLVKRCNLLNIPLRLSLSRLKLVKKSHSPIL----------------- 585

Query: 718  CIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELI 776
               GRL CDT L +++L   + +Y+L       L  + K VG  D+    ++  S+ E+ 
Sbjct: 586  --FGRLFCDTRLLTKELNPSKENYNLITCVNDIL--EIKNVG--DLNFYSRSAFSMTEIQ 639

Query: 777  E-YGETDAWLSM-ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKK 834
              +G+ D+   + +L +   +LPLT++LT I+GN W +++Q AR++R+++LL+H F   K
Sbjct: 640  NLFGKPDSIKHLLKLHYSFQILPLTKELTIIAGNTWSRSIQCARSERIDFLLMHEFYRNK 699

Query: 835  YIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGG 894
            YI+ + F   KE                 + +T     F    +H D  K     +Y GG
Sbjct: 700  YILDNVFNKFKE-----------------QSITTLGFYFYIHFTHLDDTK-----SYEGG 737

Query: 895  LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPEL 954
            LV EP  GLYD +ILLLDFNSLYPSIIQEYNICFTT   + +  V  L +    GVLP +
Sbjct: 738  LVFEPISGLYDNFILLLDFNSLYPSIIQEYNICFTTTVANGEESVVILDN---VGVLPSI 794

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            LK LV+ R  +K  +K      +  QL  +Q ALKL ANS+YGCLG + SRF+ K +A  
Sbjct: 795  LKRLVELRLNIKNIIKGEKNETRRVQLSTRQLALKLIANSIYGCLGSNFSRFHCKYIASY 854

Query: 1014 ITQQG-------------------REILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD- 1053
            IT+ G                   RE+LRST + V+N  NL+VIYGDTDS+MI++ I D 
Sbjct: 855  ITKLGTASRAGNYPIPHFTTYLHSRELLRSTKEKVENVFNLQVIYGDTDSLMINTNIRDD 914

Query: 1054 -----IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
                    A  +A  ++  +NK +K LEI +D ++ R+LLLKKKKYA++KV       +E
Sbjct: 915  GNLTNYNAANQLANNLVTFINKSHKKLEIGIDAVFTRLLLLKKKKYASLKVVDYGSGQFE 974

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSER---SCEDVVESIHNSLMKVQEDMRSGQ 1165
              E KGLD +RRDWSLL+KE+G+  L+ IL+       + +V+ IH++L+ + E + +  
Sbjct: 975  R-EIKGLDFIRRDWSLLTKEIGNKLLNIILNSNYYDGVDGIVQEIHSTLINLNEQLNNQS 1033

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC------ 1219
            + L K++ITK LTK P+ Y D +N PHV VALRL + G     S G  + YIIC      
Sbjct: 1034 IELSKFLITKQLTKNPKEYSDVQNLPHVSVALRLNEKGLG-NYSTGHEISYIICTKSSAT 1092

Query: 1220 -------------CEQGTSSGSSVG--IAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
                          E   +S  ++G  ++ RA   +E+ +   +  +DI YY  QQ+ P 
Sbjct: 1093 KFHTNTTSDKDNSAENNVNSSGNIGGSLSFRAFSYNEVMENGLE--VDISYYKQQQLLPP 1150

Query: 1265 VSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCE-PL 1323
            + RLC+ IEGT  +RL+ CL ++ S   +   E      S  L       E YR  E   
Sbjct: 1151 ILRLCSIIEGTDIQRLSRCLQIEKSI--AVTQEYNYEQESKVLSLIKRSHENYRDVEINS 1208

Query: 1324 ILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP-GM 1382
             LSC  C+                   P  P     F +  +C  C       R  P  +
Sbjct: 1209 QLSCQHCNG------------------PVLPSF---FLKYFKCNHCL------RWLPLHL 1241

Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRC--NGR 1440
            + N V R            + +C+   C  TT ++ L   GD +R   CP  P C  N  
Sbjct: 1242 LRNWVDRLLYELTVQSSFCIRVCN--ICNVTTLNVTL---GDVDR---CPQ-PTCQSNDS 1292

Query: 1441 LVRKYTEADLYKQLTYFCHLLD 1462
            +   +T   +Y    Y  ++L+
Sbjct: 1293 MQTIFTSNKVYMYYDYLVYMLE 1314


>gi|399216012|emb|CCF72700.1| unnamed protein product [Babesia microti strain RI]
          Length = 1466

 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 346/1032 (33%), Positives = 510/1032 (49%), Gaps = 148/1032 (14%)

Query: 305  EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV---- 360
            E+    + LD     +N + ++  + +D  +  Y LD  E   G      Y+FGK     
Sbjct: 257  EIDYPKVQLDTPDENINVKPTDIYLLEDKFIGIYCLDLQEDFKG----NFYIFGKAITSP 312

Query: 361  -KAGSTH-HSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM---AFRKKL 415
              A S    SCC++V    R +Y      +  T E  +   DA+ S    M    F K+L
Sbjct: 313  YTADSVDTASCCIIVTECMRDLYFKVRMDMKFTIENSETVIDAQNSLYQKMIMKGFYKEL 372

Query: 416  QDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQ--AEIPAGENYVLKINYPFKDPPL 473
            Q +                 S+Y +  V  +  + +     P G+   +K+ YP+  P +
Sbjct: 373  QTLK----------------SHYGIQKVMFKLVWRKILQNGPCGQQMFIKVCYPYSSPEI 416

Query: 474  -PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
             P    G ++  + G +SS +E F VKRK+KGP WL I    +      +S C++E    
Sbjct: 417  RPEHYSGIHYTDIYGLNSSLVERFAVKRKIKGPCWLKIR--DAKLVKDNISRCQFEFVTK 474

Query: 533  SPKDI---RVSSSSKHVAE--VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
            S K +           V E  +P + + +++LK +     ++ E    S++    AKI+ 
Sbjct: 475  SHKSVFRWNYKDQESKVPEPPLPKLCICSLSLKMI--SVNNIPEAFQISMIYNKAAKIEN 532

Query: 588  PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647
                      G  + F  VRK+    +P G +K    R        +C   +ER ++   
Sbjct: 533  FTF-----DLGNENQFVCVRKVANKNWPGGMDKFCKSRP------YICLTDNERGMIAVF 581

Query: 648  MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIF 707
              +L ++D D+LV H+I    +D L  RA    +P        R+  S     ++G+T  
Sbjct: 582  FGKLQQIDPDILVSHDIGNNIIDNLTKRAIATGLPQ-------RISFSRFKFYKRGQTY- 633

Query: 708  GSGASPGIMSCIAGRLLCDTFLCSRDLLREVS--YSLTQLAKTQLNKD--RKEVGPHDVL 763
                         GRL+CDT    R LL+E S   SL +  K + +++  R      D+ 
Sbjct: 634  -----------TQGRLVCDT----RVLLKEYSPGQSLVKFDKWKPDENFSRTTFSVEDIE 678

Query: 764  KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
              F  L  ++E I+     A+ S++ +  +  L LTR+LT I+GNLW  +L   R++R +
Sbjct: 679  PFFNNLSKMLEFIQSSSKFAYYSLDALVKMQALTLTRELTCIAGNLWSHSLACMRSERND 738

Query: 824  YLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
             LLLH F   KY++ + F   K+TK A  +                              
Sbjct: 739  MLLLHEFHRLKYVISNSFQKHKDTKSAATK------------------------------ 768

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP 943
            KG    +Y GGLVLEP  GLYD +ILLLDFNSLYPSIIQE+N+CFTT   SP  +V H  
Sbjct: 769  KG----SYEGGLVLEPILGLYDTFILLLDFNSLYPSIIQEFNVCFTTAVISP--IVDHNN 822

Query: 944  S------SKTTGVLPELLKNLVQRRRMVK-TWMKTASGLKIQQLDIQQQALKLTANSMYG 996
            +      S   GVLP +LK LV+ R  +K + M   +  K  QL ++Q ALKL ANS+YG
Sbjct: 823  NLQVETISTEPGVLPAVLKRLVEMRATIKSSMMSEKNSQKKAQLHVRQLALKLIANSLYG 882

Query: 997  CLGFSNSRFYAKPLAELITQQ-------GREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
            CLG   SRF+A+ LA  IT Q       GR IL  T + +++   L+VIYGDTDS+M+++
Sbjct: 883  CLGSPYSRFHAQHLAAFITLQGKSVGYSGRNILMDTKEKLESEFKLQVIYGDTDSLMLNT 942

Query: 1050 GI------DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
             I      +   KA  +A  +   +NKKY+ LEI+LD ++ R+LLLKKKKYAA+KV    
Sbjct: 943  NIRHDGRLESFNKANQLATILSGSINKKYRKLEIELDAIFARLLLLKKKKYAALKV-IDY 1001

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS----ERSCEDVVESIHNSLMKVQE 1159
            G     I+ KGLD VRRDWSLL+KE+GD  L+ + +    +   ++ +E IH  L  +  
Sbjct: 1002 GQKKLEIDSKGLDFVRRDWSLLTKEIGDKILNILFTANFGDNGIDEAIEKIHELLTYLCG 1061

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            +M S +V LE Y ITK L + PE Y DA   PHV VALR+ + G  T   AG  + +IIC
Sbjct: 1062 EMDSDRVPLESYTITKQLNRNPEEYSDASALPHVSVALRVNKQGKRT-IRAGQDISFIIC 1120

Query: 1220 CEQGT----SSGSSVG-IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             +Q        G ++  ++QRA   +E+K+   K   D++YY S Q+ P V RLC +IEG
Sbjct: 1121 SKQSIEKIKGKGDTINLLSQRAFTIEEVKELGLK--PDLEYYKSVQLLPPVIRLCGNIEG 1178

Query: 1275 TSPERLADCLGL 1286
            T+ +RL  CLGL
Sbjct: 1179 TNSQRLGRCLGL 1190


>gi|2865230|gb|AAC38858.1| DNA polymerase alpha, partial [Stylonychia mytilus]
          Length = 975

 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 96/732 (13%)

Query: 315  EGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVV 372
            E KS ++ QE    ++ DGSL FY +DAHE+ +GA+   L++FGK+     +   SC + 
Sbjct: 299  EQKSAMDIQEFALPLNQDGSLSFYWIDAHEENNGAD---LFIFGKIFQPEINQYVSCSMK 355

Query: 373  VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIAN--QL 430
            V  MQR +YA+P           K++K      ++    R++   +  G++ E+ +  + 
Sbjct: 356  VNGMQREIYALP-----------KMQKGKARGTLT----REEENQLVRGVQLELEDIRKK 400

Query: 431  LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHS 490
                ++ +   PV R+YAF +  I  GE+  LKI Y     PLP+ ++G  F  ++G + 
Sbjct: 401  RFQGITKWRCKPVTRKYAF-EMPIQHGEHLFLKIKYDATFVPLPSTVQGNTF-DVIGLNQ 458

Query: 491  SALELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSKH 545
            S LELF++KRK+KGP W++I        P++V+     WC+ EI +D+PK+  V+    +
Sbjct: 459  SMLELFILKRKLKGPCWMTIKN------PKKVTDFKKTWCRQEIEIDNPKNAEVTLDDLN 512

Query: 546  VAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTV 605
              ++PP+T      KT    + + NEI   S +  +    + P    +++       FT+
Sbjct: 513  KTDIPPLTSLTFAFKTA-RSQNNTNEIAMISCLVHNNVNQEGPSQTDKFQT------FTL 565

Query: 606  VRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
            +RKLDG   P  F+++   R  K         ++ER +++  +  ++++D D++V HN+ 
Sbjct: 566  IRKLDGKPMPFDFDQKL--RQKKENIQYF---TNERQMIDLFVTRIFQIDPDLIVAHNLC 620

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGR 722
            G   D+ L R Q+ ++  + WS+IGR K+  +P  +    G    GS   P  ++C  GR
Sbjct: 621  GGIFDLKLARIQMLKI--NHWSRIGRFKKGNIPTKKFDTGGANYGGSQWIPRQVTC--GR 676

Query: 723  LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETD 782
            LL DTFL +++L+RE +Y LT L K QL KDR++     + + +   E + +LIE+ E D
Sbjct: 677  LLVDTFLSAKELIRETNYDLTHLTKVQLKKDRQDFDDDLLPQFYLASERIFQLIEHTEKD 736

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            ++ +  LM HLS++PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD   
Sbjct: 737  SYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD--- 793

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT-SHNDHRKGKRGPAYAGGLVLEPKK 901
              K+   AK     G      EE         NDT         ++   YAGGLV+EPK 
Sbjct: 794  --KKPPNAKDLK-RGFMGDEFEE---------NDTKGGAKKGGKRKKAKYAGGLVIEPKA 841

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------------------------D 936
            G YD  ILLLDFNSLYPSIIQEYN+CFTTV R P                         D
Sbjct: 842  GFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVED 901

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMY 995
              +P    +    VLP +L++LVQ+R+ VK  MK+    +K+QQL+I+Q+A+KLTANSMY
Sbjct: 902  VDLPDKNVNIKDAVLPNVLRDLVQKRKAVKDKMKSEKDQVKLQQLEIRQKAIKLTANSMY 961

Query: 996  GCLGFSNSRFYA 1007
            GCLGFS+SRF+A
Sbjct: 962  GCLGFSSSRFHA 973


>gi|340504378|gb|EGR30826.1| hypothetical protein IMG5_122980 [Ichthyophthirius multifiliis]
          Length = 1254

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 316/1008 (31%), Positives = 499/1008 (49%), Gaps = 138/1008 (13%)

Query: 352  GTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM 409
            G +Y FGKVK    + +HSC + ++N+ R  Y +P+     +++I + E   E  +I   
Sbjct: 142  GKIYAFGKVKDPQLNKYHSCTIEIENIIRYYYLLPS-----SEQITEEEIKNEVHQIFKN 196

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
            A +       +  K +   Q             V++ YAF +  IP G     +I   ++
Sbjct: 197  AQK-------MSKKVDFVGQF------------VQKNYAF-ELPIPKGNQKWYQIMTSYE 236

Query: 470  DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEI 529
               L  D+KG+ F   +G+  S+LE FL+++++KGP W+ +    +   P  +S  K E 
Sbjct: 237  FESLDPDVKGKTFNYCIGSTYSSLESFLIQKRIKGPCWVKMRNIKN--TPNLISNRKLEF 294

Query: 530  TVDSP--KDIRVSSSSKHVAEVPPVTVTAINLKTVF------NKRQDVNEIVSASVVCCH 581
             +D     +I+V    K+    P  +V ++ LK+V       NK++   EI   ++    
Sbjct: 295  KIDYSINTNIQVLEGQKNS---PVFSVVSLGLKSVNRIDLKGNKKEYKKEIFILTMKFNQ 351

Query: 582  KAKIDTPML--ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESS 639
               ID  ++     ++K   + H    +K D       F K   D+ +     V C   S
Sbjct: 352  NVNIDNSIVKEMQNYQKIAFVCHPNNQKKQDSV-----FQKGVLDKQT-----VFC--QS 399

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SKIGRLKRSEMP 698
            E  LL   + +  +LD D++VGH++    LD++ +R +   +   ++ SK+  +  +E+P
Sbjct: 400  EMVLLENFLNKFNELDPDIVVGHDLYQTLLDIICNRIKERGLQKWVYLSKLINVGSNEIP 459

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            K       +G+ A       + GRL+ DT L  ++ L  V Y++  LAK   +K+   V 
Sbjct: 460  K-------YGN-AMQKCRQILKGRLIVDTLLSCQEFLNSVEYTIEHLAKKIFDKEITRVD 511

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              D  K F T   +  ++E    D   ++++M+HL ++ LT+QLT I GN W  +LQ  R
Sbjct: 512  QKDYEKKFATNFLVNSIVEDTYLDNEYALKIMYHLQIIQLTKQLTIICGNQWIGSLQNQR 571

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            A+R E LLLH F    Y+ PD F                 ++ N +           +T 
Sbjct: 572  AERNEMLLLHKFYELNYVYPDNF-----------------KNLNFQYKKKMQLKLSENTG 614

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL 938
                +  ++   + GG V EP+KGLY++YI+LLDFNSLYPSIIQE+N+CFTT  R    L
Sbjct: 615  SQQQQGKQKKQKFKGGQVFEPQKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTATRKSLSL 674

Query: 939  -----------------------------------------VPHLPSSKTTGVLPELLKN 957
                                                     +  +   K   VLP +L++
Sbjct: 675  EQQMQIFIKNKKDLNEQIIQNNQEEEEQYNDIQQDQQNDDQIAQIEKVKYIAVLPGILRD 734

Query: 958  LVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            LV +R+ VK  +K A   L+ + LDI+Q+A KL ANS+YGCLGFS+SRFYA P+A  IT 
Sbjct: 735  LVDQRKKVKNQLKNAKDQLEKETLDIKQKAFKLVANSIYGCLGFSSSRFYAMPIAAFITS 794

Query: 1017 QGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLE 1076
            +GRE+L S+  +V++ +   VIYGDTDS+MI     D+ +A  IA K+  E NK+YK L+
Sbjct: 795  KGREVLFSSKKIVED-MGYNVIYGDTDSLMIRPNTQDLCEAIKIALKIKIEANKQYKKLQ 853

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKV-------QFKDGMPYEVIERKGLDMVRRDWSLLSKEV 1129
            +D+DG++K MLL+KKKKYA +KV       Q K+     V E KG+D+VRRDWS +S++ 
Sbjct: 854  LDIDGVFKNMLLIKKKKYATLKVCNWEEAYQNKNIQEITVKELKGIDIVRRDWSQISRDA 913

Query: 1130 GDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN 1189
            G+  L  IL+ +S E V E+I   L ++ +++   ++    Y ITK LTK  + Y + KN
Sbjct: 914  GNKVLDIILNSKSSEQVQENIITYLTELNKEIDEKRIKPSDYYITKKLTKRIDQYGE-KN 972

Query: 1190 QPHVQVALRL-KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
             PHV+VA R+  + G       G  + YIIC  Q +       +  +A  P E       
Sbjct: 973  IPHVEVASRMITEKGLDPQSLVGHIINYIICKNQSSK------LIDKAFSPKEYNDQKDT 1026

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
              ID++YY   QI   + R    IE  +  ++A    +  +  Q+K +
Sbjct: 1027 LEIDLEYYKKYQIFEPIKRQLEVIENINISQVASIFAIKYTVVQTKEN 1074


>gi|242223777|ref|XP_002477462.1| predicted protein [Postia placenta Mad-698-R]
 gi|220722934|gb|EED77339.1| predicted protein [Postia placenta Mad-698-R]
          Length = 559

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/599 (41%), Positives = 350/599 (58%), Gaps = 66/599 (11%)

Query: 443  VKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKV 502
            VKR+YAFG+ ++P GE+   K+ Y F +P LP+++   N   + GT+++A EL ++KRK+
Sbjct: 7    VKRKYAFGEKDVPKGESQWFKVVYGFDEPQLPSNISSPNISRVFGTNTTAFELLVLKRKI 66

Query: 503  KGPSWLSISKFSSCPAPQR--VSWCKYEITVDSPKDIRVSSSSKHVAE--VPPVTVTAIN 558
             GP WL + +    P  +   VSWCK E TV +PKDI   + +   A    PP+TV +++
Sbjct: 67   MGPCWLQVKE----PKLEHKGVSWCKVEATVSNPKDINPFAETDQQAPRGTPPLTVVSLS 122

Query: 559  LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
            L+T+ N +++  EIV A+   C+   +D P        P M+  F  VR LD   FP  F
Sbjct: 123  LRTIVNHKENNREIVCATARICNAVDLDDPTPPEA--LPCMVRTF--VRPLDR--FPSNF 176

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
               A    +K G  V+  + +ER LLN L++ ++K D D +VGH + G  LDVLLHR + 
Sbjct: 177  EVRA----AKNGKGVISPQKNERMLLNNLLVTIHKADPDAIVGHEVLGVSLDVLLHRMRD 232

Query: 679  CRVPSSMWSKIGRLKRSEMPKL-RKGRTIFGSGASPGIMSCIAGRLLCDTFLCS-RDLLR 736
             +  +  WS+IGR +RS+ P + R+G            +  + GRLLCD    S + ++ 
Sbjct: 233  LK--ADHWSRIGRFRRSKWPNIGRQGTN----------LKFMNGRLLCDLASDSAKGMIS 280

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES----LMELIEYGETDAWLSMELMFH 792
              ++SLT++ KT L  DR+++ P D    F +  S    L+  + + E DA   M L   
Sbjct: 281  STTWSLTEMCKTHLKSDRQDIDPDDTASYFDSSVSSPDRLLTFVRHCELDAHYQMALAAK 340

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            + +LPLTRQLTN++GN W KTL G RA+R EY+LLH F   KYI PDK  + K+   A++
Sbjct: 341  VQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFHRLKYICPDKL-WGKKAATAEK 399

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
             ++                  D+D       K K+   Y GGLV EPK+GL+DKYIL++D
Sbjct: 400  EAH------------------DDDAEGGKVTKSKKD-KYKGGLVFEPKRGLWDKYILVMD 440

Query: 913  FNSLYPSIIQEYNICFTTVERSPDGL-------VPHLPSSKT-TGVLPELLKNLVQRRRM 964
            FNSLYPSIIQEYNI FTTV+R+ D +       +P  PS     GVLP L+  LV RRR 
Sbjct: 441  FNSLYPSIIQEYNIDFTTVDRAEDEVRADGEEAIPEPPSPGVGQGVLPRLIATLVNRRRQ 500

Query: 965  VKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            VK+ MK   A+  ++ Q DI+Q ALKLTANSMYGCLGF  SRFYA+PLA L T +GREI
Sbjct: 501  VKSLMKDRKATQAQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREI 559


>gi|2865224|gb|AAC38855.1| DNA polymerase alpha, partial [Pleurotricha lanceolata]
          Length = 990

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 263/717 (36%), Positives = 407/717 (56%), Gaps = 97/717 (13%)

Query: 319 GLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNM 376
           GL  ++ +  ++ DG+L FY +DAHE+ +GA+   LY+FGK+         SC + V  M
Sbjct: 329 GLKLKDYDLPLNQDGTLSFYWIDAHEENNGAD---LYIFGKIYQHEERQYVSCSIKVNGM 385

Query: 377 QRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS 436
           QR ++A+P              K   ++R +     +K Q  A+ ++ +   +    N++
Sbjct: 386 QRELFALP--------------KMKGKARGALTTEEQKEQSRAMIMELDDIRKKRFPNIT 431

Query: 437 NYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELF 496
            +    V R+YAF +  I  GE+  L+I Y    P LP+ ++G  F  + G + S LELF
Sbjct: 432 KWRCKQVNRKYAF-EMPIQHGEHQFLEIKYDATMPSLPSTVQGNTFECIFGCNQSILELF 490

Query: 497 LVKRKVKGPSWLSISKFSSCPAPQRV-----SWCKYEITVDSPKDIRVSSSSKHVAEVPP 551
           ++KRK+KGP W++I        P++V     +WC+ E+ V++PKDI V+    +  +VP 
Sbjct: 491 ILKRKIKGPCWMTIKN------PKKVIDYGKTWCRQEVIVNNPKDIEVTLDDLNRQDVPN 544

Query: 552 VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
           +T    ++KT    +Q+ +EI   S +       + P    + +       FT++RK++G
Sbjct: 545 LTSLTFSIKTS-RAQQNTHEIAMISCIVNRNVNQEGPTSIQQNQS------FTLLRKVEG 597

Query: 612 GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
            I P+ F+++   +      +V+     ER ++   + ++Y++D D++V HN+ G   D+
Sbjct: 598 KIIPLDFDQKLKQKKD----SVITYFMQERQMIEAFISKVYQIDPDLIVAHNLCGGIFDL 653

Query: 672 LLHRAQVCRVPSSMWSKIGRLKRSEMP--KLRKGRTIFG-SGASPGIMSCIAGRLLCDTF 728
           LL R Q  R+  + WS+IGRLK++++P  K+ +G + +G S   P  ++C  GRLL DTF
Sbjct: 654 LLARIQCLRI--NHWSRIGRLKKNQIPNKKVDQGGSNYGGSQWIPRQVTC--GRLLVDTF 709

Query: 729 LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSM 787
           L +++L+RE +Y LT LAK QL ++R++    D+L  F    E L +LIE+ E DA+L++
Sbjct: 710 LSAKELIRETNYDLTHLAKVQLKQERQDFD-DDLLPTFYLFSEKLFKLIEHTERDAYLTL 768

Query: 788 ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
           +LM HL ++PLT+QLTNI+GN+W ++L+ ARA+R E LLLH F+ KK+++PDK     + 
Sbjct: 769 QLMNHLQIIPLTKQLTNIAGNMWFRSLRNARAERNEMLLLHEFKKKKFLLPDK-----KQ 823

Query: 848 KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG-PAYAGGLVLEPKKGLYDK 906
             AK    +   D   EE+              D + GKR   AYAGGLV+EPK G YD 
Sbjct: 824 PTAKDLKRNPFADE-FEEM------------EKDQKGGKRKKAAYAGGLVIEPKAGFYDN 870

Query: 907 YILLLDFNSLYPSIIQEYNICFTTVERSP----DGL----------------------VP 940
            ILLLDFNSLYPSIIQEYN+CFTTV R P    DG                       +P
Sbjct: 871 IILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSELKSQFKKVNEQGEEEEVEEADLP 930

Query: 941 HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYG 996
               +    VLP +L++LVQ+RR VK  MKT    +K+ QL+I+Q+A+KLTANSMYG
Sbjct: 931 DKNVNTKDAVLPNVLRDLVQKRRAVKDKMKTEKDQVKLSQLEIRQKAIKLTANSMYG 987


>gi|85000361|ref|XP_954899.1| DNA polymerase alpha, catalytic subunit [Theileria annulata strain
            Ankara]
 gi|65303045|emb|CAI75423.1| DNA polymerase alpha, catalytic subunit, putative [Theileria
            annulata]
          Length = 1074

 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 325/999 (32%), Positives = 516/999 (51%), Gaps = 151/999 (15%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
            L FY+LD  E     + G L+LFG++++ G+   SC V VKNM R ++  P   L   +E
Sbjct: 155  LAFYLLDLCE-----DGGYLHLFGRMRSSGTETESCLVTVKNMYRTLFFKPRMNLL-FNE 208

Query: 394  IMKLEKDAEESRIS---PMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY-AF 449
            + +L   A E  I+   P+  R+    + +    E      +  +       VKR    +
Sbjct: 209  LGELVDSAAEGVINSSDPLYERQ----IMMNFFNEFEVVRKDYGIKKIKYKLVKRSLLTY 264

Query: 450  GQAEIPAGENYVLKINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
            G    P  + + +K+ YPF+  PL    L G+ +  +   +S+ +ELFL+KR++KGP+WL
Sbjct: 265  G----PTKQQFYIKVCYPFQFQPLNKQHLSGKYYEDVYHNNSTQVELFLLKRRIKGPTWL 320

Query: 509  SISKFSSCPAPQRVSWCKYEITVDSPKDIRV-SSSSKHVAEVPPVTVTAINLKTVFNK-- 565
             IS +    +   +S+CK E+ ++S K++++  + +      P + + +I++KT+FN   
Sbjct: 321  RISDYQK--SANSLSYCKVEVEIESHKNVQLWHTKNNEELFTPKLNILSISIKTLFNTPT 378

Query: 566  RQDVNEIVSASVVCC--HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
             Q+V       ++ C  +K  ID  ++    +       F  +RK     +P        
Sbjct: 379  HQEV------FIISCVYNKYNIDETVMKDNHQ-------FIGIRKPQNLQWPKELKHFLE 425

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
             RN             ER LL   M  L  +D D+++GH+I    +D+L+ R  +  +P 
Sbjct: 426  KRN------YFRIFEQERGLLAYFMNYLKGIDPDIVIGHDIHQNCVDLLVKRCNLLNIPL 479

Query: 684  SM-WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL-REVSYS 741
             +  S++  +K+S  P L                    GRL CDT L +++L   + +Y+
Sbjct: 480  RISLSRLKLVKKSNSPML-------------------FGRLFCDTRLLTKELHPSKENYN 520

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE--YGETDAWLSMELMFHLSVLPLT 799
            L       L  + K VG    L ++      M  IE  + + D+   +  + H ++L  +
Sbjct: 521  LITCVNDIL--EIKSVGD---LNLYSRSAFSMSEIENLFSKEDSIKHLLKLVHSNLLA-S 574

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            + +  +   L  +++   R++R+++LL+H F   KYI+ + F   KE           ++
Sbjct: 575  KHILQLLFKL--QSIMMCRSERIDFLLMHEFYRNKYILDNVFNKFKEQ----------LD 622

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D                             +Y GGLV EP  GLYD +ILLLDFNSLYPS
Sbjct: 623  DM---------------------------KSYEGGLVFEPISGLYDNFILLLDFNSLYPS 655

Query: 920  IIQEYNICFTT-VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
            IIQEYNICFTT V +  D +V         GVLP +LK LV+ R  +K  +K     ++ 
Sbjct: 656  IIQEYNICFTTTVAKDEDNVVIQ----DNVGVLPSILKRLVELRLNIKNIIKGEKNEVRR 711

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
             QL  +Q ALKL ANS+YGCLG + SRF+ K +A  IT+ GRE+LRST + V+N  NL+V
Sbjct: 712  VQLSTRQLALKLIANSIYGCLGSNFSRFHCKYIASYITKLGRELLRSTKEKVENVFNLQV 771

Query: 1038 IYGDTDSIMIHSGIDD------IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
            IYGDTDS+MI++ I D         A  +A  ++  +NK +K LEI +D ++ R+LLLKK
Sbjct: 772  IYGDTDSLMINTNIRDDGNLANYNAANQLANNLVTFINKSHKKLEIGIDAVFTRLLLLKK 831

Query: 1092 KKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE---RSCEDVV 1147
            KKYA++KV +++ G      E KGLD +RRDWSLL+KE+G+  L  IL+       + +V
Sbjct: 832  KKYASLKVIEYETGQFAR--EIKGLDFIRRDWSLLTKEIGNKLLDIILNSNYYNGVDGIV 889

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + IH++L+ + + + +  + L K++ITK LTK P+ Y D +N PHV VALRL + G++  
Sbjct: 890  QEIHSTLINLNDQLNNNSIELSKFLITKQLTKNPKEYSDVQNLPHVSVALRLNEKGHA-N 948

Query: 1208 CSAGDTVPYIICCEQG-----TSSGSSV-----------GIAQRARHPDELKKGDGKWMI 1251
             S G  + YIIC +       T+S +S             ++ RA   +E+ +   +  +
Sbjct: 949  YSTGHEISYIICTKSSASKFHTNSDNSAENTSSSGNTGSSLSSRAFSYNEVTENGLE--V 1006

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
            DI YY  QQ+ P + RLC+ IEGT  +RL+ CL ++ S+
Sbjct: 1007 DISYYKQQQLLPPILRLCSIIEGTDIQRLSRCLQIEQSR 1045


>gi|344251522|gb|EGW07626.1| hypothetical protein I79_016081 [Cricetulus griseus]
          Length = 1016

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/543 (45%), Positives = 335/543 (61%), Gaps = 58/543 (10%)

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
            L  +TL G R++R E+LLLHAF    YIVPDK  + K                  ++L +
Sbjct: 500  LVSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGD 543

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
            ED   D DT  N ++KG++  AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICF
Sbjct: 544  EDEEVDGDT--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICF 601

Query: 929  TTVER------------SPDGLVPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--S 973
            TTV+R                 +P LP      G+LP  ++ LV+RR+ VK  MK    +
Sbjct: 602  TTVQRVALEVQNSTTEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLN 661

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
               + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GRE            +
Sbjct: 662  PDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGRE------------M 709

Query: 1034 NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKK 1093
            NLEVIYGDTDSIMI++   ++ +   +  KV  EVNK YK LEID+DG++K +LLLKKKK
Sbjct: 710  NLEVIYGDTDSIMINTNSTNLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKK 769

Query: 1094 YAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            YAA+ V+   DG      E KGLD+VRRDW  L+K+ G+F + QILS++S + +VE+I  
Sbjct: 770  YAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQK 829

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             L+++ E++ +G + + ++ I K LTK P+ YPD K+ PHV VAL +   G      AGD
Sbjct: 830  RLIEIGENVLNGSIPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGD 888

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            TV Y+IC       GS++   QRA  P++L+K D    ID  YY +QQIHPVV+R+C  I
Sbjct: 889  TVSYVIC-----QDGSNLTATQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPI 942

Query: 1273 EGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPS 1329
            +G     +A  LGLD ++F+    +    + + +LL     + DEE+Y+ CE     CP+
Sbjct: 943  DGIDAVLIALWLGLDSTQFRV--HQYHKDEETDALLGGPAQLTDEEKYKDCEKFKCPCPT 1000

Query: 1330 CSS 1332
            C +
Sbjct: 1001 CGT 1003



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 176/410 (42%), Gaps = 54/410 (13%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           + D    VA R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 62  VSDSGSFVASRARREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDLTSVYEEVDEE 116

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           +Y  LV  R+++    IVDDDG GY ++G+E    +       D     G+ S  K   +
Sbjct: 117 QYSKLVQARQDDDW--IVDDDGTGYVEDGRE----IFDDDLEDDALDTSGKGSDGKAHRK 170

Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            R K     +V KPN       A  GK+      T+      SKD+ + +    ++  ++
Sbjct: 171 DR-KDVKKPSVTKPNNIKAMFIASAGKK------TADKAVDLSKDDLLGDILQDLNTDVS 223

Query: 181 EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLIN 231
           + AP      +++RS  + +  F SV+S K        S    KE          ++   
Sbjct: 224 QIAPPPVLIPKKKRSSGTLLNPF-SVHSPKAIPPGKPASPVLRKEPLLTPIPIKRAEFAG 282

Query: 232 NFVQIQNCDVVEESKELKWESDNSTELTKRDNF--VEVKEKVKDEVNEDVKECKKLNAKI 289
              Q +  +  +ES  +++E  +  E  + +      V  +  D+ +E          ++
Sbjct: 283 ELSQPECPEDEQESGIMEFEDGDFDEPMEAEEVDGEPVTARTWDQESEP-------EERV 335

Query: 290 STEKDPLLSATAGWK----EVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLP 336
             E DP    T+  +    +VS  +M   E +S    QE + +          DD+    
Sbjct: 336 KHETDPKKGTTSFLESFLPDVSCWDMD-QEDESSFLVQEVQVDSTHLPLVKGADDEQVFQ 394

Query: 337 FYILDAHEQLSGANMGTLYLFGK--VKAGSTHHSCCVVVKNMQRCVYAIP 384
           FY LDA+E       G ++LFGK  V++  TH SCCV+VKN++R +Y +P
Sbjct: 395 FYWLDAYEDPYN-QPGVVFLFGKVWVESAQTHVSCCVMVKNIERTLYFLP 443


>gi|195569123|ref|XP_002102561.1| GD19968 [Drosophila simulans]
 gi|194198488|gb|EDX12064.1| GD19968 [Drosophila simulans]
          Length = 847

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 266/647 (41%), Positives = 374/647 (57%), Gaps = 55/647 (8%)

Query: 831  RAKKYIVPDKFTYVK---ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
            +A+K I P K +      +   AK+  N  + +  V+E   E A            + K+
Sbjct: 167  KAEKVIAPAKISVTSRKFDAAAAKEYMNSFLNNIKVQE--QEHATM----------QTKK 214

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSK 946
              AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++  D   +P LP SK
Sbjct: 215  KAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSK 274

Query: 947  TT-GVLPELLKNLVQRRRMVKTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSN 1002
            T  G+LP  LK LV+ R+ VK  M  A  L  +   Q  I+Q ALKLTANSMYGCLGF++
Sbjct: 275  TEPGILPLQLKRLVESRKEVKKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAH 333

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            SRF+A+ LA L+T +GREIL +T  LVQ  LN +V+YGDTDS+MI++ I D  +   I  
Sbjct: 334  SRFFAQHLAALVTHKGREILTNTQQLVQK-LNYDVVYGDTDSLMINTNITDYDQVYKIGH 392

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRR 1120
             + Q VNK YK LE+D+DG++  +LLLKKKKYAAVK+  KD  G      E KGLD+VRR
Sbjct: 393  NIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAVKLS-KDSKGNLRREQEHKGLDIVRR 451

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            DWS L+  VG   L ++LSE+  E+ ++++H  L K++  +  G V L  +VITK LT+ 
Sbjct: 452  DWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRT 511

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
            P+ Y ++ + PHVQVALR+ +   +     GD V Y+IC +     G++    QRA H D
Sbjct: 512  PQEYANSASLPHVQVALRMNRER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLD 565

Query: 1241 ELKKG-DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
            ELK   D K  +D +YY   QIHPVV+R+   +EGT   R+A+CLG+DP+KF+     T 
Sbjct: 566  ELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQ 625

Query: 1300 --SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
              +++ S          + YR CEP    C +C          +   M+ + +P    + 
Sbjct: 626  RENTEQSEGESLLKTTLQLYRLCEPFRFQCVTCK---------TEQLMASAYRPGPSNSH 676

Query: 1358 YNFWRTLRCPKCPEEVEAGRISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
                +  +C K   E +   I     + NQ++     +V  +YK  ++CD   C + T +
Sbjct: 677  IAVLQ--QCAKS--ECQTAPIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFNTRT 732

Query: 1417 LNLRLIGDAERGTVCPNYPRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
             +LR      + +  P   +C +G L+R+YTE DLY QL Y   + D
Sbjct: 733  HSLR------KKSHRPLCQKCRSGSLLRQYTERDLYNQLCYLRFMFD 773


>gi|241747993|ref|XP_002414368.1| DNA polymerase alpha catalytic subunit, putative [Ixodes scapularis]
 gi|215508222|gb|EEC17676.1| DNA polymerase alpha catalytic subunit, putative [Ixodes scapularis]
          Length = 978

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 308/893 (34%), Positives = 443/893 (49%), Gaps = 157/893 (17%)

Query: 661  GHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA 720
            GH++  +DL+VLLHR    ++P+  WS++GRLKR     L K         +PG      
Sbjct: 197  GHDVQSYDLNVLLHRMITNKIPN--WSRLGRLKRGNAAVLVKA----DKQMTPG------ 244

Query: 721  GRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE 780
             RL+CD  + S++L++  SY LT+LA+T L+K R E+GP  +  M+ +   L++L++   
Sbjct: 245  -RLVCDLKISSKELVQCKSYDLTELARTLLHKQRLELGPERLQSMYSSSAQLLKLVDLTM 303

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
             DA   + LM  L+VLPL  Q+TNI+GN+  +TL G R+QR EYLLLHAF  + YI PDK
Sbjct: 304  MDAEFCLRLMSELNVLPLALQITNIAGNVLSRTLLGGRSQRNEYLLLHAFSDRNYICPDK 363

Query: 841  FTYVKETKMAKQRSN---HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
             ++ K+    + R     H   D  +   T         T+  + R  K  P       +
Sbjct: 364  -SFKKQAVKVRLREASLLHSSIDAIIRHPT---------TTRRNSRLPKTNPRKVQPTAV 413

Query: 898  ----EPKKGLYDKYILLLDFNSLYPSIIQEYNICFT------TVERSPDGLVP------- 940
                 PKK            +S+ PS     +  +T      T   S     P       
Sbjct: 414  VWSWSPKK------------DSMTPSSCSWTSTAYTPPSSKSTTSASRPWTCPRVAATRR 461

Query: 941  ----------HLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTAS-GLKI-QQLDIQQQAL 987
                       LPSS    GVLP  ++ LV+ RR VK  MK A  G  + QQ DI+Q+AL
Sbjct: 462  ARAQAEDQIPELPSSSAEPGVLPSEIRKLVESRRQVKNLMKAADVGADLYQQYDIRQKAL 521

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            KLTANSMYGCLGF+ SRF+AKPLA LIT +GREIL  T +LV+  + L+VIYGDTDSIMI
Sbjct: 522  KLTANSMYGCLGFAQSRFFAKPLAALITSRGREILMQTKELVE-KMGLDVIYGDTDSIMI 580

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMP 1106
            ++   D+ +   +  KV  E+NK YK LEID+DG++K MLLLKKKKYAA+ V    +G  
Sbjct: 581  NTNSRDLKEVSKLGNKVKAEINKLYKQLEIDIDGIFKSMLLLKKKKYAALVVSVGPNGQV 640

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
                + KGLD+VRRDWS L+++ G++ + ++LS+ S ED+VE IH+ LM++   ++   +
Sbjct: 641  STSKQLKGLDVVRRDWSELARKTGEYVIDELLSDNSREDIVEKIHSYLMQLAAKIQGDLL 700

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
             L  + +TK                                                   
Sbjct: 701  PLSDFCVTK--------------------------------------------------D 710

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            GSS    QRA HP+EL KG+    ID  YY +QQIHPVV+R+CA I+GT    +A+ LGL
Sbjct: 711  GSSQTATQRAYHPEEL-KGNDSLSIDKQYYLAQQIHPVVARICAPIDGTDAAMIAEVLGL 769

Query: 1287 DPSKF------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVC 1340
            +P+ +      +   +E   +D  +S L        Y+ CE + L CPS      C AV 
Sbjct: 770  NPAHYRHYNHNEEDDTERRLNDGGASGL------ALYKSCERVKLRCPSEG----CTAV- 818

Query: 1341 SSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYK 1400
                ++V +   +   E  F     CP+C   +  G I+   + NQV       +S +Y 
Sbjct: 819  ----IAVEDIFERTGVELRFVLE-ECPQCKTAL-CGYIN--ALCNQVTLFIRDCISKFYA 870

Query: 1401 GLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHL 1460
            G ++C+D  C + T  L LR +  +     C         +  +Y  +DLY QL Y   L
Sbjct: 871  GWLVCEDSVCCHRTRRLPLRFVKASPLCFACE-----RSVMHPEYKTSDLYNQLRYLSKL 925

Query: 1461 LDTQRGIEKMEISAKI--PLEKELNK----IRPVVALAASTVQRIRERCAYGW 1507
             D  R +  +  S K   P    L      + P++  + S   + R +   GW
Sbjct: 926  FDFSRAVASLPESDKTFHPTNNTLTPSQLILDPIIFRSGSLPLKRRTQWHGGW 978



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 337 FYILDAHEQLSGANMGTLYLFGKVKA--GSTHHSCCVVVKNMQRCVYAIP 384
           F+ LDA+E     N G ++LFGKVK    ST+ SC V V N+ R VY +P
Sbjct: 81  FFWLDAYEDYF-KNPGVVHLFGKVKLLDASTYASCTVTVCNIPRKVYLLP 129


>gi|385304086|gb|EIF48119.1| dna polymerase alpha catalytic subunit [Dekkera bruxellensis
            AWRI1499]
          Length = 569

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/561 (41%), Positives = 316/561 (56%), Gaps = 37/561 (6%)

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
            ++ F + +L L++QLTN++GN W +TL G RA R EY+LLH F     IVPDK       
Sbjct: 33   DVAFGIQILSLSKQLTNLAGNAWSRTLGGTRAGRNEYILLHEFTRNGXIVPDK------- 85

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                ++  HG  D       NE A      +    RK K    Y GGLV EP KGL   Y
Sbjct: 86   -EXXRQKRHGTSD-------NEPA------TAAAGRKAK----YQGGLVFEPVKGLVKNY 127

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERS--PDGLVPHLPSSKT-TGVLPELLKNLVQRRRM 964
            + ++DFNSLYPSIIQE+NICFTTV+RS   +  +P +PS +T  GVLP+LL  LV RRR 
Sbjct: 128  VTVMDFNSLYPSIIQEFNICFTTVDRSKLTEDELPEVPSPETPRGVLPKLLHELVSRRRE 187

Query: 965  VKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            VK  +K    S  +  Q DI+Q+ALK TANSMYGCLG+ NSRFYAKPLA L+T +GREIL
Sbjct: 188  VKKLLKDPRISTQERIQYDIKQRALKXTANSMYGCLGYXNSRFYAKPLAMLVTNRGREIL 247

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
              T  L + +L + V+YGDTDS+M+ +G D + +A   A    + VN +YK LEI +D +
Sbjct: 248  MDTRHLAE-SLGMRVVYGDTDSVMVDTGCDTMKEALKFAEDFRKRVNDRYKLLEIGIDNV 306

Query: 1083 YKRMLLLKKKKYAAVKVQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +K+MLL  KKKYAAV       G     +E KGLDM RR++  LSKEV  F L ++L + 
Sbjct: 307  FKKMLLHAKKKYAAVNCTINXXGXESTSLEVKGLDMKRREYCPLSKEVSTFILEKVLGDN 366

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E+ + +I+  L  +   +    + + K  I   L+K P  YP  K  P VQVALRL+ 
Sbjct: 367  DPEEALTAIYGYLEGITTKLXBNXIPMVKLKINTRLSKDPVQYPGGKTMPAVQVALRLRD 426

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
             G      AG  + +II  E      S   +A+RAR   E+     K+  D D+Y  +Q+
Sbjct: 427  QGKIX--KAGSVITFIITNEBXDKXAS---VAERARSIQEVLSDQSKYEPDADFYLEKQL 481

Query: 1262 HPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCE 1321
               +SRL   IEG    RLA  LGLD  K++++            L   V D ER+R  +
Sbjct: 482  FAPISRLLEKIEGYDVVRLAQSLGLDSRKYEARARSLEREXGLQPLESTVTDSERFRDAK 541

Query: 1322 PLILSCPSCSSTFDCPAVCSS 1342
              +++CP C ++     + SS
Sbjct: 542  DFLINCPKCQASIKFGGIQSS 562


>gi|328866535|gb|EGG14919.1| DNA polymerase alpha catalytic subunit [Dictyostelium fasciculatum]
          Length = 763

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/699 (36%), Positives = 381/699 (54%), Gaps = 101/699 (14%)

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRS 854
            ++PLT+QLTN++GNLW K+L G RA+R+EYLLLH F  KKYI+PDK              
Sbjct: 2    LIPLTKQLTNLAGNLWNKSLTGNRAERIEYLLLHNFYQKKYILPDK-------------- 47

Query: 855  NHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
                            +  D+  + N   K     A++GGLVLEPK+  YDKY++LLDFN
Sbjct: 48   ---------------QSRRDSLAASNKRAKA----AFSGGLVLEPKRAYYDKYVVLLDFN 88

Query: 915  SLYPSIIQEYNICFTTVER---------------------------SPDGLVPHLPSSKT 947
            SLYPSIIQEYN+CFTT+ R                              G    +P S T
Sbjct: 89   SLYPSIIQEYNVCFTTIPRIKKDLGDQSKFAGVDEVDKPATSTRSLGSKGWELAVPPSNT 148

Query: 948  T--GVLPELLKNLVQRRRMVKTWMKTASGLKI-QQLDIQQQALKLTANSMYGCLGFSNSR 1004
               G+LP++L  LV RR+ V+  M+      I QQLDI+QQA+KL ANSMYGCLGF++SR
Sbjct: 149  VAKGILPQVLNYLVNRRKDVRKKMEVEKDATIKQQLDIKQQAIKLVANSMYGCLGFTSSR 208

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
            FYA PLAEL+T++GRE L  + D+ +  +N  VIYGDTDSIM+++G+    +A+ I  ++
Sbjct: 209  FYALPLAELVTRKGRENLEKSADITE-RMNHSVIYGDTDSIMVYTGVSTYNEAQDIGRQI 267

Query: 1065 IQEVNKKYK--CLEIDLDGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIERKGLDMVRRD 1121
              ++N ++K   +EI LDG++KR+LLLKKKKYAA ++ +  D     VI+ KGLD+VRRD
Sbjct: 268  KTKINNQFKNSVMEIGLDGVFKRLLLLKKKKYAALIETKLSDNTFKTVIQNKGLDIVRRD 327

Query: 1122 WSLLSKEVGDFCLSQILS--ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            W  L+K +G+  L  +LS  E+    ++E I + L ++++D+  G V++++++ITKTL+ 
Sbjct: 328  WCDLTKTIGNKILEMLLSGEEKESSKLLEEIKSFLEQIRKDINEGLVSIDQFIITKTLSA 387

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
             PEAY D ++ PHV VAL +K+ G       GD +PY+I    G ++ +    ++RA HP
Sbjct: 388  NPEAYNDGEHPPHVNVALEMKRKGLI--AQQGDAIPYVITLGNGNNNSNLESWSKRALHP 445

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
             ++   +    ID+D+Y +QQI P   R+   + G   ++LA  LG+   K++SK ++  
Sbjct: 446  SDITSFE---QIDLDWYLAQQILPPTYRI-TELLGIEEQKLASWLGMSNIKYKSKSNQQN 501

Query: 1300 SSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
                 + L     ++ R++ CE    +CPSC           ++   +      PE +  
Sbjct: 502  QGGFDNRLQQQQVEDTRFKDCEKPEFNCPSCRKM--------TVFSGIKRITLGPEDDRE 553

Query: 1360 FWRT-LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
               +   C  C ++         ++ NQ+  Q   F+  +        D   K   CS  
Sbjct: 554  VIESGTTCQHCQKQ-----FGLAVLLNQLTMQTRSFIKQH-------QDWNLKCVECSHV 601

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYF 1457
             +   D  +   C     CNG+L++      L +QL YF
Sbjct: 602  SKHYSD--KSFKCTR--SCNGKLIQIMNCQKLLRQL-YF 635


>gi|145521204|ref|XP_001446457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413935|emb|CAK79060.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1344

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 326/1174 (27%), Positives = 548/1174 (46%), Gaps = 217/1174 (18%)

Query: 329  VDDDGSLPFYILDAHE-QLSGANMGTLYLFGKVKAG--STHHSCCVVVKNMQRCVY-AIP 384
            V+ +GS+ FY +D +E Q+     G+L++FGKVK    + + SC +  ++ ++  Y +  
Sbjct: 210  VEKNGSILFYWIDIYEDQIRFP--GSLFVFGKVKNHKLNVYDSCSLYFEDYRKTAYLSYE 267

Query: 385  NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
            NG   +   I + +           A  KK+               L L   ++    V 
Sbjct: 268  NGRYTEQQLIQECQ-----------ALMKKV---------------LGLGSKDFTYQFVD 301

Query: 445  RRYAFGQAEIPAGENYVLKINYPFKD-PPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            R+YAF  A+IP  +   L+++Y  K    LP  +    F   L +  + +E FL+  K++
Sbjct: 302  RQYAFEIADIPTSQQQYLEVSYTLKHGQQLPVRIDNPIFKYALQSTQTLVEQFLIYNKIR 361

Query: 504  GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
            GP WL +    SC   Q +   ++ +       +  +    +  E+P   +  ++     
Sbjct: 362  GPCWLQLK---SC---QTIDTKEFHLRTQHALQLPQTGFQVYEGELPLPNLKLLSFTLTQ 415

Query: 564  NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF----N 619
             K     +I++ S    +   ++      + + P  + + T+ R       P G+    N
Sbjct: 416  CKVDKDEQIIAISYTVQNNIDLN------DAEVPEQVVYSTLARMPSDAPLPPGYIKGQN 469

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
            K+  D              SE ++L+  + ++  +D D L+GH I    ++ L+  A++ 
Sbjct: 470  KQVKDF------------ESEYSMLSSFLQDVEAIDPDGLIGHEIQKKSIEQLV--ARIA 515

Query: 680  RVPSSMWSKIGRL-KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            ++  + W+++ RL KR ++PK      IF       I     GRL+ D ++ ++D+++  
Sbjct: 516  KLKVNEWNRMSRLQKREQIPK-----NIFLRSKYLTI-----GRLVIDLWIQAKDMIKSN 565

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLP 797
             YS+T LAK  L +D +++   DV K + +  +S   L++    +    +++   L+++ 
Sbjct: 566  DYSITYLAKEFLKQDCQQL-ESDVTKNYTENAQSYQTLLQLSLKETKFVIQITQKLNIIS 624

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LTRQLTNI GN+W ++L   RA+R E LL+H F  + +++PDK + +             
Sbjct: 625  LTRQLTNICGNVWNRSLLNQRAERNEMLLMHEFFLRGFLLPDKMSKI------------- 671

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                          N  ++      ++ +    Y GGLV EPK  +Y +Y+LLLDFNSLY
Sbjct: 672  --------------NLSDEEKDQQIKEQESKKTYGGGLVFEPKADIYTQYVLLLDFNSLY 717

Query: 918  PSIIQEYNICFTTVER--------------SPDGLVPHLPSSKT---------------- 947
            PSII EYNICFTTV+R               P    P   +                   
Sbjct: 718  PSIIMEYNICFTTVQRDKINFEVDKTQLEEEPTQTKPQKSNKNKKKKDQTQDENDTKEKI 777

Query: 948  ------------TGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMY 995
                        +G+LP++++ LV  R+  K  M  ++GL  Q  +I+Q A+KL ANS+Y
Sbjct: 778  KDFIGSVDPDAGSGILPQIIEKLVNMRKQAKKEMSRSTGLMKQIYNIKQLAVKLVANSIY 837

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGID-DI 1054
            GCLGFS+SRFYA  +A LITQ+GR IL  + + V+   + +VIYGDTDS+MI +  + ++
Sbjct: 838  GCLGFSSSRFYAVGIASLITQKGRSILMDSKNTVER--SNDVIYGDTDSMMICARQEKNL 895

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGM------PY 1107
            ++   +  ++ +E+NKKYK L + +DG++  +LL+KKKKYA +K+   +D M      P 
Sbjct: 896  SEILVLGTQIAKEINKKYKKLVLAIDGVFDTLLLMKKKKYAGIKIDNLEDLMTGQTEQPK 955

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
              +E KG+D+VRR++  +SK++    L  +L  ++ +D    IH  L+ + +++RS   A
Sbjct: 956  FKMEVKGIDIVRREFCDISKKMQSHVLDILLKTKNRDD----IHGDLITLMQEIRSMFDA 1011

Query: 1168 L------------------------EKYVITKTLTKPPEAYPDAKNQPHVQVALRL-KQS 1202
            L                          ++I K L K P  Y D  + PHVQVALR+  + 
Sbjct: 1012 LSGNSNADPKQLIAQNRFITYEIPTSDFIIVKQLNKAPHEYSDTISAPHVQVALRMVNEY 1071

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G S        + Y+I CE  T    S     RA   DEL   +    ID  YY S QI 
Sbjct: 1072 GRSAQSLVNHFIRYVI-CEDPTQKNLSF----RAYTVDEL--INKNLTIDYYYYLSTQIF 1124

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
              + RLC +++  S   LA  LGL   +++ K +          + F + +E++    E 
Sbjct: 1125 DPIVRLCKNVQVISISELAQILGLKTYQYKDKVNHEF-------IDFKLEEEQKQ---EL 1174

Query: 1323 LILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRC--PKCPEEVEAGRISP 1380
            +I+     S  F CP     +C    +     + +  F + L C   +C   VE  +   
Sbjct: 1175 IIID----SFKFKCP-----VCKEEQKYSQFFDQQKLFVKQLICQSKQCSYSVENLK--- 1222

Query: 1381 GMIANQVKRQ-ADGFVSMYYKGLMMCDDETCKYT 1413
              I+NQ K        + YYKG + C+    K+T
Sbjct: 1223 -SISNQTKLMIKKDLCNPYYKGYIQCNKSKNKFT 1255


>gi|380019792|ref|XP_003693786.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Apis florea]
          Length = 1331

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/651 (40%), Positives = 360/651 (55%), Gaps = 69/651 (10%)

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP-- 943
            K+  AY GGLVLEPKKG YDK ILL+DFNSLYPSIIQEYN+CFTTV  +      +L   
Sbjct: 691  KKKAAYTGGLVLEPKKGFYDKLILLMDFNSLYPSIIQEYNLCFTTVPGAAYADYGNLSIP 750

Query: 944  -SSKTTGVLPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLG 999
             S+  +GV+P  ++ LV+ R  VK  MK  +    LK+ Q +I+Q ALKLTANSMYGCLG
Sbjct: 751  ESNLESGVIPTEIRKLVESRGEVKKLMKATNISPELKM-QYNIRQLALKLTANSMYGCLG 809

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
             ++ RFYAK LA ++T +GREIL+ T  LV+  LN EVIYGDTDSIMI++ + D  +  +
Sbjct: 810  ATHCRFYAKGLAAMVTAKGREILQHTKSLVE-KLNYEVIYGDTDSIMINTNLLDYEEVFS 868

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAV-KVQFKDGMPYEVIERKGLDMV 1118
            +  K+ QEVNK YK +E+D+DG+++ +LLL+KKKYAAV   +  +G      E KGLD+V
Sbjct: 869  VGKKIKQEVNKLYKRVELDIDGVFRYLLLLQKKKYAAVIMTKLPNGQIELTQEHKGLDIV 928

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRDW  L+ + G   L  +LS + CED VE I   L  V +++R  QV+L   VITK L+
Sbjct: 929  RRDWCQLACDTGKKILDHLLSNQPCEDRVEQIFMILHDVAQNVRENQVSLSSLVITKQLS 988

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K P  YPD K Q HVQVALRL + G       GDTVPYIIC       G+     +RA H
Sbjct: 989  KNPNEYPDTK-QAHVQVALRLNKEG-GRMWKTGDTVPYIIC-----DDGTEKSATERAYH 1041

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
             DE KK D    ID++YY   QI P+V R+C  IEG     LA CLG+D + ++SK    
Sbjct: 1042 IDEYKKKDF-LKIDVNYYLLSQIFPIVLRICDPIEGFDDVLLAKCLGVD-NIYKSK---R 1096

Query: 1299 MSSDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPAVCSSICMSVSEKPSKPET 1356
            M  +  S +   + DE++++ C PL  +C    C S      +  +I +  S        
Sbjct: 1097 MIHEEYSDI--PLTDEDKFKYCLPLKFNCKDEKCQSEI----ILKNIIIETSTG------ 1144

Query: 1357 EYNFWRTLRC--PKCPEEVEAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
              N      C  P C       +I P     +I N V       VS YY+G + C++  C
Sbjct: 1145 --NQLSLASCSNPDC-------KIPPWTYVHIIQNAVTLAVRKAVSEYYEGWLECENPIC 1195

Query: 1411 KYTTCSLNLRLIGDAERGTVCPNYPRC----NGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
               T  L L              YP C    +G L R +T+  LY Q+ ++ HL +  + 
Sbjct: 1196 GKQTQILPLGFDS---------TYPICRKCKDGELHRVFTDTKLYNQMYFYFHLFNVSQS 1246

Query: 1467 IEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
              K  +S + P       +R        T++++  R A+  V L+ I +++
Sbjct: 1247 KYKNLLS-QYP-----QGMREAYDSLKETMEKMLRRNAFSVVCLDTIFLNI 1291



 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 217/820 (26%), Positives = 365/820 (44%), Gaps = 144/820 (17%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNI-KLENPIYDTVAE 59
           M D Q   +GR + +  + + R  ALE+LK L+      G    Y I KLEN +Y+ V E
Sbjct: 1   MSDTQ---SGRIKRQKIDKTGRLSALEKLKQLK------GSKNKYEIDKLEN-VYEEVDE 50

Query: 60  DEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRI 119
            EY   V  R+ +   +I+DD   GY ++G+E            DDES+   R   K +I
Sbjct: 51  KEYTKTVIERQSD--DWIIDDGESGYIEDGRE------IFDDDLDDESIQEAR---KHKI 99

Query: 120 E--KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDE 177
              K+ KK+N                +  K  +  ML + +  KK  D K+ + ++++ +
Sbjct: 100 TGPKKNKKDN----------------IKMKGNIQNMLINMSS-KKKCDAKL-DDDNILGD 141

Query: 178 VLAEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQ 237
           +++E   D + +  + R+V +           ++NSQ++ +   +   N+ L        
Sbjct: 142 LMSELKKDNSPKMSKLRTVRNKF--------YQSNSQIIIDDEITSASNTTL-------- 185

Query: 238 NCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLL 297
               +   +++K  S+N    T+ ++  +       E    +   +      +TE    L
Sbjct: 186 ---DIHLKQDIKNSSNNQIIETENEDLTQFIGDFYVEFTTQISNIEVTTNTNTTELPLPL 242

Query: 298 SATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLF 357
              A  +EV                              FY  DA+E       G +YL 
Sbjct: 243 LTNANKEEV----------------------------FRFYWWDAYED-PYKQPGVVYLL 273

Query: 358 GKVKAGST--HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKL 415
           GKV   S   + SCC+ +KN+ R +Y +P   +  +      + + EE +++       +
Sbjct: 274 GKVFIPSLKEYCSCCLTIKNIPRRIYLLPRVYIKTS-----FKDNNEEEQLN------TI 322

Query: 416 QDVALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLP 474
           +DV         NQ  N L +  +  S V + YAF Q   PA  +Y L++ Y    PP+P
Sbjct: 323 EDVYKEF-----NQFANKLGIKEFRSSKVSKHYAFEQEGTPAISDY-LEVRYAAHYPPVP 376

Query: 475 ADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV--SWCKYEITVD 532
           +D  G +   + GT  +ALEL L++R +KGP WL I     CP P  +  SWCK ++   
Sbjct: 377 SDYSGPSIERVFGTTVNALELLLIERNIKGPCWLEI----KCPLPSNIQTSWCKIKVNCM 432

Query: 533 SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
             ++I V S       +PP+ +T +N++T  N +   NEIV  +++  HK  ID      
Sbjct: 433 KMENISVFS---EFQTLPPLVITTLNIRTSLNVKLQQNEIVMVAILIHHKYHID-----K 484

Query: 593 EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
           E  KP    HF ++       +P    ++A +  S      +    +E  LL  L+  + 
Sbjct: 485 EPPKPPFQQHFCLITHPHDIPWP----RQAREMLSNISYTKVMKFETETDLLEELLKIIN 540

Query: 653 KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
             D D+L+G++  GF  D+L+HR    +V  S WS++GRL+RS +P +R           
Sbjct: 541 NADPDLLIGYD-CGFQFDILIHRMITLKV--SNWSRLGRLRRSTLPLIR---------GK 588

Query: 713 PGIMSCIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKDR---KEVGPHDVLKMFQT 768
             +   +AGR +CD  + +++L L+  SY L  L  T L K     KE+ P +    + T
Sbjct: 589 NNLNQILAGRPICDIQVSAKELNLKVRSYDLQSLCITVLKKKENECKEIKPGECAAFYDT 648

Query: 769 LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
              +  LI+   T+A   + ++F L++LPL  Q+T I+ N
Sbjct: 649 SNKIDNLIKITLTEALYILSIVFDLNILPLALQITCIAEN 688


>gi|146164643|ref|XP_001013747.2| DNA polymerase catalytic subunit [Tetrahymena thermophila]
 gi|146145697|gb|EAR93502.2| DNA polymerase catalytic subunit [Tetrahymena thermophila SB210]
          Length = 1396

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 319/1086 (29%), Positives = 519/1086 (47%), Gaps = 154/1086 (14%)

Query: 332  DGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTH--HSCCVVVKNMQRCVYAIPNGPLF 389
            D  L  Y  DA           +Y F KV+   T+   +C + +  + R ++  P+    
Sbjct: 287  DAYLYDYFYDAQ-----VKPDKIYAFAKVQNKQTNAFDTCVIQIDTIIRNLFFYPSSDTV 341

Query: 390  QTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF 449
               +I                      ++A  LK E   Q    NV  ++ + V + YAF
Sbjct: 342  TEQQIK--------------------NEIAELLKKE---QTSRKNVE-FLGAFVDKNYAF 377

Query: 450  GQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL- 508
             +  IP G++   ++   ++   +  D KG+ F   +G+  SALE FL+ +K+ GPSW+ 
Sbjct: 378  -ELPIPRGKSRWYQVVMSYEYEVISPDTKGQYFSYCVGSTYSALETFLITKKITGPSWVR 436

Query: 509  --SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT----V 562
              ++   +SC     ++  K E  VD      +    K +   PP++V  I+LKT    V
Sbjct: 437  FQNVKDTTSC-----ITNRKLEFRVDYTNQSNIQVLQKQLP-TPPLSVVCISLKTSQQIV 490

Query: 563  FN--KRQDVNEIVSASVVCCHKAKIDTPML--ASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
             +  K++   EI + ++       ID       +++K    ++H    +K D        
Sbjct: 491  LSQKKKEYKKEIFNLNMKYHEGINIDNSNKDELNQFKSISFITHIDPTKKQDS------- 543

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
                T + +   +   C   +E  LL + ++   ++D D++V H++     +++L R + 
Sbjct: 544  ---ITKKGTLPETTKFCL--NELNLLEQFLVHFNEIDPDIVVAHDLYSTVFEIILTRIRE 598

Query: 679  CRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE 737
              +   ++ SK+  +  S++PK       +GS      M+ + GRLL DT L S++ +  
Sbjct: 599  KGIRKWNLLSKLINIGSSDIPK-------YGSSTFKTKMA-MKGRLLVDTLLSSQEFVNC 650

Query: 738  VSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLP 797
            V Y+L  LA+     +   +      + F T + L  L++    D   ++ +M+HL ++P
Sbjct: 651  VEYTLEALAQKLFKIEIPRIDAKAYQQKFATYKLLNSLVDDTYQDIDYALRIMYHLQIVP 710

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            LT+QLT+I GN+W  +LQ  RA+R E LLLH F    Y+ PD F  + E+   K++  + 
Sbjct: 711  LTKQLTSICGNIWMGSLQNQRAERNEMLLLHKFNQLNYVYPDNFKNLPES--YKKKHKNA 768

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
               +  EE        D D +  +    K+   Y GG V EP+KGLY++YI+LLDFNSLY
Sbjct: 769  QIRKQYEE--------DEDQAQGNKNPKKKENKYKGGQVFEPEKGLYNEYIVLLDFNSLY 820

Query: 918  PSIIQEYNICFTTVERSP------------------------------------------ 935
            PSIIQE+N+CFTT  R P                                          
Sbjct: 821  PSIIQEFNVCFTTCVRDPIPLEMQMAPFLGNKKAAIQYSKNQNTKENKMQDEDEEDNENE 880

Query: 936  -----DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-IQQLDIQQQALKL 989
                   ++P +   K    LP +L+ LV++R++VK  +K     + I+ LDI+Q+A KL
Sbjct: 881  QIVQTHDVLPTIEVIKGIAPLPSILQYLVEQRKVVKNQIKGQKDPQVIETLDIKQKAFKL 940

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
             ANSMYGCLGFS+SRFYA PLA  IT +GR IL  +  +V++ +   VIYGDTDS+MI  
Sbjct: 941  VANSMYGCLGFSSSRFYAMPLASFITAKGRHILFDSKKIVED-MGYSVIYGDTDSLMIKP 999

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV----QFKDGM 1105
            G ++  +A      +  +VN KYK L++D+DG++K MLLLKKKKYA +KV    + K+  
Sbjct: 1000 GTNEFLEAVKTGLSIKIKVNSKYKKLQLDIDGVFKNMLLLKKKKYATLKVANWEEVKNTN 1059

Query: 1106 PYEVIER--KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
              E +E+  KG+D+VRRDW  LS++ G+  L  IL  +S E++++ I   L+++ +D+  
Sbjct: 1060 APEKLEKEIKGIDVVRRDWCQLSRDAGNKILEIILESKSSENMLDDIKKYLIQLNDDINQ 1119

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQ 1222
              +    Y ITK LTK  + Y + KN PHV VA R +++ G          + YIIC  +
Sbjct: 1120 KNIKNSNYYITKRLTKRVDQYGE-KNLPHVAVAQRSIQEKGIDPQTYVNQIISYIICKNE 1178

Query: 1223 GTS----SGSSVGIAQ---------RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
             +         V I +         +A  P E         ID+ YY   Q+   + R+ 
Sbjct: 1179 QSKLFFVDSCMVNIQREKWWLLLVDKAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKRML 1238

Query: 1270 ASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLIL-SCP 1328
              IEG + + +A  L +  S      +  ++++   ++L       ++    P +L  C 
Sbjct: 1239 EVIEGINLQEIASILEVHYSVQHVSQNNELNAE---NVLNLKSKRNQFLTSIPRVLVDCK 1295

Query: 1329 SCSSTF 1334
             C  TF
Sbjct: 1296 KCDQTF 1301


>gi|332030575|gb|EGI70263.1| DNA polymerase alpha catalytic subunit [Acromyrmex echinatior]
          Length = 1447

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 239/589 (40%), Positives = 336/589 (57%), Gaps = 47/589 (7%)

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP-- 943
            ++  AY GGLVLEPKKG YDK +LL+DFNSLYPSIIQEYN+CFTTV  +    V  L   
Sbjct: 814  RKAAAYTGGLVLEPKKGFYDKLVLLMDFNSLYPSIIQEYNLCFTTVPGAAYTDVEQLTIP 873

Query: 944  -SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-IQQLD--IQQQALKLTANSMYGCLG 999
             S+   GV+P  +  LV+ R+ +K  MKT   L   Q++D  I+Q ALKLTANSMYGCLG
Sbjct: 874  ESNLEPGVVPTEIHKLVKSRQQIKQLMKTQKNLSPAQKMDYHIRQMALKLTANSMYGCLG 933

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKA 1059
             ++ RFYAK LA LIT +GREIL  T  LV+  L  EVIYGDTDS+MI++ I +      
Sbjct: 934  ATHCRFYAKGLAALITAKGREILEDTKHLVEK-LQYEVIYGDTDSLMINTNILEYDDVFL 992

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
            I  K+++EVN +YK +E+D+DG+++ +LLL+KKKYAAV +   DG      E KGLD+VR
Sbjct: 993  IGKKIMREVNNRYKKVELDIDGVFRYLLLLQKKKYAAVMMSKIDGQIQLTQEHKGLDIVR 1052

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RDW  L+ + G   L  +L ++S E  +E +   L  V + ++ G   L  +VITK L+K
Sbjct: 1053 RDWCPLACDTGKKILDILLCDQSSETRLEQVVQILQNVAKSVKEGTTPLSSFVITKQLSK 1112

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
             P+AYPD K   HV VALRL ++G      AGDT+PY+IC ++  +S +     +RA H 
Sbjct: 1113 NPDAYPDKKQLSHVMVALRLNKAG-GRMWKAGDTLPYVICKDETNASAT-----ERAYHI 1166

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
            DE+K  + K  +D++YY   QI PVV R+C  IEG     LA+ LGL   +F  KP +T+
Sbjct: 1167 DEVKNSE-KLKVDVNYYLLSQIFPVVLRICEPIEGIDDVFLANNLGL---QFIYKP-KTI 1221

Query: 1300 SSDPSSSLLFAVGDEERYRGCEPLILSCPS--CSSTFDCPAVCSSICMSVSEKPSKPETE 1357
            S + + +L  A+ D +R+  C PL   C +  C++                       TE
Sbjct: 1222 SCEATLNLPLAIND-DRFNNCLPLTFKCKNERCNTEIIIKDTV---------------TE 1265

Query: 1358 YNFWRTLRCPKCPEEVEAGRISP----GMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
            ++  R L    CP   +  ++ P     +I N V+      ++ YY G + C++  C   
Sbjct: 1266 FHSGRQLSLSMCPN--QDCKLPPWKYANVIQNVVQLAMRKAITKYYNGWLECENPLCSNR 1323

Query: 1414 TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
            T  L L         ++C +       + R Y+  DLY QL Y+  + D
Sbjct: 1324 TRRLPLDFTKKFPDCSMCKDV-----SMNRVYSGTDLYNQLYYYHKMFD 1367



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 219/870 (25%), Positives = 383/870 (44%), Gaps = 155/870 (17%)

Query: 4   EQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIK-LENPIYDTVAEDEY 62
           +Q   +GR R +  + + R  ALERLK  R G +R      Y ++ LEN +YD V E EY
Sbjct: 22  KQASTSGRSRRQKIDKTGRLSALERLKEARSGNKRK-----YEVEELEN-VYDEVDEKEY 75

Query: 63  DALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKR 122
              V +R+ +   +IVDD   GY ++G+E            D+ES+   R  +KQR    
Sbjct: 76  SNTVLKRQRD--DWIVDDGESGYIEDGRE------IFDDDLDEESI---REARKQRNSMA 124

Query: 123 GKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEF 182
           G            P          K  + +M+ +    K     ++K+ + ++ E+L+E 
Sbjct: 125 G------------PRKRKKEDNKKKGDIQSMIRNMPSKKDVNVIQIKDDD-ILGELLSEI 171

Query: 183 APDE---------ADRERRRRSVSSNIKSFVSVNSV--KTNSQLVTNSTNSVKENSDLIN 231
           + ++         ++R +   +V SNI      +S+  K   ++++    ++  N D   
Sbjct: 172 STNKKTTSSPKLGSNRNKFCHTVHSNITQTYQASSMNQKEADKIISEKLVTIVSNFD--- 228

Query: 232 NFVQIQNCDVVEESKELKW----ESDNSTELTKRDNFVEVKE--KVKDEVNEDVKECKKL 285
           N  Q ++  ++E+  ++      +  ++++  + +N+ +++E  K +D+  +   E  K 
Sbjct: 229 NIPQSES-QIIEDDDDMTLFDAPQKKSTSKPVELNNYSKIEENSKSEDQSTKKSMESNKQ 287

Query: 286 NAK--ISTEKDPLLSATAGWKEVS-----GGNMVLDEGKSGLNCQESEFEV--------- 329
           +A   I  E  P++  +   +++S      G+M  D   S  N +  + +V         
Sbjct: 288 SASQIIEEENTPIMDLSECVEDLSTIDFDDGSMDTDFSSSINNVKSQKIDVKTPEIGVKI 347

Query: 330 -----------------------------DDDGSLPFYILDAHEQLSGANMGTLYLFGK- 359
                                        D++    FY LDA+E     N GT+YLFGK 
Sbjct: 348 PAHKTSIKSMKIGNAIDLTEVAPQLVKTKDEEEVFRFYYLDAYEN-PYKNPGTVYLFGKT 406

Query: 360 -VKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDV 418
            V +  T+ SCCV+V  + R +Y +P   +  T           ES+++ M    K  D 
Sbjct: 407 YVSSHDTYCSCCVMVHCIPRRIYLLPRKYIKNT-----------ESQLTTMEDVYKEFD- 454

Query: 419 ALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLK 478
                 E AN++    +  +    VK+ Y+F +   P   +Y L++ Y  + P + ++  
Sbjct: 455 ------EYANKM---RIMEFNCKEVKKHYSFEKEGTPKTSDY-LEVRYNARYPAIDSNYS 504

Query: 479 GENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR 538
           G     + GT  +ALEL L++RK+KGP WL I   S  P   R +WC   +      +I 
Sbjct: 505 GPAIEHVFGTTVNALELLLIERKIKGPCWLDIKNIS--PTAGRFAWCPQIVVTSDMNNIS 562

Query: 539 VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
           + S  K     PP+ +  IN++   N +   NE+V   V+  HK  +D      E  KP 
Sbjct: 563 LCSQEK---AKPPMVIATINVRMSLNAKLQ-NEVVMVVVLIHHKYNVD-----KEPPKPP 613

Query: 599 MLSHFTVVRKLDGGIFPMGFNKEATDRNSKA-GSNVLCCESSERALLNRLMIELYKLDSD 657
               F  V +     +P    ++  D   K   + V+ CE +E  LL  L+  + K+D D
Sbjct: 614 YERQFCFVTRPRDTPWP----RQIRDAFLKVPNTEVIKCE-TESDLLEELLTLIQKVDPD 668

Query: 658 VLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS 717
           +++G++   F  DVL+ R    +V  S W+++GRLK S  P LR G+ I           
Sbjct: 669 LIIGYD-CAFQFDVLMQRMFTLKV--SNWNRMGRLKSSTPPLLR-GKIILNQA------- 717

Query: 718 CIAGRLLCDTFLCSRDL-LREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLM 773
              GR +CD  + +++L L+  SY L  L    L     + KE+ P +    F T + ++
Sbjct: 718 -FVGRPVCDIQVSAKELNLKVRSYDLQSLCSAVLKTKEHEYKEITPAETPLFFNTADKVL 776

Query: 774 ELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            L+     +A   + ++  L+V+PL  Q+T
Sbjct: 777 NLMHVTLKEAKYIITIVMDLNVIPLALQIT 806


>gi|390370603|ref|XP_001196001.2| PREDICTED: DNA polymerase alpha catalytic subunit, partial
            [Strongylocentrotus purpuratus]
          Length = 517

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/498 (42%), Positives = 301/498 (60%), Gaps = 30/498 (6%)

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q+ALKLTANSMYGCLGFS+SRFYAKPLA L+T +GREIL  T +LVQ  +NL+VIYG
Sbjct: 2    DIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMHTKELVQK-MNLDVIYG 60

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   D      +  +V  EVNK Y+ LEID+DG+++ MLLLKKKKYAA+ V+
Sbjct: 61   DTDSIMINTNSTDHDTVFKLGNRVKTEVNKLYRLLEIDIDGVFQSMLLLKKKKYAAITVE 120

Query: 1101 -FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG      E KGLD+VRRDW  L+K+VG + + QILS  S E +V++IH+ L+++ E
Sbjct: 121  RLLDGTLKTSKEMKGLDIVRRDWCDLAKKVGSYAIDQILSADSREVIVDNIHSHLVELGE 180

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             + +G + L++Y I K LTK P+ YPD K+ PHV VALRL   G      AGDTV YIIC
Sbjct: 181  KVAAGTIPLDQYEINKGLTKAPQDYPDKKSLPHVNVALRLNSQGGGKPIGAGDTVSYIIC 240

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
             +     GS++   QRA HPDEL+K +    +D  YY +QQ+HPVVSRLC  IEGT    
Sbjct: 241  VD-----GSNLPAGQRAYHPDELRKQE-HLKVDTKYYLAQQVHPVVSRLCNPIEGTDAAH 294

Query: 1280 LADCLGLDPSKFQSKPSETMSSDPSSSLLFAV-GDEERYRGCEPLILSCPSCSSTFDCPA 1338
            +A+CLGLD S +  + S     D + +LL A   DEER++  +     CP+ +   +   
Sbjct: 295  IAECLGLDASGY--RQSVRHYEDENDALLGAQEDDEERFKDADRFKFICPNSACKRE--N 350

Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
            +  S+        S  E   ++  + RC   P +         M+ N+++     +V  Y
Sbjct: 351  IVDSVFTGTG---SLAEARLSYCDS-RCGTVPAD------HVTMLGNKLRLLTRSYVQKY 400

Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYF 1457
            Y G ++C+D +C + T  L L       +G VC   P C   ++R +Y++ +LY QL +F
Sbjct: 401  YAGWLICEDTSCAHRTRRLPL---NPHRQGFVC---PVCQRAVLRPEYSDKELYTQLCFF 454

Query: 1458 CHLLDTQRGIEKMEISAK 1475
              + D ++ + +    AK
Sbjct: 455  QTIFDYEKALTENNDKAK 472


>gi|313241438|emb|CBY33693.1| unnamed protein product [Oikopleura dioica]
          Length = 570

 Score =  362 bits (930), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 350/621 (56%), Gaps = 82/621 (13%)

Query: 550  PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            P +T+ +++ KT+  K+   NE+ + ++V     +     L+S  K P      T + K 
Sbjct: 4    PQLTMVSLSFKTIPLKK--TNELAAFTLVVNKNFR-----LSSTKKVPEHDYIMTALSKP 56

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                 P  +N E    N K  S   C    E+ LLN  + EL ++D D+++GH++  F L
Sbjct: 57   ATMTLPYDWNGEMGGNNEKVES---CL--GEKHLLNIFLKELRQIDPDIILGHDLLDFGL 111

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
            + +L R +V  V    WS++GR+KR +MP++     +    A  G  +C  GRL+ DT  
Sbjct: 112  EYILQRMKVHSVNG--WSRLGRIKRKDMPRMAAQIGL----ARAGHDAC-NGRLVADTKT 164

Query: 730  CSRDLLREVSYSLTQLAKTQLN--------------KDRKEVGPHDVLKMFQTLESLMEL 775
             + +L++   Y+LT L + Q+               K+RKE  P  +++ F +  +L  L
Sbjct: 165  SAMELVKMRDYNLTSLCEEQIPEQLSGLKPHFLYACKNRKEYLPEHIVEAFGSSNTLRML 224

Query: 776  IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
            ++    D + +M +  ++  LPL  Q+TNI GN+  +TL   RA+R  YLLLHAF  K +
Sbjct: 225  LQENINDCFRNMLISSNIQSLPLAVQITNICGNILSRTLSRGRAERNAYLLLHAFHKKDH 284

Query: 836  IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
            + P    Y K+T          VED +                       K+GP +AGG+
Sbjct: 285  LPPP--PYKKKT----------VEDGD-----------------------KKGPKFAGGM 309

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-RSPDGLVPHLPSSKTTGVLPEL 954
            VLEPKKGLY  YILLLDFNSLYPSIIQEYNICFTT   ++P    P LP +   G+LP  
Sbjct: 310  VLEPKKGLYTNYILLLDFNSLYPSIIQEYNICFTTTAMQAP----PDLPKTMEEGILPFE 365

Query: 955  LKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            +K LV RR+ VK  +K      ++ +L+I+Q  LKLTANSMYGCLGF+ SRF A+PLA L
Sbjct: 366  IKKLVNRRKEVKKLIKNEKNADELARLNIRQLGLKLTANSMYGCLGFTASRFCAQPLAAL 425

Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +T +GREIL +T   V+  +NLEV+YGDTDSIMI+S   +I++   +   V +EVNK Y+
Sbjct: 426  VTAKGREILEATKVFVE-KMNLEVVYGDTDSIMINSNSTNISEVMKLGNLVKKEVNKHYR 484

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             LEID+DG YK MLLLKKKKYAA+    K+       E KGLD+VRRDWS +++  G   
Sbjct: 485  LLEIDIDGAYKSMLLLKKKKYAAIDQNGKE-------EFKGLDIVRRDWSEIARNEGRTI 537

Query: 1134 LSQILSERSCEDVVESIHNSL 1154
            L  +L E+  E+ V  IH  L
Sbjct: 538  LKLLLHEQDEEEGVRKIHEHL 558


>gi|212723758|ref|NP_001132545.1| uncharacterized protein LOC100194009 [Zea mays]
 gi|194694690|gb|ACF81429.1| unknown [Zea mays]
          Length = 273

 Score =  357 bits (915), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/273 (60%), Positives = 209/273 (76%), Gaps = 5/273 (1%)

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLF 1309
            MIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD +KFQ + +E+ + D S  LL 
Sbjct: 1    MIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSAKFQPRLTESSNQDTSMMLLS 60

Query: 1310 AVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSI----CMSVSEKPSKPETEYNFWRTL 1364
             + DE ERYRGCEPL LSCPSCS TFDCP V S I      SVS+     +   NFWR +
Sbjct: 61   VIDDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSASATSVSDPIEGKDATANFWRHM 120

Query: 1365 RCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGD 1424
            RCP+C +     + SP M+ANQ+KRQAD F+S+YYKGL MCDDE CKY+T S+NLR++GD
Sbjct: 121  RCPRCLDNTVESKFSPSMLANQMKRQADNFISLYYKGLQMCDDEGCKYSTHSVNLRVMGD 180

Query: 1425 AERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNK 1484
            +ERGTVCPNYPRCNGRLVR+Y E+DLY+QL+YFC++LD  R +EK++  A++P E+E   
Sbjct: 181  SERGTVCPNYPRCNGRLVRQYKESDLYRQLSYFCYVLDATRCLEKLDQKARLPFEREFVA 240

Query: 1485 IRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
            +   + LA   +Q+IR+RCA+GWV+L D+A+S+
Sbjct: 241  VGQTIKLALLEIQKIRDRCAFGWVQLKDLAVSI 273


>gi|440293483|gb|ELP86600.1| DNA polymerase, putative [Entamoeba invadens IP1]
          Length = 1126

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 268/959 (27%), Positives = 464/959 (48%), Gaps = 149/959 (15%)

Query: 350  NMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPM 409
            ++G+L+L GKV  GS + S C+++K + + ++  P  P  + ++++          I+ +
Sbjct: 140  SVGSLFLVGKVLEGSVYKSACLIIKGIPKILFFEPK-PDNKAEDVV--------GEINDI 190

Query: 410  AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFK 469
              ++K          ++ N  + +     I++P       G+ +    +  +  ++  F 
Sbjct: 191  ITKQK----------KMRNAKMKIETKEMIINPEDN----GEDKEKMMKKIIRGVSVEFV 236

Query: 470  DPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ-RVSW-CKY 527
            +       +G+ + ++     ++ E+ L    +KGPSW+SI           + SW CK 
Sbjct: 237  NRNESVAERGKTYKAIHQKTLTSEEILLSLYSIKGPSWISIKNAEEVGNELLKKSWACKE 296

Query: 528  EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
             I     K   + +  +   + PP+ V +++  +V        ++VS  ++      I  
Sbjct: 297  YILNLEDKTCELKTLEQKAFD-PPMNVCSLSAVSVLATSAKQPQMVSIDII--KNVNITQ 353

Query: 588  PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK-AGSNVLCCESSERALLNR 646
            PM    WK+   +  F +                 + +N+K AG   L  E   + + + 
Sbjct: 354  PM--KTWKEE--IQTFYI-----------------SQKNAKCAGKFFLTSEEVVKQIGD- 391

Query: 647  LMIELYKLDSDVLVGHNISGFDL---DVLLHRAQVCRVPSSMWSKIGRLKRSEM-----P 698
             + ++Y  D D+++ H+     L   DV+   +++       +S +GRLKR++       
Sbjct: 392  -IFQIY--DIDIVISHDFITHVLPFFDVINRSSKIVE-----FSTLGRLKRTKTGVNFSK 443

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR-EVSYSLTQLAKTQLNKDRKE- 756
            K  K +   G        + ++GRLL DT++ S++ LR E    L  L    L K+RKE 
Sbjct: 444  KDLKEKNFSGR-------NFMSGRLLVDTYVLSKEYLRGEKVNDLDVLVSNYLKKERKET 496

Query: 757  ----VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
                +   ++     T E L  + +Y E +    MEL   ++V+ +T+ LTN++GN+W  
Sbjct: 497  VDLTLSSAELFDFMNTPEGLEHMRKYQEENVKFQMELANKMNVIAMTKVLTNLAGNIWSH 556

Query: 813  TLQGARAQRVEYLLLHAF--RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
            TL G RA+RVEYLLLH F  R  ++++PDK                              
Sbjct: 557  TLNGQRAERVEYLLLHEFMKRRSEFVIPDK------------------------------ 586

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                       + +G++   YAGGLVLEP K  Y+  +LL+DF SLYPSII E+ +CFT 
Sbjct: 587  ----------RYLEGQQHKKYAGGLVLEPVKQFYNDPVLLIDFKSLYPSIIMEFAVCFTN 636

Query: 931  VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL---KIQQLDIQQQAL 987
                       +       VLPE++  LV++RR +   M+        K  Q++ +Q ++
Sbjct: 637  ---------NTIGDKSGKCVLPEIISKLVKKRRALVAEMEKLGSNEENKKAQMNTEQLSV 687

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+  NS+YGCLGF   RFY + +AE IT++GR+IL +T + VQ +    V+YGDTDS+M+
Sbjct: 688  KVMTNSIYGCLGFKGGRFYCQKIAEWITKKGRQILTATYEQVQES-GYSVVYGDTDSLMV 746

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
                  + +   +  ++ + +N KY  LEI++D ++ ++LLLKKK+YAA+ V        
Sbjct: 747  KPETRSLKETYKVGEELCKLINNKYTSLEIEIDAVFSKLLLLKKKRYAAIMVNENGETKR 806

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
            E+   KGLD+VRR+W L SKE+G++C++ IL +   E  +  + N   K+  D+R G+V 
Sbjct: 807  EL---KGLDVVRREWCLFSKEIGNYCINLILKDEGKEKTLHDLENYFKKIASDLRGGKVD 863

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + K VI K L+K P+ Y   K   HV  AL+  +        AGD V ++I   +     
Sbjct: 864  IAKLVIVKGLSKDPKEYAQ-KTIEHVSAALKSTKE-----YKAGDQVKFVI---RQNLEN 914

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
             +VG+ +RA   D+++K +  + ID +YY   QI   VSR+     G +  ++ + +GL
Sbjct: 915  ENVGVVERALPLDQIEKFE-HFQIDYEYYLENQIFAPVSRIFEVFSGMN-NKIREWIGL 971


>gi|221052706|ref|XP_002261076.1| DNA polymerase alpha [Plasmodium knowlesi strain H]
 gi|194247080|emb|CAQ38264.1| DNA polymerase alpha, putative [Plasmodium knowlesi strain H]
          Length = 1880

 Score =  330 bits (846), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 278/961 (28%), Positives = 437/961 (45%), Gaps = 192/961 (19%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE+ LL   + +L  +D+D+ +G+NI  FDL+ ++HR  V  + +   S+  +L++++  
Sbjct: 829  SEKNLLESFLQKLKTIDTDIYIGYNILNFDLEFIIHRCNVHNLNADFLSRKKKLRKNDRM 888

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK--DR-- 754
            K+ K      +G+   I+  I GRL+ D +L  +DL++  SYS+ ++  +  NK  DR  
Sbjct: 889  KVNKFNGTSSTGSMYNIIQHIKGRLIVDIYLLCKDLIKLTSYSMDEIIDSVRNKFQDRGR 948

Query: 755  ------------KEVGPHDVLKMFQT------------LESLMELIE-----YGETDAWL 785
                            P +V K F              L    E++E     Y  +  + 
Sbjct: 949  TPNSTNKTNSSSSATPPPNVFKDFSVNNINLLNCSNIHLYDAQEILENHLSMYIHSQLFS 1008

Query: 786  SMELMFHLSVLPL---TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
              E+     VL +   TR LT +SG LW ++L    ++R+EY LLH +  KK+I P    
Sbjct: 1009 VQEIGNVCKVLQIIEKTRDLTKLSGYLWSRSLLCYTSERIEYFLLHEYNRKKFITP---- 1064

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                  + K+R                       T  ND  K K    Y+GGLVL+P  G
Sbjct: 1065 ------VIKKRV---------------------KTIENDQGKSKNAAKYSGGLVLDPLCG 1097

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICF---------TTVERSPDGLV------PHLPSSKT 947
             YD ++L LDFNSLYPSII EYN+CF         T VE +  G +      P+  S+  
Sbjct: 1098 YYDTFVLYLDFNSLYPSIIIEYNVCFSTLKGKGAQTEVEATKQGEISNGVESPNRASATK 1157

Query: 948  T-----------------------------------------GVLPELLKNLVQRRRMVK 966
                                                      G+LP +LKNLV++R  +K
Sbjct: 1158 GDDSIKELSDPADSIDVMDAEPGEAVAPNESMEIDDFDKSKPGILPSILKNLVEKRAFIK 1217

Query: 967  TWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +       K + L IQ  ++KL +NS+YGCLG +N+RFYAK +A  IT +GR +L+ T
Sbjct: 1218 KLIANEKNKEKKELLLIQSLSIKLISNSIYGCLGNTNNRFYAKHMAAFITLKGRNLLQHT 1277

Query: 1026 VDLVQNNLNLEVIYGDTDSIMIHSGI-----DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
               V+   NL+VIYGDTDSIMI +GI     ++  +A  +A  +   +NK YK LE+DL+
Sbjct: 1278 KSRVEREFNLKVIYGDTDSIMIDTGIKAQGVNNYKEAFRLAHVIKNTINKSYKKLELDLE 1337

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             ++ ++LLLKKKKYA  KV   +    E  E KG++ ++RD+S +SK +G+  L  I S 
Sbjct: 1338 CIFSKLLLLKKKKYACAKVMDANMEKCEY-EMKGINFIKRDFSKISKLIGNEVLKIIFSN 1396

Query: 1141 RSCE---------------DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
            +  +               D+ E IH  L  V + +++ +  L+ +VITK LTK    Y 
Sbjct: 1397 KDGQGSGKVTDGMDVPVENDLSEQIHEYLRGVHQRIQADEFDLDFFVITKKLTKNVSEYQ 1456

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP------ 1239
            +  +  HV VA R+ + GY+   S    + Y +C  +  S   +    ++  +       
Sbjct: 1457 EKNSLGHVLVAERMMKDGYNI--SVNKEIQYCVCTSEDASKFFNKSGNEKLSNSLCCFSV 1514

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL-DPSKFQSKPSET 1298
             E+KK + K  +D DYY   QI   + RLC  IEGT+ E+LA C  + D  + ++     
Sbjct: 1515 SEIKKYNMK--VDKDYYIRNQILSPIGRLCQYIEGTNAEKLASCFNIFDVREIKTDFQTE 1572

Query: 1299 MSSDPSSSLLFAVGDEERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
             +   S+ L      EER++       L C  C+     PA+                  
Sbjct: 1573 ENYHESNVLSLLNQSEERFKDIHLKGYLICSFCAHNVK-PAI------------------ 1613

Query: 1358 YNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSL 1417
              F +  RC  C +      +S   I N +        + +YK L +C       ++CS+
Sbjct: 1614 --FIKYFRCNNCLK-----YLSIEKIRNYIFSFIHHLFATFYKQLYVC-------SSCSV 1659

Query: 1418 NL-RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL-DTQRGIEKMEISAK 1475
               R++ +  +    PN     G L    ++  +Y+ L +F  LL D  R I +  +  K
Sbjct: 1660 KTRRVLLNGAKDCPSPNCENPKGSLKPLVSKKYIYRMLEFFLFLLKDNLREIPESLVEEK 1719

Query: 1476 I 1476
            +
Sbjct: 1720 V 1720


>gi|407042202|gb|EKE41203.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba nuttalli
            P19]
          Length = 1132

 Score =  326 bits (835), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 279/979 (28%), Positives = 462/979 (47%), Gaps = 158/979 (16%)

Query: 334  SLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            +L F+ +D    +S   M G ++L GKVK  +   SC ++VK ++R ++  P       +
Sbjct: 129  NLDFFYIDL---VSVTTMKGCVFLIGKVKGDNGFISCSILVKGIRRVLFVEPK------N 179

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
            E +   K+  E        ++  +   +         ++N   +N     +++R   G  
Sbjct: 180  EFVNKPKEVIEE------LKRHYKSTNVVFVEATKEMIINPQDTNDNKELLEKRVIKG-- 231

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
                     +++   F D  L  +  G+ +  +     +  E+FL    + GPSW+  + 
Sbjct: 232  ---------IQVECYFDDKEL--NDTGKTYEKVYQKTLTCEEVFLSNYSIFGPSWIKFNG 280

Query: 513  FSSC-PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE--VPPVTVTAINLKTVFNKRQDV 569
             +    + ++ SWC  E  +D  K    +S    +    +PP+ + +I            
Sbjct: 281  LTVVRTSVEQKSWCLREYILDLKKVNPKTSIKTSITNTLIPPLNICSI------------ 328

Query: 570  NEIVSASVVCCHKAKIDTPMLAS-EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
                    +C ++ K   PM+ S +  K   +SH     + D   F +            
Sbjct: 329  ------ETICLNEEKTKKPMMVSLDVVKSVPMSHSMKAWRDDVYTFYIN----------- 371

Query: 629  AGSNVLCCESSE----RALLNRLMIELYKLDSDVLVGHNISGFDL---DVLLHRAQVCRV 681
                V C +  E    R LL ++   + + D D+++ H+++   +   D++    +V   
Sbjct: 372  --QGVKCSKGMEAKDQRELLLKVCNFIQQHDIDLIISHDMTTTLMPFFDIIESSGEV--- 426

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR-EVSY 740
              S +SK GRLKR+ +  ++      G+ A     S   GRLL DTF+ S++ L+ E   
Sbjct: 427  --SAYSKFGRLKRT-LTNIKSKDNKDGTFAGKTFFS---GRLLADTFVLSKEFLKSEKIN 480

Query: 741  SLTQLAKTQLNKDRKE-----VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
             L  L    L   R+          D+    Q    +  +  Y E ++ L ++L   ++ 
Sbjct: 481  DLNTLTSHYLGIQREYNIDDLTCSSDIELALQDKNKIENIRNYLEENSRLVIKLCNQMNA 540

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF--RAKKYIVPDKFTYVKETKMAKQR 853
            + +T++LTN++GN+W  +  G RA+RVEYLLLH F  +   YI+PDK             
Sbjct: 541  IAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPDK------------- 587

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                                          +G +   YAGGLVLEP K  Y   ILL+DF
Sbjct: 588  ---------------------------KFGEGSQHKKYAGGLVLEPVKDFYSDPILLIDF 620

Query: 914  NSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
             SLYPSII E+ +CF         L   L       +LPE++K LV RRR + + M+   
Sbjct: 621  KSLYPSIIMEFGVCF---------LNSQLGGENNKSMLPEIIKKLVMRRRQIVSEMERLG 671

Query: 974  G---LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                +K  QL+ QQ ++K+  NS+YGCLGF  SRFY + +AE IT +GR IL +T + VQ
Sbjct: 672  DKDEIKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITGKGRTILTNTCEQVQ 731

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
              ++++VIYGDTDS+M+      +   K     +  ++NK YK LEI++D +++++LLL+
Sbjct: 732  K-MDIQVIYGDTDSLMVRPPKISMNDLKTFGNNLCAQINKSYKSLEIEIDAIFEKLLLLR 790

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KK+YAA  +        +  E KGLD+VRR+W  LSKE+G +C+  ILS+     + +++
Sbjct: 791  KKRYAATMIL---DGGKKKKELKGLDVVRREWCPLSKEIGYYCIDLILSDPGLVKMQQTL 847

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
                  + E +RSG+V + + VITK L K P++YP   +  HV  AL+      S    A
Sbjct: 848  EIYFKNMAEKLRSGKVDIHQLVITKGLNKDPQSYPQKID--HVAAALK-----SSKHYKA 900

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V Y+I  E+G ++ SS   + R+   D ++K + K+  D +YY   QI+  VSRL  
Sbjct: 901  GDQVKYLI--EKGDNTKSS---SDRSIPLDVVEKLE-KFEPDYEYYLDTQIYAPVSRLFE 954

Query: 1271 SIEGTSPERLADCLGLDPS 1289
                 +  ++ + LGL+P+
Sbjct: 955  VFPSMNI-KIREWLGLNPT 972


>gi|300121996|emb|CBK22570.2| unnamed protein product [Blastocystis hominis]
          Length = 780

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 247/680 (36%), Positives = 360/680 (52%), Gaps = 84/680 (12%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  L++ L+  +  +D D++VGHNI+G DL +L  ++   R   S W ++GRL+  + P
Sbjct: 52   TEAELVHSLLKYVNTMDPDLVVGHNITGDDLFML--QSSFLRHKLSWW-EMGRLRYKQPP 108

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            +      +         M  ++GRL+ DT+  +++L+ E +YSL  LA    +   +E+ 
Sbjct: 109  RQFPPNEV--------AMKLLSGRLVVDTYTSAKELIHEDNYSLPALAAKYTSIRLRELN 160

Query: 759  PHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
                  ++     L   I+     A  + +LMF L ++PL+ Q++ ISG  WG+ L+  R
Sbjct: 161  NFSGDVLYSNATRLCTAIQSNLIAANAAAQLMFSLLIIPLSHQISCISGLPWGRCLRSNR 220

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            ++RVEY LLH FR K +I PDK   VK+ K                              
Sbjct: 221  SERVEYYLLHGFRQKNFITPDKQRKVKQQK------------------------------ 250

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL 938
                RK K    Y GGLVLEPK  LY+ ++L+LDFNSLYPSIIQEYN+C+TTV+R     
Sbjct: 251  ----RKSK----YEGGLVLEPKADLYEDFVLVLDFNSLYPSIIQEYNLCYTTVKREKKEE 302

Query: 939  VPHLPSSKTTGVLPE-----------------LLKNLVQRRRMVKTWMKTASG-LKIQQL 980
                          E                 L++ LV +RR VK  MK  S  LK +QL
Sbjct: 303  ENENEKENEKEKEKEERKEVEKEEGEDEDGDLLIRYLVTKRREVKGLMKKESNPLKRKQL 362

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q ALK+ ANSMYGCLGF+NSRF A  +A  +T+ GR IL++T  L +      VIYG
Sbjct: 363  DIRQLALKILANSMYGCLGFTNSRFCATAIASTVTRVGRYILQNTRLLAEKE-GYSVIYG 421

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSIMI++   D  +   I  ++  ++NKKYK L+ID+D ++++MLLLKKKKYAAVKV 
Sbjct: 422  DTDSIMINTATRDYQQTMEIGRELKNKINKKYKYLQIDIDYVFQKMLLLKKKKYAAVKVI 481

Query: 1101 FKDGMPYEVI-ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              +G       E +G+D+VRRDWS+L+K+ G   L  + SE S ++  +     L  +  
Sbjct: 482  SVEGTRLTTQRETRGIDLVRRDWSILTKDAGSKLLDILFSEESRDEFADQFGRYLTDLAA 541

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAY--PDAKNQPHVQVALRLK-----------QSGYST 1206
             MR+  V  EKY IT +LT+    Y   D  + PHV VA  ++              + +
Sbjct: 542  SMRNNLVPYEKYEITMSLTRSLADYRERDISSLPHVVVAQFIEIHSFIHSIDSLIHSFVS 601

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
               AGD + Y+IC     SS  S+G   +A    E++  +G    D+D+Y   Q+ P +S
Sbjct: 602  FTHAGDFIRYVICYPPNASSSPSLG--SQAFTVAEIRNSNGALKPDVDWYLRNQLLPTLS 659

Query: 1267 RLCASIEGTSPERLADCLGL 1286
            RL A ++   P  L+ CLGL
Sbjct: 660  RLIAPLKDIPPSFLSHCLGL 679


>gi|67484306|ref|XP_657373.1| DNA polymerase alpha catalytic subunit [Entamoeba histolytica
            HM-1:IMSS]
 gi|56474627|gb|EAL51989.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba
            histolytica HM-1:IMSS]
 gi|449706283|gb|EMD46161.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba
            histolytica KU27]
          Length = 1132

 Score =  323 bits (829), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 275/979 (28%), Positives = 461/979 (47%), Gaps = 158/979 (16%)

Query: 334  SLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            +L F+ +D    +S   M G ++L GKVK  +   SC ++VK ++R ++  P        
Sbjct: 129  NLDFFYIDL---VSVTTMKGCVFLIGKVKGDNGFISCSILVKGIRRVLFVEPKNEFINKP 185

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
            + + +E+     + + + F +  +++ +  +    N+ L   +   ++  ++    F   
Sbjct: 186  KEV-IEELKRHYKSTNVVFVEATKEMIINPQDTNDNKEL---LEKKVIKGIQVECYFDDK 241

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
            E+                     +  G+ +  +     +  E+FL    + GPSW+  + 
Sbjct: 242  EL---------------------NDTGKTYEKVYQKTLTCEEVFLSNYSIFGPSWIKFNG 280

Query: 513  FSSC-PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE--VPPVTVTAINLKTVFNKRQDV 569
             +    + ++ SWC  E  +D  K    +S    +    +PP+ + +I            
Sbjct: 281  LTVVRTSVEQKSWCLREYILDLKKVNPKTSIKTSITNTLIPPLNICSI------------ 328

Query: 570  NEIVSASVVCCHKAKIDTPMLAS-EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
                    +C ++ K   PM+ S +  K   +SH     + D   F +            
Sbjct: 329  ------ETICLNEEKTKKPMMISLDVVKSVPMSHSMKAWRDDVYTFYIN----------- 371

Query: 629  AGSNVLCCESSE----RALLNRLMIELYKLDSDVLVGHNISGFDL---DVLLHRAQVCRV 681
                V C +  E    R LL ++   + + D D+++ H+++   +   D++    +V   
Sbjct: 372  --QGVKCSKGMEAKDQRELLLKVCNFIQQHDIDLIISHDMTTTLMPFFDIIESSGEV--- 426

Query: 682  PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR-EVSY 740
              S +SK GRLKR+ +  ++      G+ A     S   GRLL DTF+ S++ L+ E   
Sbjct: 427  --SAYSKFGRLKRT-LTNIKSKDNKDGTFAGKTFFS---GRLLADTFVLSKEFLKSEKIN 480

Query: 741  SLTQLAKTQLNKDRKE-----VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
             L  L    L   R+          D+    Q    +  +  Y E ++ L ++L   ++ 
Sbjct: 481  DLNTLTSHYLGIQREYNIDDLTCSSDIELALQDKNKIESIRNYLEENSRLVIKLCNQMNA 540

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF--RAKKYIVPDKFTYVKETKMAKQR 853
            + +T++LTN++GN+W  +  G RA+RVEYLLLH F  +   YI+PDK             
Sbjct: 541  IAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPDK------------- 587

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                                          +G +   YAGGLVLEP K  Y   ILL+DF
Sbjct: 588  ---------------------------KFGEGSQHKKYAGGLVLEPVKDFYSDPILLIDF 620

Query: 914  NSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
             SLYPSII E+ +CF         L   L       +LPE++K LV RRR + + M+   
Sbjct: 621  KSLYPSIIMEFGVCF---------LNSQLGGENNKSMLPEIIKKLVMRRRQIVSEMERLG 671

Query: 974  G---LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                +K  QL+ QQ ++K+  NS+YGCLGF  SRFY + +AE IT +GR IL +T + VQ
Sbjct: 672  DKDEIKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITSKGRTILTNTCEQVQ 731

Query: 1031 NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK 1090
              ++++VIYGDTDS+M+      +   K     +  ++NK YK LEI++D +++++LLL+
Sbjct: 732  K-MDIQVIYGDTDSLMVRPPKISMNDLKTFGNNLCAQINKSYKSLEIEIDAIFEKLLLLR 790

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KK+YAA  +        +  E KGLD+VRR+W  LSKE+G +C+  ILS+     + + +
Sbjct: 791  KKRYAATMIL---DGGKKKKELKGLDVVRREWCPLSKEIGYYCIDLILSDPGLVKMQQIL 847

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
                  + E +RSG+V + + VITK L K P++YP   +  HV  AL+      S    A
Sbjct: 848  EIYFKNMAEKLRSGKVDIHQLVITKGLNKDPQSYPQKTD--HVAAALK-----SSKHYKA 900

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V Y+I  E+G ++ SS   + R+   D ++K + K+  D +YY   QI+  VSRL  
Sbjct: 901  GDQVKYLI--EKGDNTKSS---SDRSIPLDVVEKLE-KFEPDYEYYLDTQIYAPVSRLFE 954

Query: 1271 SIEGTSPERLADCLGLDPS 1289
                 +  ++ + LGL+P+
Sbjct: 955  VFPRMNI-KIREWLGLNPT 972


>gi|428671654|gb|EKX72572.1| DNA polymerase family B member protein [Babesia equi]
          Length = 1356

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 214/506 (42%), Positives = 296/506 (58%), Gaps = 36/506 (7%)

Query: 849  MAKQRSNHGVEDR--NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
            +A   +N+G      N+   T+ED         +D++KG +  +Y GGLV EP  GLYD 
Sbjct: 641  VAHSFTNNGYAHSTVNLHNYTDED---------DDNKKGDKRGSYEGGLVFEPISGLYDN 691

Query: 907  YILLLDFNSLYPSIIQEYNICFTT--VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            ++LLLDFNSLYPSIIQE+NICFTT  +E   +G       +  TG+LP++L+ LV  R  
Sbjct: 692  FVLLLDFNSLYPSIIQEFNICFTTAVIEEEGEGEPKVEILNDVTGMLPQILRRLVDLRFS 751

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            VK+ + +     +  QL ++Q ALKL ANS+YGCLG   SRF+AK LA  IT QGR +LR
Sbjct: 752  VKSVLASEKNEARRIQLGVRQLALKLAANSLYGCLGSVYSRFHAKHLAAYITHQGRTVLR 811

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDD------IAKAKAIAGKVIQEVNKKYKCLEI 1077
            ST + V+N+ NL+VIYGDTDS+MI++ I D         A  +A  +I  VNK +K LEI
Sbjct: 812  STKEKVENSFNLQVIYGDTDSLMINTNIKDDGQLVNFEAANNLAKTIISTVNKGHKKLEI 871

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
             +D ++ R+LLLKKKKYAA+KV       +   E KGLD +RRDWSLL+KEVG+  LS I
Sbjct: 872  GIDAIFNRLLLLKKKKYAALKVNDYSEQNFSR-EIKGLDFIRRDWSLLTKEVGNVLLSII 930

Query: 1138 LSER---SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            L+       + +VE IH +L  V + ++ GQ+  + ++IT+ LTK P+ Y D  N PHV 
Sbjct: 931  LNANYGSGVDGIVEQIHETLRDVNQRIKDGQIPTKSWLITRQLTKNPKEYADVHNLPHVS 990

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSS---GSSVGIAQRARHPDELKKGDGKWMI 1251
            VALRL + G  T  SAG  V +IIC ++  +    G +  ++ RA    E++  +     
Sbjct: 991  VALRLNEKGL-TNYSAGHEVSFIICSKESIAEIVKGDTKSLSSRAFALSEVE--ELGLSP 1047

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK-----FQSKPSETMSSDPSSS 1306
            DI YY +QQ+ P + RLC  IEGT  +RLA CL L+ S           S   +   S +
Sbjct: 1048 DISYYKTQQLFPPILRLCGLIEGTDAQRLAKCLELESSASLNVIASGTNSFEFAEQESRA 1107

Query: 1307 LLFAVGDEERYRGCEPLI-LSCPSCS 1331
            L      EE Y+  E +  L C  C+
Sbjct: 1108 LALIKRTEEHYKEVELMTRLVCQVCN 1133


>gi|167375936|ref|XP_001733786.1| DNA polymerase alpha catalytic subunit [Entamoeba dispar SAW760]
 gi|165904960|gb|EDR30082.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba dispar
            SAW760]
          Length = 1132

 Score =  323 bits (828), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 284/985 (28%), Positives = 463/985 (47%), Gaps = 170/985 (17%)

Query: 334  SLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
            +L F+ +D    +S   M G ++L GKVK  +   SC ++VK ++R ++  P        
Sbjct: 129  NLDFFYIDL---VSVTTMKGCVFLIGKVKGDNGFISCSILVKGIRRVLFVEPKKEF---- 181

Query: 393  EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
             I K ++  EE        +K  +   +         ++N   +N     ++++   G  
Sbjct: 182  -INKPKEVIEE-------LKKYYKSTNVVFAEATKEMIINPQDTNDNKELLEKKVIKG-- 231

Query: 453  EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
                     +++   F D  L  +  G+ +  +     +  E+FL    + GPSW+  + 
Sbjct: 232  ---------IQVECYFDDKEL--NDTGKTYEKVYQKTLTCEEVFLSNYSIFGPSWIKFNG 280

Query: 513  FSSC-PAPQRVSWCKYEITVD----SPK-DIRVSSSSKHVAEVPPVTVTAINLKTVFNKR 566
             +    + ++ SWC  E  +D    +PK  I+ S ++     +PP+ + +I         
Sbjct: 281  LTVVRTSVEQKSWCLREYILDLKKVNPKTSIKTSITN---TMIPPLNICSI--------- 328

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLAS-EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
                       +C ++ K   PM+ S +  K   +SH     + D  I+    N+     
Sbjct: 329  ---------ETICLNEEKTKKPMMVSLDVVKSVPMSHSMKAWRDD--IYTFYINQ----- 372

Query: 626  NSKAGSNVLCCESSE----RALLNRLMIELYKLDSDVLVGHNISGFDL---DVLLHRAQV 678
                   V C +  E    + LL ++   + + D D+++ H+++   +   D +    +V
Sbjct: 373  ------GVKCSKGMEAKDQKELLLKVCNFIQQHDIDLIISHDMTTTLMPFFDTIESSGEV 426

Query: 679  CRVPSSMWSKIGRLKRS---EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL 735
                 S +SK GRLKR+      K  K  T  G           +GRLL DTF+ S++ L
Sbjct: 427  -----SAYSKFGRLKRTLTNTKSKDNKDNTFAGK-------IFFSGRLLADTFVLSKEFL 474

Query: 736  R-EVSYSLTQLAKTQLNKDRKE-----VGPHDVLKMFQTLESLMELIEYGETDAWLSMEL 789
            R E    L  L    L   R+          D+    Q    +  +  Y E ++ L ++L
Sbjct: 475  RSEKINDLNTLTSHYLGIQREYNIDDLTCSSDIEFALQDKTKIDSIRNYLEENSRLVIKL 534

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF--RAKKYIVPDKFTYVKET 847
               ++ + +T++LTN++GN+W  +  G RA+RVEYLLLH F  +   YI+PDK       
Sbjct: 535  CNQMNAIAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPDK------- 587

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                                                +G +   YAGGLVLEP K  Y   
Sbjct: 588  ---------------------------------KFGEGSQHKKYAGGLVLEPVKDFYSDP 614

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            ILL+DF SLYPSII E+ +CF         L   L       +LPE++K LV RRR + +
Sbjct: 615  ILLIDFKSLYPSIIMEFGVCF---------LNSQLGGENNKSMLPEIIKKLVMRRRQIVS 665

Query: 968  WMKTASG---LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
             M+       +K  QL+ QQ ++K+  NS+YGCLGF  SRFY + +AE IT +GR IL +
Sbjct: 666  EMEKLGDKDEIKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITGKGRTILTN 725

Query: 1025 TVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            T + VQ  ++++VIYGDTDS+M+      +   K     +  ++NK YK LEI++D +++
Sbjct: 726  TCEQVQK-MDIQVIYGDTDSLMVRPPKISLKDLKNFGNNLCAQINKSYKSLEIEIDAIFE 784

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            ++LLL+KK+YAA  +        +  E KGLD+VRR+W  LSKE+G +C+  ILS+    
Sbjct: 785  KLLLLRKKRYAATMIL---DGGKKKKELKGLDVVRREWCPLSKEIGYYCIDLILSDPGLV 841

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
             + + +      + E +RSG+V + + VITK L K P++YP   +  HV  AL+      
Sbjct: 842  KMQQILETYFKNIAEKLRSGKVDIHQLVITKGLNKDPQSYPQKID--HVAAALK-----S 894

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S    AGD + Y+I  E+G ++ SS   + R+   D ++K D K+  D +YY   QI+  
Sbjct: 895  SKHYKAGDQIKYLI--EKGDNTKSS---SDRSIPLDVVEKLD-KFEPDYEYYLDTQIYAP 948

Query: 1265 VSRLCASIEGTSPERLADCLGLDPS 1289
            VSRL       +  ++ + LGL P+
Sbjct: 949  VSRLFEVFPSINI-KIREWLGLSPT 972


>gi|123425608|ref|XP_001306852.1| polymerase [Trichomonas vaginalis G3]
 gi|121888449|gb|EAX93922.1| polymerase, putative [Trichomonas vaginalis G3]
          Length = 1378

 Score =  312 bits (799), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 311/1249 (24%), Positives = 517/1249 (41%), Gaps = 328/1249 (26%)

Query: 350  NMGTLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ--TDEIMKLEKDAEESRI 406
            + G LYLFGK  A S    + CVV+ N +R ++ +P          EI  L + A     
Sbjct: 245  DTGKLYLFGKAFAKSKKMVTVCVVISNPRRIIHFLPTFNEIDDCKSEIQSLHQKA----- 299

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV---LK 463
                                            IV P   +YAFG ++I     ++   L 
Sbjct: 300  --------------------------------IVYPEYLKYAFGDSDISQMSQWITAELP 327

Query: 464  INYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR-- 521
             NY     P+     G+++  + G  SS  E F+++ K+ GP W+   K      PQ   
Sbjct: 328  GNYDISKIPMI----GKHYNKVFGWSSSLTECFIMRYKIMGPCWIKFKK--RVENPQNLV 381

Query: 522  --VSWCKYEITVDSPKD---IRVSSSSKHVAEVPPVTVTAINLKTVFN--KRQDVNEIVS 574
              VS   +E++ +  KD   I +   +    ++P   +  I++KT ++  K++ V  ++S
Sbjct: 382  SIVSQLNFELSDEFKKDEPEIEILDKT----DIPEFNLACISVKTEYDNTKKEHVIRMIS 437

Query: 575  ASVVC-----------CHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP-MGFNKEA 622
              V             CHKA                 +++ ++  +     P   FN   
Sbjct: 438  LRVFAKCAITKLSSNDCHKA-----------------TYYWMLGNIKNSELPGTPFN--- 477

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
                            +E+ +L R + ++   D D+++    + FD  ++  R    +V 
Sbjct: 478  ----------------NEKDMLERFITDIQNSDIDLILSFGFNTFDGQIIAQRLIQLKVK 521

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSL 742
               W +IGRLKRS  P  R   T F    S   +  ++GRL  D  + + + L   +   
Sbjct: 522  D--WYRIGRLKRS-FP--RDNITKF----SKNTLLILSGRLPVDIRVSADEFLHSKANDF 572

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
              + + +L     ++   +  ++   +  L + +   E +    + L   + ++PLT Q+
Sbjct: 573  ASVIQQELGILVPDLETSNFSQLIFNIPMLKKYVIANENNTAYIINLTRKIHIVPLTLQI 632

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            + +SG LW + L G  + R E LL H F  + Y++PDK     + K++ +R         
Sbjct: 633  SQLSGALWSRVLLGKASPRSEALLAHEFINRGYVIPDK----SQVKVSGKR--------- 679

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                  EDA                   Y GG VL+PK+G ++ Y+ +LD+NSLYPSII+
Sbjct: 680  ------EDAQ------------------YKGGHVLDPKRGFHENYVTVLDYNSLYPSIIR 715

Query: 923  EYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ---- 978
            +YNICFTT       +V +   ++ + VLP+++  L+ +R  VK  MK     + Q    
Sbjct: 716  QYNICFTT------RMVAN--PNQNSAVLPKIMAELLNKRSEVKKDMKEKGDAQFQVTQQ 767

Query: 979  ------------------------------------QLDIQQQALKLTANSMYGCLGFSN 1002
                                                 L+I+Q A+K+ ANSMYG LG+  
Sbjct: 768  IEELENKIKAGEDSVGNKNHLEALKKKLDNLDTELRSLNIKQLAVKILANSMYGYLGYKG 827

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQ-----NNLNLEVIYGDTDSIMIHSGIDDIAKA 1057
            SRF A  LAE IT++GRE L++ +D+V+     ++    ++YGDTDS+M+     D  +A
Sbjct: 828  SRFPATKLAEEITKKGREALQAVIDIVEHFQYEDSNQFSIVYGDTDSVMVDCMTRDETRA 887

Query: 1058 KAIAGKVIQEVNKKYK--------CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
            + +A  + Q V   +K         +++ LD L+K+MLL+ KKKYAA+  Q  +G     
Sbjct: 888  RNVAMGICQAVELHFKKQRKNGDAVMKLGLDHLFKKMLLVSKKKYAALD-QLPNGNLN-- 944

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNS---------------- 1153
            +E KGLDMVRRDW  L++ +  F +S  +   + +D +E I N                 
Sbjct: 945  LELKGLDMVRRDWCFLTRYLSYFVISTFMFGENSDDSIEKILNEMERVAAMLRNNGELPD 1004

Query: 1154 ----------------LMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
                            LMK +  +R   V  +  +ITK LT   E Y D  N PH  VA 
Sbjct: 1005 DQKSEVEYETSNDMKVLMKAERKVRLQSVIPQFLIITKMLTNRLETYKD--NSPHAAVA- 1061

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTS-------------SGSSVGIAQRARHPDELKK 1244
            R  Q       S G T+ YII  +  T              + +   IA +A + D +K+
Sbjct: 1062 RYMQDKMKKEISPGSTIEYIIAKDNFTPREELEGSEPMSERTQARTNIASKAVYKDLIKE 1121

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
                   DI++Y + QI   V RLC    G     LA  LG+   K+ +    +  ++  
Sbjct: 1122 VSDA---DIEWYITNQIFNPVWRLCEPFGGMEKGMLAKALGV---KYSAPSVISYDNEYQ 1175

Query: 1305 SSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTL 1364
            ++++     E        L  +CP C +            ++ S  PSK          L
Sbjct: 1176 TNVVIPHNAE--------LTFACPYCENR-----------ITASPFPSK---------YL 1207

Query: 1365 RCPKCPEEVEAGRISPGMIANQVKRQADGFV------SMYYKGLMMCDDETCKYTTCSLN 1418
            +CP C E+++       + AN + +    FV       M  KG M  + E+ +    +L+
Sbjct: 1208 KCPHCNEQIDW-----HLAANLLLQSLRKFVIDNNPNHMESKGFMEAEFESVQLPLSTLS 1262

Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGI 1467
            L       + T  P        L  K +  +++  L YF ++   ++ +
Sbjct: 1263 L-------QSTKTP--------LKLKLSPGEMFNTLRYFANIFAPRKDV 1296


>gi|70953938|ref|XP_746040.1| DNA polymerase alpha [Plasmodium chabaudi chabaudi]
 gi|56526541|emb|CAH74267.1| DNA polymerase alpha, putative [Plasmodium chabaudi chabaudi]
          Length = 1674

 Score =  301 bits (772), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 278/951 (29%), Positives = 430/951 (45%), Gaps = 204/951 (21%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE+ LL   + ++  +D D+ +G+NI  FDL+ L+HR  V  +     S+  +LK+++  
Sbjct: 627  SEKLLLQAFLNKIRTIDVDIYIGYNILNFDLEFLIHRCHVNNIDPGFLSRKKKLKKTDKM 686

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL---AKTQLNKDRK 755
            K+ K      +G+   I+  I GRL+ D +  S+D ++  SYS+ ++    +T+  +  K
Sbjct: 687  KVNKFSGTNSTGSIYNIVQNIKGRLIVDIYALSKDTIKLTSYSMDEIIDGVRTKFQEKVK 746

Query: 756  E------VGP-----------------HDVLKMF-------------------QTLESLM 773
            +      VG                   +V K F                   Q LE+  
Sbjct: 747  QQTSSNNVGTSNNNSTNQTNKNKSRENFNVFKDFIVNDINLINCSNIHLYDSEQILEN-- 804

Query: 774  ELIEYGETDAWLSMELMFHLSVLPL---TRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
             L  Y  +  +   E+    ++L L   +R LT +SG +W ++L    ++ VEY LLH +
Sbjct: 805  NLNTYINSQIFSIYEIYNVCNILQLIEKSRDLTKLSGYIWARSLLSYTSECVEYFLLHEY 864

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
              KK+I P     VK+    KQ+                    +NDT+     K K    
Sbjct: 865  HKKKFITP---IVVKK----KQK-------------------IENDTN-----KSKNAAK 893

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV------------------- 931
            Y GGLVLEP  G YD Y+L LDFNSLYPSII EYNICF+T                    
Sbjct: 894  YLGGLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFSTFNMKNYLASSDSTSKELQEE 953

Query: 932  -------------------ERSPDGLVPHLPSSKTT--GVLPELLKNLVQRRRMVKTWMK 970
                               +  P G + ++     T  G+LP +LK LV++R  +K  + 
Sbjct: 954  IEKKNIINYDESDVNQLDNKEEPVGDLSNIDYFDKTKPGILPSILKQLVEKRAFIKKLIA 1013

Query: 971  TASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
            +     K + L +Q  ++KL +NS+YGCLG +++RFYAK +A  ITQ+GR +L+ T   V
Sbjct: 1014 SEKNKEKKELLLVQSLSIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKV 1073

Query: 1030 QNNLNLEVIYGDTDSIMIHSGI--DDIAKAK---AIAGKVIQEVNKKYKCLEIDLDGLYK 1084
            +   NL VIYGDTDSIMI +GI   DI   K    +A  +   +NK YK LE+DL+ ++ 
Sbjct: 1074 EKEFNLTVIYGDTDSIMIDTGIKSSDINNYKESLKLAHTIKNNINKNYKKLELDLECIFS 1133

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            ++LLLKKKKYA  KV   +   YE  E KG++ ++RD+  +SK +G+  L  I S +  +
Sbjct: 1134 KLLLLKKKKYACAKVIDPNLGKYEY-EMKGINFIKRDFCKISKLIGNELLRIIFSNKEYK 1192

Query: 1145 ---------------------DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
                                 D+ E IH  L  +   +++ +  LE YVITK LTK    
Sbjct: 1193 PAQPNATTSSLNHADDLSIQNDLSEQIHEYLRSIYHRIQNDEFDLEHYVITKKLTKNVHE 1252

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR-----H 1238
            Y +  +  HV VA R+ + GY+        + Y +C  +      + G  +         
Sbjct: 1253 YQEKNSLGHVLVAERMIKDGYNI--CVNKEIQYCVCTNEDALKFYNKGNEKLNSSLCCFS 1310

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
              E+KK + K  ID DYY   QI   ++RLC  IEGT+ E+++ C  +   K      + 
Sbjct: 1311 ISEIKKYNLK--IDKDYYIRNQILLPINRLCEYIEGTNVEKISSCFNIYNVKEIKTEEQN 1368

Query: 1299 MSSDPSSSLLFAVGD-EERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPET 1356
              S   +++L  + + EER++       L+C +CS     P +                 
Sbjct: 1369 EESYLETNVLSLLSESEERFKNIHLKGFLTCHNCSHNIK-PVI----------------- 1410

Query: 1357 EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
               F +  RC KC        ++   I N +    D   S +YK + +C+       +C 
Sbjct: 1411 ---FIKYFRCNKC-----LSLLAIEQIRNYIFSFIDHLCSTFYKQMYICN-------SCL 1455

Query: 1417 LNLRLIGDAERGTVCPNYPRCNGR------LVRKYTEADLYKQLTYFCHLL 1461
            +  R +   +    CPN    N +      L +KY    +Y  L YF +LL
Sbjct: 1456 VKTRRVFLKDYNN-CPNLNCDNPKNALKPILSKKY----IYSILEYFLYLL 1501


>gi|154418827|ref|XP_001582431.1| DNA polymerase family B containing protein [Trichomonas vaginalis G3]
 gi|121916666|gb|EAY21445.1| DNA polymerase family B containing protein [Trichomonas vaginalis G3]
          Length = 1367

 Score =  295 bits (756), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 185/505 (36%), Positives = 278/505 (55%), Gaps = 56/505 (11%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSE+ LL   +  + KLD D+L  + +   D+ V+  R +   V    W +IGRL RS  
Sbjct: 497  SSEKKLLKNFVRLIDKLDIDILASYTMFTNDIQVIFDRMKTLNVEE--WFRIGRLNRSTQ 554

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
             K  K    F          C++GR+  D     R+ L   +  L+ ++  +    R+++
Sbjct: 555  IKTSKYNASF----------CLSGRIAVDIRTNLREFLNLPANDLSSVSLQEFGIKRQQI 604

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
               D+LK       ++ LIE+ E D  +  +LM   ++L +T +L+ ISG LW KTL+  
Sbjct: 605  ENVDILKEINDRNKVISLIEFFERDTNILTKLMEKTNLLEITFRLSQISGLLWCKTLKSK 664

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
             + R E +LLH+F+ K +++PDK          KQ+++                      
Sbjct: 665  PSYRCESILLHSFKEKNFVLPDK----------KQKADFA-------------------- 694

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-RSPD 936
                  K K G  Y G  VL+PKKG YD  I+LLDF SLYPSII EYN+CFTTV+ R+P+
Sbjct: 695  -----PKSKLG-KYRGATVLQPKKGFYDTIIVLLDFTSLYPSIISEYNLCFTTVDKRNPN 748

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLTANSM 994
                   +    G+LPE+++NL + R  +K  M T    K    +  I+QQA+K  +NS+
Sbjct: 749  S--EEAVNCGRKGILPEIMENLTKMRIELKNKMNTLQDDKFNFDRFLIKQQAIKSLSNSI 806

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YG LGFS SRF +  +A LIT++GR +L+ TV+ V++     VIYGDTDS+M+++G   +
Sbjct: 807  YGYLGFSLSRFASNEIAALITERGRFVLQKTVETVESLGKFSVIYGDTDSVMVNTGTKSV 866

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
             +AK IA  + ++V K+YK L++ + GL+ +MLL+ KKKY AV V   D   +   E KG
Sbjct: 867  EEAKKIANDISEKVTKQYKFLKLTVSGLFTKMLLVAKKKY-AVTVYDDDNKCHR--EVKG 923

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILS 1139
            LDMVRRDW  L+K +  F L Q+++
Sbjct: 924  LDMVRRDWCQLTKYLSSFVLDQMMN 948



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            ++  E  +I + L K    Y D +N PHV +ALR+ + G      A  T+P I+      
Sbjct: 1114 KITKEMLIIYRQLNKKISEYSDKRNNPHVSIALRMMKRGEKVPQHA--TIPMIV------ 1165

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
            +S     +  + + PDE+K       ID  +Y   QI P + RL A  E      +   L
Sbjct: 1166 TSPDVRELCDKVKLPDEVKDMSE---IDSQWYLVNQILPPIIRLFAPYEHVGSSTIGRSL 1222

Query: 1285 GL 1286
            GL
Sbjct: 1223 GL 1224



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 59/262 (22%)

Query: 331 DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
           D+ ++ F++L  HE+        L+LFGK     T  + C+ + N    +Y  P      
Sbjct: 117 DENTIDFFLLHIHEE-----DNKLFLFGKNVCIDTSTTICIQITNPIYYLYFYP------ 165

Query: 391 TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
              I+  E D              L D    L  E+   L++    N         Y FG
Sbjct: 166 ---IVGHEDD--------------LIDEIRELSIEMNGYLISYEYKNL-------NYCFG 201

Query: 451 QAEIPAGENYVLKINYPFKDPPLPA--DLK-----GENFCSLLGTHSSALELFLVKRKVK 503
              +     ++        +  LPA  D+K     G+N+  L+G   S  E F + +K+K
Sbjct: 202 TENLDKNTKWL--------ECQLPATCDVKNFPQNGKNYFLLIGRTYSLTENFEMTQKIK 253

Query: 504 GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV-PPVTVTAINLKTV 562
           GP +L     +       V++C     V+S  D+ +    K +  + PP+ V  I++ T 
Sbjct: 254 GPQFLRAKNLT---QKDPVTFCPM-FCVNSIFDVEI--IEKKIDRLPPPLNVCVISIGTY 307

Query: 563 FNKRQDVNEI--VSASVVCCHK 582
           FN+ +  +EI  ++  V   HK
Sbjct: 308 FNEEKKTHEIYLLNVRVFMNHK 329


>gi|307104026|gb|EFN52282.1| hypothetical protein CHLNCDRAFT_139024 [Chlorella variabilis]
          Length = 1342

 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 169/442 (38%), Positives = 225/442 (50%), Gaps = 39/442 (8%)

Query: 324 ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAI 383
           +    +D  G LPFY++DAHE+   A  GT+YLFGKV     H SCC +V+ MQR VY +
Sbjct: 369 DGSLPLDGGGQLPFYLVDAHEE--AAQPGTVYLFGKVPLQDRHLSCCAIVRGMQRNVYVV 426

Query: 384 PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
           P   +  TD I   E  A     +       L      +K E+   L    V+   + PV
Sbjct: 427 PRKAVAGTD-IAAAEAAAAADPAARKELLPLLHQAFSEVKAEVRGLLAQHRVTQMSMKPV 485

Query: 444 KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
           KR+YAF    +P G  +VLK+ YP   P LP  L G  F +LLGT+ S LE   +KR++ 
Sbjct: 486 KRQYAFEDPAVPHGTQWVLKVKYPATQPALPLGLSGTTFSALLGTNQSMLEALSLKRRIM 545

Query: 504 GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
           GP WLSI       A  +VSWCK E+ V   K++  + +     E PP+TV A++++T  
Sbjct: 546 GPCWLSIKHPRRVAAEAQVSWCKVEVEVAGHKEVTANPADNK--EAPPLTVAALHVQTAV 603

Query: 564 NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
                 NE+V+ASVV     + D PM   EW  P  L HF+ VR+LDG  FP GF+ E  
Sbjct: 604 PAGGAANEVVAASVVYLQAVRTDGPMAQEEWNHPSQLRHFSAVRRLDGHPFPPGFDAEVR 663

Query: 624 DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCR--- 680
             N                            +SD  +G    G  L  +  R   CR   
Sbjct: 664 KAN----------------------------ESD--IGRRNGGAMLS-MQARFLPCRHAF 692

Query: 681 VPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
            P   WS +GRLKRS  P L  G   FG GA PG +S +AGRLLCDT+L +R+L+ +V Y
Sbjct: 693 FPVPNWSSLGRLKRSRFPSLGGGGHQFGGGAGPGTLSVVAGRLLCDTYLSARELVHQVDY 752

Query: 741 SLTQLAKTQLNKDRKEVGPHDV 762
           +LT LA   L ++R E+GP DV
Sbjct: 753 TLTTLAGALLKQERTELGPTDV 774



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 177/379 (46%), Gaps = 47/379 (12%)

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT-------SS 1226
            T  LTK P+ YPDAKNQPHVQVALR + SG   G  AG+TVPYIIC E          ++
Sbjct: 961  TVELTKRPDDYPDAKNQPHVQVALRRRASGKQNGVMAGETVPYIICREADADGGLVPLAA 1020

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
            G   G+A RA HP+E+       ++D +YY +QQ+ PVVSRLCA +EGT   RLA+CLGL
Sbjct: 1021 GGGKGLADRAFHPEEV-NASSALVVDTEYYLAQQVFPVVSRLCAPMEGTDAGRLAECLGL 1079

Query: 1287 D---PSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSI 1343
            D        +        D   +   ++ DE+RY+ C+PL+LS P  ++ +  P V   +
Sbjct: 1080 DGARFRAAAAAGRGEAREDALLAAAASLDDEDRYKDCQPLMLSAPGGAAPWRFPGVRELL 1139

Query: 1344 CMSVSEKPSKP----------ETEYNFWRTLRCPKCPEEVEAGR-ISPGMIANQVKRQAD 1392
                  KP  P                 +          VE  R +S   + NQV+    
Sbjct: 1140 ------KPHPPVAIDAALLPPPPGGGEGQGDGEGGASAAVEPRRPLSTAALCNQVRLAQR 1193

Query: 1393 GFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYK 1452
              +  YY+G +  DDET      ++ L +  DA  G V P+  RC G +     E +LY 
Sbjct: 1194 AAIRRYYEGRVRSDDETAPCEGRNVCLAVREDAAPGMVPPDL-RCTGHMRLVVGEGELYT 1252

Query: 1453 Q-----------------LTYFCHLLDTQRGIEKME-ISAKIPLEKELNKIRPVVALAAS 1494
            Q                 L+Y   L D +  +  ++   A     ++L  +RP +  AA+
Sbjct: 1253 QASGGGLAAAAAGVQPARLSYLHRLFDVEGVLHSLDNREAAEAAAQKLAPLRPALDEAAA 1312

Query: 1495 TVQRIRERCAYGWVKLNDI 1513
                +R+  AY WV L  +
Sbjct: 1313 AAAALRDASAYRWVDLGAM 1331



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 1017 QGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLE 1076
            QGREIL+STV++VQ+++  EVIYGDTDSIM+++   D+A+   +  ++ +EVNK+Y+ LE
Sbjct: 871  QGREILQSTVNVVQDSVGKEVIYGDTDSIMVYTASTDLAEVVKLGQQIKREVNKRYRLLE 930

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFK-DGMPYEVIER 1112
            I++DG++K MLLLKKKKYA+VKV+ + DG   E+ +R
Sbjct: 931  IEMDGVFKCMLLLKKKKYASVKVEVQADGSTVELTKR 967



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 44/46 (95%)

Query: 889 PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
           P YAGGLVLEP+KGLYD+++LLLDFNSLYPSIIQEYNICFTTV+R 
Sbjct: 825 PYYAGGLVLEPRKGLYDRFVLLLDFNSLYPSIIQEYNICFTTVQRG 870



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 25 ALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLG 84
          AL++LK L++ G +  DS  + ++ E  IYD +    Y  LV +RREE  GF++D DGLG
Sbjct: 21 ALDKLKELKKSGAKQVDS--FELREEEAIYDELDAAGYAKLVQKRREEGGGFVIDKDGLG 78

Query: 85 YGDEGQEEDW 94
          Y D G+E+DW
Sbjct: 79 YVDVGEEDDW 88


>gi|19173639|ref|NP_597442.1| DNA-DIRECTED DNA POLYMERASE ALPHA [Encephalitozoon cuniculi GB-M1]
          Length = 956

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 244/859 (28%), Positives = 389/859 (45%), Gaps = 218/859 (25%)

Query: 481  NFCSLLGTHSSAL--------ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            +F S    HS A+        E  +V RK++GP  + ++ +S  P+ Q       EI V 
Sbjct: 125  SFDSFFSDHSEAIITEFANPIENIIVSRKLRGPCVVKVNGYSG-PSSQ-------EIVVK 176

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
            SP  +    +SK    +P +T+ +                                 LA 
Sbjct: 177  SPSMVHFVCNSK----LPKLTLGS---------------------------------LAI 199

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD-RNSKAGSNVLCCESSERALLNRLMIEL 651
            E+ + G+L +   VR    G    G  + A    NS+A        S+  AL + L   +
Sbjct: 200  EFSRAGILKYSLYVR----GAHRCGAVRSAVQGENSEAEGMGYVLHSTPDALASHLNAAM 255

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
                 D +V HN+                 PS +  K+                      
Sbjct: 256  ASEGIDCIVYHNL-----------------PSLILRKLE--------------------- 277

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD-----RKEVGPHDVLKMF 766
                   I+G + CD F  +   ++   +S+ +L+ T LN +     +K   P D    +
Sbjct: 278  -------ISGMVRCDLFTFASGNIKGCDFSVEELS-TALNLEVSLELKKGREPSDSRLGY 329

Query: 767  QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            Q    L  LI   E++A L  ++      L L+++++ +SG +  +TLQ  RA+R+EY L
Sbjct: 330  Q----LRRLI--SESEAIL--QIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTL 381

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH   A+ ++ P   +                                           +
Sbjct: 382  LHELYARGFLFPPTVS-------------------------------------------R 398

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPDG------ 937
            R   Y+GGLVL P+ G Y+  +LLLDFNSLYPSIIQE+N+CF+T+   +RS  G      
Sbjct: 399  REVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVCFSTIGMFDRSISGNMSSEQ 458

Query: 938  LVPHLPSSKTT--GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSM 994
            LV     +K +  G LP +L+  V+RR+ VK  +K   +  + + LDI+Q+ALKLTANS+
Sbjct: 459  LVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGGTPEETKALDIRQKALKLTANSI 518

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI--- 1051
            YGCLGF  SRF    +A  IT +GR++L     + +    + +IYGDTDS+M+H+G+   
Sbjct: 519  YGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEGECGVRIIYGDTDSVMVHTGLAGK 578

Query: 1052 -DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
              +  KA  ++ ++   +N +YK +EI++D ++K++LL KKK+YA + +   DG     I
Sbjct: 579  KSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLLLYKKKRYAGLYMT-DDGKGR--I 635

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED----------------------VVE 1148
            E KGLD+VR+D+  +S+++    L  +L++  CED                      + E
Sbjct: 636  EYKGLDLVRKDFCEVSRKICRIVLELLLAD--CEDPETYRRFYEGEPKMVLNDGSIKIRE 693

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            ++++ L KV  D+    +   ++VI  TL+K PE+Y      PHV +ALRLK+ G     
Sbjct: 694  AVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYDACAALPHVSLALRLKERGMKF-- 749

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD V Y+I             I +RA HPDE       + ID  YY S QI P + R+
Sbjct: 750  EQGDVVCYVI-----GKGDPGQAIHKRAYHPDE------DFAIDYGYYISSQILPPLLRV 798

Query: 1269 CASIEGTSPERLADCLGLD 1287
               ++G    ++    G++
Sbjct: 799  VGIVKGFHAGKIGKIFGVE 817


>gi|392512664|emb|CAD26619.2| DNA-DIRECTED DNA POLYMERASE ALPHA [Encephalitozoon cuniculi GB-M1]
          Length = 951

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 244/859 (28%), Positives = 389/859 (45%), Gaps = 218/859 (25%)

Query: 481  NFCSLLGTHSSAL--------ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            +F S    HS A+        E  +V RK++GP  + ++ +S  P+ Q       EI V 
Sbjct: 120  SFDSFFSDHSEAIITEFANPIENIIVSRKLRGPCVVKVNGYSG-PSSQ-------EIVVK 171

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
            SP  +    +SK    +P +T+ +                                 LA 
Sbjct: 172  SPSMVHFVCNSK----LPKLTLGS---------------------------------LAI 194

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD-RNSKAGSNVLCCESSERALLNRLMIEL 651
            E+ + G+L +   VR    G    G  + A    NS+A        S+  AL + L   +
Sbjct: 195  EFSRAGILKYSLYVR----GAHRCGAVRSAVQGENSEAEGMGYVLHSTPDALASHLNAAM 250

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
                 D +V HN+                 PS +  K+                      
Sbjct: 251  ASEGIDCIVYHNL-----------------PSLILRKLE--------------------- 272

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD-----RKEVGPHDVLKMF 766
                   I+G + CD F  +   ++   +S+ +L+ T LN +     +K   P D    +
Sbjct: 273  -------ISGMVRCDLFTFASGNIKGCDFSVEELS-TALNLEVSLELKKGREPSDSRLGY 324

Query: 767  QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            Q    L  LI   E++A L  ++      L L+++++ +SG +  +TLQ  RA+R+EY L
Sbjct: 325  Q----LRRLI--SESEAIL--QIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTL 376

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH   A+ ++ P   +                                           +
Sbjct: 377  LHELYARGFLFPPTVS-------------------------------------------R 393

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPDG------ 937
            R   Y+GGLVL P+ G Y+  +LLLDFNSLYPSIIQE+N+CF+T+   +RS  G      
Sbjct: 394  REVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVCFSTIGMFDRSISGNMSSEQ 453

Query: 938  LVPHLPSSKTT--GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSM 994
            LV     +K +  G LP +L+  V+RR+ VK  +K   +  + + LDI+Q+ALKLTANS+
Sbjct: 454  LVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGGTPEETKALDIRQKALKLTANSI 513

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI--- 1051
            YGCLGF  SRF    +A  IT +GR++L     + +    + +IYGDTDS+M+H+G+   
Sbjct: 514  YGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEGECGVRIIYGDTDSVMVHTGLAGK 573

Query: 1052 -DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
              +  KA  ++ ++   +N +YK +EI++D ++K++LL KKK+YA + +   DG     I
Sbjct: 574  KSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLLLYKKKRYAGLYMT-DDGKGR--I 630

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED----------------------VVE 1148
            E KGLD+VR+D+  +S+++    L  +L++  CED                      + E
Sbjct: 631  EYKGLDLVRKDFCEVSRKICRIVLELLLAD--CEDPETYRRFYEGEPKMVLNDGSIKIRE 688

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            ++++ L KV  D+    +   ++VI  TL+K PE+Y      PHV +ALRLK+ G     
Sbjct: 689  AVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYDACAALPHVSLALRLKERGMKF-- 744

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD V Y+I             I +RA HPDE       + ID  YY S QI P + R+
Sbjct: 745  EQGDVVCYVI-----GKGDPGQAIHKRAYHPDE------DFAIDYGYYISSQILPPLLRV 793

Query: 1269 CASIEGTSPERLADCLGLD 1287
               ++G    ++    G++
Sbjct: 794  VGIVKGFHAGKIGKIFGVE 812


>gi|449329080|gb|AGE95354.1| DNA-directed DNA polymerase alpha [Encephalitozoon cuniculi]
          Length = 956

 Score =  270 bits (691), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 243/859 (28%), Positives = 389/859 (45%), Gaps = 218/859 (25%)

Query: 481  NFCSLLGTHSSAL--------ELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
            +F S    HS A+        E  +V RK++GP  + ++ +S  P+ Q       EI V 
Sbjct: 125  SFDSFFSDHSEAIITEFANPIENIIVSRKLRGPCVIKVNGYSG-PSSQ-------EIVVK 176

Query: 533  SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
            SP  +    +SK    +P +T+ +                                 LA 
Sbjct: 177  SPSMVHFVCNSK----LPKLTLGS---------------------------------LAI 199

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATD-RNSKAGSNVLCCESSERALLNRLMIEL 651
            E+ + G+L +   VR    G    G  + A    N++A        S+  AL + L   +
Sbjct: 200  EFSRAGILKYSLYVR----GAHRCGAVRSAVQGENAEAEGMGYVLHSTPDALASHLNAAM 255

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
                 D +V HN+                 PS +  K+                      
Sbjct: 256  ASEGIDCIVYHNL-----------------PSLILRKLE--------------------- 277

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD-----RKEVGPHDVLKMF 766
                   I+G + CD F  +   ++   +S+ +L+ T LN +     +K   P D    +
Sbjct: 278  -------ISGMVRCDLFTFASGNIKGCDFSVEELS-TALNLEVSLELKKGREPSDSRLGY 329

Query: 767  QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            Q    L  LI   E++A L  ++      L L+++++ +SG +  +TLQ  RA+R+EY L
Sbjct: 330  Q----LRRLI--SESEAIL--QIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTL 381

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            LH   A+ ++ P   +                                           +
Sbjct: 382  LHELYARGFLFPPTVS-------------------------------------------R 398

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPDG------ 937
            R   Y+GGLVL P+ G Y+  +LLLDFNSLYPSIIQE+N+CF+T+   +RS  G      
Sbjct: 399  REVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVCFSTIGMFDRSISGNMSSEQ 458

Query: 938  LVPHLPSSKTT--GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSM 994
            LV     +K +  G LP +L+  V+RR+ VK  +K   +  + + LDI+Q+ALKLTANS+
Sbjct: 459  LVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGRTPEETKALDIRQKALKLTANSI 518

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI--- 1051
            YGCLGF  SRF    +A  IT +GR++L     + +    + +IYGDTDS+M+H+G+   
Sbjct: 519  YGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEGECGVRIIYGDTDSVMVHTGLAGK 578

Query: 1052 -DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
              +  KA  ++ ++   +N +YK +EI++D ++K++LL KKK+YA + +   DG     I
Sbjct: 579  KSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLLLYKKKRYAGLYMT-DDGKGR--I 635

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED----------------------VVE 1148
            E KGLD+VR+D+  +S+++    L  +L++  CED                      + E
Sbjct: 636  EYKGLDLVRKDFCEVSRKICRIVLELLLAD--CEDPETYRRFYEGEPKMVLNDGSIKIRE 693

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
            ++++ L KV  D+    +   ++VI  TL+K PE+Y      PHV +ALRLK+ G     
Sbjct: 694  AVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYDACAALPHVSLALRLKERGMKF-- 749

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD V Y+I             I +RA HPDE       + ID  YY S QI P + R+
Sbjct: 750  EQGDVVCYVI-----GKGDPGQAIHKRAYHPDE------DFAIDYGYYISSQILPPLLRV 798

Query: 1269 CASIEGTSPERLADCLGLD 1287
               ++G    ++    G++
Sbjct: 799  VGIVKGFHAGKIGKIFGVE 817


>gi|156094533|ref|XP_001613303.1| DNA polymerase alpha [Plasmodium vivax Sal-1]
 gi|148802177|gb|EDL43576.1| DNA polymerase alpha, putative [Plasmodium vivax]
          Length = 1707

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 226/762 (29%), Positives = 337/762 (44%), Gaps = 166/762 (21%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L ++  TR LT +SG LW ++L    ++R+EY LLH +  KK+I P          + K+
Sbjct: 871  LQIIEKTRDLTKLSGYLWARSLLCYTSERIEYFLLHEYNRKKFITP----------VVKK 920

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            R         V+++ +E              K K    Y+GGLVLEP  G YD ++L LD
Sbjct: 921  R---------VKKIDSEQV------------KNKAAAKYSGGLVLEPLCGYYDTFVLYLD 959

Query: 913  FNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG------- 949
            FNSLYPSII EYN+CF+T+                E +  G   +L  +   G       
Sbjct: 960  FNSLYPSIIIEYNVCFSTLKGRGEAANLGEAANLGEAANRGEAANLGEAANLGEAANLGA 1019

Query: 950  -------------------------------VLPELLKNLVQRRRMVKTWMKTASGL-KI 977
                                           +LP +LKNLV++R  +K  +       K 
Sbjct: 1020 ISTELGDAEADAAVALSEAVEVDDFDRTKPGILPSILKNLVEKRAFIKKLIANEKNKEKK 1079

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
            + L IQ  ++KL +NS+YGCLG SN+RFYAK +A  IT +GR +L+ T   V+   NL+V
Sbjct: 1080 ELLLIQSLSIKLISNSIYGCLGNSNNRFYAKHMAAFITLKGRNLLQHTKSRVEREFNLKV 1139

Query: 1038 IYGDTDSIMIHSGI-----DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKK 1092
            IYGDTDSIMI +GI      +  +A  +A  +   +NK YK LE+DL+ ++ ++LLLKKK
Sbjct: 1140 IYGDTDSIMIDTGIKAQGGSNYKEAFRLAHVIKNTINKSYKRLELDLECIFSKLLLLKKK 1199

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE-------- 1144
            KYA  KV     M     E KG++ ++RD+S +SK +G+  L  I S +  +        
Sbjct: 1200 KYACAKV-VDANMERCEYEMKGINFIKRDFSRISKLIGNEVLKIIFSSKDGQAVGGGGGA 1258

Query: 1145 ------------DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
                        D+ E IH  L  V + + + +  L+ + ITK LTK    Y +  +  H
Sbjct: 1259 GSAGSADPPVENDLSEQIHEYLRGVHQRILADEFDLDFFTITKKLTKNVSEYQEKNSLGH 1318

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS-----------SGSSVGIAQRARHPDE 1241
            V VA R+ + GY+   S    + Y +C  +              S S    +    H   
Sbjct: 1319 VLVAERMMKDGYNI--SVNKEIQYCVCTSEDACRFFNKPGHEKLSNSLCCFSLSEIHKHN 1376

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL-DPSKFQSKPSETMS 1300
            L+       +D DYY   QI   ++RLC  IEGTS E+LA C  + D  + ++      +
Sbjct: 1377 LR-------VDKDYYIRNQILSPINRLCQYIEGTSAEKLASCFNIYDVREIKTDLQIEEN 1429

Query: 1301 SDPSSSLLFAVGDEERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN 1359
               ++ L      EER++       L+C  CS     PA+                    
Sbjct: 1430 YQEANVLSLLNESEERFKDIHLKGYLTCSYCSHNVK-PAI-------------------- 1468

Query: 1360 FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL 1419
            F +  RC  C        +S   I N +        + +YK L +C   +C   T     
Sbjct: 1469 FIKYFRCNNCLR-----YLSIEQIRNYIFSFLHHLFATFYKQLYVC--SSCMVKT----R 1517

Query: 1420 RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL 1461
            R++ +  +    PN     G L    ++  +Y  L YF  LL
Sbjct: 1518 RVLLNGAKDCPSPNCESPKGSLKPLVSKKYIYLMLEYFLFLL 1559



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 65/110 (59%)

Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
           SE+ LL+  + +L  LD+D+ +G+NI  FDL+ ++HR  V  + +   S+  +LK+++  
Sbjct: 657 SEKNLLDAFLQKLKTLDTDIYIGYNILNFDLEFVIHRCNVHNLNADFLSRKKKLKKNDKM 716

Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
           K+ K      +G+   I+  I GRL+ D ++  +DL++  SY + ++  +
Sbjct: 717 KVNKFNGTSSTGSMYNIIQNIKGRLIVDIYMLCKDLIKLTSYGMDEIVDS 766


>gi|303389355|ref|XP_003072910.1| DNA-directed DNA polymerase alpha [Encephalitozoon intestinalis ATCC
            50506]
 gi|303302053|gb|ADM11550.1| DNA-directed DNA polymerase alpha [Encephalitozoon intestinalis ATCC
            50506]
          Length = 953

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 318/619 (51%), Gaps = 123/619 (19%)

Query: 719  IAGRLLCDTFLCSRDLLREVSYSLTQLAKT---QLNKDRKEVGPH---DVLKMFQTL--- 769
            I+G + CD F+ +   ++   +S+ +L  T   ++  + KE+  H       +F+TL   
Sbjct: 273  ISGMVRCDLFVFASGSIKGCDFSIGELLGTLNLEVPGELKEIQEHTDGQPKNLFKTLALE 332

Query: 770  -ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             ++++E+ E  E               L L++++  ISG +  +TLQ  RA+R+EY LLH
Sbjct: 333  SKAILEIFEATEA--------------LHLSKEMCEISGYILNRTLQNLRAERIEYTLLH 378

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                + Y+ P   +                                           +R 
Sbjct: 379  ELYNRGYLFPSSVS-------------------------------------------RRE 395

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---------ERSPDGLV 939
              Y GGLVL P+ G Y+  +LLLDFNSLYPSIIQE+N+CF+T+         + SP+ L 
Sbjct: 396  VKYTGGLVLSPQAGFYEDLVLLLDFNSLYPSIIQEFNVCFSTIGMFDKSVSGDMSPEKLA 455

Query: 940  PHLPSSKTT--GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYG 996
                 S+ +  G LP++L+  V RR+ +K  MK + +  + + LDI+Q+ALKLTANS+YG
Sbjct: 456  VLTEKSRMSERGFLPKILEGFVGRRKAIKDLMKQSRTPEEAKALDIRQKALKLTANSIYG 515

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI----D 1052
            CLGF+ SRF    +A  IT +GR++L     + +    + +IYGDTDS+M+++G+     
Sbjct: 516  CLGFTGSRFCNYTMAAYITNKGRDLLLEAKRIAEEECGMRIIYGDTDSVMVYTGLCGEKS 575

Query: 1053 DIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER 1112
            +  +A  ++ K+   +N K++ +EI++D ++K++LL KKKKY  + +  +DG  Y  +E 
Sbjct: 576  NYKRALEMSRKLRDTINSKHQKIEIEVDKVFKKLLLYKKKKYGGLYMD-EDGKTY--VEY 632

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILS--------ERSCED--------------VVESI 1150
            KGLD+VR+D+  +S+++    L  +L+        ER  +D              ++E++
Sbjct: 633  KGLDLVRKDFCEVSRKICKIVLELLLADSEDPMVYERFYKDKGEAKTILNNGNTKIIEAV 692

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
            ++ L  +  ++ S  +  +++VI  TL+K PE+Y  +   PHV +ALRLK+SG       
Sbjct: 693  YDELKNLSSNLES--IPSKEFVIHNTLSKAPESYDPSVGLPHVSLALRLKESGMKF--DQ 748

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V Y+I             + +RA H  E       + ID  YY S QI P + R+  
Sbjct: 749  GDVVCYVI-----GKGDLREAVHKRAYHLSE------SFTIDYGYYVSNQILPPLLRIVG 797

Query: 1271 SIEGTSPERLADCLGLDPS 1289
             ++G  PE++    G++ +
Sbjct: 798  VVKGFHPEKIGKIFGVEKA 816


>gi|82704805|ref|XP_726706.1| DNA polymerase alpha [Plasmodium yoelii yoelii 17XNL]
 gi|23482227|gb|EAA18271.1| DNA polymerase alpha-related [Plasmodium yoelii yoelii]
          Length = 906

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 230/755 (30%), Positives = 346/755 (45%), Gaps = 167/755 (22%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L ++  +R LT +SG +W ++L    ++ VEY LLH +  KKYI P          +AK+
Sbjct: 49   LQLVEKSRDLTKLSGYIWARSLLSYTSECVEYFLLHEYHKKKYITP---------LVAKK 99

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            +    +E                    ND  K K    Y GGLVLEP  G YD Y+L LD
Sbjct: 100  KP--KIE--------------------NDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLD 137

Query: 913  FNSLYPSIIQEYNICFTTV------------------ERSPDGLVPHLPSSKTT------ 948
            FNSLYPSII EYNICF+T                   E     ++ +  S          
Sbjct: 138  FNSLYPSIIIEYNICFSTFNMKNYLALSGSTSEEIQEETGKRNIIDYNDSDVNNLDKDDQ 197

Query: 949  ---------------GVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTAN 992
                           G+LP +LK LV++R  +K  + +     K + L +Q  ++KL +N
Sbjct: 198  VGDISNIDYFDKTKPGILPSILKQLVEKRAFIKKLIASEKNKEKKELLLVQSLSIKLISN 257

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI- 1051
            S+YGCLG +++RFYAK +A  ITQ+GR +L+ T   V+   NL+V+YGDTDSIMI +GI 
Sbjct: 258  SIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEFNLKVVYGDTDSIMIDTGIK 317

Query: 1052 ----DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
                ++  ++  +A  +   +NK YK LE+DL+ ++ ++LLLKKKKYA  KV   +   Y
Sbjct: 318  SSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDPNLGKY 377

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE---------------------DV 1146
            E  E KG++ ++RD+  +SK +G+  L  I S +  +                     D+
Sbjct: 378  EY-EMKGINFIKRDFCKISKLIGNEMLRIIFSNKEYKPSQPNSSNTSLSHTDDLSIQNDL 436

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
             E IH  L  V + +++ +  LE YVITK LTK    Y +  +  HV VA R+ + GY+ 
Sbjct: 437  SEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTKNVNEYQEKNSLGHVLVAERMIKDGYNV 496

Query: 1207 GCSAGDTVPYIIC------------CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
                   + Y +C             E+  SS     I+       E+KK + K  ID D
Sbjct: 497  --CVNKEIQYCVCRNEDALKFYNKGNEKLNSSLCCFSIS-------EIKKYNLK--IDKD 545

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGD- 1313
            YY   QI   ++RLC  IEGT+ E+++ C  +   K      +   S   +++L  + + 
Sbjct: 546  YYIRNQILLPINRLCQYIEGTNIEKISSCFNIYNVKEIKSDEQIDESYLETNVLSLLSET 605

Query: 1314 EERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEE 1372
            EER++       L+C +C      P +                    F +  RC KC   
Sbjct: 606  EERFKNINLKGFLNCDNCHHDVK-PVI--------------------FIKYFRCNKCFSL 644

Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCP 1432
            +   +I      N +    +   S +YK + +C+       +C L  R I   E    CP
Sbjct: 645  LPIDKIR-----NYIFSFINHLCSTFYKQMYICN-------SCLLKTRRIFLKESNN-CP 691

Query: 1433 NYPRCNGR------LVRKYTEADLYKQLTYFCHLL 1461
            N    N +      L +KY    +Y  L YF +LL
Sbjct: 692  NLNCDNPKNSLKPILSKKY----IYSILEYFLYLL 722


>gi|401826411|ref|XP_003887299.1| DNA polymerase type-B alpha subfamily catalytic domain-containing
            protein [Encephalitozoon hellem ATCC 50504]
 gi|392998458|gb|AFM98318.1| DNA polymerase type-B alpha subfamily catalytic domain-containing
            protein [Encephalitozoon hellem ATCC 50504]
          Length = 938

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 197/606 (32%), Positives = 313/606 (51%), Gaps = 107/606 (17%)

Query: 719  IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEY 778
            I+G + CD F  +   ++   +SL +L+ T LN +  E      ++   + E L      
Sbjct: 264  ISGMVRCDLFAFASGNIKGCDFSLEELSST-LNLEVAEKLRRKQVQYENSFERLAV---- 318

Query: 779  GETDAWLSMELMFHLS-VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
             E++A   +  +F  +  L L+++++ +SG +  + LQ  RA+R+EY LLH   A+ Y+ 
Sbjct: 319  -ESEA---IHRIFQATEALDLSKEMSEVSGYILNRALQNLRAERIEYTLLHELYARGYLF 374

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            P   T  KE K                                          Y GGLVL
Sbjct: 375  P-CITGRKEVK------------------------------------------YTGGLVL 391

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---------ERSPDGLVPHLPSSKTT 948
             P+ G Y+  +LLLDFNSLYPSIIQE+N+CF+TV         + S + L      S+  
Sbjct: 392  SPQAGFYEDLVLLLDFNSLYPSIIQEFNVCFSTVGMFNGRISGDMSAEQLEMLTEKSRIA 451

Query: 949  --GVLPELLKNLVQRRRMVKTWMKTASGLK-IQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G LP++L+  V RR+ VK  MK + G +  + L+I+Q+ALKLTANS+YGCLGF+ SRF
Sbjct: 452  ERGFLPKVLEGFVGRRKAVKDLMKQSKGKEETRVLEIRQRALKLTANSIYGCLGFAGSRF 511

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI----DDIAKAKAIA 1061
                +A  IT +GR++L     + +    + +IYGDTDS+M+H+G+     +  KA  ++
Sbjct: 512  CNYTMAAYITNKGRDLLLEAKRIAEGECGMRIIYGDTDSVMVHTGLRGEMSNYKKALEMS 571

Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
             K+ + +N +Y  +EI++D ++K++LL KKKKYA + V  +DG     IE KGLD+VR+D
Sbjct: 572  RKLREAINSRYVKIEIEVDKVFKKLLLYKKKKYAGLYVG-EDGR--SGIEYKGLDLVRKD 628

Query: 1122 WSLLSKEVGDFCLSQILSE----------------RSCED----VVESIHNSLMKVQEDM 1161
            +   S+ +    L  +L++                +   D    + E++H+ L K++ D+
Sbjct: 629  FCEASRRICRVVLELLLTDPEDPEAYEVFYKDEPKKDLNDGNSKIREAVHDELRKLRSDL 688

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
                +  + +VI  TL+K PE Y  +   PHV +ALRLK++G       GD V Y+I   
Sbjct: 689  EG--LPAKDFVIHNTLSKAPENYGPSATLPHVSLALRLKEAGMKF--DQGDVVCYVI--- 741

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
             G  S     I +RA H +E       ++ID +YY S QI P + R+   ++G   E++ 
Sbjct: 742  -GRGSPGE-AIHKRAYHLNE------DFVIDYEYYISNQILPPLLRIVGIVKGFHAEKIG 793

Query: 1282 DCLGLD 1287
               G++
Sbjct: 794  RIFGVE 799


>gi|67602945|ref|XP_666513.1| DNA polymerase alpha, DNAPol alpha [Cryptosporidium hominis TU502]
 gi|54657528|gb|EAL36288.1| DNA polymerase alpha, DNAPol alpha [Cryptosporidium hominis]
          Length = 556

 Score =  246 bits (627), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/337 (43%), Positives = 208/337 (61%), Gaps = 28/337 (8%)

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            +SG +  QL+I+Q ALKLTANS+YGCLG+ NSRFYAK LA +IT  GR+IL+ T   V+ 
Sbjct: 2    SSGTRKSQLEIRQLALKLTANSLYGCLGYKNSRFYAKDLASIITFYGRQILQKTKLKVEE 61

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKA------IAGKVIQEVNKKYKCLEIDLDGLYKR 1085
               L+VIYGDTDSIM+++ I D    +       +A ++ Q VNK Y  LE+DLDG+ +R
Sbjct: 62   ETKLQVIYGDTDSIMVNTNIFDDGNGEGYSHVLKLASQIKQIVNKDYTKLELDLDGVLQR 121

Query: 1086 MLLLKKKKYAAVKV------QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            +LLLKKKKYA +++      Q K       +E KGLD+VRRDWS+L++ V    L+ + S
Sbjct: 122  LLLLKKKKYACIQIVDFHRKQLK-------LECKGLDLVRRDWSILTRNVSTQLLNSLFS 174

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
                + V+ +I N+L  + E + S  + LE ++ITKTLTK P+ Y D    PHV VA R+
Sbjct: 175  NEPIDTVITNILNTLESLNEALNSNSIPLESFIITKTLTKLPQFYSDPYLLPHVIVAKRM 234

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG-----IAQRARHPDELKKGDGKWMIDID 1254
              SG     S+G  +PYIIC E  + S   V      +++RA  P+E+K       IDI+
Sbjct: 235  ISSGLPV--SSGTEIPYIICKEVNSQSSEEVAPKSSILSKRAYSPEEVKSNGLN--IDIE 290

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF 1291
            +Y +QQ+ P +SRLCA I G    R+  CLGL+  ++
Sbjct: 291  WYKTQQLLPPLSRLCAPIPGLEISRIGQCLGLEYKQY 327


>gi|253743796|gb|EET00097.1| DNA polymerase alpha subunit A [Giardia intestinalis ATCC 50581]
          Length = 1728

 Score =  246 bits (627), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 230/804 (28%), Positives = 372/804 (46%), Gaps = 151/804 (18%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  L   L   L + + D+++GHN+  F L   +  A+ C    S  + I        P+
Sbjct: 738  ELQLYEELSRILMQFNPDIIMGHNLY-FHLYNAMWHARSCLTMDSFKNTILVGFSRLSPR 796

Query: 700  LRKGRTIFGSGASPG----IMSCIAGRLLCD-----TFLCSRDLLREVSYSLTQLAKTQL 750
            + +   +F +  +      +M+ I GRLL D     +   +   L  + Y+ + L K  L
Sbjct: 797  ILRIENLFKTFQTTRSNWYVMNAIHGRLLMDLEKGISEFSTDTKLTTIDYAASSLLKKDL 856

Query: 751  ------NKDRK-EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
                  N   K +VG H     F+T + + ELI   E  A + +     L+ +PLT +++
Sbjct: 857  VLTPASNLGSKLKVGTH-----FKT-QVVPELI--AEILALIGVANA--LNFIPLTCRIS 906

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++   W       RA+R E L+L+ F A  YI+PD    + E     +   H  +D   
Sbjct: 907  QLTALPWQLVCSIGRAKRAESLILYNFFAMPYIIPDIEYKIYEQNTGGRDEIHKAKD--- 963

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                  DAN D         +G+ G  Y GG V++P  G +DK +++LDFNSLYP+II+E
Sbjct: 964  ------DANTDVV------EEGRHGVGYEGGYVMDPVTGFHDKIVIVLDFNSLYPNIIRE 1011

Query: 924  YNICFTTVERSPDGLVP---------------HLPSS-------------------KTTG 949
            Y++CFTT++  P   +P               HL S                      T 
Sbjct: 1012 YSLCFTTLD--PKNYIPGINPANINDSSPSLSHLQSDLQDSWTQAIEEEIHISKQINHTV 1069

Query: 950  VLPELLKNLVQRRRMVKTWMKTASGLKIQ----------QLDIQQQALKLTANSMYGCLG 999
            +LP ++  L+ +R+ +KT +K    ++++           LDI Q A+KL AN+MYG LG
Sbjct: 1070 ILPRIIARLIIQRQTIKTKIKDLEAMQVEDDKTLNQRLKMLDISQLAIKLCANAMYGSLG 1129

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD------ 1053
            +   RFY   +A  I  +GR  L    ++ +     +VIYGDTDSIMI + ++       
Sbjct: 1130 YQYGRFYCPHVAARIPARGRLELTRASNIAKQQ-GFQVIYGDTDSIMIKTNLEYSKPEKH 1188

Query: 1054 --IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV-I 1110
              +A+ K IA  +   V +  K L++ LD ++ + LLL+KKKYAA ++ F D   + V +
Sbjct: 1189 KIMAQVKTIATTISSRVGEDRKYLQLGLDYIFIKYLLLQKKKYAATRL-FPD---FSVAL 1244

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES-IHNSLMKVQEDMRSGQVALE 1169
            E KGLD+VRRDW L+S+ +    L  I+     ++VV S + + L+   +D+ + +   +
Sbjct: 1245 EYKGLDLVRRDWCLISRNISKKALEIIMGYP--QNVVASNLLSMLVASYKDILASRTPSQ 1302

Query: 1170 --KYV----ITKTLTKPPEAYPD--AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
              KYV    +TK+LTK    Y D  A   PHV VA  +++ G       GD + Y++   
Sbjct: 1303 ELKYVQHFKMTKSLTKQLHQYSDTAATQLPHVFVAKEMQRVG--KAVRVGDIIEYLVLST 1360

Query: 1222 QG-------------------------TSSGSSVGIAQRA----RHPDELKKGDGKWMID 1252
            +G                         TS+  S  IA+R+     +   L       ++D
Sbjct: 1361 KGISALQAKMSKDSKQAVSNDTSDMKQTSTNPSGDIAKRSIPFEYYSQYLSACPLVNVLD 1420

Query: 1253 IDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL---LF 1309
            I++Y   QI P + R+C+ +   S  +LA+C GLD   +    ++T+S D   S     +
Sbjct: 1421 IEWYIKNQIIPPLQRVCSYVPDLSAGQLAECFGLDSRDYI---TDTISEDQIISFNRREY 1477

Query: 1310 AVGDEERYRGCEPLILSCPSCSST 1333
            ++    RY  C   I  C +C S+
Sbjct: 1478 SIDVRRRYGSCCCFIYHC-TCGSS 1500



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)

Query: 367 HSCCVVVKNMQRCVYAIPNGPL-------FQTDEIMKL---------------EKD--AE 402
            S CVVVK ++R  Y +P  P+          DEI  L               E D    
Sbjct: 352 QSACVVVKGLRRIFYILPRDPIETCDTENMSPDEINVLFERVFTKAPDPTYTDEVDYICL 411

Query: 403 ESRISPMAFRKKLQDVA-----LGLKTEIAN--QLLNLNVSNYIVSPVKRRYAFGQAEIP 455
           +  I P   ++   D+      L LK +I    Q   +N +  I+ PV RRY F +  +P
Sbjct: 412 DQAILPDNEQRNQADIVNISVFLKLKADILGVLQRHGINPNTVIIRPVWRRYVFNERALP 471

Query: 456 AGENYVLKINYPFKDPPLPADLKGENFC---------------------SLLGTHSSALE 494
                 +++ YP   PP+   + G                         +++G   S LE
Sbjct: 472 RHPRIWIEVTYPASKPPVSPLIFGPKVLGVRKDVSDISLANLQPDIGIEAVVGHTISPLE 531

Query: 495 LFLVKRKVKGPSWLSIS 511
            +L K ++ GP WL I+
Sbjct: 532 YWLAKTRISGPMWLHIT 548


>gi|68072149|ref|XP_677988.1| DNA polymerase alpha [Plasmodium berghei strain ANKA]
 gi|56498307|emb|CAH97899.1| DNA polymerase alpha, putative [Plasmodium berghei]
          Length = 827

 Score =  244 bits (622), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 218/725 (30%), Positives = 330/725 (45%), Gaps = 164/725 (22%)

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            +EY LLH +  KKYI P          ++K++       + +E               ND
Sbjct: 6    IEYFLLHEYHKKKYITP---------LVSKKK-------QKIE---------------ND 34

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
              K K    Y GGLVLEP  G YD Y+L LDFNSLYPSII EYNICF+T       +  +
Sbjct: 35   TNKSKNTAKYLGGLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFSTF-----NMKHY 89

Query: 942  LPSSKTT---------------------------------------------GVLPELLK 956
            L SS +T                                             G+LP +LK
Sbjct: 90   LASSASTSEEIQEDIEKKNIVYYNDSDINQLDNIDEQVGDLSNIDYFDKTKPGILPSILK 149

Query: 957  NLVQRRRMVKTWMKTASGLKIQQLDI-QQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
             LV++R  +K  + +    + ++L I Q  ++KL +NS+YGCLG +++RFYAK +A  IT
Sbjct: 150  QLVEKRAFIKKLIASEKNKEKKELLIVQSLSIKLISNSIYGCLGNTHNRFYAKYIASYIT 209

Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI-----DDIAKAKAIAGKVIQEVNK 1070
            Q+GR +L+ T   V+   NL+V+YGDTDSIMI +GI     ++  ++  +A  +   +NK
Sbjct: 210  QKGRNLLQHTKFKVEKEFNLKVVYGDTDSIMIDTGIKSSDANNYKESLKLAHTIKNNINK 269

Query: 1071 KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
             YK LE+DL+ ++ ++LLLKKKKYA  KV   +   YE  E KG++ ++RD+  +SK +G
Sbjct: 270  NYKKLELDLECIFSKLLLLKKKKYACAKVIDPNLGKYEY-EMKGINFIKRDFCKISKLIG 328

Query: 1131 DFCLSQILSERSCE---------------------DVVESIHNSLMKVQEDMRSGQVALE 1169
            +  L  I S +  +                     D+ E IH  L  V + +++ +  LE
Sbjct: 329  NELLRIIFSNKEYKPSQPNSSNISLNHSDDISIQNDLSEQIHEYLRSVYQRIQNDEFDLE 388

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
             YVITK LTK    Y +  +  HV VA R+ + GY+        + Y +C  +      +
Sbjct: 389  HYVITKKLTKNVNEYQEKNSLGHVLVAERMIKDGYNV--CVNKEIQYCVCRNEDALKFYN 446

Query: 1230 VGIAQR-----ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
             G  +           E+KK + K  ID DYY   QI   ++RLC  IEGT+ E+++ C 
Sbjct: 447  KGNEKLNSSLCCFSVGEIKKYNLK--IDKDYYIRNQILLPINRLCQYIEGTNVEKISSCF 504

Query: 1285 GLDPSKFQSKPSETMSSDPSSSLLFAVGD-EERYRGCE-PLILSCPSCSSTFDCPAVCSS 1342
             +   K      +   S   +++L  + + EER++       L+C  C      P +   
Sbjct: 505  NIYNVKEIRTDEQIDESYLETNVLSLLSETEERFKNIHLKGFLNCDKCHHNIK-PVI--- 560

Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
                             F +  RC KC        ++   I N +    +   S +YK +
Sbjct: 561  -----------------FIKYFRCNKC-----FSLLAIEQIRNYIFSFINHLCSTFYKQM 598

Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGR------LVRKYTEADLYKQLTY 1456
             +C+       +C L  + I   +    CPN    N +      L +KY    +Y  L Y
Sbjct: 599  YICN-------SCLLKTKRIFLKDSNN-CPNLNCDNPKNSLKPILSKKY----IYSILEY 646

Query: 1457 FCHLL 1461
            F HLL
Sbjct: 647  FLHLL 651


>gi|396081416|gb|AFN83033.1| DNA-directed DNA polymerase alpha [Encephalitozoon romaleae SJ-2008]
          Length = 947

 Score =  243 bits (621), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 172/528 (32%), Positives = 272/528 (51%), Gaps = 97/528 (18%)

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            L L+++++ ISG +  + LQ  RA+R+EY LLH    + Y+ P                 
Sbjct: 342  LDLSKEMSEISGYILNRALQNLRAERIEYTLLHELYERGYLFP----------------- 384

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                          +R   Y GGLVL P+ G Y+  +LLLDFNS
Sbjct: 385  --------------------------CVASRREVKYTGGLVLSPQVGFYEDLVLLLDFNS 418

Query: 916  LYPSIIQEYNICFTTV-------ERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRM 964
            LYPSIIQE+N+CF+T+           DG    ++     S   G LP++L+  V RR+ 
Sbjct: 419  LYPSIIQEFNVCFSTIGMFNGRISGDMDGEKLEMLTEKSRSSGRGFLPKILEGFVGRRKA 478

Query: 965  VKTWMKTASGLK-IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
            VK  MK   G + I+ L+I+Q+ALKLTANS+YGCLGF+ SRF    +A  IT +GR++L 
Sbjct: 479  VKDLMKRCKGKEEIKVLEIRQRALKLTANSIYGCLGFAGSRFCNYTMAAYITNKGRDLLL 538

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGI----DDIAKAKAIAGKVIQEVNKKYKCLEIDL 1079
                + +    +++IYGDTDS+M+H+G+     +  KA  ++ ++   +N +YK +EI++
Sbjct: 539  EAKRIAEEGCGMKIIYGDTDSVMVHTGLGGEMSNYKKALEMSVRLKDAINSRYKKIEIEV 598

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            D ++K++LL KKKKYA + +  ++G     IE KGLD+VR+D+   S+ V    L  +L+
Sbjct: 599  DKVFKKLLLYKKKKYAGLYIT-EEGK--SSIEYKGLDLVRKDFCEASRRVCRSVLELLLT 655

Query: 1140 E--------RSCED------------VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            +        R  ED            +  ++++ L K+  ++    +  + +VI  TL+K
Sbjct: 656  DFEDPRTYARFYEDEPKRVLNDGNSKIRRAVYDELKKLSSNLEG--LPTKDFVIYNTLSK 713

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
             PE Y  +   PHV +ALRLK++G       GD   Y+I        G +    +RA H 
Sbjct: 714  APENYDPSVALPHVSLALRLKEAGMKF--DQGDVACYVI-----GKGGPNEAPHKRAYHL 766

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
            +E       + ID +YY S QI P + R+   ++G   E++    G++
Sbjct: 767  NE------DFAIDYEYYISNQILPPLLRIVGIVKGFHGEKIGRIFGVE 808


>gi|300709156|ref|XP_002996745.1| hypothetical protein NCER_100120 [Nosema ceranae BRL01]
 gi|239606068|gb|EEQ83074.1| hypothetical protein NCER_100120 [Nosema ceranae BRL01]
          Length = 866

 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 254/508 (50%), Gaps = 82/508 (16%)

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
             +L     VL L+++L+ +SG    K L   RA+ +EY L H    KKY++P        
Sbjct: 299  FDLFIKSDVLILSKELSELSGYTINKVLNNNRAEIIEYTLFHELYDKKYLLP-------- 350

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                    N  VE                               Y GG V EP KG YD 
Sbjct: 351  -----PEVNVSVE------------------------------KYEGGKVFEPVKGYYDN 375

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
             +LLLDFNSLYPSIIQEYN+CF+    +PD       +S   GVLP++L NLVQRR+ VK
Sbjct: 376  LVLLLDFNSLYPSIIQEYNVCFS----NPDF------NSSEKGVLPKILANLVQRRKEVK 425

Query: 967  TWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
              M      KI    I+Q ALK+ ANS+YG LG+  SRF    +A  IT++GREILR T 
Sbjct: 426  KLMNNDKDNKIYY--IRQMALKILANSIYGSLGYPKSRFCNYKMAAFITEKGREILRDTK 483

Query: 1027 DLVQNNLNLEVIYGDTDSIMIHSGI----DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
              ++N LN +VIYGDTDSIMI +G+    ++I KAK I+ ++ +++N KYK +EI+L+ +
Sbjct: 484  KTIENELNYKVIYGDTDSIMIDTGLIHNEENIIKAKEISQEISEKINLKYKNIEIELEKI 543

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            + ++ L  KK+Y     ++ D       E KG++ ++R++   + ++  + +++IL +  
Sbjct: 544  FTKLFLYAKKRYIG---RYLDSNSVLHEEYKGIEALKRNFCPAASDIL-YKVNKILLDSD 599

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             +++      SL+K + +    +  +E +VI  TL KP   Y      P V +  RLK  
Sbjct: 600  NKNIY-----SLLKEEYNNLINR-NVEDFVINNTLNKPLSQYASNAPLPFVHLCNRLKTK 653

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
            G       GD V Y+I    G +   +     RA    E      K  ID DYY   QI 
Sbjct: 654  G--IHYKVGDVVSYVI----GKTENET-DFYNRAFLLTE------KCNIDYDYYVQNQIM 700

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSK 1290
            P + R  A     + E++ D   +  +K
Sbjct: 701  PPLMRSLALSSNINLEKIYDIFKVKYNK 728


>gi|308158226|gb|EFO61009.1| DNA polymerase alpha subunit A [Giardia lamblia P15]
          Length = 1730

 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 234/892 (26%), Positives = 399/892 (44%), Gaps = 158/892 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  L   L   L   + D+++GHNI     + + H        S   + +  L R   P+
Sbjct: 737  ELQLYEELSKVLMHFNPDIIMGHNIYFHLYNAMWHSRSCLTTDSFKNTILAGLSRLN-PR 795

Query: 700  LRKGRTIFGSG----ASPGIMSCIAGRLLCD-----TFLCSRDLLREVSYSLTQLAKTQL 750
            + +  ++F +     +S  +M+ I GRLL D     +   +   L  + Y+ + L K  L
Sbjct: 796  ILRIESLFKTFQTARSSWHVMNTIHGRLLMDLERGISEFSTDTKLTTIDYTASSLLKRDL 855

Query: 751  N-KDRKEVGPH-DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
                   +G    V   F+T + + ELI   E  A + +     L+ +PLT +++ ++  
Sbjct: 856  PITPASHLGSKLKVGAQFKT-QVIPELI--AEVLALIGIANA--LNYIPLTCRISQLTAL 910

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
             W       RA+R E L+L+ F    YI+PD   Y    + AK               ++
Sbjct: 911  PWQLVCSIGRARRAESLILYNFFVMPYILPD-IEYKAHEQGAK---------------SH 954

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
            ++    +DT+ +   + + G  Y GG V++P  G +D+ +++LDFNSLYP+II+EYN+CF
Sbjct: 955  DEVRSKDDTTADVTEEARYGAGYEGGYVMDPVAGFHDRIVIVLDFNSLYPNIIREYNLCF 1014

Query: 929  TTVERSPDGLVPHLPSSKT----------------------------------TGVLPEL 954
            TT++  P   +    S+ T                                  T +LP++
Sbjct: 1015 TTLD--PQNYITGTDSTSTNDGSSSLVHLHADPQDAWNQTIEEEIRISKQISHTVILPKI 1072

Query: 955  LKNLVQRRRMVKTWMKTASGLKIQ----------QLDIQQQALKLTANSMYGCLGFSNSR 1004
            +  L+ +R+ +K  +K    ++++           LDI Q A+KL AN+MYG LG+   R
Sbjct: 1073 IARLITQRQAIKGKIKDLEAMQVKDDKTLNQRLKMLDISQLAIKLCANAMYGSLGYQYGR 1132

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD--------IAK 1056
            FY   +A  I  +GR  L    ++ +     +VIYGDTDSIMI + ++         +A+
Sbjct: 1133 FYCPHVAARIPARGRLELTRASNIAKQQ-GFQVIYGDTDSIMIKTNLEYDKSEKHKIMAQ 1191

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV-IERKGL 1115
             KAIA  +   V +  K L++ LD ++ + LLL+KKKYAA ++ F D   + V +E KGL
Sbjct: 1192 VKAIATTISSRVGEDRKYLQLGLDYIFIKYLLLQKKKYAATRL-FPD---FSVALEYKGL 1247

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES-IHNSLMKVQEDM---RSGQVAL--- 1168
            D+VRRDW  +S+ V    L  I+     ++VV S + N L+   +D+   R+    L   
Sbjct: 1248 DLVRRDWCPISRTVSKRALEIIMGYP--QNVVASNLLNMLVASHKDILAFRTPAYELTYA 1305

Query: 1169 EKYVITKTLTKPPEAY--PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT-- 1224
            +++ +TK+LTK    Y    A   PHV VA+ +++ G       GD + Y++   +G   
Sbjct: 1306 QQFKMTKSLTKQLHQYSATAATQLPHVFVAMEMQRIG--KPVRIGDIIEYLVLSNKGVLA 1363

Query: 1225 -----------------------SSGSSVGIAQRA----RHPDELKKGDGKWMIDIDYYA 1257
                                   S+  S  IA+R+     +   L       ++DI++Y 
Sbjct: 1364 LQVAMGKDGKQATFNDASDLKQASTSPSGDIARRSVPFEYYSQYLSGCPLVNVLDIEWYI 1423

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL---LFAVGDE 1314
              QI P + R+C+ +   S  +LA+C GLD   +    ++T+S +  +      +++   
Sbjct: 1424 KNQIIPPLQRVCSYVPDLSAGQLAECFGLDSRDYI---ADTVSEEQLTGFNRQEYSIEVR 1480

Query: 1315 ERYRGCEPLILSC----PSCSSTFDCPA--VCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
             RY  C   I  C    P   + +  P     SS    V+  P   ET  N +R  +  +
Sbjct: 1481 RRYGSCCCFIYHCACGGPKSVTAWPPPIKDYRSSEDTIVTPHPDL-ETPSNTFRKEKAIQ 1539

Query: 1369 CPEEVEAG----------RISPGMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
              E + +           R++ G   + + +Q    + +Y   L  C  +TC
Sbjct: 1540 SDEPLLSPLDFDVLRCGCRLTLGCFVSSLHKQLAQMLRLYEAQLSYCVHQTC 1591



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 62/204 (30%)

Query: 367 HSCCVVVKNMQRCVYAIPNGP----------------LFQ-----------TDEI----- 394
            S C+VVK ++R  Y +P  P                LF+           TDEI     
Sbjct: 351 QSACIVVKGLRRIFYILPRDPIEICDTKNMTADEINTLFERIFVKAPDPTYTDEIDYICL 410

Query: 395 --MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVS--NYIVSPVKRRYAFG 450
               L  D + +++  +        V L LK +I   L    ++     V PV RRY F 
Sbjct: 411 DQPILPDDTQRNQVDLVNI-----SVFLKLKADILEILQRYGIAPNTVTVRPVWRRYVFN 465

Query: 451 QAEIPAGENYVLKINYPFKDPPLP---------------ADLKGENFCSLLGTHS----- 490
           +  +P      +++ YP   PP+                +D+   N  S +G  +     
Sbjct: 466 ERALPRYPRVWIEVTYPANKPPVSPILFGPQVLGVRKDISDVTTANLQSDIGVEAVVGHT 525

Query: 491 -SALELFLVKRKVKGPSWLSISKF 513
            S LE +L K ++ GP WL +++ 
Sbjct: 526 ISPLEYWLAKTRISGPMWLHVTQI 549


>gi|159108384|ref|XP_001704463.1| DNA polymerase alpha subunit A [Giardia lamblia ATCC 50803]
 gi|157432527|gb|EDO76789.1| DNA polymerase alpha subunit A [Giardia lamblia ATCC 50803]
          Length = 1730

 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 237/891 (26%), Positives = 396/891 (44%), Gaps = 156/891 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  L   L   L   + D+++GHNI     + + H        S   + +  L R   P+
Sbjct: 737  ELQLYEELSKVLMHFNPDIIMGHNIYFHLYNTMWHSRSCLTTDSFKNTILAGLSRLN-PR 795

Query: 700  LRKGRTIF----GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            + +   +F     + +S  +M+ I GRLL D      +   +   +    A + L K   
Sbjct: 796  ILRIENLFKTFQAARSSWHVMNTIHGRLLMDLERGISEFSTDTKLTTIDYAASSLLKRDL 855

Query: 756  EVGPHDVL-------KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
             + P   L         F+T + + ELI   E  A + +     L+ +PLT +++ ++  
Sbjct: 856  TLTPPSHLGSKLKAGAQFKT-QVIPELI--AEILALIGIANA--LNYIPLTCRISQLTAL 910

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
             W       RA+R E L+L+ F    YI+PD      E K  +Q +    E R       
Sbjct: 911  PWQLVCSIGRARRAESLILYNFFVMPYILPDT-----EYKTHEQSAKSHDEFRP------ 959

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
                  +DT+ +   + + G  Y GG V++P  G +DK +++LDFNSLYP+II+EY++CF
Sbjct: 960  -----KDDTAADATEEARHGAGYEGGYVMDPVAGFHDKIVIVLDFNSLYPNIIREYSLCF 1014

Query: 929  TTVERS--------------PDGLVPHLPSS-------------------KTTGVLPELL 955
            TT++                P GL+ HL +                      T +LP+++
Sbjct: 1015 TTLDPQNYVTWPDPTNTTDDPSGLI-HLHADPQDTWNQTIEEEVRASKQISHTVILPKII 1073

Query: 956  KNLVQRRRMVKTWMKTASGLKI----------QQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              L+ +R+ +K  +K    +++          + L+I Q A+KL AN+MYG LG+   RF
Sbjct: 1074 ARLITQRQAIKRKIKDLEAMQVKDDKTISQRLKMLEISQLAIKLCANAMYGSLGYQYGRF 1133

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD--------IAKA 1057
            Y   +A  I  +GR  L    ++ +     +VIYGDTDSIMI + I+         +A+ 
Sbjct: 1134 YCPHVAARIPARGRLELTRASNIAKQQ-GYQVIYGDTDSIMIKTNIEYNKSEKHKIMAQV 1192

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV-IERKGLD 1116
            KAIA  +   V +  K L++ LD ++ + LLL+KKKYAA ++ F D   + V +E KGLD
Sbjct: 1193 KAIATTISSRVGEDRKYLQLGLDYIFIKYLLLQKKKYAATRL-FPD---FSVALEYKGLD 1248

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVES-IHNSLMKVQEDMRSGQVA------LE 1169
            +VRRDW  +S+ +    L  I+     ++V+ S + N L+   +D+ + +         +
Sbjct: 1249 LVRRDWCPISRTISKRALEIIMGYP--QNVIASNLLNMLVASYKDILASRTPARELKYAQ 1306

Query: 1170 KYVITKTLTKPPEAY-PDAKNQ-PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS- 1226
            ++ +TK+LTK    Y   A  Q PHV VA  L++ G       GD + Y++   +G S+ 
Sbjct: 1307 QFKMTKSLTKQLHQYSATAVTQLPHVFVARELQRVG--KPVRIGDIIEYLVLSNKGISAL 1364

Query: 1227 ------------------------GSSVGIAQRA----RHPDELKKGDGKWMIDIDYYAS 1258
                                     SS  IA+R+     +   L       ++DI++Y  
Sbjct: 1365 QVAMGKDSKQAAFNDAPDLKQASVSSSGDIARRSIPFEYYSQYLSGCPLVNVLDIEWYIK 1424

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL---LFAVGDEE 1315
             QI P + R+C+ +   S  +LA+C GLD   +    ++T+S +  +      +++    
Sbjct: 1425 SQIIPPLQRVCSYVPDLSAGQLAECFGLDSRDYI---ADTVSEEQLTGFNRQEYSIEVRR 1481

Query: 1316 RYRGCEPLILSC----PSCSSTFDCPA--VCSSICMSVSEKPSKPETEYNFWR------- 1362
            RY  C   I  C    P   + +  P     SS  + V+  P   ET  N +R       
Sbjct: 1482 RYGSCCCFIYHCACGNPKSVTAWPPPLRDYRSSEEVIVTPHPDL-ETPSNAFRKEKAIQG 1540

Query: 1363 --TLRCPKCPEEVEAG-RISPGMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
               L  P   + +  G R++ G   + + +Q      +Y   L  C  +TC
Sbjct: 1541 DEPLLSPLDFDVLRCGCRLNLGCFVSSLHKQLAQMFRLYEAQLSYCVHQTC 1591



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 74/199 (37%), Gaps = 52/199 (26%)

Query: 367 HSCCVVVKNMQRCVYAIPNGPL-------FQTDEI--------MKLEKDAEESRISPMAF 411
            S CVVVK ++R  Y +P+GP+         +DEI         K+        I  M  
Sbjct: 351 QSACVVVKGLRRIFYILPHGPIENCDTKTMTSDEINALFERVYAKVPDPTYNDEIDYMCL 410

Query: 412 RKKLQ--------------DVALGLKTEIAN--QLLNLNVSNYIVSPVKRRYAFGQAEIP 455
            + +                V L LK +I    Q   +N S   V PV RRY F +  +P
Sbjct: 411 DQPILPDDTQRHQADLVNISVFLKLKADILEVLQKHGINSSTVTVRPVWRRYVFNERTLP 470

Query: 456 AGENYVLKINYPFKDPPLPADLKGENFC---------------------SLLGTHSSALE 494
                 +++ YP   PP+     G                         +++G   S LE
Sbjct: 471 RHPRVWIEVTYPANKPPVSPMFFGPQVLGVRKDVGDAAAANLQFDIGVEAVVGHTISPLE 530

Query: 495 LFLVKRKVKGPSWLSISKF 513
            +L K ++ GP WL +++ 
Sbjct: 531 YWLAKTRISGPMWLHVTQI 549


>gi|387597306|gb|EIJ94926.1| hypothetical protein NEPG_00451 [Nematocida parisii ERTm1]
          Length = 870

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 287/612 (46%), Gaps = 91/612 (14%)

Query: 701  RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL--NKDRKEVG 758
            RK    F +  SP    C    L+CD       + R   Y+L ++ K+    + D    G
Sbjct: 176  RKDSYNFLAAFSP---ICDKISLICDISQYFESVCRLTEYTLEEMCKSYSLEHADIPVCG 232

Query: 759  PHDVLKMFQTL-------ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
              D L+M  +        +S++  +      A     +    ++L L  +L  I+G L  
Sbjct: 233  SADSLQMVYSAIRNGHASDSVLVQLNTARVSAATMHAIFTKGNLLALAEKLAYITGALLN 292

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
                G ++ RVEYLLLH  R  +Y++P K        +  + S                 
Sbjct: 293  PIFHGYKSDRVEYLLLHRMRDNQYLIPRK-------SLGGKIS----------------- 328

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY-DKYILLLDFNSLYPSIIQEYNICFTT 930
              D DT             Y GG V   K G+Y ++YI L DFNSLYPSIIQEYN+CF+T
Sbjct: 329  --DKDT-------------YEGGYVFLDKPGVYSERYIALFDFNSLYPSIIQEYNVCFST 373

Query: 931  VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLT 990
                   L        T  +LP  L++LV +R  +K  MK+ +G   Q L+I+Q+A+KL 
Sbjct: 374  ----SHCLKMDNTKESTPSLLPGALRDLVTQRSEIKRQMKSGAG-NTQLLEIEQRAVKLV 428

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG 1050
            AN +YGCLGF   RFY K +A  IT+ GR IL+ T   +++   L+VIYGDTDS+M+ +G
Sbjct: 429  ANCIYGCLGFKGFRFYNKTMAAFITECGRTILKDTKATLESK-GLQVIYGDTDSVMVDTG 487

Query: 1051 I---DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
            I   D     + ++G + + ++ KY  +++  +  + +++++ KKKY  +     +G   
Sbjct: 488  IKITDPSPSLETLSG-ISELISCKYNNIKLGFEKTFSKLVMMAKKKYFGIYCL--NGA-- 542

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
            +VIE KGL+  RRDW L+++E     +  +L     E   E I   L  ++E M+S    
Sbjct: 543  DVIEEKGLETGRRDWCLVARETISAVMRILLFSPMPE---EEILRMLSSLKESMKSRDK- 598

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQV--ALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
             E Y+I K + K PE+Y   +     QV  ALRLKQ    T    GD + ++I    G S
Sbjct: 599  -ESYLIRKKIQKNPESYNAVQTTSLQQVCLALRLKQERGLTF-HGGDIISFVIALHNGIS 656

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
                V  ++R+              I  DYY   Q+ P + R+       S E +   LG
Sbjct: 657  RPELV--SERSE-------------IHYDYYMKLQVFPPLQRMLEHFSSISIENIQKVLG 701

Query: 1286 LDPSKFQSKPSE 1297
            L  S   +KP +
Sbjct: 702  LYTS--HNKPVQ 711


>gi|298675626|ref|YP_003727376.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
 gi|298288614|gb|ADI74580.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
          Length = 913

 Score =  224 bits (572), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 186/680 (27%), Positives = 319/680 (46%), Gaps = 113/680 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP-SSMWSKIGRLKRSEMP 698
            E  +L R      + D DV+VG+N++ FD+  +  RA       +S+  ++GR       
Sbjct: 236  EEDMLTRFFDIFQEYDPDVVVGYNMNDFDIPYIKDRADYLNNKGASIVPRVGR------- 288

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
                GR +         M  + GR++ DT    R       Y+L  ++K  L +++ +V 
Sbjct: 289  ---DGRLMTYRRLGTRTMVSMTGRIVMDTLPLIRQQFSLKRYTLRNVSKELLGREKLDVE 345

Query: 759  PHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
            PH +++ +    E   + I+Y   D+ L++EL+  L +L     L+ +SG++    + G 
Sbjct: 346  PHQMVEYWNDGGEKTKKFIDYARRDSELALELVTKLQLLDKYIALSQVSGSVLQDVVDGG 405

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            ++  VE LL   F  +  ++P K                                   D 
Sbjct: 406  QSSMVENLLFREFGKQGRVIPPK----------------------------------PDN 431

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--VERSP 935
              +D+ +G+      GG VLEPKKGL D  +++LD+ SLYP+I+  +N+C+TT  V   P
Sbjct: 432  RPDDNEQGEE---IKGGEVLEPKKGLLDN-VVILDYKSLYPTIMMAHNLCYTTVVVNDHP 487

Query: 936  DGLVPHLPSSK-------TTGVLPELLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQAL 987
            +G   + PS           G++P +L+ L+ +R  VK  MK+ S G   +  D  Q AL
Sbjct: 488  NGETINPPSGGEFVNPDVLKGIVPSILETLLNQRSEVKKKMKSISDGDTYRMYDATQLAL 547

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN--------------- 1032
            K+  NS YG  G++ +R Y+  LA  +T  GRE +++T DL+ NN               
Sbjct: 548  KILLNSFYGYSGYARARLYSLTLANAVTSYGRENIQNTRDLINNNIRKVVLKDNQAYLPD 607

Query: 1033 -----------LNLEVIYGDTDSIMIHSGI---DDIA--KAKAIAGKVIQEVNKKY-KCL 1075
                       +NL V+YGDTDS+ IH      +DI+   A+ +  ++ ++V++     +
Sbjct: 608  EISPEDESEDVINLSVVYGDTDSVFIHCSPEYNNDISLEDAECVGTRIAEKVSQSLPDPM 667

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            E++ + + KR L L KK+YA    + ++    + I+ KG++ VRRDW  L+ +  +  L 
Sbjct: 668  ELEFESIAKRGLFLAKKRYALWVFEQENDEWEDSIKVKGMETVRRDWCELTSKTLNRVLE 727

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI---TKTLTKPPEAYPDAKNQPH 1192
             +L E   +  VE + + + +V    R+  V  +K VI   T T     +       QPH
Sbjct: 728  LVLKEGDVDKAVEYVKSVVNRV----RNIDVQKDKDVIDDLTMTRLYSKKKDSYKSKQPH 783

Query: 1193 VQVALRLKQSGYSTGCSA--GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            + V  + K+    TG S   G+ VP++I       +G+ +    RA  P+ +++ +    
Sbjct: 784  LTVIEKTKK---RTGISPPIGERVPFVIV------AGNDL-FVNRAEDPEYVRENN--LT 831

Query: 1251 IDIDYYASQQIHPVVSRLCA 1270
            +D+DYY  +QI P V R+  
Sbjct: 832  LDVDYYIKKQILPPVERILG 851


>gi|387593650|gb|EIJ88674.1| hypothetical protein NEQG_01364 [Nematocida parisii ERTm3]
          Length = 641

 Score =  223 bits (569), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 253/510 (49%), Gaps = 79/510 (15%)

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
            ++L L  +L  I+G L      G ++ RVEYLLLH  R  +Y++P K        +  + 
Sbjct: 59   NLLALAEKLAYITGALLNPIFHGYKSDRVEYLLLHRMRDNQYLIPRK-------SLGGKI 111

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY-DKYILLLD 912
            S                   D DT             Y GG V   K G+Y ++YI L D
Sbjct: 112  S-------------------DKDT-------------YEGGYVFLDKPGVYSERYIALFD 139

Query: 913  FNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            FNSLYPSIIQEYN+CF+T       L        T  +LP  L++LV +R  +K  MK+ 
Sbjct: 140  FNSLYPSIIQEYNVCFST----SHCLKMENTKESTPSLLPGALRDLVTQRSEIKRQMKSG 195

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
            +G  IQ L+I+Q+A+KL AN +YGCLGF   RFY K +A  IT+ GR IL+ T   +++ 
Sbjct: 196  AG-NIQLLEIEQRAVKLVANCIYGCLGFKGFRFYNKTMAAFITECGRTILKDTKATLESK 254

Query: 1033 LNLEVIYGDTDSIMIHSGI---DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
              L+VIYGDTDS+M+ +GI   D     + ++G + + ++ KY  +++  +  + +++++
Sbjct: 255  -GLQVIYGDTDSVMVDTGIKITDPSPSLETLSG-ISELISCKYNNIKLGFEKTFSKLVMM 312

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKY  +     +G   +VIE KGL+  RRDW L+++E     +  +L     E   E 
Sbjct: 313  AKKKYFGIYCL--NGA--DVIEEKGLETGRRDWCLVARETISAVMRILLFSPMPE---EE 365

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV--ALRLKQSGYSTG 1207
            I   L  ++E M+S     E Y+I K + K PE+Y   +     QV  ALRLKQ    T 
Sbjct: 366  ILRMLSSLKESMKSRDK--ESYLIRKKIQKNPESYNAVQTTSLQQVCLALRLKQERGLTF 423

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD + ++I    G S    V  ++R+              I  DYY   Q+ P + R
Sbjct: 424  -HGGDIISFVIALHNGISRPELV--SERSE-------------IHYDYYMKLQVFPPLQR 467

Query: 1268 LCASIEGTSPERLADCLGLDPSKFQSKPSE 1297
            +       S E +   LGL  S   +KP +
Sbjct: 468  MLEHFSSISIENIQKVLGLYTS--HNKPVQ 495


>gi|410670688|ref|YP_006923059.1| DNA polymerase Pol2 [Methanolobus psychrophilus R15]
 gi|409169816|gb|AFV23691.1| DNA polymerase Pol2 [Methanolobus psychrophilus R15]
          Length = 913

 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 176/677 (25%), Positives = 315/677 (46%), Gaps = 105/677 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E  +LNR      + D D++ G+NI  FD+  ++ R  +   P S+   +        
Sbjct: 240  SNEADMLNRFFEVFQQYDPDIIGGYNILDFDIPYIVDRVSILNDPVSIVKPVTG------ 293

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
               R GR +         M  + GR++ D     R       Y+L  +AK  L  ++ ++
Sbjct: 294  ---RDGRLLSYRKIGTRTMVSMPGRVVVDALPLVRSQYSLKRYTLRNVAKELLEMEKLDI 350

Query: 758  GPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P ++   +  + E ++  I+Y + D+ L+MEL+  L +L     +  +SG+L  + + G
Sbjct: 351  APSEMEDHWNDSGEKILRFIDYAQRDSDLAMELLMKLRLLDKYIAVAQVSGSLLQEVVDG 410

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             +   V+ LLL  +  +  ++P K                          ++++ +F N 
Sbjct: 411  GQTSMVDNLLLREYGKRDRVIPPK-------------------------PSDDEVSFRNL 445

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERS 934
            +S              GG VLEPKKGL +  I+++D+ SLYP+I+  +N+C+TTV  +  
Sbjct: 446  SSE----------GLKGGEVLEPKKGLLEN-IIIMDYKSLYPTIMMAHNLCYTTVVEKDR 494

Query: 935  PDG--LVP-----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQA 986
            P G  + P      +P+    GV+P +L+NL+ RR   K  M++A+  +  + LD  Q A
Sbjct: 495  PKGETIKPPSGGEFVPAEVFKGVMPAILENLLNRRIETKKRMRSAATEEEHRVLDATQLA 554

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN------------ 1034
            LK+  NS YG  G++ +R Y+ PLA  +T  GRE + +T  ++   +N            
Sbjct: 555  LKILLNSFYGYSGYTRARLYSLPLANAVTSFGRENILNTRSIINGTINKVILRDSKVLFT 614

Query: 1035 --------------LEVIYGDTDSIMIH-SGIDDIAKAKA------IAGKVIQEVNKKYK 1073
                          L V+YGDTDS+ +  +  +DI+   A      IAG V   +     
Sbjct: 615  EEVDTPKTGDRMISLSVVYGDTDSVFVQCTSKNDISLDDAGLVGNRIAGTVSASLPDP-- 672

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             +E++ + + KR LLL KK+YA    +       + I+ KG++ VRRDW  L+ +  +  
Sbjct: 673  -MELEFESIAKRGLLLAKKRYAIWVFERSGDGWKDSIKVKGMETVRRDWCELTSKTLNRV 731

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            L  +L E   E  V  +   + +V+  D+R  +  ++   +T+  +K    Y +   QPH
Sbjct: 732  LELVLKEGKVEAAVAHVREVVDRVRNIDVRKDKDIIDDLTMTRMFSKNASRYKN--KQPH 789

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            + V  ++++   S   + G+ +P++I   +            RA  P+ +++ +    ID
Sbjct: 790  ITVVEKIEERTGSP-PAVGERIPFVIIAGKDL-------FVNRAEDPEYVREHN--IPID 839

Query: 1253 IDYYASQQIHPVVSRLC 1269
            +DYY  +Q+ P V R+ 
Sbjct: 840  VDYYIKKQVLPPVERIL 856


>gi|81157941|dbj|BAE48221.1| DNA polymerase delta subunit [Chlorella pyrenoidosa]
          Length = 1087

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 181/617 (29%), Positives = 299/617 (48%), Gaps = 80/617 (12%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS-MWS 687
            +G+ V+  E  E+ LL R    + + D D+++G+NI  FDL  LL+RA   ++P    W 
Sbjct: 348  SGAEVMSFEH-EKDLLLRWRDLVLETDPDIIIGYNIVNFDLPYLLNRADTLKIPQFWTWG 406

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            ++ R +R +M   R     +G+     I   I GR+  D     +   +  SYSL  ++ 
Sbjct: 407  RM-RNRRCKMKDARFSSKAYGTHDFKEI--TIEGRVQFDLLQAIQRDHKLSSYSLNSVSA 463

Query: 748  TQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
              L + +++V   D+ K+     ES   L  Y   DA+L   L+  L ++    ++  ++
Sbjct: 464  HFLGEQKEDVHHSDISKLQDGNAESRRRLAIYCLKDAYLPQRLVDKLMLMYNYVEMARVT 523

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G      L   ++ +V   +L   R K  +VP+           K+  + G         
Sbjct: 524  GVPMSYLLARGQSIKVFSQILRKSRTKGLVVPN----------MKRGGDAG--------- 564

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                 G AY G  VLEP+ G YD+ +  LDF SLYPSI+  +N+
Sbjct: 565  --------------------EGVAYEGATVLEPRAGYYDRPVATLDFASLYPSIMMAHNL 604

Query: 927  CFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWMKT 971
            C+TT+   P G     PS   T               GVLPE+L+ L+  R+  K  M+T
Sbjct: 605  CYTTL--LPKGQEKMFPSEHLTFTPNNDVFVKPSLAMGVLPEILQELLTARKRAKKDMET 662

Query: 972  ASGLKIQQL-DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
            A+   ++ + + +Q ALK++ANS+YG  G +        ++  +T  GRE++  T   VQ
Sbjct: 663  ATDPFLRAVYNGRQLALKVSANSVYGFTGATVGALPCLEISSSVTSFGREMIMETRRRVQ 722

Query: 1031 NNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDG 1081
                       + EVIYGDTDS+M++ G+DD+A A  +  +   EV+K + K ++++ + 
Sbjct: 723  ERYCKANGYSHDAEVIYGDTDSVMVYFGVDDVAAAMQLGLEAAAEVSKAFIKPIKLEFEK 782

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA   + +     ++ I+ KG++ VRRD  LL + V   CL +IL ER
Sbjct: 783  VYNPYLLISKKRYAG--LLWTKPEKWDKIDTKGIETVRRDNCLLVRNVVTTCLEKILVER 840

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
            +  +  E +      V  D+   ++ L   VI+K LT+  + Y D K   HV++A ++K+
Sbjct: 841  NPGEACEYVKG----VISDLLMNKLDLSLLVISKGLTQNADEY-DTKAA-HVELAKKMKK 894

Query: 1202 SGYSTGCSAGDTVPYII 1218
               +T  + GD VPY+I
Sbjct: 895  RDPATAPAVGDRVPYVI 911


>gi|336476181|ref|YP_004615322.1| DNA polymerase Pol2 [Methanosalsum zhilinae DSM 4017]
 gi|335929562|gb|AEH60103.1| DNA polymerase Pol2 [Methanosalsum zhilinae DSM 4017]
          Length = 905

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 190/682 (27%), Positives = 318/682 (46%), Gaps = 113/682 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E ALLNR      + D DV+ G+NI+ FD+  ++ R +  +    ++ S  GR       
Sbjct: 232  EPALLNRFFEIFREYDPDVVTGYNINDFDIPYIVDRIKTLQSSGITINSACGR------- 284

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
                GR +         M  I GR++ D+    R       Y+L  +++  L+ ++ +V 
Sbjct: 285  ---DGRPLDYRKIGIRSMVSITGRIVADSLPIIRQQFSLKRYNLQTVSRELLDMEKLDVS 341

Query: 759  PHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
            P  + + +  + E + + I+Y   D+ L+MEL+  L +L     L  ISG+L  + L+G 
Sbjct: 342  PQQMEEYWLDSGEKIRKFIDYARRDSELAMELLLKLRLLDKFVALAQISGSLPQEILEGG 401

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
            +   VE LLL  FR   Y++P +                   D N+             +
Sbjct: 402  QTSMVENLLLREFRKHDYVLPPR------------------PDENIV------------S 431

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERS 934
            S N   +G +     GG VLEPKKGL +K +++LD+ SLYP+I+  +N+C+TTV   ER 
Sbjct: 432  SRNRESEGLK-----GGEVLEPKKGLLEK-VVILDYKSLYPTIMMAHNLCYTTVIDIER- 484

Query: 935  PDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQA 986
            PDG +   PS           G++P +L+NL+ RR   K  MK A +  + +  D  Q A
Sbjct: 485  PDGNIIKPPSGGEFVSAEVFRGIVPSILENLLNRRTETKGLMKGAKTEDEYRVYDATQLA 544

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN------------ 1034
            LK+  NS YG  G++ +R Y+  LA  +T  GRE +  T  +V+  +             
Sbjct: 545  LKILLNSFYGYSGYTRARLYSLALANAVTSFGRENILKTRSVVEKEIETVILREGKAYLK 604

Query: 1035 --------------LEVIYGDTDSIMIHSG------IDDIA-KAKAIAGKVIQEVNKKYK 1073
                          L V+YGDTDS+ +         ++D+      IAG V   +     
Sbjct: 605  EEVTSKDTDDVIVKLSVVYGDTDSVFVQCSSETNLELEDVELVGNRIAGIVSHSLPDP-- 662

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             +E++ + + +R L + KK+YA    +       E I+ KG++ VRRDW  L+    +  
Sbjct: 663  -MELEFESIAERALFIAKKRYALWMFERSGTEWSESIKVKGMETVRRDWCELTSRTLNSV 721

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            L  IL E   E  +E +   + +V+  D+ +    ++  V+T+  +K   +Y +   QPH
Sbjct: 722  LELILKEGDVEKAMEYVRGVVDRVRNIDVANDPEIIDDLVLTRMYSKSMGSYKN--KQPH 779

Query: 1193 VQVALRLKQSGYSTGC--SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            + V  ++K+    TG   S G+ +P++I   +            RA  PD +++ +    
Sbjct: 780  LTVIEKMKK---RTGAAPSIGERIPFVIVAGKDL-------FVNRAEDPDYVRQNN--IS 827

Query: 1251 IDIDYYASQQIHPVVSRLCASI 1272
            +D+DYY  +QI P VSR+ ++ 
Sbjct: 828  LDVDYYIKKQILPPVSRILSAF 849


>gi|435850447|ref|YP_007312033.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
            hollandica DSM 15978]
 gi|433661077|gb|AGB48503.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
            hollandica DSM 15978]
          Length = 903

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 183/688 (26%), Positives = 325/688 (47%), Gaps = 104/688 (15%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ-VCRVPSSM 685
            S AG +V   ++ E ++L R    L   D D+L+G+NI+ FD+  +  R + +    +++
Sbjct: 220  SGAGPDVESLQNEE-SMLKRFFEILRDYDPDILIGYNINDFDIPYISDRIKFLADSGTNI 278

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
             S  GR           GR +         M  +AGR++ D     R       Y+L  +
Sbjct: 279  NSGSGR----------DGRPMSYRKIGTMTMISMAGRVVVDVLPLVRSQFSLKRYTLRNV 328

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            AK  L++++ +V P ++   +    E L++ I+Y   D+ L+MEL+  L +L     ++ 
Sbjct: 329  AKELLDREKLDVAPSEMEDHWNDEGEKLLKFIDYARRDSELAMELVMKLQLLDRYIAISR 388

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            +SG+L  + + G +   VE LLL   R +  ++P K                   D N+ 
Sbjct: 389  VSGSLLQEVIDGGQTSMVENLLLRECRIRDRVIPPK------------------PDDNLV 430

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             + + K      GG VLEPKKGL +  +++LD+ SLYP+I+  +
Sbjct: 431  -----------------YSRNKNSEGLKGGEVLEPKKGLLEN-VVILDYKSLYPTIMMAH 472

Query: 925  NICFTTV-ERSPDG----LVP-----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG 974
            N+C++TV E+   G    + P      + +  + G++P +L+NL+ RR   K  MK  S 
Sbjct: 473  NLCYSTVVEKDIPGEGETITPPSGGRFVTADVSKGIMPAILENLLNRRIETKKRMKDISN 532

Query: 975  L-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN-- 1031
              + + LD  Q A+K+  NS YG  G++ +R Y+  LA  +T  GRE + +T  L+++  
Sbjct: 533  EDEYKALDATQLAMKILLNSFYGYAGYTRARLYSLTLANAVTSFGRENILTTRSLIEDTI 592

Query: 1032 -----------------------NLNLEVIYGDTDSIMIH-SGIDDIAKAKA-IAGKVIQ 1066
                                   +++L V+YGDTDS+ +  +G  +I+   A + GK I 
Sbjct: 593  HTIYLKDGNSYLQSEIASDPLNKDISLSVVYGDTDSVFVQCTGKTEISLEDAELVGKKIS 652

Query: 1067 EVNKKY--KCLEIDLDGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIERKGLDMVRRDWS 1123
             +        +E++ + + KR L + KK+YA  V  +F DG   + I+ KG++ VRRDW 
Sbjct: 653  GIVSASLPDPMELEFESIAKRALFIAKKRYAIWVFERFGDGWK-DGIKVKGMETVRRDWC 711

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPPE 1182
             L+ +  +  L  +L     E  V+ +   +  ++  D+   +  ++   +T+  +K  E
Sbjct: 712  ELTSKTLNRVLELVLKAGEVEAAVQHVRKVVDSIRNLDVTKDRDIIDDLTMTRMYSKRRE 771

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y +   QPH+ VA +++Q   S     G+ +P++I   +            RA  P+ +
Sbjct: 772  HYKN--KQPHITVAEKMEQRTGSL-PPVGERIPFVIIAGKDL-------FVNRAEDPEYV 821

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            ++ +    ID+DYY  +QI P V R+  
Sbjct: 822  RENNVP--IDVDYYVKKQILPPVERILG 847


>gi|302817634|ref|XP_002990492.1| hypothetical protein SELMODRAFT_428950 [Selaginella moellendorffii]
 gi|300141660|gb|EFJ08369.1| hypothetical protein SELMODRAFT_428950 [Selaginella moellendorffii]
          Length = 220

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/212 (52%), Positives = 140/212 (66%), Gaps = 32/212 (15%)

Query: 467 PFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCK 526
           P KDP LP DL+G +F S+L                          FS C       WCK
Sbjct: 12  PVKDPTLPGDLRGAHFTSVL-------------------------LFSGC-------WCK 39

Query: 527 YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKID 586
            E++VDSPKD+   S+ K V+E+P + V  I LKTV N++Q++NEIVSASVV C + K+D
Sbjct: 40  VEVSVDSPKDVANISTLKPVSEIPRLIVAIICLKTVVNQKQNLNEIVSASVVFCERVKVD 99

Query: 587 TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNR 646
            PM  SEW K  ML HF++VRKLDGG++PMGF+ E +  N+K+  +VL CE SERALLN 
Sbjct: 100 PPMPQSEWNKQEMLEHFSIVRKLDGGVYPMGFSSEVSHINNKSRCSVLSCEGSERALLNC 159

Query: 647 LMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
           LMI+L++LD DVLVGHN+SGFDLDVLLHR QV
Sbjct: 160 LMIKLHQLDPDVLVGHNVSGFDLDVLLHRLQV 191


>gi|386002196|ref|YP_005920495.1| DNA polymerase [Methanosaeta harundinacea 6Ac]
 gi|357210252|gb|AET64872.1| DNA polymerase [Methanosaeta harundinacea 6Ac]
          Length = 931

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 202/711 (28%), Positives = 323/711 (45%), Gaps = 128/711 (18%)

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
             +VLCC   ERA+L R +  L   D DVL G+N + FD   L  RA+   V         
Sbjct: 251  GDVLCC-GGERAMLARFVEILKDYDPDVLAGYNSAEFDFPYLEERARRLNVEV------- 302

Query: 691  RLKRSEMP-KLRKGRTIFGSGASPGIMSC----IAGRLLCDTFLCSRDLLREVSYSLTQL 745
            R+ R   P ++RK            I++     I GR++ D     R       Y+L   
Sbjct: 303  RVGRDGGPWRVRK------------IVNQTRVEITGRIVVDLLPLVRSSFSLKRYTLRNA 350

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            +   L  ++ +V P ++  ++ +  +    L+ Y   D++L++ L+  L +L     L  
Sbjct: 351  SLELLGVEKHDVDPKEMEALWTSSGDDFARLVSYSRRDSYLALHLLTDLQLLDKYIALAQ 410

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
             SG+L    + G +   VE  L   F+ +  ++P K     +  ++  R+    E     
Sbjct: 411  TSGSLLQDVIDGGQTGMVENFLFRKFQERGRVIPPK----PDADLSSARAAQSSE----- 461

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                        GG VLEPKKGL +  +L+LD+ SLYPSI+  +
Sbjct: 462  --------------------------LKGGEVLEPKKGLVED-VLILDYRSLYPSIMMAH 494

Query: 925  NICFTTV---ERSPDGLVPHLPSS-------KTTGVLPELLKNLVQRRRMVKTWMKTASG 974
            N+C++TV   ER P G V   PS        +  G++P +L +L+ +R  +K  MK+AS 
Sbjct: 495  NLCYSTVVTDERPPSGGVVKPPSGGEFVLPGEAPGIVPGVLSDLLAQRTDIKRRMKSASE 554

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ---- 1030
             +   LD QQ ALK+  NS YG  G++ +R Y+ PLA  +T  GR  + +T  +V+    
Sbjct: 555  EERSILDAQQYALKILLNSFYGYSGYARARLYSLPLANAVTSFGRTNILNTKRMVEEIGS 614

Query: 1031 ----------------------------NNLNLEVIYGDTDSIMIH------SGID-DIA 1055
                                           +L V+YGDTDS+ I       SG+   + 
Sbjct: 615  VYVRDGKALLPEEMASASGDSFPAVGEFKRFDLSVVYGDTDSVFIRLKPFGGSGVKPTLE 674

Query: 1056 KAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A+ + GK+ + V  +    +E+  +   +R L L KK+YA    +   G   + I+ +G
Sbjct: 675  EAELVGGKIAETVTSRLPPPMELVFEAFARRGLFLVKKRYALWVFEKVGGEWRDKIKVRG 734

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVI 1173
            ++ VRRDW  L+ +  +  L  +L E   E+ V+   + + ++Q  D+R     LE  V+
Sbjct: 735  METVRRDWCELTSKTLNRSLELVLMEGRVEEAVDLAKSVIDRLQRLDLRKDPEILEDLVL 794

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            T+  TK   +Y +   QPHVQ+A +++  G     S GD VP++I   +G          
Sbjct: 795  TRRYTKSTASYKN--KQPHVQLAEKMRARGGPV-PSVGDRVPFVIVRGRGL-------FV 844

Query: 1234 QRARHPD-ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             RA  P   L+ G    +ID DYY ++QI P + RL A   G S E+L  C
Sbjct: 845  DRAEDPSYALENG---LLIDTDYYINKQILPPLLRLLAPF-GVSKEQLVCC 891


>gi|307110156|gb|EFN58392.1| DNA polymerase delta subunit [Chlorella variabilis]
          Length = 1011

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 290/607 (47%), Gaps = 81/607 (13%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            E+ALL R    + + D D+++G+NI  FDL  LL+RA   ++P   W+  GRL+  R  M
Sbjct: 282  EKALLLRWRDLVLEADPDIIIGYNIVNFDLPYLLNRADTLKIPQ-FWT-WGRLRNRRCRM 339

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
               R     +G+     I   I GR+  D     +   +  SYSL  ++   L + +++V
Sbjct: 340  KDARFSSKAYGTHDFKEI--SIEGRVQFDLLQAIQRDHKLSSYSLNSVSAHFLGEQKEDV 397

Query: 758  GPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
               D+ K+     ES   L  Y   DA+L   L+  L  +    ++  ++G      L  
Sbjct: 398  HHSDISKLQDGNAESRRRLAIYCLKDAYLPQRLVDKLMYMYNYVEMARVTGVPMSYLLSR 457

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             ++ +V   +L   R K  +VP                                      
Sbjct: 458  GQSIKVFSQILRKSRTKNLVVP-------------------------------------- 479

Query: 877  TSHNDHRKG--KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-VER 933
               N  R G    G AY G  VLEPK G YDK +  LDF SLYPSI+  +N+C+TT V +
Sbjct: 480  ---NMKRGGDPNEGVAYEGATVLEPKAGYYDKPVATLDFASLYPSIMMAHNLCYTTLVPK 536

Query: 934  SPDGLVP--HLP----------SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-L 980
              + + P  HL           SS  TGVLPE+L+ L+  R+  +  M  A+   ++   
Sbjct: 537  GHENMFPKEHLTISPNGDTFVKSSLATGVLPEILQELLAARKRARKDMGEATDPFLRAVF 596

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN------ 1034
            + +Q ALK++ANS+YG  G +        ++  +T  GRE++  T   V    N      
Sbjct: 597  NGRQMALKVSANSVYGFTGATVGALPCLEISSSVTSFGREMIMETRRRVMEKYNRANGYT 656

Query: 1035 --LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKK 1091
               +VIYGDTDS+M++ G+DD A A  +  +  +EV+K + K ++++ + +Y   LL+ K
Sbjct: 657  HDADVIYGDTDSVMVYFGVDDTAAAMQLGLEAAEEVSKAFIKPIKLEFEKVYNPYLLISK 716

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            K+YA   + +     ++ I+ KG++ VRRD  LL + V   CL +IL ER+  +  + + 
Sbjct: 717  KRYAG--LLWTKPEKWDKIDTKGIETVRRDNCLLVRNVVTTCLEKILVERAPGEACDYVK 774

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
                 V  D+   ++ L   VI+K LT+  + Y +     HV++A ++K+   +T  + G
Sbjct: 775  G----VISDLLMNKLDLSLLVISKGLTQDADDYEN--KAAHVELAKKMKKRDLATAPAVG 828

Query: 1212 DTVPYII 1218
            D VPY+I
Sbjct: 829  DRVPYVI 835


>gi|168019806|ref|XP_001762435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686513|gb|EDQ72902.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1173

 Score =  213 bits (543), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 216/814 (26%), Positives = 365/814 (44%), Gaps = 121/814 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F++   + G +W+ +   + C + +R+S+C+ E+ +  P   + S  SK V+  P   V 
Sbjct: 302  FMIDCDIVGGNWIELPAGNYCKSTRRLSYCQLELDIQYPISCQGSCYSKIVSYAP---VG 358

Query: 556  AINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
              +    F        I+S  + C   K     P    E      +++   V+   G   
Sbjct: 359  QYSKMAPF-------RILSFDIECAGRKGHFPEP----EHDPVIQIANLVTVQ---GEQR 404

Query: 615  PMGFNKEATDRNSK-AGSNVLCCESSERALL--NRLMIELYKLDSDVLVGHNISGFDLDV 671
            PM  N       S   G++V+  ++ +  LL    L+ E+   D D+++G+NI  FDL  
Sbjct: 405  PMVKNVMTLKSCSPIVGADVMSFDTEKEVLLAWRELVTEV---DPDIIIGYNICKFDLPY 461

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF 728
            L+ RAQ   V    +  +GR++ S   +LR     F S   G        I GR+  D  
Sbjct: 462  LIERAQKLNVVE--FPMLGRIRNS---RLRIKDASFSSRQYGIRESKEVTIEGRVQFDLL 516

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLS 786
               +   +  SYSL  ++   L + +++V  H ++   Q    E+   L  Y   DA+L 
Sbjct: 517  QAIQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIISDLQNGNSETRRRLAVYCLKDAYLP 575

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              L+  L  +    ++  ++G      L  AR Q ++ L  LL   + + +++P+     
Sbjct: 576  QRLLDKLMFVYNYVEMARVTGVPISFLL--ARGQSIKVLSQLLRKSKQRNFVLPN----- 628

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                  K +   G                              G  + G  VL+ K G Y
Sbjct: 629  -----VKSQGAGG------------------------------GETFEGATVLDAKAGYY 653

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT----------------VERSPDGLVPHLPSSKTT 948
            DK I  LDF SLYPSI+  YN+C+ T                V ++P G V   PS +  
Sbjct: 654  DKPIATLDFASLYPSIMMAYNLCYCTLVRAEDLQKFMLGPEEVTKTPSGDVFVKPSLE-K 712

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LPE+L+ L+  R+  K  +K A+  L+   LD +Q ALK++ANS+YG  G +  +   
Sbjct: 713  GILPEILEELLAARKRAKADLKEATDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPC 772

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKA 1059
              ++  +T  GR+++  T  LVQ   N         EVIYGDTDS+M+  G  D+ +A  
Sbjct: 773  LEISSSVTSFGRQMIDHTKKLVQERFNTSNSYSYDAEVIYGDTDSVMVQFGTPDVDEAMK 832

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +  Q+++  + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ V
Sbjct: 833  LGREAAQQISATFTKPIKLEFEKVYWPYLLISKKRYAG--LLWTKPEKYDKMDTKGIETV 890

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  LL K +   CL +IL +R     V+ + N++     D+   ++ L   VITK LT
Sbjct: 891  RRDNCLLVKNLITECLHKILIDRDIPGAVQYVKNTI----SDLLMNRMDLSLLVITKGLT 946

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K  +AY       HV++A R+++   +T  + GD VPY+I         ++ G     + 
Sbjct: 947  KAGDAY--ESKTAHVELAERMRKRDAATAPTVGDRVPYVII-------KAAKGAKAYEKS 997

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             D +   +    ID  YY   Q+   + R+   I
Sbjct: 998  EDPIYVLENNIPIDPQYYLENQLSKPLLRIFDPI 1031


>gi|85014201|ref|XP_955596.1| DNA polymerase delta catalytic subunit [Encephalitozoon cuniculi
            GB-M1]
 gi|19171290|emb|CAD27015.1| DNA POLYMERASE DELTA CATALYTIC (LARGE) CHAIN [Encephalitozoon
            cuniculi GB-M1]
 gi|449329935|gb|AGE96202.1| DNA polymerase delta catalytic large chain [Encephalitozoon cuniculi]
          Length = 974

 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 190/718 (26%), Positives = 331/718 (46%), Gaps = 108/718 (15%)

Query: 626  NSKAGSNVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
            NS A  ++ C + +             E+ LL        +LD DV+VG+N+ GFD+  +
Sbjct: 230  NSYASQDIFCLKETTGIPGVNVHWYETEKELLESWKKYFMELDPDVIVGYNVKGFDIPYI 289

Query: 673  LHRAQVCRVPSSMWSKIGR-LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            L R ++  + S  +S +GR  K++          +FGS  +  +   I GRL+ D  +  
Sbjct: 290  LSRGEILGIES--FSVLGRSRKKARTRDTTMSSNMFGSITTTEVE--IDGRLIIDMMVVI 345

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMEL 789
            R   +  SYSL  ++     K++KE  P+  +   Q+   ++   +  Y   D  L + L
Sbjct: 346  RRDFKLRSYSLNSVS-IHFLKEQKEDVPYSSIGELQSKNKDTRRRIASYCLRDTVLPLRL 404

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
               L+VL    +L+ ++G           A ++  L+  A   + +++PD          
Sbjct: 405  FNTLNVLINYTELSRVTGTPIEYFFTRGMAIKIFTLVYRAASKEDFMIPDI--------- 455

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                                D    N T             + GG V+EP+KG Y+K + 
Sbjct: 456  --------------------DPFESNKT-------------FEGGFVIEPRKGFYNKPVS 482

Query: 910  LLDFNSLYPSIIQEYNICFTTV-----------ERSPDGLVPHLPSSKTTGVLPELLKNL 958
            ++DF+SLYPSI+  +N+C+TT+            ++P G      + +  G+LP +L +L
Sbjct: 483  VMDFSSLYPSIMISHNLCYTTLLTKEQYRILGGTKTPTGNY-FCSAERKKGLLPRILTDL 541

Query: 959  VQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            +  R+ +K  ++      ++  L+ +Q A KL ANS+YG  G S  +     +++ +T  
Sbjct: 542  LTSRKRIKEELEREKDSALRACLNGRQLAFKLCANSLYGFTGASRGKLPCFEISQSVTGF 601

Query: 1018 GREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            GRE++  T  L++ N + +        VIYGDTDS+M+     DI K   ++ ++ + + 
Sbjct: 602  GREMIILTKKLIEENFSRKNGYTHDSVVIYGDTDSVMVDFDEQDIEKVFKMSKEISEFIT 661

Query: 1070 KKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
             K+ K + ++ + +Y   LL+ KK+YA   + + +      I+ +G++ VRRD   L KE
Sbjct: 662  SKFVKPVSLEFEKVYYPYLLINKKRYAG--LLYSNPENPSKIDTRGIETVRRDNCRLVKE 719

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V +  L  IL +++ E   + + +++     D+  G+  L   VI+K+LTK  + Y    
Sbjct: 720  VVETVLEMILYQKNVEKAKQFVKDAV----RDLYLGRTDLSLLVISKSLTKAGDKY--ES 773

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
             Q HVQ+A +L++   ST    GD VPY+I  ++        G A   +  D +   +  
Sbjct: 774  KQAHVQLAEKLRKRDESTAPVLGDRVPYVIVRKEK-------GAAAHEKSEDPVYVLENN 826

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPE-------RLADCLGLD-PSKFQSKPSET 1298
              ID +YY SQQI   +SR+   I     E       R+A   GL  P     KP++T
Sbjct: 827  LPIDTEYYISQQISKPLSRIFEPIMDNVQELFRGDHTRIAASTGLKGPMNTFLKPTDT 884


>gi|378755233|gb|EHY65260.1| hypothetical protein NERG_01706 [Nematocida sp. 1 ERTm2]
          Length = 996

 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 173/564 (30%), Positives = 270/564 (47%), Gaps = 93/564 (16%)

Query: 787  MELMFHL-SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
            M ++F   S+LPL  +L+ I+G L      G ++ RVEYLLLH  R  +Y++P K    K
Sbjct: 393  MHMIFKKGSLLPLAEKLSYITGALLNSIFHGFKSDRVEYLLLHRMRDNQYLIPKKLLAGK 452

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY- 904
                        V+ ++                            Y GG V   K G+Y 
Sbjct: 453  ------------VDSKD---------------------------TYEGGYVFLEKPGMYS 473

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTV-ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            D YI L DFNSLYPSIIQEYN+CF+T  + S D      PS     +LP  L++LV +R 
Sbjct: 474  DTYISLFDFNSLYPSIIQEYNVCFSTSHDLSMDSKNVSRPS-----LLPGALRDLVAQRT 528

Query: 964  MVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             +K  MK   G  +  L+I+Q+A+KL AN +YGCLGF   RFY K +A  IT+ GR IL+
Sbjct: 529  EIKKQMKAGKG-DVLLLEIEQRAVKLVANCIYGCLGFKGFRFYNKAMAAFITECGRSILK 587

Query: 1024 STVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK----KYKCLEIDL 1079
             T   +++N    VIYGDTDS+M+ +GI     +   + K++ E++     KY+ +++  
Sbjct: 588  DTKTTLESN-GYRVIYGDTDSVMVDTGIG--TSSAPPSNKLLDEISDSISCKYRTIKLGF 644

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            +  + +++++ KKKY    V   +G     +E KGL+  RRDW  +++E G   + ++L 
Sbjct: 645  EKTFLKLVMMAKKKYFG--VVHSNGA--NEVEEKGLETGRRDWCEMAQE-GISAVIRVLL 699

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
              +  +    +  + +K +    +     E ++I K + K PE+Y   +     QV+L L
Sbjct: 700  YSTAPEEEILLLLAKLKEKIQTHNK----ESFLIRKKIQKAPESYNAVQGTSLQQVSLAL 755

Query: 1200 K-QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            + Q   +    AGD + +++    G S               EL    G+  I  DYY  
Sbjct: 756  RLQKERNFTFQAGDIISFVMALHNGVSRA-------------ELVSECGE--IHYDYYMK 800

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYR 1318
             Q+ P + R+       S E +   LGL  S   S+P++   S+PS        D +   
Sbjct: 801  MQVFPPIQRMLEYFPSISIESIQKLLGLYVS--HSRPAQ--KSEPSD----MPADIK--- 849

Query: 1319 GCEPLILSCPSCSSTFDCPAVCSS 1342
              E L +  P CS + D    C++
Sbjct: 850  --EALAVVSPCCSQSQDIGTHCTA 871


>gi|20094475|ref|NP_614322.1| B family DNA polymerase [Methanopyrus kandleri AV19]
 gi|19887571|gb|AAM02252.1| B family DNA polymerase [Methanopyrus kandleri AV19]
          Length = 830

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 186/665 (27%), Positives = 314/665 (47%), Gaps = 102/665 (15%)

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
            + V+ C  SE A L R   E  ++D DV+  +N   FDL  L HRA    +  S  ++  
Sbjct: 223  TEVIVC-RSEAAALRRFFDEFRRVDPDVVFTYNGDEFDLPYLQHRAGKLGIDVSPLAR-- 279

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
                   P  ++G  +   G      S I GR   D +  +R  L+   ++L +  K  L
Sbjct: 280  -------PAGKRGIILKHGGGR--YASDIFGRAHVDLYHTARKNLKLERFTLEEAVKDVL 330

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
              +++E+   D+ + ++   +L EL+ Y   DA  ++EL   L+ + L  +L+ ++    
Sbjct: 331  GVEKEEMELADINEAWKR-GNLDELMRYSAEDAHYTLELGLELAQVEL--ELSYLTRLPL 387

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
                + +  Q  E+  ++  R +  +VP+K T                            
Sbjct: 388  PDATRFSFGQLAEWRAIYKARQEDILVPNKPT---------------------------- 419

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC--- 927
                      D  K +R  AY G +V EP+ GL++  ++ +DF SLYP+++  +NI    
Sbjct: 420  ---------RDEYKRRRRKAYKGAIVFEPEIGLHEN-VVCVDFASLYPNVMVAHNISPDT 469

Query: 928  -------FTTVER---------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
                     TVE          +PD  V H    +  G  P L++ L++RRR +K  ++ 
Sbjct: 470  FDCDCCPRVTVEEVDDPTDATVAPD--VGHKFCKRRKGFFPRLVEGLIERRRELKRRLRK 527

Query: 972  ----ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
                +   + + LD++QQA K+ ANS YG +G++N+R++ +  AE +T  GR  +     
Sbjct: 528  LDTESHPHEAKILDVRQQAYKVLANSYYGYMGWANARWFCRECAESVTAWGRYYISEVRR 587

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
            + +    L+V+YGDTDS+ +     D+ +      + ++EVN +   +E++L+  YKR+L
Sbjct: 588  IAEEKYGLKVVYGDTDSLFVKLPDADLEETIERVKEFLKEVNGRLP-VELELEDAYKRIL 646

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
             + KKKYA      +DG     I  KGL++VRRDW+ +++E     L +IL++   E  +
Sbjct: 647  FVTKKKYAGYT---EDGK----IVTKGLEVVRRDWAPIARETQRRVLKRILADNDPEAAL 699

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + IH  L    E ++SG V +++  +T  LTK P  Y   +  PHV+ ALRL +      
Sbjct: 700  KEIHEVL----ERLKSGDVDIDELAVTSQLTKKPSEY--VQKGPHVRAALRLARH-LGVE 752

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               G  V Y+I    G+ S  +        +P EL + +GK   D+DYY   QI P V R
Sbjct: 753  PEPGTIVRYVIVRGPGSVSDKA--------YPVELVREEGK-EPDVDYYIEHQILPAVER 803

Query: 1268 LCASI 1272
            +  +I
Sbjct: 804  IMRAI 808


>gi|410720|gb|AAB28217.1| DNA polymerase alpha, DNAPol alpha [Plasmodium falciparum, K1,
            Peptide, 1855 aa]
          Length = 1855

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 272/542 (50%), Gaps = 72/542 (13%)

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +LK+LV++R ++K  +       K + L IQ  ++KL +NS+YGCLG +N+RFYA
Sbjct: 1150 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLLIQSLSIKLISNSIYGCLGNTNNRFYA 1209

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG-----IDDIAKAKAIAG 1062
            K LA  IT +GR +L+ T   V+   NL+VIYGDTDSIMI +G     I++  ++  +A 
Sbjct: 1210 KHLASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFKLAH 1269

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
             +   +NK YK LE+DL+ ++ ++LLLKKKKYA  KV   +   YE  E KG++ ++RD+
Sbjct: 1270 LIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDNNLEKYEY-EMKGINFIKRDF 1328

Query: 1123 SLLSKEVGDFCLSQILSERSCE----------DVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            S +SK +G+  L  I + R  +          D+ E IH  L  + + +++ +  L+ Y+
Sbjct: 1329 SKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDLDYYI 1388

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS-----SG 1227
            ITK LTK    Y D  +  HV VA R+ + GY+        + Y +C  +  S     + 
Sbjct: 1389 ITKKLTKNVHEYQDKNSLGHVLVAERMIKDGYNI--CVNKEIQYCVCTSEDASRFYKKTS 1446

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
              +  +Q     +E+KK + K  ID +YY   QI   ++RLC  IEGTS E+L+ C  + 
Sbjct: 1447 EKLNNSQCCFSINEIKKYNLK--IDKEYYIRNQILSPINRLCQYIEGTSAEKLSSCFNIY 1504

Query: 1288 PSKFQSKPSETMSSDPSSSLLFAVGDE--ERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
              K + K  + +  +   + + ++ +E  ER++                    VCS+ CM
Sbjct: 1505 DVK-EIKTDKQIEENYLETNVLSLLNESDERFKDIH------------LKGFLVCSN-CM 1550

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMC 1405
                   KP     F +  +C KC        +S   I N +        + +YK L +C
Sbjct: 1551 H----NVKPNI---FIKYFKCNKC-----LTYLSIEQIRNYIFSFIHHLCNTFYKQLYIC 1598

Query: 1406 DDETCKYTTCSLNLRLIGDAERGTVCPN----YPRCNGR--LVRKYTEADLYKQLTYFCH 1459
                     C+L  R I   +    CPN    Y + + +  + +KY    +Y  L YF  
Sbjct: 1599 -------QGCTLKTRRIF-LKNDKNCPNINCEYNKNSLKPLISKKY----IYLILEYFLF 1646

Query: 1460 LL 1461
            LL
Sbjct: 1647 LL 1648



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 31/140 (22%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L ++  TR LT +SG +W ++L    ++RVE+ LLH +  KK+I P          + K+
Sbjct: 959  LQIIEKTRDLTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITP----------LIKK 1008

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            R+      + +E  TN+              K K    Y GGLVL+P  G YD ++L LD
Sbjct: 1009 RT------KKIE--TNQ-------------MKNKNTAKYLGGLVLDPLCGYYDTFVLYLD 1047

Query: 913  FNSLYPSIIQEYNICFTTVE 932
            FNSLYPSII EYN+CF+T++
Sbjct: 1048 FNSLYPSIIIEYNVCFSTLK 1067



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 617 GFNKEATDRNSKAGSNVLCCE--SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
           G +++ + + +    N   C+   +E+ LL+  + ++  LD D+ +G+NI  FDL+ L+H
Sbjct: 650 GISRKCSKKGTMYNYNKTLCKLFDNEKELLHTFLEKIKDLDIDIYIGYNILNFDLEFLIH 709

Query: 675 RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
           R  V  + S + S+  ++K++E  K+ K      +G+   I+  I GRL+ D +L  +D 
Sbjct: 710 RCNVHNLNSYILSRKKKMKKNEKMKVNKFNGTNSTGSMYNIIQNIKGRLIVDIYLLCKDS 769

Query: 735 LREVSYSLTQLAKTQLNK 752
           ++  +Y L ++     NK
Sbjct: 770 IKLTTYCLDEIIDHVKNK 787


>gi|429961811|gb|ELA41355.1| DNA polymerase (pol2) [Vittaforma corneae ATCC 50505]
          Length = 933

 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 184/572 (32%), Positives = 270/572 (47%), Gaps = 133/572 (23%)

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
            E DA   +++   ++ L L +++  ISG L  + L   RA+R+EY L+H   A  Y+ P 
Sbjct: 274  EGDAKALVDIAESMNALSLAKEMAEISGYLLNRCLGNCRAERIEYTLMHELYAGGYLFPP 333

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                                          K    Y+GGLVL+P
Sbjct: 334  V-------------------------------------------TPKMNVKYSGGLVLDP 350

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------------PDGLVPHLPS 944
             +G Y+  +LLLDFNSLYPSIIQE+N+CF+TV  S               P+ +V  +  
Sbjct: 351  VQGFYEDIVLLLDFNSLYPSIIQEFNVCFSTVGSSRFYITEDNAEDVLNNPE-IVSSVAD 409

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
                  LP +L++LV+RRR VK  +++A S  +   LDI+Q+ALKLTANS+YGCLGF+ S
Sbjct: 410  RHADTFLPRILRSLVRRRRSVKELLRSAKSPEERMALDIRQRALKLTANSIYGCLGFTGS 469

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI----DDIAKAKA 1059
            RF    +A  IT +GRE+L  T  +    L ++VIYGDTDSIMIH+      +   +A  
Sbjct: 470  RFCNFEMAAFITAKGRELLNET-KIAAEQLGMKVIYGDTDSIMIHTRYPGTKEYYGRAVD 528

Query: 1060 IAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
             A  ++ ++N +Y  + I+L+ ++K++LL  KKKYAA+       M    IE KG+D+VR
Sbjct: 529  SAKALVSKINSRYSSIGIELEKVFKKLLLYTKKKYAALVFD----MNGSCIETKGIDIVR 584

Query: 1120 RDWSLLSKEVGDFCLSQILSERS--------------------------------CEDVV 1147
            RD+   S ++    L+ +L +R                                  ED  
Sbjct: 585  RDFCSASTDLSRSVLNVMLEDREEYRSDVKTTSIAVNNPFDGCSAKTGRGVGINLLEDSD 644

Query: 1148 ES---------IHNSLMKVQE-------DMRSGQVA--LEKYVITKTLTKPPEAYPDAKN 1189
            E+           N+ M+  E       D  S   A  +E ++I+  L++   AY +A N
Sbjct: 645  EAGDKARCSALKKNNTMETAEKIYGICSDFYSTLFARPVEDFIISSVLSRDISAYTNATN 704

Query: 1190 QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKW 1249
             PHV +ALRL+ S   T     D V Y+I    G   G    I+ RA HPDE      K 
Sbjct: 705  LPHVNLALRLRASKNIT-YHQDDVVSYVI----GEGDGP---ISYRAYHPDE------KV 750

Query: 1250 MIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
             ID  YY   Q+ P + RL + +     E++ 
Sbjct: 751  KIDYQYYIKNQLLPSLYRLVSLLSFVHTEKIG 782


>gi|13177606|gb|AAK14825.1| DNA polymerase alpha [Plasmodium falciparum]
          Length = 1855

 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 272/542 (50%), Gaps = 72/542 (13%)

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +LK+LV++R ++K  +       K + L IQ  ++KL +NS+YGCLG +N+RFYA
Sbjct: 1150 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLLIQSLSIKLISNSIYGCLGNTNNRFYA 1209

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG-----IDDIAKAKAIAG 1062
            K +A  IT +GR +L+ T   V+   NL+VIYGDTDSIMI +G     I++  ++  +A 
Sbjct: 1210 KHIASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFKLAH 1269

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
             +   +NK YK LE+DL+ ++ ++LLLKKKKYA  KV   +   YE  E KG++ ++RD+
Sbjct: 1270 LIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDNNLEKYEY-EMKGINFIKRDF 1328

Query: 1123 SLLSKEVGDFCLSQILSERSCE----------DVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            S +SK +G+  L  I + R  +          D+ E IH  L  + + +++ +  L+ Y+
Sbjct: 1329 SKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDLDYYI 1388

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS-----SG 1227
            ITK LTK    Y D  +  HV VA R+ + GY+        + Y +C  +  S     + 
Sbjct: 1389 ITKKLTKNVHEYQDKNSLGHVLVAERMIKDGYNI--CVNKEIQYCVCTSEDASRFYKKTS 1446

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
              +  +Q     +E+KK + K  ID +YY   QI   ++RLC  IEGTS E+L+ C  + 
Sbjct: 1447 EKLNNSQCCFSINEIKKYNLK--IDKEYYIRNQILSPINRLCQYIEGTSAEKLSSCFNIY 1504

Query: 1288 PSKFQSKPSETMSSDPSSSLLFAVGDE--ERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
              K + K  + +  +   + + ++ +E  ER++                    VCS+ CM
Sbjct: 1505 DVK-EIKTDKQIEENYLETNVLSLLNESDERFKDIH------------LKGFLVCSN-CM 1550

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMC 1405
                   KP     F +  +C KC        +S   I N +        + +YK L +C
Sbjct: 1551 H----NVKPNI---FIKYFKCNKC-----LTYLSIEQIRNYIFSFIHHLCNTFYKQLYIC 1598

Query: 1406 DDETCKYTTCSLNLRLIGDAERGTVCPN----YPRCNGR--LVRKYTEADLYKQLTYFCH 1459
                     C+L  R I   +    CPN    Y + + +  + +KY    +Y  L YF  
Sbjct: 1599 -------QGCTLKTRRIF-LKNDKNCPNINCEYNKNSLKPLISKKY----IYLILEYFLF 1646

Query: 1460 LL 1461
            LL
Sbjct: 1647 LL 1648



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 31/140 (22%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L ++  TR LT +SG +W ++L    ++RVE+ LLH +  KK+I P          + K+
Sbjct: 959  LQIIEKTRDLTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITP----------LIKK 1008

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            R+      + +E  TN+              K K    Y GGLVL+P  G YD ++L LD
Sbjct: 1009 RT------KKIE--TNQ-------------MKNKNTAKYLGGLVLDPLCGYYDTFVLYLD 1047

Query: 913  FNSLYPSIIQEYNICFTTVE 932
            FNSLYPSII EYN+CF+T++
Sbjct: 1048 FNSLYPSIIIEYNVCFSTLK 1067



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 617 GFNKEATDRNSKAGSNVLCCE--SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
           G +++ + + +    N   C+   +E+ LL+  + ++  LD D+ +G+NI  FDL+ L+H
Sbjct: 650 GISRKCSKKGTMYNYNKTLCKLFDNEKELLHTFLEKIKDLDIDIYIGYNILNFDLEFLIH 709

Query: 675 RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
           R  V  + S + S+  ++K++E  K+ K      +G+   I+  I GRL+ D +L  +D 
Sbjct: 710 RCNVHNLNSYILSRKKKMKKNEKMKVNKFNGTNSTGSMYNIIQNIKGRLIVDIYLLCKDS 769

Query: 735 LREVSYSLTQLAKTQLNK 752
           ++  +Y L ++     NK
Sbjct: 770 IKLTTYCLDEIIDHVKNK 787


>gi|124505377|ref|XP_001351430.1| DNA polymerase alpha [Plasmodium falciparum 3D7]
 gi|8248757|emb|CAB62892.2| DNA polymerase alpha [Plasmodium falciparum 3D7]
          Length = 1912

 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 272/542 (50%), Gaps = 72/542 (13%)

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +LK+LV++R ++K  +       K + L IQ  ++KL +NS+YGCLG +N+RFYA
Sbjct: 1207 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLLIQSLSIKLISNSIYGCLGNTNNRFYA 1266

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSG-----IDDIAKAKAIAG 1062
            K +A  IT +GR +L+ T   V+   NL+VIYGDTDSIMI +G     I++  ++  +A 
Sbjct: 1267 KHIASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFKLAH 1326

Query: 1063 KVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
             +   +NK YK LE+DL+ ++ ++LLLKKKKYA  KV   +   YE  E KG++ ++RD+
Sbjct: 1327 LIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDNNLEKYEY-EMKGINFIKRDF 1385

Query: 1123 SLLSKEVGDFCLSQILSERSCE----------DVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            S +SK +G+  L  I + R  +          D+ E IH  L  + + +++ +  L+ Y+
Sbjct: 1386 SKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDLDYYI 1445

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS-----SG 1227
            ITK LTK    Y D  +  HV VA R+ + GY+        + Y +C  +  S     + 
Sbjct: 1446 ITKKLTKNVHEYQDKNSLGHVLVAERMIKDGYNI--CVNKEIQYCVCTSEDASRFYKKTS 1503

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLD 1287
              +  +Q     +E+KK + K  ID +YY   QI   ++RLC  IEGTS E+L+ C  + 
Sbjct: 1504 EKLNNSQCCFSINEIKKYNLK--IDKEYYIRNQILSPINRLCQYIEGTSAEKLSSCFNIY 1561

Query: 1288 PSKFQSKPSETMSSDPSSSLLFAVGDE--ERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
              K + K  + +  +   + + ++ +E  ER++                    VCS+ CM
Sbjct: 1562 DVK-EIKTDKQIEENYLETNVLSLLNESDERFKDIH------------LKGFLVCSN-CM 1607

Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMC 1405
                   KP     F +  +C KC        +S   I N +        + +YK L +C
Sbjct: 1608 H----NVKPNI---FIKYFKCNKC-----LTYLSIEQIRNYIFSFIHHLCNTFYKQLYIC 1655

Query: 1406 DDETCKYTTCSLNLRLIGDAERGTVCPN----YPRCNGR--LVRKYTEADLYKQLTYFCH 1459
                     C+L  R I   +    CPN    Y + + +  + +KY    +Y  L YF  
Sbjct: 1656 -------QGCTLKTRRIF-LKNDKNCPNINCEYNKNSLKPLISKKY----IYLILEYFLF 1703

Query: 1460 LL 1461
            LL
Sbjct: 1704 LL 1705



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 31/140 (22%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L ++  TR LT +SG +W ++L    ++RVE+ LLH +  KK+I P          + K+
Sbjct: 1016 LQIIEKTRDLTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITP----------LIKK 1065

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            R+      + +E  TN+              K K    Y GGLVL+P  G YD ++L LD
Sbjct: 1066 RT------KKIE--TNQ-------------MKNKNTAKYLGGLVLDPLCGYYDTFVLYLD 1104

Query: 913  FNSLYPSIIQEYNICFTTVE 932
            FNSLYPSII EYN+CF+T++
Sbjct: 1105 FNSLYPSIIIEYNVCFSTLK 1124



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 617 GFNKEATDRNSKAGSNVLCCE--SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
           G +++ + + +    N   C+   +E+ LL+  + ++  LD D+ +G+NI  FDL+ L+H
Sbjct: 701 GISRKCSKKGTMYNYNKTLCKLFDNEKELLHTFLEKIKDLDIDIYIGYNILNFDLEFLIH 760

Query: 675 RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
           R  V  + S + S+  ++K++E  K+ K      +G+   I+  I GRL+ D +L  +D 
Sbjct: 761 RCNVHNLNSYILSRKKKMKKNEKMKVNKFNGTNSTGSMYNIIQNIKGRLIVDIYLLCKDS 820

Query: 735 LREVSYSLTQLAKTQLNK 752
           ++  +Y L ++     NK
Sbjct: 821 IKLTTYCLDEIIDHVKNK 838


>gi|396082048|gb|AFN83661.1| DNA polymerase catalytic subunit delta [Encephalitozoon romaleae
            SJ-2008]
          Length = 959

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 186/665 (27%), Positives = 326/665 (49%), Gaps = 84/665 (12%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            G+NV   +S E+ LL        ++D D++VG+NI GFD+  +L R +V  + +  +S +
Sbjct: 233  GANVYWYDS-EKELLESWKKYFMEIDPDIIVGYNIKGFDIPYILDRGEVLGINN--FSIL 289

Query: 690  GR-LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            GR  K+++         +FGS ++  +   I GRL+ D  +  R   +  SYSL  ++  
Sbjct: 290  GRSRKKAKTRDTTMSSNMFGSISTTEVE--IDGRLIVDMMIVIRRDYKLRSYSLNSVSIH 347

Query: 749  QLNKDRKEVGPHDVLKM-FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
             L + +++V P  + ++  +  ++   +  Y   D  L + L   L+VL    +L+ ++G
Sbjct: 348  FLKEQKEDVPPSSIGELQSKDKDTRRRIASYCLRDTVLPLRLFSTLNVLINYTELSRVTG 407

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                       A ++  L+      + +IVP                             
Sbjct: 408  VPIEYFFTRGTAIKIFALIYRTAAKEDFIVP----------------------------- 438

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             E   F+++ S            + GG V+EPK+G Y+K + ++DF+SLYPSI+   N+C
Sbjct: 439  -EIDPFESNKS------------FEGGFVIEPKRGFYNKPVSVMDFSSLYPSIMISNNLC 485

Query: 928  FTTV-----ERSPDGL-VP---HLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKI 977
            +TT+      R   G+  P   +  S++T  G+LP +L +L+  R+ +K  +K      +
Sbjct: 486  YTTLLTKEQYRVLGGIKTPTDNYFCSAETKKGLLPRILIDLLDSRKRIKEELKKEKDPAL 545

Query: 978  QQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
            +  L+ +Q A+KL ANS+YG  G S  R     +++ +T  GRE++  T +L++ N + +
Sbjct: 546  KACLNGRQLAVKLCANSLYGFTGASKGRLPCFEISQSVTGFGREMINFTKNLIEENFSKK 605

Query: 1037 --------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                    VIYGDTDS+MI    +DI K   ++ ++ + +  K+ K + ++ + +Y   L
Sbjct: 606  NGYTHDSVVIYGDTDSVMIDFNEEDIGKVFEMSKEISRFITTKFVKPVSLEFEKVYYPYL 665

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +     D  P + I+ +G++ VRRD   L KEV +  L  IL +R+    V
Sbjct: 666  LINKKRYAGLLYSNPDS-PSK-IDTRGIETVRRDNCGLVKEVVETVLEMILYQRN----V 719

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E     +  V  D+  G++ L   VI+K+LTK  + Y     Q HV++A +L++   ST 
Sbjct: 720  EKAKRFVKSVVGDLYLGRIDLSLLVISKSLTKTGDKY--GSKQAHVELAEKLRKRDESTA 777

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD VPY+I  ++G       G+A   +  D +   +    ID +YY  QQ+   + R
Sbjct: 778  PVLGDRVPYVI-VKKGK------GMAAYEKSEDPVYVLENNLPIDTEYYIEQQLSKPLKR 830

Query: 1268 LCASI 1272
            +   I
Sbjct: 831  IFDPI 835


>gi|294496641|ref|YP_003543134.1| replicative DNA polymerase I [Methanohalophilus mahii DSM 5219]
 gi|292667640|gb|ADE37489.1| replicative DNA polymerase I [Methanohalophilus mahii DSM 5219]
          Length = 918

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 189/696 (27%), Positives = 324/696 (46%), Gaps = 120/696 (17%)

Query: 631  SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
            ++V  C+  E ++L+R      + D DV+ G+N + FD+  +  R        S+ +K G
Sbjct: 230  TDVETCQD-EASMLSRFFEIFREYDPDVVTGYNSNDFDIPYVTDRV-------SILNKNG 281

Query: 691  RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
                S++   R GR++         M  I GR + D     R       Y+L  ++   L
Sbjct: 282  HRIISDVG--RDGRSLAYRKIGTRTMVDITGRAVVDVLPLIRQEFSLKRYTLRNVSHELL 339

Query: 751  NKDRKEVGPHDVLKMFQTLES-LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
             K++ +V P D+ + ++   + L E I Y   D+ L++EL+  L +L     ++ +SG L
Sbjct: 340  GKEKLDVSPQDMEEYWEDDGAKLYEFINYARRDSELALELLMQLKLLDKHIAVSQVSGTL 399

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
                + G +   VE LLL                          S +G ++R +    +E
Sbjct: 400  LQDVISGGQTNMVEQLLL--------------------------SEYGKQNRVMSSKPDE 433

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                     H   ++ K      GG VLEP KGL++  +L+LD+ SLYP+II  +N+C+T
Sbjct: 434  ---------HTSQQRRKLNENLKGGAVLEPHKGLHEN-VLVLDYKSLYPTIIMAHNLCYT 483

Query: 930  TVER-----------SPDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASG 974
            TV             SP G   + PHL      G++P +L++L++RR   K  MK T   
Sbjct: 484  TVVEDTNLKTDDLIISPTGDKFVKPHL----YKGIVPSVLEDLLRRRSETKQIMKKTRDE 539

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV----- 1029
             + + LD  Q ALK+  NS YG  G++ +R Y+  +A  +T  GRE +  T ++V     
Sbjct: 540  NQHRVLDATQLALKILLNSFYGYSGYARARLYSLGMAGSVTSIGRENIARTEEIVCSQIG 599

Query: 1030 ---------------------QNNLNLEVIYGDTDSIMIHS--------GIDDIA--KAK 1058
                                    +NL ++YGDTDS+ +H           DD+   ++ 
Sbjct: 600  SVVLRNDEVYFRDEAGEIGSDDKKVNLSIVYGDTDSVFVHCMDRDNRELSPDDLTLEESA 659

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  KV   V       +E++ +   +R+LL+ KK+YA    +  +G   + I+ KGL+ 
Sbjct: 660  RVGSKVASLVTASLPDPMELEFEATARRVLLVAKKRYAQWLFEPAEGGWKDKIKVKGLET 719

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKT 1176
            VRRDW  L+  + +  L  +L E + E  VE +  ++ +V+  D+      ++  V+TKT
Sbjct: 720  VRRDWCELTSNMLNRVLEYVLKEGNVEKAVEHVKTTVDRVRNLDVTRDSDIIDDLVLTKT 779

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQGTSSGSSVGIAQ 1234
             +K P +Y +   QPH+ V  +++Q    TG   S G+ +P++I       +G  +    
Sbjct: 780  FSKSPSSYKN--KQPHLTVVEKIEQ---RTGMRPSIGERIPFVIV------AGKDL-FVN 827

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            RA  PD +++ +    +D+DYY  +Q+ P V R+ +
Sbjct: 828  RAEDPDYVRQHN--IALDVDYYIQKQLLPPVERILS 861


>gi|303390605|ref|XP_003073533.1| DNA polymerase catalytic subunit delta [Encephalitozoon intestinalis
            ATCC 50506]
 gi|303302680|gb|ADM12173.1| DNA polymerase catalytic subunit delta [Encephalitozoon intestinalis
            ATCC 50506]
          Length = 959

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 215/771 (27%), Positives = 356/771 (46%), Gaps = 112/771 (14%)

Query: 526  KYEITVDSPKDIRVSSSSKHVAEVPPVTVTAI--NLKTVFNKRQDVNEIVSASVVCCHKA 583
            KYE+     K + VS+S + +  +PPV V AI   LK +        +I   S+     +
Sbjct: 145  KYEVL--DGKYLTVSTSYESLEPLPPVGVYAILPPLKVL------SLDIECVSIGNAFPS 196

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERAL 643
                P++    +    L+ F   + L   IF +   KE T      G NV   E+ E+ L
Sbjct: 197  SKTDPII----QIGNTLTMFGSDKYLSQDIFCL---KETT---GIPGVNVHWYET-EKEL 245

Query: 644  LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKG 703
            L        +LD D+++G+N+ GFDL  +L R +V  + +  +S +GR K+    K R  
Sbjct: 246  LESWKKYFMELDPDIIIGYNVKGFDLPYILGRGEVLGIEN--FSILGRSKK----KARTR 299

Query: 704  RTIFGSGASPGIMSC---IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPH 760
             T   S     IM+    I GRL+ D  +  R   +  SYSL  ++     K++KE  P+
Sbjct: 300  DTTMSSNMFGSIMTTEVEIEGRLIIDMMVVIRRDFKLRSYSLNSVS-IHFLKEQKEDVPY 358

Query: 761  DVLKMFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGAR 818
              +   Q+ +  +   +  Y   D  L + L   L+VL    +L+ ++G           
Sbjct: 359  SSIGELQSKDKDTRRRIASYCLRDTVLPLRLFSKLNVLINYAELSRVTGVPIEYFFTRGT 418

Query: 819  AQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
            A ++  L+      + ++VP                              E   F++   
Sbjct: 419  AIKIFALIYRTASKEGFVVP------------------------------ETDPFES--- 445

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------ 932
                     G  Y GG V+EPKKG Y K I ++DF SLYPSI+  +N+C+TT+       
Sbjct: 446  ---------GKKYEGGFVIEPKKGFYGKPISVMDFTSLYPSIMISHNLCYTTLLTKDQYR 496

Query: 933  -----RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQA 986
                 R+P       P  K  G+LP +L +L+  R+ +K  +K      ++  L+ +Q A
Sbjct: 497  ILGGIRTPTDNYFCSPERK-KGLLPRILVDLLDSRKKIKEELKKEKDPAVKACLNGKQLA 555

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VI 1038
            +KL ANS+YG  G S  +     +++ +T  GRE++  T  L++ N + +        VI
Sbjct: 556  VKLCANSLYGFTGASKGKLPCFEISQSVTGFGREMIMLTKKLIEENFSKKNGYTHDSVVI 615

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAV 1097
            YGDTDS+MI+   +DI K   ++ ++ + V  K+ K + ++ + +Y   LL+ KK+YA  
Sbjct: 616  YGDTDSVMINFDEEDIKKVFEMSKEISEFVTSKFMKPVSLEFEKVYYPYLLINKKRYAG- 674

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
             + + +      I+ KG++ VRRD   L KE  +  L  IL E++ E   + + +    V
Sbjct: 675  -LLYSNPNTASKIDTKGIEAVRRDNCGLVKETVETVLEMILHEKNVEKAKQFVRD----V 729

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
              D+  G++ L   VI+K+LTK  E Y     Q HV++A +L++   +T    GD VPY+
Sbjct: 730  VRDLYLGRIDLSLLVISKSLTKSGEKY--GSRQAHVELAEKLRKRDETTAPVLGDRVPYV 787

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            I  ++G       GIA   +  D +   +    ID +YY  QQ+   + R+
Sbjct: 788  I-VKKGK------GIAAYEKSEDPVYVLENNLPIDTEYYIEQQLSKPMERI 831


>gi|323454621|gb|EGB10491.1| hypothetical protein AURANDRAFT_23037 [Aureococcus anophagefferens]
          Length = 1057

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 201/753 (26%), Positives = 332/753 (44%), Gaps = 113/753 (15%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  LL +    +  +D D++ G+N   FD+  LL RAQ  +   +  +    L R    
Sbjct: 314  TEPELLKKWAAFVRLVDPDIITGYNTQNFDIPYLLKRAQTLKRKDASLAAFSELGRVLGS 373

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
              R   T   S   G    + + + GR++ D         +  SYSL  +    L   ++
Sbjct: 374  HARMRDTSIQSAQMGKRENVETTVDGRVMFDLLPYMFRNHKLSSYSLNSVCAEFLGSQKE 433

Query: 756  EVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q  T E    L  Y   D++L ++LM  L+VL    ++  ++G      
Sbjct: 434  DVH-HSIIADLQRGTDEDRRRLAVYCLKDSYLVIQLMTKLAVLINYVEMARVTGVPLDFL 492

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V  +LL   RA   +VP+         +AK    HG          + DA F
Sbjct: 493  LSRGQQIKVFSMLLRRCRASNLLVPN---------LAK----HG---------NDGDAKF 530

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
            +                  G  V+EPKK  Y++ I  LDF SLYPSI+Q YN+C++T+  
Sbjct: 531  E------------------GATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTILT 572

Query: 932  ----ERS-PDGL-------------VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTA 972
                ER  P G              V H  ++KT  GVLP++L +L+  R+  K  MK A
Sbjct: 573  KQDAERHFPGGADTAYQAGPQCVDGVHHFVTAKTKRGVLPQILADLLAARKRAKADMKKA 632

Query: 973  SGLKIQQL-DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            +    + + + +Q ALK++ANS+YG  G +  +    P+A  +T  GR +L  T D V++
Sbjct: 633  TDPMDKAVQNGRQLALKISANSVYGFTGAAVGQLPCLPIASTVTAYGRTLLHRTKDFVES 692

Query: 1032 NL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGL 1082
                      + EV+YGDTDS+M++ G  D+A     A  V  EV K +   ++++ + +
Sbjct: 693  TYTKENGYAADAEVVYGDTDSVMVNFGFGDVAATLPKAEVVAAEVTKIFPPPVKLEFEKV 752

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            Y   LL+ KK+YA +     +   Y  ++ KGL+ VRRD  LL +++ D CL +I+ ER 
Sbjct: 753  YFPYLLMNKKRYAGLLWTRPETHDY--MDCKGLETVRRDNCLLVRQLIDGCLRKIIIERD 810

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
                +     ++     D+   ++ +   VITK+L+K  ++        H ++A R++  
Sbjct: 811  TNAAIAYAKRAI----GDLLQNKIDISLLVITKSLSKEADSKDYKAKSGHAELAKRMRAR 866

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
               T  + GD VPY+I         +  G A   +  D +   +    ID  YY   Q+ 
Sbjct: 867  DPGTAPNVGDRVPYVIV-------QAPKGTATYDKSEDPVYVLENNLPIDASYYLENQLS 919

Query: 1263 PVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEP 1322
              ++R+   I   +    ++ L  D ++  +KP+          ++FA            
Sbjct: 920  KPLTRIFEPIIPNT----SNLLHGDHTRVVAKPTPVARK--GGIMMFAKKQ--------- 964

Query: 1323 LILSCPSCSSTFDCPAVCSSICMSVSEKPSKPE 1355
              L C  C +  D   VC         KP +PE
Sbjct: 965  --LQCLGCKAKIDEGTVCDHC------KPREPE 989


>gi|328720536|ref|XP_001948892.2| PREDICTED: DNA polymerase delta catalytic subunit-like [Acyrthosiphon
            pisum]
          Length = 1093

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 190/678 (28%), Positives = 314/678 (46%), Gaps = 92/678 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+ CE  E  +L +    + + D D++ G+NI+ FDL  LL+RA+   + +  ++ 
Sbjct: 352  VGSQVISCEK-ENTMLEKWAAFVRECDPDIITGYNINNFDLPYLLNRAK--HLHTKNFNF 408

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+K  +     +       G        I GR+  D +L      +  SYSL  ++  
Sbjct: 409  LGRIKDIQSVIREQVLQSKQMGRRENKSVNIDGRVPFDLYLVLVRDYKLRSYSLNSVSYH 468

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  T ++   L  Y   DA+L ++L+  L  L    ++  ++
Sbjct: 469  FLQEQKEDVH-HSIITDLQNGTPQTRRRLAVYCLKDAFLPLKLLDKLMCLINYMEMARVT 527

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G   G  L G +  +V   LL   + K YI+P          MA      G++D   E  
Sbjct: 528  GVPLGSLLTGGQQAKVVSQLLRLAQEKNYIMP---------TMAG-----GMQDEQFE-- 571

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                      G  V+EP KG Y   I  LDF SLYPSI+  +N+
Sbjct: 572  --------------------------GATVIEPIKGYYADPIATLDFTSLYPSIMMAHNL 605

Query: 927  CFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            C+TT+                 ++P G    L +S   G+LPE+L+NL+  R+  KT +K
Sbjct: 606  CYTTLLSQKTINLLNLSENDYTKTPSGSY-FLSNSIRKGLLPEILENLLSARKKAKTDLK 664

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
            + +   KI+ LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V
Sbjct: 665  SETDPFKIKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISTSVTSYGRTMIERTKQEV 724

Query: 1030 QNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +    +         VIYGDTDS+M+  G+  I KA  +  +  + V  K+ K +++D +
Sbjct: 725  EQKYCIANGYEHDAVVIYGDTDSVMVKFGVKSIEKAMELGREAAEYVTTKFIKPIKLDFE 784

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD S L   + + CL ++L +
Sbjct: 785  KVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNSPLVSNMINTCLQKLLID 842

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  +  V        +V  D+   ++ + + VITK LTK    Y     Q HV++++++K
Sbjct: 843  RDPDGAVAYAK----EVISDLLCNRIDISQLVITKELTK--NDY--TAKQAHVELSIKMK 894

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +         GD +PYI+    GT    +    QRA  P  +   +    ID +YY   Q
Sbjct: 895  KRDPGNAPKLGDRIPYILIT--GTKGSPAY---QRAEDP--IFVLENNIPIDFNYYLENQ 947

Query: 1261 IHPVVSRLCASIEGTSPE 1278
            +   + R+ + I G   E
Sbjct: 948  LSKPLVRIFSPILGDKAE 965


>gi|268557320|ref|XP_002636649.1| Hypothetical protein CBG23360 [Caenorhabditis briggsae]
          Length = 1081

 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 202/835 (24%), Positives = 385/835 (46%), Gaps = 126/835 (15%)

Query: 481  NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIR 538
            N  +L  ++ +A+ +FL K  + G  W+ I   K    P  ++ S C+ E++++  K++ 
Sbjct: 208  NVGNLYESNINAVVMFLAKTNIAGCGWIEIPAGKCKILPNSEKSSRCQIEVSINV-KNLI 266

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
            V  S    A + P+   +++++ +  +R    E +   ++           +A+  K  G
Sbjct: 267  VHESDGEWAGIAPIRTLSLDIECI-GRRGIFPEAIKDPII----------QIANLVKVEG 315

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
                F  VR      F +G            GSN++ C  +E+ LL +    + ++D D+
Sbjct: 316  ESEPF--VRNC----FVLGTCAHVV------GSNIIEC-VNEKVLLEKWAEFVREVDPDI 362

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            + G+NI  FDL  +L RA+V  +P    S +GR +        KG  +  +  S   M  
Sbjct: 363  ITGYNILNFDLPYILDRAKVLSLPQV--SHLGRQRD-------KGSVVRDAAISSKQMGS 413

Query: 719  -------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TL 769
                   I GR++ D         +  SY+L  ++   L++ +++V  H+++   Q    
Sbjct: 414  RVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNIIPDLQRGDE 472

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            ++   L +Y   DA+L + L+  L  +    ++  ++G      L   +  ++  ++L  
Sbjct: 473  QTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRR 532

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             +   + +P                        V E  + D                 G 
Sbjct: 533  CKQNNFFLP------------------------VIEANSGD-----------------GE 551

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPS- 944
             Y G  V++P +G Y++ I  LDF SLYPSI+  +N+C+TT+ +SP G+        PS 
Sbjct: 552  GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENKDYIRTPSG 611

Query: 945  ------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
                  SK  G+LPE+L++L+  R+  K  MK      K    + +Q ALK++ANS+YG 
Sbjct: 612  QYFATKSKRRGLLPEILEDLLAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGF 671

Query: 998  LGFSNSRFYAKPLAELITQQGREIL---RSTVDLVQNNLNLE--------VIYGDTDSIM 1046
             G +  +     +++ +T  GR+++   +S V+ +     L+        VIYGDTDS+M
Sbjct: 672  TGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALDGKCPADAKVIYGDTDSVM 731

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            +  G++++A+A  I  +  +EV+K +   ++++ + +Y   LL+ KK+YA   + F    
Sbjct: 732  VKFGVENVAQAMEIGLEAAKEVSKIFTPPIKLEFEKVYFPYLLINKKRYAG--LYFTKPE 789

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
             ++ ++ KGL+ VRRD   L  +V   CL ++L +R  +  ++    ++     D+   +
Sbjct: 790  VHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIDRDQQSALDFAKKTI----SDLLCNK 845

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            + +   +I+K LTK  + Y     Q HV++A R+K+    +    GD VPY+       +
Sbjct: 846  IDISLLIISKELTKSGDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYVF-----VA 898

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            +  +V   +RA  P  + + +    +D  +Y + Q+   ++R+   I G   E++
Sbjct: 899  AAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 951


>gi|301030555|gb|ADK47977.1| type B polymerase [Thermococcus litoralis]
          Length = 774

 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 177/647 (27%), Positives = 295/647 (45%), Gaps = 92/647 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+ER ++ R +  + + D DV++ +N   FDL  L+ RA+   V   +    GR K +  
Sbjct: 185  SNEREMIKRFVQVVKEKDPDVIITYNGDNFDLPYLIKRAEKLGVRLVL----GRDKENPE 240

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           I GR+  D F   R  +   +Y+L  + +  L K + ++
Sbjct: 241  PKIQRMGDSFAVE--------IKGRIHFDLFPVVRRTINLPTYTLEAVYEAVLGKTKSKL 292

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
            G  ++  +++T ES+ +L +Y   DA  + EL       P+  +L  + G       + +
Sbjct: 293  GAEEIAAIWETEESMKKLAQYSMEDARATYEL--GKEFFPMEAELAKLIGQSVWDVSRSS 350

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 351  TGNLVEWYLLRVAYERNELAPNK------------------------------------- 373

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
               +  K +    Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+E+    
Sbjct: 374  PDEEEYKRRLRTTYLGGYVKEPEKGLWEN-IIYLDFRSLYPSIIVTHNVSPDTLEKEGCE 432

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQALK 988
                +P  +V +       G +P +L +L+  R+ +K  MK T   ++ + LD +Q+A+K
Sbjct: 433  NYDIAP--IVSYRFCKDFPGFIPSILGDLIAMRQEIKKKMKATIDPVERKMLDYRQRAVK 490

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM-- 1046
            L ANS YG +G+  +R+Y+K  AE +T  GR  +  T+  ++     +V+Y DTD     
Sbjct: 491  LLANSYYGYMGYPKARWYSKECAESVTAWGRHYIEMTIKEIEEKFGFKVLYADTDGFYAT 550

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            I     +I K K  A + +  +N K    LE++ +G Y R   + KK+YA +  + +   
Sbjct: 551  ISGEKPEIIKKK--AREFLNYINSKLPGLLELEYEGFYLRGFFVTKKRYAVIDEEGR--- 605

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                I  +GL++VRRDWS ++KE     L  IL + S E  VE + + L K+ +     +
Sbjct: 606  ----ITTRGLEVVRRDWSEIAKETQAKVLEAILKDGSVEKAVEIVRDVLEKIAK----YR 657

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V LEK VI + +T+  + Y      PHV +A RL   G       G  + YI+    G  
Sbjct: 658  VPLEKLVIHEQITRDLKDYKAI--GPHVAIAKRLAARG--IKVKPGTIISYIVLKGSGKI 713

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            S   + + +    P++ K        D DYY   Q+ P V R+  + 
Sbjct: 714  SDRVILLTE--YDPEKHK-------YDPDYYIENQVLPAVLRILEAF 751


>gi|348689|gb|AAA72101.1| DNA dependent DNA polymerase [Thermococcus litoralis]
          Length = 774

 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 176/645 (27%), Positives = 290/645 (44%), Gaps = 88/645 (13%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+ER ++ R +  + + D DV++ +N   FDL  L+ RA+   V   +    GR K    
Sbjct: 185  SNEREMIKRFVQVVKEKDPDVIITYNGDNFDLPYLIKRAEKLGVRLVL----GRDKEHPE 240

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           I GR+  D F   R  +   +Y+L  + +  L K + ++
Sbjct: 241  PKIQRMGDSFAVE--------IKGRIHFDLFPVVRRTINLPTYTLEAVYEAVLGKTKSKL 292

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
            G  ++  +++T ES+ +L +Y   DA  + EL       P+  +L  + G       + +
Sbjct: 293  GAEEIAAIWETEESMKKLAQYSMEDARATYEL--GKEFFPMEAELAKLIGQSVWDVSRSS 350

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL    A+  + P+K                                     
Sbjct: 351  TGNLVEWYLLRVAYARNELAPNK------------------------------------- 373

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
               +  K +    Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+E+    
Sbjct: 374  PDEEEYKRRLRTTYLGGYVKEPEKGLWEN-IIYLDFRSLYPSIIVTHNVSPDTLEKEGCK 432

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQALK 988
                +P  +V +       G +P +L +L+  R+ +K  MK T   ++ + LD +Q+A+K
Sbjct: 433  NYDVAP--IVGYRFCKDFPGFIPSILGDLIAMRQDIKKKMKSTIDPIEKKMLDYRQRAIK 490

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            L ANS YG +G+  +R+Y+K  AE +T  GR  +  T+  ++     +V+Y DTD     
Sbjct: 491  LLANSYYGYMGYPKARWYSKECAESVTAWGRHYIEMTIREIEEKFGFKVLYADTDGFYAT 550

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
               +     K  A + +  +N K    LE++ +G Y R   + KK+YA +  + +     
Sbjct: 551  IPGEKPELIKKKAKEFLNYINSKLPGLLELEYEGFYLRGFFVTKKRYAVIDEEGR----- 605

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
              I  +GL++VRRDWS ++KE     L  IL E S E  VE + +    V E +   +V 
Sbjct: 606  --ITTRGLEVVRRDWSEIAKETQAKVLEAILKEGSVEKAVEVVRD----VVEKIAKYRVP 659

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            LEK VI + +T+  + Y      PHV +A RL   G       G  + YI+    G  S 
Sbjct: 660  LEKLVIHEQITRDLKDYKAI--GPHVAIAKRLAARG--IKVKPGTIISYIVLKGSGKISD 715

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              + + +    P + K        D DYY   Q+ P V R+  + 
Sbjct: 716  RVILLTE--YDPRKHK-------YDPDYYIENQVLPAVLRILEAF 751


>gi|150403298|ref|YP_001330592.1| DNA polymerase Pol2 [Methanococcus maripaludis C7]
 gi|150034328|gb|ABR66441.1| DNA polymerase Pol2 [Methanococcus maripaludis C7]
          Length = 780

 Score =  206 bits (524), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 194/665 (29%), Positives = 314/665 (47%), Gaps = 115/665 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K D D++  +N   FD   L  RA+V      +  K+G  K  E  K
Sbjct: 199  EKELIKRI-IEILK-DYDIIYTYNGDNFDFPYLKKRAEVF----GLELKLG--KNDEKIK 250

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +   +  + +VG 
Sbjct: 251  ITKG----GINSK----SYIPGRVHIDLYPIARRLLNLTKYRLENVTEALFDVKKVDVGH 302

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+  L+    L+EY   DA+ + ++      LPL    + +         + + +
Sbjct: 303  ENIPKMWDNLDET--LVEYSYQDAYYTQKIGEQF--LPLEIMFSRVVNQSLYDINRMSSS 358

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL     K  I P                                    N  S 
Sbjct: 359  QMVEYLLLKNSYNKGVIAP------------------------------------NRPSG 382

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------R 933
             +++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +N+   T++       
Sbjct: 383  KEYQKRIRS-SYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCDNE 440

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-----IQQLDIQQQALK 988
              + ++ H    KT G++P+ L +L+ RR+ VK  +K  +  K      Q LD +Q+++K
Sbjct: 441  ENEEILGHKFCKKTIGIIPKTLMDLIDRRKSVKKILKEKAENKEFDEEYQILDYEQRSIK 500

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            + ANS YG L F  +R+Y++  AE+ T  GR+ ++ T++  + N   +VIY DTD    +
Sbjct: 501  VLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAE-NFGFKVIYADTDG--FY 557

Query: 1049 SGIDD---------IAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVK 1098
            S   D         + K K      ++ +N K    +E++ +G +KR + + KKKYA + 
Sbjct: 558  SKWADGKKLTRDELLEKTKTF----LKNINDKLPGEMELEFEGYFKRGIFVTKKKYALID 613

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
                     E I  KGL++VRRDWS +SK      L+ +L E S E+  + I +++    
Sbjct: 614  EN-------EKITVKGLEVVRRDWSNVSKNTQKSVLNALLKEGSVENAKKVIQDTI---- 662

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            +++++G V  E  +I   LTK  E Y      PHV+VA ++ +SG     + G+ + YII
Sbjct: 663  KELKNGNVKKEDLLIHTQLTKRIEDYKTT--SPHVEVAKKIIKSG--NRVNIGEVISYII 718

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
                  +SG+   I++RA  P E  K       D +YY   QI P V RL  ++ G + +
Sbjct: 719  ------TSGNK-SISERAE-PIETAKD-----YDTNYYIENQILPPVIRLMEAL-GITKD 764

Query: 1279 RLADC 1283
             L D 
Sbjct: 765  ELKDS 769


>gi|240103512|ref|YP_002959821.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus
            gammatolerans EJ3]
 gi|239911066|gb|ACS33957.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus
            gammatolerans EJ3]
          Length = 775

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 292/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGIKFTL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + +++ E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEITEAWESGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL+D  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P+  V H       G +P LL +L++ R+ +K  MK T   L+ + LD +Q+A+
Sbjct: 429  KEYDVAPE--VGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATIDPLEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GRE + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGREYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + ++ +N K    LE++ +G Y R   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLKYINAKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+    Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLRDY--KATGPHVAVAKRLAAKG--VKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPADEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748


>gi|324120742|dbj|BAJ78762.1| DNA polymerase delta catalytic subunit [Uroleucon nigrotuberculatum]
          Length = 1093

 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 189/678 (27%), Positives = 313/678 (46%), Gaps = 92/678 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+ CE  E  +L +    + + D D++ G+NI+ FDL  LL+RA+   + +  ++ 
Sbjct: 352  VGSQVISCEK-ENTMLEKWAAFVRECDPDIITGYNINNFDLPYLLNRAK--HLHTKNFNF 408

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+K  +     +       G        I GR+  D +L      +  SYSL  ++  
Sbjct: 409  LGRIKDIQSVIREQVLQSKQMGRRENKSVNIDGRVPFDLYLVLVRDYKLRSYSLNSVSYH 468

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  T ++   L  Y   DA+L ++L+  L  L    ++  ++
Sbjct: 469  FLQEQKEDVH-HSIITDLQNGTPQTRRRLAVYCLKDAFLPLKLLDKLMCLINYMEMARVT 527

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G   G  L G +  +V   LL   + K YI+P          MA      G++D   E  
Sbjct: 528  GVPLGSLLTGGQQAKVVSQLLRLAQEKNYIMP---------TMAG-----GMQDEQFE-- 571

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                      G  V+EP KG Y   I  LDF SLYPSI+  +N+
Sbjct: 572  --------------------------GATVIEPIKGYYADPIATLDFTSLYPSIMMAHNL 605

Query: 927  CFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            C+TT+                 ++P G    L +S   G+LPE+L+NL+  R+  KT +K
Sbjct: 606  CYTTLLSQKTINLLNLSENDYTKTPSGSY-FLSNSIRKGLLPEILENLLSARKKAKTDLK 664

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
            + +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V
Sbjct: 665  SETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISTSVTSYGRTMIERTKQEV 724

Query: 1030 QNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +    +         VIYGDTDS+M+  G+  I KA  +  +  + V  K+ K +++D +
Sbjct: 725  EQKYCIANGYEHDAVVIYGDTDSVMVKFGVKTIEKAMELGREAAEYVTTKFIKPIKLDFE 784

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD S L   + + CL ++L +
Sbjct: 785  KVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNSPLVSNMINTCLQKLLID 842

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  +  V        +V  D+   ++ + + VITK LTK    Y     Q HV++++++K
Sbjct: 843  RDPDGAVAYAK----EVISDLLCNRIDISQLVITKELTK--NDY--TAKQAHVELSIKMK 894

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +         GD +PYI+    GT    +    QRA  P  +   +    ID +YY   Q
Sbjct: 895  KRDPGNAPKLGDRIPYILIT--GTKGSPAY---QRAEDP--IFVLENNIPIDFNYYLENQ 947

Query: 1261 IHPVVSRLCASIEGTSPE 1278
            +   + R+ + I G   E
Sbjct: 948  LSKPLVRIFSPILGDKAE 965


>gi|91773640|ref|YP_566332.1| replicative DNA polymerase I [Methanococcoides burtonii DSM 6242]
 gi|91712655|gb|ABE52582.1| DNA polymerase B, delta subunit with exonuclease activity
            [Methanococcoides burtonii DSM 6242]
          Length = 910

 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 186/687 (27%), Positives = 319/687 (46%), Gaps = 119/687 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP-SSMWSKIGRLKRSEMP 698
            E  LLNR        D DV+ G+NI+ FD+  +  R ++     S++ S +GR  R+   
Sbjct: 231  ESDLLNRFFEIFRDYDPDVITGYNINDFDVPYITDRVKLLNESGSNINSAVGRDSRALSY 290

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            +    RT          M  I GR++ D+    R       Y+L  ++K  L +++ +V 
Sbjct: 291  RKVVTRT----------MVPIPGRVVVDSLPLIRQQFSLKRYTLRNVSKELLGREKLDVD 340

Query: 759  PHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              D+ + +  + E + + I+Y   D+ L++EL+  L +L     L+ +SG L   T+ G 
Sbjct: 341  AADMEEHWNDSGEKIRKFIDYSRRDSELALELLLDLKLLDKYIALSRVSGILLQDTVSGG 400

Query: 818  RAQRVEYLLLHAFRAKKYIV---PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            +   VE++LL  F  +  ++   PD     +ET   +++ N  ++               
Sbjct: 401  QTNMVEHILLTEFGKQGRVMSTKPD-----EETSSFRRKQNEDLK--------------- 440

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--- 931
                              GG VLEP+KGL+ K +++LD+ SLYP+I+  +N+C+TTV   
Sbjct: 441  ------------------GGAVLEPEKGLH-KNVIVLDYKSLYPTIMMAHNLCYTTVVPP 481

Query: 932  ERSPDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQ 983
             + P+  V   PS           G++P +L++L+ +R   K  MK AS   + Q LD  
Sbjct: 482  GKYPEDKVIRSPSKGEFVKPEVFKGIVPSVLESLLDKRIETKKLMKQASDEGEYQVLDAT 541

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN--------- 1034
            Q ALK+  NS YG  G++ +R Y+  +A  +T  GR  +  T D+V N +          
Sbjct: 542  QLALKILLNSFYGYSGYARARLYSLQMANSVTSIGRGNIARTQDIVCNRIGTVILRDNKA 601

Query: 1035 -----------------LEVIYGDTDSIMIH----------SGIDDIAKAKAIAGKVIQE 1067
                             L V YGDTDS+ +H           G+  +  +  +  KV   
Sbjct: 602  YLRDEVDELKDDDKAVKLSVAYGDTDSVFVHCKNDQDLEFEEGVFSLEDSALVGKKVASI 661

Query: 1068 VNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLS 1126
            V       +E++ +   KR+LL+ KK+YA    +  +G   + I+ KGL+ VRRDW  L+
Sbjct: 662  VTASLPDPMELEFEATAKRVLLIAKKRYAQWIFEPANGGWTDSIKVKGLETVRRDWCELT 721

Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPPEAYP 1185
             ++ +  L  +L E   E  VE +   + +V+  D+       E  V+TK  +K P +Y 
Sbjct: 722  SKMLNRVLELVLKEGDIEGSVEHVRTLVDRVRNLDVAKDSDLFEDLVLTKNFSKSPSSYK 781

Query: 1186 DAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            +   QPH+ V   +++    TG   + G+ +P++I   +G           RA  PD ++
Sbjct: 782  N--KQPHLTVVENIQR---RTGVRPAIGERIPFVIIAGRGL-------FVDRAEDPDYVR 829

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            + +   ++D+DYY  +Q+ P V R+ +
Sbjct: 830  ENN--VLLDVDYYIQKQMLPPVERILS 854


>gi|6015025|sp|P56689.1|DPOL_THEGO RecName: Full=DNA polymerase; AltName: Full=TO POL
 gi|4699806|pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
            Gorgonarius
          Length = 773

 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 292/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R++   V   +    GR      
Sbjct: 185  STEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFIL----GR--EGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + ++T E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWETGEGLERVARYSMEDAKVTYEL--GKEFFPMEAQLSRLVGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ VK  MK T   ++ + LD +Q+A+
Sbjct: 429  EEYDVAPQ--VGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GR+ + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + +  +N K    LE++ +G YKR   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDEEDK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIYEQITRDLKDY--KATGPHVAVAKRLAARG--IKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPAKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|333910025|ref|YP_004483758.1| DNA polymerase Pol2 [Methanotorris igneus Kol 5]
 gi|333750614|gb|AEF95693.1| DNA polymerase Pol2 [Methanotorris igneus Kol 5]
          Length = 781

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 186/661 (28%), Positives = 304/661 (45%), Gaps = 112/661 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K + D++  +N   FD   L  RA+V  +  ++              
Sbjct: 198  EKELIERI-IEILK-NYDIIYTYNGDNFDFPYLKKRAEVYGIKLNLG------------- 242

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
             R G  I  S     + S I GR+  D +  +R LL    Y L  +A       + EVG 
Sbjct: 243  -RDGEEIKISKGGMHLRSYIPGRVHIDLYSIARRLLHLTKYKLEDVALELFGVKKLEVGH 301

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ K+++  E+  +LIEY   DA  + ++  +   LPL    + I      +  + + +
Sbjct: 302  QNIGKLWE--ENDEKLIEYSFQDALYTFKIGEYF--LPLEVMFSRIVNQTLFEITRMSSS 357

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL        I P+K                                       
Sbjct: 358  QMVEYLLLKNAFKNNTIAPNK-------------------------------------PS 380

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-----RS 934
            N+  + +   +Y GG V EP +G+++  I+  DF +LYPSII  +NI   T++       
Sbjct: 381  NEEYQRRLKESYEGGYVKEPIRGMHES-IVSFDFKALYPSIIISHNISPDTIDCECCKDE 439

Query: 935  PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL-----KIQQLDIQQQALKL 989
             + ++ H    K  G++P+ L+NLV+RR  +K  MK  +       + +  D +Q++LK+
Sbjct: 440  SEKILEHWFCKKKEGLIPKTLRNLVERRMEIKKKMKEKAKKGEIDEEYKLFDYEQKSLKI 499

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
             ANS YG L F  +R+Y+K  AE++T  GR+ ++ T+   +      VIY DTD      
Sbjct: 500  LANSHYGYLAFPRARWYSKECAEVVTYLGRKYIQQTIKEAE-KFGFRVIYSDTD------ 552

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKYKC--------LEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            G   I K K    ++I++V++            +E++ +G YKR + + KK+YA +    
Sbjct: 553  GFYAIWKEKISKDELIKKVHEFLDMINSRLPGNMELEFEGFYKRGIFVTKKRYALIDENN 612

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
            K       I  KGL+ VRRDW+ ++K+     L  +L E   E   + I +    V +D+
Sbjct: 613  K-------ITIKGLEFVRRDWANIAKKTQKAVLETLLIEGDVEKATKIIQD----VVDDL 661

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            + G+V  E  +I   LTK P+ Y      PHV+VA R+ + G       GD + YII   
Sbjct: 662  KKGKVNKEDLIIYTQLTKDPKEYKTT--APHVEVAKRILKKG--GRLRIGDVIGYII--- 714

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
               +SG    I++RA+ P+E +        D++YY   QI P V R+  ++ G S E L 
Sbjct: 715  ---TSGEK-SISERAKLPEEAED------YDVEYYIENQILPPVLRIMEAL-GVSKEELK 763

Query: 1282 D 1282
            +
Sbjct: 764  N 764


>gi|21228106|ref|NP_634028.1| DNA polymerase delta catalytic subunit [Methanosarcina mazei Go1]
 gi|20906547|gb|AAM31700.1| DNA polymerase delta catalytic subunit [Methanosarcina mazei Go1]
          Length = 933

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 202/766 (26%), Positives = 347/766 (45%), Gaps = 143/766 (18%)

Query: 580  CHKAKIDTPMLASEWKK-------PGMLSHFTV-VRKLDGG--------IFPMGFNKEAT 623
            C K   DT +L SE K+       P     F +    LDGG        I  + F+ E  
Sbjct: 166  CEKFACDTSILGSELKRVENLTIAPLKYLSFDIECLPLDGGMPSPDVSPIIMISFSFEPA 225

Query: 624  DRNSKA-----------GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
             +  K              +VL C+  E  +LNR    + + D D++ G+N   FD+  +
Sbjct: 226  YKGHKTLILLAKPADGMNGDVLPCKD-ETDMLNRFFEIICEYDPDIVAGYNHQDFDIPYI 284

Query: 673  LHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
              R +         + +     S +   R G             + + GR++ D     R
Sbjct: 285  TDRVKALNAKGENINPVVGRDGSHIGYRRFGLIT---------RTEVKGRVVVDALPLVR 335

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
                   Y+L  ++K  L++++ +V P ++ + +  + E  ++ ++Y   DA L++EL+ 
Sbjct: 336  RAFSLKQYTLRAVSKELLSREKLDVPPLEMEEHWNDSGEKFLKFVDYARRDAELALELVL 395

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            +L +L     L  +SG+L  + + G +   VE LLL  F                     
Sbjct: 396  NLRLLDKYIALAQVSGSLLQEIVDGGQTSMVETLLLREF--------------------- 434

Query: 852  QRSNHGVEDRNV-----EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                 G+ DR +     +EL+ E  +  +D                GG VLEPKKGL + 
Sbjct: 435  -----GLRDRVILPKPGDELSAERYDMSSDLK--------------GGEVLEPKKGLLEN 475

Query: 907  YILLLDFNSLYPSIIQEYNICFTTV--ERSPDG--LVP-----HLPSSKTTGVLPELLKN 957
             +L+LD+ SLYP+I+  +N+C+TTV  +  PDG  + P      +P     G++P +L++
Sbjct: 476  -VLILDYKSLYPTIMMAHNLCYTTVVTKDRPDGEAIKPPSGGEFVPPEVYRGIVPSILED 534

Query: 958  LVQRRRMVKTWMK-TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            L+ +R   K  M+ T+   + + LD  Q A+K+  NS YG  G++ +R Y+  LA  +T 
Sbjct: 535  LLNQRGETKKRMRLTSDKNEYRVLDATQLAIKILLNSFYGYSGYARARLYSLTLANAVTS 594

Query: 1017 QGREILRSTVDLVQNN--------------------------LNLEVIYGDTDSIMIH-- 1048
             GR  + +T DL+ N+                          ++L V YGDTDS+ +H  
Sbjct: 595  FGRSNILNTRDLINNDIGKIVLRDSAALFLEEAGEISPQDRVIDLSVAYGDTDSVFVHCR 654

Query: 1049 -SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
              G   +     +  ++ Q V+      +E++ + + KR LL+ KK+YA    + ++   
Sbjct: 655  SEGDLSLEDVSLVGNRLSQIVSASLPDPMELEFEAIAKRALLIAKKRYALWLFEPRNSGW 714

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I+ KG++ VRRDW  L+    +  L  +L +   +  VE + N +  V+ ++  G+ 
Sbjct: 715  ENKIKVKGMETVRRDWCELTSITLNEVLKLVLIKGDVDGAVEHVRNVVSDVR-NLDPGKD 773

Query: 1167 A--LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQ 1222
            A  +EK V+T+TLT+  ++Y +   QPH+ VA  LK+    TG   S G  +P++I   +
Sbjct: 774  AGIIEKLVLTRTLTRRTDSYKN--KQPHLTVAENLKK---RTGVMPSIGTRIPFVIVAGK 828

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            G           RA  PD +++ +    +D+DYY  +QI P V R+
Sbjct: 829  GL-------FVDRAEDPDYVREHNVP--LDVDYYVKKQILPPVERI 865


>gi|452210573|ref|YP_007490687.1| Archaeal DNA polymerase I [Methanosarcina mazei Tuc01]
 gi|452100475|gb|AGF97415.1| Archaeal DNA polymerase I [Methanosarcina mazei Tuc01]
          Length = 926

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 202/766 (26%), Positives = 347/766 (45%), Gaps = 143/766 (18%)

Query: 580  CHKAKIDTPMLASEWKK-------PGMLSHFTV-VRKLDGG--------IFPMGFNKEAT 623
            C K   DT +L SE K+       P     F +    LDGG        I  + F+ E  
Sbjct: 159  CEKFACDTSILGSELKRVENLTIAPLKYLSFDIECLPLDGGMPSPDVSPIIMISFSFEPA 218

Query: 624  DRNSKA-----------GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
             +  K              +VL C+  E  +LNR    + + D D++ G+N   FD+  +
Sbjct: 219  YKGHKTLILLAKPADGMNGDVLPCKD-ETDMLNRFFEIICEYDPDIVAGYNHQDFDIPYI 277

Query: 673  LHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
              R +         + +     S +   R G             + + GR++ D     R
Sbjct: 278  TDRVKALNAKGENINPVVGRDGSHIGYRRFGLIT---------RTEVKGRVVVDALPLVR 328

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
                   Y+L  ++K  L++++ +V P ++ + +  + E  ++ ++Y   DA L++EL+ 
Sbjct: 329  RAFSLKQYTLRAVSKELLSREKLDVPPLEMEEHWNDSGEKFLKFVDYARRDAELALELVL 388

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            +L +L     L  +SG+L  + + G +   VE LLL  F                     
Sbjct: 389  NLRLLDKYIALAQVSGSLLQEIVDGGQTSMVETLLLREF--------------------- 427

Query: 852  QRSNHGVEDRNV-----EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                 G+ DR +     +EL+ E  +  +D                GG VLEPKKGL + 
Sbjct: 428  -----GLRDRVILPKPGDELSAERYDMSSDLK--------------GGEVLEPKKGLLEN 468

Query: 907  YILLLDFNSLYPSIIQEYNICFTTV--ERSPDG--LVP-----HLPSSKTTGVLPELLKN 957
             +L+LD+ SLYP+I+  +N+C+TTV  +  PDG  + P      +P     G++P +L++
Sbjct: 469  -VLILDYKSLYPTIMMAHNLCYTTVVTKDRPDGEAIKPPSGGEFVPPEVYRGIVPSILED 527

Query: 958  LVQRRRMVKTWMK-TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            L+ +R   K  M+ T+   + + LD  Q A+K+  NS YG  G++ +R Y+  LA  +T 
Sbjct: 528  LLNQRGETKKRMRLTSDKNEYRVLDATQLAIKILLNSFYGYSGYARARLYSLTLANAVTS 587

Query: 1017 QGREILRSTVDLVQNN--------------------------LNLEVIYGDTDSIMIH-- 1048
             GR  + +T DL+ N+                          ++L V YGDTDS+ +H  
Sbjct: 588  FGRSNILNTRDLINNDIGKIVLRDSAALFLEEAGEISPQDRVIDLSVAYGDTDSVFVHCR 647

Query: 1049 -SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
              G   +     +  ++ Q V+      +E++ + + KR LL+ KK+YA    + ++   
Sbjct: 648  SEGDLSLEDVSLVGNRLSQIVSASLPDPMELEFEAIAKRALLIAKKRYALWLFEPRNSGW 707

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I+ KG++ VRRDW  L+    +  L  +L +   +  VE + N +  V+ ++  G+ 
Sbjct: 708  ENKIKVKGMETVRRDWCELTSITLNEVLKLVLIKGDVDGAVEHVRNVVSDVR-NLDPGKD 766

Query: 1167 A--LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQ 1222
            A  +EK V+T+TLT+  ++Y +   QPH+ VA  LK+    TG   S G  +P++I   +
Sbjct: 767  AGIIEKLVLTRTLTRRTDSYKN--KQPHLTVAENLKK---RTGVMPSIGTRIPFVIVAGK 821

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            G           RA  PD +++ +    +D+DYY  +QI P V R+
Sbjct: 822  GL-------FVDRAEDPDYVREHNVP--LDVDYYVKKQILPPVERI 858


>gi|358389733|gb|EHK27325.1| hypothetical protein TRIVIDRAFT_33534 [Trichoderma virens Gv29-8]
          Length = 1105

 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 216/826 (26%), Positives = 370/826 (44%), Gaps = 141/826 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K++G SW+    S +   P   R S C+ E  V+   D+         A++ P+ 
Sbjct: 249  FMVDCKIQGMSWVEAPASSYKMIPEHSRQSNCQIEAEVNY-MDLIAHKPEGEWAKMAPLR 307

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            + + +++    K      +V+ ++  + V     +          KKP + + F +    
Sbjct: 308  ILSFDIECAGRKGIFPEANVDPVIQIANVVTKYGE----------KKPFIRNVFCL---- 353

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                          D  S   +  +     E  +L+     L ++D D+++G+NIS FD 
Sbjct: 354  --------------DTTSSIVATQILDYEKEEQMLHEWQQFLVRVDPDIIIGYNISNFDF 399

Query: 670  DVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLC 725
              LL RA+  +V     WS+I     S+  K+++  T F S   G      +   GRL  
Sbjct: 400  PYLLDRAKHLKVQGFEYWSRIP----SKPSKVKE--TNFSSKQIGNRDTKTTNTNGRLQL 453

Query: 726  DTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETD 782
            D   L  RD  LR  SY+L  +    L + +++V    + ++F  T ES   L  Y   D
Sbjct: 454  DMLQLVQRDHHLR--SYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKD 511

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDK 840
            A+L   LM  LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P+ 
Sbjct: 512  AYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIPN- 568

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
                    +A Q    G ED+                             Y G  V+EP 
Sbjct: 569  --------IAPQ----GTEDQ-----------------------------YEGATVIEPT 587

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLP 943
            +G YD  I  LDF SLYPSIIQ +N+C+TT      VER           +P+G    + 
Sbjct: 588  RGYYDVPIATLDFASLYPSIIQAHNLCYTTLLRPGDVERFKLEKDVDYIVTPNG-DSFVT 646

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            ++K  G+L ++L+ L+  R+  K  + +     K   L+ +Q ALK++ANS+YG  G + 
Sbjct: 647  ATKRKGLLAQILEELLSARKQAKRELAQETDPFKKAVLNGRQLALKISANSVYGLTGATT 706

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDI 1054
             +     +A   T  GR+++  T   V+   N+        +VIYGDTDS+M+  G  D+
Sbjct: 707  GKLPCLAIASSTTSFGRQMIEKTKREVEMKYNIANGYTHDAQVIYGDTDSVMVKFGTKDL 766

Query: 1055 AKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
            A+A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ K
Sbjct: 767  AEAMKLGEEASKFVSAKFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTKTEKYDKMDTK 824

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GL+ VRRD  LL++ V +  L  IL +R  +   + + +++     D+   ++ + K VI
Sbjct: 825  GLETVRRDNCLLAQTVIEKVLRMILIDRDVQGAQDYVKSTIA----DLLQNKIDMSKLVI 880

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK LTK  E Y  A  Q HV++A R+K+    +    GD V Y++          + G  
Sbjct: 881  TKALTK--EDY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------RGAAGAK 929

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
               +  D +   +    ID  YY   Q+   + R+   I G +  R
Sbjct: 930  NFEKSEDPIYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGETKAR 975


>gi|308504541|ref|XP_003114454.1| hypothetical protein CRE_27041 [Caenorhabditis remanei]
 gi|308261839|gb|EFP05792.1| hypothetical protein CRE_27041 [Caenorhabditis remanei]
          Length = 1080

 Score =  204 bits (519), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 199/820 (24%), Positives = 377/820 (45%), Gaps = 127/820 (15%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+ K  + G  W+ +   K       ++ S C+ E++V+  K++ V  S    A++ P+ 
Sbjct: 223  FMAKTNIVGCGWIELPAGKCQILSNSEKSSRCQIEVSVNV-KNLIVHESEGEWADIAPIR 281

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
              +++++ +  +R    E +   ++           +A+  K  G    F     + G  
Sbjct: 282  TLSLDIECI-GRRGVFPEAIKDPII----------QIANLVKIEGETEPFVRNCFVLGTC 330

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P+             GSN++ C  +E+ LL +    + ++D D++ G+NI  FDL  +L
Sbjct: 331  APV------------VGSNIIQC-VNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYIL 377

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC-------IAGRLLCD 726
             RA+V  +P    S +GR K        KG  +  +  S   M         I GR++ D
Sbjct: 378  DRAKVLSLPQV--SHLGRQKD-------KGSVVRDAAISSKQMGSRVNKSIDIHGRIIFD 428

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAW 784
                     +  SY+L  ++   L++ +++V  H+++   Q    ++   L +Y   DA+
Sbjct: 429  VLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNIIPDLQRGDEQTRRRLAQYCLKDAY 487

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L+  L  +    ++  ++G +    L  +  Q +  ++L   +   + +P      
Sbjct: 488  LPLRLLDKLMSIINYIEMARVTGFIMPMNLYKSWLQ-ILSMMLRRCKQNNFFLP------ 540

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                              V E+ + D                 G  Y G  V++P +G Y
Sbjct: 541  ------------------VIEVNSGD-----------------GEGYEGATVIDPIRGFY 565

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPS-------SKTTGVLPE 953
            ++ I  LDF SLYPSI+  +N+C+TT+ +SP G+        PS       SK  G+LPE
Sbjct: 566  NEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSGQYFATKSKRHGLLPE 625

Query: 954  LLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L++L+  R+  K +MK      K    + +Q ALK++ANS+YG  G    +     +++
Sbjct: 626  ILEDLLVARKRAKNFMKNEKDEFKRMVYNGRQLALKISANSVYGFTGAVVGKLPCLEISQ 685

Query: 1013 LITQQGREIL---RSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIA 1061
             +T  GR+++   +S V+ +     LE        VIYGDTDS+M+  G++++A+A  I 
Sbjct: 686  SVTAFGRKMIDMTKSEVERIYKKGALEGKCPADAKVIYGDTDSVMVKFGVENVAQAMEIG 745

Query: 1062 GKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
             +  +EV+K +   ++++ + +Y   LL+ KK+YA   + F     ++ ++ KGL+ VRR
Sbjct: 746  LEAAKEVSKIFTPPIKLEFEKVYFPYLLINKKRYAG--LYFTKPEVHDKMDCKGLETVRR 803

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            D   L  +V   CL ++L ER  +  ++    ++     D+   ++ +   +I+K LTK 
Sbjct: 804  DNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTI----SDLLCNKIDISLLIISKELTKS 859

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
             + Y     Q HV++A R+K+    +    GD VPY+       ++  +V   +RA  P 
Sbjct: 860  GDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYVF-----VAAAKNVPAYERAEDPT 912

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             + + +    +D  +Y + Q+   ++R+   I G   E++
Sbjct: 913  FVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 950


>gi|301090780|ref|XP_002895592.1| DNA polymerase delta catalytic subunit [Phytophthora infestans T30-4]
 gi|262097769|gb|EEY55821.1| DNA polymerase delta catalytic subunit [Phytophthora infestans T30-4]
          Length = 1609

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 199/814 (24%), Positives = 364/814 (44%), Gaps = 120/814 (14%)

Query: 496  FLVKRKVKGPSWLS--ISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE----- 548
            F++  +++G +W+      +S   A Q+ S C+ EI      DI   +   H  E     
Sbjct: 195  FMIDEEIRGCNWVEAPTGTYSVRSAAQKKSLCQLEI------DITYDNLVSHAPEGKWGK 248

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            V P  + + +++ +  ++    E     V+           +A+  ++ G  SH  ++R 
Sbjct: 249  VAPFRILSFDIECM-GRKGHFPEAEQDPVI----------QIANVVQEQG--SHTPIIR- 294

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                +F +   K         G++V+  E  E  +L      + ++D D++ G+NI+ FD
Sbjct: 295  ---NVFVLDTCKPIV------GAHVMEFEK-EGDMLESWARFVQEVDPDIITGYNIANFD 344

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            +  +L+R +  ++ +  ++ +GRL  S     +K  +    G S  + + I GR + D  
Sbjct: 345  IPYVLNRGKALKLQN--YNLLGRLANSAAYMEKKTFSSAQYGKSENVKTTIHGRCMFDLL 402

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
               R      SYSL  ++   L + +++V PH ++   Q  T +    L  Y   DA+L 
Sbjct: 403  PIMRRSQNLSSYSLNAVSAAFLGQQKEDV-PHGIISDLQRGTDDDRHRLAVYCLKDAYLP 461

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            + L+  LS L    ++  +SG      ++  +  +V  +LL   +    +VP        
Sbjct: 462  LRLLDKLSYLVNFIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVP-------- 513

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
              + + ++N  V                                Y G  V+EPKK  Y  
Sbjct: 514  -TLPRSQNNEDV-------------------------------GYEGATVIEPKKAFYSV 541

Query: 907  YILLLDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTGVLP 952
             I  LDF SLYPSI+Q +N+C++T+              E+SP G +  + S K  G+LP
Sbjct: 542  PIATLDFASLYPSIMQAFNLCYSTLVAPGDVDKLAPGDYEKSPSGDI-FVTSKKKKGILP 600

Query: 953  ELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +L+ ++  R+  K  M  A+  ++I   + +Q ALK++ANS+YG  G    +    P+A
Sbjct: 601  LILEEVLAARKQAKRDMNAATDPMEIAVQNGRQLALKVSANSVYGFTGAIVGQMPCIPIA 660

Query: 1012 ELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
               T  GR++L  T + V+    +        +V+YGDTDS+MI  G+D + +A  +A +
Sbjct: 661  SSTTAYGRQLLFRTREEVEREYTIANGYKADAQVVYGDTDSVMIKFGVDTVEEAMPLAEE 720

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              + V+  +   ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ VRRD 
Sbjct: 721  AAKRVSDIFPNPIKLEFEKVYFPYLLMNKKRYAG--LLWTKPETYDKLDSKGLETVRRDN 778

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
             LL + + D  L +IL  R     +    N    +  D+   ++ +   VITK L K  +
Sbjct: 779  CLLVRRMVDTVLRKILINRDVPSAISYTKN----IISDLLQNRIDISLLVITKGLKKTVD 834

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
                   Q H ++A R+++    +  + G+ + Y+I        G +  + ++A  P  +
Sbjct: 835  QDDYKVKQAHTELAERMRKRDPGSAPALGERIAYVI-----IDKGKATPLYEKAEDP--V 887

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
               +    ID DYY  QQ+   + R+   I G S
Sbjct: 888  YALENNIPIDCDYYMKQQLQNPLERIFEPIIGLS 921


>gi|358401350|gb|EHK50656.1| hypothetical protein TRIATDRAFT_53190 [Trichoderma atroviride IMI
            206040]
          Length = 1103

 Score =  202 bits (515), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 214/825 (25%), Positives = 368/825 (44%), Gaps = 139/825 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K++G SW+    S +S  P   + S C+ E  ++   D+         A++ P+ 
Sbjct: 247  FMVDCKIQGMSWVEAPASSYSLIPEHSKQSNCQIEAEINY-VDLIAHKPEGEWAKMAPLR 305

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            + + +++    K      D++ ++  + V     +          KKP + + F +    
Sbjct: 306  ILSFDIECAGRKGIFPEADMDPVIQIANVVTKYGE----------KKPFIRNVFCL---- 351

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                            +S   + +L  E  E+ +L+     L ++D DV+ G+NIS FD 
Sbjct: 352  -------------DTTSSIVATQILDYEKEEK-MLHEWQQFLVRVDPDVITGYNISNFDF 397

Query: 670  DVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLC 725
              LL RA+  +V     WS+I        P  R   T F S   G+     +   GRL  
Sbjct: 398  PYLLDRAKHLKVQGFEYWSRI-----PSKPS-RVKDTNFTSKQIGSRDTKTTNTNGRLQL 451

Query: 726  DTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETD 782
            D   L  RD  LR  SY+L  +    L + +++V    + ++F  T ES   L  Y   D
Sbjct: 452  DMLQLVQRDHHLR--SYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKD 509

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDK 840
            A+L   LM  LS +    ++  ++G  +   L  +R Q+++++  L      +K ++P+ 
Sbjct: 510  AYLPQRLMDKLSCMENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIPN- 566

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
                    +A Q    G E +                             Y G  V+EP 
Sbjct: 567  --------IAPQ----GTEAQ-----------------------------YEGATVIEPT 585

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG------------LVPH----LPS 944
            +G YD  I  LDF SLYPSIIQ +N+C+TT+ R  D             + P+    + +
Sbjct: 586  RGYYDVPIATLDFASLYPSIIQAHNLCYTTLLRPGDAERFKLEKDVDYIITPNGDQFVTA 645

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
            +K  G+L ++L+ L+  R+  K  + +     K   L+ +Q ALK++ANS+YG  G +  
Sbjct: 646  AKRKGLLAQILEELLSARKQAKRELAQETDPFKKAVLNGRQLALKVSANSVYGLTGATTG 705

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIA 1055
            +     +A   T  GR+++  T   V+   N+        +VIYGDTDS+M+  G  D+A
Sbjct: 706  KLPCLAIASSTTSFGRQMIEKTKREVEERYNIANGYAHDAQVIYGDTDSVMVKFGTKDLA 765

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG
Sbjct: 766  EAMKLGEEASKFVSDKFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTRTEKYDKMDTKG 823

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            L+ VRRD  LL++ V +  L  IL +R  +   + + N++     D+   ++ + K VIT
Sbjct: 824  LETVRRDNCLLAQTVIEKVLRMILIDRDVQGAQDYVKNTIA----DLLQNKIDMSKLVIT 879

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K LTK  E Y  A  Q HV++A R+K+    +    GD V Y++          + G   
Sbjct: 880  KALTK--EDY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------RGAAGAKN 928

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
              +  D +   +    ID  YY   Q+   + R+   I G +  R
Sbjct: 929  FEKSEDPIYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGETKAR 973


>gi|17559488|ref|NP_506017.1| Protein F10C2.4 [Caenorhabditis elegans]
 gi|13124199|sp|P90829.1|DPOD1_CAEEL RecName: Full=DNA polymerase delta catalytic subunit
 gi|3875739|emb|CAB04077.1| Protein F10C2.4 [Caenorhabditis elegans]
          Length = 1081

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 201/835 (24%), Positives = 378/835 (45%), Gaps = 126/835 (15%)

Query: 481  NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIR 538
            N  +L  ++ + + +FL K  + G  W+ I   K       ++ S C+ E+TV   K++ 
Sbjct: 208  NVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPV-KNLI 266

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
            V  S    A + P+   +++++ +  +R    E +   ++           +A+  K  G
Sbjct: 267  VHESDGEWAGIAPIRTLSLDIECI-GRRGVFPEAIKDPII----------QIANLVKIEG 315

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
                F     + G   P+             GSN++ C  +E+ LL +    + ++D D+
Sbjct: 316  EAEPFVRNCFVLGTCAPV------------VGSNIIQC-VNEKVLLEKWAEFVREVDPDI 362

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            + G+NI  FDL  +L RA+V  +P    S +GR K        KG  +  +  S   M  
Sbjct: 363  ITGYNILNFDLPYILDRAKVLSLPQV--SHLGRQKE-------KGSVVRDAAISSKQMGS 413

Query: 719  -------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TL 769
                   I GR++ D         +  SY+L  ++   L++ +++V  H+++   Q    
Sbjct: 414  RVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNIIPDLQRGDE 472

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            ++   L +Y   DA+L + L+  L  +    ++  ++G      L   +  ++  ++L  
Sbjct: 473  QTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRR 532

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             +   + +P                        V E  + D                 G 
Sbjct: 533  CKQNNFFLP------------------------VIEANSGD-----------------GE 551

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPS- 944
             Y G  V++P +G Y++ I  LDF SLYPSI+  +N+C+TT+ +SP G+        PS 
Sbjct: 552  GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSG 611

Query: 945  ------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
                  SK  G+LPE+L++++  R+  K  MK      K    + +Q ALK++ANS+YG 
Sbjct: 612  QYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGF 671

Query: 998  LGFSNSRFYAKPLAELITQQGREILRST---VDLVQNNLNLE--------VIYGDTDSIM 1046
             G +  +     +++ +T  GR+++  T   V+ +     L+        VIYGDTDS+M
Sbjct: 672  TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            +  G++ +A+A  I     +EV+K +   ++++ + +Y   LL+ KK+YA   + F    
Sbjct: 732  VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAG--LYFTKPD 789

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
             ++ ++ KGL+ VRRD   L  +V   CL ++L ER  +  ++    ++     D+   +
Sbjct: 790  VHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTI----SDLLCNK 845

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            + +   +I+K LTK  + Y     Q HV++A R+K+    +    GD VPY+       +
Sbjct: 846  IDISLLIISKELTKSGDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYVF-----VA 898

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            +  +V   +RA  P  + + +    +D  +Y + Q+   ++R+   I G   E++
Sbjct: 899  AAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 951


>gi|194368602|pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
            X-Ray Crystallography
          Length = 773

 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 291/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   F    L  R++   V   +    GR      
Sbjct: 185  STEKEMIKRFLKVVKEKDPDVLITYNGDNFAFAYLKKRSEKLGVKFIL----GR--EGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + ++T E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWETGEGLERVARYSMEDAKVTYEL--GKEFFPMEAQLSRLVGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ VK  MK T   ++ + LD +Q+A+
Sbjct: 429  EEYDVAPQ--VGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GR+ + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + +  +N K    LE++ +G YKR   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDEEDK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIYEQITRDLKDY--KATGPHVAVAKRLAARG--IKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPAKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|218185393|gb|EEC67820.1| hypothetical protein OsI_35398 [Oryza sativa Indica Group]
          Length = 1087

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 174/650 (26%), Positives = 293/650 (45%), Gaps = 92/650 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            ++D D+++G+NI  FDL  L+ RA+V ++    +  +GR++ S   ++R   T F S   
Sbjct: 373  EVDPDIIIGYNICKFDLPYLIERAEVLKIVE--FPILGRIRNS---RVRVRDTTFSSRQY 427

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT- 768
            G        + GR+  D     +   +  SYSL  ++   L + +++V  H ++   Q  
Sbjct: 428  GMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIISDLQNG 486

Query: 769  -LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              E+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V   LL
Sbjct: 487  NSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLL 546

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
               + K  ++P                                 N     S  D      
Sbjct: 547  RKAKQKNLVIP---------------------------------NIKGQASGQD------ 567

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKT 947
               + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    D    +LP    
Sbjct: 568  --TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESV 625

Query: 948  T---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
                            G+LPE+L+ L+  R+  K  +K A    +   LD +Q ALK++A
Sbjct: 626  NKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISA 685

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTD 1043
            NS+YG  G +  +     ++  +T  GR+++  T  LV++          N EVIYGDTD
Sbjct: 686  NSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTD 745

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+M+  G+  +  A  +  +    ++  + K ++++ + +Y   LL+ KK+YA   + + 
Sbjct: 746  SVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAG--LYWT 803

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            +   ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+ + N++     D+ 
Sbjct: 804  NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTI----SDLL 859

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              +V L   VITK LTK  E Y  A    HV++A R+++   +T  + GD VPY+I    
Sbjct: 860  MNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAPTVGDRVPYVII--- 914

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 ++ G     R  D +   D    ID  YY   QI   + R+   I
Sbjct: 915  ----KAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPI 960


>gi|150401083|ref|YP_001324849.1| DNA polymerase Pol2 [Methanococcus aeolicus Nankai-3]
 gi|150013786|gb|ABR56237.1| DNA polymerase Pol2 [Methanococcus aeolicus Nankai-3]
          Length = 811

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 185/673 (27%), Positives = 314/673 (46%), Gaps = 119/673 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ + M EL K   +++  +N   FD   L  RA+  ++P         L   E  K
Sbjct: 210  EKELIKKTM-ELLK-QYNIIYTYNGDNFDFPYLKRRAEHLKIP---------LNFGENHK 258

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L+       S     + S I+G +  D +  +R  L    Y L  ++K   N ++ EVG 
Sbjct: 259  LKL------SKGGMNLKSAISGIVHIDLYPIARRTLNLTKYKLEDVSKELFNIEKLEVGH 312

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
            H+++ ++       +L+EY   DA  + ++  +   LPL    +NI G       + + +
Sbjct: 313  HNIVPLWNNNNP--KLVEYSLQDAEYTYKIGEYF--LPLEIMFSNIVGQCLFDISRMSSS 368

Query: 820  QRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTS 878
              VEYLLL H+F  K Y+ P++               +G E +N                
Sbjct: 369  NMVEYLLLKHSFN-KNYLAPNR--------------PYGNEYQN---------------- 397

Query: 879  HNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-----R 933
                 + K G  Y GG V EP KG++D  I+ +DF +LYPSII  YNI   T+       
Sbjct: 398  -----RLKEG--YEGGYVKEPIKGMHDN-IVSMDFRALYPSIIISYNISPDTINCPCCGD 449

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-------------LKIQQL 980
            + D ++ +    K  G++PE+LK+L++RR+ +K  +K  +                 + L
Sbjct: 450  TNDKILGYWFCKKKIGIIPEILKDLIERRKNIKDVLKNKNTTENNKDDNNKNNNENYKLL 509

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            + +QQ++K+ ANS YG + +  +R+Y+K  AE+IT  GR  +R T++  +NN    VIY 
Sbjct: 510  NYEQQSIKILANSFYGYMAYPRARWYSKECAEVITHLGRAYIRKTIEEAENN-GFNVIYA 568

Query: 1041 DTDSI--MIHSGIDDIAKAKAIAGKVIQ---EVNKKY-KCLEIDLDGLYKRMLLLKKKKY 1094
            DTD +  ++    +     + I  K I+   E+N++  + +E++ +G YKR + + KK+Y
Sbjct: 569  DTDGLYAILDENKNKNTNKENILNKTIKFLNEINRELPEKMELEFEGYYKRGIFITKKRY 628

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A +    K       I  KGL+ VRRDWS ++K+     L+ +L E   E   + I +++
Sbjct: 629  ALIDENNK-------IIVKGLEFVRRDWSNIAKKTQKKVLNTLLKEGDVETAKQIIKDTI 681

Query: 1155 MKVQEDMRS---------GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
              ++   +S          ++  +  +I K LTK    Y  A   PH+ VA +++  G  
Sbjct: 682  NDLKNLPQSKIGESPGGDKKINPKDLIIYKQLTKDISEYSTA--TPHIAVAKKMRDRG-- 737

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                 GD + ++I       +GSS  I++RA  P++    D       +YY   Q+ P V
Sbjct: 738  DRLKIGDVIGFVIV------NGSS-PISERATIPEQATNYDA------NYYIDNQVLPPV 784

Query: 1266 SRLCASIEGTSPE 1278
             R+  +I  T  E
Sbjct: 785  LRIMEAIGITKDE 797


>gi|194368604|pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
            X-Ray Crystallography. V93q Polymerase Variant
          Length = 773

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 291/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   F    L  R++   V   +    GR      
Sbjct: 185  STEKEMIKRFLKVVKEKDPDVLITYNGDNFAFAYLKKRSEKLGVKFIL----GR--EGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + ++T E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWETGEGLERVARYSMEDAKVTYEL--GKEFFPMEAQLSRLVGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ VK  MK T   ++ + LD +Q+A+
Sbjct: 429  EEYDVAPQ--VGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GR+ + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + +  +N K    LE++ +G YKR   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDEEDK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIYEQITRDLKDY--KATGPHVAVAKRLAARG--IKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPAKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|115484523|ref|NP_001067405.1| Os11g0186400 [Oryza sativa Japonica Group]
 gi|13124219|sp|Q9LRE6.1|DPOD1_ORYSJ RecName: Full=DNA polymerase delta catalytic subunit
 gi|9188570|dbj|BAA99573.1| OsPol delta large subunit [Oryza sativa Japonica Group]
 gi|62734232|gb|AAX96341.1| dna polymerase delta catalytic subunit (ec 2.7.7.7) [Oryza sativa
            Japonica Group]
 gi|77549018|gb|ABA91815.1| DNA polymerase delta catalytic subunit, putative, expressed [Oryza
            sativa Japonica Group]
 gi|113644627|dbj|BAF27768.1| Os11g0186400 [Oryza sativa Japonica Group]
          Length = 1105

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 174/650 (26%), Positives = 293/650 (45%), Gaps = 92/650 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            ++D D+++G+NI  FDL  L+ RA+V ++    +  +GR++ S   ++R   T F S   
Sbjct: 391  EVDPDIIIGYNICKFDLPYLIERAEVLKIVE--FPILGRIRNS---RVRVRDTTFSSRQY 445

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT- 768
            G        + GR+  D     +   +  SYSL  ++   L + +++V  H ++   Q  
Sbjct: 446  GMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIISDLQNG 504

Query: 769  -LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              E+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V   LL
Sbjct: 505  NSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLL 564

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
               + K  ++P                                 N     S  D      
Sbjct: 565  RKAKQKNLVIP---------------------------------NIKGQASGQD------ 585

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKT 947
               + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    D    +LP    
Sbjct: 586  --TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESV 643

Query: 948  T---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
                            G+LPE+L+ L+  R+  K  +K A    +   LD +Q ALK++A
Sbjct: 644  NKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISA 703

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTD 1043
            NS+YG  G +  +     ++  +T  GR+++  T  LV++          N EVIYGDTD
Sbjct: 704  NSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTD 763

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+M+  G+  +  A  +  +    ++  + K ++++ + +Y   LL+ KK+YA   + + 
Sbjct: 764  SVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAG--LYWT 821

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            +   ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+ + N++     D+ 
Sbjct: 822  NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTI----SDLL 877

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              +V L   VITK LTK  E Y  A    HV++A R+++   +T  + GD VPY+I    
Sbjct: 878  MNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAPTVGDRVPYVII--- 932

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 ++ G     R  D +   D    ID  YY   QI   + R+   I
Sbjct: 933  ----KAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPI 978


>gi|301015727|pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
            Gorgonarius In Complex With Hypoxanthine-Containing Dna
          Length = 773

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 291/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   F    L  R++   V   +    GR      
Sbjct: 185  STEKEMIKRFLKVVKEKDPDVLITYNGDNFAFAYLKKRSEKLGVKFIL----GR--EGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + ++T E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWETGEGLERVARYSMEDAKVTYEL--GKEFFPMEAQLSRLVGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ VK  MK T   ++ + LD +Q+A+
Sbjct: 429  EEYDVAPQ--VGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GR+ + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + +  +N K    LE++ +G YKR   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDEEDK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIYEQITRDLKDY--KATGPHVAVAKRLAARG--IKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPAKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|8569297|pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
          Length = 775

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 175/646 (27%), Positives = 290/646 (44%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + +++ E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWESGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYKRNELAPNK---PDERELARRRG---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                          YAGG V EP++GL+D  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------GYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P+  V H       G +P LL +L++ R+ +K  MK T   L+ + LD +Q+A+
Sbjct: 429  KEYDVAPE--VGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GRE +   +  ++     +V+Y DTD +  
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + ++ +N K    LE++ +G Y R   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+    Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLRDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPADEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748


>gi|328866536|gb|EGG14920.1| hypothetical protein DFA_10794 [Dictyostelium fasciculatum]
          Length = 775

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 221/442 (50%), Gaps = 44/442 (9%)

Query: 329 VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHH--SCCVVVKNMQRCVYAIP 384
           + +   L F+ L A E+  G  +G +YLFGKVK   G+     SCC+VV+N+QR V+ +P
Sbjct: 347 IQNQKGLEFFFLTAEEETQGTFVGKIYLFGKVKQQVGTVTRFVSCCIVVENLQRNVFLLP 406

Query: 385 NGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVK 444
                       ++   E + I P             ++ EI + +    + N+    V 
Sbjct: 407 RSYC--------VDAKGEPTTIQP---------TDEMIEKEIKSIMDANKIKNWTCKKVS 449

Query: 445 RRYAFGQAEIPAGENY-----VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVK 499
           R   F   E     N      + KI+YP    PL  D++G  F    G  SS LELFL+K
Sbjct: 450 RSICFDYKEENKSTNISKYDNLWKISYPSNFAPLKNDIQGLTFKCGYGITSSPLELFLLK 509

Query: 500 RKVKGPSWLSISKFSSC-PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE-VPPVTVTAI 557
            ++ GP W+ +          Q++S+C++E  V S KD+      K   +  PP+ V A+
Sbjct: 510 TRIMGPCWMVLRNVKPVLDVSQKISYCRFEARVPSFKDVAPFDKVKLAPQPSPPIVVMAL 569

Query: 558 NLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMG 617
           ++KT   K  D NEI+  S V       D   + S  +    + + T +R L G   PM 
Sbjct: 570 SVKTTSTK--DSNEILMISSVVNEHISCDGGTIQSAREN---VKYMTSIRPLTGQTLPMD 624

Query: 618 FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ 677
           F ++   R +      L  +++ER +L +L   +  +D D+L GHNI G+DLDV++HR +
Sbjct: 625 FKQQGQSRQN------LSVQNNERLVLTQLANTIMSVDPDMLAGHNIIGYDLDVIIHRMK 678

Query: 678 VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL-R 736
             +V +  WS +G+L+R++ P+L  G  I  +  S      + GRL+CDT+L S++ L +
Sbjct: 679 ELKVQN--WSYLGKLRRTQFPRLSGG--IGSAENSYQEKQVLIGRLVCDTYLLSKEFLQK 734

Query: 737 EVSYSLTQLAKTQLNKDRKEVG 758
           E +YSL +L+KTQL  +++ + 
Sbjct: 735 EKNYSLVELSKTQLQIEKQSIN 756


>gi|3913540|sp|Q56366.1|DPOL_THES9 RecName: Full=DNA polymerase
 gi|1197452|gb|AAA88769.1| DNA polymerase [Thermococcus sp. 9oN-7]
          Length = 775

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 175/646 (27%), Positives = 290/646 (44%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + +++ E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEIAQAWESGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYKRNELAPNK---PDERELARRRG---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                          YAGG V EP++GL+D  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------GYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P+  V H       G +P LL +L++ R+ +K  MK T   L+ + LD +Q+A+
Sbjct: 429  KEYDVAPE--VGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GRE +   +  ++     +V+Y DTD +  
Sbjct: 487  KILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + ++ +N K    LE++ +G Y R   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+    Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLRDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPADEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748


>gi|242018791|ref|XP_002429857.1| DNA polymerase delta catalytic subunit, putative [Pediculus humanus
            corporis]
 gi|212514875|gb|EEB17119.1| DNA polymerase delta catalytic subunit, putative [Pediculus humanus
            corporis]
          Length = 1096

 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 191/681 (28%), Positives = 308/681 (45%), Gaps = 94/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VLC +  E  LL      + ++D D+  G+NIS FD   L++RA+   V    +  
Sbjct: 356  VGSQVLCFDK-ETELLKSWGEFVRQVDPDICTGYNISNFDFPYLINRAKHLNVNDFCF-- 412

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  ++  + K   +     G      + I GR+  D  L      +  SY+L  ++
Sbjct: 413  LGRIK--DIKSVVKDSVLQSKQLGRRENKNTNIEGRVTFDLLLVLVRDYKLRSYTLNAVS 470

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L       ++  
Sbjct: 471  YHFLQEQKEDVH-HSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLIEKLMCFINYMEMAR 529

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   + K Y++P                          
Sbjct: 530  VTGVPLSCLLTRGQQIKVVSQLLRKTKEKHYLMP-------------------------- 563

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                         +HN     ++   + G  V+EPKKG Y   I  LDF+SLYPSI+  +
Sbjct: 564  -------------THNSVGSDEQ---FEGATVIEPKKGYYPDPIATLDFSSLYPSIMMAH 607

Query: 925  NICFTTVER---------SPD--GLVP--HLPSSKTT--GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ R          PD     P  H    K+   G+LPE+L+NL+  R+  KT +
Sbjct: 608  NLCYTTLLRPGVKEKLNLEPDKYSTTPSNHFFVKKSIRKGLLPEILENLLTARKKAKTDL 667

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +   K Q LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 668  KNETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTSYGRSMIEQTKQE 727

Query: 1029 VQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+   N+        EVIYGDTDS+MI  G   + +   +  +    V+ K+   ++++ 
Sbjct: 728  VEMKYNIANGYKHDSEVIYGDTDSVMIKFGNKTLEECMELGREAAVYVSSKFISPIKLEF 787

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + F     Y+ ++ KGL+ VRRD S L   +   CL +IL 
Sbjct: 788  EKVYFPYLLISKKRYAG--LYFTKTDTYDKMDCKGLETVRRDNSPLVANMITTCLQKILI 845

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
             R+ ++ V    N   KV  D+   ++ + + VITK LTK    Y  A  Q HV++A ++
Sbjct: 846  NRNPDEAV----NYAKKVISDLLCNKIDISQLVITKELTK--NDY--AAKQAHVELAQKM 897

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+    T    GD VPY+ICC       ++ G     R  D +   +    ID +YY   
Sbjct: 898  KKRDPGTAPKLGDRVPYVICC-------ATKGTPAYCRAEDPIYVLENSVPIDFNYYLEN 950

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            QI   + R+   I G   E +
Sbjct: 951  QISKPLLRIFEPILGEKAESI 971


>gi|134046285|ref|YP_001097770.1| replicative DNA polymerase I [Methanococcus maripaludis C5]
 gi|132663910|gb|ABO35556.1| replicative DNA polymerase I [Methanococcus maripaludis C5]
          Length = 780

 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 188/659 (28%), Positives = 306/659 (46%), Gaps = 103/659 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K D D++  +N   FD   L  RA+V      +  K+G  K  E  K
Sbjct: 199  EKELIKRI-IEILK-DYDIIYTYNGDNFDFPYLKKRAEVF----GLELKLG--KNDEKIK 250

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +   +  + +VG 
Sbjct: 251  ITKG----GMNSK----SYIPGRVHIDLYPIARRLLNLTKYRLENVTEALFDVKKVDVGH 302

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+  L+    L+EY   DA+ +  +      LPL    + +         + + +
Sbjct: 303  ENIPKMWDNLDET--LVEYSYQDAYYTQRIGEQF--LPLEIMFSRVVNQSLYDINRMSSS 358

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL     K  I P                                    N  S 
Sbjct: 359  QMVEYLLLKNSYNKGVIAP------------------------------------NRPSG 382

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------R 933
             +++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +N+   T++       
Sbjct: 383  KEYQKRIRS-SYEGGYVKEPIKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCDCCNDE 440

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-----KTASGLKIQQLDIQQQALK 988
              + ++ H    K  G++P+ L +L+ RR+ VK  +     K     + Q LD +Q+++K
Sbjct: 441  ENEEILGHKFCKKNIGIIPKTLMDLIDRRKSVKKILREKGEKGEFDEEYQILDYEQRSIK 500

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            + ANS YG L F  +R+Y++  AE+ T  GR+ ++ T++  + N   +VIY DTD     
Sbjct: 501  VLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAE-NFGFKVIYADTDGFYSK 559

Query: 1049 SGIDDIAKAKAIAGKV---IQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
                +      +  K    ++ +N K    +E++ +G +KR + + KKKYA +       
Sbjct: 560  WANGEKLTNDELLEKTKIFLKNINDKLPGEMELEFEGYFKRGIFVTKKKYALIDEN---- 615

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
               E I  KGL++VRRDWS +SK      L+ +L E S E+  + I +++    ++++  
Sbjct: 616  ---EKITIKGLEVVRRDWSNVSKNTQKSVLNALLKEGSVENAKKVIQDTI----KELKDR 668

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            +V  E  +I   LTK  E Y      PHV+VA ++ +SG     + GD + YII      
Sbjct: 669  KVDKEDLLIHTQLTKRIEDYKTT--APHVEVAKKILKSG--NRVNTGDVISYII------ 718

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             +G +  I++RA  P E  K       D +YY   QI P V RL  ++ G + + L D 
Sbjct: 719  -TGGNKSISERAE-PIETAKD-----YDTNYYIENQILPPVIRLMEAL-GITKDELKDS 769


>gi|389745703|gb|EIM86884.1| hypothetical protein STEHIDRAFT_79581, partial [Stereum hirsutum
            FP-91666 SS1]
          Length = 1077

 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 246/1012 (24%), Positives = 428/1012 (42%), Gaps = 183/1012 (18%)

Query: 315  EGKSGLNCQESEFEVDDD-GSLPFYILDAHEQL-SGANMGTLYLFGKVKAGSTHHSCCVV 372
            EG +GL  +     +D+   S+ F  +D  E + + +   T+ +FG  +AG   HS  + 
Sbjct: 65   EGGAGLWSRPELPAIDEKKDSIVFQQIDVEESVDASSGQVTIRMFGVTEAG---HSVLMH 121

Query: 373  VKNMQRCVY-AIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLL 431
            V       Y  +P G  F  +++               AFR  L   A G++        
Sbjct: 122  VTQFSPYFYIPVPRG--FTNEDVN--------------AFRDHLDASAGGVRA------- 158

Query: 432  NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKG----------EN 481
                    V  V++R  +G      G++ V+       DP     ++G          + 
Sbjct: 159  --------VELVQKRSLWGYK----GDDLVMFAKITVTDPKALPRVRGVFERGECSFRDL 206

Query: 482  FCSLLGTHSSALEL---FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKD 536
            F  ++ T+ S +     F++  KV G +W+ +   K+       + S C+ E+TV    D
Sbjct: 207  FKGIVSTYESNIAYTLRFMIDTKVVGMNWIEVPAGKYMINKGKSKKSQCQIEMTVRW-ND 265

Query: 537  IRVSSSSKHVAEVPPVTVTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLAS 592
                      +++ P+ V + +++    K      +V+ ++  + +   + +        
Sbjct: 266  FISHPPDGQWSKLAPLRVLSFDIECAGRKGIFPEANVDPVIQIANMVTRQGE-------- 317

Query: 593  EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
               KP + + FT+                    +   GS VL  +  ER +L      + 
Sbjct: 318  --SKPFIRNIFTL-----------------NTCSHIVGSQVLSFDD-EREMLQAWCNFIN 357

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSG 710
            + D DV++G+NIS FDL  LL RA+  +V    +   GR+K  ++++         FG  
Sbjct: 358  EADPDVVIGYNISNFDLPYLLDRAKALKVDD--FPYFGRIKGNKTQVKDTHFSSKAFGQR 415

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--T 768
             S    + + GRL  D     +   +  SY+L  +    L + +++V  H V+   Q  T
Sbjct: 416  DSK--ETTMDGRLQLDLLQYMQREHKLRSYTLNSVCAQFLGEQKEDVH-HSVITELQNGT 472

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             ES   L  Y   DA+L   LM  L       ++  ++G  +   L   ++ +V   L  
Sbjct: 473  SESRRRLAVYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNYLLSRGQSIKVLSQLFR 532

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                + Y+VP                           L  E ++                
Sbjct: 533  KANDEGYVVP--------------------------SLKGEGSD---------------- 550

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDGL-------- 938
              Y G  V+EPKKG YD  I  LDF+SLYPSI+  +N+C+TT+  + + D L        
Sbjct: 551  EQYEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLLDKNTIDRLNLQKDIDY 610

Query: 939  --VPH----LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
               P+    + S K  G+LP +L++L+  R+  K  +K  +   K   LD +Q ALK++A
Sbjct: 611  IQTPNNDFFIKSHKRKGLLPTVLEDLIGARKRAKADLKNETDPFKRAVLDGRQLALKVSA 670

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTD 1043
            NS+YG  G +  +    P++  +T  GR+++  T   V+        ++ + +VIYGDTD
Sbjct: 671  NSVYGFTGATIGKLPCLPISSSVTSYGRQMIEKTKSEVEAEYCVANGHSHDAKVIYGDTD 730

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+M+  G  D+ K   +  +  + V +K+ K ++++ + +Y   LL+ KK+YA +     
Sbjct: 731  SVMVKFGPPDLEKVMQLGSEAAEFVTQKFVKPIKLEFEKVYFPYLLISKKRYAGLYWTRP 790

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            D   Y+ ++ KG++ VRRD   L   V + CL ++L +R     V+   +   +V  D+ 
Sbjct: 791  D--KYDKMDSKGIETVRRDNCRLVSTVIETCLHKMLIDRD----VKGAEDYTKQVISDLL 844

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              +V + + VITK L K       A  Q HV++A R+KQ    +  + GD V Y+I   +
Sbjct: 845  QNKVDMSQLVITKALAKADY----AAKQAHVELAERMKQRDAGSAPALGDRVAYVIV--K 898

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            G       G A   +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 899  GIK-----GAAAYEKSEDPIYVLENSIPIDTKYYLENQLSKPLMRIFEPILG 945


>gi|159904917|ref|YP_001548579.1| DNA polymerase Pol2 [Methanococcus maripaludis C6]
 gi|159886410|gb|ABX01347.1| DNA polymerase Pol2 [Methanococcus maripaludis C6]
          Length = 781

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 188/660 (28%), Positives = 311/660 (47%), Gaps = 104/660 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K D D++  +N   FD   L  RA+V      +  K+G  K  E  K
Sbjct: 199  EKELIKRI-IEILK-DYDIIYTYNGDNFDFPYLKKRAEVF----GLELKLG--KNDEKIK 250

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +   +  + +VG 
Sbjct: 251  ITKG----GMNSK----SYIPGRVHIDLYPIARRLLNLTKYRLENVTEALFDVKKVDVGH 302

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+  L+    L+EY   DA+ +  +      LPL    + +         + + +
Sbjct: 303  ENIPKMWDKLDET--LVEYSYQDAYYTQRIGEQF--LPLEIMFSRVVNQSLYDINRMSSS 358

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL     K  I P                                    N  S 
Sbjct: 359  QMVEYLLLKNSYNKGVIAP------------------------------------NRPSG 382

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-- 937
             +++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +N+   T++       
Sbjct: 383  KEYQKRIRS-SYEGGYVKEPIKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCDCCNNE 440

Query: 938  -----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS-----GLKIQQLDIQQQAL 987
                 ++ H    K  G++P+ L +L+ RR+ VK  ++  +       + Q LD +Q+++
Sbjct: 441  ENEEEILGHKFCKKNIGIIPKTLMDLIDRRKSVKKILREKAKNNEFDEEYQILDYEQRSI 500

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG L F  +R+Y++  AE+ T  GR+ ++ T++  + N   +VIY DTD    
Sbjct: 501  KVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAE-NFGFKVIYADTDGFYS 559

Query: 1048 H-SGIDDIAKAKAI--AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
              +  + + K + +      ++ +N K    +E++ +G +KR + + KKKYA +      
Sbjct: 560  KWANGEKLTKDELLEKTKTFLKTINDKLPGEMELEFEGYFKRGIFVTKKKYALIDEN--- 616

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
                E I  KGL++VRRDWS +SK      L+ +L E + E+  + I +++    ++++ 
Sbjct: 617  ----EKITVKGLEVVRRDWSNVSKNTQKSVLNALLKEGNVENAKKVIQDTI----KELKD 668

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G+V  E  +I   LTK  E Y      PHV+VA ++ +SG     + GD + YII     
Sbjct: 669  GKVNKEDLLIHTQLTKRIEDYKTT--SPHVEVAKKIMKSG--NRVNTGDVISYII----- 719

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
             +SG+   I++RA  P E  K       D +YY   QI P V RL  ++ G + + L D 
Sbjct: 720  -TSGNK-SISERAE-PIETAKD-----YDTNYYIENQILPPVIRLMEAL-GITKDELKDS 770


>gi|242070347|ref|XP_002450450.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor]
 gi|241936293|gb|EES09438.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor]
          Length = 1099

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 176/664 (26%), Positives = 301/664 (45%), Gaps = 92/664 (13%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER +L      + ++D D+++G+NI  FD+  L+ RA+V ++  + +  +GR++ S   
Sbjct: 371  TERDILLAWRDFIREVDPDIIIGYNICKFDMPYLIERAEVLKI--AEFPILGRIRNS--- 425

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            ++R   T F S   G        I GR+  D     +   +  SYSL  ++   L + ++
Sbjct: 426  RVRVRDTTFSSRQYGVRESKDVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++  ++G      
Sbjct: 486  DVH-HSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   ++ +V   LL   + K  ++P                                   
Sbjct: 545  LSRGQSIKVLSQLLRKAKQKNLVIP----------------------------------- 569

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                  N   +G     + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+  
Sbjct: 570  ------NIKGQGSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVP 623

Query: 934  SPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
              D    +LP                    G+LPE+L+ L+  R+  K  +K A   L+ 
Sbjct: 624  PEDARKLNLPPESINKTPSGEIFVKPELQKGILPEILEELLAARKRAKADLKEAKDPLER 683

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---- 1033
              LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T  LV++      
Sbjct: 684  AVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTVG 743

Query: 1034 ----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                N EVIYGDTDS+M+  G+  +  A  +  +    ++  + K ++++ + +Y   LL
Sbjct: 744  GYEHNAEVIYGDTDSVMVQFGVSTVQDAMKLGREAADYISGTFTKPIKLEFEKVYFPYLL 803

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA   + + +   ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+
Sbjct: 804  ISKKRYAG--LYWTNPEKFDKMDAKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQ 861

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             + N++     D+   +V L   VITK LTK  E Y  A    HV++A R+++   +T  
Sbjct: 862  YVKNTI----SDLLMNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDPATAP 915

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            + GD VPY+I         ++ G     +  D +   D    ID  YY   QI   + R+
Sbjct: 916  TVGDRVPYVII-------KAAKGAKAYEKSEDPIYVLDNNIPIDPQYYLENQISKPLLRI 968

Query: 1269 CASI 1272
               I
Sbjct: 969  FEPI 972


>gi|341904443|gb|EGT60276.1| hypothetical protein CAEBREN_32385 [Caenorhabditis brenneri]
          Length = 1042

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 207/843 (24%), Positives = 383/843 (45%), Gaps = 115/843 (13%)

Query: 481  NFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS-CPAP--------QRVSWCKYEITV 531
            N  +L  ++ + + +FL    + G  W+ ++K     PA         ++ S C+ E+ V
Sbjct: 211  NIGNLYESNINPVVMFLANTNIVGCGWIEVNKKKKYLPAGKCRILSGGEKSSRCQIEVIV 270

Query: 532  DSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
            D  K+I V  S    A + P+ +    L+T+           S  + C  +  I      
Sbjct: 271  DV-KNIIVHESDGEWAGIAPIRIV---LRTL-----------SLDIECIGRRGI----FP 311

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA-GSNVLCCESSERALLNRLMIE 650
               K P  +     + K++G   P   N       +   GSN++ C  +E+ LL +    
Sbjct: 312  EAIKDP--IIQIANLVKIEGESEPFVRNCFVLGTCAPVVGSNIIQC-VNEKVLLEKWAEF 368

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
            + ++D D++ G+NI  FDL  +L RA+V  +P    S +GR +        KG  +  + 
Sbjct: 369  VREVDPDIITGYNILNFDLPYILDRAKVLSLPQV--SHLGRQRD-------KGSIVRDAA 419

Query: 711  ASPGIMSC-------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVL 763
             S   M         I GR++ D         +  SY+L  ++   L++ +++V  H+++
Sbjct: 420  ISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNII 478

Query: 764  KMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L +Y   DA+L + L+  L  +    ++  ++G              
Sbjct: 479  PDLQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTG------------VP 526

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            + +LL    + K ++ PD              S+H V    +  +       +N      
Sbjct: 527  MNFLLTKGQQIKVFLNPD-------------FSHHFVFALQILSMMLRRCKQNNFFLPVI 573

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--- 938
                  G  Y G  V+EP +G Y++ I  LDF SLYPSI+  +N+C+TT+ ++P G+   
Sbjct: 574  EANSGDGEGYEGATVIEPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKAPQGVENE 633

Query: 939  -VPHLPS-------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKL 989
                 PS       SK  G+LPE+L++++  R+  K  MK      K    + +Q ALK+
Sbjct: 634  DYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKI 693

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREIL---RSTVDLVQNNLNLE--------VI 1038
            +ANS+YG  G +  +     +++ +T  GR+++   +S V+ +     L+        VI
Sbjct: 694  SANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALDGKCPADAKVI 753

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            YGDTDS+M+  G++ +A+A  I     +EV+K +   ++++ + +Y   LL+ KK+YA  
Sbjct: 754  YGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAG- 812

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
             + F     ++ ++ KGL+ VRRD   L  +V   CL ++L ER  +  ++    ++   
Sbjct: 813  -LYFTKPDVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTI--- 868

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
              D+   ++ +   +I+K LTK  + Y     Q HV++A R+K+    +    GD VPY+
Sbjct: 869  -SDLLCNKIDISLLIISKELTKSGDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYV 925

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
                   ++  +V   +RA  P  + + +    +D  +Y + Q+   ++R+   I G   
Sbjct: 926  F-----IAAAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRA 978

Query: 1278 ERL 1280
            E++
Sbjct: 979  EKI 981


>gi|242060584|ref|XP_002451581.1| hypothetical protein SORBIDRAFT_04g004200 [Sorghum bicolor]
 gi|241931412|gb|EES04557.1| hypothetical protein SORBIDRAFT_04g004200 [Sorghum bicolor]
          Length = 1101

 Score =  200 bits (508), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 176/664 (26%), Positives = 301/664 (45%), Gaps = 92/664 (13%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER +L      + ++D D+++G+NI  FD+  L+ RA+V ++  + +  +GR++ S   
Sbjct: 373  AERDILLAWRNFIREVDPDIIIGYNICKFDMPYLIERAEVLKI--AEFPILGRIRNS--- 427

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            ++R   T F S   G        I GR+  D     +   +  SYSL  ++   L + ++
Sbjct: 428  RVRVRDTTFSSRQYGVRESKDVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKE 487

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++  ++G      
Sbjct: 488  DVH-HSIISDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLLYIYNYVEMARVTGVPISFL 546

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   ++ +V   LL   + K  ++P                                   
Sbjct: 547  LSRGQSIKVLSQLLRKAKQKNLVIP----------------------------------- 571

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                  N   +G     + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+  
Sbjct: 572  ------NIKGQGSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVP 625

Query: 934  SPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
              D    +LP                    G+LPE+L+ L+  R+  K  +K A   L+ 
Sbjct: 626  PEDARKLNLPPESINKTPSGEIFVKPELQKGILPEILEELLAARKRAKADLKEAKDPLER 685

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---- 1033
              LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T  LV++      
Sbjct: 686  AVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTVG 745

Query: 1034 ----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                N EVIYGDTDS+M+  G+  +  A  +  +    ++  + K ++++ + +Y   LL
Sbjct: 746  GYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFTKPIKLEFEKVYFPYLL 805

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA   + + +   ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+
Sbjct: 806  ISKKRYAG--LYWTNPEKFDKMDAKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQ 863

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             + N++     D+   +V L   VITK LTK  E Y  A    HV++A R+++   +T  
Sbjct: 864  YVKNTI----SDLLMNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDPATAP 917

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            + GD VPY+I         ++ G     +  D +   D    ID  YY   QI   + R+
Sbjct: 918  TVGDRVPYVII-------KAAKGAKAYEKSEDPIYVLDNNIPIDPQYYLENQISKPLLRI 970

Query: 1269 CASI 1272
               I
Sbjct: 971  FEPI 974


>gi|348666766|gb|EGZ06593.1| hypothetical protein PHYSODRAFT_532354 [Phytophthora sojae]
          Length = 1050

 Score =  200 bits (508), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 203/814 (24%), Positives = 364/814 (44%), Gaps = 120/814 (14%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE----- 548
            F++   ++G +W+   K  +S     Q+ S C+ EI      DI   +   H  E     
Sbjct: 195  FMIDEGIRGCNWVEAPKGAYSVRSTAQKKSLCQLEI------DITYDNLVSHAPEGQWGK 248

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            V P+ + + +++ +  ++    E     V+           +A+  ++ G  SH  ++R 
Sbjct: 249  VAPLRILSFDIECM-GRKGHFPEAEQDPVI----------QIANVVQEQG--SHTPIIR- 294

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                +F +   K         G++V+  E  E  +L +    + ++D D++ G+NI+ FD
Sbjct: 295  ---NVFVLDTCKPIV------GAHVMEFEK-EGEMLEKWARFVQEVDPDIITGYNIANFD 344

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            +  LL+R +  ++ +  ++ +GRL        +K  +    G S  + + I GR + D  
Sbjct: 345  IPYLLNRGKALKLQN--YNLLGRLANKAAFMEKKTFSSAQYGKSENVKTTIHGRCMFDLL 402

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
               R   +  SYSL  ++   L + +++V PH ++   Q  T +    L  Y   DA+L 
Sbjct: 403  PIMRRSQQLSSYSLNAVSAAFLGQQKEDV-PHGIISDLQRGTDDDRHRLAVYCLKDAYLP 461

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            + L+  LS L    ++  +SG      ++  +  +V  +LL   +    +VP        
Sbjct: 462  LRLLDKLSYLVNFIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVP-------- 513

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                  RS +           NEDA                   Y G  V+EPKK  Y  
Sbjct: 514  ---TLPRSQN-----------NEDA------------------GYEGATVIEPKKAFYSV 541

Query: 907  YILLLDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTGVLP 952
             I  LDF SLYPSI+Q +N+C++T+              ERSP G +  + S K  G+LP
Sbjct: 542  PIATLDFASLYPSIMQAFNLCYSTLVAPGDVDKLAPGDYERSPSGDI-FVTSKKKKGILP 600

Query: 953  ELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +L+ ++  R+  K  M  A+  ++    + +Q ALK++ANS+YG  G    +    P+A
Sbjct: 601  LILEEVLAARKQAKWDMNAATDPMEKAVQNGRQLALKVSANSVYGFTGAIVGQMPCIPIA 660

Query: 1012 ELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
               T  GR++L  T + V+    +        +V+YGDTDS+MI  G+D + +A  +A +
Sbjct: 661  SSTTAYGRQLLFRTREEVERIYTIANGYKADAQVVYGDTDSVMIKFGVDTVEEAMPLAEE 720

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              + V+  +   ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ VRRD 
Sbjct: 721  AAKRVSDIFPNPIKLEFEKVYFPYLLMNKKRYAG--LLWTKPEKYDKLDSKGLETVRRDN 778

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
             LL + + +  L +IL  R     +    N    V  D+   ++ +   VITK L K  +
Sbjct: 779  CLLVRRMVESVLRKILINRDVPGAISYTKN----VISDLLQNRIDISLLVITKGLKKTVD 834

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
                   Q H ++A R+++    +  + G+ + Y+I        G +  +  +A  P  +
Sbjct: 835  QDDYKVKQAHTELAERMRKRDPGSAPALGERIAYVI-----IDKGKATPLYDKAEDP--V 887

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
               +    ID DYY  QQ+   + R+   I G S
Sbjct: 888  YALENNIPIDCDYYMKQQLQNPLERIFEPIIGLS 921


>gi|324120740|dbj|BAJ78761.1| DNA polymerase delta catalytic subunit [Bemisia tabaci]
          Length = 1094

 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 187/681 (27%), Positives = 316/681 (46%), Gaps = 98/681 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  V+ C++ E  LL R    + + D DV  G+NI+ FD   L++RA+   V +  +S 
Sbjct: 354  VGCQVISCDT-EMELLQRWSDFVRESDPDVFTGYNINNFDFPYLINRAKHLNVHN--FSF 410

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQ 744
            +GR+K  RS +          G   +  I     GR+  D  F+  RD  LR  SY+L  
Sbjct: 411  LGRIKDTRSVIKDQIIQSKQMGRRENKNIN--FEGRVPFDLLFVLLRDYKLR--SYTLNA 466

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H+++   Q  T ++   L  Y   DA+L + L+  L       ++
Sbjct: 467  VSYHFLQEQKEDVH-HNMITELQEGTAQTRRRLAVYCLKDAYLPIRLLEKLMCFINYMEM 525

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   LL   R K +++P                        
Sbjct: 526  ARVTGVPLASLLTRGQQIKVVSQLLRKAREKGFLMPT----------------------- 562

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                               H  G++   + G  V+EPKKG Y++ I  LDF+SLYPSI+ 
Sbjct: 563  -------------------HTGGQQDDQFEGATVIEPKKGYYNEPIATLDFSSLYPSIMM 603

Query: 923  EYNICFTTVER---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKT 967
             +N+C+TT+ +         SPD  V        + SS   G+LPE+L +L+  R+  K 
Sbjct: 604  AHNLCYTTLLQPNMKDKLNLSPDMYVKTPAQNFFVKSSVRKGLLPEILDDLLTARKKAKA 663

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T 
Sbjct: 664  DLKKETDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTK 723

Query: 1027 DLVQNN--------LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+ +         + EVIYGDTDS+M+  G D++ +   +  +  + V  K+   +++
Sbjct: 724  QEVEQHYCIANGFKYDAEVIYGDTDSVMVRFGFDNLEETMNLGREAAEYVTSKFINPIKL 783

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   V + CL ++
Sbjct: 784  EFEKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANVMNMCLQKL 841

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R   D V ++  +  KV  D+   ++ + + VITK LTK       A  Q HV++A 
Sbjct: 842  LIDR---DQVSAVAYA-KKVISDLLCNRMDISQLVITKELTKSDY----AAKQAHVELAK 893

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            ++K+    T    GD VP++ C     ++G      ++A  P  +   +    ID +YY 
Sbjct: 894  KMKKRDAGTAPKLGDRVPFVFC-----AAGKGTPAYEKAEDP--IFVLENNMPIDANYYL 946

Query: 1258 SQQIHPVVSRLCASIEGTSPE 1278
              Q+   + R+ + I G   E
Sbjct: 947  ENQLSKPLLRIFSPILGDKAE 967


>gi|225431691|ref|XP_002264385.1| PREDICTED: DNA polymerase delta catalytic subunit [Vitis vinifera]
 gi|296088521|emb|CBI37512.3| unnamed protein product [Vitis vinifera]
          Length = 1089

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 181/675 (26%), Positives = 309/675 (45%), Gaps = 95/675 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G +V+  E+ ER +L      + ++D D+++G+NI  FDL  L+ RA V  +  + +  
Sbjct: 352  VGVDVMSFET-EREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERASVLGI--AEFPI 408

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            +GR++ S   ++R   T F S   G        + GR+  D     +   +  SYSL  +
Sbjct: 409  LGRIRNS---RVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSV 465

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L++ +++V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++ 
Sbjct: 466  SAHFLSEQKEDVH-HSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMA 524

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   ++ +V   LL   + K  ++P                       NV
Sbjct: 525  RVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLP-----------------------NV 561

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
            ++  +E                     Y G  VLE   G Y+K I  LDF SLYPSI+  
Sbjct: 562  KQAGSEQGT------------------YEGATVLEANAGFYEKPIATLDFASLYPSIMMA 603

Query: 924  YNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            YN+C+ T                V ++P G +  + SS   G+LPE+L+ L+  R+  K 
Sbjct: 604  YNLCYCTLVTPEDVRKLNLPPECVNKTPSGEI-FVKSSLQKGILPEILEELLAARKRAKA 662

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K A   L+   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T 
Sbjct: 663  DLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 722

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
             LV+           N EVIYGDTDS+M+  G+  +  A  +  +  + ++  + K +++
Sbjct: 723  KLVEEKFTTLGGYEHNAEVIYGDTDSVMVLFGVSTVEAAMNLGREAAEYISGTFMKPIKL 782

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD  LL K +   CL +I
Sbjct: 783  EFEKVYYPYLLISKKRYAGLLWTNPDK--FDKMDTKGIETVRRDNCLLVKNLVKECLHKI 840

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R     V+ + N++     D+   ++ L   VITK LTK  + Y       HV++A 
Sbjct: 841  LIDRDIPGAVQYVKNTI----ADLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELAE 894

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++   +T  + GD VPY+I         ++ G     R  D +   +    ID  YY 
Sbjct: 895  RMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLENNIPIDPQYYL 947

Query: 1258 SQQIHPVVSRLCASI 1272
              QI   + R+   I
Sbjct: 948  ENQISKPLLRIFEPI 962


>gi|340623568|ref|YP_004742021.1| DNA polymerase Pol2 [Methanococcus maripaludis X1]
 gi|339903836|gb|AEK19278.1| DNA polymerase Pol2 [Methanococcus maripaludis X1]
          Length = 784

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 186/666 (27%), Positives = 309/666 (46%), Gaps = 113/666 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K D D++  +N   FD   L  RA+       +  K+G  K  E  K
Sbjct: 199  EKELIKRI-IEILK-DYDIIYTYNGDNFDFPYLKKRAESF----GLELKLG--KNDEKIK 250

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +   +  + +VG 
Sbjct: 251  ITKG----GMNSK----SYIPGRVHIDLYPIARRLLNLTKYRLENVTEALFDVKKVDVGH 302

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+  L+    L+EY   DA+ +  +      LPL    + +         + + +
Sbjct: 303  ENIPKMWDNLDET--LVEYSHQDAYYTQRIGEQF--LPLEIMFSRVVNQSLYDINRMSSS 358

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL        I P                                    N  S 
Sbjct: 359  QMVEYLLLKNSYKMGVIAP------------------------------------NRPSG 382

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------- 932
             +++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +N+   T++       
Sbjct: 383  KEYQKRIRS-SYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCSDE 440

Query: 933  --RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS-----GLKIQQLDIQQQ 985
                 + ++ H    K+ G++P+ L +L+ RR+ VK  ++  +       + Q LD +Q+
Sbjct: 441  ENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREKAEKGEFDEEYQILDYEQR 500

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ++K+ ANS YG L F  +R+Y++  AE+ T  GR+ ++ T++  + N   +VIY DTD  
Sbjct: 501  SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAE-NFGFKVIYADTDGF 559

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKC--------LEIDLDGLYKRMLLLKKKKYAAV 1097
                  D   K K    +++++  +  K         +E++ +G +KR + + KKKYA +
Sbjct: 560  YSKWADD---KEKLSKDELLEKTREFLKNINNTLPGEMELEFEGYFKRGIFVTKKKYALI 616

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
                      E I  KGL++VRRDWS +SK      L+ +L E S E+  + I +++   
Sbjct: 617  DEN-------EKITVKGLEVVRRDWSNVSKNTQKNVLNALLKEGSVENAKKVIQDTI--- 666

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             ++++ G+V  E  +I   LTK  E Y      PHV+VA ++ +SG     + GD + YI
Sbjct: 667  -KELKDGKVNNEDLLIHTQLTKRIEDYKTT--APHVEVAKKILKSG--NRVNVGDVISYI 721

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
            I      +SG+   I++RA   +  K        D +YY   QI P V RL  ++ G + 
Sbjct: 722  I------TSGNK-SISERAEILENAKN------YDTNYYIENQILPPVIRLMEAL-GITK 767

Query: 1278 ERLADC 1283
            + L D 
Sbjct: 768  DELKDS 773


>gi|262176855|gb|ACY27482.1| DNA polymerase delta [Xenopus laevis]
          Length = 1108

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 193/684 (28%), Positives = 321/684 (46%), Gaps = 102/684 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS VLC E  E ALL      +  +D D++ G+NI  FD+  L++RAQ  +V  S +
Sbjct: 366  SIVGSQVLCFER-EDALLKAWAEFVRIIDPDIITGYNIQNFDMPYLINRAQTLKV--STF 422

Query: 687  SKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SY 740
              +GR+ RS    +R     F S   G     +    GR+  D     + LLR+    SY
Sbjct: 423  PFLGRI-RSLKSVIRDSS--FQSKQMGRRENKVINTEGRVQFDLL---QVLLRDYKLRSY 476

Query: 741  SLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPL 798
            +L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +  
Sbjct: 477  TLNAVSFHFLQEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLEKLMCVIN 535

Query: 799  TRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
              ++  ++G      L +G + + V  LL  A +             ++  M   RS  G
Sbjct: 536  YMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMK-------------QDLVMPVVRSEGG 582

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                       ED                    Y G  V+EP KG YD  I  LDF+SLY
Sbjct: 583  -----------ED--------------------YTGATVIEPLKGYYDVPIATLDFSSLY 611

Query: 918  PSIIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRR 962
            PSI+  +N+C+TT+ +S      GL P            + +S   G+LPE+L+NL+  R
Sbjct: 612  PSIMMAHNLCYTTLLQSGSVEKYGLNPEDFIKTPTGDCFVKASVRKGLLPEILENLLCAR 671

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  KT +K  +   K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR++
Sbjct: 672  KRAKTELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 731

Query: 1022 LRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +  T  LV++   L+        VIYGDTDS+M   G+  +A+A  +  +  + V+  + 
Sbjct: 732  IEKTKQLVESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVAEAMELGREAAEWVSSHFT 791

Query: 1074 -CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + 
Sbjct: 792  PPIKLEFEKVYFPYLLINKKRYAGLYFS-SSANTHDKMDCKGIETVRRDNCPLVANLINT 850

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            CL +IL +R     VE   +    V  D+   ++ + + VITK LT+  + Y  A  Q H
Sbjct: 851  CLQKILIDRDPMGAVEHAKD----VISDLLCNRIDISQLVITKELTRTADEY--AGKQAH 904

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A R+++    +  + GD VPY+I        G++ G+A   +  D +   +    ID
Sbjct: 905  VELAERMRKRDPGSAPNLGDRVPYVII-------GAAKGVAAYMKSEDPIYVLENNIPID 957

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
              YY  QQ+   + R+   I G S
Sbjct: 958  TQYYLEQQLAKPLLRIFEPILGES 981


>gi|383855586|ref|XP_003703291.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Megachile
            rotundata]
          Length = 1091

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 179/683 (26%), Positives = 312/683 (45%), Gaps = 98/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  +  E+ LL +    + +LD D+  G+NI+ FD   L++RAQ   V    ++ 
Sbjct: 351  VGSQVLSFDK-EQMLLEKWADFVRQLDPDIFTGYNINNFDFPYLINRAQHLNVKD--FNF 407

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K   +  + K + I     G          GR+  D +L      +  SY+L  ++
Sbjct: 408  LGRIK--NIKSVIKTKVIQSKQMGRRENKSVNFEGRVPFDLYLVLVRDYKLRSYTLNAVS 465

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 466  YHFLQEQKEDVH-HSIITELQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 524

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   + + Y++P                          
Sbjct: 525  VTGVSIASLLTRGQQIKVVSQLLRKIKDRDYLMPG------------------------- 559

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             H+       Y G  V+EPK+G Y+  I  LDF+SLYPSII  +
Sbjct: 560  -----------------HQGQGGDEQYEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAH 602

Query: 925  NICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT                V R+P   +  + ++   G+LPE+L+NL+  R++ K  
Sbjct: 603  NLCYTTLLNNESQHKYKIDPDNVTRTPSNSM-FIKANVRKGILPEILENLLTARKVAKAE 661

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 662  LKKETDPLKQKVLDGRQYALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRTMIERTKQ 721

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V++          +  VIYGDTDS+M+  G+  I +A  +  +  + V  K+ K ++++
Sbjct: 722  EVEDQFCVLKGYKNDAVVIYGDTDSVMVKFGVKTIEEAMELGKEAAEYVTSKFLKPIKLE 781

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L
Sbjct: 782  FEKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLL 839

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R+  D +    N   ++  D+   ++ + + V+TK LTK          Q HV++A +
Sbjct: 840  IDRNPNDAL----NYAKQIISDLLCNRIDISQLVVTKELTKTDY----TAKQAHVELAAK 891

Query: 1199 LKQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            +K+    T    GD VPY+ I   +GT +       Q+A  P  + + +    ID +YY 
Sbjct: 892  MKKRDAGTAPKLGDRVPYVFIKAAKGTPA------YQKAEDPIYVLENNVP--IDTNYYL 943

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+   I G   E L
Sbjct: 944  ENQLSKPLVRIFEPILGEKAESL 966


>gi|113931510|ref|NP_001039204.1| DNA-directed DNA polymerase delta 1 [Xenopus (Silurana) tropicalis]
 gi|89268922|emb|CAJ83173.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Xenopus
            (Silurana) tropicalis]
          Length = 1109

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 190/684 (27%), Positives = 319/684 (46%), Gaps = 100/684 (14%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
            +S  GS VLC +  E ALL      +  +D D++ G+NI  FD+  L++RAQ  +VP+  
Sbjct: 366  SSIVGSQVLCFDR-EDALLKAWADFVRTIDPDIITGYNIQNFDMPYLINRAQTLKVPN-- 422

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---S 739
            +  +GR+ RS    +R     F S   G     +    GR+  D     + LLR+    S
Sbjct: 423  FPFLGRI-RSMKSVIRDSS--FQSKQMGRRENKVINTEGRVQFDLL---QVLLRDYKLRS 476

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLP 797
            Y+L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + LM  L  + 
Sbjct: 477  YTLNAVSFHFLQEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLMEKLMCVI 535

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
               ++  ++G      L   +  +V   LL     +  ++P     VK         + G
Sbjct: 536  NYMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP----VVK---------SEG 582

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
             ED                              Y G  V+EP KG YD  I  LDF+SLY
Sbjct: 583  GED------------------------------YTGATVIEPLKGYYDVPIATLDFSSLY 612

Query: 918  PSIIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRR 962
            PSI+  +N+C+TT+ +S      GL P            + +S   G+LPE+L+NL+  R
Sbjct: 613  PSIMMAHNLCYTTLLQSGSIDKYGLSPEDFIKTPTGDCFVKASIRKGLLPEILENLLCAR 672

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  K  +K  +   K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR++
Sbjct: 673  KRAKAELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 732

Query: 1022 LRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +  T  LV++   L+        VIYGDTDS+M   G+  + +A  I  +  + V+  + 
Sbjct: 733  IEKTKQLVESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVVEAMEIGREAAEWVSSHFT 792

Query: 1074 -CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + 
Sbjct: 793  PPIKLEFEKVYFPYLLINKKRYAGLYFS-SSANTHDKMDCKGIETVRRDNCPLVANLINT 851

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            CL +IL +R     VE   +    V  D+   ++ + + VITK LT+  + Y  A  Q H
Sbjct: 852  CLQKILIDRDPMGAVEHAKD----VISDLLCNRIDISQLVITKELTRTADEY--AGKQAH 905

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A R+++    +  + GD VPY+I        G++ G+A   +  D +   +    ID
Sbjct: 906  VELAERMRKRDPGSAPNLGDRVPYVII-------GAAKGVAAYMKSEDPIYVLENNIPID 958

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
              YY  QQ+   + R+   I G S
Sbjct: 959  TQYYLEQQLAKPLLRIFEPILGES 982


>gi|147899700|ref|NP_001087694.1| DNA-directed DNA polymerase delta 1 [Xenopus laevis]
 gi|51895814|gb|AAH81093.1| Pold protein [Xenopus laevis]
          Length = 1109

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 193/684 (28%), Positives = 321/684 (46%), Gaps = 102/684 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS VLC E  E ALL      +  +D D++ G+NI  FD+  L++RAQ  +V  S +
Sbjct: 367  SIVGSQVLCFER-EDALLKAWAEFVRIIDPDIITGYNIQNFDMPYLINRAQTLKV--STF 423

Query: 687  SKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SY 740
              +GR+ RS    +R     F S   G     +    GR+  D     + LLR+    SY
Sbjct: 424  PFLGRI-RSLKSVIRDSS--FQSKQMGRRENKVINTEGRVQFDLL---QVLLRDYKLRSY 477

Query: 741  SLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPL 798
            +L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +  
Sbjct: 478  TLNAVSFHFLQEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLEKLMCVIN 536

Query: 799  TRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
              ++  ++G      L +G + + V  LL  A +             ++  M   RS  G
Sbjct: 537  YMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMK-------------QDLVMPVVRSEGG 583

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
                       ED                    Y G  V+EP KG YD  I  LDF+SLY
Sbjct: 584  -----------ED--------------------YTGATVIEPLKGYYDVPIATLDFSSLY 612

Query: 918  PSIIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRR 962
            PSI+  +N+C+TT+ +S      GL P            + +S   G+LPE+L+NL+  R
Sbjct: 613  PSIMMAHNLCYTTLLQSGSVEKYGLNPEDFIKTPTGDCFVKASVRKGLLPEILENLLCAR 672

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  KT +K  +   K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR++
Sbjct: 673  KRAKTELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 732

Query: 1022 LRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +  T  LV++   L+        VIYGDTDS+M   G+  +A+A  +  +  + V+  + 
Sbjct: 733  IEKTKQLVESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVAEAMELGREAAEWVSSHFT 792

Query: 1074 -CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + 
Sbjct: 793  PPIKLEFEKVYFPYLLINKKRYAGLYFS-SSANTHDKMDCKGIETVRRDNCPLVANLINT 851

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            CL +IL +R     VE   +    V  D+   ++ + + VITK LT+  + Y  A  Q H
Sbjct: 852  CLQKILIDRDPMGAVEHAKD----VISDLLCNRIDISQLVITKELTRTADEY--AGKQAH 905

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A R+++    +  + GD VPY+I        G++ G+A   +  D +   +    ID
Sbjct: 906  VELAERMRKRDPGSAPNLGDRVPYVII-------GAAKGVAAYMKSEDPIYVLENNIPID 958

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
              YY  QQ+   + R+   I G S
Sbjct: 959  TQYYLEQQLAKPLLRIFEPILGES 982


>gi|297793989|ref|XP_002864879.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
            lyrata subsp. lyrata]
 gi|297310714|gb|EFH41138.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1092

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 183/674 (27%), Positives = 306/674 (45%), Gaps = 101/674 (14%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
             G +V+  E+    LL  R +I    +D D+++G+NI  FDL  L+ RA    +    + 
Sbjct: 357  VGVDVMSFETEREVLLAWRDLIR--DVDPDIIIGYNICKFDLPYLIERAATLGIEE--FP 412

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             +GR+K S   ++R   + F S   G      + I GR   D         +  SYSL  
Sbjct: 413  LLGRVKNS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNS 469

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L++ +++V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++
Sbjct: 470  VSAHFLSEQKEDVH-HSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 528

Query: 803  TNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
              ++G      L  AR Q ++ L  LL   + K  ++P+          AKQ        
Sbjct: 529  ARVTGVPISFLL--ARGQSIKVLSQLLRKAKQKNLVLPN----------AKQ-------- 568

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                    G     Y G  VLE + G Y+K I  LDF SLYPSI
Sbjct: 569  -----------------------SGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSI 605

Query: 921  IQEYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            +  YN+C+ T                V R+P G    +  S   G+LPE+L+ L+  R+ 
Sbjct: 606  MMAYNLCYCTLVTPEDVRKLNLPPEHVTRTPSGET-FVKQSLQKGILPEILEELLTARKR 664

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K A   L+   LD +Q ALK++ANS+YG  G +N +     ++  +T  GR+++ 
Sbjct: 665  AKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATNGQLPCLEISSSVTSYGRQMIE 724

Query: 1024 STVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T  LV++          N EVIYGDTDS+M+  G+ D+  A  +  +  + ++  + K 
Sbjct: 725  QTKKLVEDKFTTLGGYEYNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHISGTFIKP 784

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD  LL K +    L
Sbjct: 785  IKLEFEKVYFPYLLINKKRYAG--LLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESL 842

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            ++IL +R      E++  ++     D+   ++ L   VITK LTK  + Y       H +
Sbjct: 843  NKILIDRDVPGAAENVKKTI----SDLLMNRIDLSLLVITKGLTKTGDDY--EVKSAHGE 896

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+++   +T  + GD VPY+I         ++ G     R  D +        ID +
Sbjct: 897  LAERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLQNNIPIDPN 949

Query: 1255 YYASQQIHPVVSRL 1268
            YY   QI   + R+
Sbjct: 950  YYLENQISKPLLRI 963


>gi|449451191|ref|XP_004143345.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cucumis
            sativus]
          Length = 1086

 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 181/676 (26%), Positives = 307/676 (45%), Gaps = 97/676 (14%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            AG +VL  ++    LL  R +I   ++D D+++G+NI  FDL  L+ RA+  ++P   + 
Sbjct: 349  AGVDVLSFDTERDVLLAWRDLIR--EVDPDIIIGYNICKFDLPYLIERAEALKIPE--FP 404

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLT 743
             +GR++ S   K+R   T F S   G        + GR+  D   +  RD   ++S    
Sbjct: 405  LLGRIRNS---KVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQVMQRDY--KLSSYSL 459

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
                +    ++KE   H ++   Q    E+   L  Y   DA+L   L+  L  +    +
Sbjct: 460  NSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVE 519

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L   ++ +V   LL   + K  ++P+              + H   D+
Sbjct: 520  MARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPN--------------AKHAGSDQ 565

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                         Y G  VLE + G Y+K I  LDF SLYPSI+
Sbjct: 566  G---------------------------TYEGATVLEARAGFYEKPIATLDFASLYPSIM 598

Query: 922  QEYNICFTTVERSPDGLVPHLPS---SKT------------TGVLPELLKNLVQRRRMVK 966
              YN+C+ T+    D    +LP    +KT             G+LPE+L+ L+  R+  K
Sbjct: 599  MAYNLCYCTLVTPEDACKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAK 658

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K A    +   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T
Sbjct: 659  ADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHT 718

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
              LV++          N EVIYGDTDS+M+  G+  +  A  +  +    ++  + K ++
Sbjct: 719  KKLVEDKFTTLGGYKHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAADYISGTFIKPIK 778

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +   + +   ++ ++ KG++ VRRD  LL K + + CL +
Sbjct: 779  LEFEKVYYPYLLISKKRYAGLF--WTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHK 836

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +R     V+ + N++     D+   +V L   VITK LTK  + Y       HV++A
Sbjct: 837  ILIDRDVPGAVQYVKNTI----SDLLMNRVDLSLLVITKGLTKTGDDY--EVKAAHVELA 890

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +T  + GD VPY+I         ++ G     R  D +   +    ID  YY
Sbjct: 891  ERMRKRDAATAPNVGDRVPYVIV-------KAAKGAKAYERSEDPIYVLENSIPIDPQYY 943

Query: 1257 ASQQIHPVVSRLCASI 1272
               QI   + R+   I
Sbjct: 944  LENQISKPLLRIFEPI 959


>gi|307167251|gb|EFN60939.1| DNA polymerase delta catalytic subunit [Camponotus floridanus]
          Length = 1092

 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 181/682 (26%), Positives = 308/682 (45%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  +  E  +L +    + +LD D+  G+NI+ FD   L++RAQ   V +  ++ 
Sbjct: 352  VGCQVLSFDK-ENLMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRAQHLNVKN--FNF 408

Query: 689  IGRLKRSEMPKLRKGRTI----FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
            +GR+K   +  + K R +     G   +  I     GR+  D  L      +  SYSL  
Sbjct: 409  LGRIK--NIKSVIKDRVLQSKQLGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYSLNA 464

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            ++   L + +++V   D+  +     ++   L  Y   DA+L + L+  L  + +  ++ 
Sbjct: 465  VSYHFLQEQKEDVHYKDITSLQNGNSQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMA 524

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   R K Y++P     V + ++  ++          
Sbjct: 525  RVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLIP-----VHQGQVVDEQ---------- 569

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       + G  V+EPK+G Y+  I  LDF+SLYPSII  
Sbjct: 570  ---------------------------FEGATVIEPKRGYYNSPIATLDFSSLYPSIIMA 602

Query: 924  YNICFTT-----------VERSPDGLVP----HLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            +N+C+TT           ++     + P     + S+   G+LPE+L+NL+  R+  K  
Sbjct: 603  HNLCYTTLLTLAKKRELNIQEDQVTVTPSNSLFIKSTVRKGILPEILENLLAARKKAKAE 662

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 663  LKQETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIEQTKQ 722

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+N+  +E        VIYGDTDS+M+  G++ I  A  +  K    V  K+ K ++++
Sbjct: 723  EVENHFRIENGYKNDAVVIYGDTDSVMVKFGVESIEDAMELGRKAADYVTSKFIKPIKLE 782

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + F     Y+ ++ KGL+ VRRD   L   + + CL  +L
Sbjct: 783  FEKVYFPYLLINKKRYAG--LYFTKPDKYDKMDCKGLETVRRDNCPLVANMMNTCLQILL 840

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             ER+    V+       ++  D+   ++ L + VITK LTK       A  Q HV++A +
Sbjct: 841  IERNPHAAVDYAK----QIISDLLCNRIDLSQLVITKELTKTDY----AAKQAHVELAAK 892

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +K+         GD V Y+      TS+       Q+A  P  +   +    ID +YY  
Sbjct: 893  MKKRDAGNAPKLGDRVAYVF-----TSAAKGTPAYQKAEDP--VYALENSIPIDTNYYLE 945

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 946  NQLAKPLVRIFEPILGEKAESL 967


>gi|340522830|gb|EGR53063.1| DNA polymerase delta, catalytic subunit [Trichoderma reesei QM6a]
          Length = 1105

 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 192/694 (27%), Positives = 319/694 (45%), Gaps = 119/694 (17%)

Query: 632  NVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            NV C +++             E  +L+     L ++D D+++G+NIS FD   LL RA+ 
Sbjct: 349  NVFCLDTTSPIVATQILDFEKEEQMLHEWQQFLIRVDPDIIIGYNISNFDFPYLLDRAKH 408

Query: 679  CRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRD 733
             +V     WS+I        P  R   T F S   G      +   GRL  D   L  RD
Sbjct: 409  LKVQGFEYWSRI-----PSKPS-RVKETNFSSKQIGNRDTKATNTNGRLQLDMLQLVQRD 462

Query: 734  L-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
              LR  SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM 
Sbjct: 463  HHLR--SYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMD 520

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKM 849
             LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P+         +
Sbjct: 521  KLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIPN---------I 569

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
            A Q    G ED+                             Y G  V+EP +G YD  I 
Sbjct: 570  APQ----GSEDQ-----------------------------YEGATVIEPTRGYYDVPIA 596

Query: 910  LLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLPSSKTTGVLP 952
             LDF SLYPSIIQ +N+C+TT      VER           +P+G +  + ++K  G+L 
Sbjct: 597  TLDFASLYPSIIQAHNLCYTTLLRPGDVERFKLKKDEDYIVTPNGDM-FVTATKRKGLLA 655

Query: 953  ELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            ++L+ L+  R+  K  + +     K   L+ +Q ALK++ANS+YG  G +  +     +A
Sbjct: 656  QILEELLSARKQAKRELAQETDPFKKAVLNGRQLALKVSANSVYGLTGATTGKLPCLAIA 715

Query: 1012 ELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
               T  GR+++  T   V+    +        +VIYGDTDS+M+  G  D+A+A  +  +
Sbjct: 716  SSTTSFGRQMIEKTKREVEEKYTIANGYTHDAQVIYGDTDSVMVKFGTKDLAEAMKLGEE 775

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              + V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ VRRD 
Sbjct: 776  ASKYVSAKFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTRTEKYDKMDTKGLETVRRDN 833

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
             LL++ V +  L  IL +R  +   + + +++     D+   ++ + K VITK LTK  E
Sbjct: 834  CLLAQTVIEKVLRMILIDRDVQGAQDYVKSTIA----DLLQNKIDMSKLVITKALTK--E 887

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y  A  Q HV++A R+K+    +    GD V Y++          + G     +  D +
Sbjct: 888  DY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------RGAAGAKNFEKSEDPI 938

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
               +    ID  YY   Q+   + R+   I G +
Sbjct: 939  YVLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 972


>gi|443899075|dbj|GAC76406.1| ribonucleotide reductase, alpha subunit [Pseudozyma antarctica T-34]
          Length = 1160

 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 210/817 (25%), Positives = 361/817 (44%), Gaps = 133/817 (16%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSS-SKHVAEVPPV 552
            F++  K+ G +W+ I++  +   P  Q+VS C+ E+  D   D  VS +     ++V P+
Sbjct: 312  FMIDLKIVGMNWIRINEANYKLRPESQKVSLCQIEL--DCSCDALVSHAPDAEWSKVAPL 369

Query: 553  TVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVR 607
             + + ++     K VF +   V+ ++  + +   + +  TP + + +      SH     
Sbjct: 370  RILSFDIECAGRKGVFPE-PSVDPVIQIANMVTRQGE-STPFVKNVFTL-NTCSHIV--- 423

Query: 608  KLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                G   + FNKE                     +L      + ++D DV++G+NI+ F
Sbjct: 424  ----GSQVLSFNKEID-------------------MLEAWTKFVQEVDPDVVIGYNIANF 460

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
            D   LL RA+  +  S+ ++ +GR +  R+E  +       +G+  S    + + GRL  
Sbjct: 461  DFPYLLDRAKALK--STKFAYLGRERGVRTEAKETHFSSKAYGTRDSKN--TELQGRLQL 516

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDA 783
            D     +   +  SYSL  ++   L + +++V  H ++   Q    ES   L  Y   DA
Sbjct: 517  DMLQVMQRDYKLRSYSLNSVSFEFLGEQKEDVH-HSLITELQNAGPESRRRLAVYCLKDA 575

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +L   LM  L       ++  ++G  +   L   +  +V   L        Y+VP    Y
Sbjct: 576  YLPQRLMDKLMCFINYIEMARVTGVPFNYLLSRGQQIKVVSQLFRKANEDNYLVP---AY 632

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
              E          G ED+                             Y G  VLEPK G 
Sbjct: 633  KGE----------GTEDQ-----------------------------YEGATVLEPKAGY 653

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDGL----------VPHLPSSKT---- 947
            YD+ I  LDF SLYPS++  +N+C+TT+  +++ D L           P+     T    
Sbjct: 654  YDRPIATLDFASLYPSVMMAHNLCYTTLLDKKTIDRLDLKQDEDYVVTPNNNCFATKKLR 713

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L+NL+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  +  
Sbjct: 714  KGLLPTVLENLLAARKRAKADLKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLP 773

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAK 1058
               ++   T  GR+++  T   V+ +  +        EV+YGDTDS+MI  G+ D+AKA 
Sbjct: 774  CLEISMSTTAYGRQMIDQTKAYVERHYTIANGYQHDAEVVYGDTDSVMIKFGVPDLAKAM 833

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +    V+K +   ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ 
Sbjct: 834  ELGAEAAALVSKTFVDPIKLEFEKVYFPYLLISKKRYAG--LYWTKPEKYDKMDTKGIET 891

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L + V D CL ++L +R  +   E   N    +  D+   +V + + VITK L
Sbjct: 892  VRRDNCRLVQTVIDTCLRKMLIDRDVKGAEEYAKN----IISDLLQNKVDMSQLVITKAL 947

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
             K       A  Q HV++A R+++    +  + GD V Y+I         ++ G A   R
Sbjct: 948  AKADY----AAKQAHVELAERMRKRDAGSAPALGDRVAYVIV-------KAAKGAAAYER 996

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              D +   D    ID  YY   Q+   + R+   I G
Sbjct: 997  SEDPIYVLDHNIPIDTRYYLENQLAKPLLRIFEPIMG 1033


>gi|342179963|emb|CCC89437.1| putative DNA polymerase delta catalytic subunit [Trypanosoma
            congolense IL3000]
          Length = 1026

 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 180/679 (26%), Positives = 315/679 (46%), Gaps = 94/679 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM--W 686
            AG+NV   E+ E  LL  L   + ++D D+L G+N+  FD   LL R    +V  +   W
Sbjct: 286  AGANVHSYETEEEMLLAWLRF-VKEIDPDILTGYNVCKFDFPYLLDRGSTLKVSEAFHYW 344

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
             +    +     K  + R +   G        + GR++ D     +   +  +YSL  ++
Sbjct: 345  GRQINERTVHREKKFQSRQM---GNREYTELTMEGRVIMDAMSVIQRDYKLRAYSLNAVS 401

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            +  L + +++V  H ++   Q    E+   L  Y   DA+L ++L+  L V+    ++  
Sbjct: 402  QHFLGEQKEDVH-HSIISDLQQGNDETRRRLAVYCLKDAYLPVKLLDRLMVVVNNVEMAR 460

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L+  +  +V  +LL   RA+  +VP                          
Sbjct: 461  VTGVPIAWLLERGQQIKVFSMLLRKARARNLVVP-------------------------- 494

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
              T E++  D           +RG  Y G  V+EP+KG Y+  I+ LDF SLYPSII  +
Sbjct: 495  --TTENSGID-----------QRG--YEGATVIEPRKGFYNCPIVTLDFASLYPSIIIAH 539

Query: 925  NICFTT--------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            N+C++T              + R+P G V  +  +   G+LPE+L++L+  R+  +T MK
Sbjct: 540  NLCYSTLVRQSEADKYDKDMISRTPTGHV-FVRDNVFPGILPEVLQDLLAARKNARTLMK 598

Query: 971  TAS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
              S   L+ + L+ +Q ALK++ANS+YG  G    R     L+  +T  GR ++  T   
Sbjct: 599  DVSPDSLEYKVLNGRQLALKVSANSVYGFTGAQIGRLPCLELSSSVTGYGRMMIDETKRF 658

Query: 1029 VQNNLN-LEVIYGDTDSIMIH-------SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+       V+YGDTDS+MI        S  D + +A     +  + V+  + K ++++ 
Sbjct: 659  VETQYQGAMVVYGDTDSVMIKRVSEEPMSDKDSLQRAMEFGKEAAEVVSSNFPKPIKLEF 718

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + + + + ++ ++ KG++ VRRD   L   V    L++IL 
Sbjct: 719  EKVYFPYLLMNKKRYAG--LLWTNTVRHDKLDAKGIETVRRDNCPLVASVISGVLNRILI 776

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +RS E  VE +  ++     D+   ++ + + VITK+ +K  + Y  A  Q H+ +  R+
Sbjct: 777  QRSVESAVEFVKGTI----RDLLLNRLDISQLVITKSFSKSEDEYAGA--QAHIALVERM 830

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            ++   ++  + GD V Y+I         ++ G     R  D +   D    ID  YY   
Sbjct: 831  RKRDPASAPNVGDRVAYVIV-------RAAKGSKAYERSEDPIYVLDNNIPIDTQYYLEH 883

Query: 1260 QIHPVVSRLCASIEGTSPE 1278
            Q+ P + R+    EG  P+
Sbjct: 884  QLAPPLLRV---FEGVIPD 899


>gi|224083478|ref|XP_002307042.1| predicted protein [Populus trichocarpa]
 gi|222856491|gb|EEE94038.1| predicted protein [Populus trichocarpa]
          Length = 1081

 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 181/666 (27%), Positives = 308/666 (46%), Gaps = 96/666 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER +L      + ++D D+++G+NI  FDL  L+ RA    +  S +  +GR++ S   
Sbjct: 353  TEREVLIAWKEFIREVDPDIIIGYNICKFDLPYLIERAATLGI--SEFPVLGRIRNS--- 407

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            ++R     F S   G        + GR+  D     +   +  SYSL  ++   L++ ++
Sbjct: 408  RVRIKDATFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKE 467

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    E+   L  Y   DA+L   L+  L ++    ++  ++G      
Sbjct: 468  DVH-HSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMLIYNYVEMARVTGVPLSFL 526

Query: 814  LQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            L  AR Q ++ L  LL   + K  ++P                       NV++  +E  
Sbjct: 527  L--ARGQSIKVLSQLLRKAKEKNLVIP-----------------------NVKQAGSE-- 559

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                        +GK    Y G  VLEPK G Y+K I  LDF SLYPSI+  YN+C+ T+
Sbjct: 560  ------------QGK----YEGATVLEPKAGFYEKPIATLDFASLYPSIMMAYNLCYCTL 603

Query: 932  ERSPDGLVPHLP---------------SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
                D    +LP               S+   G+LPE+L+ L+  R+  K  +K A    
Sbjct: 604  VTPEDVRKLNLPPECINKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPF 663

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL-- 1033
            +   LD +Q ALK++ANS+YG  G + ++     ++  +T  GR+++  T  LV++    
Sbjct: 664  EKAVLDGRQLALKISANSVYGFTGATVAQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTI 723

Query: 1034 ------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                  N EVIYGDTDS+M+  G+  +  A  +  +  + ++  + K ++++ + +Y   
Sbjct: 724  LGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAECISGTFIKPIKLEFEKVYYPY 783

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   ++ ++ KG++ VRRD  LL K +   CL +IL +R     
Sbjct: 784  LLISKKRYAGLFWTNPD--KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDVPGA 841

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V+ + N++     D+   ++ L   VITK LTK  + Y       HV++A R+++   +T
Sbjct: 842  VQFVKNTI----SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELAERMRKRDAAT 895

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
              + GD VPY+I          + G     +  D +   +    ID  YY   QI   + 
Sbjct: 896  APNVGDRVPYVII-------KGAKGAKAFEKSEDPIYVLENNIPIDPQYYLENQISKPLL 948

Query: 1267 RLCASI 1272
            R+   I
Sbjct: 949  RIFEPI 954


>gi|73669283|ref|YP_305298.1| replicative DNA polymerase I [Methanosarcina barkeri str. Fusaro]
 gi|72396445|gb|AAZ70718.1| replicative DNA polymerase I [Methanosarcina barkeri str. Fusaro]
          Length = 932

 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 183/690 (26%), Positives = 313/690 (45%), Gaps = 131/690 (18%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ------------VCRVPSSM 685
            + E  +LN+        D D+++G+N   FD+  +  R +            V R  S +
Sbjct: 251  TDETEMLNKFFEIFCDYDPDIVIGYNHQDFDIPYITDRVKTLVSEGNSINPVVGRDGSKI 310

Query: 686  -WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             + K G + R+EM                       GR++ D     R       Y+L  
Sbjct: 311  GYRKFGLITRTEM----------------------KGRVVVDALPLVRRAFSLKQYTLRA 348

Query: 745  LAKTQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            ++K  L++++ +V P ++ + +  T E   + ++Y   DA L++EL+ +L +L     L 
Sbjct: 349  VSKELLSREKLDVPPLEMEEYWLDTGEKFKKFVDYSRRDAELALELILNLRLLDKYVALA 408

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             +SG+L  + + G +   VE LLL  F                          G+ DR +
Sbjct: 409  QVSGSLLQEVVDGGQTSMVETLLLKEF--------------------------GLRDRVL 442

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                ++  + +     +D +         GG VLEPKKGL +  +L+LD+ SLYP+I+  
Sbjct: 443  LPKPDDGVSAERYAMSSDLK---------GGEVLEPKKGLLEN-VLILDYKSLYPTIMMA 492

Query: 924  YNICFTTVE----------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TA 972
            +N+C+TTV           R P G    +PS    G++P +L++L+ +R   K  M+ T+
Sbjct: 493  HNLCYTTVVTGDKSDGVTIRPPSG-GEFVPSEVFKGIVPSILEDLLNKRTQTKKRMRGTS 551

Query: 973  SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
            +  + + LD  Q ALK+  NS YG  G++ +R Y+  LA  +T  GR  + +T +++ N 
Sbjct: 552  NENEYRVLDATQLALKILLNSFYGYSGYARARLYSLTLANAVTSFGRSNILNTREIINNT 611

Query: 1033 LN--------------------------LEVIYGDTDSIMIH---SGIDDIAKAKAIAGK 1063
            +                           L V YGDTDS+ +H    G   + +   I  +
Sbjct: 612  IGKIILRNKTALLLDEAGELSPQDRVVELSVAYGDTDSVFVHCKSRGDLSLEEVSLIGNR 671

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
            +   V+      +E++ + + KR LL+ KK+YA    + K+    + I+ KG++ VRRDW
Sbjct: 672  LANIVSVSLPDPMELEFESIAKRALLIAKKRYALWFFEPKNSGWEDKIKVKGMETVRRDW 731

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPP 1181
              L+    +  L  +L +   +  VE +   + KV+  D       +E  V+T+TLT+  
Sbjct: 732  CELTSVTLNRVLELVLIKGDVDQAVEYVRQIVSKVRNLDPAKDSEIIESLVLTRTLTRKI 791

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
            E+Y +   QPH+ VA  LK+    TG   S G  +P++I   +G           RA  P
Sbjct: 792  ESYKN--KQPHLTVAENLKK---RTGVVPSIGTRIPFVITAGKGL-------FVDRAEDP 839

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            D +++ +    ID+DYY  +QI P V R+ 
Sbjct: 840  DYVREKN--IPIDVDYYIKKQILPPVERIL 867


>gi|156337916|ref|XP_001619919.1| hypothetical protein NEMVEDRAFT_v1g149821 [Nematostella vectensis]
 gi|156203982|gb|EDO27819.1| predicted protein [Nematostella vectensis]
          Length = 266

 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/273 (45%), Positives = 171/273 (62%), Gaps = 17/273 (6%)

Query: 1064 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDW 1122
            V  EVNK Y+ LEID+DG++K MLLLKKKKYAA+ + + +DG   EV E KGLD+VRRDW
Sbjct: 1    VKSEVNKLYRLLEIDIDGIFKSMLLLKKKKYAAIMISENEDGTMNEVKEMKGLDIVRRDW 60

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L+K+ G++ LSQILS +S E +V+++H+ L+ + ED++ G+V L+KYVI K LTK P 
Sbjct: 61   CDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITIGEDVKGGKVDLQKYVINKQLTKAPH 120

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG-IAQRARHPDE 1241
             YPD K+ PHV VAL L       G   GDT+PY+IC         + G +     H  E
Sbjct: 121  DYPDKKSLPHVHVALWLMSKSRKVG--VGDTIPYVICDVSMHLPLVTCGALVHYLLH--E 176

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG--LDPSKFQSKPSETM 1299
             +K D    ID  YY + Q+HPVV+RLC  I+GT   R+A+CLG  L PS ++   + T 
Sbjct: 177  FRKSDS-LKIDTKYYLANQVHPVVARLCDPIDGTDSARIAECLGGILHPSGYRH--AATR 233

Query: 1300 SSDPSSSLL---FAVGDEERY---RGCEPLILS 1326
              + + +LL     + DEER+   RG  P IL+
Sbjct: 234  HDEEADALLGRHAQMTDEERFKVSRGDMPSILT 266


>gi|307203676|gb|EFN82660.1| DNA polymerase delta catalytic subunit [Harpegnathos saltator]
          Length = 1054

 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 184/681 (27%), Positives = 305/681 (44%), Gaps = 94/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E  +L +    + +LD D+  G+NI+ FD   L++RAQ   V +  +S 
Sbjct: 314  VGCQVLSFEK-ESLMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRAQHLNVQN--FSF 370

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  RS +          G   +  I     GR+  D  L      +  SYSL  ++
Sbjct: 371  LGRIKNIRSVIKDHVLQSKQLGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYSLNAVS 428

Query: 747  KTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
               L + +++V   D+  +     ++   L  Y   DA+L + L+  L  + +  ++  +
Sbjct: 429  YHFLQEQKEDVQHKDITGLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMARV 488

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G      L   +  +V   LL   R K Y++P                 HG +++    
Sbjct: 489  TGVSISSLLTRGQQIKVVSQLLRKTREKDYLMP-------------VHQGHGTDEQ---- 531

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     + GG V+EPK+G Y+  I  LDF+SLYPSII  +N
Sbjct: 532  -------------------------FEGGTVIEPKRGYYNDPIATLDFSSLYPSIIMAHN 566

Query: 926  ICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            +C+TT                V  +P   +  + SS   G+LPE+L+NL+  R+  K  +
Sbjct: 567  LCYTTLLTIAKKKELNIPEDDVNTTPSNSL-FVKSSVRKGILPEILENLLAARKKAKVEL 625

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 626  KQETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISAGVTAYGRTMIERTKQE 685

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+ +  +E        VIYGDTDS+M+  G++ I +A  +  +    V+ K+ K ++++ 
Sbjct: 686  VEEHFRIENGYKNDAIVIYGDTDSVMVKFGVESIVEAMELGKEAADYVSSKFVKPIKLEF 745

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL  +L 
Sbjct: 746  EKVYFPYLLINKKRYAGLYFTKPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQILLI 803

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER+    ++       +V  D+   ++ L + VITK LTK       A  Q HV++A ++
Sbjct: 804  ERNPHAALDYAK----QVISDLLCNRIDLSQLVITKELTKTDY----AAKQAHVELATKM 855

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+         GD V Y+       S+       Q+A  P  +        ID +YY   
Sbjct: 856  KKRDPGNAPKLGDRVAYVF-----ISAAKGAPAYQKAEDP--VYALQNSIPIDTNYYLEN 908

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + R+   I G   E L
Sbjct: 909  QLAKPLVRIFEPILGEKAESL 929


>gi|401828411|ref|XP_003887919.1| DNA polymerase type-B delta catalytic subunit [Encephalitozoon hellem
            ATCC 50504]
 gi|392998927|gb|AFM98938.1| DNA polymerase type-B delta catalytic subunit [Encephalitozoon hellem
            ATCC 50504]
          Length = 974

 Score =  196 bits (499), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 177/656 (26%), Positives = 314/656 (47%), Gaps = 83/656 (12%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E+ LL        ++D D++VG+NI GFDL  +L R ++  +    +S +GR K+    
Sbjct: 256  TEKGLLESWKKYFMEVDPDIIVGYNIKGFDLPYILDRGEILGIND--FSILGRSKKKAKT 313

Query: 699  K-LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            +       +FGS  +  +   I GRL+ D  +  R   +  SYSL  ++   L + +++V
Sbjct: 314  RDTTMSSNMFGSITTTEVE--IDGRLIIDMMVVIRRDYKLRSYSLNSVSIHFLKEQKEDV 371

Query: 758  GPHDVLKM-FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P  + ++  +  +S   +  Y   D  L + L   LSVL    +L+ ++G         
Sbjct: 372  PPSSIGELQSKDKDSRRRIASYCLRDTVLPLRLFSTLSVLINYTELSRVTGVPIDYFFTR 431

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
              A ++  L+      + ++VP                              E   F+++
Sbjct: 432  GTAIKMFALIYRVAAKEDFVVP------------------------------EVDPFESN 461

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV----- 931
             +            + GG V+EPK+G Y+K + ++DF SLYPSI+   N+C+TT+     
Sbjct: 462  RT------------FEGGFVIEPKRGFYNKPVSVMDFTSLYPSIMISNNLCYTTLLTKEQ 509

Query: 932  ERSPDGL-VP----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQ 985
             R   G+  P       + +  G+LP +L +L++ R+ +K  +K      ++  L+ +Q 
Sbjct: 510  YRVLGGIRTPTDNYFCSAERKKGLLPRILVDLLESRKKIKEELKKEKDPALKACLNGRQL 569

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------V 1037
            A+KL ANS+YG  G S  +     +++ +T  GRE++  T +L++ N + +        V
Sbjct: 570  AVKLCANSLYGFTGASKGKLPCFEISQSVTGFGREMINFTKNLIEENFSKKNGYTHDSVV 629

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+MI    +D+ +   ++ ++ + V  K+ + + ++ + +Y   LL+ KK+YA 
Sbjct: 630  IYGDTDSVMIDFNEEDLGRVFEMSKRISEFVTSKFVRPVSLEFEKVYYPYLLINKKRYAG 689

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +     D  P + I+ +G++ VRRD   L KE  +  L  IL +R+    VE     +  
Sbjct: 690  LLYSNPDS-PSK-IDTRGIETVRRDNCGLVKEAVETVLEMILYQRN----VEKAKRFVKD 743

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            V  D+  G++ L   VI+K+LTK  + Y     Q HV++A +L++   ST    GD VPY
Sbjct: 744  VVRDLYLGKIDLSLLVISKSLTKAGDKY--GSRQAHVELAEKLRKRDESTAPVLGDRVPY 801

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            +I  ++G       GIA   +  D +   +    ID +YY  QQ+   + R+   I
Sbjct: 802  VI-VKKGK------GIAAYEKSEDPVYVLENNLPIDTEYYIEQQLSKPLKRIFDPI 850


>gi|435849896|ref|YP_007301837.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
            hollandica DSM 15978]
 gi|433663384|gb|AGB50809.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
            hollandica DSM 15978]
          Length = 924

 Score =  196 bits (498), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 187/691 (27%), Positives = 312/691 (45%), Gaps = 115/691 (16%)

Query: 636  CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS---MWSKIGRL 692
            C  +E  ++N     + + D DVL G N  GFD   ++ R +     S    +  KIGR 
Sbjct: 234  CYDNENDMINAFFSTVREYDPDVLTGFNTDGFDTKYVVDRCKKINTESGTPVINFKIGRD 293

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK 752
             R           +FG+  S      I+GR++ D     R+  +   Y L  +AK  + K
Sbjct: 294  NRD------LNFRVFGATTS----VSISGRIVADVLPLIREGFKLKRYKLENVAKELIGK 343

Query: 753  DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            ++ +V P ++   +     +   IEY   D+ L++EL+  L +L     L  +SG     
Sbjct: 344  EKLDVPPQEMEAYWNDPSKIHTFIEYSRRDSELALELLLKLQLLDKYLALAQVSGRPLQD 403

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
             + G +   VE LL+  FR    +            MA + ++  VE+R           
Sbjct: 404  VINGGQTNLVEQLLMSRFREIDRL------------MAMKPNDEIVEER----------- 440

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV- 931
                         +R     G  VL+PKKGL+   ++  D+ SLYP+I+   N+C+TTV 
Sbjct: 441  -------------ERESNVVGADVLDPKKGLHCNTVVE-DYKSLYPTIMMARNLCYTTVI 486

Query: 932  --ERSPDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LD 981
              + +P   +   PS           G++P +L+ L+ +R   K  MK A     ++ LD
Sbjct: 487  IDKTTPKESMIISPSDGHFIKPEIFKGIIPSILEGLLDKRVATKKMMKNARDENEKRVLD 546

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN------- 1034
              Q ALK+  NS YG  G+  +R ++  +A  +T  GRE +R+T + + N +        
Sbjct: 547  ATQLALKILLNSFYGYSGYIRARLFSLEVANSVTSYGRENIRNTQNTINNEIVTLTIRDN 606

Query: 1035 -------------------LEVIYGDTDSIMIH---------SGIDDIAKAKAIAGKVIQ 1066
                               L  IYGDTDSI IH            +      A+ GK I 
Sbjct: 607  QALTPNESDGTQPNDIIVLLTPIYGDTDSIFIHCTDINGNEFEEEEFTLDMSALVGKKIA 666

Query: 1067 EV--NKKYKCLEIDLDGLYKRMLLLKKKKYAAVKV-QFKDGMPYEVIERKGLDMVRRDWS 1123
            EV  +K  + +E+  +   KR+LL+ KK+YA  +  Q KDG   + I+ KGL+ VRRDW 
Sbjct: 667  EVVTSKLPEPMELQYEATAKRILLVAKKRYAMWQFEQAKDGW-IQKIKVKGLETVRRDWC 725

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE--DMRSGQVALEKYVITKTLTKPP 1181
             L+ +  +  L  IL E   +  +  + + + K+++  D R  +  + +  ++KTL++PP
Sbjct: 726  NLTSKTLNIILEAILKEGDVDKCITYVQDVIAKIRKINDTRD-EAFIAELTLSKTLSRPP 784

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
             +Y +   QPH+ V  ++++ G     + G+ +P++I     T+ GS  G  ++A  P  
Sbjct: 785  SSYKN--KQPHLTVVEKIRERGGQVPIT-GERIPFLI-----TTVGS--GYVEQAEDPAY 834

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            + + +    ID +YY  +QI P   RL  + 
Sbjct: 835  VIEHN--IPIDTNYYIQKQIIPPALRLLETF 863


>gi|45357943|ref|NP_987500.1| DNA polymerase B protein [Methanococcus maripaludis S2]
 gi|44920700|emb|CAF29936.1| DNA polymerase family B [Methanococcus maripaludis S2]
          Length = 784

 Score =  196 bits (498), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 184/663 (27%), Positives = 310/663 (46%), Gaps = 107/663 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R+ IE+ K + D++  +N   FD   L  RA+       +  K+G  K  E  K
Sbjct: 199  EKELIKRI-IEILK-EYDIIYTYNGDNFDFPYLKKRAESF----GLELKLG--KNDEKIK 250

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +   +  + +VG 
Sbjct: 251  ITKG----GMNSK----SYIPGRVHIDLYPIARRLLNLTKYRLENVTEALFDVKKVDVGH 302

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+  L+    L+EY   DA+ +  +      LPL    + +         + + +
Sbjct: 303  ENIPKMWDNLDET--LVEYSHQDAYYTQRIGEQF--LPLEIMFSRVVNQSLYDINRMSSS 358

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL        I P                                    N  S 
Sbjct: 359  QMVEYLLLKNSYKMGVIAP------------------------------------NRPSG 382

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------- 932
             +++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +N+   T++       
Sbjct: 383  KEYQKRIRS-SYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCSDE 440

Query: 933  --RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS-----GLKIQQLDIQQQ 985
                 + ++ H    K+ G++P+ L +L+ RR+ VK  ++  +       + Q LD +Q+
Sbjct: 441  ENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREKAEKGEFDEEYQILDYEQR 500

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            ++K+ ANS YG L F  +R+Y++  AE+ T  GR+ ++ T++  + N   +VIY DTD  
Sbjct: 501  SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAE-NFGFKVIYADTDGF 559

Query: 1046 MIHSGID--DIAKAKAI--AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
                  D   ++K + +    + ++ +N      +E++ +G +KR + + KKKYA +   
Sbjct: 560  YSKWADDKEKLSKYELLEKTREFLKNINNTLPGEMELEFEGYFKRGIFVTKKKYALIDEN 619

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
                   E I  KGL++VRRDWS +SK      L+ +L E S E+  + I +++    ++
Sbjct: 620  -------EKITVKGLEVVRRDWSNVSKNTQKNVLNALLKEGSVENAKKVIQDTI----KE 668

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            ++ G+V  E  +I   LTK  E Y      PHV+VA ++ +SG     + GD + YII  
Sbjct: 669  LKDGKVNNEDLLIHTQLTKRIEDYKTT--APHVEVAKKILKSG--NRVNTGDVISYII-- 722

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
                +SG+   I++RA   +  K        D +YY   QI P V RL  ++ G + + L
Sbjct: 723  ----TSGNK-SISERAEILENAKN------YDTNYYIENQILPPVIRLMEAL-GITKDEL 770

Query: 1281 ADC 1283
             D 
Sbjct: 771  KDS 773


>gi|324120732|dbj|BAJ78757.1| DNA polymerase delta catalytic subunit [Thrips palmi]
          Length = 1091

 Score =  196 bits (498), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 198/776 (25%), Positives = 338/776 (43%), Gaps = 128/776 (16%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  V+ C+  E  +L +    + ++D D+  G+NI+ FD   L++RA+   V +  ++ 
Sbjct: 351  VGCQVISCDK-ETEMLEKWADFVREVDPDIFTGYNITNFDFPYLINRAKHLTVKN--FTY 407

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  ++  + K   +F    G          GR+  D  L      +  SY+L  ++
Sbjct: 408  LGRVK--DIQSVIKESQLFSKQMGRRENKNVNFEGRVPFDLLLVLVRDYKLRSYTLNAVS 465

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q  T ++   L  Y   DA+L + L+  L  +    ++  
Sbjct: 466  YHFLQEQKEDVH-HSVITDLQNGTSQTRRRLAVYCLKDAYLPLRLLEKLMCIINYMEMAR 524

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G   G  L   +  +V   LL   +   YI+P   TY           + G +D+   
Sbjct: 525  VTGVTLGSLLTRGQQIKVVSQLLRKAKEHDYIMP---TY----------QSTGGDDQ--- 568

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EPK+G Y   I  LDF+SLYPSI+  +
Sbjct: 569  --------------------------YEGATVIEPKRGYYGDPISTLDFSSLYPSIMMAH 602

Query: 925  NICFTTV----ERSPDGLVP----HLP-------SSKTTGVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+     R   GL P    H P       +S   G+LPE+L++L+  R+  K  +
Sbjct: 603  NLCYTTLLQANNREKLGLTPDQYSHTPANNYFVKASVRKGLLPEILESLLNARKKAKADL 662

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 663  KKETDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKTE 722

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +E        VIYGDTDS+M+  G+  + +A  +  +  + V  K+ K ++++ 
Sbjct: 723  VETKYRIENGYEHDAVVIYGDTDSVMVKFGVKTLEEAMRLGQEAAEYVTSKFIKPIKLEF 782

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + F     Y+ ++ KGL+ VRRD   L   + + CL +IL 
Sbjct: 783  EKVYFPYLLINKKRYAG--LYFTSADKYDKMDCKGLETVRRDNCPLVANMMNTCLQKILI 840

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+ +  V        +V  D+   ++ +   VITK LTK       A  Q HV++A ++
Sbjct: 841  DRNPDGAVAYAK----QVISDLLCNRIDISNLVITKELTKSDY----AAKQAHVELAAKM 892

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+         GD VPY++       + +S G     +  D +   +    ID  YY   
Sbjct: 893  KKRDPGNAPKLGDRVPYVL-------TSASKGTPAYMKAEDPIYVLENSIPIDFTYYLEN 945

Query: 1260 QIHPVVSRLCASIEGTSPERL---------------------------ADCLGLDPSKFQ 1292
            Q+   + R+   I G   E +                             CLG      +
Sbjct: 946  QLSKPLLRIFEPILGDKAESILLRGDHTRTRAVMTSRVGALSAFTVKRQACLGCKAVLPK 1005

Query: 1293 SKPSETMSS--DPSSSLLFAVGDEERYRGCEP----LILSCPSCSSTFDCPAVCSS 1342
             + +  + S   P+ + LF + + +RYRG E     L   C  C  +     +C+S
Sbjct: 1006 DQEANALCSHCSPNEAKLF-LSELQRYRGLEDRFSRLWTECQRCQGSLHEEVLCTS 1060


>gi|409081586|gb|EKM81945.1| hypothetical protein AGABI1DRAFT_55049 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1089

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 247/1007 (24%), Positives = 425/1007 (42%), Gaps = 189/1007 (18%)

Query: 328  EVD-DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVY-AIPN 385
            E+D D  S+ F  +D  E + G     + ++G  + G   HS   ++ +     Y A+P 
Sbjct: 80   EIDPDQDSIVFQQIDVEEGVDGNGHFGIRMYGVTQEG---HSVMALITDFLPYFYIAVPR 136

Query: 386  GPLFQTDEIMKLEKDAEESRISPMAFRK--KLQDVAL-GLKTEIANQLLNLNVSNYIVSP 442
            G  FQ DE M   K      +     +K  KL    L G + +     L L +S+     
Sbjct: 137  G--FQ-DEDMTAFKGYLNQTVGSNVVQKVEKLAKRTLWGYRGDDKVSFLKLTISD----- 188

Query: 443  VKRRYAFGQAEIPAG-----ENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL-- 495
               + ++G + + AG     E    +    F   P+P             T  S +    
Sbjct: 189  --PKTSYGPSNLYAGSLRLFERAECQFQGLFPSEPVP-------------TFESNIVFTL 233

Query: 496  -FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE---- 548
             F++  KV G +W+ +   K+    +  + S C+ E+       +R  +   H  E    
Sbjct: 234  RFMIDTKVVGMNWIEVPPGKYKLVTSQHKRSHCQIELR------MRYDAFISHPPEGAWS 287

Query: 549  -VPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH 602
             + P+ + + ++     K +F + Q    I  A++V  H    D P              
Sbjct: 288  KIAPLRILSFDIECAGRKGIFPEAQTDPVIQIANMVTRHGE--DKP-------------- 331

Query: 603  FTVVRKLDGGIFPMGFNKEATDRNSKA---GSNVLCCESSERALLNRLMIELYKLDSDVL 659
                           F +   + N+ A   GS VL   + E  L       + ++D DV+
Sbjct: 332  ---------------FIRNVFNLNTCANIVGSQVLTF-TEEAPLFQAWRDFVEEVDPDVI 375

Query: 660  VGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMS 717
             G+NI+ FD   L+ RA+   V +  ++ +GRL+  R+E+         +G   S    +
Sbjct: 376  TGYNIANFDFPYLMDRAKALEVAN--FNYLGRLRNVRTEVKNTHFSSRAYGQRDSKE--T 431

Query: 718  CIAGRLLCDT--FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLME 774
             + GRL  D   F+     LR  SY+L  +    L + +++V    + +++  T ES   
Sbjct: 432  PLYGRLQMDILQFMQREHKLR--SYTLNSVCAQFLGEQKEDVHHSVITELYNGTPESRRR 489

Query: 775  LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKK 834
            L  Y   DA+L   L+  L       ++  ++G  +   L   ++ +V   L      + 
Sbjct: 490  LAVYCLKDAYLPQRLLDKLMCFVNYTEMARVTGVPFNYLLSRGQSIKVLSQLFRKANEEG 549

Query: 835  YIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGG 894
            Y++P                           L  E               G  G AY G 
Sbjct: 550  YVIP--------------------------ALKGE---------------GTDGEAYEGA 568

Query: 895  LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDG 937
             V+EPKKG YD  I  LDF+SLYPSI+  +N+C+TT      +E+           +P+ 
Sbjct: 569  TVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLIEGSMIEKLDLVKDVDYIQTPNN 628

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYG 996
                + S K  G+LP +L++L+  R+  K  +K      K   LD +Q ALK++ANS+YG
Sbjct: 629  DF-FVTSMKRKGLLPTILEDLISARKRAKADLKMEKDPFKKAVLDGRQLALKISANSVYG 687

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIH 1048
              G +  +    P++  +T  GR+++  T   V+        +  +  VIYGDTDS+M+ 
Sbjct: 688  FTGATVGKLPCLPISSSVTAYGRQMIEKTKQEVEAEFCIANGHQYDARVIYGDTDSVMVK 747

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
             G +D+A+  A+  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y
Sbjct: 748  FGQNDLAQVMALGSEAAEFVSAKFIKPIKLEFEKVYYPYLLISKKRYAG--LYWTKAEKY 805

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
            + ++ KG++ VRRD   L   V +  L ++L +R     V++    + ++  D+   +V 
Sbjct: 806  DKMDSKGIETVRRDNCRLVSTVIETSLHKLLIDRD----VKAAEIYVKQMIADLLQNKVD 861

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + + VITK L+K       A  Q HV++A R+KQ    +  + GD V Y+I   +G    
Sbjct: 862  MSQLVITKALSKTDY----AGKQAHVELAERMKQRDAGSAPALGDRVAYVII--KGIK-- 913

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               G A   +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 914  ---GAAAYEKSEDPLYVLENSIPIDTKYYLENQLSKPLMRIFEPILG 957


>gi|7682378|gb|AAF67244.1| DNA polymerase [Leishmania enriettii]
          Length = 309

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 184/338 (54%), Gaps = 58/338 (17%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T     A+ G  +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 6   SSWSTIGRLDLKRLPRFQGTAT----NANQGKETCI-GRLVADSYSLSREHYKTVNYRLL 60

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   L    M      + +++      A LS  ++ HL V+
Sbjct: 61  SLADQMQLQGITKGSNNFEPGISLLTPAMLSVSRDIYDVLLQVSNCAVLSTAVISHLDVI 120

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  +V++ K        
Sbjct: 121 RLTKRLTTIAGNLWSRTLLGARSERIEYLLLHTFHDLKFITPDR--HVQDFKRG------ 172

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
               R+ EE   ED              GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 173 ----RDDEE---ED--------------GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 211

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG-------VLPELLKNLVQ 960
           YPS+IQE+NICFTTV+R          P+ L+    ++ +         VLP+++K+LV 
Sbjct: 212 YPSLIQEFNICFTTVDRGNQSEIDVPPPENLICASCAAASLSAPCLHKCVLPKVIKSLVD 271

Query: 961 RRRMVKTWMKTASGLK-IQQLDIQQQALKLTANSMYGC 997
            RR VK  MK    +  +  L+I+Q+ALKLTANSMYGC
Sbjct: 272 SRREVKRLMKAEKDVNSLALLEIRQKALKLTANSMYGC 309


>gi|345483424|ref|XP_001602680.2| PREDICTED: DNA polymerase delta catalytic subunit-like [Nasonia
            vitripennis]
          Length = 1090

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 184/683 (26%), Positives = 307/683 (44%), Gaps = 98/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL   + E  +L +    + +LD D+  G+NI+ FD   L++RAQ   V    +S 
Sbjct: 350  VGCQVLS-HNKESTMLEKWADFIRQLDPDIFTGYNINNFDFPYLINRAQHLNVRD--FSY 406

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            +GR+K     K     T+  S   G          GR+  D  L      +  SY+L  +
Sbjct: 407  LGRIKNI---KSVIKNTVLQSKQMGRRENKSVNFEGRVPFDLLLVLVRDYKLRSYTLNAV 463

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q  +S     L  Y   DA+L + L+  L  + +  ++ 
Sbjct: 464  SYHFLQEQKEDVH-HSIITDLQNGDSQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMA 522

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL     + Y++P                        V
Sbjct: 523  RVTGVSLSSLLTRGQQIKVVSQLLRKTIERGYLIP------------------------V 558

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
             +    D  F+                  G  V+EPK+G Y+  I  LDF+SLYPSII  
Sbjct: 559  HQGQGSDEQFE------------------GATVIEPKRGYYNDPIATLDFSSLYPSIIMA 600

Query: 924  YNICFTTV--------ERSPDGLVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTW 968
            +NIC+TT+           P+  V   P       S+   G+LPE+L++L+  R++ K  
Sbjct: 601  HNICYTTLLSPAAQKAYEVPENDVTKTPVNSNFVKSNVRKGILPEILESLLSARKVAKAE 660

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 661  LKKETDPLKQKVLDGRQYALKVSANSVYGFTGAQQGKLPCLEISGSVTAYGRTMIDKTKH 720

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+           + EVIYGDTDS+M+  G+  I  A  +  +  + V  K+ K ++++
Sbjct: 721  EVEQQYRKENGYEHDAEVIYGDTDSVMVKFGVKSIEDAMKLGKEAAEYVTSKFIKPIKLE 780

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L
Sbjct: 781  FEKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLL 838

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R+ ED ++       +V  D+   ++ + + VITK LTK          Q HV++A +
Sbjct: 839  IDRNPEDAIDYAK----QVISDLLCNRIDISQLVITKELTKTDY----TAKQAHVELAAK 890

Query: 1199 LKQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            +K+    T    GD +PY+ I   +GT +       Q+A  P  +   +    ID +YY 
Sbjct: 891  MKKRDAGTAPKLGDRIPYVFISGPKGTPA------YQKAEDP--IYVLENNIPIDTNYYL 942

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+   I G   E L
Sbjct: 943  ENQLSKPLVRIFEPILGDKAESL 965


>gi|10799869|emb|CAC12847.1| DNA polymerase [Pyrococcus sp. ST700]
          Length = 759

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 175/648 (27%), Positives = 298/648 (45%), Gaps = 96/648 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER ++ RL+  + + D D+++ +N   FD   LL RA+   +   +    GR   +  
Sbjct: 185  ANEREMIKRLVRIIREKDPDIIITYNGDNFDFPYLLKRAEKLGIKLPL----GR--DNSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKMQR------LGESLAVE--IKGRIHFDLFPVIRRTINLPTYTLRTVYEAIFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
             PH++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G       + +
Sbjct: 291  YPHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GKEFFPMEAQLARLVGQPVWDVSRSS 348

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                  +++  E+   E        
Sbjct: 349  TGNLVEWFLLRKAYERNELAPNK-----------------PDEKEYEKRLRE-------- 383

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG 937
                        +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R   G
Sbjct: 384  ------------SYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNREGCG 430

Query: 938  LVPHLPS------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
                 P           G +P LL +L++ R+ +K  MK +   ++ + LD +Q+A+K+ 
Sbjct: 431  KYDEAPEVGHRFCKDFPGFIPSLLGDLLEERQKIKKRMKESKDPIEKKLLDYRQRAIKIL 490

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSIMI 1047
            ANS YG  G++ +R+Y K  AE +T  GR+     ++LV+  L     +V+Y DTD +  
Sbjct: 491  ANSFYGYYGYAKARWYCKECAESVTAWGRQ----YIELVRRELEERGFKVLYIDTDGLYA 546

Query: 1048 H-SGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
               G  +  + K  A + +  +N K    LE++ +G Y R   + KKKYA +  + K   
Sbjct: 547  TIPGEKNWEEIKRKALEFVNYINSKLPGILELEYEGFYTRGFFVTKKKYALIDEEGK--- 603

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                I  +GL++VRRDWS ++KE     L  IL   + E+ V+ +     +V E + + +
Sbjct: 604  ----IITRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVK----EVTEKLSNYE 655

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            + +EK VI + +T+P   Y      PHV VA RL   G       G  + Y++    G  
Sbjct: 656  IPVEKLVIYEQITRPLNEYKAI--GPHVAVAKRLAAKG--IKIKPGMVIGYVLLRGDGPI 711

Query: 1226 SGSSVGIAQRARHPDELKKGDG-KWMIDIDYYASQQIHPVVSRLCASI 1272
            S  ++ I +           DG K   D +YY   Q+ P V R+  + 
Sbjct: 712  SKRAIAIEE----------FDGKKHKYDAEYYIENQVLPAVERILKAF 749


>gi|324120748|dbj|BAJ78765.1| DNA polymerase delta catalytic subunit [Vespa analis insularis]
          Length = 1105

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 180/677 (26%), Positives = 312/677 (46%), Gaps = 103/677 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            + E+ LL +    + +LD D+  G+NI+ FD   L++RA+   V    +  +GR+K   +
Sbjct: 373  NKEQELLQKWAEFIRQLDPDIFTGYNINNFDFPYLINRAKFLNVKD--FEYLGRIKN--I 428

Query: 698  PKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
              + K + +     G     +    GR+  D  L    L+R+    SYSL  ++   L +
Sbjct: 429  KSVIKNQILQSKQMGRREYKIINFEGRVPFDLLLV---LIRDYKLRSYSLNAVSYHFLQE 485

Query: 753  DRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  ++G   
Sbjct: 486  QKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMARVTGVSL 544

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
               L   +  +V   LL   R K Y++P                        V      D
Sbjct: 545  MCLLTRGQQIKVVSQLLRKMREKNYLMP------------------------VHTGRGSD 580

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
              F+                  GG V+EPK+G Y   I  LDF+SLYPSII  +N+C+TT
Sbjct: 581  EQFE------------------GGTVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTT 622

Query: 931  ----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG 974
                            V R+P   +  + S+   G+LPE+L+NL+  R++ K  +K  + 
Sbjct: 623  LLTSEKQNKYGLKIDEVTRTPSNSL-FVKSTVKKGLLPEILENLLTARKVAKAELKKETD 681

Query: 975  -LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
             LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ + 
Sbjct: 682  PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIEKTKHEVEQHY 741

Query: 1034 NLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYK 1084
             +         VIYGDTDS+M++ G+  I +A  +  +  + V  K+   ++++ + +Y 
Sbjct: 742  CINNGYKNDAVVIYGDTDSVMVNFGVKKIEEAMELGKEAAEYVTSKFINPIKLEFEKVYF 801

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
              LL+ KK+YA   + F     Y+ ++ KGL+ VRRD   L  ++ + CL ++L +R+ E
Sbjct: 802  PYLLINKKRYAG--LYFTKPDKYDKMDCKGLETVRRDNCPLVAKMMNTCLEKLLIDRNPE 859

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
            D ++       ++  D+   ++ + + +ITK LTK       A  Q HV++A ++K+   
Sbjct: 860  DAIDYAK----QIISDLLCNRIDISQLIITKELTKTDY----AAKQAHVELAAKMKKRDA 911

Query: 1205 STGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
             T    GD VPY+ I   +GT +       Q+A  P  +   +    ID  YY   Q+  
Sbjct: 912  GTAPKLGDRVPYVFISASKGTPA------YQKAEDP--IFVLENSIPIDTTYYLENQLSK 963

Query: 1264 VVSRLCASIEGTSPERL 1280
             + R+   I G   + L
Sbjct: 964  PLVRIFEPILGEKAQSL 980


>gi|430812887|emb|CCJ29720.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1088

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 175/650 (26%), Positives = 297/650 (45%), Gaps = 90/650 (13%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            K D DV++G+NI+ FD+  L+ RA+  ++ +  +   GR+ R +        +    G  
Sbjct: 373  KADPDVIIGYNIANFDIPYLIDRAKHLKINN--FPYFGRIIRQKCEVSNASFSSKAYGTR 430

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLE 770
                + I+GRL  D     +   R  SY+L  ++   LN+ +++V  H ++   Q  T E
Sbjct: 431  ESKSTDISGRLQLDMLQIMQRDYRLRSYTLNAVSAQFLNEQKEDVH-HSIITDLQNGTSE 489

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
            S   L  Y   DA L   LM  L  L    +++ ++G  +   L   +  ++   L    
Sbjct: 490  SRRRLAVYCLKDAHLPQRLMDKLMSLVNYIEMSRVTGVPFSYLLSRGQQIKIISQLSRKA 549

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
            R + +I+P                                 N  +D S            
Sbjct: 550  REEGFIIP---------------------------------NIRSDGSDEQ--------- 567

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-----------ERSPDGLV 939
            Y G  V+EPKKG Y+  I+ LDF+SLYPSI+Q +N+C+TT+           E+  D  V
Sbjct: 568  YEGATVIEPKKGYYNVPIVTLDFSSLYPSIMQAHNLCYTTLLNYKQIETLGFEKDKDYCV 627

Query: 940  P-----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANS 993
                   + S    G+LP++ +NL+  R+ VK  +K  +   K   LD +Q ALK++ANS
Sbjct: 628  TPENYCFVKSHIRKGLLPQIFENLLAARQKVKIDLKNETDPFKKAVLDGRQLALKISANS 687

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSI 1045
            +YG  G +N +    P++  +T  GR+++    + ++    +E        VIYGDTDS+
Sbjct: 688  VYGFTGATNGKLPCLPISSSVTSYGRQMIERAKEEIELKYTIENGYSHKAYVIYGDTDSV 747

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEV-NKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
            MI+ G+ DI+++  +  +    V NK  K ++++ + +Y   LL+ KK+YA +   +   
Sbjct: 748  MINFGVKDISESMKLGYEAADYVTNKLIKPIKLEFEKVYFPYLLISKKRYAGLF--WTKP 805

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
              ++ I+ KG++ +RRD   L   V +  L ++L ++     V+   N + +V  D+   
Sbjct: 806  ETFDKIDSKGIETIRRDNCRLVSTVIETILRKLLIDQD----VDGAQNYVKRVISDLLQN 861

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            ++ +   VITKTLTK          Q HV++A R+++       + GD V YII      
Sbjct: 862  KIDMSNLVITKTLTKSDY----ISKQAHVELAERIRKRDSGLAPTLGDRVAYIIV----- 912

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 913  --KGAKGDQTFLRSEDPIYVLENNIPIDTKYYLDNQLSKPLLRIFEPILG 960


>gi|296816038|ref|XP_002848356.1| DNA polymerase delta catalytic subunit [Arthroderma otae CBS 113480]
 gi|238841381|gb|EEQ31043.1| DNA polymerase delta catalytic subunit [Arthroderma otae CBS 113480]
          Length = 1113

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 207/817 (25%), Positives = 359/817 (43%), Gaps = 132/817 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  SK+   P  QR S C+ E +V   +D+    +    A++ P+ 
Sbjct: 257  FMIDTGISGMSWVEVPASKYEILPPHQRHSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 314

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 315  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 357

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E+ L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 358  VFVMD------TCSSIVNTQVLEFDKEEKMLIAWRDFVE--KVDPDVIIGYNIANFDFPY 409

Query: 672  LLHRAQ---VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
            LL RA+     + P   WS   RLK  +   ++   +    G      +   GR+  D  
Sbjct: 410  LLDRAEHLGCTKFP--YWS---RLKGVQSHAIKASFSSKQMGKRDSKATNTNGRIQLDLL 464

Query: 729  -LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWL 785
             L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+L
Sbjct: 465  QLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAYL 522

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTY 843
               LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD    
Sbjct: 523  PQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD---- 576

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                                           ND + N          Y G  V+EP +  
Sbjct: 577  -----------------------------LKNDENSNQQ--------YEGATVIEPVRDY 599

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSKT 947
            Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V         +   
Sbjct: 600  YPVPIATLDFASLYPSIIQAHNLCYTTLLNKRTVEKLGLKKGEDYIVTPNDDMFCTAKVR 659

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N +  
Sbjct: 660  KGLLSQILEELLSARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAK 1058
              P+A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G  D+A+A 
Sbjct: 720  CLPIASSTTSYGRQMIEKTKDEVEARYTISNGYTHDAKVIYGDTDSVMVKFGTKDLAEAM 779

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ 
Sbjct: 780  KLGEEAAGYVSSKFMKPIKLEFEKVYYPYLLINKKRYAGLYWTNPD--KYDKMDTKGIET 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD  LL + V +  L++IL +R+       + N++     D+   +V + K VITK L
Sbjct: 838  VRRDNCLLVQTVIETVLNKILIDRNVSGAETYVKNTI----SDLLQNKVDMSKLVITKAL 893

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            TK  + Y  +  Q HV++  R+++    +  + GD V Y+I        G + G     +
Sbjct: 894  TK--DKY--SGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV-------GGAAGDKNYEK 942

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 943  SEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 979


>gi|84043446|ref|XP_951513.1| DNA polymerase delta catalytic subunit [Trypanosoma brucei TREU927]
 gi|33348312|gb|AAQ15638.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
 gi|62359086|gb|AAX79533.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma brucei]
 gi|261326367|emb|CBH09326.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1026

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 177/668 (26%), Positives = 307/668 (45%), Gaps = 89/668 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AG+NV C   +E  +L +    + ++D D L G+NI  FD   LL R    +V  S +  
Sbjct: 286  AGANV-CSFETEEEMLVQWARFVKRIDPDFLTGYNICNFDFPYLLSRGITLKVNDSFFYW 344

Query: 689  IGRLKRSEMPKLRK--GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
              +L    + + +K   R +   G        + GR++ D     +   +  +YSL  ++
Sbjct: 345  GRQLNERTVHREKKFLSRQL---GNREYTELTMEGRVVMDVMAVIQRDYKLRAYSLNAVS 401

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            +  L + +++V  H ++   Q    E+   L  Y   DA+L ++L+  L V+    ++  
Sbjct: 402  QHFLGEQKEDVH-HSIISDLQQGNDETRRRLAVYCLKDAYLPVKLLERLMVVVNNVEMAR 460

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G   G  L+  +  +V  +LL   RA+ ++VP       ET  A+QR           
Sbjct: 461  VTGVPIGWLLERGQQIKVFSMLLRKARARNFVVP-----TVETTGAEQRR---------- 505

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EPKKG Y + I+ LDF SLYPSII  +
Sbjct: 506  --------------------------YEGATVIEPKKGHYIEPIVTLDFASLYPSIIIAH 539

Query: 925  NICFTT------VERSPDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVKTWMKT 971
            N+C++T      V     G+    P+           GVLPE+L++L+  RR  +  MK 
Sbjct: 540  NLCYSTLLPGHEVNNYESGMKEDTPTEHKFIRKEVFPGVLPEVLRDLLAARRQARALMKD 599

Query: 972  AS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
             S   L+ + L+ +Q ALK++ANS+YG  G    R     L+  +T  GR ++  T   V
Sbjct: 600  VSQDSLEYKVLNGRQLALKVSANSVYGFTGAQVGRLPCLELSATVTSYGRRMIEETKQFV 659

Query: 1030 QNN-LNLEVIYGDTDSIMI-------HSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +   +  EVIYGDTDS+MI        S  + + +A     +  + V+  +   + ++ +
Sbjct: 660  EKKYVGAEVIYGDTDSVMIRCVINADESDTNKLQQAMDFGKEAAEAVSSTFPDPIRLEFE 719

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA   + + + + Y+ ++ KG++ VRRD   L   V    L+++L +
Sbjct: 720  KVYYPFLLMNKKRYAG--LLWTNTVRYDKLDAKGIETVRRDSCPLVASVISGVLNRMLIQ 777

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            RS E  VE +  ++     D+   ++ + + VITK+ +K    Y  A  Q H+ +  R++
Sbjct: 778  RSVESAVEFVKGTI----RDLLHNRLDISQLVITKSFSKSESEYAGA--QAHIALVERMR 831

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +   ++  + GD V Y+I         ++ G     R  D +   +    ID  +Y   Q
Sbjct: 832  RRDPASAPNVGDRVAYVIV-------RAAKGAKAYERSEDPIYVLENNIPIDTQHYLEHQ 884

Query: 1261 IHPVVSRL 1268
            + P + R+
Sbjct: 885  LGPPLLRV 892


>gi|327276010|ref|XP_003222764.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Anolis
            carolinensis]
          Length = 1100

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 255/1014 (25%), Positives = 428/1014 (42%), Gaps = 204/1014 (20%)

Query: 335  LPFYILDAHEQLSGANMG---TLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQT 391
            L +Y+        G+  G    L +FG  +AG   +S C  +       Y +P    F+ 
Sbjct: 88   LDYYVGTHIPGFPGSTQGPVPVLRMFGVTEAG---NSLCCHIHGFAPYFY-VPAQTGFKA 143

Query: 392  DEIMKLEKDAEESRISPMAFRK-KLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
            D + + +++   + +  M   K  L  V L +  EI N+    N+  Y            
Sbjct: 144  DHLAEFQRELNAAVLRDMRSNKDNLSQVVLAV--EICNKQ---NMYGY------------ 186

Query: 451  QAEIPAGENYV--LKINYPFKDPPLPAD--LKGENFCSLLGTHS-SALEL-------FLV 498
                  GEN++  LKI         PA   L+    C  LG H+  A E        F+V
Sbjct: 187  -----HGENFIPFLKITMAMPRLIAPAKRLLEQGLRCGTLGVHNYQAFEANIDFEIRFMV 241

Query: 499  KRKVKGPSWLSI--SKF----------SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHV 546
             R V G +W+ +   K+          SS   P +VS C+ E  V +  D          
Sbjct: 242  DRDVVGCNWIELPAGKYRLRQEQSAGESSKENPPKVSLCQLEADV-AWMDFISYPPEGEW 300

Query: 547  AEVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLS 601
              + P+ V + ++     K +F + +    I  A++V     K            P + +
Sbjct: 301  QRIAPLRVLSFDIECAGRKGIFPEPEKDPVIQIANMVQRQGEK-----------DPFVRN 349

Query: 602  HFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVG 661
             FT+         P+             GS VLC +  E  LL      +  +D D++ G
Sbjct: 350  VFTL-----QSCAPI------------VGSQVLCFQK-EGELLKAWAEFIRTVDPDIITG 391

Query: 662  HNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK-----------RSEMPKLRKGRTIFGSG 710
            +NI  FDL  L++RAQ  +V  S +  +GR+            +S+    R+ + I   G
Sbjct: 392  YNIQNFDLPYLINRAQTLKV--STFPFLGRIPARKSVIRDSSFQSKQMGRRENKVINTEG 449

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
             +               F   + LLR+    SY+L  ++   L + +++V  H ++   Q
Sbjct: 450  RA--------------QFDLLQVLLRDYKLRSYTLNAVSYHFLQEQKEDVQ-HSIITDLQ 494

Query: 768  --TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
              T +S   L  Y   DA+L + L+  L  +    ++  ++G      L  AR Q++   
Sbjct: 495  NGTEQSRRRLAVYCLKDAYLPLRLLEKLMCVINYMEMARVTGVPLSYLL--ARGQQI--- 549

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
                                  K+  Q     V+   V  +                 K 
Sbjct: 550  ----------------------KVVSQLLRQAVKQNLVMPVV----------------KS 571

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---SPD 936
            + G  YAG  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT      VER   S D
Sbjct: 572  EGGEDYAGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLQQGAVERHGLSAD 631

Query: 937  GLV------PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKL 989
              +        + +S   G+LPE+L+NL+  R+  KT +K  +   K Q LD +Q ALK+
Sbjct: 632  KFIRTPTGDHFVKASVRKGLLPEILENLLAARKRAKTELKQETDPFKRQVLDGRQLALKV 691

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGD 1041
            +ANS+YG  G    +     +++ +T  GR+++  T  LV++   +        +V+YGD
Sbjct: 692  SANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTIANGYSADAKVVYGD 751

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M   G+  +A+A  I  +    V+  +   ++++ + +Y   LL+ KK+YA +   
Sbjct: 752  TDSVMCRLGVPSVAEAMEIGREAAAWVSSHFIPPIKLEFEKVYFPYLLINKKRYAGLYFS 811

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              +   ++ ++ KG++ VRRD   L   + + CL ++L +R     V        +V  D
Sbjct: 812  -SNPDTHDKMDCKGIETVRRDNCPLVANLINTCLQKLLIDRDPAGAVAHAK----EVISD 866

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +   +V + + VITK LT+  + Y  A  Q HV++A R+++    +  + GD VPY+I  
Sbjct: 867  LLCNRVDISQLVITKELTRTADEY--AGRQAHVELAERMRRRDPGSAPNLGDRVPYVII- 923

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                  G++ G+A   +  D +   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  ------GAAKGVAAYMKSEDPIYVLENNLPIDTQYYLEQQLAKPLLRIFEPILG 971


>gi|330507958|ref|YP_004384386.1| DNA polymerase 2 [Methanosaeta concilii GP6]
 gi|328928766|gb|AEB68568.1| DNA polymerase 2 [Methanosaeta concilii GP6]
          Length = 891

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 179/687 (26%), Positives = 315/687 (45%), Gaps = 103/687 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  LLN+    +   + D++ G+N + FD   L  RA+       +  ++GR   S   
Sbjct: 235  NEYELLNQFAAIIRDYNPDIIAGYNSNDFDFPYLQERAK----QQQLDFRVGRDGSSWYI 290

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
            K    + +  S  S      I GR++ D     R       Y+L  +A   L+ ++ +V 
Sbjct: 291  K----KIVNRSDVS------ITGRVVVDLLPIIRSSFSLKQYTLRNVAAELLSMEKYDVN 340

Query: 759  PHDVLKMF---QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            P ++ +++      E L   I Y   D+ L++ L+  L ++     L+  SG+L    + 
Sbjct: 341  PQEIEELWAEESNGEGLKRFISYSRRDSVLALRLLLDLRLMDKYIALSRASGSLLQDIVN 400

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G ++  VE LLL  FR    +VP K              + G+ D    E  NE+     
Sbjct: 401  GGQSGMVENLLLRRFREISRVVPPK-------------PDSGLSDERYVE--NEELK--- 442

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--- 932
                             GG VL P+KGL +  +++LD+ SLYP+I+  +N+C++TV    
Sbjct: 443  -----------------GGAVLVPEKGLVED-VVILDYKSLYPTIMMAHNLCYSTVVLAD 484

Query: 933  --------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQ 984
                     SP G    +  + ++GV+P++LK L+ +R   K  MK AS  + + LD +Q
Sbjct: 485  SPEKKDIITSPSG-GSFVSPNVSSGVMPQVLKELLDQRTETKRLMKKASEEERRFLDAKQ 543

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN------------- 1031
             ALK+  NS YG  G++ +R Y+  LA  +T  GRE +  T  ++ +             
Sbjct: 544  YALKILLNSFYGYSGYARARLYSLALANAVTSFGRENIIRTKKIIDDIGSVYVIEGRAVF 603

Query: 1032 ------------NLNLEVIYGDTDSIMI----HSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
                          +L V+YGDTDS+ +    H+    +  A  I  K+ + V     + 
Sbjct: 604  KDELKLGAPTGKGFDLNVVYGDTDSVFVRLSPHNEPVSLEDAGLIGKKIAETVTSSLPQP 663

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            +E+  +   +R + L KK+YA    +       + I+ +G++ VRRDW  L+      CL
Sbjct: 664  MELVFEAFARRGIFLAKKRYALWIFEQMGEEWKDRIKVRGMETVRRDWCGLTSGTLKTCL 723

Query: 1135 SQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
              +L E   ++ VE + + ++++Q  D+      LE+  +T+  TK   +Y +   QPH+
Sbjct: 724  ELVLKEGKVDEAVEHVRSVVVRLQNLDLSQDPGILEELTLTRRYTKSTGSYKN--KQPHI 781

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            Q+  ++++ G     + GD VP++I   +G     ++    RA  P+ + + +    +D 
Sbjct: 782  QLVEKMRERGGKV-PTVGDRVPFVIIRGKGGKKNKTL-FVDRAEDPEFVLENN--ISLDT 837

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
            +YY ++QI P V R+  S  G + +RL
Sbjct: 838  EYYVNKQILPPVMRIFESF-GVNKDRL 863


>gi|336380987|gb|EGO22139.1| hypothetical protein SERLADRAFT_451027 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1062

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 246/976 (25%), Positives = 423/976 (43%), Gaps = 184/976 (18%)

Query: 347  SGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVY-AIPNGPLFQTDEIMKLEKDAEESR 405
            +GA M  L +FG  +AG   HS    V +     Y A+P G  FQ D       D E+  
Sbjct: 91   TGAVM--LRMFGVTEAG---HSVLAYVTDFLPYFYIAVPRG--FQND-------DKED-- 134

Query: 406  ISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKIN 465
                 FR  + + +LG      + ++N       +  V+RR  +G      G+++V  + 
Sbjct: 135  -----FRNHI-NTSLG-----GSFVVN-------IESVQRRNLWGYR----GDDWVAFLK 172

Query: 466  YPFKDPPLPADLKGENFCSLLGTHSSALE-------LFLVKRKVKGPSWLSI--SKFSSC 516
                DP     ++   F   +G   S  E        F++  KV G +W+ I   K+   
Sbjct: 173  LTICDPKTLPKVRDNLFP--IGQAVSTFESNIPYALRFMIDTKVVGMNWIEIPAGKYKIM 230

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDVNE 571
            P  ++ S C+ E+ V     I  +   K  ++V P+ + + ++     K +F + Q ++ 
Sbjct: 231  PDKEKHSQCQVELRVRYDHFISHAPEGKW-SKVAPLRILSFDIECAGRKGIFPEPQ-MDP 288

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
            ++  + +   +             +P + + FT+                    +   GS
Sbjct: 289  VIQIANMVTRQGD----------SQPFIRNIFTL-----------------NSCSHIVGS 321

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
             VL  +  E A+L      + + D DV++G+NIS FD   LL RA+   + ++ +  +GR
Sbjct: 322  QVLSFKD-EGAMLQAWRDFIEEADPDVVIGYNISNFDFPYLLDRAK--HLKAAKFPYLGR 378

Query: 692  LKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT--FLCSRDLLREVSYSLTQLA 746
            +K S   K +   T F S   G      + + GRL  D   F+     LR  SY+L  + 
Sbjct: 379  IKNS---KTQVKDTHFSSKAYGQRDSKETVLDGRLQLDILQFMQREHKLR--SYTLNSVC 433

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q  T ES   L  Y   DA+L   L+  L       +++ 
Sbjct: 434  AQFLGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLLDKLMCFVNYIEMSR 492

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   ++ +V   L      + Y+VP                  G +++   
Sbjct: 493  VTGVPFNFLLSRGQSIKVLSQLFRKANEEGYVVPALL------------KGEGTDEQ--- 537

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EPKKG YD  I  LDF+SLYPSI+  +
Sbjct: 538  --------------------------YEGATVIEPKKGYYDSPIATLDFSSLYPSIMMAH 571

Query: 925  NICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT+  + + D L           P+      +S+  G+LP +L++L+  R+  K  
Sbjct: 572  NLCYTTLLDKTTIDRLQLVKDVDYIQTPNNDFFATTSRRKGLLPTVLEDLISARKRAKAD 631

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T  
Sbjct: 632  LKKETDPFKCAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEKTKQ 691

Query: 1028 LVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+        ++ N EVIYGDTDS+M+  G  ++ K  A+  +    V  ++ K ++++
Sbjct: 692  EVEAEYCVANGHDHNAEVIYGDTDSVMVKFGPAELTKVMALGSEAADLVTARFVKPIKLE 751

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V + CL ++L
Sbjct: 752  FEKVYFPYLLISKKRYAG--LYWTKPEKYDKMDSKGIETVRRDNCRLVSTVIETCLHKML 809

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R     V+   +   +V  D+   +V + + VITK L+K       +  Q HV++A R
Sbjct: 810  IDRD----VKGAEDYTKRVISDLLQNKVDMSQLVITKALSKAEY----SGKQAHVELAGR 861

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ    +  + GD V Y+I   +G       G A   +  D L   +    ID  YY  
Sbjct: 862  MKQRDAGSAPALGDRVAYVIV--KGMK-----GAAAYEKSEDPLYVLENNIPIDTKYYLD 914

Query: 1259 QQIHPVVSRLCASIEG 1274
             Q+   + R+   I G
Sbjct: 915  NQLSKPLMRIFEPILG 930


>gi|426196824|gb|EKV46752.1| hypothetical protein AGABI2DRAFT_186127 [Agaricus bisporus var.
            bisporus H97]
          Length = 1071

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 183/677 (27%), Positives = 311/677 (45%), Gaps = 98/677 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL   + E +L       + ++D DV+ G+NI+ FD   L+ RA+   V +  ++ +
Sbjct: 329  GSQVLTF-TEEASLFQAWRDFVEEVDPDVITGYNIANFDFPYLMDRAKALEVAN--FNYL 385

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT--FLCSRDLLREVSYSLTQL 745
            GRL+  R+E+         +G   S    + + GRL  D   F+     LR  SY+L  +
Sbjct: 386  GRLRNVRTEVKNTHFSSRAYGQRDSKE--TPLYGRLQMDILQFMQREHKLR--SYTLNSV 441

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
                L + +++V    + +++  T ES   L  Y   DA+L   L+  L       ++  
Sbjct: 442  CAQFLGEQKEDVHHSVITELYNGTPESRRRLAVYCLKDAYLPQRLLDKLMCFVNYTEMAR 501

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   ++ +V   L      + Y++P                          
Sbjct: 502  VTGVPFNYLLSRGQSIKVLSQLFRKANEEGYVIP-------------------------- 535

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
             L  E               G  G AY G  V+EPKKG YD  I  LDF+SLYPSI+  +
Sbjct: 536  ALKGE---------------GTDGEAYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAH 580

Query: 925  NICFTT------VER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            N+C+TT      +E+           +P+     + S K  G+LP +L++L+  R+  K 
Sbjct: 581  NLCYTTLIDGNMIEKLDLVKDVDYIQTPNNDF-FVTSMKRKGLLPTILEDLISARKRAKA 639

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K      K   LD +Q ALK++ANS+YG  G +  +    P++  +T  GR+++  T 
Sbjct: 640  DLKMEKDPFKKAVLDGRQLALKISANSVYGFTGATVGKLPCLPISSSVTAYGRQMIEKTK 699

Query: 1027 DLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+        +  +  VIYGDTDS+M+  G +D+A+  A+  +  + V+ K+ K +++
Sbjct: 700  QEVEAEFCIANGHQYDARVIYGDTDSVMVKFGQNDLAQVMALGSEAAEFVSAKFIKPIKL 759

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V +  L ++
Sbjct: 760  EFEKVYYPYLLISKKRYAG--LYWTKAEKYDKMDSKGIETVRRDNCRLVSTVIETSLHKL 817

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R     V++    + ++  D+   +V + + VITK L+K       A  Q HV++A 
Sbjct: 818  LIDRD----VKAAEIYVKQMIADLLQNKVDMSQLVITKALSKTDY----AGKQAHVELAE 869

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+KQ    +  + GD V Y+I   +G       G A   +  D L   +    ID  YY 
Sbjct: 870  RMKQRDAGSAPALGDRVAYVII--KGIK-----GAAAYEKSEDPLYVLENSIPIDTKYYL 922

Query: 1258 SQQIHPVVSRLCASIEG 1274
              Q+   + R+   I G
Sbjct: 923  ENQLSKPLMRIFEPILG 939


>gi|219121567|ref|XP_002181135.1| DNA polymerase delta [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407121|gb|EEC47058.1| DNA polymerase delta [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1087

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 203/821 (24%), Positives = 364/821 (44%), Gaps = 124/821 (15%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V RK+ G  WL++    +     P++ + C+ E+ + S  DI    S     ++ P+ 
Sbjct: 217  FMVDRKLSGAGWLTLPSDTYQIREIPRKETHCQIEVDI-SYDDITPRPSEGEWNKIAPLR 275

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            + +++++    ++    E     V+     +I   +      KP + + FT+      G 
Sbjct: 276  ILSVDIECQ-GRKGHFPEAEKDPVI-----QIANTISLYGQDKPIVQNVFTL-----KGC 324

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVL 672
             P+             G+ V+C +  E  L+  R  +E    D D++ G+N+  FD+  L
Sbjct: 325  LPI------------VGAQVICSDEEEDMLMKWRAFLE--AADPDIITGYNVQNFDIPYL 370

Query: 673  LHRAQVCRVPSS----MWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLC 725
            L RA      SS    + S   +  R    K +   T+F S   G    + + I GR++ 
Sbjct: 371  LDRADSLSKGSSHRKAVLSGFAQWGRVRNTKAKMRDTMFQSSAYGKRANVETTIDGRVIF 430

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDA 783
            D     +   +  SYSL  +    L + +++V  H ++   Q  + E    L  Y   DA
Sbjct: 431  DMLPYMQRNHKLSSYSLNSVCAEYLGQQKEDVH-HSIISDLQNGSDEDRHRLAVYCLKDA 489

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
             L   LM  LSVL    ++  ++G      +   +  +V  ++L   R +K +VP     
Sbjct: 490  LLPQRLMDKLSVLVNYIEMARVTGVPMSFLISRGQQIKVFSMILRKCRHEKLLVP----- 544

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                               + +  N +A+                  Y G  VL+P K  
Sbjct: 545  ------------------TLRKSGNANADV----------------GYEGATVLDPIKNY 570

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTG 949
            Y+  I  LDF SLYPSI+Q YN+C++T+               +S +G V  + SS   G
Sbjct: 571  YEVPIATLDFASLYPSIMQAYNLCYSTLVNPADVGKLDPDIYRKSENGNV-FVHSSVKKG 629

Query: 950  VLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +L+ L+  R+  K  MK A +       + +Q ALK++ANS+YG  G +  +    
Sbjct: 630  ILPTILEELLSARKRAKKDMKNAPTDFDRAVQNGRQLALKVSANSVYGFTGATVGQLPCL 689

Query: 1009 PLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
            P+A  +T  GR++L  T   V+           + +V+YGDTDS+M+  G   +A+   +
Sbjct: 690  PIASSVTSYGRQLLEKTKTFVEEKYTKSNGYDHDAQVVYGDTDSVMVKFGPATVAETFPL 749

Query: 1061 AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
            A +  ++ ++ +   + ++ + +Y   LL+ KK+YA   + + +   Y+ ++ KGL++VR
Sbjct: 750  AIEAAEKASEIFPSPILLEFEKVYFPYLLMNKKRYAG--LMWTEIEKYDKLDTKGLEVVR 807

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L +EV    L++IL +++ +  +E + + +     D+   ++ + + VITK+L K
Sbjct: 808  RDNCQLVREVIQTSLNKILIDQNVQGAIEYVKSQI----SDLLQNKMDISRLVITKSLNK 863

Query: 1180 PPEAY-------PDAK-NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
              E          D K  Q HV++A R+K+    +    GD VPYII          + G
Sbjct: 864  GAEYALGLGGKKDDYKVKQAHVELAARMKKRDAGSAPQLGDRVPYIIIT-------GAKG 916

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             A   +  D +   +    ID  +Y + Q+   ++R+   I
Sbjct: 917  AANFEKAEDPIYVLENNLPIDCKWYLTNQLSKPLTRIFEPI 957


>gi|186532719|ref|NP_201201.2| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
 gi|322510022|sp|Q9LVN7.2|DPOD1_ARATH RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=Protein EMBRYO DEFECTIVE 2780
 gi|76262800|gb|ABA41487.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
            thaliana]
 gi|332010438|gb|AED97821.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
          Length = 1095

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 202/782 (25%), Positives = 339/782 (43%), Gaps = 127/782 (16%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
             G +V+  E+    LL  R +I    +D D+++G+NI  FDL  L+ RA    +    + 
Sbjct: 360  VGVDVMSFETEREVLLAWRDLIR--DVDPDIIIGYNICKFDLPYLIERAATLGIEE--FP 415

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             +GR+K S   ++R   + F S   G      + I GR   D         +  SYSL  
Sbjct: 416  LLGRVKNS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNS 472

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L++ +++V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++
Sbjct: 473  VSAHFLSEQKEDVH-HSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 531

Query: 803  TNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
              ++G      L  AR Q ++ L  LL   + K  ++P+          AKQ        
Sbjct: 532  ARVTGVPISFLL--ARGQSIKVLSQLLRKGKQKNLVLPN----------AKQ-------- 571

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                    G     Y G  VLE + G Y+K I  LDF SLYPSI
Sbjct: 572  -----------------------SGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSI 608

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMV 965
            +  YN+C+ T+    D    +LP    T               G+LPE+L+ L+  R+  
Sbjct: 609  MMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRA 668

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K A   L+   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  
Sbjct: 669  KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQ 728

Query: 1025 TVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T  LV++          N EVIYGDTDS+M+  G+ D+  A  +  +  + ++  + K +
Sbjct: 729  TKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPI 788

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD  LL K +    L+
Sbjct: 789  KLEFEKVYFPYLLINKKRYAG--LLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLN 846

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            +IL +R      E++  ++     D+   ++ L   VITK LTK  + Y       H ++
Sbjct: 847  KILIDRDVPGAAENVKKTI----SDLLMNRIDLSLLVITKGLTKTGDDY--EVKSAHGEL 900

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+++   +T  + GD VPY+I         ++ G     R  D +        ID +Y
Sbjct: 901  AERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLQNNIPIDPNY 953

Query: 1256 YASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
            Y   QI   + R+   +   + + L     L  S  +S    T    PS+S +     ++
Sbjct: 954  YLENQISKPLLRIFEPVLKNASKEL-----LHGSHTRSISITT----PSNSGIMKFAKKQ 1004

Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSS--------ICMSVSEKPSKPETEYNFWRTLRCP 1367
                     LSC  C        +C+S         C +VS+     E     W   +C 
Sbjct: 1005 ---------LSCVGCKVPISNGTLCASCKGREAELYCKNVSQVAELEEVFGRLWT--QCQ 1053

Query: 1368 KC 1369
            +C
Sbjct: 1054 EC 1055


>gi|344299649|gb|EGW30002.1| DNA polymerase delta catalytic subunit [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1079

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 214/849 (25%), Positives = 370/849 (43%), Gaps = 139/849 (16%)

Query: 475  ADLKGENFCSLLGTHSSA--LELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEIT 530
             D++ EN  S   ++ +   L   ++  K+ G SW+++  SK+   P   ++S C+ E +
Sbjct: 205  GDIRFENLFSETVSYDNINYLMRLMIDCKITGMSWITLPKSKYKMVPDNLKISSCQIECS 264

Query: 531  VDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKI 585
            +D  +D+    S     ++ P+ + + ++     K +F + Q    I  A+VV       
Sbjct: 265  IDY-RDLITHPSEGEWLKMAPLRILSFDIECAGRKGIFPEAQHDPVIQIANVVS------ 317

Query: 586  DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN 645
                  S   KP + + FTV         P+             GS +      E  L++
Sbjct: 318  -----KSGESKPFVRNVFTV-----NTCSPI------------IGSQIFEHAKEEEMLMH 355

Query: 646  RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRT 705
                 + ++D DV++G+N S FD+  LL RA+   +    +   GRLKR    K      
Sbjct: 356  WRQF-ITEVDPDVIIGYNTSNFDIPYLLDRAKALGLKD--FPFFGRLKRI---KQEVKDA 409

Query: 706  IFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
            +F S   G     +  I GR+  D     +   +  SY+L  ++   L + +++V  H +
Sbjct: 410  VFSSRAYGTRENKVVNIDGRMQLDLLQFVQREYKLRSYTLNSVSAHFLGEQKEDV-QHSI 468

Query: 763  LKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
            +   Q  T E+   L  Y   DA+L + L+  L  L    ++  ++G  +   L   +  
Sbjct: 469  ITDLQNGTKETRRRLAVYCLKDAFLPLRLLDKLMCLVNYTEMARVTGVPFSYLLSRGQQI 528

Query: 821  RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
            +V   L      +  I+P+  +                      E TNE+          
Sbjct: 529  KVISQLFRKCLEEDIIIPNMKS----------------------EGTNEE---------- 556

Query: 881  DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--------- 931
                      Y G  V+EP +G YD  I  LDF+SLYPSI+  +N+C+TT+         
Sbjct: 557  ----------YEGATVIEPIRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLSKSAIQAY 606

Query: 932  -------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
                    R+P+G    + S K  G+LP +L  L+  R+  K  +K  +   K   L+ +
Sbjct: 607  GLTEEDYTRTPNGDF-FVKSHKRQGILPTILNELLTARKKAKADLKKETDPFKKDVLNGR 665

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ--------NNLNL 1035
            Q ALK++ANS+YG  G +  +     ++  +T  GRE++  T + VQ        +  + 
Sbjct: 666  QLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPFDA 725

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKY 1094
            +VIYGDTDS+M+  G  D+     +  +    V+ K+K  ++++ + +Y   LL+ KK+Y
Sbjct: 726  QVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSTKFKSPIKLEFEKVYYPYLLINKKRY 785

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A +     D   ++ ++ KG++ VRRD   L + V    L  IL ER  E     +  ++
Sbjct: 786  AGLYWTRPD--KFDKMDTKGIETVRRDNCRLVQNVITKVLQFILEERDVEKAQRFVKQTI 843

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
                 D+   +V L + VITK   K    +  +  Q HV++A R+K+    +  + GD V
Sbjct: 844  A----DLLQNRVDLSQLVITKAYAK----HDYSAKQAHVELAERMKKRDPGSAPTLGDRV 895

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI-- 1272
             Y+I      ++GS        +  D L   +    ID+ YY  QQ+   + R+   I  
Sbjct: 896  AYVI-----VNTGSD---KNYEKSEDPLYVLENSLPIDVKYYLDQQLTKPLERIFNPILG 947

Query: 1273 EGTSPERLA 1281
            +G + E LA
Sbjct: 948  DGKTKELLA 956


>gi|300122468|emb|CBK23038.2| unnamed protein product [Blastocystis hominis]
          Length = 850

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 185/686 (26%), Positives = 317/686 (46%), Gaps = 98/686 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  G +V C E  E+ +L      L   D+D++ G+NI  FD+D L  RA   +V    +
Sbjct: 114  SIPGVDVYCFED-EKDMLAAWSKYLVACDADIITGYNIQNFDIDYLRKRAATLKVKE--F 170

Query: 687  SKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
              +GR+K  E    R   + F S   G    I + IAGRL+ D     R   +  SY+L 
Sbjct: 171  DLLGRVK-GEFA--RCTTSTFSSAAYGTHENIDTNIAGRLIFDVMQFVRREYKLSSYTLN 227

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELI-EYGETDAWLSMELMFHLSVLPLTRQL 802
             ++   L + +++V  + + ++F   +   + I  Y   DAWL  +L+  L+V+    ++
Sbjct: 228  NVSSEFLGQTKEDVKYNQIKELFNGDDVTRQRIASYCVKDAWLPQQLLDKLNVIINQVEM 287

Query: 803  TNISGNLWGKTLQGARAQRVEYL-LLHAFRAK-KYIVPDKFTYVKETKMAKQRSNHGVED 860
              ++G      L  +R Q+++ L ++H    +  YI+P              RSN     
Sbjct: 288  ARVTGVPINMLL--SRGQQIKVLSMIHRKSLQLGYIIP-----------TLDRSN----- 329

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                      +   Y G  V+EPKKG Y++ I  LDF SLYPSI
Sbjct: 330  --------------------------QSEKYEGATVIEPKKGYYEEPIATLDFASLYPSI 363

Query: 921  IQEYNICFTT------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            +  +NIC++T            VERSP G    L  S+  GVLP +L+ L+  R++ K  
Sbjct: 364  MIAHNICYSTLIPDSMEIDESRVERSPTG-NRFLKKSEREGVLPIILRELLAARKVAKKD 422

Query: 969  M-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            M K    LK    + +Q ALK++ANS+YG  G +  +     ++  +T  GR ++  T  
Sbjct: 423  MAKETDPLKKAVQNGRQLALKVSANSVYGFTGATVGQLPCLAISRTVTSYGRAMIEMTQR 482

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V     ++        ++YGDTDS+M+  G+  + +A  +  +  + V+  +   + ++
Sbjct: 483  KVMERYCIKNGYEHDAMIVYGDTDSVMVKFGVKTVEEAMKLGKEAAEYVSGFFPDPVRLE 542

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +   +     ++ ++ KG++ VRRD   L + + D CL ++L
Sbjct: 543  FEKVYFPYLLMNKKRYAGLF--WTKPEKWDKLDAKGIETVRRDNCRLVRILVDTCLKKLL 600

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN----QPHVQ 1194
             +RS ED VE + ++L  + ++    Q+ +   VITK L K  +A  D K       HV+
Sbjct: 601  IDRSPEDAVEYVKSTLSALLQN----QIDISLLVITKALGK--KADDDGKGYKAKAAHVE 654

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+ Q    +    GD V Y+I            G     +  D +   +    ID++
Sbjct: 655  LAKRMAQRDPGSAPKVGDRVAYVII-------EKDKGAKAYTKSEDPIYVLENNLQIDVN 707

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERL 1280
            +Y   Q+   + R+ A ++  + + L
Sbjct: 708  WYLEHQLRGPIERIFAVLKNHTLDEL 733


>gi|298714506|emb|CBJ27528.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1097

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 182/647 (28%), Positives = 299/647 (46%), Gaps = 96/647 (14%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GA 711
            D D+L G+NI  FD+  LL+RA+     S    K G   R          T F S   G 
Sbjct: 390  DPDILTGYNIQNFDVPYLLNRAKALSRKSKKLEKFGEWGRLRGKMATMKDTTFQSSAYGK 449

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TL 769
               + + I GR++ D         +  SYSL  ++   L + +++V  + ++   Q  + 
Sbjct: 450  RENVETSIDGRVMFDMLPYMFRNHKLSSYSLNSVSAELLGQQKEDVH-YSIISDLQNGSD 508

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            E    L  Y   DA L M+LM  LSV+    ++  ++G      L   +  +V  +LL  
Sbjct: 509  EDRRRLAVYCIKDALLPMKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRK 568

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             R+   ++P+                H V               D +T            
Sbjct: 569  TRSVNLLIPN-------------LPKHAV---------------DQET------------ 588

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------------RSP 935
             Y G  V+EPKK  Y++ I  LDF SLYPSI+Q YN+C++T+                SP
Sbjct: 589  -YEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTLVAGEDKNKLKPDQYLTSP 647

Query: 936  DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM 994
             G V  + S  T G+LP +L  L+  R+  K  M  A+  ++    + +Q ALK++ANS+
Sbjct: 648  SGDV-FVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEKAVQNGRQLALKVSANSV 706

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIM 1046
            YG  G +  +    P+A   T  GR++L  T   V+    +        +V+YGDTDS+M
Sbjct: 707  YGFTGATVGQLPCLPIASSTTSYGRDLLFRTRSYVEETYTVANGYDHDADVVYGDTDSVM 766

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            +  G   +A+A  +A K  +EV+K + + ++++ + +Y   LL+ KK+YA +     D  
Sbjct: 767  VKFGSKTVAEAMPLAEKAAEEVSKIFPRPIKLEFEKVYWPYLLMNKKRYAGLLWTKVDK- 825

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
             Y+ ++ KGL+ VRRD  LL ++V D CL ++L +R   DV  +I  S   + E +++ +
Sbjct: 826  -YDKMDTKGLETVRRDNCLLVRKVVDTCLRKVLIDR---DVQGAITYSKQVISELLQN-R 880

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            + +   VITK+L K  ++      Q HV++A+R+K+                   + GT+
Sbjct: 881  MDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKR------------------DPGTA 922

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              ++ G A   R  D +   +    ID +YY + Q+   +SRL   I
Sbjct: 923  PNAAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPI 969


>gi|336121549|ref|YP_004576324.1| DNA polymerase Pol2 [Methanothermococcus okinawensis IH1]
 gi|334856070|gb|AEH06546.1| DNA polymerase Pol2 [Methanothermococcus okinawensis IH1]
          Length = 810

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 176/658 (26%), Positives = 308/658 (46%), Gaps = 105/658 (15%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL-KRSEM----PKLRKGRTIFGS 709
            D D++  +N   FD   L  RA+   + +  + K G   K++E+       +  + I  S
Sbjct: 217  DYDIIYTYNGDNFDFPYLKRRAENLGI-NVFFDKTGNDDKKTEIGKKTKTQKHKQKIKIS 275

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL 769
                 + S I G++  D +  +R  L   +Y L  ++       + EVG  ++  ++  +
Sbjct: 276  RGGIHLRSYIPGKVHIDLYPIARRTLNLTTYKLEDVSYELFGVHKLEVGHQNISNLWNNM 335

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL-H 828
            +    L+EY   DA+ + ++  +   LPL    + I      +  +   +Q VEYLLL H
Sbjct: 336  DK--NLVEYSFQDAYYTYKIGEYF--LPLEVMFSRIVNQTLFEVSRMGSSQMVEYLLLKH 391

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            +F+   ++ P                                    N  S+ +++K  R 
Sbjct: 392  SFK-NNFLAP------------------------------------NRPSNREYQKRLR- 413

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-----ERSPDGLVPHLP 943
              Y GG V EP KG+++  I+ +DF +LYPSII  YNI   T+     E   + ++ H  
Sbjct: 414  EYYEGGYVKEPIKGMHEN-IVSMDFRALYPSIIISYNISPDTIDCKCCEDMSEKILGHWF 472

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK--------------IQQLDIQQQALKL 989
              K  G++P +L+NL++RR+ +K  +K     K               + L+ +Q++LK+
Sbjct: 473  CKKRIGLIPMVLRNLIERRKTIKKILKEKDTEKKELNSKNNKYYNEYYKLLNYEQKSLKI 532

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS 1049
             ANS YG + +  +R+Y+K  AE+IT  GR  ++ T++  +     +VIY DTD   +++
Sbjct: 533  LANSHYGYMAYPRARWYSKECAEVITHLGRTYIQKTIEEAE-KYGFKVIYADTDG--LYA 589

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKY----KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
             +++ +  K +  K  + +NK      K +E++ +G YKR + + KK+YA +    K   
Sbjct: 590  VLNENSDKKTLLNKTYEFLNKINEKLPKDMELEFEGYYKRGIFITKKRYALIDENDK--- 646

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
                I  KGL+ VRRDWS ++K+     L  +L E +    VE   N +  +  D+++G+
Sbjct: 647  ----ITIKGLEFVRRDWSNIAKKTQKAVLEILLKEGN----VEKAKNIIKNIITDLKNGK 698

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            +  +  +I   LTK    Y      PHV+VA ++ + G     + GD + YII      +
Sbjct: 699  IDKKDLIIYTQLTKDINEYKTT--APHVEVAKKILKKG--GRLNIGDVIGYII------T 748

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
            SG+   I++RA  P++ K  D  + ID       QI P V R+  S+ G S + L + 
Sbjct: 749  SGNK-SISERAVLPEDAKDYDTSYYID------NQILPPVLRIMESL-GISKDELRNV 798


>gi|118400060|ref|XP_001032353.1| DNA polymerase family B containing protein [Tetrahymena thermophila]
 gi|89286694|gb|EAR84690.1| DNA polymerase family B containing protein [Tetrahymena thermophila
            SB210]
          Length = 1124

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 218/887 (24%), Positives = 376/887 (42%), Gaps = 158/887 (17%)

Query: 457  GENYVLKINYPFKDPPLPADLKG--ENFCSLLGTHSSALEL---------FLVKRKVKGP 505
             ++  LKI Y F  P +PA L+G  E   ++ G    A+           +++   + G 
Sbjct: 194  AQDTYLKI-YTFIPPFIPA-LRGMIEKGYTIDGIRFPAVTFESNIPFALRYMIDADIVGM 251

Query: 506  SWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
             W+ + K  F      +  S C+ EI VD      + +     A++ P+ + + +++ + 
Sbjct: 252  GWIKLDKEKFKIRSLDKHKSRCQIEIDVDCQNVHGMDAQDPQWADIAPLRIFSFDIECLA 311

Query: 564  ------NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMG 617
                  N  +D   I  A+V+  H  + D                  +VR     +F M 
Sbjct: 312  KSGGFPNASKDDPIIQIATVLKIHDQQED------------------IVRT----VFTM- 348

Query: 618  FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ 677
                  D  S     ++    +E  LL      L  +D D+ +G+NI+ FD   +L R +
Sbjct: 349  ------DTCSNIPGCIVKSFKTETELLLEWEKFLQNVDPDIFLGYNITNFDFPYILERGK 402

Query: 678  VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS-GASPGIMSCIAGRLLCDTFLCSRDLLR 736
              ++ +  +  +GR+K + + +++ G+ +  + G          GR+  D  +      +
Sbjct: 403  QLKINNGKYGFMGRIKNT-ITRIKDGKYLSKAMGMRDTKEMNFEGRIQLDMMMHMHRETK 461

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLS 794
              SYSL  ++   LN+ +++V  H  +   Q    E+   L  Y   DA L ++LM  L 
Sbjct: 462  LSSYSLNSVSYHFLNEQKEDVH-HTQISGLQKGDAETRKRLAVYCLKDAQLPLKLMQKLM 520

Query: 795  VLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK--ETKMAKQ 852
             +    ++  ++G                             VP  F + +  + K+A Q
Sbjct: 521  CIYNYTEMARVTG-----------------------------VPINFLFTRGQQIKVASQ 551

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
                    R  + L     N    T     R   +G  + G  VL+PKKG YDK I  LD
Sbjct: 552  LY------RRTKLL-----NLYIPTE----RSQGQGDKFEGAFVLQPKKGFYDKPIATLD 596

Query: 913  FNSLYPSIIQEYNICFTTV---------ERSPDGLVPH----LPSSKTTGVLPELLKNLV 959
            F SLYPSI+  +N+C++T+          +    L PH           G+LP++LK+L+
Sbjct: 597  FASLYPSIMMAHNLCYSTLISKNVAMSMNKDDYTLTPHGDYFAKPHVRQGILPDILKDLL 656

Query: 960  QRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQG 1018
              R+  K  + K    L+   LD +Q ALK++ANS+YG  G    +     ++  +T  G
Sbjct: 657  AARKKAKNELAKETDPLRKAVLDGRQLALKISANSVYGFTGAQVGQLPCLEISSSVTSFG 716

Query: 1019 REILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNK 1070
            R+++ +T D V N        N + +VIYGDTDS+M+  G D I +A     +  + ++K
Sbjct: 717  RQMIEATRDFVLNHYNKANGYNYDSDVIYGDTDSVMVKFGCDSIEEAMKYGKEAAEMISK 776

Query: 1071 KY--KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            K     ++++ + +Y   LL+ KK+YA       D   Y+ I+ KG++ VRRD     +E
Sbjct: 777  KLFINPIKLEFEKVYYPYLLISKKRYAGCFYTKPD--KYDKIDTKGMENVRRDNCQFIRE 834

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP-------- 1180
            + + CL  IL E   + V  SI   +     D+   +V + K VITK+LTK         
Sbjct: 835  MMNTCLRYILVEHKQDGVQRSIQ-FIKGCISDLYQNKVDISKLVITKSLTKKSADDDEGE 893

Query: 1181 ---------------PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
                           P A      Q HV++A ++ +    +    GD +PY+I      +
Sbjct: 894  EDGKKGSSHNNKAKEPSANQYKGKQAHVELAKKMAKRDPGSAPCIGDRIPYVI-----VA 948

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
               S    ++   P  + + D    +D DYY  +QI   ++R+ + I
Sbjct: 949  GAKSAKNYEKVEDPIYVLEND--IPLDYDYYIEKQIKNPITRIYSHI 993


>gi|303275346|ref|XP_003056969.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461321|gb|EEH58614.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1067

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 234/909 (25%), Positives = 391/909 (43%), Gaps = 160/909 (17%)

Query: 487  GTHSSALEL------------FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSP 534
            G H SAL              F+V R + G +WL +         ++ S C+YE   D  
Sbjct: 193  GLHVSALTFMTFESNVLYTLRFMVDRGIVGGNWLELPPGGYHLRAKKSSMCQYE--CDVA 250

Query: 535  KDIRVSSSSK-HVAEVPPVTVTAINLKTV-----FNKRQDVNEIVSASVVCCHKAKIDTP 588
             D  +S + +   +++ P  + +++++       F   +    I  A++V C     D P
Sbjct: 251  FDAVISHAPEGQFSKLAPFRILSVDIECAGRRGHFPDAEHDPVIQIATMVTCQGD--DKP 308

Query: 589  MLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLM 648
            ++ + W              LD    P+             G++VL   + ER LL    
Sbjct: 309  IIKAIWT-------------LDT-CAPI------------VGADVLSF-TDERELLRSWG 341

Query: 649  IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIF 707
              L   D D+L+G+NI  FD   L++RA    V     W   GR+  S   KLR   T F
Sbjct: 342  KFLRSTDPDLLIGYNIVNFDFPYLINRAATLGVEDFPYW---GRMIGS---KLRMKDTTF 395

Query: 708  GS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLK 764
             S   G        I GR+  D     +   +  SYSL  ++   L + +++V  H  + 
Sbjct: 396  SSKAYGTRDSKEITIEGRVQFDLLQAVQRDHKLSSYSLNAVSAHFLGEQKEDVH-HSAIS 454

Query: 765  MFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
              Q  T E+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V
Sbjct: 455  ELQAGTSETRRRLAVYCLKDAYLPQRLLDKLMYMYNYIEMARVTGVPLSFLLSRGQSIKV 514

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
               +L   R +  +VP          M K+ ++                         D 
Sbjct: 515  LSQILRKARQRGLLVP---------HMPKKGAS-------------------------DQ 540

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------------ 930
            ++G  G AY G  VL+ K G Y+  I  LDF SLYPSI+  +N+C+ T            
Sbjct: 541  QEG--GVAYEGATVLDAKAGYYELPIATLDFASLYPSIMMAHNLCYCTLVPQNMVSRMNP 598

Query: 931  --VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
              V +SP G V  + S+KT G+LPE+L+ L+  R+  K  +K A   L+   LD +Q AL
Sbjct: 599  EDVSKSPTGDV-FVKSNKTKGILPEILEELLSARKRAKADLKKAQDPLEKAVLDGRQLAL 657

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAEL---ITQQGREILRSTVDLVQNNLNL--------E 1036
            K++ANS+Y   GF+ +   A P  E+    T  GR ++  T +LV    N         +
Sbjct: 658  KVSANSVY---GFTGATVGALPCLEISASTTSYGRNMIDQTKELVMEKYNTKNGYSANAD 714

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYA 1095
            VIYGDTDS+MI   + D+ +A  +  +    V+  + K ++++ + +Y   LL+ KK+YA
Sbjct: 715  VIYGDTDSVMIKFNVTDLEEAMKLGEEAATYVSSTFIKPIKLEFEKVYWPYLLISKKRYA 774

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
               + + +   ++ ++ KG++ VRRD  LL ++V +  L +IL  R     V+ +  ++ 
Sbjct: 775  G--LLWTNPKKHDYMDTKGIETVRRDNCLLVRQVIETVLQKILISRDVPGAVDYVKRTI- 831

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
                D+   ++ L   VITK LT+  +AY +     HV++A R+K+   +T    GD + 
Sbjct: 832  ---SDLLMNRMDLSLLVITKGLTQDADAYEN--KAAHVELAKRMKERDPATAPVVGDRIA 886

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+I      + G         +  D +   +    ID  +Y    +   + R+   I   
Sbjct: 887  YVIVKAAKNAKGYE-------KSEDPIWAMEHNLPIDCQHYLDHYLGKPLMRIFEPIMKD 939

Query: 1276 SPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFD 1335
            +  +L   L  D ++  S+P+      PSS    A G   R+       LSC  C ++  
Sbjct: 940  ASSQL---LKGDHTRAISQPT------PSS----AAGGIMRFAKVR---LSCVGCKASIT 983

Query: 1336 CPAVCSSIC 1344
                 +++C
Sbjct: 984  DEKTSTALC 992


>gi|343428135|emb|CBQ71665.1| probable DNA polymerase delta catalytic subunit [Sporisorium
            reilianum SRZ2]
          Length = 1057

 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 215/847 (25%), Positives = 368/847 (43%), Gaps = 143/847 (16%)

Query: 468  FKDPPLPAD--LKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVS 523
            F+D   P D  L  EN    L         F++  K+ G +W+ +  + +   P  Q+VS
Sbjct: 187  FRDLFTPGDASLTYENITYTLR--------FMIDLKIVGMNWIRVQPANYKLRPDSQKVS 238

Query: 524  WCKYEITVDSPKDIRVSSS-SKHVAEVPPVTVTAINL-----KTVFNKRQDVNEIVSASV 577
             C+ E+  D   D  VS +     +++ P+ + + ++     K VF +   ++ ++  + 
Sbjct: 239  LCQIEL--DCSCDAIVSHAPDDEWSKIAPLRILSFDIECAGRKGVFPE-PSIDPVIQIAN 295

Query: 578  VCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCE 637
            +   + +  TP + + +      SH         G   + FNKE                
Sbjct: 296  MVTRQGE-STPFVKNVFTL-NTCSHIV-------GSQVLSFNKEID-------------- 332

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
                 +L      + ++D DV++G+NI+ FD   LL RA+  +  S+ ++ +GR +  R+
Sbjct: 333  -----MLEAWTKFVQEVDPDVVIGYNIANFDFPYLLDRAKALK--STKFAYLGRERGVRT 385

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            E          +G+  S    + + GRL  D     +   +  SYSL  ++   L + ++
Sbjct: 386  EAKDTHFSSKAYGTRDSKN--TELQGRLQLDMLQVMQRDYKLRSYSLNSVSFEFLGEQKE 443

Query: 756  EVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ES   L  Y   DA+L   LM  L       ++  ++G  +   
Sbjct: 444  DVH-HSLITELQNAGPESRRRLAVYCLKDAYLPQRLMDKLMCFINYIEMARVTGVPFNYL 502

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   L        Y+VP    Y  E          G ED+            
Sbjct: 503  LSRGQQIKVVSQLFRKANEDNYLVP---AYKGE----------GTEDQ------------ 537

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                             Y G  VLEPK G YD+ I  LDF SLYPS++  +N+C+TT+  
Sbjct: 538  -----------------YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLLD 580

Query: 932  ERSPDGL----------VPHLPSSKT----TGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
            +++ D L           P+     T     G+LP +L+NL+  R+  K  +K  +   K
Sbjct: 581  KKTIDRLELKQDEDYVITPNNNCFATKKLRKGLLPTVLENLLAARKRAKADLKKETDPFK 640

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL- 1035
               LD +Q ALK++ANS+YG  G +  +     ++   T  GR+++  T   V+ +  + 
Sbjct: 641  RAVLDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVERHYTIA 700

Query: 1036 -------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                   EV+YGDTDS+MI  G+ D+AKA  +  +    V+K +   ++++ + +Y   L
Sbjct: 701  NGYEHDAEVVYGDTDSVMIKFGVPDLAKAMELGAEAAGLVSKTFVDPIKLEFEKVYFPYL 760

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA   + +     Y+ ++ KG++ VRRD   L + V D CL ++L +R  +   
Sbjct: 761  LISKKRYAG--LYWTRPEKYDKMDTKGIETVRRDNCRLVQTVIDTCLRKMLIDRDVKGAE 818

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E   N    +  D+   +V + + VITK L K       A  Q HV++A R+++    + 
Sbjct: 819  EYAKN----IISDLLQNKVDMSQLVITKALAKSDY----AAKQAHVELAERMRKRDAGSA 870

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             + GD V Y+I         ++ G A   R  D +   D    ID  YY   Q+   + R
Sbjct: 871  PALGDRVAYVIV-------KAAKGAAAYERSEDPIYVLDHNIPIDTRYYLENQLAKPLLR 923

Query: 1268 LCASIEG 1274
            +   I G
Sbjct: 924  IFEPIMG 930


>gi|1840091|gb|AAB47255.1| DNA polymerase delta' [Mesocricetus auratus]
          Length = 1102

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 178/655 (27%), Positives = 305/655 (46%), Gaps = 95/655 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +  +DSDV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +      + R +   
Sbjct: 380  ILAMDSDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 436

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   
Sbjct: 437  GRRDSKVVSMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 492

Query: 767  QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R Q+V+ 
Sbjct: 493  QNGNEQTRRRLAVYCLRDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--SRGQQVKV 550

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +                     +++ +Q    G+    V+    ED              
Sbjct: 551  V---------------------SQLLRQAMRQGLLMPVVKTEGGED-------------- 575

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R          P
Sbjct: 576  ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 629

Query: 936  DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
            D  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q LD +Q ALK
Sbjct: 630  DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 689

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYG 1040
            ++ANS+YG  G    +     +++ +T  GR+++  T  LV++        N N +V+YG
Sbjct: 690  VSANSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYG 749

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ KK+YA +  
Sbjct: 750  DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 809

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    +    V  
Sbjct: 810  SSQPDT-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 864

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+I 
Sbjct: 865  DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 922

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                   G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 923  -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLGQQLAKPLLRIFEPILG 970


>gi|384486877|gb|EIE79057.1| hypothetical protein RO3G_03762 [Rhizopus delemar RA 99-880]
          Length = 1059

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 182/683 (26%), Positives = 316/683 (46%), Gaps = 97/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VLC +  E  LL +    + ++D D+++G+N + FD   LL RAQ   V  + +  
Sbjct: 317  VGSQVLCFDD-ESELLKKWSDFIREVDPDMIIGYNTTNFDFPYLLDRAQHLGV--NKFPF 373

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+   ++E    +     FG   +  I   + GRL  D     +   +  SY+L  ++
Sbjct: 374  LGRISGVKTEAKDTKFQSKAFGQRENKSIN--LEGRLQLDMLQAIQRDYKLRSYTLNSVS 431

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    E+   L  Y   DA+L + LM  L +L    ++  
Sbjct: 432  AEFLGEQKEDVH-HSIITELQKGNPETRRRLAVYCLKDAFLPLRLMDKLMLLFNYTEMAR 490

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   +  +V   L      +  ++P     +K                   
Sbjct: 491  VTGIPFNYILVRGQQIKVVSQLYRRALEQDLVIP----VIKS------------------ 528

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            E+ +E                     Y G  V++P+KG YD  I  LDF SLYPSI+Q +
Sbjct: 529  EIMDE--------------------PYEGATVIDPEKGYYDVPITTLDFTSLYPSIMQAH 568

Query: 925  NICFTTVERSPD-----GLVP------------HLPSSKTTGVLPELLKNLVQRRRMVKT 967
            N+C+TT+ + P+     GLV              + +++  G+LPE+L +L+  R+  K 
Sbjct: 569  NLCYTTLLK-PEVAQRLGLVKGVDYEVTPNNDLFVKATRRKGLLPEILSDLLSARKRAKN 627

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K      K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR ++  T 
Sbjct: 628  DLKKEKDPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLQISSSVTAYGRGMIIKTK 687

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
            + V+++         + +VIYGDTDS+MI  G+D++ +A  +  +  + V +K+ + + +
Sbjct: 688  ETVEDHFSKKNGYKHDAKVIYGDTDSVMIKFGVDNLKEAMQLGRESAKLVTEKFIRPINL 747

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            D + +Y   LL+ KK+YA +    +D   Y+ ++ KG++ VRRD   L   V   CL ++
Sbjct: 748  DFEKVYFPYLLISKKRYAGLYWTREDK--YDKLDAKGIETVRRDNCRLVSNVISKCLDKL 805

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R+     E +  ++     D+   +V L + VITK L+K       A  Q HV++A 
Sbjct: 806  LVQRNVAGAQEFVKQTIA----DLLQNKVDLSQLVITKALSKSDY----ANKQAHVELAE 857

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD V Y+I       +G++     R+  P  L   D    ID  YY 
Sbjct: 858  RMRKRDAGSAPALGDRVAYVII-----KAGNNTPAYDRSEDP--LYVLDHNIPIDTKYYL 910

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+   I G   E L
Sbjct: 911  EHQLSKPLLRIFEPILGDKAESL 933


>gi|255077772|ref|XP_002502470.1| predicted protein [Micromonas sp. RCC299]
 gi|226517735|gb|ACO63728.1| predicted protein [Micromonas sp. RCC299]
          Length = 1147

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 199/760 (26%), Positives = 345/760 (45%), Gaps = 120/760 (15%)

Query: 496  FLVKRKVKGPSWLSI-SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            F+V R V G +W+ + +   +    Q+ S C+YE  V   K +      ++ +++ P  +
Sbjct: 291  FMVDRGVVGGNWVELPAGGYTIRESQKQSMCQYECDVKFDKVVSHPPEGQY-SKLAPFRI 349

Query: 555  TAINLKTVFNKRQ----DVNEIVS-ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
             +++++    K      D + ++  A++V C     D P++ + W              L
Sbjct: 350  LSVDIECAGRKGHFPDADHDPVIQIATMVTCQGD--DRPIIKAIWT-------------L 394

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
            D    P+             G++VL  +  ER LL      L   D D+L+G+NI  FD 
Sbjct: 395  DT-CAPI------------VGADVLSFKD-ERELLRSWGKFLRSTDPDLLIGYNIVNFDF 440

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCD 726
              L++RA+  R+    ++  GR+  S   KLR   T F S   G        I GR+  D
Sbjct: 441  PYLINRAE--RLNVEDFAYWGRMIGS---KLRMKDTTFSSKAYGTRDSKEITIEGRVQFD 495

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAW 784
                 +   +  SYSL  ++   L + +++V  H  +   Q  T E+   L  Y   DA+
Sbjct: 496  LLQAVQRDHKLSSYSLNAVSAHFLGEQKEDVH-HSAISELQAGTAETRRRLAVYCLKDAY 554

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   L+  L  +    ++  ++G      L  AR Q ++ L  +L   + +  +VP    
Sbjct: 555  LPQRLLDKLMYMYNYIEMARVTGVPLSFLL--ARGQSIKVLSQILRKAKQRGLLVP---- 608

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                  +AK+                               +   G AY G  VL+ K G
Sbjct: 609  -----HIAKKGGGE---------------------------QADGGVAYEGATVLDAKAG 636

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT--------------VERSPDGLVPHLPSSKTT 948
             Y+  +  LDF SLYPSI+  +N+C++T              V R+P G    + S K  
Sbjct: 637  YYEMPVATLDFASLYPSIMMAHNLCYSTLVPRDRVQFMASEDVTRTPCGDT-FVKSHKEK 695

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LPE+L  L+  R+  K  +K A   L+   LD +Q ALK++ANS+YG  G +  +   
Sbjct: 696  GILPEILTELLSARKRAKADLKKAQDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPC 755

Query: 1008 KPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKA 1059
              ++   T  GRE++  T  +V+           N +VIYGDTDS+MI   + ++  A  
Sbjct: 756  LEISSSTTAFGREMIDHTKAMVEKRYTTANGYKANADVIYGDTDSVMIKFNVPELEDAMK 815

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +  + V+  + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ V
Sbjct: 816  LGEEAAEYVSATFIKPIKLEFEKVYFPYLLISKKRYAG--LLWTKTEKYDYMDTKGIETV 873

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  L+ ++V + CL +IL  R+ +  +  + N++     D+   ++ +   VITK+L+
Sbjct: 874  RRDNCLMVRQVIETCLEKILIHRNPKGAISYVKNTI----SDLLMNKLDMSLLVITKSLS 929

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            + PE Y  A N PHV++A ++      T    GD V Y++
Sbjct: 930  QAPENY--AVNAPHVELAKKMAVRDPVTAPVVGDRVAYVM 967


>gi|324120746|dbj|BAJ78764.1| DNA polymerase delta catalytic subunit [Neocolochelyna itoi]
          Length = 1003

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 183/681 (26%), Positives = 307/681 (45%), Gaps = 96/681 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +  E  +L +    + + D DV  G+NI+ FD   L++RAQ  +V S  +S +
Sbjct: 264  GSQVLSFQK-EAIMLEKWADFVRQCDPDVFTGYNINNFDFPYLINRAQHLKVKS--FSYL 320

Query: 690  GRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            GR+K  ++  + K + +     G          GR+  D  L      +  SY+L  ++ 
Sbjct: 321  GRIK--DIKSVIKDQVLQSKQMGRRENKHVNFEGRVPFDLLLVLVRDYKLRSYTLNAVSY 378

Query: 748  TQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  +
Sbjct: 379  HFLQEQKEDVH-HSIITDLQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARV 437

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G      L   +  +V   LL   R + Y++P                  G +++    
Sbjct: 438  TGVSLCSLLTKGQGVKVVSQLLRKARERGYLMP-------------THQGQGTDEQ---- 480

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     Y G  V+EPK+G Y+  I  LD++SLYPSII  +N
Sbjct: 481  -------------------------YEGATVIEPKRGYYNDPIATLDYSSLYPSIIMAHN 515

Query: 926  ICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            IC+TT+                 R+P   +  + SS   G+LPE+L+NL+  R+  KT +
Sbjct: 516  ICYTTLLGPATQHKLKLTEDKYTRTPTTAM-FVKSSVRKGLLPEILENLLTARKAAKTEL 574

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K      K + LD +Q ALK++ANS+YG  G  N +     ++   T  GRE++  T   
Sbjct: 575  KNEKDPFKQKVLDGRQLALKVSANSVYGFTGAQNGKLPCLEISSSTTAYGREMIEQTKQE 634

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +         VIYGDTDS+M+  G+  I  A  +  +  + V+ K+ K ++++ 
Sbjct: 635  VEQRYCVANGYKHDAVVIYGDTDSVMVKFGVKTIEDAMELGTEAAEFVSLKFIKPIKLEF 694

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 695  EKIYFPYLLINKKRYAGLLFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 752

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER  +   +       ++  D+   ++ + + VITK LTK       A  Q HV++A ++
Sbjct: 753  ERDPDGATDYAK----QIISDLLCNRIDISQLVITKELTKTEY----AAKQAHVELAAKM 804

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+    T    GD VPY+      TS+       Q+A  P  +   +    ID +YY   
Sbjct: 805  KKRDAGTAPKLGDRVPYVF-----TSAAKGTPAYQKAEDP--IYVLENSIPIDSNYYLEN 857

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + R+   I G   E L
Sbjct: 858  QLSKPLLRIFEPILGDKAESL 878


>gi|291190618|ref|NP_001167152.1| DNA polymerase delta catalytic subunit [Salmo salar]
 gi|223648376|gb|ACN10946.1| DNA polymerase delta catalytic subunit [Salmo salar]
          Length = 1105

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 234/984 (23%), Positives = 422/984 (42%), Gaps = 167/984 (16%)

Query: 347  SGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRI 406
            S  N+  + +FG   +G++   CC V           PNG  F +D + + +++   + +
Sbjct: 111  SQGNVPIIRMFGVTDSGNS--VCCHVHGFAPYFYIPAPNG--FTSDHLSEFKRELNSAVL 166

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY 466
              M   K    V +        + +       IV  ++   A  +   PA       +  
Sbjct: 167  KDMRSNKDNMSVTVLAVDITRKETMYGYHGKRIVDFLRITMAMPRLIAPAKR----LLEQ 222

Query: 467  PFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF------------S 514
             FK  P P     ++F S        +  F+V   V G  W+ + K             +
Sbjct: 223  GFKFGPFPI----QSFSSYEANIDFEIR-FMVDSDVVGCCWIELPKGKYRVRAERKVGET 277

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDV 569
                P +VS C+YE+ V   + I   +  ++   + P+ V + ++     K +F + +  
Sbjct: 278  DAHYPGKVSLCQYEVDVGWTQLISHPAEGEY-QRIAPLRVLSFDIECAGRKGIFPEAEKD 336

Query: 570  NEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
              I  AS+V     K           +P + + FT+                    +S  
Sbjct: 337  PVIQIASMVQRQGEK-----------EPFIRTVFTL-----------------QSCSSIV 368

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC  + E  LL      +  +D+D++ G+NI  FDL  LL+RA   +V  +++  +
Sbjct: 369  GSQVLCF-TKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKV--NLFPYL 425

Query: 690  GR-------LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---S 739
            GR       L+ S     + GR          I++ + GR+  D     + LLR+    S
Sbjct: 426  GRVQGIKSVLRDSSFQSKQMGRR------ENKILN-MEGRVQFDLL---QVLLRDYKLRS 475

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLP 797
            Y+L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + 
Sbjct: 476  YTLNAVSFHFLQEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVI 534

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
               ++  ++G      L  +R Q+++ +                     +++ +Q    G
Sbjct: 535  NYMEMARVTGVPLTYLL--SRGQQIKVV---------------------SQLLRQAMKQG 571

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
            +    V+    ED                    Y G  V+EP+KG Y   I  LDF+SLY
Sbjct: 572  LVMPVVKPEGGED--------------------YTGATVIEPEKGYYSVPIATLDFSSLY 611

Query: 918  PSIIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRR 962
            PSI+  +N+C+TT+ +       GL P            + SS   G+LP++L++L+  R
Sbjct: 612  PSIMMAHNLCYTTLLQKGSAEKLGLNPEDFIKTPTGDLFVKSSVRKGLLPDILEDLLSAR 671

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  K  +K  +   K Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR++
Sbjct: 672  KKAKAELKNETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 731

Query: 1022 LRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +  T  LV++   +        +VIYGDTDS+M+  G+D +++A  +  +  + V+  + 
Sbjct: 732  IEQTKQLVESKYTIANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGREAAEWVSSHFT 791

Query: 1074 -CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + 
Sbjct: 792  PPIKLEFEKVYYPYLLINKKRYAGLYFS-SSADTHDKMDCKGIETVRRDNCTLVANLINT 850

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            CL  IL +R  +  V        +V  D+   ++ + + VITK LT+  + Y  A  Q H
Sbjct: 851  CLQTILIDRDPQGAVAHAK----EVISDLLCNRIDISQLVITKELTRTAQEY--AAKQAH 904

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A R+K+    +    GD VPY+I         ++ G+A   +  D +   +    ID
Sbjct: 905  VELAERMKKRDAGSAPQLGDRVPYVII-------KAAKGVAAYMKSEDPIYVLENNIPID 957

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
              YY  QQ+   + R+   I G S
Sbjct: 958  TQYYLEQQLSKPLLRIFEPILGES 981


>gi|357157316|ref|XP_003577757.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Brachypodium
            distachyon]
          Length = 1106

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 170/649 (26%), Positives = 294/649 (45%), Gaps = 94/649 (14%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GA 711
            D D+++G+NI  FDL  L+ RA+V ++    +  +GR++ S   ++R   T F S   G 
Sbjct: 394  DPDIIIGYNICKFDLPYLIERAEVLKIVE--FPLLGRIRNS---RVRVRDTTFNSRQYGV 448

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--L 769
                   + GR+  D     +   +  SYSL  ++   L + +++V  H ++   Q    
Sbjct: 449  RESKDVTVEGRVQFDLLQAVQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIISDLQNGNS 507

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            E+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V   LL  
Sbjct: 508  ETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRK 567

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             + +  ++P                                         N   +G    
Sbjct: 568  AKQRNLVIP-----------------------------------------NIKGQGSGQD 586

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT----------------VER 933
             + G  VLE + G Y+K I  LDF SLYPSI+  +N+C+ T                + +
Sbjct: 587  TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAHNLCYCTLVPPEDVRKLNLPPESLYK 646

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTAN 992
            +P G +   P  +  G+LPE+L+ L+  R+  K  +K A    +   LD +Q ALK++AN
Sbjct: 647  TPSGEIFVKPELQ-KGILPEILEELLTARKRAKADLKEAKDPFERAVLDGRQLALKISAN 705

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDS 1044
            S+YG  G +  +     ++  +T  GR+++  T  LV++          N EVIYGDTDS
Sbjct: 706  SVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDS 765

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            +M+  G+  +  A  +  +    ++  + K ++++ + +Y   LL+ KK+YA   + + +
Sbjct: 766  VMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTN 823

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
               ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+ + N++     D+  
Sbjct: 824  PEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTI----SDLLM 879

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             +V L   VITK LTK  E Y  A    HV++A R+++   +T  + GD VPY+I     
Sbjct: 880  NRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAPTVGDRVPYVII---- 933

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                ++ G     +  D +   D    ID  YY   QI   + R+   I
Sbjct: 934  ---KAAKGAKAYEKSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPI 979


>gi|71005878|ref|XP_757605.1| hypothetical protein UM01458.1 [Ustilago maydis 521]
 gi|46097098|gb|EAK82331.1| hypothetical protein UM01458.1 [Ustilago maydis 521]
          Length = 1057

 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 214/844 (25%), Positives = 362/844 (42%), Gaps = 137/844 (16%)

Query: 468  FKDPPLPAD--LKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVS 523
            F+D   P D  L  EN    L         F++  K+ G +W+ +  + +   P  Q+VS
Sbjct: 187  FRDLFTPGDVSLTYENIAYTLR--------FMIDLKIVGMNWVRVQPANYRLRPESQKVS 238

Query: 524  WCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKA 583
             C+ E+   S   I   +     +++ P+                   I+S  + C  + 
Sbjct: 239  LCQIELDC-SCDAIASHAPDDEWSKIAPL------------------RILSFDIECAGRK 279

Query: 584  KIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS---KAGSNVLCCESSE 640
             I        + +P +     +   +     P  F K     N+     GS VL   + E
Sbjct: 280  GI--------FPEPSVDPVIQIANMVTRQGEPTPFVKNVFTLNTCSHIVGSQVLSF-NKE 330

Query: 641  RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMP 698
              +L      + ++D DV++G+NI+ FD   LL RA+  +  S+ ++ +GR +  R+E  
Sbjct: 331  VDMLEAWTKFVQEVDPDVVIGYNIANFDFPYLLDRAKALK--STKFAYLGRERGARTEAK 388

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
                    +G+  S    + + GRL  D     +   +  SYSL  ++   L + +++V 
Sbjct: 389  DTHFSSKAYGTRDSKN--TELQGRLQLDMLQVMQRDYKLRSYSLNSVSFEFLGEQKEDVH 446

Query: 759  PHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             H ++   Q    ES   L  Y   DA+L   LM  L       ++  ++G  +   L  
Sbjct: 447  -HSLITELQNAGPESRRRLAVYCLKDAYLPQRLMDKLMCFINYIEMARVTGVPFNYLLSR 505

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             +  +V   L        Y+VP    Y  E          G ED+               
Sbjct: 506  GQQIKVVSQLFRKANEDNYLVP---AYKGE----------GTEDQ--------------- 537

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERS 934
                          Y G  VLEPK G YD+ I  LDF SLYPS++  +N+C+TT+  +++
Sbjct: 538  --------------YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLLDKKT 583

Query: 935  PDGL----------VP---HLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQ 979
             D L           P   +  + K   G+LP +L+NL+  R+  K  +K  +   K   
Sbjct: 584  IDRLELKQDEDYVITPNNNYFATKKLRKGLLPTVLENLLAARKRAKADLKKETDPFKRAV 643

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL---- 1035
            LD +Q ALK++ANS+YG  G +  +     ++   T  GR+++  T   V+ +  +    
Sbjct: 644  LDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVEKHYTIANGY 703

Query: 1036 ----EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLK 1090
                EV+YGDTDS+MI  G+ D+A+A  +  +    V+K +   ++++ + +Y   LL+ 
Sbjct: 704  EYDAEVVYGDTDSVMIKFGVPDLARAMELGAEAAGLVSKTFVDPIKLEFEKVYFPYLLIS 763

Query: 1091 KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
            KK+YA   + +     Y+ ++ KG++ VRRD   L + V + CL ++L +R  +   E  
Sbjct: 764  KKRYAG--LYWTRAEKYDKMDTKGIETVRRDNCRLVQTVIETCLRKMLIDRDVKGAEEYA 821

Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
             N    +  D+   +V + + VITK L K       A  Q HV++A R+++    +  S 
Sbjct: 822  KN----IISDLLQNKVDMSQLVITKALAKSDY----AAKQAHVELAERMRKRDAGSAPSL 873

Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
            GD V Y+I         ++ G A   R  D +   D    ID  YY   Q+   + R+  
Sbjct: 874  GDRVAYVIV-------KAAKGAAAYERSEDPIYVLDHNIPIDTRYYLENQLAKPLLRIFE 926

Query: 1271 SIEG 1274
             I G
Sbjct: 927  PIMG 930


>gi|301087457|gb|ADK60920.1| DNA polymerase [Thermococcus celer]
          Length = 774

 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 288/646 (44%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVLV +N   FD   L  R++       +   +GR      
Sbjct: 185  STEKEMIKRFLQVVKEKDPDVLVTYNGDNFDFAYLKRRSEEL----GLKFILGR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAV--------EVKGRIHFDLYPVIRRTVNLPTYTLEAVYEAIFGRPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTLQG 816
               ++++ ++T E L  +  Y   DA ++ EL       P+  QL+ + G  LW  + + 
Sbjct: 291  YAGEIVEAWETGEGLERVARYSMEDAKVTFEL--GREFFPMEAQLSRLIGQGLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K             S   VE R               
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK------------PSGREVEIR--------------- 380

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                     +RG  YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 381  ---------RRG--YAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL  L++ R+ +K  MK +   ++ + LD +Q+A+
Sbjct: 429  ENYDVAPQ--VGHKFCKDFPGFIPSLLGGLLEERQKIKRRMKASVDPVERKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y +  AE +T  GRE +   +  ++     +V+Y DTD +  
Sbjct: 487  KILANSFYGYYGYARARWYCRECAESVTAWGREYIDRVIRELEEKFGFKVLYADTDGLHA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A   ++ +N K    LE++ +G Y R   + KKKYA +  + K    
Sbjct: 547  TIPGADAGTVKERARGFLRYINPKLPGLLELEYEGFYLRGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEVAKETQARVLEAILRHGDVEEAVRIVR----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+    Y      PHV VA RL  +G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLRDY--KATGPHVAVAKRL--AGRGVRIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      ++  D DYY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPTKHRY--DADYYIENQVLPAVERILKAF 748


>gi|440804295|gb|ELR25172.1| polymerase (DNA directed), delta 1, catalytic subunit [Acanthamoeba
            castellanii str. Neff]
          Length = 1003

 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 205/809 (25%), Positives = 347/809 (42%), Gaps = 117/809 (14%)

Query: 496  FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++ +K+ G +WL ++  K+   P  Q+VS C++E+      DI   +     +++ P  
Sbjct: 142  FMIDKKMTGAAWLELAANKYEVVPDDQKVSHCQFELHAKE-TDITGHAPEGVWSDIAPFR 200

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            V + +++    +R    E     V+                     +++   V+  +G I
Sbjct: 201  VLSFDIECA-GRRGVFPEPEMDPVI--------------------QIANVVSVQGENGPI 239

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVL 672
                F  +    +  AG+ V C  +    LL  R  +E+  +D D+L G+NI  FD+  L
Sbjct: 240  VKNVFTVKKC--SPIAGAEVRCYRTEAEMLLAWRKFVEI--VDPDILTGYNIINFDIWYL 295

Query: 673  LHRAQ-VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
            L RAQ +  V    W +I + +RS M         FG   S  I   I GR+  D  L  
Sbjct: 296  LTRAQKLGLVDFPFWGRI-KAQRSTMKDTTFSSKAFGKRDSKEIK--IGGRVQLDVLLVI 352

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELM 790
                +  SY+L  +++  L + +++V    +  ++  T +    L  Y   DA L   L+
Sbjct: 353  TRDYKLRSYTLNYVSQHFLEEQKEDVHHSIITDLYNGTNDQRRRLAVYCIKDALLPQRLL 412

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
              L  +    ++  ++G      L   +  +V   L      +  ++P         K+A
Sbjct: 413  DKLMCIINYIEMARVTGVPIAFLLTRGQQIKVLSQLYRIANTEDLLIP-------AVKVA 465

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
            K               T ED                 G  Y G +V+ PK   YD  I  
Sbjct: 466  KP--------------TGED-----------------GKGYKGAIVIAPKTAYYDVPIAT 494

Query: 911  LDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLK 956
            LDF SLYPSI+  +N+C++T+              ERSP G    +      G+LP +L 
Sbjct: 495  LDFASLYPSIMIAHNLCYSTLLAPGEVNSHPPESYERSPGGEC-FVREETKPGLLPRILN 553

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
             L++ R   K  MK  +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T
Sbjct: 554  GLLEARARAKAEMKKETNPFKQAVLNGRQLALKVSANSVYGFTGATIGKLPCLAISSAVT 613

Query: 1016 QQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQE 1067
              GRE++  T   V     +E        VIYGDTDS+M++ G+  + +A  +  +  + 
Sbjct: 614  AYGREMIEKTQATVLERYRVENGYSHTADVIYGDTDSVMVNFGVKTVEEAMKLGREAAEY 673

Query: 1068 VNKKYKCLE----IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
            + K   C E    ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD  
Sbjct: 674  ITK--HCFEQPIKLEFEKVYYPYLLISKKRYAGLWWGRPDK--YDHMDAKGIETVRRDNC 729

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L + V   CL +IL ER+ +  V+ +     ++  D+   ++ L   VITK +++  E 
Sbjct: 730  ALVRNVVQECLDRILIERNIDSAVDYVK----QIISDLLCNRLDLSLLVITKQISRNSED 785

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            Y     Q HV++A R+ +    +    GD VPY+I          + G     R  D L 
Sbjct: 786  Y--KAKQAHVELAERMAKRDAGSAPVVGDRVPYVIV-------KGAKGSRAYERAEDPLH 836

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              +    +D  YY  QQ+   + R+   I
Sbjct: 837  VLEHNIPLDAQYYLHQQLEKPLLRIFKPI 865


>gi|8777309|dbj|BAA96899.1| DNA polymerase III catalytic subunit [Arabidopsis thaliana]
          Length = 1081

 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 181/673 (26%), Positives = 304/673 (45%), Gaps = 99/673 (14%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
             G +V+  E+    LL  R +I    +D D+++G+NI  FDL  L+ RA    +    + 
Sbjct: 358  VGVDVMSFETEREVLLAWRDLIR--DVDPDIIIGYNICKFDLPYLIERAATLGIEE--FP 413

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             +GR+K S   ++R   + F S   G      + I GR   D         +  SYSL  
Sbjct: 414  LLGRVKNS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNS 470

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L++ +++V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++
Sbjct: 471  VSAHFLSEQKEDVH-HSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 529

Query: 803  TNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
              ++G      L  AR Q ++ L  LL   + K  ++P+          AKQ        
Sbjct: 530  ARVTGVPISFLL--ARGQSIKVLSQLLRKGKQKNLVLPN----------AKQ-------- 569

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                    G     Y G  VLE + G Y+K I  LDF SLYPSI
Sbjct: 570  -----------------------SGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSI 606

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMV 965
            +  YN+C+ T+    D    +LP    T               G+LPE+L+ L+  R+  
Sbjct: 607  MMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRA 666

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K A   L+   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  
Sbjct: 667  KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQ 726

Query: 1025 TVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T  LV++          N EVIYGDTDS+M+  G+ D+  A  +  +  + ++  + K +
Sbjct: 727  TKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPI 786

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD  LL K +    L+
Sbjct: 787  KLEFEKVYFPYLLINKKRYAG--LLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLN 844

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            +IL +R      E++  ++     D+   ++ L   VITK LTK  + Y       H ++
Sbjct: 845  KILIDRDVPGAAENVKKTI----SDLLMNRIDLSLLVITKGLTKTGDDY--EVKSAHGEL 898

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+++   +T  + GD VPY+I         ++ G     R  D +        ID +Y
Sbjct: 899  AERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLQNNIPIDPNY 951

Query: 1256 YASQQIHPVVSRL 1268
            Y   QI   + R+
Sbjct: 952  YLENQISKPLLRI 964


>gi|209882407|ref|XP_002142640.1| DNA polymerase family B [Cryptosporidium muris RN66]
 gi|209558246|gb|EEA08291.1| DNA polymerase family B, putative [Cryptosporidium muris RN66]
          Length = 1123

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 190/681 (27%), Positives = 303/681 (44%), Gaps = 95/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AG+ VL  ++ E+ LL      +  +D D+L G+N   FD+  L  RA++  + +  +  
Sbjct: 387  AGAFVLWFDN-EQDLLLAWREFIISIDPDILTGYNCINFDMFYLFERAKIFGLKNFFYLS 445

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
                 +S +   R     FG   S      I GR+  D     R   +  SY+L  ++ T
Sbjct: 446  RITSTKSVIKSTRFSSKAFGIHDSKSFN--IEGRIFWDLLESIRREYKLKSYTLNYVSTT 503

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L K++KE   + ++   Q  T E+   +  Y   D+ L + LM HL + P   ++  ++
Sbjct: 504  FL-KEQKEDVHYSMIHSLQEGTPETRKRIAVYCLKDSLLPLRLMKHLKLFPNIIEMARVT 562

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G      L   +  +V   +L   ++  +I+P             +RS   VED+     
Sbjct: 563  GTTLDILLSRGQQIKVTSQILRKCKSLNFIMP-----------TLKRSGESVEDQ----- 606

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    Y G  VLEP KG Y   I  LDF SLYPSI+  +NI
Sbjct: 607  ------------------------YEGATVLEPVKGFYKDPISTLDFASLYPSIMIAHNI 642

Query: 927  CFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-T 971
            C++T+               +SP G    L SS   G+LP +++ L+  R+  +  M  T
Sbjct: 643  CYSTLVPSNDADHLSDDFKRKSPAGHTFVL-SSVRKGILPLIVEELILARKKARKEMSVT 701

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSN-SRFYAKPLAELITQQGREILRSTVDLVQ 1030
               + +  LD +Q ALK++ANS+YG  G +   +F    ++  IT  GR ++  T   V+
Sbjct: 702  KDPVLLSILDGRQLALKISANSVYGYTGATTGGQFPCLEISTSITSYGRSMIDFTKMEVE 761

Query: 1031 NNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDG 1081
               N+         VIYGDTDS+M+  G  DI++A  +  K   E++  +   + ++ + 
Sbjct: 762  KRYNIANGYKHNATVIYGDTDSVMVQFGTSDISEAMDLGLKAATEISDMFLSPIRLEFEK 821

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA   V +K+   YE I+ KG++ VRRD  LL ++V D  L +IL  +
Sbjct: 822  VYCPFLLMNKKRYAG--VLYKNSETYEKIDCKGIETVRRDNCLLVQQVADIVLKKILVNK 879

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E   E   N    +  D+   +V L   V++K+L K       A    HV++A +L+Q
Sbjct: 880  DVEGAKEYTRN----IIADLLRNKVDLSLLVVSKSLGKDDYTAKLA----HVELAKKLRQ 931

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                +  + GD V YII          S G  Q  R  D L   +    ID  +Y    +
Sbjct: 932  RDPGSAPNVGDRVSYIII-------RGSKGQPQYDRAEDPLYVLEKNLAIDTQHY----V 980

Query: 1262 HPVVSRLCASIEGT--SPERL 1280
              + + L    EG    PE+L
Sbjct: 981  DTIKASLIRIFEGVMKDPEKL 1001


>gi|169849845|ref|XP_001831621.1| delta DNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|116507259|gb|EAU90154.1| delta DNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1081

 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 189/686 (27%), Positives = 314/686 (45%), Gaps = 104/686 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  E  E  +L      + ++D D+++G+NISGFD   L+ RAQ  ++  + +  +
Sbjct: 340  GSQVLSFED-EGKMLQAWRDFVSEVDPDLVIGYNISGFDFPYLMDRAQALKL--TKFPYL 396

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT--FLCSRDLLREVSYSLTQL 745
            GR K  ++E+         +G   S    + + GRL  D   F+     LR  SYSL  +
Sbjct: 397  GRFKNIKTEVKNTHFSSRAYGQRDSKE--TTLDGRLQLDILQFMQREHKLR--SYSLNSV 452

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
                L + +++V  H V+   Q  T ES   L  Y   DA+L   LM  L       ++ 
Sbjct: 453  CAQFLGEQKEDVH-HSVITELQNGTPESRRRLAIYCLKDAYLPQRLMDKLMCFVNYAEMA 511

Query: 804  NISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
             ++G  +   L  AR Q ++ L  L     ++ Y++P               S  G  D 
Sbjct: 512  RVTGVPFNFLL--ARGQSIKVLSQLYRKANSEGYLIP---------------SMKGGGD- 553

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                   ED                    Y G  V+EPKKG YD  I  LDF+SLYPSI+
Sbjct: 554  ------GEDQ-------------------YEGATVIEPKKGYYDVPIATLDFSSLYPSIM 588

Query: 922  QEYNICFTTV-----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
              +N+C+TT+                  ++P+      P  +  G+LP +L++L+  R+ 
Sbjct: 589  MAHNLCYTTLLNKATIDRLSLVKDVDYVQTPNNDYFATPVRR-KGLLPTILEDLISARKR 647

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++ 
Sbjct: 648  AKADLKKETDPFKKAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRQMIE 707

Query: 1024 STVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+    +        EVIYGDTDS+M+  G  D+AK  A+  +    V + + + 
Sbjct: 708  RTKQEVEAEYTIANGHEHDAEVIYGDTDSVMVRFGPTDLAKVMALGAEAADLVTQHFARP 767

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD   L   V + CL
Sbjct: 768  IKLEFEKVYYPYLLISKKRYAGLYWTRADK--WDKMDSKGIETVRRDNCRLVSTVIETCL 825

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             ++L +R     V++  +   ++  D+   ++ + + VITK L+K  E Y  A  Q HV+
Sbjct: 826  HKMLIDRD----VKAAEDYTKRIISDLLQNKIDMSQLVITKALSK--EKY--AGKQAHVE 877

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A ++K     +  + GD V Y+I   +G  +      A   +  D L   +    ID  
Sbjct: 878  LAAKMKDRDAGSAPAVGDRVAYVIV--KGARNA-----AAYEKSEDPLWVLENNLPIDTR 930

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERL 1280
            YY   Q+   + R+   I G   + L
Sbjct: 931  YYLDNQLSKPLMRIFEPILGEKAQSL 956


>gi|302801963|ref|XP_002982737.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii]
 gi|300149327|gb|EFJ15982.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii]
          Length = 980

 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 200/808 (24%), Positives = 352/808 (43%), Gaps = 123/808 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F++   V G +W+ +   S    P+R+S C+ EI +   K +  S++ ++ +++ P  + 
Sbjct: 138  FMIDCNVGGGNWIELPGGSYRLTPRRLSTCQIEIDILYNKIVSHSATGQY-SKLAPFRIL 196

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            + +++                   C   K   P    E      +++   V+   G   P
Sbjct: 197  SFDIE-------------------CAGRKGHFP--EPEHDPVIQIANLVTVQ---GESRP 232

Query: 616  MGFNKEATDRNSK-AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            M  N       S   G +V+  ++ +  LL        KL  D+++G+NI  FD+  L+ 
Sbjct: 233  MVRNVMTLKSCSAIVGVDVMSFDTEKEVLL-----AWRKLTPDIIIGYNICKFDMPYLIE 287

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCS 731
            RAQ  ++    +  +GR++ S   ++R     F S   G        I GR+  D     
Sbjct: 288  RAQ--KLGIVEFPVLGRIRNS---RVRVRDATFSSRQYGIRESKEVLIEGRVQFDLLQAM 342

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMEL 789
            +   +  SYSL  ++   L + +++V  H ++   Q    E+   L  Y   DA+L   L
Sbjct: 343  QRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIIADLQNGNSETRRRLAVYCLKDAYLPQRL 401

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +  L  +    ++  ++G      L   ++ +V   +L   R + ++VP           
Sbjct: 402  LEKLMFIYNYIEMARVTGVPISFLLSRGQSIKVLSQILRKCRQRNFVVP----------- 450

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                                          N   +G     + G  VLE + G Y+K I 
Sbjct: 451  ------------------------------NIKGQGAGQETFEGATVLEARAGFYEKPIA 480

Query: 910  LLDFNSLYPSIIQEYNICFTTVERSPD----GLVPH----LPSSKT-------TGVLPEL 954
             LDF SLYPSI+  YN+C+ T+ R+ D     + P      PS +T        G+LPE+
Sbjct: 481  TLDFASLYPSIMMAYNLCYCTLVRTEDQARLNIAPENVNKTPSGETFVKTNMEKGILPEI 540

Query: 955  LKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L+ L+  R+  +  +K A+  L+   LD +Q ALK++ANS+YG  G +  +     ++  
Sbjct: 541  LEELLAARKRARADLKEATDSLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSS 600

Query: 1014 ITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            +T  GR+++  T  LV+   N         EVIYGDTDS+M+  G+  +  A  +  +  
Sbjct: 601  VTSYGRQMIEHTKTLVEGRFNTSNKYDNNAEVIYGDTDSVMVQFGVSTVEDAMNLGREAA 660

Query: 1066 QEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
              ++  + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  L
Sbjct: 661  DYISGTFTKPIKLEFEKVYFPYLLISKKRYAG--LLWTKPAKYDKMDTKGIETVRRDNCL 718

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L K V    L +IL +R     V+ +   +     D+   ++ L   VITK LTK  + Y
Sbjct: 719  LVKNVVTQSLHKILVDRDVPGAVDYVKGMI----SDLLMNRMDLSLLVITKGLTKTGDDY 774

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
              A    HV++A R+++   +T  + GD VPY+I         ++ G     R  D +  
Sbjct: 775  --AVKAAHVELAERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYV 825

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASI 1272
             +    ID  YY   Q+   + R+   I
Sbjct: 826  LENNIPIDPQYYLENQLSKPLLRIFEPI 853


>gi|302663472|ref|XP_003023378.1| Catalytic subunit of DNA polymerase delta [Trichophyton verrucosum
            HKI 0517]
 gi|291187372|gb|EFE42760.1| Catalytic subunit of DNA polymerase delta [Trichophyton verrucosum
            HKI 0517]
          Length = 1111

 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 207/818 (25%), Positives = 360/818 (44%), Gaps = 134/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K+   P  Q  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPAAKYEVLPPGQCQSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 312

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 313  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 355

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E  L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 356  VFVMD------TCSSIVNTQVLEFDKEENMLMAWRDFVE--KVDPDVIIGYNIANFDFPY 407

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    WS++  ++          +T F S   G      +   GR+  D 
Sbjct: 408  LLDRARYLNCLKFPYWSRLKGVQSHAT------KTSFASKQMGKRDSKATNTNGRIQLDL 461

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 462  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 519

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 520  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 574

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 575  ------------------------------LKNDDNSNQQ--------YEGATVIEPVRD 596

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PHLPSSKTT-- 948
             Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V P+     TT  
Sbjct: 597  YYPVPIATLDFASLYPSIIQAHNLCYTTLLSKRTVEKLGLKKGEDYIVTPNDDMFCTTKV 656

Query: 949  --GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 657  RKGLLSQILEELLTARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
               P+A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 717  PCLPIASSTTSYGRQMIEKTKDEVEARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEA 776

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++
Sbjct: 777  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAG--LYWTNPVKYDKMDTKGIE 834

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL +R+       + N    +  D+   +V + K VITK 
Sbjct: 835  TVRRDNCLLVQTVIETVLNKILIDRNVSGAETYVKN----IISDLLQNKVDMSKLVITKA 890

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK  E Y     Q HV++  R+++    +  + GD V Y+I        G + G     
Sbjct: 891  LTK--EEY--TGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV-------GGATGAKNYE 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 940  KSEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 977


>gi|429964510|gb|ELA46508.1| DNA polymerase (pol2) [Vavraia culicis 'floridensis']
          Length = 813

 Score =  193 bits (490), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 245/495 (49%), Gaps = 94/495 (18%)

Query: 716  MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
            +  I+G  + DTF C++ L+R  S+ L ++    L ++    G  +              
Sbjct: 201  LKSISGVWVIDTFECAKQLMRGRSFCLNEILGRNLLENSASDGYQNG------------- 247

Query: 776  IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
               G+  A  +   +  L VL L ++L  I+G+   +T+   RA+R EYLL+H+   KK+
Sbjct: 248  -NCGKKYAEDTFCALIKLGVLDLCKELCEITGHQLDRTIT-FRAERTEYLLMHSMYQKKW 305

Query: 836  IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
            ++             ++R                          N+H        Y GGL
Sbjct: 306  LI------------CRERKG------------------------NNH--------YTGGL 321

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------DGLVPHLPSSKTT 948
            VLEP+ GL++  I+L+DFNSLYPSII E N+CF+T+ R         DG      +++  
Sbjct: 322  VLEPRTGLFEN-IILIDFNSLYPSIIIEENLCFSTINRKARAGKENVDGACA--GNTEEM 378

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
             +LP +L  L+ RR+ +K  +           D +Q+ALK+TAN++YGCLG S  RF   
Sbjct: 379  ALLPAILSTLITRRKKLKQELVKKYS---STYDARQKALKITANAIYGCLG-STGRFSNL 434

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEV 1068
             +A  IT +GRE+L      ++  + L V+YGDTDS+MI S    + +  ++A K+   +
Sbjct: 435  EMAAFITGRGRELLMKAKSEIE-KIGLTVLYGDTDSLMIKSDC-SVEEIPSLAQKICASI 492

Query: 1069 NKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
            N  YK + I+++ +++R++L  KKKYA + V+       + I  KG++  RRD+ +LS  
Sbjct: 493  NNHYKFISIEMEDIFERIILYTKKKYAGITVK-------KEIILKGIE--RRDYCMLS-- 541

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG--QVALEKYVITKTLTKPPEAYPD 1186
                  +Q + +     +  S HN +MK   ++++       E +V+ + L K PE Y  
Sbjct: 542  ------NQFIYDVIWILLTSSDHNLVMKRLIELKTNLKTYGKENFVLERMLNKDPEKYTT 595

Query: 1187 AKNQPHVQVALRLKQ 1201
             +  P VQ+ALR+ +
Sbjct: 596  PEGSPQVQLALRINE 610


>gi|351727343|ref|NP_001238693.1| DNA polymerase delta catalytic subunit [Glycine max]
 gi|3913525|sp|O48901.1|DPOD1_SOYBN RecName: Full=DNA polymerase delta catalytic subunit
 gi|2895198|gb|AAC18443.1| DNA polymerase delta [Glycine max]
          Length = 1088

 Score =  193 bits (490), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 180/676 (26%), Positives = 307/676 (45%), Gaps = 97/676 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G +V+  E+ ER +L      + ++D D+++G+NI  FDL  L+ RA   ++  + +  
Sbjct: 325  VGVDVMPFET-EREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERALNLKI--AEFPI 381

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQ 744
            +GR++ S   ++R   T F S   G        + GR+  D   +  RD   ++S     
Sbjct: 382  LGRIRNS---RVRVKDTTFSSRQYGTRESKEVAVEGRVTFDLLQVMQRDY--KLSSYSLN 436

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
               +    ++KE   H ++   Q    E+   L  Y   DA+L   L+  L  +    ++
Sbjct: 437  SVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 496

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   ++ +V   LL   R K  ++P+          AKQ          
Sbjct: 497  ARVTGVPISFLLSRGQSIKVLSQLLRRARQKNLVIPN----------AKQ---------- 536

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                  G     + G  VLE + G Y+K I  LDF SLYPSI+ 
Sbjct: 537  ---------------------AGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMM 575

Query: 923  EYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
             YN+C+ T                V R+P G    + S+   G+LPE+L+ L+  R+  K
Sbjct: 576  AYNLCYCTLVIPEDARKLNIPPESVNRTPSGET-FVKSNLQKGILPEILEELLTARKRAK 634

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K A   L+   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T
Sbjct: 635  ADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHT 694

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
              LV++          N EVIYGDTDS+M+  G+  + +A  +  +  + ++  + K ++
Sbjct: 695  KKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIK 754

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD  LL K + + CL +
Sbjct: 755  LEFEKVYYPYLLISKKRYAGLFWTKPDN--FDKMDTKGIETVRRDNCLLVKNLVNDCLHK 812

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +R     V+ + N++     D+   ++ L   VITK LTK  + Y       HV++A
Sbjct: 813  ILIDRDIPGAVQYVKNAI----SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELA 866

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +T  + GD VPY+I         ++ G     R  D +   +    ID  YY
Sbjct: 867  ERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLENNIPIDPHYY 919

Query: 1257 ASQQIHPVVSRLCASI 1272
               QI   + R+   I
Sbjct: 920  LENQISKPILRIFEPI 935


>gi|334188613|ref|NP_001190611.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
 gi|332010439|gb|AED97822.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
          Length = 1112

 Score =  192 bits (489), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 195/756 (25%), Positives = 328/756 (43%), Gaps = 124/756 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---G 710
            +D D+++G+NI  FDL  L+ RA    +    +  +GR+K S   ++R   + F S   G
Sbjct: 401  VDPDIIIGYNICKFDLPYLIERAATLGIEE--FPLLGRVKNS---RVRVRDSTFSSRQQG 455

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-- 768
                  + I GR   D         +  SYSL  ++   L++ +++V  H ++   Q   
Sbjct: 456  IRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQKEDVH-HSIITDLQNGN 514

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--L 826
             E+   L  Y   DA+L   L+  L  +    ++  ++G      L  AR Q ++ L  L
Sbjct: 515  AETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLL--ARGQSIKVLSQL 572

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            L   + K  ++P+          AKQ                                G 
Sbjct: 573  LRKGKQKNLVLPN----------AKQ-------------------------------SGS 591

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSK 946
                Y G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    D    +LP   
Sbjct: 592  EQGTYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEH 651

Query: 947  TT---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
             T               G+LPE+L+ L+  R+  K  +K A   L+   LD +Q ALK++
Sbjct: 652  VTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKIS 711

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDT 1042
            ANS+YG  G +  +     ++  +T  GR+++  T  LV++          N EVIYGDT
Sbjct: 712  ANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDT 771

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            DS+M+  G+ D+  A  +  +  + ++  + K ++++ + +Y   LL+ KK+YA   + +
Sbjct: 772  DSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAG--LLW 829

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             +   ++ ++ KG++ VRRD  LL K +    L++IL +R      E++  ++     D+
Sbjct: 830  TNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTI----SDL 885

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
               ++ L   VITK LTK  + Y       H ++A R+++   +T  + GD VPY+I   
Sbjct: 886  LMNRIDLSLLVITKGLTKTGDDY--EVKSAHGELAERMRKRDAATAPNVGDRVPYVII-- 941

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
                  ++ G     R  D +        ID +YY   QI   + R+   +   + + L 
Sbjct: 942  -----KAAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLLRIFEPVLKNASKEL- 995

Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCS 1341
                L  S  +S    T    PS+S +     ++         LSC  C        +C+
Sbjct: 996  ----LHGSHTRSISITT----PSNSGIMKFAKKQ---------LSCVGCKVPISNGTLCA 1038

Query: 1342 S--------ICMSVSEKPSKPETEYNFWRTLRCPKC 1369
            S         C +VS+     E     W   +C +C
Sbjct: 1039 SCKGREAELYCKNVSQVAELEEVFGRLWT--QCQEC 1072


>gi|302803951|ref|XP_002983728.1| hypothetical protein SELMODRAFT_180322 [Selaginella moellendorffii]
 gi|300148565|gb|EFJ15224.1| hypothetical protein SELMODRAFT_180322 [Selaginella moellendorffii]
          Length = 984

 Score =  192 bits (489), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 200/809 (24%), Positives = 356/809 (44%), Gaps = 121/809 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F++   V G +W+ +   S    P+R+S C+ EI +   K +  S++ ++ +++ P  + 
Sbjct: 138  FMIDCNVGGGNWIELPGGSYRLTPRRLSTCQIEIDILYNKIVSHSATGQY-SKLAPFRIL 196

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            + +++                   C   K   P    E      +++   V+   G   P
Sbjct: 197  SFDIE-------------------CAGRKGHFP--EPEHDPVIQIANLVTVQ---GESRP 232

Query: 616  MGFNKEATDRNSK-AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLL 673
            M  N       S   G +V+  ++ +  LL  R +I   ++D D+++G+NI  FD+  L+
Sbjct: 233  MVRNVMTLKSCSAIVGVDVMSFDTEKEVLLAWRDLIR--EVDPDIIIGYNICKFDMPYLI 290

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLC 730
             RAQ  ++    +  +GR++ S   ++R     F S   G        I GR+  D    
Sbjct: 291  ERAQ--KLGIVEFPVLGRIRNS---RVRVRDATFSSRQYGIRESKEVLIEGRVQFDLLQA 345

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSME 788
             +   +  SYSL  ++   L + +++V  H ++   Q    E+   L  Y   DA+L   
Sbjct: 346  MQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIIADLQNGNSETRRRLAVYCLKDAYLPQR 404

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L  +    ++  ++G      L   ++ +V   +L   R + ++VP          
Sbjct: 405  LLEKLMFIYNYIEMARVTGVPISFLLSRGQSIKVLSQILRKCRQRNFVVP---------- 454

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                                           N   +G     + G  VLE + G Y+K I
Sbjct: 455  -------------------------------NIKGQGAGQETFEGATVLEARAGFYEKPI 483

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPD----GLVPH----LPSSKT-------TGVLPE 953
              LDF SLYPSI+  YN+C+ T+ R+ D     + P      PS +         G+LPE
Sbjct: 484  ATLDFASLYPSIMMAYNLCYCTLVRTEDQARLNIAPENVNKTPSGEMFVKTNMEKGILPE 543

Query: 954  LLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L+ L+  R+  +  +K A+  L+   LD +Q ALK++ANS+YG  G +  +     ++ 
Sbjct: 544  ILEELLAARKRARADLKEATDSLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISS 603

Query: 1013 LITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
             +T  GR+++  T  LV+   N         EVIYGDTDS+M+  G+  +  A  +  + 
Sbjct: 604  SVTSYGRQMIEHTKTLVEGRFNTSNKYDNNAEVIYGDTDSVMVQFGVSTVEDAMNLGREA 663

Query: 1065 IQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
               +++ + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  
Sbjct: 664  ADYISETFTKPIKLEFEKVYFPYLLISKKRYAG--LLWTKPAKYDKMDTKGIETVRRDNC 721

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
            LL K V    L +IL +R     V+ +   +     D+   ++ L   VITK LTK  + 
Sbjct: 722  LLVKNVVTQSLHKILVDRDVPGAVDFVKGMI----SDLLMNRMDLSLLVITKGLTKTGDD 777

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            Y  A    HV++A R+++   +T  + GD VPY+I         ++ G     R  D + 
Sbjct: 778  Y--AVKAAHVELAERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIY 828

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              +    ID  YY   Q+   + R+   I
Sbjct: 829  VLENNIPIDPQYYLENQLSKPLLRIFEPI 857


>gi|390596710|gb|EIN06111.1| delta DNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1052

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 187/678 (27%), Positives = 309/678 (45%), Gaps = 99/678 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  +  E  +L      + ++D DV++G+NIS FDL  L+ RA+  +  ++ +  
Sbjct: 310  VGSQVLSYDD-ESQMLQAWRDFVEQVDPDVVIGYNISNFDLPYLMDRAKALK--ANKFPF 366

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR++  R+++         +G   S    + + GRL  D     +   +  SY+L  + 
Sbjct: 367  LGRMRNVRTQVKDTHFSSKAYGQRDSKE--TAMEGRLQLDLLQVMQREQKLRSYTLNSVC 424

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q  T ES   L  Y   DA+L   LM  L  L    ++  
Sbjct: 425  AQFLGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLMDKLMYLVNYTEMAR 483

Query: 805  ISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            ++G  +   L  AR Q ++ L  L      + Y+VP                        
Sbjct: 484  VTGVPFNYLL--ARGQSIKVLSQLFRKANDEGYLVP------------------------ 517

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                      F  + S            Y G  V+EPKKG YD  I  LDF+SLYPSI+ 
Sbjct: 518  ---------VFKGEGSDEQ---------YEGATVIEPKKGYYDSPIATLDFSSLYPSIMM 559

Query: 923  EYNICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKNLVQRRRMVK 966
             +N+C+TT+  + + D L           P+    + S+K  G+LP +L++L+  R+  K
Sbjct: 560  AHNLCYTTLLDKATIDRLQLVKDVDYIQTPNNDFFVTSTKRKGLLPTILEDLISARKRAK 619

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K  S   K   LD +Q ALK++ANS+YG  G +  +     ++   T  GR+++  T
Sbjct: 620  ADLKKESDPFKRAVLDGRQLALKVSANSVYGFTGATIGKLPCLAISSSTTSYGRQMIEKT 679

Query: 1026 VDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+        ++ N EVIYGDTDS+M+  G  D+ +  A+  +  + V  K+ K ++
Sbjct: 680  KQEVEAEYCIANGHSHNAEVIYGDTDSVMVKFGPSDLKEVMALGSEAAEFVTTKFIKPIK 739

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V + CL +
Sbjct: 740  LEFEKVYFPYLLISKKRYAG--LYWTKPEKYDKMDSKGIETVRRDNCRLVSTVIETCLHK 797

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L +R  +   E     +     D+   +V + + VITK L K       A  Q HV++A
Sbjct: 798  MLIDRDVKGAEEYTKQMI----SDLLQNKVDMSQLVITKALAKADY----AAKQAHVELA 849

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+KQ    +  + GD V Y+I   +G       G A   +  D +   +    ID  YY
Sbjct: 850  ERMKQRDAGSAPALGDRVAYVIV--KGIK-----GAAAYEKSEDPIYVLENNIPIDTKYY 902

Query: 1257 ASQQIHPVVSRLCASIEG 1274
               Q+   + R+   I G
Sbjct: 903  LDNQLSKPLMRIFEPILG 920


>gi|327300054|ref|XP_003234720.1| DNA polymerase subunit delta large [Trichophyton rubrum CBS 118892]
 gi|326463614|gb|EGD89067.1| DNA polymerase subunit delta large [Trichophyton rubrum CBS 118892]
          Length = 1111

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 204/818 (24%), Positives = 357/818 (43%), Gaps = 134/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K+   P  Q  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPAAKYEVLPPGQCQSNCQIEASVHY-RDMTAHPNDGEWAKMAPL- 312

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 313  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 355

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E  L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 356  VFVMD------TCSSIVNTQVLEFDKEENMLMAWRDFVE--KVDPDVIIGYNIANFDFPY 407

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    WS++  ++          +T F S   G      +   GR+  D 
Sbjct: 408  LLDRARYLNCLKFPYWSRLKGVQSHAT------KTSFASKQMGKRDSKATNTNGRIQLDL 461

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 462  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 519

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 520  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 574

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 575  ------------------------------LKNDDNSNQQ--------YEGATVIEPVRD 596

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSK 946
             Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V         +  
Sbjct: 597  YYPVPIATLDFASLYPSIIQAHNLCYTTLLSKRTVEKLGLKKGEDYIVTPNDDMFCTAKV 656

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 657  RKGLLSQILEELLAARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
               P+A   T  GR+++  T + V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 717  PCLPIASSTTSYGRQMIEKTKEEVEARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEA 776

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++
Sbjct: 777  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAG--LYWTNPVKYDKMDTKGIE 834

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL ER+       + N    +  D+   +V + K VITK 
Sbjct: 835  TVRRDNCLLVQTVIETVLNKILIERNVSGAETYVKN----IISDLLQNKVDMSKLVITKA 890

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK  E Y     Q HV++  R+++    +  + GD V Y+I        G + G     
Sbjct: 891  LTK--EEY--TGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV-------GGATGAKNYE 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 940  KSEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 977


>gi|3122029|sp|P97283.1|DPOD1_MESAU RecName: Full=DNA polymerase delta catalytic subunit
 gi|1840089|gb|AAB47254.1| DNA polymerase delta catalytic subunit [Mesocricetus auratus]
          Length = 1103

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 177/655 (27%), Positives = 304/655 (46%), Gaps = 95/655 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +      + R +   
Sbjct: 381  ILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 437

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   
Sbjct: 438  GRRDSKVVSMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 493

Query: 767  QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R Q+V+ 
Sbjct: 494  QNGNEQTRRRLAVYCLRDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--SRGQQVKV 551

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +                     +++ +Q    G+    V+    ED              
Sbjct: 552  V---------------------SQLLRQAMRQGLLMPVVKTEGGED-------------- 576

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R          P
Sbjct: 577  ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 630

Query: 936  DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
            D  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q LD +Q ALK
Sbjct: 631  DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 690

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYG 1040
            ++ANS+YG  G    +     +++ +T  GR+++  T  LV++        N N +V+YG
Sbjct: 691  VSANSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYG 750

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ KK+YA +  
Sbjct: 751  DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 810

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    +    V  
Sbjct: 811  SSQPDT-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 865

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+I 
Sbjct: 866  DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 923

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                   G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLGQQLAKPLLRIFEPILG 971


>gi|47191078|emb|CAF94751.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 205

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 139/226 (61%), Gaps = 39/226 (17%)

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
            +TL G R++R E+LLLHAF  K YIVPDK ++    K A+     G E+  V        
Sbjct: 2    RTLMGGRSERNEFLLLHAFHEKNYIVPDKPSF----KKAQLDQAEGDEEVEVA------- 50

Query: 872  NFDNDTSHNDHRKGKR--GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                        KGKR    AYAGGLVL+PK G YDK++LLLDFNSLYPSIIQE+NICFT
Sbjct: 51   ------------KGKRRKKAAYAGGLVLDPKVGFYDKFVLLLDFNSLYPSIIQEFNICFT 98

Query: 930  TVERSPDGL-----------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTA--SGL 975
            TV+R                +P +P S    G+LP+ ++ LV+RR+ VK  MK    +  
Sbjct: 99   TVQREAQHSQKKNEDDEQEEIPEIPDSNLEPGILPKEIRKLVERRKQVKGLMKQQDINPD 158

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
               Q DI+Q+ALKLTANSMYGCLGFS SR YAKPLA L+T +GRE+
Sbjct: 159  VYLQYDIRQKALKLTANSMYGCLGFSYSRLYAKPLAALVTHKGREV 204


>gi|195377844|ref|XP_002047697.1| GJ11779 [Drosophila virilis]
 gi|194154855|gb|EDW70039.1| GJ11779 [Drosophila virilis]
          Length = 1092

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 187/684 (27%), Positives = 323/684 (47%), Gaps = 106/684 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +  E  LL++    + ++D D+L G+NI+ FD+  LL+RA   +V +  +  +
Sbjct: 353  GSQVLSYDQ-ETQLLDKWSAFVREVDPDILTGYNINNFDIPYLLNRAAHLKVKN--FEYL 409

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
            GR+K  RS + +        G   +  +     GR+  D FL    LLR+    SY+L  
Sbjct: 410  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLFLV---LLRDYKLRSYTLNA 464

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++
Sbjct: 465  VSYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLGKLMAIVNYMEM 523

Query: 803  TNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
              ++G      L   R Q+++ L  LL   + K +I+P   +Y                 
Sbjct: 524  ARVTGVPLESLL--TRGQQIKVLSQLLRKAKTKGFIMP---SYT---------------- 562

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                            +S +D +       Y G  V+EPK+G Y   I  LDF SLYPSI
Sbjct: 563  ----------------SSGSDEQ-------YEGATVIEPKRGYYADPISTLDFASLYPSI 599

Query: 921  IQEYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            +  +N+C+TT                VER+P   V  + +    G+LPE+L++L+  R+ 
Sbjct: 600  MMAHNLCYTTLLLPGTKDKMGLTDDQVERTPANNV-FVKAELRRGLLPEILESLLAARKR 658

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K  +   K Q LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++ 
Sbjct: 659  AKNDLKVETDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIE 718

Query: 1024 STVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T + V+++         +  VIYGDTDS+M++ G+  + ++  +  +    V+ K+ + 
Sbjct: 719  LTKNEVESHYTRANGYENDAVVIYGDTDSVMVNFGVKTLERSMELGREAADLVSSKFVRP 778

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL
Sbjct: 779  IKLEFEKVYYPYLLINKKRYAGLYFTKPDK--YDKMDCKGIETVRRDNSPLVANLMNACL 836

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             ++L ER  +  V+       +V  D+   ++ + + VITK L K       A  Q HV+
Sbjct: 837  QKLLIERDPDGAVDYAK----QVIADLLCNRIDISQLVITKELAKTDY----AAKQAHVE 888

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID +
Sbjct: 889  LAAKMKKRDAGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDAN 941

Query: 1255 YYASQQIHPVVSRLCASIEGTSPE 1278
            YY  QQ+   + R+   I G   E
Sbjct: 942  YYLEQQLSKPLLRIFEPILGDKAE 965


>gi|149056045|gb|EDM07476.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_c
            [Rattus norvegicus]
 gi|149056048|gb|EDM07479.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_c
            [Rattus norvegicus]
          Length = 1103

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 178/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 370  EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRD 429

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 430  SSFQSRQV---GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKE 483

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 484  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 542

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L  +R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 543  L--SRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 576

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 577  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + +S   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 620  PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+    LE 
Sbjct: 680  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 740  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 800  ISKKRYAGLLFSSRSDA-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 858

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 859  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 912

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            + GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 913  NLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 965

Query: 1269 CASIEG 1274
               I G
Sbjct: 966  FEPILG 971


>gi|336472726|gb|EGO60886.1| hypothetical protein NEUTE1DRAFT_120002 [Neurospora tetrasperma FGSC
            2508]
 gi|350294031|gb|EGZ75116.1| DNA polymerase delta catalytic subunit [Neurospora tetrasperma FGSC
            2509]
          Length = 1104

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 185/662 (27%), Positives = 308/662 (46%), Gaps = 107/662 (16%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L ++D D+++G+NI+ FD   LL RA+  +V     WS      R+ +  + K  T F S
Sbjct: 381  LEQVDPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWS------RTRVRSVAK-ETNFSS 433

Query: 710  ---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLK 764
               G      + I GRL  D   L  RD  LR  SY+L  +    L + +++V    + +
Sbjct: 434  KQMGNRDTKATNINGRLQLDMLQLVQRDYQLR--SYTLNSVCSHFLGEQKEDVHHSMITE 491

Query: 765  MFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
            +F+ T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V+
Sbjct: 492  LFEGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVK 549

Query: 824  YL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            +L  L      +K ++P                       N+   ++E+           
Sbjct: 550  FLSQLFRKALEQKLVIP-----------------------NLRPESSEEQ---------- 576

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-- 933
                     Y G  V+EP +G YD  I  LDF SLYPSI+Q +N+C+TT      +ER  
Sbjct: 577  ---------YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWD 627

Query: 934  ---------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
                     +P+G +  + + +  G+L ++L+ L+  R+  K  +       K   L+ +
Sbjct: 628  LKKDEDYIVTPNGDM-FVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVLNGR 686

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL-------- 1035
            Q ALK++ANS+YG  G +N +     +A  +T  GR+++  T   V+    +        
Sbjct: 687  QLALKVSANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDA 746

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKY 1094
            +VIYGDTDS+M+  G  D+A+A  +     + V+ K+ K ++++ + +Y   LL+ KK+Y
Sbjct: 747  QVIYGDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFVKPIKLEFEKVYFPYLLINKKRY 806

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A   + +     Y+ ++ KG++ VRRD  LL + V +  L  IL ++        + +++
Sbjct: 807  AG--LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAQAYVKDTI 864

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
                 D+   ++ + K VITK LTK  E Y DAK Q HV++A R+K+    +    GD V
Sbjct: 865  A----DLLQNKIDMSKLVITKALTK--ENY-DAK-QAHVELAQRMKKRDAGSAPGLGDRV 916

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y++          + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 917  AYVMV-------KGATGSKNFERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILG 969

Query: 1275 TS 1276
             +
Sbjct: 970  ET 971


>gi|62736742|gb|AAX97697.1| DNA polymerase [Sulfophobococcus zilligii]
          Length = 797

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 178/639 (27%), Positives = 297/639 (46%), Gaps = 126/639 (19%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            K D D+++G+N + FD   LL R +V  +   +  +IG L  +         + +G  + 
Sbjct: 234  KYDPDIILGYNSNSFDWPYLLERTRVLGIRFDIGRRIGALPTT---------STYGHISI 284

Query: 713  PGIMSCIAGRLLCDTFLCSRDL----LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            PG       RL  D +  + ++    L+ +      L   + N +R  +   +  K ++ 
Sbjct: 285  PG-------RLSVDLYNYAEEISEIKLKSLDVVAEYLGVMKRN-ERVLIDYTEFPKYWRD 336

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             E    L++Y E D   ++ L      LP   QL+ I+     +    +   R+E++L++
Sbjct: 337  PEKKKLLLKYNEDDVVSTLGLADKF--LPFAMQLSYITRIPLDQVGAASVGFRLEWVLMY 394

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                +  ++P++                  E+R VE                        
Sbjct: 395  EAYKRNELIPNR------------------EEREVE------------------------ 412

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT 948
              Y G +V +P  G+++  I +LDF S+YPSI+ +YN+        PD LV  L   +  
Sbjct: 413  -TYKGAVVFKPVPGIHED-IAVLDFTSMYPSIMIKYNV-------GPDTLVGELCEGEGY 463

Query: 949  GVLPEL---------------LKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTA 991
             + PE+               L  L+Q R+ ++  MK    +  + + LD +Q+A+K+ A
Sbjct: 464  NIAPEVGHCFRAEPPGFFKDVLVKLLQLRKSIREEMKKYPPTSYEYRLLDERQRAVKILA 523

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI 1051
            N+ YG +G++ +R+Y K  AE +T  GR+++R  VDL  +NL L+VIYGDTDS+ +    
Sbjct: 524  NATYGYMGWTGARWYCKACAEAVTAWGRQLIRKAVDLA-SNLGLKVIYGDTDSLFVTYNP 582

Query: 1052 DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVI 1110
            + I        K+  E+ ++    EI +D +YKR+   + KK+YA +    +DG     I
Sbjct: 583  EKI--------KIFIELVERELGFEIKVDKVYKRVFFTEAKKRYAGL---LEDGR----I 627

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            +  G + VR DW+ ++KEV +  +  +L E S +  VE +      V  ++  G++ LEK
Sbjct: 628  DIVGFEAVRGDWAEVAKEVQENIVEILLKEGSVDKAVEYVRT----VISNLMQGKIPLEK 683

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
             +I KTLTKP E Y      PHV+ A RL   G+      GD + Y++   +GT S    
Sbjct: 684  LIIWKTLTKPLEEY--EATAPHVKAARRLINQGFK--VEVGDKIGYVVL--KGTGS---- 733

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
             I+ RA +P  L K D K  ID +YY   QI P   R+ 
Sbjct: 734  -ISDRA-YPYILVK-DPK-TIDYNYYIDHQIIPATLRIL 768


>gi|66511388|ref|XP_623795.1| PREDICTED: DNA polymerase delta catalytic subunit [Apis mellifera]
          Length = 1105

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 180/682 (26%), Positives = 306/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E+ E  +L +    + +LD D+  G+NI+ FD   L++RA    V    +  
Sbjct: 365  VGCQVLSFET-EHKMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRANHLNVRDFYF-- 421

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +S +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 422  LGRIKNIKSVIKTQVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 479

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 480  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 538

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                        V 
Sbjct: 539  VTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMP------------------------VH 574

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
             +   D  F+                  G  V+EPK+G Y+  I  LDF+SLYPSII  +
Sbjct: 575  RVQASDEQFE------------------GATVIEPKRGYYNDPIATLDFSSLYPSIIMAH 616

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +       ++ S   T               G+LPE+L+NL+  R+  K  +
Sbjct: 617  NLCYTTLIKYDKQAKNNIQSDNITITPNDSKFVKVNIRKGILPEILENLLSARKAAKAEL 676

Query: 970  KTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 677  KKETDSLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRNMIEQTKQE 736

Query: 1029 VQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+           N  V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 737  VEEQYCISKGYKNNAMVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 796

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 797  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 854

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + VITK LTK       A  Q HV++A ++
Sbjct: 855  DRNPSDAM----NYAKQIISDLLCNRIDISQLVITKELTKTDY----AAKQAHVELAAKM 906

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  +   +    ID +YY  
Sbjct: 907  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDP--IYVLENNIPIDTNYYLE 958

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 959  NQLAKPLVRIFEPILGEKAESL 980


>gi|149056044|gb|EDM07475.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_b
            [Rattus norvegicus]
          Length = 1099

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 178/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 370  EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRD 429

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 430  SSFQSRQV---GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKE 483

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 484  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 542

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L  +R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 543  L--SRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 576

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 577  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619

Query: 934  ---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + +S   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 620  PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+    LE 
Sbjct: 680  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 740  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 800  ISKKRYAGLLFSSRSDA-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 858

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 859  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 912

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            + GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 913  NLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 965

Query: 1269 CASIEG 1274
               I G
Sbjct: 966  FEPILG 971


>gi|336368221|gb|EGN96564.1| hypothetical protein SERLA73DRAFT_58496 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1084

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 250/987 (25%), Positives = 423/987 (42%), Gaps = 190/987 (19%)

Query: 347  SGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVY-AIPNGPLFQTDEIMKLEKDAEESR 405
            +GA M  L +FG  +AG   HS    V +     Y A+P G  FQ D       D E+ R
Sbjct: 97   TGAVM--LRMFGVTEAG---HSVLAYVTDFLPYFYIAVPRG--FQND-------DKEDFR 142

Query: 406  ISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKIN 465
                                I   L    V N  +  V+RR  +G      G+++V  + 
Sbjct: 143  ------------------NHINTSLGGSFVVN--IESVQRRNLWGYR----GDDWVAFLK 178

Query: 466  YPFKDPPLPADLK------GE-NFCSL--LGTHSSALE-------LFLVKRKVKGPSWLS 509
                DP     ++      GE +F SL  +G   S  E        F++  KV G +W+ 
Sbjct: 179  LTICDPKTLPKVRDKYISQGECHFQSLFPIGQAVSTFESNIPYALRFMIDTKVVGMNWIE 238

Query: 510  I--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTV 562
            I   K+   P  ++ S C+ E+ V     I  +   K  ++V P+ + + ++     K +
Sbjct: 239  IPAGKYKIMPDKEKHSQCQVELRVRYDHFISHAPEGKW-SKVAPLRILSFDIECAGRKGI 297

Query: 563  FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA 622
            F + Q ++ ++  + +   +             +P + + FT+                 
Sbjct: 298  FPEPQ-MDPVIQIANMVTRQGD----------SQPFIRNIFTL----------------- 329

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
               +   GS VL  +  E A+L      + + D DV++G+NIS FD   LL RA+   + 
Sbjct: 330  NSCSHIVGSQVLSFKD-EGAMLQAWRDFIEEADPDVVIGYNISNFDFPYLLDRAK--HLK 386

Query: 683  SSMWSKIGRLKR--SEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT--FLCSRDLL 735
            ++ +  +GR+K   S++  L    T F S   G      + + GRL  D   F+     L
Sbjct: 387  AAKFPYLGRIKSMFSQLLALFVKDTHFSSKAYGQRDSKETVLDGRLQLDILQFMQREHKL 446

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHL 793
            R  SY+L  +    L + +++V  H V+   Q  T ES   L  Y   DA+L   L+  L
Sbjct: 447  R--SYTLNSVCAQFLGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLLDKL 503

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
                   +++ ++G  +   L   ++ +V   L      + Y+VP               
Sbjct: 504  MCFVNYIEMSRVTGVPFNFLLSRGQSIKVLSQLFRKANEEGYVVPALL------------ 551

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
               G +++                             Y G  V+EPKKG YD  I  LDF
Sbjct: 552  KGEGTDEQ-----------------------------YEGATVIEPKKGYYDSPIATLDF 582

Query: 914  NSLYPSIIQEYNICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKN 957
            +SLYPSI+  +N+C+TT+  + + D L           P+      +S+  G+LP +L++
Sbjct: 583  SSLYPSIMMAHNLCYTTLLDKTTIDRLQLVKDVDYIQTPNNDFFATTSRRKGLLPTVLED 642

Query: 958  LVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T 
Sbjct: 643  LISARKRAKADLKKETDPFKCAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTS 702

Query: 1017 QGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEV 1068
             GR+++  T   V+        ++ N EVIYGDTDS+M+  G  ++ K  A+  +    V
Sbjct: 703  YGRQMIEKTKQEVEAEYCVANGHDHNAEVIYGDTDSVMVKFGPAELTKVMALGIEAADLV 762

Query: 1069 NKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSK 1127
              ++ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L  
Sbjct: 763  TARFVKPIKLEFEKVYFPYLLISKKRYAG--LYWTKPEKYDKMDSKGIETVRRDNCRLVS 820

Query: 1128 EVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDA 1187
             V + CL ++L +R     V+   +   +V  D+   +V + + VITK L+K       +
Sbjct: 821  TVIETCLHKMLIDRD----VKGAEDYTKRVISDLLQNKVDMSQLVITKALSKAEY----S 872

Query: 1188 KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG 1247
              Q HV++A R+KQ    +  + GD V Y+I   +G       G A   +  D L   + 
Sbjct: 873  GKQAHVELAGRMKQRDAGSAPALGDRVAYVIV--KGMK-----GAAAYEKSEDPLYVLEN 925

Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEG 1274
               ID  YY   Q+   + R+   I G
Sbjct: 926  NIPIDTKYYLDNQLSKPLMRIFEPILG 952


>gi|20089769|ref|NP_615844.1| DNA-directed DNA polymerase [Methanosarcina acetivorans C2A]
 gi|19914708|gb|AAM04324.1| DNA-directed DNA polymerase [Methanosarcina acetivorans C2A]
          Length = 937

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 186/701 (26%), Positives = 319/701 (45%), Gaps = 142/701 (20%)

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ------------VC 679
            +VL C   E  +LN+    + + D D++ G+N   FD+  +  R +            V 
Sbjct: 246  DVLSC-MDETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITERVKALVAKGETINSVVG 304

Query: 680  RVPSSM-WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV 738
            R  S + + K G + R+EM                       GR++ D     R      
Sbjct: 305  RDGSPIGYRKFGLITRTEM----------------------KGRVVVDALPLVRRAFSLK 342

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLP 797
             Y+L  ++K  L++++ +V P ++ + +  + +   + ++Y   D+ L++EL+  L +L 
Sbjct: 343  QYTLRAVSKELLSREKLDVPPLEMEEHWNDSGDKFRKFVDYARRDSELALELVLELRLLD 402

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
                L  +SG+L  + + G +   VE LLL  F                          G
Sbjct: 403  KYIALAQVSGSLLQEIVDGGQTSMVETLLLREF--------------------------G 436

Query: 858  VEDRNV-----EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
            ++DR +     +EL+ E  +  +D                GG VLEPKKGL +  +L+LD
Sbjct: 437  LKDRVILPKPGDELSAERYDMSSDLK--------------GGEVLEPKKGLLEN-VLILD 481

Query: 913  FNSLYPSIIQEYNICFTTV--ERSPDG--LVP-----HLPSSKTTGVLPELLKNLVQRRR 963
            + SLYP+I+  +N+C+TTV     PDG  + P      +P     G++P +L++L+ +R 
Sbjct: 482  YKSLYPTIMMAHNLCYTTVVTRDRPDGKTIKPPSGGEFVPPEVFRGIVPSILEDLLNKRG 541

Query: 964  MVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  MK  S     + LD  Q A+K+  NS YG  G++ +R Y+  LA  +T  GR  +
Sbjct: 542  DTKKRMKRTSDENEHRVLDATQLAIKILLNSFYGYSGYARARLYSLTLANAVTSFGRSNI 601

Query: 1023 RSTVDLVQNNLN--------------------------LEVIYGDTDSIMIH---SGIDD 1053
             +T DL+   +                           L V YGDTDS+ +H    G   
Sbjct: 602  LNTRDLINGRIGKIVLRNSAALLLEEAGKLSPQDRIVELSVAYGDTDSVFVHCKAKGDLS 661

Query: 1054 IAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER 1112
            + +   +  ++ + V+      +E++ + + KR LL+ KK+YA    + ++      I+ 
Sbjct: 662  LEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALLIAKKRYALWLFEPRNSGWENKIKV 721

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA--LEK 1170
            KG++ VRRDW  L+    +  L  +L E   +  VE +   +  V+ ++  G+ A  +EK
Sbjct: 722  KGMETVRRDWCELTSITLNRVLEFVLIEGDVDKAVEHVRKVVSDVR-NLDPGKDAGIIEK 780

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC--SAGDTVPYIICCEQGTSSGS 1228
             V+T+TLT+  ++Y +   QPH+ VA  LK+    TG   S G  +P++I   +G     
Sbjct: 781  LVLTRTLTRKADSYKN--KQPHLTVAENLKK---RTGIMPSIGTRIPFVITAGKGL---- 831

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                  RA  PD +++ +    ID+DYY  +QI P V R+ 
Sbjct: 832  ---FVDRAEDPDYVRENNVP--IDVDYYVKKQILPPVERIL 867


>gi|410982334|ref|XP_003997512.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 1 [Felis
            catus]
          Length = 1111

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 183/667 (27%), Positives = 301/667 (45%), Gaps = 97/667 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V S  +  +GR+       
Sbjct: 374  EEELLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVES--FPFLGRVSGLRSTI 431

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKE 756
                     +G     +  + GR+  D     + LLRE    SY+L  ++   L + +++
Sbjct: 432  RDSSFQSKQTGRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKED 488

Query: 757  VGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L
Sbjct: 489  VQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL 547

Query: 815  -QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
             +G + + V  LL  A R              E  +       GVED             
Sbjct: 548  TRGQQVKVVSQLLRQAMR--------------EGLLMPVVKTEGVED------------- 580

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 581  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 623

Query: 934  ----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLK 976
                            +P G    + +S   G+LP++L+NL+  R+  K  + K    L+
Sbjct: 624  PGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLR 682

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
             Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E
Sbjct: 683  RQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 742

Query: 1037 --------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                    V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   L
Sbjct: 743  NGYGTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYL 802

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V
Sbjct: 803  LISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAV 861

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
                +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    + 
Sbjct: 862  AHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSA 915

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R
Sbjct: 916  PSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLR 968

Query: 1268 LCASIEG 1274
            +   I G
Sbjct: 969  IFEPILG 975


>gi|322801992|gb|EFZ22529.1| hypothetical protein SINV_03834 [Solenopsis invicta]
          Length = 1072

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 178/681 (26%), Positives = 304/681 (44%), Gaps = 94/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL   ++E  +L +    + + D D+  G+NI+ FD   L++RAQ   V +  ++ 
Sbjct: 332  VGSQVLSF-NTESLMLEKWADFVRQSDPDIFTGYNINNFDFPYLINRAQHLNVKN--FNF 388

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +S +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 389  LGRIKNIKSVIKDHVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 446

Query: 747  KTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
               L + +++V   D+  +     ++   L  Y   DA+L + L+  L  + +  ++  +
Sbjct: 447  YHFLQEQKEDVQHKDITGLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMARV 506

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G      L   +  +V   LL   + K Y++P                 HG +++    
Sbjct: 507  TGVSISSLLTRGQQIKVVSQLLRKTKEKDYLMP-------------VHQGHGTDEQ---- 549

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     + G  V+EPK+G Y+  I  LDF+SLYPSII  +N
Sbjct: 550  -------------------------FEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHN 584

Query: 926  ICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            +C+TT                +  +P   +  + S+   G+LPE+L+NL+  R+  K  +
Sbjct: 585  LCYTTLLTVAKKKELNIQEDQITTTPSNSL-FIKSTIRKGILPEILENLLSARKKAKAEL 643

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 644  KQETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIERTKQE 703

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+N+  +E        VIYGDTDS+M+  G+  I  A  +  +    V  K+ K ++++ 
Sbjct: 704  VENHFRIENGYKNDAMVIYGDTDSVMVKFGVKAIEDAMVLGKEAADYVTSKFIKPIKLEF 763

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL  +L 
Sbjct: 764  EKVYFPYLLINKKRYAGLYFTKPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQILLI 821

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER+    ++       +V  D+   ++ L + VITK LTK       A  Q HV++A ++
Sbjct: 822  ERNPHSAIDYAK----QVISDLLCNRIDLSQLVITKELTKTDY----AAKQAHVELAAKM 873

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+         GD V Y+      TS+       Q+A  P  +        ID +YY   
Sbjct: 874  KKRDAGNAPKLGDRVAYVF-----TSAAKGTPAYQKAEDP--VYALQNSIPIDTNYYLEN 926

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + R+   I G   E L
Sbjct: 927  QLAKPLVRIFEPILGEKAESL 947


>gi|222615647|gb|EEE51779.1| hypothetical protein OsJ_33228 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 177/677 (26%), Positives = 299/677 (44%), Gaps = 105/677 (15%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +ER +L      + ++D D+++G+NI  FDL  L+ RA+V ++    +  +GR++ S   
Sbjct: 359  TERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVE--FPILGRIRNS--- 413

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            ++R   T F S   G        + GR+  D     +   +  SYSL  ++   L + ++
Sbjct: 414  RVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKE 473

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGET-------------DAWLSMELMFHLSVLPLTR 800
            +V  H ++   Q    E+   L  Y                DA+L   L+  L  +    
Sbjct: 474  DVH-HSIISDLQNGNSETRRRLAVYCLKVGLLDCQWLRYLPDAYLPQRLLDKLMYIYNYV 532

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            ++  ++G      L   ++ +V   LL   + K  ++P                      
Sbjct: 533  EMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIP---------------------- 570

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                       N     S  D         + G  VLE + G Y+K I  LDF SLYPSI
Sbjct: 571  -----------NIKGQASGQD--------TFEGATVLEARAGFYEKPIATLDFASLYPSI 611

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMV 965
            +  YN+C+ T+    D    +LP                    G+LPE+L+ L+  R+  
Sbjct: 612  MMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRA 671

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K A    +   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  
Sbjct: 672  KADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEH 731

Query: 1025 TVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T  LV++          N EVIYGDTDS+M+  G+  +  A  +  +    ++  + K +
Sbjct: 732  TKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPI 791

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD  LL K +   CL 
Sbjct: 792  KLEFEKIYFPYLLISKKRYAG--LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLH 849

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            +IL +R     V+ + N++     D+   +V L   VITK LTK  E Y  A    HV++
Sbjct: 850  KILVDRDVPGAVQYVKNTI----SDLLMNRVDLSLLVITKGLTKTGEDY--AVKAAHVEL 903

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+++   +T  + GD VPY+I         ++ G     R  D +   D    ID  Y
Sbjct: 904  AERMRKRDAATAPTVGDRVPYVII-------KAAKGAKAYERSEDPIYVLDNNIPIDPQY 956

Query: 1256 YASQQIHPVVSRLCASI 1272
            Y   QI   + R+   I
Sbjct: 957  YLENQISKPLLRIFEPI 973


>gi|302497097|ref|XP_003010549.1| Catalytic subunit of DNA polymerase delta [Arthroderma benhamiae CBS
            112371]
 gi|291174092|gb|EFE29909.1| Catalytic subunit of DNA polymerase delta [Arthroderma benhamiae CBS
            112371]
          Length = 1111

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 204/818 (24%), Positives = 357/818 (43%), Gaps = 134/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K+   P  Q  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPAAKYEVLPPGQCQSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 312

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 313  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 355

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E  L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 356  VFVMD------TCSSIVNTQVLEFDKEENMLMAWRDFVE--KVDPDVIIGYNIANFDFPY 407

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    WS++  ++          +T F S   G      +   GR+  D 
Sbjct: 408  LLDRARYLNCLKFPYWSRLKGVQSHAT------KTSFASKQMGKRDSKATNTNGRIQLDL 461

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 462  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 519

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 520  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 574

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 575  ------------------------------LKNDDNSNQQ--------YEGATVIEPVRD 596

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSK 946
             Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V         +  
Sbjct: 597  YYPVPIATLDFASLYPSIIQAHNLCYTTLLSKRTVEKLGLKKGEDYIVTPNDDMFCTAKI 656

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 657  RKGLLSQILEELLTARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
               P+A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 717  PCLPIASSTTSYGRQMIEKTKDEVEARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEA 776

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++
Sbjct: 777  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAG--LYWTNPVKYDKMDTKGIE 834

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL +R+       + N    +  D+   +V + K VITK 
Sbjct: 835  TVRRDNCLLVQTVIETVLNKILIDRNVSGAETYVKN----IISDLLQNKVDMSKLVITKA 890

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK  E Y     Q HV++  R+++    +  + GD V Y+I        G + G     
Sbjct: 891  LTK--EEY--TGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV-------GGATGAKNYE 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 940  KSEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 977


>gi|288931848|ref|YP_003435908.1| DNA polymerase Pol2 [Ferroglobus placidus DSM 10642]
 gi|288894096|gb|ADC65633.1| DNA polymerase Pol2 [Ferroglobus placidus DSM 10642]
          Length = 785

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 192/679 (28%), Positives = 308/679 (45%), Gaps = 135/679 (19%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
             +ER +L R +  + + D DV+VG+N   FD   +  RA+   V  +    IGR      
Sbjct: 202  GNEREILLRFVEIIKEQDPDVIVGYNQDNFDWPYIRKRAEKLSVKLN----IGR------ 251

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNK-DRKE 756
                 G  I   G  P I    AGRL  D +  +  L  +V  +L  +A+    K +  +
Sbjct: 252  ----DGSEISFRGGRPKI----AGRLNVDLYDIAMKLDVKVK-TLENVAEFLGRKVELAD 302

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   D+ K + + +    +++Y + D   +  +   L  LP+  +L+ +         + 
Sbjct: 303  IEAKDIYKRWTSGDK-ESVLKYSKQDVLNTYFIAEEL--LPMHYELSRMIRIPTDDVARI 359

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
             R ++V++ LL        I P+                       VEE           
Sbjct: 360  GRGKQVDWFLLSEAYKIGEIAPNP--------------------AEVEE----------- 388

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI---------- 926
                         +Y G  VLEP +GL+ K ++ LDF S+YPSI+  YNI          
Sbjct: 389  -------------SYEGAFVLEPSRGLH-KNVVCLDFASMYPSIMIAYNISPDTYVFGKC 434

Query: 927  --CFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
              C+   E      V H       G    +LK L+++RR +K  MK+   +  +   L+I
Sbjct: 435  DDCYVAPE------VGHKFRKHPDGFFKRILKMLIEKRREIKNQMKSLDRNSREYLLLNI 488

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +QQ LK+  NS YG  G+S +R+Y +  AE  T  GR +++S V++ +  L  EV+YGDT
Sbjct: 489  KQQTLKILTNSFYGYTGWSGARWYCRQCAEATTAWGRHLIKSAVEIAK-KLGFEVLYGDT 547

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            DSI +  G   + K +    K+I+E+++K+  ++I++D  YK +  ++KK+YA +    +
Sbjct: 548  DSIFVKKGNLSLEKIRGEVEKLIEEISEKFP-VQIEVDEYYKTIFFVEKKRYAGLT---E 603

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG    ++  KGL++ R DW  L+KEV    +  IL E + E   E +     KV  D++
Sbjct: 604  DG----ILVVKGLEVRRGDWCELAKEVQKKVIEIILKEENPEKAAEYVR----KVINDIK 655

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG--YSTGCSAGDTVPYIICC 1220
            SG+V LE  VI K LTK P+ Y     Q HV+ ALR  + G  Y+ G   G  V      
Sbjct: 656  SGKVKLEDVVIYKGLTKRPDKY--ESKQAHVKAALRAMELGIVYNVGSKVGFVV------ 707

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMI------------DIDYYASQQIHPVVSRL 1268
                    +VG   RA   D +++ DG+ ++            D DYY + QI P V R+
Sbjct: 708  ---VEGAGNVG--DRAYPIDLIEEFDGENLVIRTRSGSIVKKLDKDYYINHQIIPSVLRI 762

Query: 1269 C-------ASIEGTSPERL 1280
                    AS++G + + L
Sbjct: 763  LERFGYNEASLKGATQKTL 781


>gi|388852680|emb|CCF53598.1| probable DNA polymerase delta catalytic subunit [Ustilago hordei]
          Length = 1057

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 179/652 (27%), Positives = 297/652 (45%), Gaps = 94/652 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSG 710
            ++D DV++G+NI+ FD   LL RA+  +  S+ ++ +GR +  R+E          +G+ 
Sbjct: 343  EVDPDVIIGYNIANFDFPYLLDRAKALK--STKFAYLGRERGVRTEAKDTHFSSKAYGTR 400

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL- 769
             S    + + GRL  D     +   +  SYSL  ++   L + +++V  H ++   Q   
Sbjct: 401  DSKN--TELQGRLQLDMLQVMQRDYKLRSYSLNSVSFEFLGEQKEDVH-HSLITELQNAG 457

Query: 770  -ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             ES   L  Y   DA+L   LM  L       ++  ++G  +   L   +  +V   L  
Sbjct: 458  PESRRRLAVYCLKDAYLPQRLMDKLMCFVNYIEMARVTGVPFNYLLSRGQQIKVVSQLFR 517

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                 KY+VP    Y  E          G ED+                           
Sbjct: 518  KANEDKYLVP---AYKGE----------GTEDQ--------------------------- 537

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDGL-------- 938
              Y G  VLEPK G YD+ I  LDF SLYPS++  +N+C+TT+  +++ D L        
Sbjct: 538  --YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLLDKKTIDRLELKENDDF 595

Query: 939  --VP---HLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
               P   +  + K   G+LP +L+NL+  R+  K  +K  +   +   LD +Q ALK++A
Sbjct: 596  VITPNNNYFATKKLRKGLLPTVLENLLAARKRAKADLKKETDPFRRAVLDGRQLALKISA 655

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTD 1043
            NS+YG  G +  +     ++   T  GR+++  T   V+ +  +        EV+YGDTD
Sbjct: 656  NSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVEKHYTIANGYEHDAEVVYGDTD 715

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+MI  G  D+AKA  +  +    V+K +   ++++ + +Y   LL+ KK+YA   + + 
Sbjct: 716  SVMIKFGPPDLAKAMKLGAEAAGLVSKTFIDPIKLEFEKVYFPYLLISKKRYAG--LYWT 773

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                Y+ ++ KG++ VRRD   L + V D CL ++L +R  +   E   N    +  D+ 
Sbjct: 774  RPEKYDKMDTKGIETVRRDNCRLVQTVIDTCLRKMLIDRDVKGAEEYAKN----IISDLL 829

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              +V + + VITK L K       A  Q HV++A R+++    +  + GD V Y+I    
Sbjct: 830  QNKVDMSQLVITKALAKSDY----AAKQAHVELAERMRKRDAGSAPALGDRVAYVIV--- 882

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 ++ G A   R  D +   D    ID  YY   Q+   + R+   I G
Sbjct: 883  ----KAAKGAAAYERSEDPIYVLDHNIPIDTRYYLENQLAKPLLRIFEPIMG 930


>gi|296477407|tpg|DAA19522.1| TPA: DNA polymerase delta catalytic subunit [Bos taurus]
          Length = 987

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 180/659 (27%), Positives = 303/659 (45%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +VP   +  +GR       ++ S     + GR  
Sbjct: 387  MDPDVITGYNIQNFDLPYLISRAQTLKVPG--FPLLGRVIGLRSNIRESSFQSRQTGRR- 443

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 444  -----DSKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 493

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R Q+
Sbjct: 494  TDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL--SRGQQ 551

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q    G+    V+    ED           
Sbjct: 552  VKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED----------- 579

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R        
Sbjct: 580  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 630

Query: 934  --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                    +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 631  LTEDQFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 689

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    R     +++ +T  GR+++  T  LV+    +E        
Sbjct: 690  LALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAK 749

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 750  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 809

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V    +   
Sbjct: 810  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQD--- 865

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 866  -VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 922

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 923  YVIIS-------AAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 974


>gi|27806073|ref|NP_776852.1| DNA polymerase delta catalytic subunit [Bos taurus]
 gi|118838|sp|P28339.1|DPOD1_BOVIN RecName: Full=DNA polymerase delta catalytic subunit
 gi|162974|gb|AAA30493.1| DNA polymerase-delta catalytic-subunit [Bos taurus]
          Length = 1106

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 180/659 (27%), Positives = 303/659 (45%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +VP   +  +GR       ++ S     + GR  
Sbjct: 387  MDPDVITGYNIQNFDLPYLISRAQTLKVPG--FPLLGRVIGLRSNIRESSFQSRQTGRR- 443

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 444  -----DSKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 493

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R Q+
Sbjct: 494  TDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL--SRGQQ 551

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q    G+    V+    ED           
Sbjct: 552  VKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED----------- 579

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R        
Sbjct: 580  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 630

Query: 934  --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                    +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 631  LTEDQFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 689

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    R     +++ +T  GR+++  T  LV+    +E        
Sbjct: 690  LALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAK 749

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 750  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 809

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V    +   
Sbjct: 810  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQD--- 865

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 866  -VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 922

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 923  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 974


>gi|410982336|ref|XP_003997513.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 2 [Felis
            catus]
          Length = 1109

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 183/667 (27%), Positives = 301/667 (45%), Gaps = 97/667 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V S  +  +GR+       
Sbjct: 372  EEELLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVES--FPFLGRVSGLRSTI 429

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKE 756
                     +G     +  + GR+  D     + LLRE    SY+L  ++   L + +++
Sbjct: 430  RDSSFQSKQTGRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKED 486

Query: 757  VGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L
Sbjct: 487  VQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL 545

Query: 815  -QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
             +G + + V  LL  A R              E  +       GVED             
Sbjct: 546  TRGQQVKVVSQLLRQAMR--------------EGLLMPVVKTEGVED------------- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  ----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLK 976
                            +P G    + +S   G+LP++L+NL+  R+  K  + K    L+
Sbjct: 622  PGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLR 680

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
             Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E
Sbjct: 681  RQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 740

Query: 1037 --------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                    V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   L
Sbjct: 741  NGYGTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYL 800

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V
Sbjct: 801  LISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAV 859

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
                +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    + 
Sbjct: 860  AHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSA 913

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R
Sbjct: 914  PSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLR 966

Query: 1268 LCASIEG 1274
            +   I G
Sbjct: 967  IFEPILG 973


>gi|324120750|dbj|BAJ78766.1| DNA polymerase delta catalytic subunit [Protohermes grandis]
          Length = 1046

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 180/671 (26%), Positives = 300/671 (44%), Gaps = 93/671 (13%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LLN  +  ++ +D D + G+NI+ FDL  ++ RA+   +     S +GRLK   +P 
Sbjct: 314  ETDLLNAWVKFIHDVDPDFVTGYNINNFDLPYIIDRAK--HLKQQKCSFLGRLK--SVPS 369

Query: 700  LRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
              K +T         I   +   GRL  D FL  +  L   SY+L   A   L + +++V
Sbjct: 370  TVKVKTNQSKAMGKRIEKSVNMQGRLAYDMFLVVKRTLSLRSYTLNNSALQVLGEQKEDV 429

Query: 758  GPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-Q 815
                +  +      +   L  Y   DA L + +M  L+ L    +L  +SG      L +
Sbjct: 430  HFSQITGLQNGDQHTRHRLAVYCIKDAMLPLRIMDRLNSLTNDMELARVSGVTITTLLTR 489

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            G + + V  LL HA R   Y++P       E +                           
Sbjct: 490  GEQVKVVTQLLSHA-RHAGYLMPVHHVQASEEQ--------------------------- 521

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT----- 930
                           Y G  V+EPKK  Y   I  LDF+SLYPSI+  +N+C+TT     
Sbjct: 522  ---------------YEGATVIEPKKDYYTLPIATLDFSSLYPSIMMAHNLCYTTLVQPY 566

Query: 931  -----------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQ 978
                       + ++P G    + SS   G+LPE+L+NL++ R+  K  +   +   K  
Sbjct: 567  IIDKLGLKEEDITKTPKGNY-FVKSSVRCGLLPEILENLLKARKRAKNELAAETDPSKKA 625

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--- 1035
             L+ +Q ALK++ANS+YG  G    +     ++  +T  GRE++  T   V+    L   
Sbjct: 626  VLNGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTSYGREMIELTRKEVEERFTLKNG 685

Query: 1036 -----EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLL 1089
                 +V+YGDTDS+M+  G+++IA++  +  +  + V+ K+ K ++++ + +Y   LL+
Sbjct: 686  YLHDAQVVYGDTDSVMVKFGVEEIAESMKLGREAAEFVSAKFIKPIKLEFEKVYCPYLLI 745

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KK+YA +     D   Y+ ++ KGL+ VRRD S L     + CL ++L  +  E  ++ 
Sbjct: 746  NKKRYAGLYYTRPDK--YDKMDCKGLETVRRDNSPLVANTINICLQKLLIHKDPEGAIKY 803

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
                  +V  D+   ++ + + VI+K LTK   AY  A  Q HV++A +L +        
Sbjct: 804  TK----QVISDLLCNRIDISQLVISKELTKGEGAY--AAKQAHVELAKKLTKRDPGNAPK 857

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
             GD VPY++         ++      A+  D +   +    ID  YY   Q+   + R+ 
Sbjct: 858  MGDRVPYVLI-------AATKNTPAYAKAEDPIYVLENNIPIDAKYYLENQLSKPLVRIF 910

Query: 1270 ASIEGTSPERL 1280
              I G   E +
Sbjct: 911  QPILGDKTESI 921


>gi|341875870|gb|EGT31805.1| hypothetical protein CAEBREN_32455 [Caenorhabditis brenneri]
          Length = 1017

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 200/838 (23%), Positives = 374/838 (44%), Gaps = 130/838 (15%)

Query: 481  NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIR 538
            N  +L  ++ + + +FL    + G  W+ +   K       ++ S C+ E+ VD  K+I 
Sbjct: 211  NIGNLYESNINPVVMFLANTNIVGCGWIELPAGKCRILSGGEKSSRCQIEVIVDV-KNII 269

Query: 539  VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
            V  S    A + P+   +++++ +  +R    E +   ++           +A+  K  G
Sbjct: 270  VHESDGEWAGIAPIRTLSLDIECI-GRRGVFPEAIKDPII----------QIANLVKIEG 318

Query: 599  MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
                F     + G   P+             GSN++ C  +E+ LL +    + ++D D+
Sbjct: 319  ESEPFVRNCFVLGTCAPV------------VGSNIIQC-VNEKVLLEKWAEFVREVDPDI 365

Query: 659  LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
            + G+NI  FDL  +L RA+V  +P    S +GR +        KG  +  +  S   M  
Sbjct: 366  ITGYNILNFDLPYILDRAKVLSLPQV--SHLGRQRD-------KGSIVRDAAISSKQMGS 416

Query: 719  -------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TL 769
                   I GR++ D         +  SY+L  ++   L++ +++V  H+++   Q    
Sbjct: 417  RVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNIIPDLQRGDE 475

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            ++   L +Y   DA+L + L+  L  +    ++  ++G              + +LL   
Sbjct: 476  QTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTG------------VPMNFLLTKG 523

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             + K ++ PD              S+H V    +  +       +N            G 
Sbjct: 524  QQIKVFLNPD-------------FSHHFVFALQILSMMLRRCKQNNFFLPVIEANSGDGE 570

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPS- 944
             Y G  V++P +G Y++ I  LDF SLYPSI+  +N+C+TT+ ++P G+        PS 
Sbjct: 571  GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKAPQGIENEDYIRTPSG 630

Query: 945  ------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
                  SK  G+LPE+L++++  R+  K  MK      K    + +Q ALK++ANS+YG 
Sbjct: 631  QYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGF 690

Query: 998  LGFSNSRFYAKPLAELITQQGREIL---RSTVDLVQNNLNLE--------VIYGDTDSIM 1046
             G +  +     +++ +T  GR+++   +S V+ +     L+        VIYGDTDS+M
Sbjct: 691  TGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALDGKCPADAKVIYGDTDSVM 750

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG----LYKRMLLLKKKKYAAVKVQFK 1102
            +  G++ +A+A                 +EI LD     +Y   LL+ KK+YA   + F 
Sbjct: 751  VKFGVETVAQA-----------------MEIGLDAAKEKVYSPYLLINKKRYAG--LYFT 791

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                ++ ++ KGL+ VRRD   L  +V   CL ++L +R  +  ++    ++     D+ 
Sbjct: 792  KPDVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIDRDQQSALDFAKRTI----SDLL 847

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++ +   +I+K LTK  + Y     Q HV++A R+K+    +    GD VPY+     
Sbjct: 848  CNKIDISLLIISKELTKSGDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYVF---- 901

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
              ++  +V   +RA  P  + + +    +D  +Y + Q+   ++R+   I G   E++
Sbjct: 902  -IAAAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 956


>gi|170104866|ref|XP_001883646.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641281|gb|EDR05542.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1064

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 310/680 (45%), Gaps = 103/680 (15%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
             GS VL  +   + L + R  +E  ++D DV++G+NI+GFD   L+ RA+   + +  + 
Sbjct: 322  VGSQVLSFDDEAKMLHSWRDFVE--QVDPDVVIGYNIAGFDFPYLMDRAKA--IKAIKFP 377

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT--FLCSRDLLREVSYSL 742
             +G+LK     K+    T F S   G      + + GRL  D   F+     LR  SY+L
Sbjct: 378  YLGKLKNV---KVETKNTHFSSKAYGQRDSKDTPLDGRLQLDVLQFMQREHKLR--SYTL 432

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
              +    L + +++V  H V+   Q  T ES   L  Y   DA+L   L+  L       
Sbjct: 433  NSVCAQFLGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLLDKLMCFVNYI 491

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            ++  ++G  +   L   ++ +V   L      + Y+VP          M  + S+     
Sbjct: 492  EMARVTGVPFNYLLSRGQSIKVLSQLFRKANDEGYVVP---------SMKGEGSDE---- 538

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                          Y G  V+EPKKG YD  I  LDF+SLYPSI
Sbjct: 539  -----------------------------QYEGATVIEPKKGYYDVPIATLDFSSLYPSI 569

Query: 921  IQEYNICFTTV--ERSPD--GLVPHL------------PSSKTTGVLPELLKNLVQRRRM 964
            +  +N+C+TT+  + + D  GLV  +             + K  G+LP +L++L+  R+ 
Sbjct: 570  MMAHNLCYTTLLDKATIDRLGLVKDVDYIQTPNNDLFATTKKRKGLLPTILEDLISARKR 629

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++ 
Sbjct: 630  AKADLKKETDPFKKAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIE 689

Query: 1024 STVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+        +  + E+IYGDTDS+M+  G +D+AK  A+  +    V  K+ K 
Sbjct: 690  KTKQEVEAEYCIANGHTHDAEIIYGDTDSVMVRFGPNDLAKVMALGIEAADLVTAKFVKP 749

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V + CL
Sbjct: 750  IKLEFEKVYYPYLLISKKRYAGLYWTKVD--KYDKMDSKGIETVRRDNCRLVSTVIETCL 807

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             ++L +R     V S  +   +   D+   +V + + VITK L+K       A  Q H +
Sbjct: 808  HKMLIDRD----VRSAEDYTKQTIADLLQNKVDMSQLVITKALSKTDY----AGKQAHAE 859

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+KQ    +  + GD V Y+I   +G       G A   +  D L   +    ID  
Sbjct: 860  LAERMKQRDAGSAPALGDRVAYVII--KGIK-----GAAAYEKSEDPLYVLENNLPIDTK 912

Query: 1255 YYASQQIHPVVSRLCASIEG 1274
            YY   Q+   + R+   I G
Sbjct: 913  YYLENQLSKPLMRIFEPILG 932


>gi|308800812|ref|XP_003075187.1| DPOD1_ORYSA DNA polymerase delta catalytic subunit gb|AAX96341.1| dna
            pol (ISS) [Ostreococcus tauri]
 gi|116061741|emb|CAL52459.1| DPOD1_ORYSA DNA polymerase delta catalytic subunit gb|AAX96341.1| dna
            pol (ISS), partial [Ostreococcus tauri]
          Length = 1115

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 197/760 (25%), Positives = 344/760 (45%), Gaps = 120/760 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   V G +W+ +         ++VS C+ E+ V   K I   +  ++ +++ P  + 
Sbjct: 261  FMVDCGVVGGNWIELPAGDYKVRSKKVSHCQIEVDVSYDKIISHPAEGEY-SKLAPFRIL 319

Query: 556  AINLKTVFNK------RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            +++++    K      +QD   ++  + +   +   D P++ + W              L
Sbjct: 320  SVDIECAGRKGHFPDAKQD--PVIQIATLVTEQGS-DKPIIRAVWT-------------L 363

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
            D    P+             G++VL  +  ER LL      L   D D+L+G+NI  FD 
Sbjct: 364  DT-CAPI------------VGADVLSFKD-ERELLRNWGSFLRGCDPDLLIGYNIVNFDF 409

Query: 670  DVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGA----SPGIMSCIAGRLL 724
              LL RA+   V     W   GR+  +   K+R   T+F S A        +SC  GR+ 
Sbjct: 410  PYLLDRAETLGVADFPYW---GRMIGT---KVRMRDTVFSSKAYGTHESKEISC-EGRVQ 462

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETD 782
             D     +   +  SYSL  ++   L + +++V  +  +   Q  T E+   L  Y   D
Sbjct: 463  FDMLRAIQRDYKLSSYSLNAVSAHFLGEQKEDVH-YSAISELQNGTPETRRRLAVYCLKD 521

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A+L   L+  L  +    ++  ++G      L   ++ +V   LL   R +  ++P    
Sbjct: 522  AYLPQRLLDKLMYMYNYIEMARVTGVPLNYLLTRGQSIKVMSQLLRKARQRNMLIP---- 577

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                  MAK+      E  NV+                     + G AY G  VLE K G
Sbjct: 578  -----HMAKR------EGGNVQ--------------------AEGGVAYEGATVLEAKSG 606

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT--------------VERSPDGLVPHLPSSKTT 948
             Y+  +  LDF SLYPSI+  +N+C++T              V  SP G    + ++   
Sbjct: 607  YYEVPVATLDFASLYPSIMMAHNLCYSTLVPKHMVSKLNPEDVGTSPAGDT-FVKANNVK 665

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LPE+L+ L+  R+  K  +K A+   ++  LD +Q ALK++ANS+YG  G +  +   
Sbjct: 666  GILPEILEELLGARKRAKADLKKATDPFVKAVLDGRQLALKISANSVYGFTGATVGQLPC 725

Query: 1008 KPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKA 1059
              ++   T  GR ++  T  +V+           N EVIYGDTDS+MI     D+A+A  
Sbjct: 726  LEISSSTTAYGRTMIDHTKKMVEERYTTMNGYAGNAEVIYGDTDSVMIKFNTPDLAEAMR 785

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +    V+  + K ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ V
Sbjct: 786  LGEEAAVYVSDTFLKPIKLEFEKVYWPYLLISKKRYAG--LLWTNTEKYDKMDTKGIETV 843

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  LL ++V +  L +IL ER  +  V+ + N++     D+   ++   + VITK  T
Sbjct: 844  RRDNCLLVRQVVETVLEKILKERDVQGAVKYVQNTI----ADLLMNKLDFSQLVITKGFT 899

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            K  ++Y       H+++A R++Q   +T    GD + Y+I
Sbjct: 900  KEADSY--GVKMAHIELAQRMRQRDPATAPVVGDRIAYVI 937


>gi|194749801|ref|XP_001957325.1| GF10365 [Drosophila ananassae]
 gi|190624607|gb|EDV40131.1| GF10365 [Drosophila ananassae]
          Length = 1092

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 187/687 (27%), Positives = 314/687 (45%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  LL+R    + ++D D+L G+NI+ FD+  LL+RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQLLDRWSAFVREVDPDILTGYNINNFDIPYLLNRAAHLKVKN--FEYL 405

Query: 690  GRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K   +  + K + I     G          GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIK--NIRSVIKEQVIQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   R K +I+P   +Y  +                 
Sbjct: 521  RVTGVPLESLLTRGQQIKVMSQLLRKARTKGFIMP---SYTSQ----------------- 560

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                  D  F+                  G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 561  ----GSDEQFE------------------GATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLREQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  EMTKNEVESHYTQANGYESNALVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA   + F     Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAG--LYFTRPETYDKMDCKGIETVRRDNSPLVANLMNTC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V        +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYAK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G   E +
Sbjct: 941  TYYLEQQLAKPLLRIFEPILGEKAESI 967


>gi|380019903|ref|XP_003693840.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Apis florea]
          Length = 1105

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 179/682 (26%), Positives = 304/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E+ E  +L +    + +LD D+  G+NI+ FD   L++RA    V    +  
Sbjct: 365  VGCQVLSFET-EHKMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRASHLNVRDFYF-- 421

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +S +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 422  LGRIKNIKSVIKTQVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 479

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 480  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 538

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                          
Sbjct: 539  VTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMPV------------------------- 573

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             HR       + G  V+EPK+G Y+  I  LDF+SLYPSII  +
Sbjct: 574  -----------------HRGQASDEQFEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAH 616

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +       ++ S   T               G+LPE+L+NL+  R+  K  +
Sbjct: 617  NLCYTTLLKYDKQTKNNIQSDNITITPNDSKFIKANIRKGILPEILENLLSARKAAKAEL 676

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 677  KKETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIERTKQE 736

Query: 1029 VQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+           N  V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 737  VEEQYCISKGYKNNAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 796

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 797  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 854

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + VITK LTK       A  Q HV++A ++
Sbjct: 855  DRNPNDAM----NYAKQIISDLLCNRIDISQLVITKELTKTDY----AAKQAHVELAAKM 906

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  +   +    ID +YY  
Sbjct: 907  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDP--IYVLENNIPIDTNYYLE 958

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 959  NQLAKPLVRIFEPILGEKAESL 980


>gi|324120754|dbj|BAJ78768.1| DNA polymerase delta catalytic subunit [Chrysoperla nipponensis]
          Length = 1052

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 203/824 (24%), Positives = 346/824 (41%), Gaps = 131/824 (15%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAP-----QRVSWCKYEITVDSPKDIRVSSSSKHVAE 548
            F+V + VKG  W+ +    +   P+P      + S C +E+ V S  D+   +     ++
Sbjct: 196  FMVDKHVKGCCWIELPSGTWRHRPSPLSPGVHKESRCNFEVDV-SCNDLIAHAPEGEWSK 254

Query: 549  VPPVTVTAI-----NLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHF 603
            V P    +      N K +F + +    I  A+VV  H             K    ++H 
Sbjct: 255  VAPFYFLSFDIECDNRKGIFPEPEHDAVIQIANVVQRHGDAQPIYCNVYTLKSCAPIAHA 314

Query: 604  TVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
             V            F KE                     +LN     + KLD DV+ G+N
Sbjct: 315  EV----------FSFEKEGD-------------------MLNAWAEFVRKLDPDVVTGYN 345

Query: 664  ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
            I+ FDL  L +RA+  ++    +  +GRLK        K       G        + GRL
Sbjct: 346  INNFDLPYLTNRAKTLKL--DKFPFLGRLKNVVSVVREKVTQSKLLGRREYKYVNMEGRL 403

Query: 724  LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE-SLMELIEYGETD 782
              D  + +R   R  SY+L  +A+  L + +++V    +  +F   E +   L  Y   D
Sbjct: 404  PYDMLIVARRNCRLRSYTLNNVAQELLGQQKEDVHHTQISDLFNGDEQTRHRLAVYCIKD 463

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A L + ++ HL+      +L  +SG      +      +V   LL   +A  Y++P    
Sbjct: 464  AQLPLRILNHLNSFTNDMELARVSGVTINLLMTRGEQIKVVTQLLSQAQAAGYLMP---V 520

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
            Y             G +D+                             + G  V+EP +G
Sbjct: 521  Y----------KGQGTDDQ-----------------------------FEGATVIEPVRG 541

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT----------------VERSPDGLVPHLPSSK 946
             Y   I  LDFNSLYPSI+  +N+C+TT                + ++P       P+ +
Sbjct: 542  YYTDPIATLDFNSLYPSIMMAHNLCYTTLLHPSNKDKFGLTEDQITKTPSNHFFVKPTVR 601

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+LP +L+NL+  R+  K  ++  +  +K   L+ +Q ALKL+ANS+YG  G  N + 
Sbjct: 602  -RGLLPYILENLLAARKKAKKELEAETDPVKKSVLNGRQLALKLSANSVYGFTGAQNGKL 660

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKA 1057
                ++  +T  GR ++  T   V+           N +VIYGDTDS+M+  G+ D+ + 
Sbjct: 661  PCLEISGSVTAFGRTMIERTRQEVEEKYTMANGYEHNAQVIYGDTDSVMVKFGVKDLERC 720

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+   + ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++
Sbjct: 721  MELGREAAAYVSAKFINPIRLEFEKVYYPYLLINKKRYAGLYYTKPDK--YDKMDCKGIE 778

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD S L     + CL ++L ++  E  +E       +V  D+   ++ + + +I+K 
Sbjct: 779  TVRRDNSPLVANTINLCLQKLLIQKDPEGAIEHTK----QVISDLLCNRIDISQLIISKE 834

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK    Y     Q HV++A ++KQ    T    GD VP++I      S+  +     +A
Sbjct: 835  LTK--NEY--TAKQAHVELAKKMKQRDAGTAPQLGDRVPFVI-----ISATKNTRAYDKA 885

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
              P  +   +    ID+DYY   Q+   + R+   + G   E +
Sbjct: 886  EDP--IYVLENNIPIDVDYYLQNQLAKPLVRIFQPVLGDKAESI 927


>gi|148690785|gb|EDL22732.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_d
            [Mus musculus]
          Length = 1101

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 915  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 967

Query: 1269 CASIEG 1274
               I G
Sbjct: 968  FEPILG 973


>gi|148690782|gb|EDL22729.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_a
            [Mus musculus]
          Length = 1127

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 394  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 453

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 454  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 507

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 508  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 566

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 567  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 600

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 601  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 643

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 644  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 703

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 704  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 763

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 764  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 823

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 824  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 882

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 883  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 936

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 937  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 989

Query: 1269 CASIEG 1274
               I G
Sbjct: 990  FEPILG 995


>gi|195127716|ref|XP_002008314.1| GI13419 [Drosophila mojavensis]
 gi|193919923|gb|EDW18790.1| GI13419 [Drosophila mojavensis]
          Length = 1092

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 183/682 (26%), Positives = 317/682 (46%), Gaps = 102/682 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC  + E  LL++    + ++D D+L G+NI+ FD+  LL+RA   +V +  +  +
Sbjct: 353  GSQVLCF-AQETQLLDKWGAFVREVDPDILTGYNINNFDVPYLLNRAAHLKVKN--FEYL 409

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLA 746
            GR+K        +       G          GR+  D F     LLR+    SY+L  ++
Sbjct: 410  GRIKNIRSVIKEQVLQSKQMGRRENQYVNFEGRVPFDLFFV---LLRDYKLRSYTLNAVS 466

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  
Sbjct: 467  YHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLGKLMAIVNYMEMAR 525

Query: 805  ISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            ++G      L   R Q+++ L  LL   + + +I+P   +Y                   
Sbjct: 526  VTGVPLESLL--TRGQQIKVLSQLLRKAKTRGFIMP---SYT------------------ 562

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                          +S +D +       Y G  V+EPK+G Y   I  LDF SLYPSI+ 
Sbjct: 563  --------------SSGSDEQ-------YEGATVIEPKRGYYADPISTLDFASLYPSIMM 601

Query: 923  EYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
             +N+C+TT                VER+P   +  + +    G+LPE+L++L+  R+  K
Sbjct: 602  AHNLCYTTLLLPGAKDKLGLSDDQVERTPANNL-FVKAELRRGLLPEILESLLAARKRAK 660

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K      K Q LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T
Sbjct: 661  NDLKVEQDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIELT 720

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
             + V+++         +  VIYGDTDS+M++ G+  + ++  +  +    V+ K+ + ++
Sbjct: 721  KNEVESHYTRANGYENDAFVIYGDTDSVMVNFGVKTLERSMELGREAADLVSSKFVRPIK 780

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL +
Sbjct: 781  LEFEKVYYPYLLINKKRYAGLYFTKPDK--YDKMDCKGIETVRRDNSPLVANLMNSCLQK 838

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L ER  +  V+       +V  D+   ++ + + VITK L K       A  Q HV++A
Sbjct: 839  LLIERDPDGAVDYAK----QVIADLLCNRIDISQLVITKELAKTDY----AAKQAHVELA 890

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID +YY
Sbjct: 891  AKMKKRDAGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDANYY 943

Query: 1257 ASQQIHPVVSRLCASIEGTSPE 1278
              QQ+   + R+   I G   E
Sbjct: 944  LEQQLSKPLLRIFEPILGDKAE 965


>gi|324120728|dbj|BAJ78755.1| DNA polymerase delta catalytic subunit [Blattella nipponica]
          Length = 1039

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 311/674 (46%), Gaps = 97/674 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            + E+ LL +    + ++D D++ G+NI+ FD   L++RA+  +V S  +S +GR+K  ++
Sbjct: 309  AREQELLEKWAAFVREVDPDLITGYNINNFDFPYLINRAKHLKVAS--FSFLGRVK--DI 364

Query: 698  PKLRKGRTI----FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
              + K + +     G   +  I +C  GR L D  L      +  SY+L  ++   L++ 
Sbjct: 365  SSVIKEQILQSKQMGRRENKNI-NC-EGRTLFDLLLVLVRDYKLRSYTLNAVSYHFLSEQ 422

Query: 754  RKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
            +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G    
Sbjct: 423  KEDVH-HSIITDLQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVSLS 481

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
              L   +  +V   LL   R K Y++P     V+E +                       
Sbjct: 482  SLLTRGQQIKVVSQLLRKAREKGYLMPAYGGGVQEEQ----------------------- 518

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                               Y G  V+EPKKG Y   I  LDF+SLYPSI+  +N+C+TT+
Sbjct: 519  -------------------YEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTL 559

Query: 932  ----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
                 R   GL P            +  S   G+LPE+L+NL+  R+  KT +K      
Sbjct: 560  LNPASRDNLGLTPDKYVKTPAQNFFVNKSVRKGLLPEILENLLSARKKAKTDLKNEKDPF 619

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            + + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ + N+
Sbjct: 620  RQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRAMIEQTKQEVEQHYNM 679

Query: 1036 --------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                    +VIYGDTDS+M+  G+  + +A  +  +    V++K+   ++++ + +Y   
Sbjct: 680  ANGYQHDAQVIYGDTDSVMVKFGVQTLEEAMELGREAANYVSEKFPPPIKLEFEKVYFPY 739

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL +IL +R     
Sbjct: 740  LLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVANMMNTCLQKILIDRDPTGA 797

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V+       +V  D+   ++ + + VITK L K       A  Q HV++A ++K+    T
Sbjct: 798  VDYAK----QVIADLLCNRIDISQLVITKELAKSDY----AAKQAHVELAAKMKKRDPGT 849

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD VPY+I      S+  +    Q+A  P  +   +    ID  YY   Q+   + 
Sbjct: 850  APKLGDRVPYVI-----ISAAKNTPAYQKAEDP--IYVLENSVPIDSTYYLENQLSKPLL 902

Query: 1267 RLCASIEGTSPERL 1280
            R+   I G   E +
Sbjct: 903  RIFEPILGDKAESI 916


>gi|126459662|ref|YP_001055940.1| DNA polymerase II [Pyrobaculum calidifontis JCM 11548]
 gi|126249383|gb|ABO08474.1| replicative DNA polymerase I [Pyrobaculum calidifontis JCM 11548]
          Length = 783

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 185/663 (27%), Positives = 305/663 (46%), Gaps = 113/663 (17%)

Query: 625  RNSKAGSNVLCCESSERALLNRLMIELYK-LDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
            + S     V   E  +   + R  ++  K  D DV+VG+N +GFD   L  RA+   VP 
Sbjct: 192  KTSDGREEVFEAEGRDDRRVIRGFVDFVKEFDPDVIVGYNSNGFDWPYLSERAKALGVPL 251

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
                ++ RL    +P+    ++++G  +       + GR   D +    +       +L 
Sbjct: 252  ----RVDRL--GGVPQ----QSVYGHWS-------VVGRANVDLYNIVDEFPEIKVKTLD 294

Query: 744  QLAK---TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            ++A+        +R  +  H V + +        L+ Y   D   ++ L   L  LP   
Sbjct: 295  RVAEYFGVMKRSERVLIPGHKVYEYWNDPAKRPTLMRYVLDDVRSTLGLAEKL--LPFLI 352

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            QL+++SG    +    +   RVE++LL +A+R  + + P++                  E
Sbjct: 353  QLSSVSGLPLDQVAAASVGNRVEWMLLRYAYRMGE-VAPNR------------------E 393

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            +R  E                          Y G +VLEPK GLY   +L+LDF+S+YP+
Sbjct: 394  EREYE-------------------------PYKGAIVLEPKPGLYSD-VLVLDFSSMYPN 427

Query: 920  IIQEYNICFTTV-----ERSPDGLV-----PHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            I+ +YN+   T         P+G+V      H      TG +P +LK+LV+ RR V+   
Sbjct: 428  IMMKYNLSPDTYLEPHEPDPPEGVVVAPEVGHRFRKAPTGFIPAVLKHLVELRRAVREEA 487

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K       + + LD +Q+ALK+ AN+MYG LG+  +R+Y K +AE +T   R IL   V+
Sbjct: 488  KKYPPDSPEYRLLDERQRALKVMANAMYGYLGWVGARWYKKEVAESVTAFARAILLDVVE 547

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
              +  L +EVIYGDTDS+ +        K      ++++ V +++  +EI +D  Y+R+L
Sbjct: 548  YAK-RLGIEVIYGDTDSLFV--------KKSGAVDRLVKYVEERH-GIEIKVDKDYERVL 597

Query: 1088 LLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
              + KK+YA +    +DG     I+  G ++VR DW  L+KEV    +  IL  +S  + 
Sbjct: 598  FTEAKKRYAGL---LRDGR----IDIVGFEVVRGDWCELAKEVQLNVVELILKSKSVGEA 650

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
             E +   + +V E +++ +  L+  +I KTL K  + Y      PHV  AL LK+ GY  
Sbjct: 651  RERVVKYVREVVERLKAYKFDLDDLIIWKTLDKELDEY--KAYGPHVHAALELKRRGYKV 708

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
            G   G TV Y+I    G  S  ++         D+  K      +D+DYY  +Q+ P   
Sbjct: 709  G--KGTTVGYVIVRGPGKVSERAMPYI----FVDDASK------VDVDYYIEKQVIPAAL 756

Query: 1267 RLC 1269
            R+ 
Sbjct: 757  RIA 759


>gi|26353290|dbj|BAC40275.1| unnamed protein product [Mus musculus]
          Length = 1105

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  ---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILMDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 915  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 967

Query: 1269 CASIEG 1274
               I G
Sbjct: 968  FEPILG 973


>gi|14318657|gb|AAH09128.1| Polymerase (DNA directed), delta 1, catalytic subunit [Mus musculus]
 gi|30962877|gb|AAH52670.1| Polymerase (DNA directed), delta 1, catalytic subunit [Mus musculus]
          Length = 1105

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  ---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 915  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 967

Query: 1269 CASIEG 1274
               I G
Sbjct: 968  FEPILG 973


>gi|254587977|ref|NP_035261.3| DNA polymerase delta catalytic subunit [Mus musculus]
 gi|341940458|sp|P52431.2|DPOD1_MOUSE RecName: Full=DNA polymerase delta catalytic subunit
 gi|74139374|dbj|BAE40829.1| unnamed protein product [Mus musculus]
 gi|74195649|dbj|BAE39632.1| unnamed protein product [Mus musculus]
 gi|74223279|dbj|BAE40772.1| unnamed protein product [Mus musculus]
          Length = 1105

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 176/655 (26%), Positives = 303/655 (46%), Gaps = 95/655 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +      + R +   
Sbjct: 383  ILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 439

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   
Sbjct: 440  GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 495

Query: 767  QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L   R Q+V+ 
Sbjct: 496  QNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--TRGQQVKV 553

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +                     +++ +Q    G+    V+   +ED              
Sbjct: 554  V---------------------SQLLRQAMRQGLLMPVVKTEGSED-------------- 578

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R          P
Sbjct: 579  ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 632

Query: 936  DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
            D  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q LD +Q ALK
Sbjct: 633  DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 692

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYG 1040
            ++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        V+YG
Sbjct: 693  VSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYG 752

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ KK+YA +  
Sbjct: 753  DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 812

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    +    V  
Sbjct: 813  SSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 867

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+I 
Sbjct: 868  DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 925

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                   G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 926  -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973


>gi|438134|emb|CAA79895.1| DNA-directed DNA polymerase [Mus musculus]
          Length = 1105

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 176/655 (26%), Positives = 302/655 (46%), Gaps = 95/655 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +      + R +   
Sbjct: 383  ILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 439

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   
Sbjct: 440  GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 495

Query: 767  QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L   R Q+V+ 
Sbjct: 496  QNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--TRGQQVKV 553

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +                     +++ +Q    G+    V+    ED              
Sbjct: 554  V---------------------SQLLRQAMRQGLLMPVVKTEGGED-------------- 578

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R          P
Sbjct: 579  ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 632

Query: 936  DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
            D  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q LD +Q ALK
Sbjct: 633  DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 692

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYG 1040
            ++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        V+YG
Sbjct: 693  VSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYG 752

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ KK+YA +  
Sbjct: 753  DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 812

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
              +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    +    V  
Sbjct: 813  SSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 867

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+I 
Sbjct: 868  DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 925

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                   G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 926  -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973


>gi|148690786|gb|EDL22733.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_e
            [Mus musculus]
          Length = 1105

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 305/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 915  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 967

Query: 1269 CASIEG 1274
               I G
Sbjct: 968  FEPILG 973


>gi|2581884|gb|AAC47769.1| DNA polymerase alpha [Leishmania deanei]
 gi|2581894|gb|AAC47774.1| DNA polymerase alpha [Leishmania hertigi]
          Length = 308

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 181/336 (53%), Gaps = 61/336 (18%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SFWSTIGRLDLKRLPRFQGSATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPH-DVLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA+      + K      P   VL   M  T + +  ++      A LSM ++ HL V+
Sbjct: 63  SLAEQMHLYGIAKGSNTFEPGISVLTPAMLSTSQDIYNVLLQVCNCAVLSMSVISHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LTR+LT I+GNLW +TL G R++R+EYLLLH F   K+I PD+  YV++ K  + R + 
Sbjct: 123 RLTRRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDR--YVQDFK--RSRDDE 178

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
           G ED                        GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 179 GEED------------------------GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERSPDGLVPHLP-------SSKTTG---------VLPELLKNLVQ 960
           YPS+IQE+NICFTTV+R    ++   P       S    G         +LP+++K+LV 
Sbjct: 215 YPSLIQEFNICFTTVDRKDQSVIDVPPPENLICASCAGAGLSAPCLHKCILPKVIKSLVD 274

Query: 961 RRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
            RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 275 SRREVKRLMKTEKDANSLAL--LEIRQRALKLTANS 308


>gi|332158501|ref|YP_004423780.1| DNA polymerase I [Pyrococcus sp. NA2]
 gi|331033964|gb|AEC51776.1| DNA polymerase I [Pyrococcus sp. NA2]
          Length = 775

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 176/649 (27%), Positives = 297/649 (45%), Gaps = 98/649 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            ++ER ++ RL+  + + D DV++ +N   FD   LL RA+       M   +GR   SE 
Sbjct: 185  ANEREMIKRLIKVIREKDPDVIITYNGDNFDFPYLLKRAEKL----GMKLPLGR-DNSE- 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++            +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKMQR--------LGDSLAVEIKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKQKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTLQG 816
             PH++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G  LW  + + 
Sbjct: 291  YPHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GKEFFPMEAQLARLVGQPLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K                                    
Sbjct: 348  STGNLVEWYLLRKAYERNELAPNK------------------------------------ 371

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
                   + +   +Y GG V EP++GL++  I+ LDF SLYPSII  +N+   T+ +   
Sbjct: 372  -PDEREYERRLRESYEGGYVKEPERGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNKEGC 429

Query: 937  GL------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKL 989
            G       V H       G +P LL +L++ R+ +K  MK +   ++ + LD +Q+A+K+
Sbjct: 430  GEYDEAPEVGHRFCKDFPGFIPSLLGSLLEERQKIKKRMKESKDPVERKLLDYRQRAIKI 489

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSIM 1046
             ANS YG  G++ +R+Y K  AE +T  GR+     ++LV+  L     +V+Y DTD + 
Sbjct: 490  LANSFYGYYGYAKARWYCKECAESVTAWGRQ----YIELVRRELEERGFKVLYIDTDGLY 545

Query: 1047 IH-SGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
                G  +  + K  A + +  +N K    LE++ +G Y R   + KKKYA +  + K  
Sbjct: 546  ATIPGEKNWEEIKRRALEFVNYINSKLPGILELEYEGFYTRGFFVTKKKYALIDEEGK-- 603

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                 I  +GL++VRRDWS ++KE     L  IL   + E+ V+ +     +V E + + 
Sbjct: 604  -----IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVK----EVTEKLSNY 654

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            ++ +EK VI + +T+P   Y      PHV VA RL   G       G  + Y++    G 
Sbjct: 655  EIPVEKLVIYEQITRPLNEYKAI--GPHVAVAKRLAAKG--IKIKPGMVIGYVVLRGDGP 710

Query: 1225 SSGSSVGIAQRARHPDELKKGDG-KWMIDIDYYASQQIHPVVSRLCASI 1272
             S  ++ I +           DG K   D +YY   Q+ P V R+  + 
Sbjct: 711  ISKRAIAIEE----------FDGKKHKYDAEYYIENQVLPAVERILKAF 749


>gi|358057090|dbj|GAA96997.1| hypothetical protein E5Q_03671 [Mixia osmundae IAM 14324]
          Length = 769

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 184/679 (27%), Positives = 308/679 (45%), Gaps = 99/679 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SK 688
            GS VL  +  E+ LL++    + + D DV++G+NI+ FD+  L+ RA+  +V    + S+
Sbjct: 26   GSEVLSFQE-EKELLHQWRNFIVEADPDVIIGYNIANFDIPYLIARAKHLKVHDFAYMSR 84

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            I      +M + ++ R  F S   G      + + GR+  D     +   +  SYSL  +
Sbjct: 85   ISTRSAEKMVETKESR--FSSKAYGTRDSKETPMDGRIQFDVLQVMQRDHKLRSYSLNAV 142

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
                L + +++V  H ++   Q  T ES   L  Y   DA+L   L+  L       ++ 
Sbjct: 143  CAHFLGEQKEDVH-HSIITELQNGTPESRRRLAVYCLKDAYLPQRLLDKLMSFINYIEMA 201

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G  +   L   +  +V   L      + Y++P                         
Sbjct: 202  RVTGVPFNYLLSRGQQIKVVSQLFRKAGEEGYVIP------------------------- 236

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
              L  E ++                  Y G  V+EP +G YD  I  LDF+SLYPSI+  
Sbjct: 237  -SLKGEGSD----------------EQYEGATVIEPTRGYYDVPIATLDFSSLYPSIMMA 279

Query: 924  YNICFT------TVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
            +N+C+T      T++R           +P+G      S K  G+LP +L++L+  R+  K
Sbjct: 280  HNLCYTTLMDKKTIDRLGFLIDKDYIMTPNGDF-FAKSHKRKGLLPTVLEDLLSARKRAK 338

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              MK  +   K   LD +Q ALK++ANS+YG  G +  +    P++   T  GRE++  T
Sbjct: 339  NDMKNETDPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLPISTSTTAYGREMIERT 398

Query: 1026 VDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               VQ+  N         EVIYGDTDS+M+  G  D+A+   +  +    V +K+ + ++
Sbjct: 399  KQEVQDKYNTKNGYENDAEVIYGDTDSVMVRFGTKDLAETMKLGAEAAAYVTEKFVRPIK 458

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V + CL++
Sbjct: 459  LEFEKVYYPYLLISKKRYAGLYWTRPD--RYDKMDTKGIETVRRDNCQLVSTVIETCLNK 516

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK-NQPHVQV 1195
            +L ER      E +     +V  D+   ++ L + VITK L K      D K  Q HV++
Sbjct: 517  MLIERDLSGAEEYVK----QVISDLLQNKIDLSQLVITKALAK-----TDYKAKQAHVEL 567

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+++    +  S GD V ++I   +GT+   +       +  D +   D    ID  Y
Sbjct: 568  AERMRKRDAGSAPSLGDRVAFVII--KGTTDARAY-----EKSEDPIYVLDHNLPIDTRY 620

Query: 1256 YASQQIHPVVSRLCASIEG 1274
            Y   Q+   + R+   I G
Sbjct: 621  YLDNQLSKPLMRIFEPIMG 639


>gi|324120744|dbj|BAJ78763.1| DNA polymerase delta catalytic subunit [Metylophorus sp. E-43]
          Length = 1036

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 183/678 (26%), Positives = 302/678 (44%), Gaps = 94/678 (13%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC +  E  LL +    + ++D D+  G+NI+ FD   L++RA+   V   ++  +
Sbjct: 297  GSQVLCFDK-ETELLKKWAAFVREVDPDIFTGYNINNFDFPYLINRAKHLNVQDFVY--L 353

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            GR+K  +S +          G   +  I     GR+  D  L      +  SYSL  ++ 
Sbjct: 354  GRIKDIKSVIKDSFLQSKQMGRRENKSIN--FEGRVPFDLLLVLTRDYKLRSYSLNAVSY 411

Query: 748  TQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L + +++V  H ++   Q     +   L  Y   DA+L + L+  L  +    ++  +
Sbjct: 412  HFLQEQKEDVH-HSIISELQQGGPHTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARV 470

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G      L   +  +V   LL   R K +++P               + HG        
Sbjct: 471  TGVALPSLLTRGQQIKVLSQLLRKTREKGFLMP---------------AYHG-------- 507

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                       T  +D         Y G  V+EP+KG Y   I  LDF+SLYPSI+  +N
Sbjct: 508  -----------TGGDDQ--------YEGATVIEPRKGYYADPIATLDFSSLYPSIMMAHN 548

Query: 926  ICFTT---------VERSPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +C+TT         ++ S D           +  S   G+LPE+L+NL+  R+  K  +K
Sbjct: 549  LCYTTLLQGGVKEKLDLSTDQYTKTPAQNYFVHKSVRKGLLPEILENLLDARKKAKADLK 608

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              +  L+ + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V
Sbjct: 609  NETDELRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEQTRLEV 668

Query: 1030 QNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +   N+E        VIYGDTDS+M+  G  D+A+   +  +    V+ K+   ++++ +
Sbjct: 669  EQKFNIENGYKHDSVVIYGDTDSVMVRFGNKDLAECMDLGREAADHVSAKFLSPIKLEFE 728

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD + L   + + CL +IL  
Sbjct: 729  KVYYPYLLINKKRYAGLYWTRPDK--YDKLDCKGLETVRRDNAPLVANMMNSCLQKILIN 786

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  +  V        KV  D+   +V + + VITK L K       A  Q HV++A ++K
Sbjct: 787  RDPDGAVAYAK----KVIADLLCNKVDISQLVITKELAKSDY----AAKQAHVELAAKMK 838

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +         GD VPY+ICC       ++ G     +  D +   +    ID  YY   Q
Sbjct: 839  KRDPGNAPKLGDRVPYVICC-------ATKGTPAYQKAEDPIYVLENSIPIDFSYYLENQ 891

Query: 1261 IHPVVSRLCASIEGTSPE 1278
            +   + R+   I G   E
Sbjct: 892  LAKPLLRIFEPILGDKAE 909


>gi|302687116|ref|XP_003033238.1| hypothetical protein SCHCODRAFT_81939 [Schizophyllum commune H4-8]
 gi|300106932|gb|EFI98335.1| hypothetical protein SCHCODRAFT_81939 [Schizophyllum commune H4-8]
          Length = 1072

 Score =  190 bits (483), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 217/825 (26%), Positives = 360/825 (43%), Gaps = 137/825 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   V G +WL +   K+   P  Q+ S C+ E+ V     I      K    + P+ 
Sbjct: 218  FMIDTNVVGMNWLELPAGKYDLIPDKQKKSRCQIEVNVRYDAFISHPPDGKW-QRIAPLR 276

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            + + +++     RQ +            +AK+D          P +     V R+ +G  
Sbjct: 277  ILSFDIECA--GRQGI----------FPEAKVD----------PVIQIANMVTRQGEG-- 312

Query: 614  FPMGFNKEATDRNSKA---GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                F +     N+ A   GS VL  ++ ER +L      + ++D DV++G+NIS FD  
Sbjct: 313  --QPFVRNVFTLNTCAHIVGSQVLSYKN-EREMLMAWRDFVEEVDPDVVIGYNISNFDFP 369

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT--F 728
             L+ RA+  ++  + +  +GRLK  +        +    G      + + GRL  D   F
Sbjct: 370  YLMDRAEALKL--TEFPFLGRLKNKQTVVKDTHFSSKAYGQRDSKETPLDGRLQLDILQF 427

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
            +     LR  SYSL  +    L + +++V  H ++   Q  T ES   L  Y   DA+L 
Sbjct: 428  MQREHKLR--SYSLNSVCAHFLGEQKEDVH-HSIITELQNGTDESRRRLAVYCLKDAYLP 484

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              L+  L       ++  ++G  +   L  AR Q ++ L  L     +  YI+P      
Sbjct: 485  QRLLDKLMCFVNYIEMARVTGVPFNYLL--ARGQSIKVLSQLFRKANSDNYIIP------ 536

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                                 L  E ++                  Y G  V+EPKKG Y
Sbjct: 537  --------------------ALKGEGSD----------------EQYEGATVIEPKKGYY 560

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT-VERSPD---GLVP------------HLPSSKTT 948
            D  I  LDF+SLYPSI+  +N+C+TT V+RS     GLV              + ++K  
Sbjct: 561  DAPIATLDFSSLYPSIMMAHNLCYTTLVDRSTIERLGLVKDVDYIQTPNNDFFVKATKRK 620

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +L++L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  +   
Sbjct: 621  GLLPTVLEDLISARKRAKADLKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPC 680

Query: 1008 KPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKA 1059
              ++  +T  GR+++  T   V++          + EVIYGDTDS+M+  G  D+A    
Sbjct: 681  LAISSSVTSYGRQMIEKTKQEVESQYCIANGFKHDAEVIYGDTDSVMVKFGPADLATVME 740

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +    V  K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ V
Sbjct: 741  MGAEAADFVTGKFVKPIKLEFEKVYFPYLLISKKRYAG--LYWTKTEKYDKLDSKGIETV 798

Query: 1119 RRDWSLLSKEVGDFCLSQILSER---SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            RRD   L   V + CL ++L +R     ED V+   + L++ + DM        + VITK
Sbjct: 799  RRDNCRLVSTVIETCLHKMLIDRDVKGAEDYVKHTISELLQNKVDM-------SQLVITK 851

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             L K          Q HV++A R+++    +  + GD V Y+I   +G       G A  
Sbjct: 852  ALAKADY----TGKQAHVELAERMRKRDKHSAPALGDRVAYVII--KGMK-----GAAAY 900

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             +  D L   +    ID  YY   Q+   + R+   I G+    L
Sbjct: 901  EKAEDPLYVLENNVPIDTQYYLENQLSKPLMRIFEPILGSRANSL 945


>gi|302911020|ref|XP_003050401.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731338|gb|EEU44688.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1104

 Score =  190 bits (483), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 212/828 (25%), Positives = 359/828 (43%), Gaps = 145/828 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  KV+G SW+      F   P   R S C+ E  V S  D+         +++ P+ 
Sbjct: 248  FMVDCKVRGMSWVEAPAKTFQLLPENLRQSNCQIEAEV-SYLDLIAHEPVGEWSKMAPLR 306

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F + Q    I  A++V  +  K           KP + + F +   
Sbjct: 307  ILSFDIECAGRKGIFPEAQHDPVIQIANIVTKYGEK-----------KPFVRNVFCL--- 352

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           + +S   + +L  E  E+ +L+     L   D D++ G+NIS FD
Sbjct: 353  --------------QETSSIVATQILEFEKEEK-MLSEWQKFLITTDPDIITGYNISNFD 397

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +V     W++I  +        +   T F S   G      +   GRL 
Sbjct: 398  FPYLLDRARHLKVSGFEYWTRIPSVAS------KAKETNFSSKQMGNRDTKATNTNGRLQ 451

Query: 725  CDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  SY+L  +    L + +++V    + ++F  T ES   L  Y   
Sbjct: 452  LDMLQLIQRDHHLR--SYTLNSVCANFLGEQKEDVHHTMITELFNGTPESRRRLALYCLK 509

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P 
Sbjct: 510  DAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--SRGQQIKFISQLFRKALEQKLVIP- 566

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                            N  ++ S            Y G  V+EP
Sbjct: 567  --------------------------------NLKSEVSDEQ---------YEGATVIEP 585

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVPHLPSSKT- 947
             +G YD  I  LDF SLYPSI+Q +N+C+TT           +++  D +V   P+  T 
Sbjct: 586  TRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVSKKAIEAFGLQKDEDYIV--TPNGDTF 643

Query: 948  ------TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGF 1000
                   G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G 
Sbjct: 644  VTVKQRKGLLAQILEELLAARKQAKRELAVEKDPFKKAVLNGRQLALKISANSVYGLTGA 703

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGID 1052
            +  +     +A   T  GR+++  T + V+N  N+        +VIYGDTDS+MI  G  
Sbjct: 704  TTGKLPCLEIASSTTSFGRKMIEKTKEEVENRYNIANGYSHDAQVIYGDTDSVMIKFGTK 763

Query: 1053 DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D+ +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++
Sbjct: 764  DLKEAMKLGEEASKYVSDKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMD 821

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KG++ VRRD  LL + V +  L  IL ++  +   E +  ++     D+   +V + K 
Sbjct: 822  TKGIETVRRDNCLLVQTVIEKVLRMILIDQDVQGAQEYVKETIA----DLLQNKVDMSKL 877

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK LTK  + Y  A  Q HV++A R+K+    +    GD V Y++          + G
Sbjct: 878  VITKALTK--DDY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------RGAAG 926

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                 +  D +   +    ID  YY   Q+   + R+   I G +  R
Sbjct: 927  AKNFEKSEDPIYVLEHNVPIDTRYYLDNQLAKPLGRIFEPILGETKAR 974


>gi|66475912|ref|XP_627772.1| DNA polymerase delta catalytic subunit. DNAQ-like 3'-5' exonuclease;
            RNAseH fold [Cryptosporidium parvum Iowa II]
 gi|32399018|emb|CAD98258.1| DNA polymerase family B subunit, probable [Cryptosporidium parvum]
 gi|46229188|gb|EAK90037.1| DNA polymerase delta catalytic subunit. DNAQ-like 3'-5' exonuclease;
            RNAseH fold [Cryptosporidium parvum Iowa II]
          Length = 1084

 Score =  190 bits (483), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 252/983 (25%), Positives = 413/983 (42%), Gaps = 175/983 (17%)

Query: 450  GQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL---FLVKRKVKGPS 506
            G +EI   + Y + +  P   P   + ++  N   +   + + +     +L+ R +   S
Sbjct: 172  GDSEIEDSQFYKITLQLPNLVPTCRSMIENGNLDCIPQAYEANIPFILRYLIDRDLSTGS 231

Query: 507  WLSISK------------------FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE 548
            W+SI K                  F      QR+S C+ E+ +    D+ V  SS   A 
Sbjct: 232  WVSIPKQKSYIRLGGQEFDFKDAGFVRISPFQRISSCQIEMDLFY-DDLIVLGSSGKWAT 290

Query: 549  VPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +PP+                   I+S  + C  ++ +  P    E  K  ++   +VV  
Sbjct: 291  LPPI------------------RILSFDIECITESGVGFP----EPHKDSVIQISSVVTL 328

Query: 609  LDGG------IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
            LD        IF +   KE     S A + V   ES E+ +L      L  LD DV+ G+
Sbjct: 329  LDSPESICNVIFTL---KECA---SVAEAFVFWFES-EKDMLLAWKDFLLALDPDVITGY 381

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGSGASPGIMSCIA 720
            N   FD++ LL RA++ ++    +    RL ++++     R     FG+  S  I   I 
Sbjct: 382  NCINFDMNYLLERAKLFQLNDFFF--FTRLAKTKITSKDTRFSSRAFGTHESKLIN--IE 437

Query: 721  GRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEY 778
            GR+L D     R   +  SYSL  ++ T   K++KE   + +++  Q    E+   +  Y
Sbjct: 438  GRILWDILETIRREHKLKSYSLNYVS-TNFLKEQKEDVHYSMIRGLQDGNPETRKRIAIY 496

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
               D+ L + LM HL + P   ++  ++G      L   +  +V   +L   ++  +++P
Sbjct: 497  CLKDSILPLRLMKHLKLFPNIIEMARVTGTTIDILLSRGQQIKVTSQILRKCKSTNFLMP 556

Query: 839  DKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLE 898
                        K +S                   D D              Y G  VLE
Sbjct: 557  ----------TVKNQS-------------------DGDNQ------------YEGATVLE 575

Query: 899  PKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPHLP-------SS 945
            P KG Y   I  LDF SLYPSI+  +NIC++T      ++  P+ L    P       SS
Sbjct: 576  PLKGFYKDPISTLDFASLYPSIMIAHNICYSTLIPPLNLKNVPEDLRKTSPTGHSFVLSS 635

Query: 946  KTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLG-FSNS 1003
               G+LP +++ L+  R+  K  M+ A+    I  L+ +Q ALK +ANS+YG  G  +  
Sbjct: 636  VRKGILPLIVEELIAARKKAKKEMEEATDPTLISILNGRQLALKTSANSVYGYTGAVAGG 695

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSGIDDIA 1055
            +     L+  IT  GR ++  T + V+         + + +V+YGDTDS+MI  G+ DI 
Sbjct: 696  QLPCLELSTSITSYGRAMIDITKNEVEKIYRKENGYSADAKVVYGDTDSVMIQFGVSDIG 755

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +    ++K + K ++++ + +Y   LL+ KK+YA   V FK+   +E I+ KG
Sbjct: 756  EAMKLGLEAATSISKLFVKPIKLEFEKVYCPFLLMNKKRYAG--VLFKNPQFHERIDCKG 813

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD  LL ++V D  L +IL ++  E   +   N    V  D+   ++ L   V++
Sbjct: 814  IETVRRDNCLLVQKVVDTVLKKILVDKDVEAAKQYTRN----VISDLLKNKIDLSLLVVS 869

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K+L K       A    HV++A RLK     +  + GD V Y++          + G  Q
Sbjct: 870  KSLGKDDYTAKLA----HVELAKRLKLRDPGSAPNIGDRVSYVVI-------KGAKGQPQ 918

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSK 1294
              R  D L   +    ID  +Y       V+             R+ + +  DP K  S 
Sbjct: 919  YDRAEDPLYVLENNLAIDTQHYVDTLKSSVI-------------RVFEGVMKDPEKLFSG 965

Query: 1295 P---SETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAV----CSSICMSV 1347
                S T+ S    +L   V    +   C+ +I   P C    DC       CS +   +
Sbjct: 966  SHTRSVTVLSVTGGALAGFVKKGLQCMNCKTIIKEGPLCK---DCSKQENMECSVLINKL 1022

Query: 1348 SEKPSKPETEYN-FWRTLRCPKC 1369
             E   K E EYN  W   +C +C
Sbjct: 1023 HEFREK-EIEYNSLWT--QCQRC 1042


>gi|194873189|ref|XP_001973157.1| GG13508 [Drosophila erecta]
 gi|190654940|gb|EDV52183.1| GG13508 [Drosophila erecta]
          Length = 1092

 Score =  190 bits (483), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 182/687 (26%), Positives = 317/687 (46%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD   L++RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLINRAAHLKVKN--FEYL 405

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + K +I+P               ++ G +++  
Sbjct: 521  RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 566  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLREQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  EMTKNEVESHYSQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDA--YDKMDCKGIETVRRDNSPLVANLMNSC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V  +     +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G + E +
Sbjct: 941  TYYLEQQLSKPLLRIFEPILGDNAESI 967


>gi|71412800|ref|XP_808567.1| DNA polymerase delta catalytic subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70872801|gb|EAN86716.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi]
          Length = 1029

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 195/804 (24%), Positives = 356/804 (44%), Gaps = 116/804 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   + G +WL+I   S C A +R S C+ E+   S + ++   +      + P  + 
Sbjct: 177  FIVDNGISGCNWLTIPVGSFCTATERTSTCQIELCC-SHEAVQNHDAVGQYLSIAPFRIL 235

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            +I++     K +F   ++ + ++  +  C +      P           L+      K  
Sbjct: 236  SIDIECQGKKGLFPDPEE-DPVIQIANHCINYGNEAEP-----------LTRTIFTLKSC 283

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G I               AG+ V   E+ E  LL  +   +  +D D+  G+NIS FD  
Sbjct: 284  GPI---------------AGARVCSYETEEEMLLEWVRF-VKAIDPDIFTGYNISNFDFP 327

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
             LL+R    +   +      ++    +P+ +K ++    G        + GR++ D  + 
Sbjct: 328  YLLNRGAALKTNDAFHYWGRQINERTVPREKKFQSK-QMGNREYTELTLEGRVILDVMVV 386

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSME 788
             +   +  SYSL  +++  L + +++V  H ++   Q  + E+   L  Y   DA L ++
Sbjct: 387  IQRDYKLRSYSLNAVSQHFLGEQKEDVH-HSIIADLQQGSEETRRRLAVYCLKDALLPVK 445

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L V+    ++  ++G      L+  +  +V  ++L   +AK  +VP          
Sbjct: 446  LLERLMVVVNNVEMARVTGVPIEWLLERGQQIKVFSMMLRKAKAKDLLVP---------- 495

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
             A + S  G + R                             Y G  V+EP KG Y+  I
Sbjct: 496  -AVEYSGGGGDQR----------------------------GYEGATVIEPLKGFYNCPI 526

Query: 909  LLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPHLPSSKT-------TGVLPELL 955
            + LDF SLYPSII  +N+C++T      + R P  ++   P+  T        G+LPE+L
Sbjct: 527  VTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYPAEMLSRTPTGDTFVKKELFPGILPEVL 586

Query: 956  KNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            ++L+  R+  K+ MK      L+ + L+ +Q ALK++ANS+YG  G    +     ++  
Sbjct: 587  QDLLAARKRAKSLMKDVPMESLEYKVLNGRQLALKISANSVYGFTGAQVGKLPCLEVSSS 646

Query: 1014 ITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGKVI 1065
            +T  GR ++  T  LV++    ++V+YGDTDS+MI    D+       +  A        
Sbjct: 647  VTAYGRLMIDQTKFLVESLYPGVKVVYGDTDSVMIKCLTDEKGTEKERLEYAMTFGKGAA 706

Query: 1066 QEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
            +EV+  +   ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD   
Sbjct: 707  EEVSSHFLNPIKLEFEKVYFPYLLMNKKRYAG--LLWTNTERYDKLDAKGIETVRRDNCP 764

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L   V    L++IL +RS +  VE +  ++     D+   ++ +   VITKT +K    Y
Sbjct: 765  LVASVISGVLNRILIQRSVDSAVEFVKGTI----RDLLLNRLDISHLVITKTFSKAENEY 820

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
              A  Q HV +  R+++   ++  + GD V Y+I         ++ G     R  D +  
Sbjct: 821  AGA--QAHVALVERMRKRDPASAPNIGDRVAYVIV-------RAAKGAKAYERSEDPIYV 871

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRL 1268
             +    ID  YY   Q+ P + R+
Sbjct: 872  LENNIPIDTQYYLEHQLAPPLLRV 895


>gi|181622|gb|AAA35768.1| DNA polymerase delta [Homo sapiens]
          Length = 1107

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 179/659 (27%), Positives = 305/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+ G+    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGGEAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|11067381|ref|NP_067694.1| DNA polymerase delta catalytic subunit [Rattus norvegicus]
 gi|3913500|sp|O54747.1|DPOD1_RAT RecName: Full=DNA polymerase delta catalytic subunit
 gi|2687728|emb|CAA10946.1| DNA polymerase delta, catalytic subunit [Rattus norvegicus]
          Length = 1103

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 177/666 (26%), Positives = 304/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 370  EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRD 429

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 430  SSFQSRQV---GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKE 483

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 484  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 542

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L  +R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 543  L--SRGQQVKVV---------------------SQLLRQAMREGLLMPVVKTEGGED--- 576

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 577  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + +S   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 620  PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ NS+YG  G    +     +++ +T  GR+++  T  LV+    LE 
Sbjct: 680  QVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 740  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 800  ISKKRYAGLLFSSRSDA-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 858

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 859  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 912

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            + GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 913  NLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 965

Query: 1269 CASIEG 1274
               I G
Sbjct: 966  FEPILG 971


>gi|324120768|dbj|BAJ78775.1| DNA polymerase delta catalytic subunit [Ctenocephalides felis]
          Length = 1002

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 197/743 (26%), Positives = 334/743 (44%), Gaps = 118/743 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VLC +  E  LL      + +LD DV  G+NI+ FD   LL RA   +V +  +  
Sbjct: 262  VGSQVLCYDKEEE-LLEAWAAFIRELDPDVFTGYNINNFDFPYLLRRAAHLKVKN--FDF 318

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSL 742
            +GR+ R +   L++  T+  S   G          GR+  D  L    LLR+    SY+L
Sbjct: 319  LGRV-RDKKSVLKE--TVLQSKQMGRRENYAINFEGRVPFDLLLV---LLRDYKLRSYTL 372

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
              ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    
Sbjct: 373  NAVSFHFLQEQKEDVH-HSIISDLQAGNEQTRRRLAMYCLKDAYLPLRLLNKLMCIVNYM 431

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            ++  ++G   G  L   +  +V   LL   +   Y++P   TY          S  G E+
Sbjct: 432  EMARVTGVPLGCLLTRGQQIKVVSQLLRKSKEAGYLMP---TY----------SGQGSEE 478

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
            +                             Y G  V+EP++G Y   +  LDF SLYPSI
Sbjct: 479  Q-----------------------------YEGATVIEPRRGYYADPVSTLDFASLYPSI 509

Query: 921  IQEYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            +  +N+C+TT                V R+P   +  + SS   G+LPE+L++L+  R+ 
Sbjct: 510  MMAHNLCYTTLIQPGQKEKLGLTDDQVTRTPSNNL-FVKSSVRKGLLPEILESLLSARKK 568

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  ++      K   LD +Q ALK++ANS+YG  G    R     ++  +T  GR ++ 
Sbjct: 569  AKADLRDEKDPFKRSVLDGRQLALKISANSVYGFTGAQVGRLPCLEISGSVTAYGRTMIE 628

Query: 1024 STVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+    +         VIYGDTDS+M++ G+  + ++  +  +  + V++K+ + 
Sbjct: 629  QTKQEVERKYTIANGYESDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEFVSQKFIRP 688

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +     D   Y+ I+ KG++ VRRD S L   + + CL
Sbjct: 689  IKLEFEKVYFPYLLINKKRYAGLYYTRTDK--YDKIDCKGIETVRRDNSPLVANMMNMCL 746

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +IL  R  E  VE       +V  D+   ++ + + VITK L+K       A  Q HV+
Sbjct: 747  QKILVHRDPEGAVEYAK----QVISDLLCNKIDISQLVITKELSKSDY----AAKQAHVE 798

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A ++K+    T    GD VPY++C     ++  +     +A  P  +   +    ID  
Sbjct: 799  LANKMKKRDAGTAPKLGDRVPYVLC-----AAAKNTPAYMKAEDP--IYVLENSIPIDSA 851

Query: 1255 YYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDE 1314
            YY   Q+   + R+   I G   E L   L  D ++     +++M++    +L      +
Sbjct: 852  YYLENQLSKPLLRIFEPILGDKAESL--LLRGDHTR-----TKSMATSRVGALSAFTKKK 904

Query: 1315 ERYRGCEPLILS-------CPSC 1330
            E   GC+ L+ +       CP C
Sbjct: 905  EACIGCKALLPAGYEKGALCPHC 927


>gi|24664937|ref|NP_524099.2| DNA-polymerase-delta [Drosophila melanogaster]
 gi|13124718|sp|P54358.2|DPOD1_DROME RecName: Full=DNA polymerase delta catalytic subunit
 gi|7294203|gb|AAF49555.1| DNA-polymerase-delta [Drosophila melanogaster]
 gi|21064603|gb|AAM29531.1| RE60511p [Drosophila melanogaster]
          Length = 1092

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 183/687 (26%), Positives = 317/687 (46%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD   LL+RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRN--FEYL 405

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + K +I+P               ++ G +++  
Sbjct: 521  RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 566  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  EMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDT--YDKMDCKGIETVRRDNSPLVANLMNSC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V  +     +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G + E +
Sbjct: 941  TYYLEQQLSKPLLRIFEPILGDNAESI 967


>gi|393226323|gb|EJD34100.1| putative delta DNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 961

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 187/683 (27%), Positives = 309/683 (45%), Gaps = 97/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AGS++L   + E  LL+     L  +D DV++G+N + FDL  LL RA    V    ++K
Sbjct: 221  AGSDILSF-NEEVELLSAWRNFLGTVDPDVIIGYNTTNFDLPYLLKRANARGVQG--FNK 277

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GRL            +   SG        I GRL  D F   +   +  +YSL  ++  
Sbjct: 278  LGRLLHIGTSVKEVHSSSRASGDRDSKECNINGRLQFDIFQYMQKEYKLRTYSLNAVSAK 337

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  T +S   L  Y   DA+L   LM  L       ++  ++
Sbjct: 338  FLGEQKEDVH-HSIISELQNGTPDSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVT 396

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKK--YIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            G  +   L  +R Q+++ +     RAK+  Y++P          M +Q S+         
Sbjct: 397  GVPFNFLL--SRGQQIKVISQLMRRAKEDGYLIP---------AMKEQSSDD-------- 437

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+ P  G Y   I  LDF+S+YPSI+  +
Sbjct: 438  -------------------------QYEGATVIPPTTGYYKDPIATLDFSSMYPSIMIAH 472

Query: 925  NICFTTV-----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            NIC+TT+                 +++P G     P+ +  GVLP +L++L+  R+ VK 
Sbjct: 473  NICYTTMINRATISRLRLVLDVDYKQTPQGTFFVNPTRR-KGVLPIILEHLLSARKRVKA 531

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K   LD +Q ALK++ANS+YG  G S        ++   T  GRE++  T 
Sbjct: 532  DLKNETDPFKRAVLDGRQLALKISANSVYGFPGASFGHLPCTDISSTTTAYGREMIAKTK 591

Query: 1027 DLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
             +V+++  +E        VIYGDTDS+M+  G  D+A    +  +    V   +   +++
Sbjct: 592  SVVEDHYRIENGFEHDARVIYGDTDSVMVDFGPSDVATCMRLGAEAAHLVTTHFVDPVKL 651

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L+ E  D  L+++
Sbjct: 652  EFEKVYWPYLLVNKKRYAGLYWTKPD--KYDKLDAKGLESVRRDNCCLASETMDKVLNKM 709

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ER  E  +  +     K+  ++   ++ L + VITKTL K          QPHV+ A 
Sbjct: 710  LVERDPEGALAYVK----KIVNNLLQDRIDLSQLVITKTLAK----MDYVSKQPHVESAR 761

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+K+    +    GD V Y+I   +GT +     +  RA  P  + + +    ID +YY 
Sbjct: 762  RMKKRDAGSAPGIGDRVAYVIV--RGTKNAR---VYDRAEDPSYVLEHNIP--IDTEYYL 814

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
            + Q+   + R+   + G   + L
Sbjct: 815  NNQLATPLMRIFEPVLGARAQGL 837


>gi|2827903|gb|AAB99910.1| DNA polymerase delta catalytic subunit [Mus musculus]
          Length = 1105

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 304/666 (45%), Gaps = 95/666 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  ---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++   +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFKKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+
Sbjct: 915  SLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 967

Query: 1269 CASIEG 1274
               I G
Sbjct: 968  FEPILG 973


>gi|405119357|gb|AFR94130.1| delta DNA polymerase [Cryptococcus neoformans var. grubii H99]
          Length = 1059

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 203/821 (24%), Positives = 357/821 (43%), Gaps = 141/821 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  K+ G +W+SI   ++       + S C+ EI  +  KD+   +      ++ P+ 
Sbjct: 208  FMIDTKIVGMNWVSIPGGRYDLLEGGNKKSQCQIEILCNY-KDLISHAPENEWLDIAPLR 266

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            V + +++    K      +V+ ++  + +     +           KP + + FT+    
Sbjct: 267  VLSFDIECAGRKGIFPEANVDPVIQIAAMVTRHGE----------SKPFVRNVFTL---- 312

Query: 610  DGGIFPMGFNKEATDRNSKA---GSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNIS 665
                            N+ A   GS VL  +   R LL  R  +E   +D D+++G+NIS
Sbjct: 313  ----------------NTCAHIVGSQVLEFKDERRLLLEWRKFVE--TVDPDMIIGYNIS 354

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
             FDL  LL RA+  ++P   ++ +GRL+  R+E+ +       +G   S  +   + GRL
Sbjct: 355  NFDLPYLLDRAKALKIPD--FAFLGRLRNVRTEVKETHFSSKAYGQRDSKAVN--MEGRL 410

Query: 724  LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGET 781
              D     +   +  SY+L  +    L + +++V  H ++   Q  T +S   L  Y   
Sbjct: 411  QLDILQVMQRDYKLRSYTLNAVCAQFLGEQKEDVH-HSIITELQNGTADSRRRLAVYCLK 469

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L   LM  L       ++  ++G  +   L   +  +V   L        Y++P   
Sbjct: 470  DAYLPQRLMDKLMCFVNYTEMARVTGVPFNYLLSRGQQIKVVSQLYRNAADAGYVIP--- 526

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                                    L +E ++                  Y G  V+EP K
Sbjct: 527  -----------------------ALKSEGSD----------------EQYEGATVIEPSK 547

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFT------TVERSPDGLVP-----HLP------- 943
            G YD  I  LDF SLYPSI+  +N+C+T      T+ER    LV      H P       
Sbjct: 548  GFYDVPITTLDFASLYPSIMMAHNLCYTTLLDRGTIERL--KLVEGEDYVHTPNNDFFAT 605

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            S +  G+LP +L+NL+  R+  K  +K      K   LD +Q ALK++ANS+YG  G + 
Sbjct: 606  SKRRKGLLPHILENLLAARKRAKQDLKIEKDPFKRAVLDGRQLALKVSANSVYGFTGATI 665

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDI 1054
             +     ++  +T  GR+++  T   V+   ++        +V+YGDTDS+M+  G  D+
Sbjct: 666  GKLPCLAISSSVTAYGRQMIELTKKEVEAEYSMKNGYDHDAKVVYGDTDSVMVRFGCPDL 725

Query: 1055 AKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
              A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ K
Sbjct: 726  PTAMRLGAEAADLVSGKFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTK 783

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            G++ VRRD   L   V + CL ++L +R  +   + + +++     D+   ++ + + VI
Sbjct: 784  GIETVRRDNCRLVSTVIETCLFKMLIDRDVKGAEDYVKDTI----ADLLQNKIDMSQLVI 839

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK L K       A  Q HV++  R+++    +  S GD V Y+I   +G       G A
Sbjct: 840  TKALAKADY----AAKQAHVELVERMRKRDAGSAPSLGDRVAYVIV--KGVK-----GAA 888

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 889  AYEKSEDPLYVLEHNVPIDTRYYLENQLSKPLMRIFEPILG 929


>gi|300707422|ref|XP_002995919.1| hypothetical protein NCER_101069 [Nosema ceranae BRL01]
 gi|239605160|gb|EEQ82248.1| hypothetical protein NCER_101069 [Nosema ceranae BRL01]
          Length = 977

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 176/652 (26%), Positives = 312/652 (47%), Gaps = 91/652 (13%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGSGAS 712
            + D+++G+N+ GFD+  +L R     +    ++K+GR ++    K  +   R + GS ++
Sbjct: 274  NPDLILGYNLKGFDIPYILERGTTLNIED--FNKLGRTQKPCKAKDAVFSSRQV-GSLST 330

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLE 770
            P I   I GR++ D     R   +  SYSL  ++   L + +++V PH+ +   Q    +
Sbjct: 331  PEI--TIEGRIVFDLMQIIRREHKLRSYSLNSVSLHFLQEQKEDV-PHNSMHDLQEGNKD 387

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
            +   +  Y   D  L + L   L++L    +L  + G             +V  L+  A 
Sbjct: 388  TRKRIASYCLKDTILPLRLFNKLNILINYTELARVMGVPLEYFSSRGVGIKVLTLIYRAA 447

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
                Y++P                   V D  VE         DND++            
Sbjct: 448  AENDYLIP-------------------VLD--VE---------DNDST------------ 465

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-----------ERSPDGLV 939
            Y GG V++P +G Y + I +LDF+SLYPSI+   N+C++T+            ++P    
Sbjct: 466  YEGGFVMDPMRGFYPQPIAVLDFSSLYPSIMISRNLCYSTLLTKEQYDKFGGTKTPTN-- 523

Query: 940  PHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGC 997
             +   SK   G+LP++L NL+  R+  K  M   S   I+  L+ +Q A+K+ ANS+YG 
Sbjct: 524  NYFVDSKVKQGLLPKVLINLLASRKATKKEMNAESDPGIKACLNARQTAIKVCANSIYGF 583

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHS 1049
             G +  +     +++  T  GRE++  T +++++    E        VIYGDTDS+MI+ 
Sbjct: 584  TGANTGKLPCVEISQSTTSFGREMIAFTKNIIESTFCKEKGYSHDSIVIYGDTDSVMINF 643

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              +D+ +   +A ++ + V  K+ K + ++ + +Y   LL+ KK+YA + +      P +
Sbjct: 644  KENDMKRVFEMASEISEFVTTKFIKPVSLEFEKVYYPYLLINKKRYAGL-IYNNPNTPSK 702

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             I+ KG++ VRRD   L KEV + CL++IL ++     VE     + K+ +D+  G++ L
Sbjct: 703  -IDTKGIETVRRDNCNLVKEVIETCLNKILYDKD----VEGAKTYVKKIVQDLYQGKIDL 757

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
             + VI+K++TK  + Y  A  Q HV++A ++++ G  +  + G+ V YI+        G 
Sbjct: 758  SQLVISKSITKAGDKY--ASKQAHVELAEKMRKRGDESAGALGNRVAYIM-----VEKGK 810

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             V    +A  P  + + +    ID +YY  QQ+   + RL   I     E L
Sbjct: 811  KVAGYDKAEDPVYVLEHN--LPIDTEYYIEQQLAKPLHRLFEPIVDNVSELL 860


>gi|449547887|gb|EMD38854.1| hypothetical protein CERSUDRAFT_112578 [Ceriporiopsis subvermispora
            B]
          Length = 1085

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 182/676 (26%), Positives = 304/676 (44%), Gaps = 97/676 (14%)

Query: 630  GSNVLC-CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            GS VL   + SE  L  R  +E  ++D DV+ G+N++ FD+  LL RA+  +  +  +  
Sbjct: 344  GSQVLSYSDESEMLLAWRAFVE--QVDPDVITGYNMANFDIPYLLDRAKALK--TDRFPM 399

Query: 689  IGRL--KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+   ++   +       FG   S    + + GRL  D     +   +  SY+L  + 
Sbjct: 400  LGRMINMKAATKETHFSSKAFGQRDSKD--TALDGRLQIDMLQYMQREHKLRSYTLNSVC 457

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q  T ES   L  Y   DA+L   LM  L       ++  
Sbjct: 458  AQFLGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLMDKLMCFINYTEMAR 516

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   ++ +V   L      + Y++P                          
Sbjct: 517  VTGVPFNYLLSRGQSIKVLSQLFRRANEEGYLIP-------------------------- 550

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
             L  E ++                  Y G  V+EPKKG YD  I  LDF+SLYPSI+  +
Sbjct: 551  SLKGEGSD----------------EQYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAH 594

Query: 925  NICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT+  + + D +           P+    + S+K  G+LP +L++L+  R+  K  
Sbjct: 595  NLCYTTLLDKNTIDRMNLVKDIDYIQTPNNDFFVKSTKRKGLLPTILEDLISTRKRAKAD 654

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T  
Sbjct: 655  LKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEQTKR 714

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+           N +VIYGDTDS+M+  G  D+A+  A+  +    V  K+ K ++++
Sbjct: 715  EVEAEFSSDNGHKHNAKVIYGDTDSVMVKFGPTDLAEVMALGAQAADFVTSKFIKPIKLE 774

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V + CL ++L
Sbjct: 775  FEKVYFPYLLISKKRYAGLYWTRPD--KYDKMDTKGIETVRRDNCRLVSTVIETCLHKLL 832

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R     V        ++  D+   +V + + VITK L K       A  Q HV++A R
Sbjct: 833  IDRD----VRGAEEYTKQIISDLLQNRVDMSQLVITKALAKADY----AAKQAHVELAER 884

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +KQ    +  + GD V Y+I   +G       G A   +  D +   +    ID  YY  
Sbjct: 885  MKQRDAGSAPALGDRVAYVII--KGVK-----GAAAYEKSEDPIYVLENNIPIDTKYYLE 937

Query: 1259 QQIHPVVSRLCASIEG 1274
             Q+   + R+   I G
Sbjct: 938  NQLSNPLMRIFEPILG 953


>gi|410902099|ref|XP_003964532.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Takifugu
            rubripes]
          Length = 1104

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 180/679 (26%), Positives = 313/679 (46%), Gaps = 93/679 (13%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS +LC  + E  LL      L  +D D++ G+NI  FD   LL+RA   +V  + +
Sbjct: 366  SIVGSQILCF-TQETKLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAATLKV--NPF 422

Query: 687  SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLT 743
              +GR++ S+             G        + GR+  D     + LLR+    SY+L 
Sbjct: 423  PYLGRIRNSKSVLRDLNFQSKQMGRRENKTMNMEGRVQFDLL---QVLLRDYKLRSYTLN 479

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    +
Sbjct: 480  AVSFHFLQEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYME 538

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L   +  +V   LL     +  ++P     V +T+        G ED 
Sbjct: 539  MARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKTE--------GGED- 584

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                         Y G  V+EP+KG Y   I  LDF+SLYPSI+
Sbjct: 585  -----------------------------YTGATVIEPEKGYYSIPIATLDFSSLYPSIM 615

Query: 922  QEYNICFTTV---ERSPDGLVPH-----------LPSSKTTGVLPELLKNLVQRRRMVKT 967
              +N+C+TT+    +  D L P            + SS   G+LPE+L+NL+  R+  K 
Sbjct: 616  MAHNLCYTTLLQNTQDKDSLSPEDFIKTPTGNFFVKSSVRKGLLPEILENLLSARKRAKA 675

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T 
Sbjct: 676  ELKKETDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTK 735

Query: 1027 DLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
             LV++   +        +VIYGDTDS+M+  G+  + +A +I  +  + V+  +   +++
Sbjct: 736  QLVESKYTISNGYQADAKVIYGDTDSVMVKLGVATVNEAMSIGREAAEWVSSHFISPIKL 795

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + CL +I
Sbjct: 796  EFEKVYYPYLLINKKRYAGLYFS-SSADTHDKMDCKGIETVRRDNCPLVANLINTCLQKI 854

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R  +  V+       +V  D+   ++ + + VITK LT+  + Y  A  Q HV++A 
Sbjct: 855  LIDRDPQGAVDHAK----EVISDLLCNRIDISQLVITKELTRTAQEY--AGKQAHVELAE 908

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD VPY+I       + ++ G A   +  D +   +    ID  YY 
Sbjct: 909  RMRKRDAGSAPNLGDRVPYVI-------TKAAKGAAAYMKSEDPIYVLENSIPIDTQYYL 961

Query: 1258 SQQIHPVVSRLCASIEGTS 1276
             QQ+   + R+   I G S
Sbjct: 962  EQQLSKPLLRIFEPILGES 980


>gi|190340064|gb|AAI63875.1| Polymerase (DNA directed), delta 1, catalytic subunit [Danio rerio]
          Length = 1105

 Score =  190 bits (482), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 209/840 (24%), Positives = 366/840 (43%), Gaps = 164/840 (19%)

Query: 496  FLVKRKVKGPSWLSISKF------------SSCPAPQRVSWCKYEITVDSPKDIRVSSSS 543
            F+V   V G  W+ + K             +    P +VS C+YE+      D+   S  
Sbjct: 247  FMVDSNVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEV------DVAWDSLI 300

Query: 544  KHVAE-----VPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
             H AE     + P+ V + ++     K VF +  +V+ ++  + +   + +         
Sbjct: 301  SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPE-PEVDPVIQIASMVQRQGE--------- 350

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
             K+P + + FT+                     S  GS +LC  + E+ +L      +  
Sbjct: 351  -KEPFIRTVFTL-----------------QSCASIVGSQILCF-TQEKLMLQSWAEFMRT 391

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D D++ G+NI  FDL  LL+RA   +V  +M+  +GR       LK S     + GR  
Sbjct: 392  VDPDIITGYNIQNFDLPYLLNRAATLKV--NMFPYLGRVWGCKSVLKDSSFQSKQMGR-- 447

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                        + GR+  D     + LLR+    SY+L  ++   L + +++V  H ++
Sbjct: 448  -----RENKTINMEGRVQFDLL---QVLLRDYKLRSYTLNAVSFHFLQEQKEDV-QHSII 498

Query: 764  KMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L  +    ++  ++G      L   +  +
Sbjct: 499  TDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMARVTGVPLTYLLSRGQQIK 558

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V   LL     +  ++P     V +T+        G ED                     
Sbjct: 559  VVSQLLRQAMKQDLVMP-----VVKTE--------GGED--------------------- 584

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP+KG Y   I  LDF+SLYPSI+  +N+C+TT+ +        
Sbjct: 585  ---------YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLG 635

Query: 934  -SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
              PD  +        + SS   G+LPE+L+NL+  R+  K  +K  +   K Q LD +Q 
Sbjct: 636  LGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQL 695

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------V 1037
            ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   L+        V
Sbjct: 696  ALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGYQADAKV 755

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+  + +A     +  + V+  +   ++++ + +Y   LL+ KK+YA 
Sbjct: 756  IYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAG 815

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +         ++ ++ KG++ VRRD   L   + + CL  IL +R  +  V        +
Sbjct: 816  LYFS-SSAEHHDKMDCKGIETVRRDNCPLVANLINTCLQNILIDRDPDGAV----THAKE 870

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            V  D+   ++ + + VITK LT+  + Y  A  Q HV++A R+++    +  + GD VPY
Sbjct: 871  VISDLLCNRIDISQLVITKELTRTAQEY--AGKQAHVELAERMRKRDAGSAPNLGDRVPY 928

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +I         ++ G+A   +  D +   +    ID  YY  QQ+   + R+   I G S
Sbjct: 929  VII-------KAAKGVAAYMKSEDPIYVLENNIPIDTQYYLEQQLSKPLLRIFEPILGES 981


>gi|195019160|ref|XP_001984922.1| GH16758 [Drosophila grimshawi]
 gi|193898404|gb|EDV97270.1| GH16758 [Drosophila grimshawi]
          Length = 1095

 Score =  190 bits (482), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 183/681 (26%), Positives = 320/681 (46%), Gaps = 100/681 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC +  E  LL++    + ++D D+L G+NI+ FD+  LL+RA   +V  + +  +
Sbjct: 356  GSQVLCYDQ-ETQLLDKWAAFVREVDPDILTGYNINNFDIPYLLNRAAHLKV--NNFEYL 412

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLA 746
            GR++        +       G          GR+  D +L    LLR+    SYSL  ++
Sbjct: 413  GRIRNIRSVIKEQVLQSKQMGRRENHYVNFEGRVPFDLYLV---LLRDYKLRSYSLNAVS 469

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  
Sbjct: 470  YHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLGKLMAIVNYMEMAR 528

Query: 805  ISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            ++G      L   R Q+++ L  LL   + K +I+P   +Y                   
Sbjct: 529  VTGVPLESLL--TRGQQIKVLSQLLRKAKTKGFIMP---SYT------------------ 565

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                          +S +D +       Y G  V+EPK+G Y   I  LDF SLYPSI+ 
Sbjct: 566  --------------SSGSDEQ-------YEGATVIEPKRGYYADPISTLDFASLYPSIMM 604

Query: 923  EYNICFTTV----ERSPDGL----VPHLPSSK-------TTGVLPELLKNLVQRRRMVKT 967
             +N+C+TT+     +   GL    V   P++          G+LPE+L++L+  R+  K 
Sbjct: 605  AHNLCYTTLLLPGAKDKMGLRDDQVEQTPANNRFVKAELRRGLLPEILESLLAARKRAKN 664

Query: 968  WMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K Q LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T 
Sbjct: 665  DLKVETDSFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRVMIELTK 724

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
            + V+++         +  VIYGDTDS+M++ G+  + ++  +  +    V+ K+ + +++
Sbjct: 725  NEVESHYTRANGYENDAVVIYGDTDSVMVNFGVKTLERSMELGREAADLVSSKFVRPIKL 784

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL ++
Sbjct: 785  EFEKVYYPYLLINKKRYAGLYFTKPD--KYDKMDCKGIETVRRDNSPLVANLMNACLQKL 842

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ER+ +  V+       ++  D+   ++ + + VITK L K       A  Q HV++A 
Sbjct: 843  LIERNPDGAVDYAK----QIIADLLCNRIDISQLVITKELAKTDY----AAKQAHVELAA 894

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID +YY 
Sbjct: 895  KMKKRDAGTAPKLGDRVPYVIC-----AATKNTPAYQKAEDP--LYVLENSVPIDANYYL 947

Query: 1258 SQQIHPVVSRLCASIEGTSPE 1278
             QQ+   + R+   I G   E
Sbjct: 948  EQQLSKPLLRIFEPILGDKAE 968


>gi|89886293|ref|NP_001034899.1| DNA polymerase delta catalytic subunit [Danio rerio]
 gi|58615463|gb|AAW80296.1| DNA polymerase delta1 catalytic subunit [Danio rerio]
          Length = 1105

 Score =  190 bits (482), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 209/840 (24%), Positives = 366/840 (43%), Gaps = 164/840 (19%)

Query: 496  FLVKRKVKGPSWLSISKF------------SSCPAPQRVSWCKYEITVDSPKDIRVSSSS 543
            F+V   V G  W+ + K             +    P +VS C+YE+      D+   S  
Sbjct: 247  FMVDSNVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEV------DVAWDSLI 300

Query: 544  KHVAE-----VPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
             H AE     + P+ V + ++     K VF +  +V+ ++  + +   + +         
Sbjct: 301  SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPE-PEVDPVIQIASMVQRQGE--------- 350

Query: 594  WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYK 653
             K+P + + FT+                     S  GS +LC  + E+ +L      +  
Sbjct: 351  -KEPFIRTVFTL-----------------QSCASIVGSQILCF-TQEKLMLQSWAEFMRT 391

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D D++ G+NI  FDL  LL+RA   +V  +M+  +GR       LK S     + GR  
Sbjct: 392  VDPDIITGYNIQNFDLPYLLNRAATLKV--NMFPYLGRVWGCKSVLKDSSFQSKQMGR-- 447

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                        + GR+  D     + LLR+    SY+L  ++   L + +++V  H ++
Sbjct: 448  -----RENKTINMEGRVQFDLL---QVLLRDYKLRSYTLNAVSFHFLQEQKEDV-QHSII 498

Query: 764  KMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L  +    ++  ++G      L   +  +
Sbjct: 499  TDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMARVTGVPLTYLLSRGQQIK 558

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V   LL     +  ++P     V +T+        G ED                     
Sbjct: 559  VVSQLLRQAMKQDLVMP-----VVKTE--------GGED--------------------- 584

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP+KG Y   I  LDF+SLYPSI+  +N+C+TT+ +        
Sbjct: 585  ---------YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLG 635

Query: 934  -SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
              PD  +        + SS   G+LPE+L+NL+  R+  K  +K  +   K Q LD +Q 
Sbjct: 636  LGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQL 695

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------V 1037
            ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   L+        V
Sbjct: 696  ALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGYQADAKV 755

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+  + +A     +  + V+  +   ++++ + +Y   LL+ KK+YA 
Sbjct: 756  IYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAG 815

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +         ++ ++ KG++ VRRD   L   + + CL  IL +R  +  V        +
Sbjct: 816  LYFS-SSAEHHDKMDCKGIETVRRDNCPLVANLINTCLQNILIDRDPDGAVTHAK----E 870

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
            V  D+   ++ + + VITK LT+  + Y  A  Q HV++A R+++    +  + GD VPY
Sbjct: 871  VISDLLCNRIDISQLVITKELTRTAQEY--AGKQAHVELAERMRKRDAGSAPNLGDRVPY 928

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +I         ++ G+A   +  D +   +    ID  YY  QQ+   + R+   I G S
Sbjct: 929  VII-------KAAKGVAAYMKSEDPIYVLENNIPIDTQYYLEQQLSKPLLRIFEPILGES 981


>gi|310792587|gb|EFQ28114.1| DNA polymerase family B [Glomerella graminicola M1.001]
          Length = 1103

 Score =  189 bits (481), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 212/821 (25%), Positives = 359/821 (43%), Gaps = 137/821 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K+ G SW+    SK+   P  QR S C+ E  + S  D+         +++ P+ 
Sbjct: 247  FMVDCKIFGMSWVEAPASKYQVLPQSQRQSNCQIEAEI-SHLDLIAHKPVGEWSKMAPLR 305

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F +      I  A+VV  +  K           KP + + F +   
Sbjct: 306  IMSFDIECAGRKGIFPEATHDPVIQIANVVTRYGEK-----------KPFVRNVFCL--- 351

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D  S   +  +     E  +L+     L K+D D+L+G+NI+ FD
Sbjct: 352  ---------------DTTSPIVATQILDFEKEEKMLSEWQKFLIKVDPDILIGYNIANFD 396

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +VP    WS+I       MP  R   T F S   G      +   GRL 
Sbjct: 397  FPYLLDRAKHLKVPGFEYWSRI-----PSMPS-RAKETNFSSKQMGNRDSKATNTNGRLQ 450

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDA 783
             D     +      SY+L  +    L + +++V    + ++F  T ES   L  Y   DA
Sbjct: 451  LDLLQLVQRDYHLRSYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDA 510

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
            +L   LM  LS L    ++  ++G  +   L  +R Q+V+++  L      +K ++P+  
Sbjct: 511  YLPQRLMDKLSCLENYTEMARVTGIPFNFLL--SRGQQVKFISQLFRKALEQKLVIPN-- 566

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                       RS          E T+E                     Y G  V+EP +
Sbjct: 567  ----------MRS----------EGTDEQ--------------------YEGATVIEPTR 586

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PHLPSSKTT- 948
            G YD  I  LDF SLYPSI+Q +N+C+TT           +++  D +V P+  +  TT 
Sbjct: 587  GYYDVPIATLDFASLYPSIMQAHNLCYTTLVNKKAIEKFQLKKDDDYIVTPNGDTFVTTK 646

Query: 949  ---GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSR 1004
               G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +
Sbjct: 647  QRKGLLAQILEELLTARKQAKRELAMETDPFKKAVLNGRQLALKISANSVYGLTGATTGK 706

Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAK 1056
                 +A   T  GR+++  T + V+           + +VIYGDTDS+M+  G  D+ +
Sbjct: 707  LPCLEIASSTTSFGRQMIMKTKEEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKDLPE 766

Query: 1057 AKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGL 1115
            A     +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG+
Sbjct: 767  AMKFGEEAAAYVSSKFVKPIKLEFEKVYYPYLLINKKRYAG--LYWTKPEKYDKMDTKGI 824

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            + VRRD  LL + V +  L  IL ++  +   + + +++     D+   +V + K VITK
Sbjct: 825  ETVRRDNCLLVQTVIEKVLRMILIDQDVQGAQDYVKDTI----ADLLQNKVDMSKLVITK 880

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
             LTK  + Y  A  Q HV++A R+K+    +    GD V Y++          + G    
Sbjct: 881  ALTK--DDY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMI-------KGAAGSKNY 929

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
             +  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 930  EKSEDPIYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 970


>gi|320581797|gb|EFW96016.1| Catalytic subunit of DNA polymerase delta [Ogataea parapolymorpha
            DL-1]
          Length = 1102

 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 212/820 (25%), Positives = 356/820 (43%), Gaps = 142/820 (17%)

Query: 497  LVKRKVKGPSWLSISKFSSCPAP--QRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            +V  ++ G  WL     +  P P  + VS C+ E T+   KD+   +S      + P+ +
Sbjct: 255  MVDCRITGMGWLRAPAGTYTPVPPEKVVSTCQLEFTIHY-KDLVSHASEGKYLNMAPLRI 313

Query: 555  TAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
             + ++     K +F + +    I  A+VV    AK   P+       P + + FTV    
Sbjct: 314  LSFDIECAGRKGIFPEAEHDPVIQIANVV----AKAGDPV-------PFVRNVFTV---- 358

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                 P+             GS     ES E  LL +    + K+D DV++G+NI+ FD 
Sbjct: 359  -KSCAPI------------VGSETFSYESEEEMLL-KWKEFIVKVDPDVIIGYNIANFDF 404

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCD 726
              L++RA+   V    +    RLK S   K     T F S   G+    +  I GR+  D
Sbjct: 405  PYLINRARALGVHD--FPYFSRLKNS---KQEIKDTFFSSRAYGSRENKVVNIEGRMQLD 459

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   LN+ +++V  H ++   Q    E+   L  Y   DA+
Sbjct: 460  LLQFIQREYKLRSYTLNAVSAHFLNEQKEDV-QHSIITDLQNGNQETRRRLAVYCLKDAY 518

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L   L  L    ++  ++G  +   L   +  +V   L         ++P+     
Sbjct: 519  LPLRLAEKLMCLVNYTEMARVTGVPFSFLLSRGQQIKVISQLFRKCLDLDIVIPN----- 573

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                         ++   V E                         Y G  V+EP +G Y
Sbjct: 574  -------------IKSEGVNE------------------------EYEGATVIEPVRGYY 596

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDG---LVPHLPS 944
            D  I  LDF SLYPSI+  +N+C+T      TVER           +P+G   + PHL  
Sbjct: 597  DVPIATLDFASLYPSIMMAHNLCYTTLLNKQTVERLGLKQDEDYIVTPNGDMFVHPHL-- 654

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
                G+LP +L+ L+  R+  K  +K  +   K Q L+ +Q ALK++ANS+YG  G +  
Sbjct: 655  --RKGILPTILQELLAARKKAKQDLKKETDPFKKQVLNGRQLALKISANSVYGFTGATIG 712

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIA 1055
            +     ++  +T  GR ++  T   VQ + ++E        VIYGDTDS+M+  G  D+ 
Sbjct: 713  KLPCLAISSSVTAFGRVMIEQTKAEVQRHYSIENGYEYDAQVIYGDTDSVMVKFGHSDME 772

Query: 1056 KAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
                +  +    V+ K+K  ++++ + +Y   LL+ KK+YA +   + +   ++ ++ KG
Sbjct: 773  TCMRLGEEAAAYVSTKFKHPIKLEFEKVYFPYLLINKKRYAGLF--WTNPRKFDKMDTKG 830

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD   L + V    L  IL ER+    VE+    + K   D+   +V L + VI+
Sbjct: 831  IETVRRDNCRLVQNVITRVLELILEERN----VEAAEQFVKKTIADLLQNRVDLSQLVIS 886

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K L++  + Y  A  QPHV++A R+++    +  + GD V Y+I          + G   
Sbjct: 887  KALSR--QDY--AAKQPHVELAERMRKRDAGSAPTLGDRVAYVII--------KTAGDKN 934

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +  D L   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  YEKSEDPLYVLENSLPIDTKYYLENQLANPLTRIFEPILG 974


>gi|374325878|ref|YP_005084078.1| DNA polymerase II [Pyrobaculum sp. 1860]
 gi|356641147|gb|AET31826.1| DNA polymerase II [Pyrobaculum sp. 1860]
          Length = 785

 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 182/652 (27%), Positives = 305/652 (46%), Gaps = 116/652 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R +L   +  L + D DV+VG+N + FD   L  RA+   VP  +  ++G   +     
Sbjct: 211  DRGVLRSFVDALREFDPDVVVGYNSNKFDWPYLSERAKALGVPLRV-DRVGGAPQ----- 264

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT--QLNKDRKEV 757
                ++++G  +       + GR   D F    +       +L ++A+    + +D + +
Sbjct: 265  ----QSVYGHWS-------VVGRANVDLFNIVEEFPEIKLKTLDRVAEYFGVMRRDERVL 313

Query: 758  GP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P H + + ++       L +Y   D   +  L   L  LP   QL+++SG    +    
Sbjct: 314  IPGHKIYEYWRDESKRPLLRQYVVDDVKSTYGLAERL--LPFLIQLSSVSGLPLDQVAAA 371

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +   RVE++LL            ++ Y    KM +   N   E+R  E            
Sbjct: 372  SVGNRVEWMLL------------RYAY----KMGEVAPNR--EEREYE------------ 401

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV----- 931
                          Y G +VLEPK GLY+  +L+LDF+S+YP+++  YN+   T      
Sbjct: 402  -------------PYKGAIVLEPKPGLYND-VLVLDFSSMYPNVMMRYNLSPDTYLEPGE 447

Query: 932  ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLKIQQLDIQQ 984
               P G+     V H    +  G +P++L+ LV+ RR+ +  MK  S    + + LD +Q
Sbjct: 448  PEPPSGVYIAPEVGHRFRREPPGFVPQVLRQLVELRRLAREEMKRYSPDSPEYRVLDERQ 507

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALK+ AN+MYG +G+  +R+Y + +AE +T   R ILR  +D  +  L + V+YGDTDS
Sbjct: 508  KALKVMANAMYGYMGWVGARWYKREVAESVTAFARSILRDVIDYAK-RLGVVVVYGDTDS 566

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKD 1103
            + +  G D          K+++ V +KY  ++I +D  Y  +L  + KK+YA +    +D
Sbjct: 567  LFVKRGGD--------VEKLVKYVEEKY-GIDIKVDKDYSTVLFTEAKKRYAGL---LRD 614

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G     I+  G ++VR DWS L+KEV    +  IL  R   +    +   + +V + +++
Sbjct: 615  GR----IDIVGFEVVRGDWSELAKEVQLRVIELILKSRDAAEARRRVTQYVREVVDALKN 670

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             +  L+  VI KTL K  + Y      PH+  AL LK+ GY  G   G TV Y++   +G
Sbjct: 671  YRFDLDDLVIWKTLDKELDEY--KAYTPHLHAALLLKRRGYKVG--KGTTVGYVVV--KG 724

Query: 1224 TSSGSSVGIAQRARH---PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                    I++RA      D++KK      ID+DYY  +Q+ P   R+   I
Sbjct: 725  GEK-----ISERAVPYILVDDVKK------IDVDYYIERQVIPAALRIAEVI 765


>gi|358335780|dbj|GAA54399.1| DNA polymerase delta subunit 1 [Clonorchis sinensis]
          Length = 1128

 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 184/688 (26%), Positives = 309/688 (44%), Gaps = 108/688 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS V+C   +E+ LL    + + ++D D++ G+N   FDL  L++RA   +V S  ++ +
Sbjct: 374  GSQVVC-HKTEKELLEHWAMFVRQVDPDIITGYNTQNFDLPYLINRANHLKVDS--FAFL 430

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQL 745
            GR++  RS +  +       G   +    + I GR+  D   +  RD  LR  SY+L  +
Sbjct: 431  GRVRGARSTVRDVMTQSKQMGRRENK--FTNIEGRVQLDLLQILFRDYKLR--SYTLNAV 486

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H+V+   Q     +   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 487  SYHFLEEQKEDV-EHNVISDLQNGDAHTRRRLAVYCLKDAYLPLRLLDKLMCVVNNIEMA 545

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      +   +  +V   LL   R   +++P   TY                    
Sbjct: 546  RVTGVPLTYLITRGQQVKVISQLLRKAREHDFVLP---TY-------------------- 582

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                + ++G  Y G  VLEP KG Y++ I  LDF SLYPSI+  
Sbjct: 583  --------------------QSQQGDEYVGATVLEPIKGFYNEPIATLDFASLYPSIMMA 622

Query: 924  YNICFTT------------------VER---SPDGLV------PHLPSSKTTGVLPELLK 956
            YN+C+TT                  VER   SPD  +        + SS   G+LPE+L+
Sbjct: 623  YNLCYTTLMQVSNTPGGAAAGLNAFVERYNLSPDDYICTPTGAYFVKSSVHRGLLPEILE 682

Query: 957  NLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
             L+  R+  K  + K    L+ + LD +Q ALK++ANS+YG  G    +     ++  +T
Sbjct: 683  QLLSARKKAKADLAKETDPLRKRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISASVT 742

Query: 1016 QQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQE 1067
              GR ++  T + V+           N  VIYGDTDS+M   G+  +A+A  +  K  + 
Sbjct: 743  SFGRRMIDQTKEHVEGKFTRANGYAHNAAVIYGDTDSVMCKFGVSTVAEAMELGRKAAEI 802

Query: 1068 VNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLS 1126
            ++ ++   + ++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD S L 
Sbjct: 803  ISAEFPNPIRLEFEKVYFPYLLINKKRYAGLYFTKPDK--HDKMDCKGIETVRRDNSPLV 860

Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
              +   CL +IL  R     +         V  D+   ++ + + VI+K LTK  E Y  
Sbjct: 861  ANLIQACLERILIHRDPNSAITFAQG----VISDLLCNRIDISQLVISKELTKTDEEY-- 914

Query: 1187 AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGD 1246
            A  Q HV++A ++++    +    GD VPY+I    G +S      A   +  D L   +
Sbjct: 915  AGKQAHVELAAKMRKRDAGSAPHLGDRVPYVITAVGGKNS------ATYTKAEDPLYVLE 968

Query: 1247 GKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                ID  YY   Q+   + R+   I G
Sbjct: 969  HNVPIDTKYYLENQLANPLLRIFEPILG 996


>gi|85103616|ref|XP_961558.1| DNA polymerase delta catalytic subunit [Neurospora crassa OR74A]
 gi|18376276|emb|CAD21389.1| probable DNA-directed DNA polymerase III [Neurospora crassa]
 gi|28923105|gb|EAA32322.1| DNA polymerase delta catalytic subunit [Neurospora crassa OR74A]
          Length = 1104

 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 184/662 (27%), Positives = 307/662 (46%), Gaps = 107/662 (16%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L ++D D+++G+NI+ FD   LL RA+  +V     WS      R+ +  + K  T F S
Sbjct: 381  LEQVDPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWS------RTRVRSVAK-ETNFSS 433

Query: 710  ---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLK 764
               G      +   GRL  D   L  RD  LR  SY+L  +    L + +++V    + +
Sbjct: 434  KQMGNRDTKATNTNGRLQLDMLQLVQRDYQLR--SYTLNSVCSHFLGEQKEDVHHSMITE 491

Query: 765  MFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
            +F+ T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V+
Sbjct: 492  LFEGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVK 549

Query: 824  YL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            +L  L      +K ++P                       N+   ++E+           
Sbjct: 550  FLSQLFRKALEQKLVIP-----------------------NLRPESSEEQ---------- 576

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-- 933
                     Y G  V+EP +G YD  I  LDF SLYPSI+Q +N+C+TT      +ER  
Sbjct: 577  ---------YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWD 627

Query: 934  ---------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQ 983
                     +P+G +  + + +  G+L ++L+ L+  R+  K  +       K   L+ +
Sbjct: 628  LKKDEDYIVTPNGDM-FVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVLNGR 686

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL-------- 1035
            Q ALK++ANS+YG  G +N +     +A  +T  GR+++  T   V+    +        
Sbjct: 687  QLALKVSANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDA 746

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKY 1094
            +VIYGDTDS+M+  G  D+A+A  +     + V+ K+ K ++++ + +Y   LL+ KK+Y
Sbjct: 747  QVIYGDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRY 806

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A   + +     Y+ ++ KG++ VRRD  LL + V +  L  IL ++        + +++
Sbjct: 807  AG--LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAQAYVKDTI 864

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
                 D+   ++ + K VITK LTK  E Y DAK Q HV++A R+K+    +    GD V
Sbjct: 865  A----DLLQNKIDMSKLVITKALTK--ENY-DAK-QAHVELAQRMKKRDAGSAPGLGDRV 916

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             Y++          + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 917  AYVMV-------KGATGSKNFERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILG 969

Query: 1275 TS 1276
             +
Sbjct: 970  ET 971


>gi|395331770|gb|EJF64150.1| hypothetical protein DICSQDRAFT_81194 [Dichomitus squalens LYAD-421
            SS1]
          Length = 1083

 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 186/677 (27%), Positives = 304/677 (44%), Gaps = 99/677 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL   + E  LL R    + ++D DV++G+NIS FD   LL RA+  +  +S +  +
Sbjct: 342  GSQVLSF-TDEAELLVRWREFIEEVDPDVIIGYNISNFDFPYLLDRARALK--ASKFPYL 398

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
            GR+   +        +    G      + + GRL  D     +   +  SY+L  +    
Sbjct: 399  GRIANKQTVTKDTHFSSKAFGQRDSKETVLDGRLQIDILQYMQREYKLRSYTLNSVCAHF 458

Query: 750  LNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H V+   Q  T ES   L  Y   DA+L   LM  L       ++  ++G
Sbjct: 459  LGEQKEDVH-HSVITELQNGTPESRRRLAVYCLKDAYLPQRLMDKLMCFINYTEMARVTG 517

Query: 808  NLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
              +   L  AR Q ++ L  L        Y+VP                           
Sbjct: 518  VPFNYLL--ARGQSIKVLSQLFRKANDDGYVVP--------------------------A 549

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
            L  E ++                  Y G  V+EPKKG YD  I  LDF+SLYPSI+  +N
Sbjct: 550  LKGEGSD----------------EQYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHN 593

Query: 926  ICFT------TVERSPDGLV--------PH----LPSSKTTGVLPELLKNLVQRRRMVKT 967
            +C+T      TV+R   GLV        P+    + SS+  G+LP +L++L+  R+  K 
Sbjct: 594  LCYTTLLDKATVDRL--GLVRDVDYVQTPNNDLFVKSSRRKGLLPTILEDLISARKRAKA 651

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T 
Sbjct: 652  DLKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRQMIEKTK 711

Query: 1027 DLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+        ++ +  VIYGDTDS+M+  G  D+     +  +    V  K+ K +++
Sbjct: 712  QEVEAEYCIANGHDHDATVIYGDTDSVMVRFGPTDLPTVMRLGSEAADFVTGKFIKPIKL 771

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V + CL ++
Sbjct: 772  EFEKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTKGIETVRRDNCRLVSTVIETCLHKL 829

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R     V++    + +V  D+   ++ + + VITK L K       A  Q HV++A 
Sbjct: 830  LIDRD----VKAAEEYVKQVISDLLQNRIDMSQLVITKALAKADY----AAKQAHVELAE 881

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+KQ    +  + GD V Y+I   +G       G A   +  D +   +    ID  YY 
Sbjct: 882  RMKQRDAGSAPALGDRVAYVII--KGIK-----GAAAYEKSEDPIYVLENNIPIDTKYYL 934

Query: 1258 SQQIHPVVSRLCASIEG 1274
              Q+   + R+   I G
Sbjct: 935  DNQLSNPLMRIFEPIMG 951


>gi|402223554|gb|EJU03618.1| hypothetical protein DACRYDRAFT_93925 [Dacryopinax sp. DJM-731 SS1]
          Length = 1097

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 181/683 (26%), Positives = 308/683 (45%), Gaps = 96/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  E  E  LL++    + ++D D++VG+NI+ FDL  LL RA   +      +K
Sbjct: 354  VGSQVLEFEK-EADLLSKWKDFVEEVDPDMIVGYNIANFDLPYLLDRASALKC-----NK 407

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
               L R +  K +     F S   G      + + GRL  D     +   +  SY+L  +
Sbjct: 408  FPYLSRIKNQKTQIKEAHFSSKAYGTRDSKETPMEGRLQLDMLQVMQRDYKLRSYTLNAV 467

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
                L + ++EV  H ++   Q  T ES   L  Y   D++L   LM  L       ++ 
Sbjct: 468  CAEFLGEQKEEVH-HSIITELQNGTAESRRRLAVYCLKDSYLPQRLMDKLMSFVNYTEMA 526

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G  +   LQ  +  +V   L        Y+VP                   V+    
Sbjct: 527  RVTGVPFNYLLQRGQQIKVISQLYRKANDDGYLVP------------------AVKSEGS 568

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
            +E+                        Y G  V+EP+KG YD  I  LDF+SLYPSI+  
Sbjct: 569  DEV-----------------------QYEGATVIEPEKGYYDVPIATLDFSSLYPSIMMA 605

Query: 924  YNICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKNLVQRRRMVKT 967
            +N+C+TT+  + + D L           P+    +  ++  G+LP +L++L+  R+  K 
Sbjct: 606  HNLCYTTLLTKETIDRLNLVEGVDYVKTPNHDYFVTPTRRKGLLPTVLEDLITARKRAKA 665

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T 
Sbjct: 666  DLKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRDMIEQTK 725

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+           + +VIYGDTDS+M+  G  D+  A A+  +  + +  K+ + +++
Sbjct: 726  QEVEKEYCIASGKEWDAKVIYGDTDSVMVRFGCPDLKTAMALGAEAAEIITAKFVRPIKL 785

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD   L + V + CL ++
Sbjct: 786  EFEKVYFPYLLISKKRYAG--LYWTKAEKWDKMDSKGIETVRRDNCRLVQTVIETCLHKM 843

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ER  +  +E    ++     D+   ++ + + VITK LTK  E Y  A  Q H ++  
Sbjct: 844  LIERDVDGAIEYTKQTI----SDLLQNKIDMSQLVITKALTK--EDY--AAKQAHSELVK 895

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+KQ    +  + GD V Y+I   +GT   ++       +  D L   +    ID  YY 
Sbjct: 896  RMKQRDVGSAPALGDRVAYVII--KGTKDAAAY-----EKSEDPLYVLENNVPIDTRYYL 948

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+   I G   + L
Sbjct: 949  DNQLSNPLMRIFEPILGEKAKSL 971


>gi|149235442|ref|XP_001523599.1| DNA polymerase delta catalytic subunit [Lodderomyces elongisporus
            NRRL YB-4239]
 gi|146452578|gb|EDK46834.1| DNA polymerase delta catalytic subunit [Lodderomyces elongisporus
            NRRL YB-4239]
          Length = 1087

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 231/976 (23%), Positives = 404/976 (41%), Gaps = 154/976 (15%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            + F  LDA E   G +    + FG  + G  +   C V   +    Y +P G  F  + I
Sbjct: 102  ISFQQLDAEEYNDGDSTYARF-FGITQEG--YSVLCNVTGFIHYFYYPVPKG--FNKNLI 156

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
             +     + +    +  + + ++   G           + V+N   +  K R AF +AEI
Sbjct: 157  PQFTSYLKANYEGVVEVKIEFRESIWGFNNNTKTPFFQIFVNNN-RNITKLRGAFERAEI 215

Query: 455  PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
                 +           PL   +  +N   LL          ++   + G SW+++ K  
Sbjct: 216  SFEGLF-----------PLQQSVTYDNINYLLR--------LMIDCHITGMSWITLPKTK 256

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
                  ++S C+ E ++D    I   S  K +   P                     I+S
Sbjct: 257  YSMVGLKISSCQIECSIDYKDLISHPSEGKWLKMAPL-------------------RILS 297

Query: 575  ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA---GS 631
              + C  +  I       E ++  ++    VV KL G   P  F +     N+ A   GS
Sbjct: 298  FDIECAGRKGI-----FPEAEQDPVIQIANVVSKL-GDAKP--FVRNVFTVNTCAPIIGS 349

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
             +   +  E  LL+     + ++D DV++G+NI+ FD+  LL RA+   +      K   
Sbjct: 350  QIFEHQKEEDMLLHWKDF-VNEVDPDVIIGYNIANFDIPYLLDRAKALGL-----KKFPY 403

Query: 692  LKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
              R +  K      +F S   G     ++ I GR+  D     +   +  SY+L  ++  
Sbjct: 404  FGRLQFVKQEVKDAVFSSRAYGTRENKVANIDGRMQLDLLQFVQREYKLRSYTLNSVSAH 463

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  T E+   L  Y   DA+L + L+  L  L    ++  ++
Sbjct: 464  FLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAYLPLRLLDKLMCLVNYTEMARVT 522

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G  +   L   +  +V   L      ++ ++P                N   E  NVE  
Sbjct: 523  GVPFSYLLSRGQQIKVISQLFRKCLQERIVIP----------------NMKSEGSNVE-- 564

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    + G  V+EP++G YD  I  LDF+SLYPSI+  +N+
Sbjct: 565  ------------------------FEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNL 600

Query: 927  CFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            C+TT+                 ++P+G     P+ K  G+LP +L  L+  R+  KT +K
Sbjct: 601  CYTTLISKNTIESYKLTEEDYTKTPNGDYFVKPNKK-QGILPTILNELLTARKKAKTDLK 659

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  GRE++  T + V
Sbjct: 660  NETDPFKKDVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEV 719

Query: 1030 Q--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLD 1080
            Q        +  + +VIYGDTDS+M+  G  D+     +  +    V++K+K  ++++ +
Sbjct: 720  QEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSQKFKNPIKLEFE 779

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD   L + V    L  IL E
Sbjct: 780  KVYFPYLLINKKRYAG--LYWTNPKKFDKMDTKGIETVRRDNCRLVQNVITKVLEFILEE 837

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  E     +  ++     D+   +V L + VITK  +K    +  +  Q HV++A R++
Sbjct: 838  RDVEKAQRFVKQTIA----DLLQNRVDLSQLVITKAYSK----HDYSAKQAHVELAERMR 889

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    +  + GD V Y+I          S G     +  D L   +    ID+ YY  QQ
Sbjct: 890  KRDPGSAPTLGDRVAYVIV--------KSGGEKNYEKSEDPLYVLENSLPIDVKYYLDQQ 941

Query: 1261 IHPVVSRLCASIEGTS 1276
            +   + R+   I G S
Sbjct: 942  MTKPLERIFIPILGES 957


>gi|73946992|ref|XP_851285.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 1 [Canis
            lupus familiaris]
          Length = 1107

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 182/670 (27%), Positives = 308/670 (45%), Gaps = 103/670 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR+   RS +
Sbjct: 374  EEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKV--HTFPFLGRVSGLRSNI 431

Query: 698  --PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
                 +  +T    G     +  + GR+  D     + LLRE    SY+L  ++   L +
Sbjct: 432  RDSSFQSKQT----GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGE 484

Query: 753  DRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   
Sbjct: 485  QKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPL 543

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
            G  L  +R Q+V+ +                     +++ +Q    G+    V+    ED
Sbjct: 544  GYLL--SRGQQVKVV---------------------SQLLRQAMREGLLMPVVKTEGGED 580

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                                Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT
Sbjct: 581  --------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT 620

Query: 931  VER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTAS 973
            + R                +P G    + +S   G+LP++L+NL+  R+  K  + K   
Sbjct: 621  LLRPGAAQKLGLTKDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETD 679

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
             L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++  
Sbjct: 680  PLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKY 739

Query: 1034 NLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYK 1084
             +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y 
Sbjct: 740  TVENGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYF 799

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
              LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R   
Sbjct: 800  PYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPA 858

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
              V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++   
Sbjct: 859  GAVAHAQD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDP 912

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
             +  S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   
Sbjct: 913  GSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKP 965

Query: 1265 VSRLCASIEG 1274
            + R+   I G
Sbjct: 966  LLRIFEPILG 975


>gi|195590609|ref|XP_002085037.1| GD12524 [Drosophila simulans]
 gi|194197046|gb|EDX10622.1| GD12524 [Drosophila simulans]
          Length = 1096

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 182/687 (26%), Positives = 317/687 (46%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD   L++RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLINRAAHLKVRN--FEYL 405

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + K +I+P               ++ G +++  
Sbjct: 521  RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 566  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  ELTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDT--YDKMDCKGIETVRRDNSPLVANLMNSC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V  +     +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G + E +
Sbjct: 941  TYYLEQQLSKPLLRIFEPILGDNAESI 967


>gi|119719310|ref|YP_919805.1| DNA polymerase II [Thermofilum pendens Hrk 5]
 gi|119524430|gb|ABL77802.1| replicative DNA polymerase I [Thermofilum pendens Hrk 5]
          Length = 794

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 183/674 (27%), Positives = 309/674 (45%), Gaps = 137/674 (20%)

Query: 625  RNSKAGSNVLCCE--SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
            R  + G+ +   +  SSE+ LL   + +L + D DV++G+N + FD   LL RA+V  V 
Sbjct: 206  RTGEDGTVIFSQDEGSSEKKLLEEFVNDLVQYDPDVILGYNSNRFDWPYLLQRARVNGVK 265

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL-------L 735
             S+   +G   +S          ++G          + GR   D +  + +L       L
Sbjct: 266  LSIGRNLGEPSQS----------VYGH-------FSVVGRANVDLYDYASELQEVKVKTL 308

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
              VS  L  + K++    R  +  + V + + + +    L+ Y   DA  S  L+  + V
Sbjct: 309  ENVSEFLGVMKKSE----RVLIDTNKVYEYWDSKDKRSLLLRYAGDDA-RSTYLLGQV-V 362

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LP   QL+++ G    +    +   RVE+ L+             F +            
Sbjct: 363  LPFGIQLSSLVGLPLDQVFAASVGNRVEWFLIR----------QAFVF------------ 400

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                               N+   N   +G+    Y G +VL+PK G++ K I +LDF+S
Sbjct: 401  -------------------NELVPNSRERGEE--TYKGAIVLKPKPGVHKK-IAVLDFSS 438

Query: 916  LYPSIIQEYNICFTTVERSPDGLVP---HLPSSKT--------------TGVLPELLKNL 958
            +YP+I+ +YNI       SPD  VP   H+  S+                G   ++L++L
Sbjct: 439  MYPNIMIKYNI-------SPDTYVPPEEHVDPSEVWVAPEVGHRFRKHPPGFYRKVLESL 491

Query: 959  VQRRRMVKTWMKTAS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            ++ RR ++  MKT      + +  D +Q+A+K+  N+ YG  G+S +R+Y + +AE  T 
Sbjct: 492  LEARRRLREKMKTLDPRSEEYRIYDERQKAIKVITNATYGYSGWSMARWYKREVAEATTA 551

Query: 1017 QGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLE 1076
             GRE++++T+   Q +L L +IYGDTDSI +    + I       G++++ V K+    E
Sbjct: 552  WGRELIKATIKKAQ-SLGLSIIYGDTDSIFVQFDEEKI-------GRLVEYVEKEL-GFE 602

Query: 1077 IDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            I LD +Y+++   + KKKY  +     DG     ++  G + VR DW+ +SKE+ +  + 
Sbjct: 603  IKLDKVYEKVFFTESKKKYCGL---LADGR----VDLVGFEAVRGDWAEISKEIQERVVE 655

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
             +L E      V+ +  ++ ++ E    G++ LEK VI KTL+K  + Y    + PHV V
Sbjct: 656  IVLKEEDPWKAVDFVRKTITELSE----GRIPLEKLVIWKTLSKDLDEY--EVDAPHVVV 709

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A  LK+ GY  G   G  + YI+    G  S  +  +    + PDE         +D DY
Sbjct: 710  ARELKRLGYRVG--KGAKIGYIVVKGAGKVSEKAKPLIS-VKSPDE---------VDTDY 757

Query: 1256 YASQQIHPVVSRLC 1269
            Y  +QI P   R+ 
Sbjct: 758  YVKRQIVPAALRIL 771


>gi|448103715|ref|XP_004200106.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
 gi|359381528|emb|CCE81987.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
          Length = 1079

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 243/986 (24%), Positives = 421/986 (42%), Gaps = 176/986 (17%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYA-IPNGPLFQTDE 393
            + F  LDA E +    + +   FG  + G   +S    V+N     Y  +P G  F+   
Sbjct: 94   ITFQQLDAEESMIDG-LSSARFFGITEEG---YSVLCEVRNFLHYFYVPVPKG-FFRDSH 148

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
            + + E   + +          L++   G    + +  L + V N   +  K R +F + E
Sbjct: 149  LTQFENYLKNNYQGVCKAEICLKESIWGFNNNVKSPFLKIYVDNS-KNISKIRGSFERGE 207

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--S 511
            I             F++   P ++  +N   LL          +V  K+ G SWL++   
Sbjct: 208  IR------------FENLFPPQNVTYDNINYLLR--------LMVDCKISGMSWLTLPKG 247

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKR 566
            K+      ++VS C+ E  +D  +DI          ++ P+ V + ++     K +F + 
Sbjct: 248  KYGMISDFEKVSTCQLECFIDY-RDIISHPPDGEWLKLAPLRVLSFDIECSGRKGIFPEA 306

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
               + I  A+VV             +   KP + + FTV             N  A    
Sbjct: 307  DQDSVIQIANVVS-----------KTGESKPFVRNVFTV-------------NTCA---- 338

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS +   E+ E  L++     +  +D D+++G+NI+ FDL  L+ RA+   +  S +
Sbjct: 339  SIIGSQIFEHETEEEMLMHWRDF-IVDVDPDIIIGYNIANFDLPYLIDRAKALGL--SDF 395

Query: 687  SKIGRLKRSEMPKLRK--GRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
               GRL     P +++    T+F S   G     +  I GR+  D     +   +  SY+
Sbjct: 396  PFFGRL-----PSVKQEVKDTVFSSRAYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYT 450

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L + LM  L  L   
Sbjct: 451  LNSVSAHFLGEQKEDVQ-HSIITDLQNGNRETRRRLAVYCLKDAYLPLRLMEKLMCLVNY 509

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G  +   L  AR Q++                         K+  Q     +E
Sbjct: 510  TEMARVTGVPFSYLL--ARGQQI-------------------------KVISQLFRKCLE 542

Query: 860  DRNV-----EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
            D  V      E TNED                    Y G +V+EP +G YD  I  LDF+
Sbjct: 543  DNIVIPNMKSEGTNED--------------------YEGAIVIEPVRGYYDVPIATLDFS 582

Query: 915  SLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNL 958
            SLYPSI+  +N+C+TT+                  +P+G    +   K  G+LP +LK L
Sbjct: 583  SLYPSIMMAHNLCYTTLLNKQTINTLNLKEDDYTLTPNGDY-FVKDHKRKGILPTILKEL 641

Query: 959  VQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            +  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  
Sbjct: 642  LTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAF 701

Query: 1018 GREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            GRE++  T + VQ + ++        +VIYGDTDS+M+  G +D+        +    V+
Sbjct: 702  GREMIEKTKNEVQEHYSIKNGFPFDSQVIYGDTDSVMVRFGFNDLETCMKYGEEAANYVS 761

Query: 1070 KKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
             K+K  ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD   L + 
Sbjct: 762  TKFKDPIKLEFEKVYFPYLLINKKRYAG--LYWTNPQKFDKMDTKGIETVRRDNCRLVQN 819

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V    L  IL ER   DV ++ H  + +   D+   ++ L + VITK  +K    +  A 
Sbjct: 820  VITKVLEYILEER---DVAKAEH-YVKQTIADLLQNRIDLSQLVITKAYSK----HDYAA 871

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
             Q H+++A R+K+    +  + GD V Y+I      +S SS       +  D L   +  
Sbjct: 872  KQAHIELAERMKKRDPGSAPTLGDRVAYVI-----INSASS---KNYEKSEDPLYVLEHS 923

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEG 1274
              ID+ YY   Q+   + R+   I G
Sbjct: 924  LPIDVKYYLDNQLSNPLMRIFEPILG 949


>gi|195477860|ref|XP_002086418.1| GE23127 [Drosophila yakuba]
 gi|194186208|gb|EDW99819.1| GE23127 [Drosophila yakuba]
          Length = 1092

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 182/687 (26%), Positives = 317/687 (46%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD   L++RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLINRAAHLKVKN--FEYL 405

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + K +I+P               ++ G +++  
Sbjct: 521  RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 566  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLREQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  EMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDT--YDKMDCKGIETVRRDNSPLVANLMNSC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V  +     +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G + E +
Sbjct: 941  TYYLEQQLSKPLLRIFEPILGDNAESI 967


>gi|340714998|ref|XP_003396008.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 2
            [Bombus terrestris]
          Length = 1104

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 304/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E+ +L +    + +LD D+  G+NI+ FD   L++RA+   V    +  
Sbjct: 364  VGCQVLSFEK-EQKMLEKWADFVRQLDPDIFTGYNINNFDFTYLINRAKHLNVKDFYF-- 420

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K   +  + K +       G          GR+  D  L      +  SY+L  ++
Sbjct: 421  LGRIK--NIKSVIKTQVFLSKQMGRRENKSINFEGRVPFDLLLVLVRDYKLRSYTLNAVS 478

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 479  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 537

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                          
Sbjct: 538  VTGVSICSLLTRGQQIKVVSQLLRKTREKGYLIPV------------------------- 572

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             HR       + G  V+EPK+G Y   I  LDF+SLYPSII  +
Sbjct: 573  -----------------HRGQASDEQFEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAH 615

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +    +   + S   T               G+LPE+L+NL+  R+  K  +
Sbjct: 616  NLCYTTLLKRNTQIKLKIDSDDITVTPSDSQFVKATLRKGILPEILENLLTARKAAKAEL 675

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 676  KKETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQE 735

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +         V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 736  VEGQYCVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 795

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 796  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 853

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + V+TK LTK       A  Q HV++A ++
Sbjct: 854  DRNPNDAL----NYAKQIISDLLCNRIDISQLVVTKELTKTDY----AAKQAHVELAAKM 905

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  + + +    ID +YY  
Sbjct: 906  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDPIYVLENNVP--IDTNYYLE 957

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 958  NQLAKPLVRIFEPILGEKAESL 979


>gi|185177517|pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
          Length = 775

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 178/652 (27%), Positives = 295/652 (45%), Gaps = 110/652 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D D++V +N   FD   L  RA+   +  +    IGR      
Sbjct: 185  STEKEMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT----IGR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            PK+++           G M+ +   GR+  D +   R  +   +Y+L  + +    K ++
Sbjct: 239  PKMQR----------IGDMTAVEVKGRIHFDLYHVIRTTINLPTYTLEAVYEAIFGKPKE 288

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTL 814
            +V   ++ K +++ E+L  + +Y   DA  + EL      LP+  QL+ + G  LW  + 
Sbjct: 289  KVYADEIAKAWESGENLERVAKYSMEDAKATYEL--GKEFLPMEIQLSRLVGQPLWDVS- 345

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            + +    VE+ LL     +  + P                                    
Sbjct: 346  RSSTGNLVEWFLLRKAYERNEVAP------------------------------------ 369

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
            N  S  ++++  R  +Y GG V EP+KGL++  I+ LD+ SLYPSII  +N+       S
Sbjct: 370  NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWEN-IVYLDYKSLYPSIIITHNV-------S 420

Query: 935  PDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
            PD L             V H       G +P LL +L++ R+ +KT MK T   ++   L
Sbjct: 421  PDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKMKETQDPIEKILL 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+KL ANS YG  G++ +R+Y K  AE +T  GR+ +      ++     +V+Y 
Sbjct: 481  DYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYI 540

Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I  G  +  K KA+  + ++ +N K    LE++ +G YKR   + KK+YA +
Sbjct: 541  DTDGLYATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K      VI R GL++VRRDWS ++KE     L  IL     E+ V  +   + K 
Sbjct: 599  DEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK- 650

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
               + + ++  EK  I + +T+P   Y      PHV VA +L   G       G  + YI
Sbjct: 651  ---LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            +    G        I+ RA   +E      K+  D +YY   Q+ P V R+ 
Sbjct: 704  VLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746


>gi|324120712|dbj|BAJ78747.1| DNA polymerase delta catalytic subunit [Nomadacris japonica]
          Length = 1092

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 298/658 (45%), Gaps = 95/658 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            ++D D+  G+NI+ FD   L+ RA    + +  ++ +GR+K  +     +       G  
Sbjct: 378  EVDPDLFTGYNINNFDFYYLISRAS--HLNARNFNYLGRIKNIKSVVKEQVLQSKQMGRR 435

Query: 713  PGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT- 768
                  + GR+  D  L    LLRE    SY+L  ++   L + +++V  H+++   Q  
Sbjct: 436  ENKNVNVEGRVAFDLLLV---LLREYKLRSYTLNAVSYHFLQEQKEDVH-HNIITDLQNG 491

Query: 769  -LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              ++   L  Y   DA+L + L+  L  +    ++  ++G      L   +  +V   LL
Sbjct: 492  NPQTRRRLAVYCLKDAYLPIRLLDKLMCIINYMEMARVTGVSLASLLTRGQQIKVVSQLL 551

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
               R + Y++P                                           +  G +
Sbjct: 552  RKARERNYLMPA------------------------------------------YGGGAQ 569

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT----VERSPDGLVP--- 940
               + G  V+EPKKG Y   I  LDF+SLYPSI+  +N+C+TT    V +   GL P   
Sbjct: 570  EEQFEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTLLQGVAKDRLGLSPDQY 629

Query: 941  --------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
                     +  S   G+LPE+L+NL+  R+  K  +K  +   K + LD +Q ALK++A
Sbjct: 630  TKTPAGNYFVRQSVCKGLLPEILENLLSARKRAKEELKRETDPFKKKVLDGRQLALKISA 689

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTD 1043
            NS+YG  G    +     ++  +T  GR ++  T   V+ + N+        EVIYGDTD
Sbjct: 690  NSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHYNIANGYEHDSEVIYGDTD 749

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+M+  G+  +  A A+  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + F 
Sbjct: 750  SVMVKFGVKSLEAAMALGREAAEYVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYFT 807

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                Y+ ++ KG++ VRRD   L   + + CL ++L ER  +  VE       ++  D+ 
Sbjct: 808  QPDKYDKMDCKGIETVRRDNCPLVANMMNTCLQKLLIERDPDGAVEYAK----QIISDLL 863

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++ + + VITK LTK       A  Q HV++A ++K+    T    GD VPY++    
Sbjct: 864  CNRIDISQLVITKELTKSDY----AAKQAHVELAAKMKKRDPGTAPKLGDRVPYVL---- 915

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             T++  +     +A  P  +   +    ID  YY   Q+   + R+ A I G   E +
Sbjct: 916  -TTAAKNTPAYMKAEDP--IYVLENNIPIDSSYYLENQLSKPLLRIFAPILGDKAESI 970


>gi|407396863|gb|EKF27570.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1029

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 195/804 (24%), Positives = 355/804 (44%), Gaps = 116/804 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   + G +WL+I   S   A +R S C+ E+   S + ++   +      + P  + 
Sbjct: 177  FIVDNCISGCNWLTIPVGSFLIATERTSTCQIELCC-SHEAVQNHDAVGQYLSIAPFRIL 235

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            +I++     K +F   +D + ++  +  C +      P           L+      K  
Sbjct: 236  SIDIECQGKKGLFPDPED-DPVIQIANHCINYGNEAEP-----------LTRTVFTLKSC 283

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G I               AG+ V   E+ E  LL  +   +  +D D+  G+NIS FD  
Sbjct: 284  GPI---------------AGARVCSYETEEEMLLEWVRF-VKAIDPDIFTGYNISNFDFP 327

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
             LL+R    +   +      ++    +P+ +K ++    G        + GR++ D  + 
Sbjct: 328  YLLNRGAALKTNDAFHYWGRQINERTVPREKKFQSK-QMGNREYTELTLEGRVILDVMVV 386

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSME 788
             +   +  SYSL  +++  L + +++V  H ++   Q  + E+   L  Y   DA L ++
Sbjct: 387  IQRDYKLRSYSLNAVSQHFLGEQKEDVH-HSIISDLQQGSEETRRRLAVYCLKDALLPVK 445

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L V+    ++  ++G      L+  +  +V  ++L   +AK  +VP          
Sbjct: 446  LLDRLMVIVNNVEMARVTGVPIEWLLERGQQIKVFSMMLRKAKAKDLLVP---------- 495

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
             A + S  G + R                             Y G  V+EP KG Y+  I
Sbjct: 496  -AVEYSGGGGDQR----------------------------GYEGATVIEPLKGFYNCPI 526

Query: 909  LLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPHLPSSKT-------TGVLPELL 955
            + LDF SLYPSII  +N+C++T      + R P  ++   P+  T        G+LPE+L
Sbjct: 527  VTLDFASLYPSIIIAHNLCYSTLVRPSDIARYPAEMLSRTPTGDTFVKKELFPGILPEVL 586

Query: 956  KNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            ++L+  R+  K+ MK      L+ + L+ +Q ALK++ANS+YG  G    +     ++  
Sbjct: 587  QDLLAARKRAKSLMKDVPMESLEYKVLNGRQLALKISANSVYGFTGAQIGKLPCLEVSSS 646

Query: 1014 ITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGKVI 1065
            +T  GR ++  T  LV++    ++V+YGDTDS+MI    D+       +  A        
Sbjct: 647  VTAYGRLMIDQTKSLVESLYPGVKVVYGDTDSVMIKCVTDEKGTEKERLEYAMTFGKGAA 706

Query: 1066 QEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
            +EV+  +   ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD   
Sbjct: 707  EEVSSHFLNPIKLEFEKVYFPYLLMNKKRYAG--LLWTNTERYDKLDAKGIETVRRDNCP 764

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L   V    L++IL +RS +  VE +  ++     D+   ++ +   VITKT +K    Y
Sbjct: 765  LVASVISGVLNRILIQRSVDSAVEFVKGTI----RDLLLNRLDISHLVITKTFSKAENEY 820

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
              A  Q HV +  R+++   ++  + GD V Y+I         ++ G     R  D +  
Sbjct: 821  AGA--QAHVALVERMRKRDPASAPNIGDRVAYVIV-------RAAKGAKAYERSEDPIYV 871

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRL 1268
             +    ID  YY   Q+ P + R+
Sbjct: 872  LENNIPIDTQYYLEHQLAPPLLRV 895


>gi|393222031|gb|EJD07515.1| hypothetical protein FOMMEDRAFT_164466 [Fomitiporia mediterranea
            MF3/22]
          Length = 1062

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 206/835 (24%), Positives = 363/835 (43%), Gaps = 138/835 (16%)

Query: 482  FCSLLGTHSSALEL---FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKD 536
            F  ++ T+ S +     F++  KV G +W+ +   K+      ++ S C+ E TV +  D
Sbjct: 192  FNGIVTTYESNIPYILRFMIDTKVVGMNWIEVPAGKYQLLSGEKKHSCCQLEFTV-AWND 250

Query: 537  IRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLA 591
                +     +++ P+ + + ++     K +F + Q ++ ++  + +   + +       
Sbjct: 251  FISHAPDGEWSKIAPLRILSFDIECAGRKGIFPEAQ-IDPVIQIANMVTRQGE------- 302

Query: 592  SEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIEL 651
                KP + + FT+                    +   GS VL  +S E  +L      +
Sbjct: 303  ---SKPFIRNVFTL-----------------NTCSHIVGSQVLSYKS-ELEMLEAWRDFV 341

Query: 652  YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGS 709
             ++D D+++G+NI+ FDL  LL RA   +    M+  +GR+K  ++ +         FG 
Sbjct: 342  EQVDPDIVIGYNIANFDLPYLLDRATAIKSKKFMY--LGRMKGVKTVVKDTHFSSKAFGQ 399

Query: 710  GASPGIMSCIAGRLLCD--TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
              S    + + GRL  D   F+     LR  SY+L  +    L + +++V  H V+   Q
Sbjct: 400  RDSKE--TDMDGRLQLDLLQFMHREHKLR--SYTLNAVCARFLGEQKEDVH-HSVITELQ 454

Query: 768  --TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
              T ES   L  Y   DA+L   LM  L       ++  ++G  +   LQ  ++ +V   
Sbjct: 455  NGTAESRRRLAVYCLKDAYLPQRLMDKLMCFVNYIEMARVTGVPFHFLLQRGQSIKVLSQ 514

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            LL     + YI P                                            + G
Sbjct: 515  LLRRANDEGYITPTL------------------------------------------KGG 532

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDGL----- 938
                 Y G  V+EPKKG YD  I  LDF+SLYPSI+  +N+C+TT+  + + D L     
Sbjct: 533  GTDEQYEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLLDKHTIDRLNLVKG 592

Query: 939  -----VPH----LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                  P+    +   K  G+LP +L++L+  R+  K  +K  +   +   LD +Q ALK
Sbjct: 593  VDYIQTPNNDFFVTKEKRKGLLPSVLEDLIAARKRAKADLKKETDPFRRAVLDGRQLALK 652

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYG 1040
            ++ANS+YG  G +  +    P++  +T  GR+++  T   V+           N EVIYG
Sbjct: 653  ISANSVYGFTGATIGKLPCLPISSSVTAYGRQMIEKTKQEVEAEYCIANGREHNAEVIYG 712

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M+  G  D+A    +  +    V  K+ K ++++ + +Y   LL+ KK+YA +  
Sbjct: 713  DTDSVMVKFGPSDLATVMQMGSEAADLVTAKFIKPIKLEFEKVYFPYLLINKKRYAGLYW 772

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               D   Y+ ++ KG++ VRRD   L   V + CL ++L +R     V+   + + +V  
Sbjct: 773  TKTD--KYDKMDSKGIETVRRDNCRLVSTVIETCLHKMLIDRD----VKGAEDYVKQVIS 826

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + + VITK L K          Q HV +A R+K+    +  + GD V Y++ 
Sbjct: 827  DLLQNKIDMSQLVITKALAKTDY----TAKQAHVVLAERMKERDAGSAPALGDRVAYVVI 882

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +G  +      A   +  D +   +    ID  YY   Q+   + R+   + G
Sbjct: 883  --KGMKNA-----AAYEKSEDPIYVLENNIPIDTKYYLENQLSKPLMRIFEPVLG 930


>gi|195997435|ref|XP_002108586.1| hypothetical protein TRIADDRAFT_18979 [Trichoplax adhaerens]
 gi|190589362|gb|EDV29384.1| hypothetical protein TRIADDRAFT_18979 [Trichoplax adhaerens]
          Length = 1050

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 172/683 (25%), Positives = 319/683 (46%), Gaps = 102/683 (14%)

Query: 627  SKAGSNVLCCE----SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
            +++ +N++ C+    S E+ +L        ++D D++ G+N+    L  LL+R++   + 
Sbjct: 306  TQSSANIVGCQLHTFSKEKEMLKAWHEFFLEVDPDIITGYNVVNSSLPYLLNRSKALGIE 365

Query: 683  SSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV- 738
               +S +GR+      K +     F S   G     +  I+GR+  D       LLR+  
Sbjct: 366  K--FSHLGRITNE---KTQISSNTFQSRAYGKRENKVMNISGRVQFDLL---HALLRDYK 417

Query: 739  --SYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE-SLMELIEYGETDAWLSMELMFHLSV 795
              SYSL  +    L + ++ + P  +  + +  + S   L  Y   +A L ++L+  L  
Sbjct: 418  LRSYSLNAVTFHFLKEQKELLQPSVIADLLRGNDRSRRRLAIYCLKNASLPIKLLDKLMC 477

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            +    ++  ++G   G  L   R Q+++            +V     Y KE KM      
Sbjct: 478  IINYMEMARVTGVPLGCLL--TRGQQIK------------VVSQLLRYAKEEKMLM---- 519

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                  +H    K + G  Y G +V+EP +G YD  I  LDF+S
Sbjct: 520  ---------------------PAH----KAEAGDDYTGAIVIEPVRGYYDCPIATLDFSS 554

Query: 916  LYPSIIQEYNICFTTVER-------SPDGLVPHLPSSKT-------TGVLPELLKNLVQR 961
            LYPSI+Q +N+C+TT+ +       SPD  +   PS           G+LP++L+NL+  
Sbjct: 555  LYPSIMQAHNLCYTTLLQHHHLSNLSPDDYI-KTPSGNYFVKKNLRAGILPKILQNLLSA 613

Query: 962  RRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R+  K  +K      K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR+
Sbjct: 614  RKKAKFDLKNEKDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEVSQSVTAFGRQ 673

Query: 1021 ILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            ++  +  LV+    +        +VIYGDTDS+M+  G+D + ++  +  +    ++  +
Sbjct: 674  MIEKSRQLVEERYTIKNGYKFDAQVIYGDTDSVMVKFGLDTVEESMELGKEAANYISSHF 733

Query: 1073 KC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
               ++++ + +Y   LL+ KK+YA   + F     Y+ ++ KG++ VRRD   L   + +
Sbjct: 734  PSPIKLEFEKVYFPYLLINKKRYAG--LYFTKADTYDKVDCKGIETVRRDNCPLVANLIN 791

Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
             CL ++L +R+ +  ++ +  ++     D+   ++ + + +ITK LT+  + Y  A  Q 
Sbjct: 792  ACLQKLLVDRNPDSAIKHVQQTI----SDLLCNRIDISQLIITKELTRSDDEY--AGKQA 845

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI 1251
            HV++A ++++   S+  + GD VPY+I       +G+  G A   R  D +   +    I
Sbjct: 846  HVELAAKMRKRDPSSCPTLGDRVPYVII------TGAR-GAAAYTRSEDPVYALENSIAI 898

Query: 1252 DIDYYASQQIHPVVSRLCASIEG 1274
            D  YY   Q+   + R+   I G
Sbjct: 899  DTTYYLENQLSKPLLRIFEPILG 921


>gi|269861177|ref|XP_002650302.1| DNA polymerase alpha catalytic subunit [Enterocytozoon bieneusi H348]
 gi|220066250|gb|EED43740.1| DNA polymerase alpha catalytic subunit [Enterocytozoon bieneusi H348]
          Length = 498

 Score =  189 bits (479), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 199/378 (52%), Gaps = 46/378 (12%)

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSKTTGV------LPELLKNLVQRRRMVKTWM-KTAS 973
            IQEYNICF+T++         L   K   +      LP+++ NLV+RRR +K  M    +
Sbjct: 1    IQEYNICFSTIDL--------LKIDKNNELDMNLLFLPKIINNLVRRRREIKKQMINCKN 52

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
              ++ Q +I+Q+ALKLTANSMYGCLGF N+RFY   +A  IT+QGR IL+ T  ++   L
Sbjct: 53   SEQLNQYNIRQKALKLTANSMYGCLGFPNNRFYNYDMAAFITEQGRNILKDT-KIISEKL 111

Query: 1034 NLEVIYGDTDSIMIHSGI----DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL 1089
            NL VIYGDTDSIMIH+      +   KAK    ++ + +N KYK + I+L+  + ++LL 
Sbjct: 112  NLNVIYGDTDSIMIHTKYPGTREYYKKAKNSIEELAKAINNKYKNIVIELECAFAKLLLY 171

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KKKYA +       M    IE KGL++VRRD++ +S  + +  L  IL+E   +  +++
Sbjct: 172  AKKKYAGLVFN----MNTSYIEIKGLEIVRRDYAKISTNLQEKVLKIILNENDIDYKIDN 227

Query: 1150 IHN----SLMKVQEDMRSG--QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
              N     + KV  +  +    +  E ++I+  L K  E Y      PH+ +  RL + G
Sbjct: 228  KKNINIEEIYKVCSNYYNNIETIKSENFIISVILRKNLEFYETKNPLPHINLGHRLSKKG 287

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
             +    AGD + YI+        G S        HP E         ID ++Y   QI P
Sbjct: 288  INY--KAGDVINYIM--------GKSTNATAEPYHPIEY------CTIDYEWYIKNQILP 331

Query: 1264 VVSRLCASIEGTSPERLA 1281
             + RL + I+    E++A
Sbjct: 332  PLYRLLSPIKEIYIEKIA 349


>gi|321264115|ref|XP_003196775.1| delta DNA polymerase [Cryptococcus gattii WM276]
 gi|317463252|gb|ADV24988.1| Delta DNA polymerase, putative [Cryptococcus gattii WM276]
          Length = 1049

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 202/821 (24%), Positives = 357/821 (43%), Gaps = 141/821 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  K+ G +W+SI   ++       + S C+ EI+ +  KD+   +       + P+ 
Sbjct: 198  FMIDTKIVGMNWVSIPGGRYDLLEGGNKKSHCQTEISCNY-KDLISHAPENEWLNIAPLR 256

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            V + +++    K      +V+ ++  + +     +           KP + + FT+    
Sbjct: 257  VLSFDIECAGRKGIFPEANVDPVIQIAAMVTRHGE----------SKPFIRNVFTL---- 302

Query: 610  DGGIFPMGFNKEATDRNSKA---GSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNIS 665
                            N+ A   GS VL  +   + LL  R  +E   +D D+++G+NIS
Sbjct: 303  ----------------NTCAHIVGSQVLEFKDERQLLLEWRKFVE--AVDPDMIIGYNIS 344

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
             FDL  LL RA+  ++P   ++ +GRL+  R+E+ +       +G   S  +   + GRL
Sbjct: 345  NFDLPYLLDRAKALKIPD--FAFLGRLRNVRTEIKETHFSSKAYGQRDSKAVN--MEGRL 400

Query: 724  LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGET 781
              D     +   +  SY+L  +    L + +++V  H ++   Q  T +S   L  Y   
Sbjct: 401  QLDILQVMQRDYKLRSYTLNAVCAQFLGEQKEDVH-HSIITELQNGTADSRRRLAVYCLK 459

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L   LM  L       ++  ++G  +   L   +  +V   L        Y++P   
Sbjct: 460  DAYLPQRLMDKLMCFVNYTEMARVTGVPFNYLLSRGQQIKVVSQLYRNAADAGYVIP--- 516

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                                    L +E ++                  Y G  V+EP K
Sbjct: 517  -----------------------ALKSEGSD----------------EQYEGATVIEPSK 537

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFT------TVERSPDGLVP-----HLP------- 943
            G YD  I  LDF SLYPSI+  +N+C+T      T+ER    LV      H P       
Sbjct: 538  GFYDVPIATLDFASLYPSIMMAHNLCYTTLLDKGTIERL--KLVEGQDYVHTPNNDFFAT 595

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            S +  G+LP +L+NL+  R+  K  +K      K   LD +Q ALK++ANS+YG  G + 
Sbjct: 596  SKRRKGLLPHILENLLAARKRAKQDLKVEKDPFKRAVLDGRQLALKVSANSVYGFTGATV 655

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDI 1054
             +     ++  +T  GR+++  T   V+   ++        +V+YGDTDS+M+  G  D+
Sbjct: 656  GKLPCLAISSSVTAYGRQMIELTKKEVEAQYSMKNGYDHDAKVVYGDTDSVMVRFGCPDL 715

Query: 1055 AKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
              A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ K
Sbjct: 716  PTAMRLGAEAADLVSGKFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTK 773

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            G++ VRRD   L   V + CL ++L +R  +   + + +++     D+   ++ + + VI
Sbjct: 774  GIETVRRDNCRLVSTVIETCLFKMLIDRDVKGAEDYVKDTI----ADLLQNKIDMSQLVI 829

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK L K       A  Q HV++  R+++    +  S GD V Y+I   +G       G A
Sbjct: 830  TKALAKADY----AAKQAHVELVERMRKRDAGSAPSLGDRVAYVIV--KGVK-----GAA 878

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 879  AYEKSEDPLYVLEHNVPIDTRYYLENQLSKPLMRIFEPILG 919


>gi|407862999|gb|EKG07818.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi]
          Length = 1029

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 194/804 (24%), Positives = 355/804 (44%), Gaps = 116/804 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   + G +WL+I   S C A +R S C+ E+   S + ++   +      + P  + 
Sbjct: 177  FIVDNGISGCNWLTIPVGSFCTATERTSTCQIELCC-SHEAVQNHDAVGQYLSIAPFRIL 235

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            +I++     K +F   ++ + ++  +  C +      P           L+      K  
Sbjct: 236  SIDIECQGKKGLFPDPEE-DPVIQIANHCINYGNEAEP-----------LTRTIFTLKSC 283

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G I               AG+ V   E+ E  LL  +   +  +D D+  G+NIS FD  
Sbjct: 284  GPI---------------AGARVCSYETEEEMLLEWVRF-VKAIDPDIFTGYNISNFDFP 327

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
             LL+R    +   +      ++    +P+ +K ++    G        + GR++ D  + 
Sbjct: 328  YLLNRGAALKTNDAFHYWGRQINERTVPREKKFQSK-QMGNREYTELTLEGRVILDVMVV 386

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSME 788
             +   +  SYSL  +++  L + +++V  H ++   Q  + E+   L  Y   DA L ++
Sbjct: 387  IQRDYKLRSYSLNAVSQHFLGEQKEDVH-HSIIADLQQGSEETRRRLAVYCLKDALLPVK 445

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L V+    ++  ++G      L+  +  +V  ++L   + K  +VP          
Sbjct: 446  LLERLMVVVNNVEMARVTGVPIEWLLERGQQIKVFSMMLRKAKVKDLLVP---------- 495

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
             A + S  G + R                             Y G  V+EP KG Y+  I
Sbjct: 496  -AVEYSGGGGDQR----------------------------GYEGATVIEPLKGFYNCPI 526

Query: 909  LLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPHLPSSKT-------TGVLPELL 955
            + LDF SLYPSII  +N+C++T      + R P  ++   P+  T        G+LPE+L
Sbjct: 527  VTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYPAEMLSRTPTGDTFVKKELFPGILPEVL 586

Query: 956  KNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            ++L+  R+  K+ MK      L+ + L+ +Q ALK++ANS+YG  G    +     ++  
Sbjct: 587  QDLLAARKRAKSLMKDVPMESLEYKVLNGRQLALKISANSVYGFTGAQVGKLPCLEVSSS 646

Query: 1014 ITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGKVI 1065
            +T  GR ++  T  LV++    ++V+YGDTDS+MI    D+       +  A        
Sbjct: 647  VTAYGRLMIDQTKFLVESLYPGVKVVYGDTDSVMIKCLTDEKGTEKERLEYAMTFGKGAA 706

Query: 1066 QEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
            +EV+  +   ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD   
Sbjct: 707  EEVSSHFLNPIKLEFEKVYFPYLLMNKKRYAG--LLWTNTERYDKLDAKGIETVRRDNCP 764

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L   V    L++IL +RS +  VE +  ++     D+   ++ +   VITKT +K    Y
Sbjct: 765  LVASVISGVLNRILIQRSVDSAVEFVKGTI----RDLLLNRLDISHLVITKTFSKAENEY 820

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
              A  Q HV +  R+++   ++  + GD V Y+I         ++ G     R  D +  
Sbjct: 821  AGA--QAHVALVERMRKRDPASAPNIGDRVAYVIV-------RAAKGAKAYERSEDPIYV 871

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRL 1268
             +    ID  YY   Q+ P + R+
Sbjct: 872  LENNIPIDTQYYLEHQLAPPLLRV 895


>gi|326480238|gb|EGE04248.1| DNA polymerase delta catalytic subunit [Trichophyton equinum CBS
            127.97]
          Length = 1111

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 203/818 (24%), Positives = 356/818 (43%), Gaps = 134/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K+   P  Q  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPAAKYEVLPPGQCQSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 312

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 313  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 355

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E  L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 356  VFVMD------TCSSIVNTQVLEFDKEENMLMAWRDFVE--KVDPDVIIGYNIANFDFPY 407

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    WS++  ++          +T F S   G      +   GR+  D 
Sbjct: 408  LLDRARYLNCLKFPYWSRLKGVQSHAT------KTSFASKQMGKRDSKATNTNGRIQLDL 461

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 462  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 519

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 520  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 574

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 575  ------------------------------LKNDDNSNQQ--------YEGATVIEPVRD 596

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSK 946
             Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V         +  
Sbjct: 597  YYPVPIATLDFASLYPSIIQAHNLCYTTLLNKRTVEKLGLKKDEDYIVTPNDDMFCTAKV 656

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 657  RKGLLSQILEELLTARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
                +A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 717  PCLAIASSTTSYGRQMIEKTKDEVEARYTISNGYSHDAKVIYGDTDSVMVKFGTTDLAEA 776

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++
Sbjct: 777  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAG--LYWTNPVKYDKMDTKGIE 834

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL +R+       + N    +  D+   +V + K VITK 
Sbjct: 835  TVRRDNCLLVQTVIETVLNKILIDRNVNGAETYVKN----IISDLLQNKVDMSKLVITKA 890

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK  E Y     Q HV++  R+++    +  + GD V Y+I        G + G     
Sbjct: 891  LTK--EEY--TGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV-------GGATGAKNYE 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 940  KSEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 977


>gi|431920730|gb|ELK18503.1| DNA polymerase delta catalytic subunit [Pteropus alecto]
          Length = 1109

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 180/673 (26%), Positives = 310/673 (46%), Gaps = 109/673 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------L 692
            E  LL      +  +D D++ G+NI  FDL  LL RAQ+ +V    +  +GR       +
Sbjct: 374  EEELLQAWSTFIRTMDPDIITGYNIQNFDLPYLLSRAQILKVQG--FPFLGRVAGLRSTI 431

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQ 749
            + S     + GR          ++S + GR+  D     + LLRE    SY+L  ++   
Sbjct: 432  RDSSFQSKQTGRR------DTKVVSMV-GRVQMDML---QVLLREHKLRSYTLNAVSFHF 481

Query: 750  LNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G
Sbjct: 482  LGEQKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAMEMARVTG 540

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L  AR Q+V+ +                     +++ +Q    G+    V+   
Sbjct: 541  VPLSYLL--ARGQQVKVV---------------------SQLLRQAMREGLLMPVVKTEG 577

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED                    Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C
Sbjct: 578  GED--------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLC 617

Query: 928  FTTVE----------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            +TT+                 R+P G    + +S   G+LP++L+NL+  R+  K  + +
Sbjct: 618  YTTLLRPGTAQKLGLTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAR 676

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+
Sbjct: 677  ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVE 736

Query: 1031 NNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDG 1081
            +   +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + 
Sbjct: 737  SKYTIESGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEK 796

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R
Sbjct: 797  VYFPYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR 855

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              +  V  + +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++
Sbjct: 856  DPKGAVAHVQD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRK 909

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                +  S GD VPY+I        G++ G+A   +  D L   +    +D  YY  QQ+
Sbjct: 910  RDPGSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPVDTQYYLEQQL 962

Query: 1262 HPVVSRLCASIEG 1274
               + R+   I G
Sbjct: 963  AKPLLRIFEPILG 975


>gi|18976584|ref|NP_577941.1| DNA-directed DNA polymerase [Pyrococcus furiosus DSM 3638]
 gi|397650711|ref|YP_006491292.1| DNA-directed DNA polymerase [Pyrococcus furiosus COM1]
 gi|48428875|sp|P61875.1|DPOL_PYRFU RecName: Full=DNA polymerase; AltName: Full=Pfu polymerase
 gi|48428876|sp|P61876.1|DPOL_PYRWO RecName: Full=DNA polymerase; AltName: Full=Pwo polymerase
 gi|216918|dbj|BAA02362.1| DNA polymerase [Pyrococcus furiosus]
 gi|2347063|gb|AAB67984.1| DNA-dependent DNA polymerase [Pyrococcus woesei]
 gi|18892147|gb|AAL80336.1| DNA-directed DNA polymerase [Pyrococcus furiosus DSM 3638]
 gi|393188302|gb|AFN03000.1| DNA-directed DNA polymerase [Pyrococcus furiosus COM1]
          Length = 775

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 179/652 (27%), Positives = 294/652 (45%), Gaps = 110/652 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ R +  + + D D++V +N   FD   L  RA+   +  +    IGR      
Sbjct: 185  SSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT----IGR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            PK+++           G M+ +   GR+  D +      +   +Y+L  + +    K ++
Sbjct: 239  PKMQR----------IGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKE 288

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTL 814
            +V   ++ K +++ E+L  + +Y   DA  + EL      LP+  QL+ + G  LW  + 
Sbjct: 289  KVYADEIAKAWESGENLERVAKYSMEDAKATYEL--GKEFLPMEIQLSRLVGQPLWDVS- 345

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            + +    VE+ LL     +  + P                                    
Sbjct: 346  RSSTGNLVEWFLLRKAYERNEVAP------------------------------------ 369

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
            N  S  ++++  R  +Y GG V EP+KGL++  I+ LDF +LYPSII  +N+       S
Sbjct: 370  NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNV-------S 420

Query: 935  PDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
            PD L             V H       G +P LL +L++ R+ +KT MK T   ++   L
Sbjct: 421  PDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKMKETQDPIEKILL 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+KL ANS YG  G++ +R+Y K  AE +T  GR+ +      ++     +V+Y 
Sbjct: 481  DYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYI 540

Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I  G  +  K KA+  + ++ +N K    LE++ +G YKR   + KK+YA +
Sbjct: 541  DTDGLYATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K      VI R GL++VRRDWS ++KE     L  IL     E+ V  +   + K 
Sbjct: 599  DEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK- 650

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
               + + ++  EK  I + +T+P   Y      PHV VA +L   G       G  + YI
Sbjct: 651  ---LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            +    G        I+ RA   +E      K+  D +YY   Q+ P V R+ 
Sbjct: 704  VLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746


>gi|340052318|emb|CCC46594.1| putative DNA polymerase delta catalytic subunit [Trypanosoma vivax
            Y486]
          Length = 1026

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 195/803 (24%), Positives = 358/803 (44%), Gaps = 116/803 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            FLV  K+ G +WL+ISK     +  R S C+ E+   S   ++   +  H   + P  + 
Sbjct: 176  FLVDNKIGGCNWLTISKDKFVKSTVRTSTCQIEVCC-SFDVLQSHDAVGHYLSIAPFRIL 234

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            +I++     K +F + +  + ++  +  C +     TP+  +                  
Sbjct: 235  SIDIECQGRKGLFPEAEK-DPVIQIANHCINYGAETTPLTKT------------------ 275

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
              +F +  N  A    + AG+ V   E+ E  LL      L ++D D+L G+NI  FD  
Sbjct: 276  --VFTL--NSCA----AIAGATVCAYETEEEMLLAWAQF-LKEVDPDILTGYNICNFDFP 326

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
             LL R     + + ++   GR       +  K       G        + GR++ D  + 
Sbjct: 327  YLLDRGSALAI-NDVYHYWGRQINERTTQREKKFQSKQMGNREYTELTMEGRVVMDVMVV 385

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMEL 789
             +   +  SYSL  +++  L + +++V   ++ ++ Q   E+   L  Y   DA+L ++L
Sbjct: 386  IQRDYKLRSYSLNAVSQQFLGEQKEDVHHSNIAELQQGNHETRRRLAVYCLKDAYLPVKL 445

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +  L ++    ++  ++G   G  L+  +  +V  +LL   R +  ++P           
Sbjct: 446  LERLMIVVNHVEMARVTGVPIGWLLERGQQIKVFSMLLRKARLRDLLIPTL--------- 496

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                                      + S  D R       + G  V+EP KGLY   ++
Sbjct: 497  --------------------------EYSGGDQR------GFEGATVIEPTKGLYMTPVV 524

Query: 910  LLDFNSLYPSIIQEYNICFTTV------ERSPDGLVPHLPSSK-------TTGVLPELLK 956
             LDF SLYPSII  +N+C++T+      ER P   + H P+           GVLPE+L+
Sbjct: 525  TLDFASLYPSIIIAHNLCYSTLVQDCNAERYPKDGLNHTPTGHYFVSRDVYPGVLPEVLQ 584

Query: 957  NLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            +L+  R+  +  M +     L+ + L+ +Q ALK++ANS+YG  G    R     L+  +
Sbjct: 585  DLLLARKNARELMASVPKDSLEYKVLNGRQLALKVSANSVYGFTGAQVGRLPCLELSASV 644

Query: 1015 TQQGREILRSTVDLVQN-NLNLEVIYGDTDSIMIH-------SGIDDIAKAKAIAGKVIQ 1066
            T  GR ++ S    V++ +  ++VIYGDTDS+MI+       +  + + +A        +
Sbjct: 645  TGFGRLMIDSAKSHVESLDPRVKVIYGDTDSVMINYKSSSATTEKEQLEEAMKFGKMAAE 704

Query: 1067 EVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
            +V++++   + ++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++ VRRD   L
Sbjct: 705  KVSQEFLNPIRLEFEKVYFPYLLMNKKRYAG--LLWTNTVQYDKLDTKGIETVRRDNCPL 762

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
               V    L++IL +RS    VE +  ++     D+   ++ + + VITKT +K    Y 
Sbjct: 763  VASVISGVLNRILIQRSEASAVEFVKGTI----RDLLLNRLDISQLVITKTFSKAEVEYA 818

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
             A  Q H+ +  R+++   ++  + GD V Y+I         ++ G     R  D L   
Sbjct: 819  GA--QAHIALVERMRKRDPASAPTIGDRVAYVIV-------RAAKGAKAYERSEDPLYVL 869

Query: 1246 DGKWMIDIDYYASQQIHPVVSRL 1268
            +    ID  YY   Q+ P + R+
Sbjct: 870  ENNIPIDTQYYLEHQLGPPLLRV 892


>gi|325193152|emb|CCA27509.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 1084

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 219/904 (24%), Positives = 403/904 (44%), Gaps = 119/904 (13%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++ +++ G +WL   K  +S   A  + S C+ E+ + +  D++  S +   +++ P  
Sbjct: 227  FMIDKEIHGCNWLQAPKGMYSIRSANDKQSSCQLELDI-ACTDLKSHSPTGQWSKLAPFR 285

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            V + +++ +  K         A     H   I    +  E   P +L            +
Sbjct: 286  VLSFDIECMGRK----GHFPEAE----HDPIIQIANIVQEQGSPALLFR---------NV 328

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
            F +G  K         G++V+     E  +L R    +   D D++ G+N+  FD+  +L
Sbjct: 329  FVLGTCKPIV------GTSVMEF-VREEDMLERWAAFVRLADPDIITGYNVDNFDIPYIL 381

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            +R +  ++  S + ++GRL        +K  +    G S  I + I GR   D +   R 
Sbjct: 382  NRGKSLKL--SEFDQLGRLLSKSAFMEKKTFSSAQYGKSESIKTTIHGRCTFDLYPIMRR 439

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMF 791
              +  SYSL  ++   L + +++V P+ ++   Q  T +    L  Y   DA L ++L+ 
Sbjct: 440  SFQLSSYSLNAVSSAFLGQQKEDV-PYGIISDLQRGTDDDRHRLAVYCLKDASLPLQLLH 498

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
            +LS+L    ++  + G      L+  +  +V  +LL   +    +VP        T    
Sbjct: 499  NLSLLVNYIEMARVCGVPIDYLLERGQQIKVYSMLLRKCKGANLLVP--------TLQRS 550

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            Q +N G            DA                   Y G  V+EP K  Y   I  L
Sbjct: 551  QNANSG------------DA------------------GYEGATVIEPIKAYYTVPIATL 580

Query: 912  DFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLKN 957
            DF SLYPSI+Q +N+C++T+              + SP G V  + +    G+LP +++ 
Sbjct: 581  DFASLYPSIMQAHNLCYSTLVAPNDVDKLNPLQYQTSPSGDV-FVKADTRKGILPMIIEE 639

Query: 958  LVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
            L+  R+  K  M  A+  ++    + +Q ALK++ANS+YG  G    +    P+A  IT 
Sbjct: 640  LLSARKQAKYDMSRATDPMEKAVQNGRQLALKISANSVYGFTGAVVGQLPCIPIASSITA 699

Query: 1017 QGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEV 1068
             GR+ L  T + V+           + +VIYGDTDS+M+  G++ +A+A  +A +    V
Sbjct: 700  YGRQFLFQTKEEVERQFCVANGYPADAQVIYGDTDSVMVKFGVETVAEAMPLAKEAASRV 759

Query: 1069 NKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSK 1127
            +  +   + ++ + +Y   LL+ KK+YA   + + +   YE ++ KGL+ VRRD  LL +
Sbjct: 760  SSIFPSPILLEFEKVYFPYLLMNKKRYAG--LLWTNADKYEKVDSKGLETVRRDNCLLVR 817

Query: 1128 EVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDA 1187
             + + CL +IL +++    +E   + +     D+   ++ +   VITK L K  +     
Sbjct: 818  RLVETCLDKILIQQNVAGAIEYTKSMI----SDLLQNRIDISLLVITKGLKKLVDQRDYK 873

Query: 1188 KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG 1247
              Q H ++A R+++    +    G+ + Y+I      + G +  + ++A  P  + + D 
Sbjct: 874  VKQAHTELAERMRKRDAGSAPVLGERIAYVI-----VNKGKTAPLYEKAEDPVYVLENDI 928

Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSL 1307
               ID +YY  QQ+   + R+   I G +  R ++ L    ++ +S+P+  +  +    +
Sbjct: 929  P--IDWEYYMKQQLQNPLERIFEPIIGLARVR-SELLQGAHTRKRSQPN--LKQNSGGMM 983

Query: 1308 LFAVGDEERYRGCE-PLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN-FWRTLR 1365
             FAV  + +  GC+ PL      C S   C    SSI +   +   + E  ++ FW   +
Sbjct: 984  DFAV-KKSKCLGCKAPLETMAAICKS---CRTHQSSILIRHLQSVQELEILFHRFWT--Q 1037

Query: 1366 CPKC 1369
            C  C
Sbjct: 1038 CQNC 1041


>gi|324120706|dbj|BAJ78744.1| DNA polymerase delta catalytic subunit [Aposthonia japonica]
          Length = 1088

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 181/677 (26%), Positives = 307/677 (45%), Gaps = 88/677 (12%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  +S E  +L +    + +LD D+  G+NI+ FD   L+ RA+   V +  ++ 
Sbjct: 353  VGCQVLSYQS-ETEMLEKWADFIRELDPDIFTGYNINNFDFPYLIQRAKYLNVRN--FTY 409

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+K  +     +       G          GR+  D  L      +  SY+L  ++  
Sbjct: 410  LGRIKNIQSVIKEQVLQSKQMGRRENKHVNFEGRVPFDLLLVLVRDYKLRSYTLNAVSYH 469

Query: 749  QLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H+++   Q   S     L  Y   DA+L + L+  L  +    ++  ++
Sbjct: 470  FLQEQKEDVH-HNIITDLQNGNSQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVT 528

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G      L   +  +V   LL   R K Y++P   TY           + GV++      
Sbjct: 529  GVSLSCLLTRGQQIKVVSQLLRKARDKGYLMP---TY-----------SGGVQEEQ---- 570

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    Y G  V+EP KG Y   I  LDF+SLYPSI+  +N+
Sbjct: 571  ------------------------YEGATVIEPLKGYYADPITTLDFSSLYPSIMMAHNL 606

Query: 927  CFTTVER--SPDGLVPH----LPS-------SKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
            C+TT+ +  + D L P      PS       S   G+LPE+L++L+  R+  K  +K  +
Sbjct: 607  CYTTLLQGGTKDKLSPEDYVKTPSQNFFVKESVRKGLLPEILESLLSARKKAKNDLKNET 666

Query: 974  G-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN 1032
               K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  +V+  
Sbjct: 667  DPFKKNVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQVVEQK 726

Query: 1033 LNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLY 1083
             N E        VIYGDTDS+M+  G++ +A+A  +     + V  K+ K ++++ + +Y
Sbjct: 727  YNTENGYKHNAVVIYGDTDSVMVKFGVETLAEAMELGRDAAEYVTSKFVKPIKLEFEKVY 786

Query: 1084 KRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSC 1143
               LL+ KK+YA   + F     ++ ++ KG++ VRRD + L   + + CL ++L +R  
Sbjct: 787  FPYLLINKKRYAG--LYFTRPEQHDKMDCKGIETVRRDNAPLVANMMNTCLQKLLIDRDP 844

Query: 1144 EDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG 1203
               VE       ++  D+   ++ + + VITK LTK       A  Q HV++A ++KQ  
Sbjct: 845  NGAVEYAK----QIISDLLCNRIDISQLVITKELTKTDY----AAKQAHVELANKMKQRD 896

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
              T    GD VPY+I      S+  +     +A  P  +   +    ID +YY   Q+  
Sbjct: 897  AGTAPKLGDRVPYVI-----ISAAKNTPAYMKAEDP--IYVLENSIPIDSNYYLENQLSK 949

Query: 1264 VVSRLCASIEGTSPERL 1280
             + R+ + I G   E +
Sbjct: 950  PLLRIFSPILGEKAESI 966


>gi|379318583|pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
 gi|379318584|pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
 gi|379318587|pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
          Length = 775

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 180/652 (27%), Positives = 294/652 (45%), Gaps = 110/652 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ R +  + + D D++V +N   FD   L  RA+   +  +    IGR      
Sbjct: 185  SSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT----IGR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            PK+++           G M+ +   GR+  D +      +   +Y+L  + +    K ++
Sbjct: 239  PKMQR----------IGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKE 288

Query: 756  EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTL 814
            +V   ++ K +++ E+L  + +Y   DA  + EL      LP+  QL+ + G  LW  + 
Sbjct: 289  KVYADEIAKAWESGENLERVAKYSMEDAKATYEL--GKEFLPMEIQLSRLIGQPLWDVS- 345

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            + +    VE+ LL     +  + P                                    
Sbjct: 346  RSSTGNLVEWFLLRKAYERNEVAP------------------------------------ 369

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
            N  S  ++++  R  +Y GG V EP+KGL+D  I+ LDF +LYPSII  +N+       S
Sbjct: 370  NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWDD-IVYLDFIALYPSIIITHNV-------S 420

Query: 935  PDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
            PD L             V H       G +P LL +L++ R+ +KT MK T   ++   L
Sbjct: 421  PDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKMKETQDPIEKILL 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+KL ANS YG  G++ +R+Y K  AE +T  GR+ +      ++     +V+Y 
Sbjct: 481  DYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYI 540

Query: 1041 DTDSI--MIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I  G  +  K KA+  + ++ +N K    LE++ +G YKR   + KK+YA +
Sbjct: 541  DTDGLHATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K      VI R GL++VRRDWS ++KE     L  IL     E+ V  +   + K 
Sbjct: 599  DEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK- 650

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
               + + ++  EK  I + +T+P   Y      PHV VA +L   G       G  + YI
Sbjct: 651  ---LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            +    G        I+ RA   +E      K+  D +YY   Q+ P V R+ 
Sbjct: 704  VLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746


>gi|345564490|gb|EGX47452.1| hypothetical protein AOL_s00083g388 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1099

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 186/699 (26%), Positives = 318/699 (45%), Gaps = 98/699 (14%)

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRL 692
            LC  S E  +L      L ++D DV++G+NI+ FD   LL RA+  +V     W+++   
Sbjct: 355  LCEFSREDQMLRAWTKFLQEVDPDVIIGYNIANFDFPYLLERAETLKVKDFPFWTRLNGT 414

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQL 750
            K          + +   G      +   GR+  D   L  RD  LR  SY+L  ++   L
Sbjct: 415  KSEARASTFSSKQM---GNRESKTTNTNGRIQLDVLQLVQRDYQLR--SYTLNSVSAHFL 469

Query: 751  NKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
            N+ +++V    + ++F  T ES   L  Y   DA+L   LM  L  L    ++  ++G  
Sbjct: 470  NEQKEDVHHTMITELFNGTPESRRRLAVYCLKDAYLPQRLMDKLMCLINYAEMARVTGVP 529

Query: 810  WGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            +   L  AR Q+V++L  L      +  +VP++          +Q+   G ++       
Sbjct: 530  FNFLL--ARGQQVKFLSQLFRKAGEQSLVVPNR----------EQKVGGGGDEEQ----- 572

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                                   Y G  V+EP +G Y + +  LDF SLYPSI+  +N+C
Sbjct: 573  -----------------------YEGATVIEPTRGFYKEPVATLDFASLYPSIMMAHNLC 609

Query: 928  FTTVER-----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +TT+ +                 +P G V  + +S   G+L  + ++L+  R+  K  +K
Sbjct: 610  YTTLTKQEHMDKMGMKEGEDYHVTPTGDV-FVNTSVRKGLLVTIFEDLLGARKRAKNDLK 668

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              +   K   L+ +Q ALK++ANS+YG  G +N +     +A   T  GRE++ +T   V
Sbjct: 669  NETDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCLAIASSCTSYGREMIEATKAEV 728

Query: 1030 QNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +    +        +VIYGDTDS+M+  G  D+ K  A+  +    V+ K+   ++++ +
Sbjct: 729  EKRYTIANGYSHDAQVIYGDTDSVMVKFGPKDLKKVMAMGEEAAAFVSSKFINPIKLEFE 788

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD   L + V +  L +IL +
Sbjct: 789  KVYFPYLLINKKRYAG--LYWTNPNKYDKMDSKGIETVRRDNCRLVQTVIETVLKKILID 846

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            +  ED  ++    ++    D+   +V +   VITK L+K  E Y  A  Q HV++A R++
Sbjct: 847  QD-EDGAQAYVKDMI---SDLLQNKVDMSNLVITKALSK--EEY--AAKQAHVELAERMR 898

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    +  + GD V Y+I    G       G     +  D +   +    ID  YY  QQ
Sbjct: 899  KRDAGSAPTLGDRVAYVIVKGAG-------GAKNYEKSEDPIYVLEHNVPIDTKYYLEQQ 951

Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETM 1299
            +   + R+   I G   +R    L  D ++  S  + TM
Sbjct: 952  LAKPLHRIFEPILGA--KRADQLLTGDHTRTISVAAPTM 988


>gi|340714996|ref|XP_003396007.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 1
            [Bombus terrestris]
          Length = 1090

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 304/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E+ +L +    + +LD D+  G+NI+ FD   L++RA+   V    +  
Sbjct: 350  VGCQVLSFEK-EQKMLEKWADFVRQLDPDIFTGYNINNFDFTYLINRAKHLNVKDFYF-- 406

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K   +  + K +       G          GR+  D  L      +  SY+L  ++
Sbjct: 407  LGRIK--NIKSVIKTQVFLSKQMGRRENKSINFEGRVPFDLLLVLVRDYKLRSYTLNAVS 464

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 465  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 523

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                          
Sbjct: 524  VTGVSICSLLTRGQQIKVVSQLLRKTREKGYLIPV------------------------- 558

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             HR       + G  V+EPK+G Y   I  LDF+SLYPSII  +
Sbjct: 559  -----------------HRGQASDEQFEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAH 601

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +    +   + S   T               G+LPE+L+NL+  R+  K  +
Sbjct: 602  NLCYTTLLKRNTQIKLKIDSDDITVTPSDSQFVKATLRKGILPEILENLLTARKAAKAEL 661

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 662  KKETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQE 721

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +         V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 722  VEGQYCVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 781

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 782  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 839

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + V+TK LTK       A  Q HV++A ++
Sbjct: 840  DRNPNDAL----NYAKQIISDLLCNRIDISQLVVTKELTKTDY----AAKQAHVELAAKM 891

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  + + +    ID +YY  
Sbjct: 892  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDPIYVLENNVP--IDTNYYLE 943

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 944  NQLAKPLVRIFEPILGEKAESL 965


>gi|3387874|gb|AAC72338.1| DNA polymerase alpha [Giardia intestinalis]
          Length = 990

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 159/562 (28%), Positives = 260/562 (46%), Gaps = 91/562 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  L   L   L   + D+++GHNI     + + H        S   + +  L R   P+
Sbjct: 331  ELQLYEELSKVLMHFNPDIIMGHNIYFHLYNTMWHSRSCLTTDSFKNTILAGLSRLN-PR 389

Query: 700  LRKGRTIF----GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            + +   +F     + +S  +M+ I GRLL D      +   +   +    A + L K   
Sbjct: 390  ILRIENLFKTFQAARSSWHVMNTIHGRLLMDLERGISEFSTDTKLTTIDYAASSLLKRDL 449

Query: 756  EVGPHDVL-------KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
             + P   L         F+T + + ELI   E  A + +     L+ +PLT +++ ++  
Sbjct: 450  TLTPPSHLGSKLKAGAQFKT-QVIPELI--AEILALIGIANA--LNYIPLTCRISQLTAL 504

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
             W       RA+R E L+L+ F    YI+PD            +   H    ++ +E   
Sbjct: 505  PWQLVCSIGRARRAESLILYNFFVMPYILPDT-----------EYKTHEQSAKSHDEFRP 553

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
            +D     DT+ +   + + G  Y GG V++P  G +DK +++LDFNSLYP+II+EY++CF
Sbjct: 554  KD-----DTAADATEEARHGAGYEGGYVMDPVAGFHDKIVIVLDFNSLYPNIIREYSLCF 608

Query: 929  TTVERS--------------PDGLVPHLPSS-------------------KTTGVLPELL 955
            TT++                P GL+ HL +                      T +LP+++
Sbjct: 609  TTLDPQNYVTWPDPTNTTDDPSGLI-HLHADPQDTWNQTIEEEVRASKQISHTVILPKII 667

Query: 956  KNLV----------QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              L+          Q  R ++         +++ L+I Q A+KL AN+MYG LG+   RF
Sbjct: 668  ARLITHETGHKEKNQGPRAMQVKDDKTISQRLKMLEISQLAIKLCANAMYGSLGYQYGRF 727

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD--------IAKA 1057
            Y   +A  I  +GR  L    ++ +     +VIYGDTDSIMI + I+         +A+ 
Sbjct: 728  YCPHVAARIPARGRLELTRASNIAKQQ-GYQVIYGDTDSIMIKTNIEYNKSEKHKIMAQV 786

Query: 1058 KAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV-IERKGLD 1116
            KAIA  +   V +  K L++ LD ++ + LLL+KKKY A ++ F D   + V +E KGLD
Sbjct: 787  KAIATTISSRVGEDRKYLQLGLDYIFIKYLLLQKKKYPATRL-FPD---FSVALEYKGLD 842

Query: 1117 MVRRDWSLLSKEVGDFCLSQIL 1138
            +VRRDW  +S+ +    L  I+
Sbjct: 843  LVRRDWCPISRTISKRALEIIM 864


>gi|392589878|gb|EIW79208.1| hypothetical protein CONPUDRAFT_138364 [Coniophora puteana RWD-64-598
            SS2]
          Length = 1096

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 211/818 (25%), Positives = 346/818 (42%), Gaps = 135/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  KV G +W+ I   K+   P   + S C+ E+T      I      K    + P+ 
Sbjct: 243  FMIDTKVVGMNWIEIPAGKYKLVPQKDKKSTCQLELTTRHDSFISHPPDGKW-QTIAPLR 301

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            V + ++     K +F + Q    I  A++V         P + + +      SH      
Sbjct: 302  VLSFDIECAGRKGIFPEAQVDPVIQIANMVTIQGE--SQPFIRNIFTL-NTCSHIV---- 354

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
               G   M FN EA                    +LN     + ++D DV++G+NIS FD
Sbjct: 355  ---GSQVMSFNDEAE-------------------MLNAWSQFIAEVDPDVIIGYNISNFD 392

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
               L  RA+   + +  + + GR+K   + +         FG   S   +  I GRL  D
Sbjct: 393  FPYLFDRAK--HLGAKQFPQFGRMKGWAAAIKDTHFSSKAFGQRDSKEAL--IHGRLQLD 448

Query: 727  T--FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETD 782
               F+     LR  SY+L  +    L + +++V  H V+   Q    ES   L  Y   D
Sbjct: 449  VLQFMQREHKLR--SYTLNSVCAQFLGEQKEDVH-HSVITELQNGGPESRRRLAVYCLKD 505

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A+L   LM  L       ++  ++G  +   L   ++ +V   L      + Y +P    
Sbjct: 506  AYLPQRLMDKLMCFVNYIEMARVTGVPFNYLLSRGQSIKVLSQLYRRANEEGYAIP---- 561

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                          F  + S            Y G  V+EPKKG
Sbjct: 562  -----------------------------AFKGEGSDEQ---------YEGATVIEPKKG 583

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDGL-----VPHLPSSKT-------- 947
             YD  I  LDF+SLYPSI+  +N+C+TT+  +++ D L     V ++ +           
Sbjct: 584  YYDAPIATLDFSSLYPSIMMAHNLCYTTLLDKKTIDRLELVKDVDYIQTPNNDFFATAKM 643

Query: 948  -TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+LP +L++L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  + 
Sbjct: 644  RKGLLPSILEDLIGARKRAKADLKKETDTFKRAVLDGRQLALKISANSVYGFTGATIGKL 703

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKA 1057
               P++   T  GR+++  T   V+           N EVIYGDTDS+M+  G  D+ + 
Sbjct: 704  PCLPISSSTTSYGRQMIEKTKQEVEAEFCIANGHAHNAEVIYGDTDSVMVKFGPSDLREV 763

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
             A+  +    V  K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++
Sbjct: 764  MAMGAQAADFVTAKFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTKPEKYDKMDSKGIE 821

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD   L   V + CL ++L +R     V+   +   K+  D+   +V + + VITK 
Sbjct: 822  TVRRDNCRLVSTVIETCLHKMLIDRD----VKGAEDYTKKMISDLLLNKVDMSQLVITKA 877

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            L K       A  Q HV++A R++Q    +  + GD V Y+I   +G       G A   
Sbjct: 878  LAKADY----AAKQAHVELAERMRQRDAGSAPALGDRVAYVII--KGMK-----GAAAYE 926

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 927  KSEDPLFVLENNIPIDTKYYLENQLSKPLMRIFEPILG 964


>gi|427792855|gb|JAA61879.1| Putative dna polymerase type-b family, partial [Rhipicephalus
            pulchellus]
          Length = 1003

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 184/682 (26%), Positives = 311/682 (45%), Gaps = 99/682 (14%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
             S AG  VLC +  ER LL R    L ++D D++ G+NI  FD   L++RA+  +V   +
Sbjct: 262  TSIAGCEVLCFQF-ERELLKRWSDFLREVDPDIITGYNIQNFDFPYLMNRAKTLQV--DL 318

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREV---SY 740
            +  +GR++  +   L K   +     G     +  + GR+  D     + LLR+    SY
Sbjct: 319  FPFLGRIRNCK--TLLKDAIMQSKQMGRRENKVVTMEGRVQFDLL---QVLLRDYKLRSY 373

Query: 741  SLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            +L  ++   L + +++V  H ++   Q  T ++   L  Y   DA L + L+  L  +  
Sbjct: 374  TLNAVSYHFLQEQKEDVQ-HSIITDLQNGTDQTRRRLAVYCLKDAMLPLRLLDKLMSVIN 432

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
              ++  ++G              + YLL                  ++ K+  Q      
Sbjct: 433  YMEMARVTG------------VPMTYLLSRG---------------QQIKVVSQLLRKAA 465

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
            E   V  + + +A                G  + G  V+EP KG Y   I  LDF+SLYP
Sbjct: 466  EQDLVMPVVHSEA----------------GEDFEGATVIEPVKGFYSVPIATLDFSSLYP 509

Query: 919  SIIQEYNICFTTVE--------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            SI+  +N+C+TTV               R+P G    + +S   G+LPE+L++L+  R+ 
Sbjct: 510  SIMMAHNLCYTTVLDNRQRELLKPDQFIRTPSG-DHFVKASVRKGLLPEILEDLLSARKR 568

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             KT +K  +   + + LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++ 
Sbjct: 569  AKTDLKNETDPFRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLAISKSVTAFGRTMIE 628

Query: 1024 STVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+           + +VIYGDTDS+MI  G + + KA  +  +    V  K+ + 
Sbjct: 629  KTKQEVEARYTRANGYEHDAKVIYGDTDSVMIRFGTNSLEKAMELGREAATYVTAKFVRP 688

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            + ++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   + + CL
Sbjct: 689  INLEFEKVYYPYLLINKKRYAG--LLYTRPETYDKMDCKGIETVRRDNCPLVANLINTCL 746

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +IL  R  +  VE    ++     D+   +V + + VITK LTK    Y  A  Q HV+
Sbjct: 747  ERILINRDPDGAVEFAKQTI----ADLLCNRVDISQLVITKELTKNDGEY--AAKQAHVE 800

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+++    +  + GD VPY+I         +S G A   +  D +   +    ID  
Sbjct: 801  LAHRMRKRDAGSAPNLGDRVPYVIV-------AASKGTAAYLKSEDPMYVLEHSVPIDTQ 853

Query: 1255 YYASQQIHPVVSRLCASIEGTS 1276
            YY   Q+   + R+   I G S
Sbjct: 854  YYLENQLSKPLLRIFEPILGES 875


>gi|150866455|ref|XP_001386065.2| DNA polymerase delta catalytic subunit (DNA polymerase III)
            [Scheffersomyces stipitis CBS 6054]
 gi|149387711|gb|ABN68036.2| DNA polymerase delta catalytic subunit (DNA polymerase III)
            [Scheffersomyces stipitis CBS 6054]
          Length = 1070

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 242/991 (24%), Positives = 414/991 (41%), Gaps = 176/991 (17%)

Query: 329  VDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPL 388
            +DD   + F  LDA E   G      Y FG  + G  H   C V   +      +P G  
Sbjct: 79   IDD---VSFQQLDAEEFQIGDYTIARY-FGITEEG--HSVLCNVTGFVHYFYVPVPKG-- 130

Query: 389  FQTDEIMK-----LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
            F  D+ +      L  + E      +A ++ +      +KT      +N N  N      
Sbjct: 131  FYKDQHLDQFSSYLRANYEGVENIELALKESIWGYNKSVKTPFFKFFIN-NTKNI----T 185

Query: 444  KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
            K R AF + EI             F++   P ++  +N   LL          ++  KV 
Sbjct: 186  KLRSAFERGEIR------------FENLFPPQNVSYDNINYLLR--------LMIDCKVT 225

Query: 504  GPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-- 559
            G SW+++   KFS   +  +VS C+ E +++  KD+    S     ++ P+ + + ++  
Sbjct: 226  GMSWVTLPKGKFSLVHSNDKVSTCQIECSINY-KDLISHPSEGEWLKMAPLRILSFDIEC 284

Query: 560  ---KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
               K +F + +    I  A+VV  H              +P + + FTV         P+
Sbjct: 285  AGRKGIFPEAEHDPVIQIANVVSKHGES-----------RPFVRNVFTV-----NTCSPI 328

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
                         GS +   E  E  L+N     +  +D+DV++G+N + FD+  LL RA
Sbjct: 329  ------------IGSQIFEHEKEEDMLMNWKDF-VVSVDADVIIGYNTANFDIPYLLDRA 375

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRD 733
            +   + +  +    RLK S   K     ++F S   G     +  I GR+  D     + 
Sbjct: 376  KALGLRN--FPFFSRLKNS---KQEAKDSVFSSRAYGTRENKVVNIDGRMQLDLLQFIQR 430

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMF 791
              +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y   DA+L + L+ 
Sbjct: 431  EYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTSETRRRLAVYCLKDAYLPLRLLD 489

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKM 849
             L  L    ++  ++G  +   L  AR Q+++ +  L      +  ++P+  +       
Sbjct: 490  KLMCLVNYTEMARVTGVPFSYLL--ARGQQIKVISQLFRKCLEEDIVIPNMKS------- 540

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                           E TNE+                    Y G  V+EP +G YD  I 
Sbjct: 541  ---------------EGTNEE--------------------YEGATVIEPSRGYYDVPIA 565

Query: 910  LLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPE 953
             LDF+SLYPSI+  +N+C+TT+                 R+P+G    +   K  G+LP 
Sbjct: 566  TLDFSSLYPSIMMAHNLCYTTLLNIQTIKAFNLTEDDYTRTPNGDY-FVKDHKKQGILPT 624

Query: 954  LLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++ 
Sbjct: 625  ILNELLTARKKAKADLKKETDPFKRDVLNGRQLALKISANSVYGFTGATIGKLPCLAISS 684

Query: 1013 LITQQGREILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
             +T  GRE++  T + VQ           + +VIYGDTDS+M+  G  D+     +  + 
Sbjct: 685  SVTAFGREMIEKTKNEVQEFYSKKNGYPYDAQVIYGDTDSVMVKFGYQDLETCMKLGEEA 744

Query: 1065 IQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
               V+ K+ K ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD  
Sbjct: 745  ANYVSTKFKKPIKLEFEKVYFPYLLINKKRYAGLYWTRPDK--FDKMDTKGIETVRRDNC 802

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L + V    L  IL +R  E     +  ++     D+   +V L + VITK   K    
Sbjct: 803  RLVQNVITKVLEFILEDRDVEKAQRFVKQTIA----DLLQNRVDLSQLVITKAYAK---- 854

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            +  A  Q HV++A R+K+    +  + GD V Y+I    G+            +  D L 
Sbjct: 855  HDYAAKQAHVELAERMKKRDAGSAPTLGDRVAYVIIKGSGSDKNYE-------KSEDPLY 907

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +    ID+ YY   Q+   + R+   I G
Sbjct: 908  VLENSLPIDVKYYLDNQLTKPLERIFNPILG 938


>gi|125977976|ref|XP_001353021.1| GA19253 [Drosophila pseudoobscura pseudoobscura]
 gi|54641772|gb|EAL30522.1| GA19253 [Drosophila pseudoobscura pseudoobscura]
          Length = 1092

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 180/685 (26%), Positives = 309/685 (45%), Gaps = 100/685 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD+  L++RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDIPYLINRAAHLKVKN--FEYL 405

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLA 746
            GR+K        +       G          GR+  D       LLRE    SY+L  ++
Sbjct: 406  GRIKNIRSVIKEQVLQSKQMGRRENQYVNFEGRVPFDLLFV---LLREYKLRSYTLNAVS 462

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  
Sbjct: 463  YHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMAR 521

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   + K YI+P               +  G +++   
Sbjct: 522  VTGVSLECLLTRGQQIKVLSQLLRKAKTKGYIMPS-------------YTPQGSDEQ--- 565

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EPK+G Y   I  LDF SLYPSI+  +
Sbjct: 566  --------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMAH 599

Query: 925  NICFTTVE--------RSPDGL----VPHLPSSKT-------TGVLPELLKNLVQRRRMV 965
            N+C+TT+         R  DGL    V   P++          G+LPE+L++L+  R+  
Sbjct: 600  NLCYTTLVLGGSREKLREKDGLQDEQVVRTPANNYFVKSEVRRGLLPEILESLLAARKRA 659

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  
Sbjct: 660  KNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEL 719

Query: 1025 TVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T + V+++   E        VIYGDTDS+M++ G+  + ++  +  +  + V+ K+   +
Sbjct: 720  TKNEVESHYTRENGYENDAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSAKFVHPI 779

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + F     Y+ ++ KG++ VRRD S L   + + CL 
Sbjct: 780  KLEFEKVYYPYLLINKKRYAG--LYFTRPEAYDKMDCKGIETVRRDNSPLVANLMNSCLQ 837

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            ++L ER  +  V        +V  D+   ++ + + VITK L K       A  Q HV++
Sbjct: 838  KLLIERDPDGAV----TYAKQVIADLLCNRIDISQLVITKELAKTDY----AAKQAHVEL 889

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A ++K+    T    GD VPY+IC        ++      A+  D L   +    ID  Y
Sbjct: 890  AAKMKKRDPGTAPKLGDRVPYVIC-------AAAKNTPAYAKAEDPLYVLENSVPIDATY 942

Query: 1256 YASQQIHPVVSRLCASIEGTSPERL 1280
            Y  QQ+   + R+   I G   E +
Sbjct: 943  YLEQQLSKPLLRIFEPILGEKAESI 967


>gi|302308438|ref|NP_985361.2| AFL189Wp [Ashbya gossypii ATCC 10895]
 gi|299790630|gb|AAS53185.2| AFL189Wp [Ashbya gossypii ATCC 10895]
 gi|374108589|gb|AEY97495.1| FAFL189Wp [Ashbya gossypii FDAG1]
          Length = 1092

 Score =  188 bits (477), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 224/886 (25%), Positives = 386/886 (43%), Gaps = 158/886 (17%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++   K++  P  +++S C+ E++++  KD+    +    +   P+ + + ++
Sbjct: 259  IVGMSWITLPKGKYAMIPKNKKISTCQLEVSINY-KDLISRPADSDWSHSAPLRILSFDI 317

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      VF + +    I  A+VV           +A E  KP + + FTV         
Sbjct: 318  ECAGRVGVFPEPEVDPVIQIANVVS----------IAGE-SKPFIRNVFTV-----DTCA 361

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            P+             GS +   E+ E A+L      L ++D DV++G+N + FDL  L++
Sbjct: 362  PI------------TGSQIFEHET-EEAMLKHWRDFLVEVDPDVIIGYNTTNFDLPYLIN 408

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS---CIAGRLLCDTFLCS 731
            RA    V S  +   GRL  S   K     T+F S A     S    I GRL  D F   
Sbjct: 409  RAAALNVSS--FPYFGRLVNS---KQVIKETVFSSKAHGTRESKSINIEGRLQLDIFQFV 463

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMEL 789
            R   +  SY+L  ++   L + +++V  H ++        E+   L  Y   DA+L + L
Sbjct: 464  RREYQLRSYTLNSVSAHFLGEQKEDVH-HSIIASLHRGDSETRRRLAVYCLKDAYLPLRL 522

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +  L  L    ++  ++G  +   +   +  +V   L         I+P+          
Sbjct: 523  LEKLMALVNYTEMARVTGVPFPYLITRGQQIKVISQLYRKCLQIDTIIPNM--------- 573

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                  HG                    +H+D +       Y G  V+EP +G YD  I 
Sbjct: 574  ------HG--------------------NHSDDQ-------YQGATVIEPIRGYYDIPIA 600

Query: 910  LLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKTTGVLP 952
             LDFNSLYPSI+  +N+C+T      TV+R           +P+G    + S K  G+LP
Sbjct: 601  TLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYIITPNGDY-FVTSKKRRGILP 659

Query: 953  ELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +L+ L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++
Sbjct: 660  IILEELIAARQRAKGELKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLSIS 719

Query: 1012 ELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
              +T  GR ++ +T   V+    ++        V+YGDTDS+MI  G +++ +   +  +
Sbjct: 720  SSVTAYGRTMIETTKRAVEEKYTIKNGYKHDAIVVYGDTDSVMIKFGTNELKQTMELGAE 779

Query: 1064 VIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
                V+  +K  + ++ + +Y   LL+ KK+YA   + +     Y+ +++KGL  VRRD 
Sbjct: 780  AAAYVSSLFKHPINLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKLDQKGLASVRRDS 837

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   V +  L  IL ER+    ++ + N++    ED+   +  + K +I+KTL     
Sbjct: 838  CPLVSIVMNKILRMILIERNVPGALKFVENTI----EDLLQNKADISKLIISKTLA---- 889

Query: 1183 AYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA +P  
Sbjct: 890  --PNYTNAQPHAILAERMKKRD-GVGPNVGDRVDYVII-------GGNDKLYNRAENP-- 937

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
            L   +    +D  YY + Q+   V  + A I G   E+ A+ +      F  K  +  +S
Sbjct: 938  LYVLEQNIQLDSKYYLTTQLQNPVVSIIAPIIG---EKQANAM------FIVKSIKIATS 988

Query: 1302 DPSSSLLFAVGDEERYRGCE--------PLILSCPSCSSTFDCPAV 1339
            +    L+  +   +  +GC         PL  SC   S      AV
Sbjct: 989  NQKGGLMGFIKKVQTCKGCRGPLKKNEGPLCYSCKERSGELYLKAV 1034


>gi|322703524|gb|EFY95132.1| DNA polymerase delta catalytic subunit [Metarhizium anisopliae ARSEF
            23]
          Length = 1104

 Score =  188 bits (477), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 215/818 (26%), Positives = 361/818 (44%), Gaps = 124/818 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V  KV+G +W+        PA       +Y+I    P+++R  S+ +  AEVP + + 
Sbjct: 247  FMVDCKVQGMAWVE------APA------TRYKIV---PENLR-QSNCQIEAEVPYLDLI 290

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            A   +  + K   +  I+S  + C  +  I       E  +  ++    VV K  G   P
Sbjct: 291  AHKPEGKWAKMAPLR-ILSFDIECAGRKGI-----FPEANQDPVIQIANVVTKY-GEKKP 343

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
               N    D  S   +  +     E  +L+     L + D D+++G+NI+ FD   LL R
Sbjct: 344  FIRNVFCLDTTSSIVATQILEYQKEERMLSEWQQFLIRADPDIIIGYNIANFDFPYLLER 403

Query: 676  AQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCS 731
            A+  +V     WS++       +P  R   T F S   G      +   GRL  D     
Sbjct: 404  AKHLKVSGFEYWSRL-----PSVPS-RVKETNFSSKQIGNRDTKATNTNGRLQLDLLQLI 457

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELM 790
            +      SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM
Sbjct: 458  QRDHHLRSYTLNSVCAHFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLM 517

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETK 848
              LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P          
Sbjct: 518  DKLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIP---------- 565

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                                   N  +D S            Y G  V+EP +G YD  I
Sbjct: 566  -----------------------NIRSDASDEQ---------YEGATVIEPVRGYYDVPI 593

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPD-----GLV--------PHLPSSKTT----GVL 951
              LDF SLYPSIIQ +N+C+TT+ +        GLV        P+  +  TT    G+L
Sbjct: 594  ATLDFASLYPSIIQAHNLCYTTLVKDKKLIEKFGLVKDEDYIVTPNGDTFVTTKQRKGLL 653

Query: 952  PELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
             ++L+ L+  R+  K  + +     K   L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 654  AQILEELLTARKQAKRELAQETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEI 713

Query: 1011 AELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            A   T  GR+++  T D V+   N+        +VIYGDTDS+M+  G  D+A+A  +  
Sbjct: 714  ASSTTSFGRQMIERTKDEVEKKYNIANGYTHDAQVIYGDTDSVMVKFGTKDLAEAMKLGE 773

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD
Sbjct: 774  EASHYVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKYDKMDTKGIETVRRD 831

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL + V +  L  IL +R      E + +++  + ++    +V + K VITK LTK  
Sbjct: 832  NCLLVQTVIEKVLRMILIDRDVGGAQEYVKDTIASLLQN----KVDMSKLVITKALTK-- 885

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            + Y  A  Q HV++A R+K+    +  + GD V Y++          + G     +  D 
Sbjct: 886  DDY--AAKQAHVELAHRMKKRDAGSAPALGDRVAYVMV-------RGAAGAKNFEKSEDP 936

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
            L   +    ID  YY   Q+   + R+   I G +  R
Sbjct: 937  LYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGETKAR 974


>gi|354497678|ref|XP_003510946.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cricetulus
            griseus]
          Length = 1070

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 296/663 (44%), Gaps = 122/663 (18%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ              LK    P 
Sbjct: 370  EEDLLQAWANFILAMDPDVITGYNIQNFDLPYLISRAQT-------------LKVDRFPF 416

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L         G   G+ S I      D+   SR + R  S  ++ + + Q+         
Sbjct: 417  L---------GRVTGLRSNIR-----DSSFQSRQVGRRDSKVVSMVGRVQM--------- 453

Query: 760  HDVLKMFQT---LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             D+L +  T    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  
Sbjct: 454  -DMLTLLGTNWKEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL-- 510

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +R Q+V+ +                     +++ +Q    G+    V+    ED      
Sbjct: 511  SRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED------ 543

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-- 934
                          Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R   
Sbjct: 544  --------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGA 589

Query: 935  -------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQL 980
                   PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q L
Sbjct: 590  AQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVL 649

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--------N 1032
            D +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++        N
Sbjct: 650  DGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYN 709

Query: 1033 LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKK 1091
             N +V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ K
Sbjct: 710  ANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISK 769

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            K+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    
Sbjct: 770  KRYAGLLFSSQPDT-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAK 828

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
            +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S G
Sbjct: 829  D----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLG 882

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+   
Sbjct: 883  DRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEP 935

Query: 1272 IEG 1274
            I G
Sbjct: 936  ILG 938


>gi|324120726|dbj|BAJ78754.1| DNA polymerase delta catalytic subunit [Tenodera aridifolia]
          Length = 1030

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 183/680 (26%), Positives = 308/680 (45%), Gaps = 98/680 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL   + E  +L +    + ++D D+L G+NI+ FD+  L++RA    + ++ ++ +
Sbjct: 293  GSQVLSF-AKESEMLEKWAAFVREVDPDILTGYNINNFDIPYLINRAN--HLKANNFTYL 349

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS +          G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 350  GRIKNTRSVIKDTVLQSKQMGRRENKSVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 405

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q   +     L  Y   DA+L ++L+  L  +    ++ 
Sbjct: 406  SFHFLGEQKEDVH-HSIIADLQNGNATTRRRLAVYCLKDAFLPLKLLEKLMCIINYMEMA 464

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   R K Y++P     V+E +               
Sbjct: 465  RVTGVSLPSLLTRGQQIKVVSQLLRKAREKGYVIPAYGGGVQEEQ--------------- 509

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPKKG Y   I  LDF+SLYPSI+  
Sbjct: 510  ---------------------------YEGATVIEPKKGYYADPIATLDFSSLYPSIMMA 542

Query: 924  YNICFTTV----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            +N+C+TT+     R   GL P            +  S   G+LPE+L+NL+  R+  K  
Sbjct: 543  HNLCYTTLLQSGPREKLGLTPDQYIKTPASNYFVTKSVRKGLLPEILENLLAARKKAKAD 602

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K      K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 603  LKNEKDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQ 662

Query: 1028 LVQNNLN--------LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEID 1078
             V+ + N         EV+YGDTDS+M+  G+  + +A  +  +    V+ K+   ++++
Sbjct: 663  EVEQHYNRSNGYENDAEVVYGDTDSVMVKFGVKTVEEAMKLGREAADYVSAKFTPPIKLE 722

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL ++L
Sbjct: 723  FEKVYFPYLLISKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVANMMNTCLQKLL 780

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R     VE       +V  D+   ++ + + VITK LTK       A  Q HV++A +
Sbjct: 781  IDRDPNGAVEYAK----QVIADLLCNRIDISQLVITKELTKSDY----AAKQAHVELAAK 832

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +K+    T    GD VPY+I      S+  +     +A  P  +   +    ID  YY  
Sbjct: 833  MKKRDPGTAPKLGDRVPYVI-----ISAAKNTPAYMKAEDP--IFALENSVPIDSSYYLE 885

Query: 1259 QQIHPVVSRLCASIEGTSPE 1278
             Q+   + R+   I G   E
Sbjct: 886  NQLSKPLLRIFTPILGEKAE 905


>gi|322693697|gb|EFY85548.1| DNA polymerase delta catalytic subunit [Metarhizium acridum CQMa 102]
          Length = 1104

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 215/818 (26%), Positives = 360/818 (44%), Gaps = 124/818 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V  KV+G +W+        PA       +Y+I    P+++R  S+ +  AEVP + + 
Sbjct: 247  FMVDCKVQGMAWVE------APA------TRYKIV---PENLR-QSNCQIEAEVPYLDLI 290

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            A   +  + K   +  I+S  + C  +  I       E  +  ++    VV K  G   P
Sbjct: 291  AHKPEGKWAKMAPL-RILSFDIECAGRKGI-----FPEANQDPVIQIANVVTKY-GEKKP 343

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
               N    D  S   +  +     E  +L+     L + D D+++G+NI+ FD   LL R
Sbjct: 344  FIRNVFCLDTTSSIVATQILEYKKEDKMLSEWQQFLIRADPDIIIGYNIANFDFPYLLER 403

Query: 676  AQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCS 731
            A+  +V     WS++       +P  R   T F S   G      +   GRL  D     
Sbjct: 404  AKHLKVSGFEYWSRL-----PSVPS-RVKETNFSSKQIGNRDTKATNTNGRLQLDLLQLI 457

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELM 790
            +      SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM
Sbjct: 458  QRDHHLRSYTLNSVCAHFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLM 517

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETK 848
              LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P          
Sbjct: 518  DKLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIP---------- 565

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                                   N  +D S            Y G  V+EP +G YD  I
Sbjct: 566  -----------------------NIRSDASDEQ---------YEGATVIEPVRGYYDVPI 593

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSPD-----GLV--------PHLPSSKTT----GVL 951
              LDF SLYPSIIQ +N+C+TT+ +        GLV        P+  +  TT    G+L
Sbjct: 594  ATLDFASLYPSIIQAHNLCYTTLVKDKKLIEKFGLVKDEDYIVTPNGDTFVTTKQRKGLL 653

Query: 952  PELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
             ++L+ L+  R+  K  + +     K   L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 654  AQILEELLTARKQAKRELAQETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEI 713

Query: 1011 AELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            A   T  GR+++  T D V+   N+        +VIYGDTDS+M+  G  D+A+A  +  
Sbjct: 714  ASSTTSFGRQMIERTKDEVEKKYNIANGYTHDAQVIYGDTDSVMVKFGTKDLAEAMKLGE 773

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD
Sbjct: 774  EASHYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKYDKMDTKGIETVRRD 831

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL + V +  L  IL +R      E +  ++  + ++    +V + K VITK LTK  
Sbjct: 832  NCLLVQTVIEKVLRMILIDRDVSGAQEYVKETIANLLQN----KVDMSKLVITKALTK-- 885

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            + Y  A  Q HV++A R+K+    +  + GD V Y++          + G     +  D 
Sbjct: 886  DDY--AAKQAHVELAHRMKKRDAGSAPALGDRVAYVMV-------RGAAGAKNFEKSEDP 936

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
            L   +    ID  YY   Q+   + R+   I G +  R
Sbjct: 937  LYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGETKAR 974


>gi|340959854|gb|EGS21035.1| DNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1108

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 181/663 (27%), Positives = 303/663 (45%), Gaps = 102/663 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L ++D DV+ G+NI+ FD   LL RA+   VP    WS++  +K           T F S
Sbjct: 384  LVRVDPDVITGYNIANFDFPYLLDRAEHLNVPKFREWSRLKGVKSVARD------TNFSS 437

Query: 710  ---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
               G      + I+GRL  D     +      SY+L  + +  L + +++V    + ++F
Sbjct: 438  KQMGNRDTKATNISGRLQLDLLQLIQRDHHLRSYTLNSVCQHFLGEQKEDVHHSMITELF 497

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            + T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V++L
Sbjct: 498  EGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFL 555

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      +K ++P                                 N  +++S     
Sbjct: 556  SQLFRKALEQKLVIP---------------------------------NLRSESSEEQ-- 580

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +G YD  I  LDF SLYPSII  +N+C+TT      VE+    
Sbjct: 581  -------YEGATVIEPVRGYYDVPIATLDFASLYPSIIMAHNLCYTTLIKKKDVEKWNLK 633

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P+G +  + + +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 634  KDEDYIVTPNGDM-FVTTKQRKGLLAQILEELLAARKQAKKELAAETDPFKKAVLNGRQL 692

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEV 1037
            ALK++ANS+YG  G +N +     +A   T  GR+++  T + V+           + +V
Sbjct: 693  ALKISANSVYGLTGATNGKLPCLEIASSTTAFGRQMIMKTKEEVEKRYCIANGYSHDAQV 752

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G  D+ +A  +     + V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 753  IYGDTDSVMVKFGTRDLKEAMKLGQDASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG 812

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + +     ++ ++ KG++ VRRD  LL + V D  L  IL ++      E + +++  
Sbjct: 813  --LYWTRPEKFDKVDTKGIETVRRDNCLLVQTVIDKVLRMILIDQDVPGAQEYVKSTIA- 869

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK LTK  E Y  A  Q HV++A R+K+    +  S GD V Y
Sbjct: 870  ---DLLQNKIDMSKLVITKALTK--EDY--AAKQAHVELAQRMKKRDPGSAPSLGDRVAY 922

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            ++          + G     R  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 923  VMV-------KGATGSKNFERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILGEA 975

Query: 1277 PER 1279
              R
Sbjct: 976  KAR 978


>gi|379003208|ref|YP_005258880.1| DNA polymerase (pol2) [Pyrobaculum oguniense TE7]
 gi|375158661|gb|AFA38273.1| DNA polymerase (pol2) [Pyrobaculum oguniense TE7]
          Length = 786

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 182/652 (27%), Positives = 299/652 (45%), Gaps = 116/652 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R +L   +  +   D DV+VG+N + FD   L  RA+   VP     ++ RL  +    
Sbjct: 211  DRGVLRSFVEYVRSFDPDVVVGYNSNNFDWPYLAERAKAVGVPL----RVDRLGGAPQ-- 264

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT--QLNKDRKEV 757
                ++++G  +       + GR   D +    +       +L ++A+    + +D + +
Sbjct: 265  ----QSVYGHWS-------VLGRANVDLYNIVDEFPEIKLKTLDRVAEYFGVMRRDERVL 313

Query: 758  GP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P H + + ++       L +Y   D   +  L   L  LP   QL+++SG    +    
Sbjct: 314  IPGHKIYEYWRDPSKRPLLRQYVIDDVRSTYGLAERL--LPFLIQLSSVSGLPLDQVAAA 371

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +   RVE++LL        + P++                  E+R  E            
Sbjct: 372  SVGNRVEWMLLRYAYGLGEVAPNR------------------EEREYE------------ 401

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV----- 931
                          Y G +VLEPK GLY   +L+LDF+S+YP+++  YN+   T      
Sbjct: 402  -------------PYKGAIVLEPKPGLYSD-VLVLDFSSMYPNVMMRYNLSPDTYLEPGE 447

Query: 932  ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQ 984
               P+G+     V H    +  G +P++L+ LV  RR V+  MK       + + LD +Q
Sbjct: 448  PDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVALRRAVREEMKKYQPDTPEYRVLDERQ 507

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALK+ AN+MYG  G+  +R+Y K +AE +T   R IL+  +D  +  L + VIYGDTDS
Sbjct: 508  KALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIDYAR-RLGIVVIYGDTDS 566

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKD 1103
            + +  G D          K+ + V++KY  +EI +D  Y+++L  + KK+YA +    +D
Sbjct: 567  LFVKKGGD--------LEKLARYVDEKY-GIEIKVDKDYEKVLFTEAKKRYAGL---LRD 614

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G     I+  G ++VR DWS L+KEV    +  IL  R   +  + +   +  V E ++S
Sbjct: 615  GR----IDIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVIERLKS 670

Query: 1164 GQVALEKYVITKTLTK---PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            G+  L+  +I KTL K     +AYP     PHV+ AL LK+ GY  G   G T+ Y++  
Sbjct: 671  GKFDLDDLIIWKTLDKDLGEYKAYP-----PHVRAALILKKKGYKVG--RGTTIGYVVVK 723

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 S  S+         D+L K      ID+DYY  +Q+ P   R+   I
Sbjct: 724  GGEKVSERSLPYILV----DDLAK------IDVDYYIEKQVIPAALRIAEVI 765


>gi|156407049|ref|XP_001641357.1| predicted protein [Nematostella vectensis]
 gi|156228495|gb|EDO49294.1| predicted protein [Nematostella vectensis]
          Length = 1092

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 174/653 (26%), Positives = 300/653 (45%), Gaps = 98/653 (15%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GA 711
            D D++ G+NI  FDL  LL+RA    V  + +S +GR+      K     T F S   G 
Sbjct: 379  DPDIITGYNIVNFDLPYLLNRATALHV--NNFSLLGRIVAD---KSTVTSTTFQSKAYGK 433

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
                +  I+GR+  D       LLR+    SY+L  ++   L + +++V  H+++   Q 
Sbjct: 434  RENKVINISGRVQFDLLHV---LLRDYKLRSYTLNAVSFHFLQEQKEDVQ-HNIISDLQN 489

Query: 769  L--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
               ++   L  Y   DA L + L+  L  +    ++  ++G   G  L   +  +V   L
Sbjct: 490  GNDQTRRRLAIYCMKDAILPLRLLEKLMCVINYMEMARVTGVPMGYLLSRGQQIKVMSQL 549

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            L        ++P                                       +H    K +
Sbjct: 550  LRKTHQTDLVIP---------------------------------------AH----KAE 566

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-------ERSPDGLV 939
             G  YAG  V+EP KG Y+  I  LDF+SLYPSI+  +N+C+T++       E  PD  +
Sbjct: 567  AGEEYAGATVIEPNKGYYNIPIATLDFSSLYPSIMMAHNLCYTSLLHPSQVKETPPDQYI 626

Query: 940  P------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTAN 992
                    +  S   G+LPE+L++L+  R+  K  +K  +   K + LD +Q ALK++AN
Sbjct: 627  KTPSGNFFVKKSVRKGLLPEILEHLLTARKKAKADLKKETDPFKKKVLDGRQLALKISAN 686

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDS 1044
            S+YG  G    +     +++ +T  GR ++  T +LV+    +        +VIYGDTDS
Sbjct: 687  SVYGFTGAQVGKLPCLEISQSVTAFGRMMIERTKELVEAKYTVANGYKTDAKVIYGDTDS 746

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            +M+  G++ +A++  +  +  + V++ + K ++++ + +Y   LL+ KK+YA   + F  
Sbjct: 747  VMVRFGVETVAESMELGNEAAEYVSEHFVKPIKLEFEKVYFPYLLISKKRYAG--LYFTK 804

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
               ++ ++ KG++ VRRD   L   + + CL ++L ER+ +  VE       +V  D+  
Sbjct: 805  PDKHDKMDCKGIETVRRDNCPLVANLINACLKKLLIERNPQGAVEYTK----QVISDLLC 860

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             ++ + + VITK LTK  E Y  A  Q H ++A R+++    +    GD VPY+I     
Sbjct: 861  NRIDISQLVITKELTKTGEEY--AGKQAHSELAERMRKRDAGSAPKLGDRVPYVII---- 914

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
                 + G     +  D +   +    ID  YY   Q+   + R+   I G S
Sbjct: 915  ---AGAKGAKAYEKAEDPIYVLENNVPIDTGYYLENQLSKPLLRIFEPILGES 964


>gi|1027513|emb|CAA61369.1| DNA polymerase delta [Drosophila melanogaster]
          Length = 1092

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 182/687 (26%), Positives = 316/687 (45%), Gaps = 104/687 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  +L++    + ++D D+L G+NI+ FD   LL+RA   +V +  +  +
Sbjct: 349  GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRN--FEYL 405

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
            GR+K  RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  +
Sbjct: 406  GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q    ++      Y   DA+L + L+  L  +    ++ 
Sbjct: 462  SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRSAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + K +I+P               ++ G +++  
Sbjct: 521  RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 566  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598

Query: 924  YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +N+C+TT                    VER+P      + S    G+LPE+L++L+  R+
Sbjct: 599  HNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 658  RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717

Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+++         N  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+  
Sbjct: 718  EMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 778  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDT--YDKMDCKGIETVRRDNSPLVANLMNSC 835

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER  +  V  +     +V  D+   ++ +   VITK L K       A  Q HV
Sbjct: 836  LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID 
Sbjct: 888  ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY  QQ+   + R+   I G + E +
Sbjct: 941  TYYLEQQLSKPLLRIFEPILGDNAESI 967


>gi|312081845|ref|XP_003143198.1| DNA-directed DNA polymerase III [Loa loa]
 gi|307761639|gb|EFO20873.1| DNA-directed DNA polymerase III [Loa loa]
          Length = 1084

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 198/825 (24%), Positives = 369/825 (44%), Gaps = 135/825 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSS--SSKHVAEVPP 551
            F+    + G +W+++   K+      + +S C++E ++++  D+ + S  SS   + + P
Sbjct: 227  FMTDHNLVGCAWVTLPSKKYRIVTGKEMISHCQFECSINN-TDLVIHSPESSPRWSSIAP 285

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            + + + +++   N++    E  + +V+     +I   +      +P + + F +     G
Sbjct: 286  LRILSFDIECT-NRQGIFPEAHTDAVI-----QIANMVKIEGENEPFIRNCFVI-----G 334

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
               P+             GS ++  +S E  LLN+    +  +D D++ G+NI  FD   
Sbjct: 335  ETAPV------------IGSQIIVSKSEEE-LLNKWAEFVRIVDPDLITGYNIQNFDFPY 381

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRS-----EMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            ++ RA+  ++ S   + +GR+  S     EMP   K       G     ++ I GR++ D
Sbjct: 382  IVERARALKIESRA-TMLGRIPSSLSKVREMPLSSKQM-----GNRTNKVTNIEGRVVFD 435

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAW 784
             F       +  SYSL  ++   L + +++V  + ++   Q   +L    L  Y   DA+
Sbjct: 436  VFQVVLRDYKLRSYSLNSVSYHFLCEQKEDVD-YAMIADLQNGNALTRRRLAIYCMKDAY 494

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L ++L+  L  +    ++  ++G      L   +  +V   +L   ++  + +P      
Sbjct: 495  LPLKLLQKLMSVINYIEMARVTGVPLDYLLSRGQQVKVMSQILRKAKSMHFFLP------ 548

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                              V ++   D     DT             Y G  V++P +G Y
Sbjct: 549  ------------------VIDVVQPD-----DT-------------YEGATVIDPIRGFY 572

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSP-------DGLVPHLPSSK-------TTGV 950
            +  I  LDF SLYPSI+  +N+C+TT+ R P       D      PS+          G+
Sbjct: 573  NTPIATLDFASLYPSIMIAHNLCYTTLIRRPIASYNLSDSDFEVTPSNNRFVKPNIRHGL 632

Query: 951  LPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            LP++L++L+  R+  K  +K      +   L+ +Q ALK++ANS+YG  G S  +     
Sbjct: 633  LPQVLEDLLNARKQAKNDLKNEQDPFRRMVLNGRQLALKISANSVYGFTGASVGKLPCLE 692

Query: 1010 LAELITQQGREILRSTVDLVQNNL---------------NLEVIYGDTDSIMIHSGIDDI 1054
            +++ +T  GR++    +DL +N +               + +VIYGDTDS+M+  G+ D+
Sbjct: 693  ISQSVTAYGRQM----IDLTKNAVEEIYKEGYLDGKCPCDAQVIYGDTDSVMVKFGVKDV 748

Query: 1055 AKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
              A  +      EV+KK+   ++++ + +Y   LL+ KK+YA   + F     ++ I+ K
Sbjct: 749  KAAMELGLHAATEVSKKFIPPIKLEFEKVYSPFLLINKKRYAG--LYFTRPEKHDKIDCK 806

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GL+ VRRD   L  +V   CL ++L E      +E       KV  D+   ++ + + +I
Sbjct: 807  GLETVRRDNCPLVSKVLSTCLEKMLLEGDATSALEHAK----KVISDLLCNRIDISELII 862

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK LT+   AY  A  Q HV +A R+++    +    GD VPY+I      + G  V   
Sbjct: 863  TKELTRSSNAY--AAKQAHVVLAERMRERDSGSAPRLGDRVPYVI-----VAKGQKVPAY 915

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
            ++A  P  + + +    ID  YY   Q+   ++R+   + G   E
Sbjct: 916  EKAEDPIYVLQNNIP--IDTAYYLENQLAKPLARIFEPVLGDKAE 958


>gi|324120692|dbj|BAJ78737.1| DNA polymerase delta catalytic subunit [Thermobia domestica]
          Length = 1097

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 186/674 (27%), Positives = 307/674 (45%), Gaps = 97/674 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
            S E  +L +    + +LD D+  G+NI+ FDL  LL+RA+   V +  +  +GR+K  RS
Sbjct: 366  SKENEMLEKWADFVRELDPDIFTGYNINNFDLPYLLNRAKHLSVKNFHY--LGRIKDIRS 423

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             + +        G   +  I +   GR+  D  L      +  SY+L  ++   L + ++
Sbjct: 424  VVKEQVLQSKQLGRRENKSINT--EGRVPFDLLLVLVRDYKLRSYTLNAVSFHFLQEQKE 481

Query: 756  EVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H V+   Q    ++   L  Y   DA+L + LM  L  L    ++  ++G      
Sbjct: 482  DVH-HSVISDLQHGNSQTRRRLAVYCLKDAYLPLRLMDKLMCLINYMEMARVTGVPLSSL 540

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   LL   R K +++P   TY   T+               EE        
Sbjct: 541  LTRGQQIKVVSQLLRKAREKDFVIP---TYSGTTQ---------------EE-------- 574

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                             Y G  V+EPKKG YD  I  LDF+SLYPSI+  +N+C+T++  
Sbjct: 575  ----------------QYEGATVIEPKKGYYDIPIATLDFSSLYPSIMMAHNLCYTSLLQ 618

Query: 932  --------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
                           R+P G     PS +  G+LPE+L+NL+  R+  K  +K  +  L+
Sbjct: 619  PGMKEKLGLTPDQYTRTPAGNFFIKPSVR-KGLLPEILENLLAARKKAKADLKNETDPLR 677

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--- 1033
             + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+      
Sbjct: 678  RKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRYCVA 737

Query: 1034 -----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                 +  VIYGDTDS+MI  GI  + +A  +  +  + V+ K+ K ++++ + +Y   L
Sbjct: 738  NGYPHDAVVIYGDTDSVMIKFGIKTLEEAMELGKEAAEYVSSKFIKPIKLEFEKVYFPYL 797

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L  R  +  +
Sbjct: 798  LISKKRYAGLYFTKTDT--YDKMDCKGLETVRRDNCPLVANMMNTCLQKMLINRDPDGAL 855

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
                    +V  D+   ++ + + V+TK LTK       A  Q HV++A ++K+    T 
Sbjct: 856  AYAK----QVIADLLCNRIDISQLVVTKELTKSDY----AAKQAHVELANKMKKRDPGTA 907

Query: 1208 CSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
               GD VPY+ I   +GT +       Q+A  P  +   +    ID  YY   Q+   + 
Sbjct: 908  PKLGDRVPYVLIAAAKGTPA------YQKAEDP--IYVLENNIPIDSSYYLENQLSKPLI 959

Query: 1267 RLCASIEGTSPERL 1280
            R+   + G   E L
Sbjct: 960  RIFEPLLGDKAESL 973


>gi|448099944|ref|XP_004199250.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
 gi|359380672|emb|CCE82913.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
          Length = 1079

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 242/986 (24%), Positives = 419/986 (42%), Gaps = 176/986 (17%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYA-IPNGPLFQTDE 393
            + F  LDA E +    + +   FG  + G   +S    V+N     Y  +P G  F+   
Sbjct: 94   ITFQQLDAEENMVDG-LSSARFFGITEEG---YSVLCEVRNFLHYFYVPVPKG-FFRDSH 148

Query: 394  IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
            + + E   + +          L++   G    + +  L + V N   +  K R +F + E
Sbjct: 149  LSQFENYLKSNYQGICKAEICLKESIWGFNNNVKSPFLKIYVDN-TKNISKIRGSFERGE 207

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--S 511
            I             F++   P ++  +N   LL          +V  K+ G SWL++   
Sbjct: 208  IR------------FENLFPPQNVTYDNINYLLR--------LMVDCKISGMSWLTLPKG 247

Query: 512  KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKR 566
            K+      ++VS C+ E  +D  +DI          ++ P+ V + ++     K +F + 
Sbjct: 248  KYGMISDFEKVSTCQLECFIDY-RDIISHPPDGEWLKLAPLRVLSFDIECSGRKGIFPEA 306

Query: 567  QDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRN 626
               + I  A+VV             +   KP + + FTV             N  A    
Sbjct: 307  DQDSVIQIANVVS-----------KTGESKPFVRNVFTV-------------NTCA---- 338

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS +   E+ E  L++     +  +D D+++G+NI+ FDL  L+ RA+   +  S +
Sbjct: 339  SIIGSQIFEHETEEEMLMHWRNF-IVDVDPDIIIGYNIANFDLPYLIDRAKALGL--SDF 395

Query: 687  SKIGRLKRSEMPKLRK--GRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
               GRL     P +++    T+F S   G     +  I GR+  D     +   +  SY+
Sbjct: 396  PFFGRL-----PSVKQEVKDTVFSSRAYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYT 450

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L   LM  L  L   
Sbjct: 451  LNSVSAYFLGEQKEDVQ-HSIITDLQNGNRETRRRLAVYCLKDAYLPSRLMEKLMCLVNY 509

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G  +   L  AR Q++                         K+  Q     +E
Sbjct: 510  TEMARVTGVPFSYLL--ARGQQI-------------------------KVISQLFRKCLE 542

Query: 860  DRNV-----EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFN 914
            D  V      E TNED                    Y G +V+EP +G YD  I  LDF+
Sbjct: 543  DNIVIPNMKSEGTNED--------------------YEGAIVIEPVRGYYDVPIATLDFS 582

Query: 915  SLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNL 958
            SLYPSI+  +N+C+TT+                  +P+G    +   K  G+LP +LK L
Sbjct: 583  SLYPSIMMAHNLCYTTLLNKQTINALNLKEDDYTLTPNGDY-FIRDHKRKGILPTILKEL 641

Query: 959  VQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            +  R+  +  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  
Sbjct: 642  LTARKKARADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAF 701

Query: 1018 GREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            GRE++  T + VQ + ++        +VIYGDTDS+M+  G +D+        +    V+
Sbjct: 702  GREMIEKTKNEVQEHYSIKNGFPFDSQVIYGDTDSVMVRFGFNDLETCMKYGEEAASYVS 761

Query: 1070 KKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
             K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD   L + 
Sbjct: 762  TKFKDPIKLEFEKVYFPYLLINKKRYAG--LYWTSPQKFDKMDTKGIETVRRDNCRLVQN 819

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V    L  IL ER   DV ++ H  + +   D+   ++ L + VITK  +K    +  A 
Sbjct: 820  VITKVLEYILEER---DVAKAEH-YVKQTIADLLQNRIDLSQLVITKAYSK----HDYAA 871

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
             Q H+++A R+K+    +  + GD V Y+I      +S SS       +  D L   +  
Sbjct: 872  KQAHIELAERMKKRDPGSAPTLGDRVAYVI-----INSASS---KNYEKSEDPLYVLEHS 923

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEG 1274
              ID+ YY   Q+   + R+   I G
Sbjct: 924  LPIDVKYYLDNQLSNPLMRIFEPILG 949


>gi|156552223|ref|XP_001606357.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Nasonia
            vitripennis]
          Length = 1086

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 305/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E ++L +    + +LD D+  G+NI+ FD   L++RAQ   V    ++ 
Sbjct: 346  VGCQVLSFEK-ESSMLEKWADFIRQLDPDIFTGYNINNFDFPYLINRAQHLHVRD--FNY 402

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K   +  + K + +     G          GR+  D  L      +  SY+L  ++
Sbjct: 403  LGRIK--NIRSVIKNQVLQSKQMGRRENKFVNFEGRVPFDLLLVLVRDYKLRSYTLNAVS 460

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 461  YHFLQEQKEDVH-HSIISDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIIIYMEMAR 519

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL     + Y++P                +HG       
Sbjct: 520  VTGVSLSSLLTRGQQIKVVSQLLRKTIERGYLIP---------------VHHG------- 557

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            + ++E                     Y G  V+EP +G Y+  I  LDF+SLYPSII  +
Sbjct: 558  QGSDEQ--------------------YEGATVIEPLRGYYNDPIATLDFSSLYPSIIMAH 597

Query: 925  NICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            NIC+TT                + R+P      +  S   G+LPE+L+ L+  R+  K  
Sbjct: 598  NICYTTLLSPSAQNHYNLSNDDITRTPAN-SNFVKGSVRKGILPEILEQLLSARKAAKAD 656

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 657  LKKETDPLKQKVLDGRQYALKVSANSVYGFTGAQQGKLPCLEISGSVTAYGRTMIEKTKQ 716

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+ +   E        VIYGDTDS+M+  G+  I  A  +  +  + V  K+ K ++++
Sbjct: 717  EVETHYRKENGYDHDAVVIYGDTDSVMVKFGVKKIEDAMKLGKEAAEYVTSKFIKPIKLE 776

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + F     Y+ ++ KGL+ VRRD   L   + + CL ++L
Sbjct: 777  FEKVYFPYLLINKKRYAG--LYFTKPDKYDKMDCKGLETVRRDNCPLVANMMNTCLQKLL 834

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R+ +D ++       ++  D+   ++ + + V+TK LTK          Q HV++A +
Sbjct: 835  IDRNPDDAMDYAK----QIISDLLCNRIDISQLVVTKELTKTDY----TAKQAHVELAAK 886

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +K+    T    GD +PY+       S    V   Q+A  P  +   +    ID +YY  
Sbjct: 887  MKKRDAGTAPKLGDRIPYVF-----ISGPKGVPAYQKAEDP--IYVLENNIPIDTNYYLE 939

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 940  NQLSKPLVRIFEPILGDKAESL 961


>gi|395858290|ref|XP_003801504.1| PREDICTED: DNA polymerase delta catalytic subunit [Otolemur
            garnettii]
          Length = 1108

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 178/654 (27%), Positives = 302/654 (46%), Gaps = 99/654 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGA 711
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR+   RS +          G   
Sbjct: 389  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLRSNIRDSSFQSKQMGRRE 446

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            S  +   + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   Q 
Sbjct: 447  SKVV--SMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDLQN 500

Query: 769  L--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
               ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+V+ + 
Sbjct: 501  GNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQVKVV- 557

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
                                +++ +Q    G+    V+    ED                
Sbjct: 558  --------------------SQLLRQAMREGLVMPVVKSEGGED---------------- 581

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------------- 933
                Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R             
Sbjct: 582  ----YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQ 637

Query: 934  ---SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKL 989
               +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q ALK+
Sbjct: 638  FIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKV 696

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGD 1041
            +ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        V+YGD
Sbjct: 697  SANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGD 756

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA +   
Sbjct: 757  TDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFS 816

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
             +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V        +V  D
Sbjct: 817  SR-AEAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQ----EVISD 871

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  + GD VPY+I  
Sbjct: 872  LLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPNLGDRVPYVII- 928

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                  G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 929  ------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 976


>gi|261200399|ref|XP_002626600.1| DNA polymerase delta subunit [Ajellomyces dermatitidis SLH14081]
 gi|239593672|gb|EEQ76253.1| DNA polymerase delta subunit [Ajellomyces dermatitidis SLH14081]
          Length = 1106

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 207/823 (25%), Positives = 353/823 (42%), Gaps = 145/823 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +R+S C+ E T+   +D+    +    A++ P+ 
Sbjct: 251  FMIDTGISGMSWVEAPASKYHMLPMNERLSNCQIEATIHY-RDLIAHPNDGEWAKMAPLR 309

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +                           
Sbjct: 310  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRY--------------------------- 342

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
              G   P   N    D  S   +  L    +E  +L      L ++D DV++G+NI+ FD
Sbjct: 343  --GESKPFVRNVFVLDTCSLIVNTQLFEFDAEEKMLMAWRDFLEEVDPDVIIGYNIANFD 400

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +      WS++  +        R G   F S   G      + I+GR+ 
Sbjct: 401  FPYLLKRAEHLKCSGFHFWSRLKHIAS------RVGDARFSSKQIGNRESKSTNISGRIQ 454

Query: 725  CDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y   
Sbjct: 455  LDLLQLIQRDYQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTPDSRRRLAVYCLK 512

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++L  L      ++ ++P 
Sbjct: 513  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLSQLFRKALEQQLVIP- 569

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                            N  N+++            Y G  V+EP
Sbjct: 570  --------------------------------NLRNESTSEQ---------YEGATVIEP 588

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHL 942
             +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G     
Sbjct: 589  IRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIDTHQMKEGEDYIVTPNG--DRF 646

Query: 943  PSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
             +SK   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  G 
Sbjct: 647  CTSKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLTGA 706

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGID 1052
            +  R    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  G+ 
Sbjct: 707  TVGRLPCLPIASSTTSYGRQMIEKTKEEVEAKFTIANGYSHDAKVVYGDTDSVMVKFGMQ 766

Query: 1053 DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D+A+A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++
Sbjct: 767  DLAEAMKLGREAADFVSAKFIKPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KYDKMD 824

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KG++ VRRD   + + V +  L +IL +R     V +  N +     D+   ++ + K 
Sbjct: 825  TKGIETVRRDNCRMVQTVIETVLRKILIDRD----VGAAQNYVKDTISDLLQNKIDMSKL 880

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S      
Sbjct: 881  VITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAGGSKNYE-- 934

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  -----KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 972


>gi|241993500|ref|XP_002399458.1| DNA polymerase delta catalytic subunit, putative [Ixodes scapularis]
 gi|215492989|gb|EEC02630.1| DNA polymerase delta catalytic subunit, putative [Ixodes scapularis]
          Length = 1018

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 184/685 (26%), Positives = 307/685 (44%), Gaps = 111/685 (16%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AG  VLC +  E  LL +    +  +D DV+ G+NI  FD   L++RA+   V  + +  
Sbjct: 280  AGCEVLCFKR-EGELLQKWADFVRDVDPDVITGYNIQNFDFPYLINRAKHLNV--THFPY 336

Query: 689  IGRLKRSEMPKLRKGRTIFGS--------GASPGIMSCIAGRLLCDTFLCSRDLLREV-- 738
            +GR+        R  RTI           G     +  + GR+  D     + LLR+   
Sbjct: 337  LGRI--------RDSRTILKDSVMQSKQMGRRENKVVTMEGRVQFDLL---QVLLRDYKL 385

Query: 739  -SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSV 795
             SY+L  ++   L + +++V  H ++   Q  T ++   L  Y   DA L + L+  L  
Sbjct: 386  RSYTLNAVSYHFLQEQKEDVQ-HSIITDLQNGTDQTRRRLAVYCLKDAMLPLRLLDKLMS 444

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            +    ++  ++G      L   +  +V   LL     +  ++P                 
Sbjct: 445  VINYMEMARVTGVPLTYLLSRGQQIKVVSQLLRKAAEQDLVMP----------------- 487

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                 T H++      G  + G  V+EP KG Y   I  LDF+S
Sbjct: 488  ---------------------TVHSEA-----GEDFTGATVIEPAKGFYSVPIATLDFSS 521

Query: 916  LYPSIIQEYNICFTTVE--------------RSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
            LYPSI+  +N+C+TTV               R+P G    + +S   G+LPE+L++L+  
Sbjct: 522  LYPSIMMAHNLCYTTVLDSKQREALRADEFIRTPSG-DHFVKASVRKGLLPEILEDLLAA 580

Query: 962  RRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R+  KT +K  S   + + LD +Q ALK++ANS+YG  G    +     +++ +T  GR 
Sbjct: 581  RKKAKTDLKNESDPFRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLAISQSVTAFGRM 640

Query: 1021 ILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            ++  T   V+           + +VIYGDTDS+MI  G+D + KA  +  +    V +K+
Sbjct: 641  MIEQTKREVEERYTRANGYPADAKVIYGDTDSVMIRFGVDSLEKAMELGREAANFVTEKF 700

Query: 1073 -KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
             + + ++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD   L   + +
Sbjct: 701  VRPINLEFEKVYFPYLLINKKRYAGLLYTRPDA--HDKMDCKGIETVRRDNCPLVANLIN 758

Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
             CL +IL ER  +  V     ++     D+   +V + + VITK LTK    Y  A  Q 
Sbjct: 759  TCLEKILIERDPDGAVAFAKQTI----ADLLCNRVDISQLVITKELTKNDGEY--AAKQA 812

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI 1251
            HV++A R+++    +  + GD VPY+I         +S G A   +  D +   +    I
Sbjct: 813  HVELANRMRKRDAGSAPNLGDRVPYVIV-------AASKGTAAYLKSEDPIYVLENNVPI 865

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTS 1276
            D  YY   Q+   + R+   I G S
Sbjct: 866  DTQYYLDNQLSKPLLRIFEPILGES 890


>gi|156616275|ref|NP_002682.2| DNA polymerase delta catalytic subunit [Homo sapiens]
 gi|379030588|ref|NP_001243778.1| DNA polymerase delta catalytic subunit [Homo sapiens]
 gi|50403732|sp|P28340.2|DPOD1_HUMAN RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=DNA polymerase subunit delta p125
 gi|21885469|gb|AAM76971.1| polymerase (DNA directed), delta 1, catalytic subunit [Homo sapiens]
 gi|119592262|gb|EAW71856.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa, isoform
            CRA_a [Homo sapiens]
 gi|119592263|gb|EAW71857.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa, isoform
            CRA_a [Homo sapiens]
          Length = 1107

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|397485032|ref|XP_003813667.1| PREDICTED: DNA polymerase delta catalytic subunit [Pan paniscus]
          Length = 1107

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLRSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|380488089|emb|CCF37614.1| DNA polymerase delta catalytic subunit [Colletotrichum higginsianum]
          Length = 1103

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 206/822 (25%), Positives = 355/822 (43%), Gaps = 139/822 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K+ G SW+    +K+   P PQR S C+ E  + S  D+         +++ P+ 
Sbjct: 247  FMVDCKIFGMSWVEAPATKYQVIPQPQRQSNCQIEAEI-SYLDLIAHKPVGEWSKMAPLR 305

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F +      I  A+VV  +  K           KP + + F +   
Sbjct: 306  IMSFDIECAGRKGIFPEATHDPVIQIANVVTRYGEK-----------KPFVRNVFCL--- 351

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D  S   +  +     E  +L+     L K+D D+L+G+NI+ FD
Sbjct: 352  ---------------DTTSPIVATQILDFQKEEKMLSEWQKFLIKVDPDILIGYNIANFD 396

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +V     WS+I       MP  R   T F S   G      +   GRL 
Sbjct: 397  FPYLLDRAKHLKVSGFEYWSRI-----PSMPS-RAKETNFSSKQMGNRDSKATNTNGRLQ 450

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDA 783
             D     +      SY+L  +    L + +++V    + ++F  T ES   L  Y   DA
Sbjct: 451  LDLLQLVQRDHHLRSYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDA 510

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
            +L   LM  LS L    ++  ++G  +   L  +R Q+V+++  L      +K ++P+  
Sbjct: 511  YLPQRLMDKLSCLENYTEMARVTGIPFNFLL--SRGQQVKFISQLFRKALEQKLVIPN-- 566

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                       RS    E                               Y G  V+EP +
Sbjct: 567  ----------MRSEGSDEQ------------------------------YEGATVIEPTR 586

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLPS 944
            G YD  +  LDF SLYPSI+Q +N+C+TT      +E+           +P+G    + +
Sbjct: 587  GYYDVPVATLDFASLYPSIMQAHNLCYTTLVNKKAIEKFQLKKDEDYIVTPNGDT-FVTN 645

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  
Sbjct: 646  KQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTG 705

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIA 1055
            +     +A   T  GR+++  T + V+           + +VIYGDTDS+M+  G  D+ 
Sbjct: 706  KLPCLEIASSTTSFGRQMIMKTKEEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKDLP 765

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG
Sbjct: 766  EAMKLGEEAANHVSSKFVKPIKLEFEKVYYPYLLINKKRYAG--LYWTKPEKYDKMDTKG 823

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD  LL + V +  L  IL ++  +   + + +++     D+   +V + K VIT
Sbjct: 824  IETVRRDNCLLVQTVIEKVLRMILIDQDVQGAQDYVKDTIA----DLLQNKVDMSKLVIT 879

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K LTK  + Y  A  Q HV++A R+K+    +    GD V Y++            G   
Sbjct: 880  KALTK--DDY--AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMI-------KGPAGSKN 928

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
              +  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 929  YEKSEDPIYVLENNVPIDTRYYLDNQLAKPLGRIFEPILGET 970


>gi|237506873|gb|ACQ99189.1| family B DNA polymerase [Thermococcus guaymasensis]
          Length = 775

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 174/646 (26%), Positives = 292/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGIKFTL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++ + +++ E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YAEEITEAWESGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +YAGG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYAGGYVKEPERGLWEN-IVYLDFMSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P+  V H       G +P LL +L++ R+ +K  MK T   L+ + LD +Q+A+
Sbjct: 429  REYDVAPE--VGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATIDPLEKKILDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y +  AE +T  GRE + +T+  ++     +V+Y DTD    
Sbjct: 487  KILANSYYGYYGYAKARWYCRECAESVTAWGREYIETTIREIEEKFGFKVLYADTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 +    K  A + ++ +N K    LE++ +G Y R   + KKKYA +  + K    
Sbjct: 547  TIPGANAETVKKKAREFLKYINAKLPGLLELEYEGFYLRGFFVTKKKYALIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDIEEAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+    Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLRDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLRGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPADEFDPTKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|324120700|dbj|BAJ78741.1| DNA polymerase delta catalytic subunit [Ephemera japonica]
          Length = 1006

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 183/684 (26%), Positives = 316/684 (46%), Gaps = 109/684 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G+ VL    +E ALL      + ++D D++ G+NI+ FDL  +L RA+   + +  +  
Sbjct: 263  VGTQVLS-NQTESALLENWANFVREVDPDIITGYNINNFDLYYMLSRAK--HINARNFDF 319

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLT 743
            +GR+K   +  + K   I     G        + GR++ D  L    LLR+    SY+L 
Sbjct: 320  LGRIK--NIKTVAKDSMIQSKQMGRRENKKFNMEGRVIFDLLLV---LLRDYKLRSYTLN 374

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++   L + +++V  H ++   Q    ++   L  Y   DA+L ++L+  L  +    +
Sbjct: 375  AVSFHFLGEQKEDVH-HSIITDLQNGDDQTRRRLAVYCVKDAYLPLKLLEKLMCIINYME 433

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L   +  +V   LL   + K +++P   TY                  
Sbjct: 434  MARVTGVSLLCLLTRGQQIKVISQLLRKAKEKDFVIP---TY------------------ 472

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                  KG     Y G  V+EPKKG Y + I+ LDF+SLYPSI+
Sbjct: 473  --------------------SVKGSNDEQYEGATVIEPKKGYYKQPIVTLDFSSLYPSIM 512

Query: 922  QEYNICFTTVERSPDGL---------VPH----LPSSKTTGVLPELLKNLVQRRRMVKTW 968
              +N+C+TT+ ++ D L          P+    + +S   G+LPE+L++L+  R+  K  
Sbjct: 513  MAHNLCYTTLVQNKDRLKLSSEQYTITPNGDCFVKTSIRKGLLPEILESLLSARKKAKED 572

Query: 969  MKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K     L+ + LD +Q ALK++ANS+YG  G    +     ++   T  GR ++  T  
Sbjct: 573  LKKEMDPLRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLAISGSTTAYGRTMIEHTKT 632

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+   N+         VIYGDTDS+MI  G++D+  A A+  +  + V  K+ K ++++
Sbjct: 633  EVEQKFNMANGYAHDSVVIYGDTDSVMIKFGVEDLPAAMALGREAAEYVTSKFIKPIKLE 692

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   + + CL  +L
Sbjct: 693  FEKVYFPYLLINKKRYAG--LYYTKPETYDKMDCKGIETVRRDNCPLVANMMNTCLRMLL 750

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R  +  V+   + +     D+   ++ + + VITK L K  E Y     Q HV++A +
Sbjct: 751  IDRDPDGAVQFAKDMI----SDLLCNRLDISQLVITKELAK--EDY--KAKQAHVELAEK 802

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------ID 1252
            +K+    T    GD VPY+I             IA   + P   K  D  ++      ID
Sbjct: 803  MKKRDPGTAPKLGDRVPYVI-------------IAAPKKTPAYQKSEDPIYVLENNVSID 849

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
             DYY + Q+   + R+ + I G +
Sbjct: 850  TDYYLNNQLAKPLLRIFSPILGDT 873


>gi|410258776|gb|JAA17355.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Pan
            troglodytes]
 gi|410333287|gb|JAA35590.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Pan
            troglodytes]
          Length = 1107

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLRSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|195442888|ref|XP_002069178.1| GK23632 [Drosophila willistoni]
 gi|194165263|gb|EDW80164.1| GK23632 [Drosophila willistoni]
          Length = 1093

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 182/684 (26%), Positives = 315/684 (46%), Gaps = 102/684 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VLC    E  LL++    + ++D D+L G+NI+ FD+  L++RA   +V +  +  +
Sbjct: 350  GSQVLC-HDQETQLLDKWSSFVREVDPDILTGYNINNFDIPYLINRASHLKVKN--FEFL 406

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQLAK 747
            GR+K        +       G          GR+  D  F+  RD  LR  SY+L  ++ 
Sbjct: 407  GRIKNIRSVIKEQVLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLR--SYTLNAVSY 464

Query: 748  TQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  +
Sbjct: 465  HFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLGKLMAIVNYMEMARV 523

Query: 806  SGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            +G      L   R Q+++ L  LL   + K +I+P               ++ G +++  
Sbjct: 524  TGVPLESLL--TRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 566

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                       Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 567  ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 599

Query: 924  YNICFTTV-------ERSPDGLVP------------HLPSSKTTGVLPELLKNLVQRRRM 964
            +N+C+TT+       +    GL+              + +    G+LPE+L++L+  R+ 
Sbjct: 600  HNLCYTTLILGGSKDKLKNKGLIQDDQVECTPANNYFVKAELRRGLLPEILESLLAARKR 659

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K      K Q LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++ 
Sbjct: 660  AKADLKVEKDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIE 719

Query: 1024 STVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+ +         +  VIYGDTDS+M++ G+  + ++  +  +  + V+ K+ K 
Sbjct: 720  MTKTEVETHYTRSNGYENDAVVIYGDTDSVMVNFGVKSLERSMELGREAAELVSSKFVKP 779

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA   + F     Y+ ++ KG++ VRRD S L   + + CL
Sbjct: 780  IKLEFEKVYYPYLLINKKRYAG--LYFTRPEAYDKMDCKGIETVRRDNSPLVANLMNSCL 837

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             ++L ER+ E  V+       +V  D+   ++ + + VITK L K       A  Q HV+
Sbjct: 838  QKLLIERNPEGAVDYAK----QVIADLLCNRIDISQLVITKELAKTDY----AAKQAHVE 889

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A ++K+    T    GD VPY+IC     ++  +    Q+A  P  L   +    ID +
Sbjct: 890  LAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDAN 942

Query: 1255 YYASQQIHPVVSRLCASIEGTSPE 1278
            YY  QQ+   + R+   I G   E
Sbjct: 943  YYLEQQLSKPLLRIFEPILGEKAE 966


>gi|14250670|gb|AAH08800.1| Polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Homo
            sapiens]
 gi|123998555|gb|ABM86879.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
            [synthetic construct]
 gi|157929094|gb|ABW03832.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
            [synthetic construct]
          Length = 1107

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|58260420|ref|XP_567620.1| delta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229701|gb|AAW46103.1| delta DNA polymerase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1058

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 201/820 (24%), Positives = 356/820 (43%), Gaps = 139/820 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  K+ G +W+SI   ++       + S C+ EI+ +  KD+          ++ P+ 
Sbjct: 207  FMIDTKIVGMNWVSIPGGRYDLLEGGSKKSQCQIEISCNY-KDLISHPPENEWLDIAPLR 265

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            V + +++    K      +V+ ++  + +     +           KP + + FT+    
Sbjct: 266  VLSFDIECAGRKGIFPEANVDPVIQIAAMVTRHGE----------SKPFIRNVFTL---- 311

Query: 610  DGGIFPMGFNKEATDRNSKA---GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
                            N+ A   GS VL  +  ER LL      +  +D D+++G+NIS 
Sbjct: 312  ----------------NTCAHIVGSQVLEFKD-ERQLLLEWRKFVDTVDPDMIIGYNISN 354

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLL 724
            FDL  LL RA+  ++P   ++ +GRL+  R+E+ +       +G   S  +   + GRL 
Sbjct: 355  FDLPYLLDRAKALKIPD--FAFLGRLRNVRTEVKETHFSSKAYGQRDSKAVN--MEGRLQ 410

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETD 782
             D     +   +  SY+L  +    L + +++V  H ++   Q  T +S   L  Y   D
Sbjct: 411  LDILQVMQRDYKLRSYTLNAVCAQFLGEQKEDVH-HSIITELQNGTADSRRRLAVYCLKD 469

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A+L   LM  L       ++  ++G  +   L   +  +V   L        Y++P    
Sbjct: 470  AYLPQRLMDKLMCFVNYTEMARVTGVPFNYLLSRGQQIKVISQLYRNAADAGYVIP---- 525

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                   L +E ++                  Y G  V+EP KG
Sbjct: 526  ----------------------ALKSEGSD----------------EQYEGATVIEPSKG 547

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFT------TVERSPDGLVP-----HLP-------S 944
             YD  I  LDF SLYPSI+  +N+C+T      T+ER    LV      H P       S
Sbjct: 548  FYDVPIATLDFASLYPSIMMAHNLCYTTLLDKGTIERL--KLVEGEDYVHTPNNDFFATS 605

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             +  G+LP +L+NL+  R+  K  +K      K   LD +Q ALK++ANS+YG  G +  
Sbjct: 606  KRRKGLLPHILENLLAARKRAKQDLKVEKDPFKRAVLDGRQLALKVSANSVYGFTGATVG 665

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIA 1055
            +     ++  +T  GR+++  T   V+   ++        +++YGDTDS+M+  G  D+ 
Sbjct: 666  KLPCLAISSSVTAYGRQMIELTKKEVEAEYSMKNGYDHDAKIVYGDTDSVMVRFGCPDLP 725

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
             A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG
Sbjct: 726  TAMRLGAEAADLVSGKFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTKG 783

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD   L   V + CL ++L +R  +   + + +++     D+   ++ + + VIT
Sbjct: 784  IETVRRDNCRLVSTVIETCLFKMLIDRDVKGAEDYVKDTI----ADLLQNKIDMSQLVIT 839

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K L K       A  Q HV++  R+++    +  S GD V Y+I   +G       G A 
Sbjct: 840  KALAKADY----AAKQAHVELVERMRKRDAGSAPSLGDRVAYVIV--KGVK-----GAAA 888

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 889  YEKSEDPLYVLEHNVPIDTRYYLENQLSKPLMRIFEPILG 928


>gi|346327129|gb|EGX96725.1| DNA polymerase delta catalytic subunit [Cordyceps militaris CM01]
          Length = 1108

 Score =  187 bits (474), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 231/1001 (23%), Positives = 416/1001 (41%), Gaps = 184/1001 (18%)

Query: 334  SLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
            S+ F  +DA E        T+ LFG  + G   HS  + V + +  +Y +P    FQ  +
Sbjct: 105  SICFQSIDAEEGTLNGGRTTVKLFGVTEQG---HSVMLHVTDFRHYLY-VPAPTSFQPKD 160

Query: 394  I----MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSN-YIVSPVKRRYA 448
                 + LE+   + + +  +   +L++   G    + N  L + V++   ++ V+    
Sbjct: 161  CGAFKVFLEQQLAQHQPAIHSVVLRLREDMFGFNGNVQNPFLQITVTDPKFINSVRSTIE 220

Query: 449  FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL---------FLVK 499
             G A                            N+  + G+  S +           F+V 
Sbjct: 221  AGNA----------------------------NWKGMWGSSDSGIMTYDNIQYVLRFMVD 252

Query: 500  RKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAI 557
             K++G +W+    + +   P   R S C+ E  ++   D+         A++ P+ + + 
Sbjct: 253  CKIQGMAWVEAPANTYKLIPEHMRQSNCQIEAEINH-HDLVAHKPEGDWAKMAPLRILSF 311

Query: 558  NL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
            ++     K +F + +    I  A+VV  +  K           KP + + F +       
Sbjct: 312  DIECAGRKGIFPEPEHDPVIQIANVVTRYGEK-----------KPFVRNVFCL------- 353

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
                       D  S   +  +     E  +L+     L K+D D+++G+NI+ FD   L
Sbjct: 354  -----------DTTSSIVATQVLEYEKEAKMLSEWQQFLIKVDPDIIIGYNIANFDFPYL 402

Query: 673  LHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF 728
            ++RA+  +V     W+++  +        R   T F S   G      +   GRL  D  
Sbjct: 403  INRAKHLKVNGFEYWTRLPSIPS------RVKDTSFSSKQIGNRDTKATNTNGRLQLDLL 456

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSM 787
               +   +  SY+L  +    L + +++V    + ++F  T E+   L  Y   DA+L  
Sbjct: 457  QLIQRDHQLRSYTLNSVCAQFLGEQKEDVHHTMITELFNGTPENRRRLAIYCLKDAYLPQ 516

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVK 845
             LM  LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P       
Sbjct: 517  RLMDKLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIP------- 567

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                                      N   D S +          Y G  V+EP +G YD
Sbjct: 568  --------------------------NMKGDPSDDQ---------YEGATVIEPTRGYYD 592

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-------------VPHLPSSKTT---- 948
              I  LDF SLYPSI+Q +N+C+TT+    D +              P+  +  TT    
Sbjct: 593  VPIATLDFASLYPSIMQAHNLCYTTLITRKDRIAQFNLVKDEDYIVTPNGDTFVTTKQRK 652

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +   
Sbjct: 653  GLLAQILEELLSARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPC 712

Query: 1008 KPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKA 1059
              +A   T  GR+++  T D V+           + +VIYGDTDS+M+  G  ++A+A  
Sbjct: 713  LAIASSTTSFGRQMIERTKDEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKELAEAMK 772

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ V
Sbjct: 773  LGEEAAAFVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKTEKYDKMDTKGLETV 830

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  LL++ V +  L  IL  R  +   + + + +     D+   +V + K VITK LT
Sbjct: 831  RRDNCLLAQTVIEKVLRMILINRDVQGAQDYVKDMI----ADLLQNKVDMSKLVITKALT 886

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K  E Y     Q HV++A R+K+    +  S GD V Y++          + G     + 
Sbjct: 887  K--EDY--TAKQAHVELAARMKKRDAGSAPSLGDRVAYVMI-------RGAAGAKNFEKS 935

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
             D +   +    ID  YY   Q+   ++R+   I G +  R
Sbjct: 936  EDPIYVLENNVPIDTKYYLDNQLAKPLTRIFEPILGETKAR 976


>gi|324120694|dbj|BAJ78738.1| DNA polymerase delta catalytic subunit [Inocellia japonica]
          Length = 1097

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 176/673 (26%), Positives = 302/673 (44%), Gaps = 95/673 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
            + E  +L +    + ++D DV  G+NI+ FDL  LL+RA+   V +  +  +GR+K  RS
Sbjct: 366  TRENEMLEKWADFVREVDPDVFTGYNINNFDLPYLLNRAKHLTVRNFHY--LGRIKDIRS 423

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             + +        G   +  I +   GR+  D  L      +  SY+L  ++   L + ++
Sbjct: 424  VVKEQILQSKQLGRRENKSINT--EGRVPFDLLLVLVRDYKLRSYTLNAVSFHFLQEQKE 481

Query: 756  EVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H V+   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G      
Sbjct: 482  DVH-HSVISDLQQGNPQTRRRLAVYCLKDAYLPLRLLDKLMCMINYMEMARVTGVPLSSL 540

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   LL   R K +++P                                   
Sbjct: 541  LTRGQQIKVVSQLLRKAREKDFVIPA---------------------------------- 566

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                    +  G +   Y G  V+EPK+G YD  I  LDF+SLYPSI+  +N+C+T++  
Sbjct: 567  --------YSGGTQEDQYEGATVIEPKRGYYDDPIATLDFSSLYPSIMMAHNLCYTSLLQ 618

Query: 932  --------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
                           R+P G    +  S   G+LPE+L+NL+  R+  K  +K  +  LK
Sbjct: 619  PGVKEKLGLTPDQYSRTPAGNF-FVKQSVRKGLLPEILENLLAARKKAKADLKKETDPLK 677

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--- 1033
             + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+      
Sbjct: 678  CKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRYCVA 737

Query: 1034 -----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                 +  VIYGDTDS+MI  G+  +  A A+  +  + V+ K+ K ++++ + +Y   L
Sbjct: 738  NGYKHDAVVIYGDTDSVMIKFGVKTLEDAMALGKEAAEYVSSKFIKPIKLEFEKVYYPYL 797

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L +R  +  +
Sbjct: 798  LISKKRYAGLYFTRTDT--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLIDRDPDGAL 855

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E       +V  D+   ++ + + V+TK LTK       A  Q HV++A ++K+    T 
Sbjct: 856  EYAK----QVISDLLCNRIDISQLVVTKELTKSDY----AAKQAHVELANKMKKRDPGTA 907

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD VPY++         ++ G     +  D +   +    ID  YY   Q+   + R
Sbjct: 908  PKLGDRVPYVLV-------AAAKGTPAYMKAEDPIYVLENSIPIDSSYYLENQLSKPLIR 960

Query: 1268 LCASIEGTSPERL 1280
            +   I G   E L
Sbjct: 961  IFEPILGDKAESL 973


>gi|109125666|ref|XP_001116065.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 2 [Macaca
            mulatta]
          Length = 1327

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 181/673 (26%), Positives = 307/673 (45%), Gaps = 109/673 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------L 692
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       +
Sbjct: 374  EEDLLQAWSTFIRVMDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLRSNI 431

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQ 749
            + S     + GR          ++S + GR+  D     + LLRE    SY+L  ++   
Sbjct: 432  RDSSFQSKQTGRR------DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHF 481

Query: 750  LNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G
Sbjct: 482  LGEQKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTG 540

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L  +R Q+V+ +                     +++ +Q  + G+    V    
Sbjct: 541  VPLSYLL--SRGQQVKVV---------------------SQLLRQAMHEGLLMPVVRSEG 577

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED                    Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C
Sbjct: 578  GED--------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLC 617

Query: 928  FTTVER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            +TT+ R                +P G    + +S   G+LP++L+NL+  R+  K  + K
Sbjct: 618  YTTLLRPGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAK 676

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+
Sbjct: 677  ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVE 736

Query: 1031 NNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDG 1081
            +   +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + 
Sbjct: 737  SKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEK 796

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R
Sbjct: 797  VYFPYLLISKKRYAGLLFSSRPDT-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR 855

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E  V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++
Sbjct: 856  DPEGAVAHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRK 909

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                +  S GD VPY+I         ++ G+A   +  D L   +    ID  YY  QQ+
Sbjct: 910  RDPGSAPSLGDRVPYVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962

Query: 1262 HPVVSRLCASIEG 1274
               + R+   I G
Sbjct: 963  AKPLLRIFEPILG 975


>gi|134117391|ref|XP_772922.1| hypothetical protein CNBK2930 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255540|gb|EAL18275.1| hypothetical protein CNBK2930 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1059

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 201/820 (24%), Positives = 356/820 (43%), Gaps = 139/820 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  K+ G +W+SI   ++       + S C+ EI+ +  KD+          ++ P+ 
Sbjct: 208  FMIDTKIVGMNWVSIPGGRYDLLEGGSKKSQCQIEISCNY-KDLISHPPENEWLDIAPLR 266

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            V + +++    K      +V+ ++  + +     +           KP + + FT+    
Sbjct: 267  VLSFDIECAGRKGIFPEANVDPVIQIAAMVTRHGE----------SKPFIRNVFTL---- 312

Query: 610  DGGIFPMGFNKEATDRNSKA---GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
                            N+ A   GS VL  +  ER LL      +  +D D+++G+NIS 
Sbjct: 313  ----------------NTCAHIVGSQVLEFKD-ERQLLLEWRKFVDTVDPDMIIGYNISN 355

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLL 724
            FDL  LL RA+  ++P   ++ +GRL+  R+E+ +       +G   S  +   + GRL 
Sbjct: 356  FDLPYLLDRAKALKIPD--FAFLGRLRNVRTEVKETHFSSKAYGQRDSKAVN--MEGRLQ 411

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETD 782
             D     +   +  SY+L  +    L + +++V  H ++   Q  T +S   L  Y   D
Sbjct: 412  LDILQVMQRDYKLRSYTLNAVCAQFLGEQKEDVH-HSIITELQNGTADSRRRLAVYCLKD 470

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A+L   LM  L       ++  ++G  +   L   +  +V   L        Y++P    
Sbjct: 471  AYLPQRLMDKLMCFVNYTEMARVTGVPFNYLLSRGQQIKVISQLYRNAADAGYVIP---- 526

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                   L +E ++                  Y G  V+EP KG
Sbjct: 527  ----------------------ALKSEGSD----------------EQYEGATVIEPSKG 548

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFT------TVERSPDGLVP-----HLP-------S 944
             YD  I  LDF SLYPSI+  +N+C+T      T+ER    LV      H P       S
Sbjct: 549  FYDVPIATLDFASLYPSIMMAHNLCYTTLLDKGTIERL--KLVEGEDYVHTPNNDFFATS 606

Query: 945  SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             +  G+LP +L+NL+  R+  K  +K      K   LD +Q ALK++ANS+YG  G +  
Sbjct: 607  KRRKGLLPHILENLLAARKRAKQDLKVEKDPFKRAVLDGRQLALKVSANSVYGFTGATVG 666

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIA 1055
            +     ++  +T  GR+++  T   V+   ++        +++YGDTDS+M+  G  D+ 
Sbjct: 667  KLPCLAISSSVTAYGRQMIELTKKEVEAEYSMKNGYDHDAKIVYGDTDSVMVRFGCPDLP 726

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
             A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG
Sbjct: 727  TAMRLGAEAADLVSGKFIKPIKLEFEKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTKG 784

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD   L   V + CL ++L +R  +   + + +++     D+   ++ + + VIT
Sbjct: 785  IETVRRDNCRLVSTVIETCLFKMLIDRDVKGAEDYVKDTI----ADLLQNKIDMSQLVIT 840

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K L K       A  Q HV++  R+++    +  S GD V Y+I   +G       G A 
Sbjct: 841  KALAKADY----AAKQAHVELVERMRKRDAGSAPSLGDRVAYVIV--KGVK-----GAAA 889

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 890  YEKSEDPLYVLEHNVPIDTRYYLENQLSKPLMRIFEPILG 929


>gi|324500650|gb|ADY40299.1| DNA polymerase delta catalytic subunit [Ascaris suum]
          Length = 1091

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 202/822 (24%), Positives = 361/822 (43%), Gaps = 129/822 (15%)

Query: 496  FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSS--SSKHVAEVPP 551
            F+V   + G  W+ +   K+   P  Q VS C+ E T+    D+ V +  S+   + + P
Sbjct: 234  FMVDLGLVGCGWVVLPSRKYDVVPEGQMVSRCQLECTIKF-TDVVVHAPESAPEWSAIAP 292

Query: 552  VTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            + + + +++   N+R    E  + +V+                           + K++G
Sbjct: 293  LRILSFDIECT-NRRGIFPEAHTDAVI-----------------------QIANMVKVEG 328

Query: 612  GIFPMGFNKEAT-DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G  P   N     D     GS+++ C + E  LL +    +  LD D++ G+NI  FD+ 
Sbjct: 329  GTDPFIRNCFVIGDTTPVIGSDIIVCRN-EHELLEKWAEFVRILDPDIVTGYNIQNFDIP 387

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRS-----EMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
             ++ RA+  ++ S + + +GR+  S     +MP   K       G      + + GR++ 
Sbjct: 388  YIIDRAKALKIESKV-AMLGRVPSSLSKVRDMPVSSKQM-----GNRTNKYTSMEGRVIF 441

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDA 783
            D         +  SYSL  ++   L + +++V  + ++   Q    L    L  Y   DA
Sbjct: 442  DVMQVVLRDYKLRSYSLNSVSYHFLGEQKEDVD-YSLIADLQNGTPLTRRRLAVYCMKDA 500

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
            +L + L+  L  +    ++  ++G      L   +  +V   LL   ++  + VP     
Sbjct: 501  YLPLRLLQKLMSVINYIEMARVTGVPLDYLLSRGQQVKVMSQLLRKAKSHHFFVPVM--- 557

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                                      DA   +DT             + G  V+EP +G 
Sbjct: 558  --------------------------DAAQTDDT-------------FEGATVIEPIRGF 578

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPDGLVP-----------HLPSSKTTG 949
            Y   I  LDF SLYPS++  +NIC+TT+   + S  GL              + ++   G
Sbjct: 579  YAVPIATLDFASLYPSVMIAHNICYTTLIQGQPSAQGLKEDDFEVSPSNNRFVKANVRRG 638

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LPE+L++L+  R+  K  +K      +   L+ +Q ALK++ANS+YG  G +  +    
Sbjct: 639  LLPEILEDLLSARKRAKADLKNEKDPFRCMVLNGRQLALKISANSVYGFTGATVGKLPCL 698

Query: 1009 PLAELITQQGREILRSTVDLVQ-----NNLN------LEVIYGDTDSIMIHSGIDDIAKA 1057
             +++ +T  GR+++  T + V+       LN       +VIYGDTDS+M+  G+ DIA A
Sbjct: 699  QISQSVTAFGRQMIDFTKNTVEEIYKKGYLNGKCPCDAKVIYGDTDSVMVKFGVKDIALA 758

Query: 1058 KAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +      EV+KK++  ++++ + +Y   LL+ KK+YA   + F     ++ ++ KGL+
Sbjct: 759  MELGQHAAVEVSKKFRSPIKLEFEKVYCPFLLINKKRYAG--LYFTRPEKHDKMDCKGLE 816

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD   L  +V   CL ++L E   +  +E       KV  D+   ++ + + +I+K 
Sbjct: 817  TVRRDNCPLVSKVLSACLEKMLLEGDAKGALEHAK----KVISDLLCNRIDISELIISKE 872

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LT+   AY     Q HV +A R++     +    GD VPY+I      + G  V   ++A
Sbjct: 873  LTRQSTAY--QAKQAHVVLADRMRLRDAGSAPRLGDRVPYVI-----VAKGQKVPAYEKA 925

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
              P  + + +    ID  YY   Q+   ++R+   I G   E
Sbjct: 926  EDPIYVLQNN--IPIDTSYYLENQLAKPLARIFEPILGDKAE 965


>gi|392565561|gb|EIW58738.1| delta DNA polymerase [Trametes versicolor FP-101664 SS1]
          Length = 1066

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 178/675 (26%), Positives = 300/675 (44%), Gaps = 95/675 (14%)

Query: 630  GSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            GS V+  ++    LL  R  +E  ++D DV++G+NISGFDL  L+ RA+  +  +  +  
Sbjct: 325  GSQVISFQNEAELLLKWREFVE--EVDPDVVIGYNISGFDLPYLIDRAKALK--AQKFPY 380

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+   +        +    G      + + GRL  D     +   +  SY+L  +   
Sbjct: 381  LGRMTNKQTVTKDTHFSSKAFGQRDSKETALDGRLQIDILQYMQREYKLRSYTLNSVCAQ 440

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H V+   Q  T ES   L  Y   DA+L   LM  L       ++  ++
Sbjct: 441  FLGEQKEDVH-HSVITDLQNGTPESRRRLAVYCLKDAYLPQRLMDKLMCFINYTEMARVT 499

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G  +   L   ++ +V   L        YIVP                           L
Sbjct: 500  GVPFNFLLSRGQSIKVLSQLFRKANDDGYIVP--------------------------AL 533

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
              E ++                  Y G  V+EPKKG YD  I  LDF+SLYPSI+  +N+
Sbjct: 534  RGEGSD----------------EQYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNL 577

Query: 927  CFT------TVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            C+T      TVER           +P+  +  + S++  G+LP +L+ L+  R+  K  +
Sbjct: 578  CYTTLLDKSTVERLKLVKDVDYIQTPNNDL-FVKSTRRKGLLPTILEELIGARKRAKADL 636

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +   K   LD +Q ALK++ANS+YG  G +  +    P++   T  GR+++  T   
Sbjct: 637  KKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSTTSYGRQMIEKTKQE 696

Query: 1029 VQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+        ++ +  VIYGDTDS+M+  G  D+     +  +    V  K+ K ++++ 
Sbjct: 697  VEAEYCIANGHSHDATVIYGDTDSVMVRFGPTDLPTVMRMGSEAADFVTAKFIKPIKLEF 756

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V + CL ++L 
Sbjct: 757  EKVYFPYLLISKKRYAG--LYWTRPEKYDKMDTKGIETVRRDNCRLVSTVIETCLHKMLI 814

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R      + +  ++     D+   +V + + VITK L+K       A  Q HV++A R+
Sbjct: 815  DRDVGGAEDYVKQTI----SDLLQNKVDMSQLVITKALSKTDY----ASKQAHVELAERM 866

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+    +  + GD V Y+I          + G A   +  D +   +    ID  YY   
Sbjct: 867  KKRDAGSAPALGDRVAYVII-------KGAKGAAAYEKSEDPIFVLENSIPIDTKYYLEN 919

Query: 1260 QIHPVVSRLCASIEG 1274
            Q+   + R+   I G
Sbjct: 920  QLSNPLMRIFEPILG 934


>gi|402906428|ref|XP_003916004.1| PREDICTED: DNA polymerase delta catalytic subunit [Papio anubis]
          Length = 1107

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V +  +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKVET--FPFLGRVAGLRSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V     ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVRSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R        
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 631

Query: 934  --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                    +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDT-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|367037701|ref|XP_003649231.1| hypothetical protein THITE_2107682 [Thielavia terrestris NRRL 8126]
 gi|346996492|gb|AEO62895.1| hypothetical protein THITE_2107682 [Thielavia terrestris NRRL 8126]
          Length = 1103

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 182/659 (27%), Positives = 300/659 (45%), Gaps = 101/659 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L K+D D++ G+NI+ FD   LL RA   +V     WS      R+ +  + K  T F S
Sbjct: 380  LEKVDPDIITGYNIANFDFPYLLDRAAHLKVRGFEYWS------RTHVKSVAKD-TSFSS 432

Query: 710  ---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
               G      +   GRL  D     +   +  SY+L  +    L + +++V    + ++F
Sbjct: 433  KQMGNRDTKATNTNGRLQLDLLQLIQRDHQLRSYTLNSVCSHFLGEQKEDVHHSMITELF 492

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            + T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V++L
Sbjct: 493  EGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFL 550

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      +K ++P                                 N  +++S     
Sbjct: 551  SQLFRKALEQKLVIP---------------------------------NLRSESSEEQ-- 575

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GL- 938
                   Y G  V+EP +G YD  I  LDF SLYPSIIQ +N+C+TT+ +  D    GL 
Sbjct: 576  -------YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLIKKKDIEKWGLK 628

Query: 939  -------VPH----LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQA 986
                    P+    + + +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q A
Sbjct: 629  KDEDYIVTPNGDMFVTTKQRKGLLSQILEELLAARKQAKKELAAETDPFKKAVLNGRQLA 688

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVI 1038
            LK++ANS+YG  G +N +     +A   T  GR+++  T   V+           + +VI
Sbjct: 689  LKISANSVYGLTGATNGKLPCLEIASSTTSFGRQMIEKTKQEVEKRYCIANGYSHDAQVI 748

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAV 1097
            YGDTDS+M+  G  D+A+A  +     Q V+ K+ K ++++ + +Y   LL+ KK+YA +
Sbjct: 749  YGDTDSVMVKFGTKDLAEAMKLGEDASQFVSSKFIKPIKLEFEKVYFPYLLINKKRYAGL 808

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
                 D   Y+ ++ KG++ VRRD  LL + V +  L  IL ++      E + +++   
Sbjct: 809  YWTKPD--KYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAQEYVKDTIA-- 864

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
              D+   ++ + K VITK LTK  E Y  A  Q HV++A R+K+    +  + GD V Y+
Sbjct: 865  --DLLQNKIDMSKLVITKALTK--EDY--AAKQAHVELAQRMKKRDAGSAPALGDRVAYV 918

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +          + G     R  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 919  MV-------KGAAGSKNFERSEDPIYVLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 970


>gi|149757884|ref|XP_001493912.1| PREDICTED: DNA polymerase delta catalytic subunit [Equus caballus]
          Length = 1107

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 182/673 (27%), Positives = 307/673 (45%), Gaps = 109/673 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------L 692
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V  S +  +GR       +
Sbjct: 374  EEELLQAWSAFIRTMDPDVITGYNIQNFDLPYLISRAQTLKV--SSFPFLGRVSGLRSNI 431

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQ 749
            + S     + GR          ++S + GR+  D     + LLRE    SY+L  ++   
Sbjct: 432  RDSSFQSKQTGRR------DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHF 481

Query: 750  LNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G
Sbjct: 482  LGEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNAVEMARVTG 540

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L  +R Q+V+ +                     +++ +Q    G+    V+   
Sbjct: 541  VPLSYLL--SRGQQVKVV---------------------SQLLRQAMREGLVMPVVKTEG 577

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED                    Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C
Sbjct: 578  GED--------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLC 617

Query: 928  FTTVER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            +TT+ R                +P G    + +S   G+LP++L+NL+  R+  K  + K
Sbjct: 618  YTTLLRPGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAK 676

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+
Sbjct: 677  ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIERTKQLVE 736

Query: 1031 NNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDG 1081
            +    E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + 
Sbjct: 737  SKYTTENGYSASAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEK 796

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R
Sbjct: 797  VYFPYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR 855

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
                 V        +V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++
Sbjct: 856  DPNGAVAHAQ----EVISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRK 909

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                +  S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+
Sbjct: 910  RDPGSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962

Query: 1262 HPVVSRLCASIEG 1274
               + R+   I G
Sbjct: 963  AKPLLRIFEPILG 975


>gi|324120730|dbj|BAJ78756.1| DNA polymerase delta catalytic subunit [Reticulitermes speratus]
          Length = 1033

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 179/678 (26%), Positives = 305/678 (44%), Gaps = 105/678 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
            + ER LL +    + ++D DV+ G+NI+ FD   L++RA   +V +  ++ +GR+K  RS
Sbjct: 303  TEERELLEKWAAFVREVDPDVITGYNINNFDFPYLINRANHLKVKN--FTYLGRVKNIRS 360

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             +          G   +   M+C  GR+  D  L      +  SY+L  ++   L + ++
Sbjct: 361  VIKDQVLQSKQMGRRENKS-MNC-EGRVPFDLLLILVRDYKLRSYTLNAVSFHFLGEQKE 418

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L  +    +++ ++G      
Sbjct: 419  DVH-HSIITDLQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCVINYMEMSRVTGVSLSSL 477

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   LL   R K Y++P     V+E +                         
Sbjct: 478  LTRGQQIKVVSQLLRKAREKGYLMPAYGGGVQEEQ------------------------- 512

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EPKKG Y   +  LDF+SLYPSI+  +N+C+TT+ +
Sbjct: 513  -----------------YEGATVIEPKKGYYSDPVATLDFSSLYPSIMMAHNLCYTTLLQ 555

Query: 934  ---------SPDGLVPHLPS------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
                     SPD  +    S      S   G+LPE+L+NL+  R+  K  +K      + 
Sbjct: 556  PGAPSRLGLSPDQYIKTPASNFFVNKSVRKGLLPEILENLLAARKKAKADLKEEKDPFRQ 615

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL-- 1035
            + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ + N+  
Sbjct: 616  KVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHYNVAN 675

Query: 1036 ------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                  EVIYGDTDS+M+  G+  + +A  +       V+ ++   + ++ + +Y   LL
Sbjct: 676  GYKNDAEVIYGDTDSVMVKFGVKTLEEAMELGRDAANYVSTRFPPPIRLEFEKVYFPYLL 735

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL ++L +R  +  VE
Sbjct: 736  ISKKRYAGLYFTRPDR--YDKMDCKGIETVRRDNSPLVANMMNTCLQKLLIDRDPDGAVE 793

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
                   +V  D+   ++ + + VITK L K       A  Q HV++A ++K+    T  
Sbjct: 794  YAK----QVISDLLCNRIDISQLVITKELAKSDY----AAKQAHVELAAKMKKRDPGTAP 845

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYYASQQIH 1262
              GD VPY+I             IA     P  +K  D  ++      ID +YY   Q+ 
Sbjct: 846  KLGDRVPYVI-------------IAAAKNTPAYMKAEDPIYVLENSVPIDSNYYLENQLS 892

Query: 1263 PVVSRLCASIEGTSPERL 1280
              + R+   I G   E +
Sbjct: 893  KPLLRIFTPILGEKAESI 910


>gi|17225461|gb|AAL37413.1|AF326983_1 DNA polymerase alpha [Leishmania sp. MHOM/MQ/92/MAR1]
          Length = 305

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 180/340 (52%), Gaps = 70/340 (20%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLCDTFLCSRDLLREVS 739
           S WS IGRL    +P+ +        G +P    G  +CI GRL+ D++L SR+  + V+
Sbjct: 6   SSWSTIGRLDLKRLPRFQ--------GTAPNTNQGKETCI-GRLVVDSYLLSREHYKTVN 56

Query: 740 YSLTQLAKTQ----LNKDRKEVGPHDVLKMFQTL---ESLMELIEYGETDAWLSMELMFH 792
           Y L  LA+      + K   +  P   +    TL     + +++      A LS  ++ H
Sbjct: 57  YRLLSLAEQMQLQGITKGSNKFEPGISVLTPTTLSISREIYDVLLQVCNCAVLSTAVISH 116

Query: 793 LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
           L V+ LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  +V+E K  + 
Sbjct: 117 LDVIRLTKRLTTIAGNLWSRTLLGARSERIEYLLLHTFHDLKFITPDR--HVQEFKRGRD 174

Query: 853 RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
                                      +D   GKR   Y GG+VL+PK GLY  YILLLD
Sbjct: 175 ---------------------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLD 207

Query: 913 FNSLYPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPEL 954
           FNSLYPS+IQE+NICFTTV+R          P+ L+    S    G         VLP++
Sbjct: 208 FNSLYPSLIQEFNICFTTVDRENRSEVDVPPPENLI--CASCTAAGLSSPCLHKCVLPKV 265

Query: 955 LKNLVQRRRMVKTWMKTASGLK-IQQLDIQQQALKLTANS 993
           +K+LV  RR VK  MK    +  +  L+I+Q+ALKLTANS
Sbjct: 266 IKSLVDSRREVKRLMKAEKDVNSLALLEIRQKALKLTANS 305


>gi|335290039|ref|XP_003127412.2| PREDICTED: DNA polymerase delta catalytic subunit [Sus scrofa]
          Length = 1107

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 178/656 (27%), Positives = 303/656 (46%), Gaps = 103/656 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM--PKLRKGRTIFGS 709
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR+   RS +     +  +T    
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVSGLRSNIRDSSFQSKQT---- 441

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G     +  + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++   
Sbjct: 442  GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 497

Query: 767  QTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R Q+V+ 
Sbjct: 498  QNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL--SRGQQVKV 555

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            +                     +++ +Q    G+    V+    ED              
Sbjct: 556  V---------------------SQLLRQAMREGLLMPVVKTEGGED-------------- 580

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----------- 933
                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R           
Sbjct: 581  ------YTGATVIEPLKGYYDVPITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTA 634

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
                 +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q AL
Sbjct: 635  DQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 693

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIY 1039
            K++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        V+Y
Sbjct: 694  KVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGTSAKVVY 753

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA + 
Sbjct: 754  GDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPAPIRLEFEKVYFPYLLISKKRYAGLL 813

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
               +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V    +    V 
Sbjct: 814  FSSRPDT-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAVAHAQD----VI 868

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+I
Sbjct: 869  SDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVI 926

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                     ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 927  I-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|312376112|gb|EFR23299.1| hypothetical protein AND_13138 [Anopheles darlingi]
          Length = 1092

 Score =  186 bits (473), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 206/830 (24%), Positives = 373/830 (44%), Gaps = 145/830 (17%)

Query: 496  FLVKRKVKGPSWLSIS-------KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK-HVA 547
            F+V R V G SW+ +        K    PAP+     + +I VD   D  ++   +   A
Sbjct: 238  FMVDRGVVGCSWIELPPGTWYYRKKGKMPAPE----TRCQIEVDVAYDAFIAHEPEGEWA 293

Query: 548  EVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH 602
            +V P+ + + ++     K +F + Q    I  A++V           +    ++P + + 
Sbjct: 294  KVAPLRILSFDIECAGRKGIFPEPQHDPVIQIANMV-----------IRQGEQEPFLRNV 342

Query: 603  FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
            FT+         P+             G+ VL   ++E+ LL++    + +LD D+L G+
Sbjct: 343  FTL-----NTCAPI------------VGAQVLS-YNTEQELLDQWANFVRELDPDILTGY 384

Query: 663  NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIA 720
            NI+ FD+  LL+RA   +V  S +  +GR+  + +  + K   I     G          
Sbjct: 385  NINNFDIPYLLNRASHLKV--SRFEYLGRI--TNIRSVIKDTVIQSKQMGRRENKYVNFE 440

Query: 721  GRLLCDT-FLCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELI 776
            GR+  D  F+  RD  LR  SY+L  ++   L + +++V  H ++   Q  + ++   L 
Sbjct: 441  GRVPFDLLFVLLRDYKLR--SYTLNAVSYHFLQEQKEDVH-HSIITDLQNESEQTRRRLA 497

Query: 777  EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
             Y   DA+L + L+  L  +    ++  ++G      L   +  +V   LL   +   Y+
Sbjct: 498  MYCLKDAYLPLRLLNKLMCIVNYMEMARVTGVPLSCLLTRGQQIKVMSQLLRKSKVAGYL 557

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
            +P                + G E++                             Y G  V
Sbjct: 558  IPSY-------------QSSGSEEQ-----------------------------YEGATV 575

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------SPDGLVPHLPSSKT 947
            +EPK+G Y K I  LDF SLYPSI+  +N+C+TT+ +         +PD L  H P++  
Sbjct: 576  IEPKRGYYAKPISTLDFASLYPSIMMAHNLCYTTLVQPNMKDKLNLTPDQLT-HTPANNV 634

Query: 948  -------TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLG 999
                    G+LPE+L++L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G
Sbjct: 635  FVKASVRKGLLPEILESLLAARKRAKADLKVETDPFKRSVLDGRQLALKISANSVYGFTG 694

Query: 1000 FSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGI 1051
                +     ++  +T  GR ++  T   V+    +E        VIYGDTDS+M++ G+
Sbjct: 695  AQVGKLPCLEISGSVTAYGRTMIEYTKQEVEQRYTVENGYENDAVVIYGDTDSVMVNFGV 754

Query: 1052 DDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVI 1110
            + + ++  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ +
Sbjct: 755  ETLERSMELGKEAADYVSAKFVKPIKLEFEKVYYPYLLINKKRYAGLYFTRPDR--YDKM 812

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            + KG++ VRRD S L   + + CL ++L ER+ +  +E    ++     D+   ++ + +
Sbjct: 813  DCKGIETVRRDNSPLVANLMNNCLQKLLIERNPDGAIEYAKQTI----SDLLCNRIDISQ 868

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
             VITK L+K       A  Q HV++A ++++         GD VPY++      ++  + 
Sbjct: 869  LVITKELSKSDY----AAKQAHVELANKMRKRDPGNAPKLGDRVPYVL-----IAAAKNT 919

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
               Q+A  P  +   +    ID +YY   Q+   + R+   I G   E +
Sbjct: 920  PAYQKAEDP--IYVLENCIPIDANYYLENQLSKPLLRIFEPILGDKAESI 967


>gi|157875046|ref|XP_001685930.1| putative DNA polymerase delta catalytic subunit [Leishmania major
            strain Friedlin]
 gi|68129003|emb|CAJ06437.1| putative DNA polymerase delta catalytic subunit [Leishmania major
            strain Friedlin]
          Length = 1032

 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 202/806 (25%), Positives = 354/806 (43%), Gaps = 122/806 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            FLV   + G +WL+++      +P + S C+ E+ V S +D++          + P  + 
Sbjct: 182  FLVDNDIGGSNWLTLTYGKFFASPVKTSTCQIEV-VCSHEDVQNHEPLGDYLSIAPFRIL 240

Query: 556  AINL-----KTVFNKRQD--VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +I++     K +F + +   V +I +  V   H+++            P   + FT+   
Sbjct: 241  SIDIECQGRKGLFPEPEHDPVIQIANHCVEYGHESE------------PLTKTIFTL--- 285

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+            AG+ VL  E+    LL      +  LD D+L G+NI  FD
Sbjct: 286  --KSCAPI------------AGAQVLSYETEAEMLLAWATF-MKALDPDILTGYNICNFD 330

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
               LL RA   +  S  +   GR          K       G        + GR++ D  
Sbjct: 331  FPYLLSRATALKA-SDAFHYWGRQVHERTVARDKKFQSKQMGNREYTELTLEGRIIMDAM 389

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLS 786
            +  +   +  SYSL  +++  L + +++V  H ++   Q    E+   L  Y   DA+L 
Sbjct: 390  VVIQRDYKLRSYSLNSVSQNFLGEQKEDVH-HSIISDLQHGDEETRRRLAVYCLKDAFLP 448

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            ++L+  L  +    ++  ++G   G  L+  +  +V  +LL   + KK +VP        
Sbjct: 449  VKLLDRLMCIVNNVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVP-------- 500

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                            VE     D                RG  Y G  V++P KG Y+ 
Sbjct: 501  ---------------TVEYTGGSD----------------RG--YEGATVIDPIKGFYNC 527

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPH--LPSSKTT----------GVLPE 953
             +  LDF SLYPSII  +N+C++T+ R  D  L P   L  S T+          G+LPE
Sbjct: 528  PVATLDFASLYPSIIIAHNLCYSTLVRPADARLYPEDALDRSPTSDVFVKKEVFPGILPE 587

Query: 954  LLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            +L++L+  R+  +  MK    + L+ + L+ +Q ALK++ANS+YG  G    +     ++
Sbjct: 588  VLQDLLAARKHARAMMKDVPMNSLEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEIS 647

Query: 1012 ELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDDIA-------KAKAIAGK 1063
              +T  GR+++  T +LV++      V+YGDTDS+M+    D+ A       +A     +
Sbjct: 648  ASVTAYGRQMIDRTKNLVEDLYPGARVLYGDTDSVMVKCVTDEKASDKERLQEAMDFGIE 707

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              ++V+  + K ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD 
Sbjct: 708  AAEKVSSNFLKPIKLEFEKVYFPYLLMNKKRYAGLLWTNTDR--FDKLDAKGIETVRRDN 765

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   +    L++IL  RS E  VE +  ++     D+   ++ +   VITK  +K  +
Sbjct: 766  CPLVARMVSGVLNRILIHRSVESAVEFVKGTI----SDLLLNRLDISNLVITKAFSKAED 821

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y  A  Q H+ +  R++Q   ++  + GD V Y+I         ++ G     R  D +
Sbjct: 822  EYAGA--QAHIALVERMRQRDPASAPTIGDRVAYVII-------KAAKGAKAYERSEDPI 872

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRL 1268
               D    ID  YY   Q+ P + R+
Sbjct: 873  YVLDNNIPIDTQYYLEHQLAPPILRV 898


>gi|254567878|ref|XP_002491049.1| Catalytic subunit of DNA polymerase delta [Komagataella pastoris
            GS115]
 gi|238030846|emb|CAY68769.1| Catalytic subunit of DNA polymerase delta [Komagataella pastoris
            GS115]
 gi|328352425|emb|CCA38824.1| DNA polymerase delta subunit 1 [Komagataella pastoris CBS 7435]
          Length = 1093

 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 207/823 (25%), Positives = 360/823 (43%), Gaps = 131/823 (15%)

Query: 497  LVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            +V  KV G  W+ +  SK++  P  Q+VS C+ E++VD  +D+         +++ P+ +
Sbjct: 238  MVDTKVSGMCWIKLQASKYTLVPPSQQVSTCQLELSVDY-RDLVSLPIEGEFSKIAPLRI 296

Query: 555  TAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
             + ++     K +F + +    I  A+VV   +    TP + +          FTV    
Sbjct: 297  LSFDIECAGRKGIFPEPEHDPVIQIANVVS--RTGESTPFVRNV---------FTV---- 341

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                 P+             GS +   E  E  LL +    + K+D DV++G+NI+ FD 
Sbjct: 342  -NSCAPI------------VGSQIFSFEKEEE-LLRKWRDFIIKVDPDVIIGYNIANFDF 387

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
              L++RA   +V    +    R+K S+        +    G     +  I GR+  D   
Sbjct: 388  PYLINRAATLKVQD--FPFFSRVKTSKQEIKDSTFSSKAYGTRENKVVNIDGRMQLDLLQ 445

Query: 730  CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSM 787
              +   +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L +
Sbjct: 446  FIQREYKLRSYTLNSVSSHFLGEQKEDVQ-HSIITDLQNGDAETRRRLAVYCLKDAYLPL 504

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             L   L  L    ++  ++G  +   L  +R Q+++            ++   F      
Sbjct: 505  RLAEKLMCLVNYTEMARVTGVPFSFLL--SRGQQIK------------VISQLF------ 544

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                         R   EL     N  +D+ + +         Y G  V++P +G YD  
Sbjct: 545  -------------RKCLELDIVIPNMKSDSVNEE---------YEGATVIDPVRGYYDVP 582

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPD----GLVP------------HLPSSKTTGVL 951
            +  LDF SLYPSI+  +N+C+TT+   P     GLV              +      G+L
Sbjct: 583  VATLDFASLYPSIMMAHNLCYTTLLNKPTIDRLGLVKDKDYILTPNGDFFVKEDLRKGIL 642

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            P +L+ L+  R+  K  +KT +   K Q L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 643  PTILQELLAARKKAKYDLKTETDPFKKQVLNGRQLALKISANSVYGFTGATIGKLPCLAI 702

Query: 1011 AELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +  +T  GRE++ +T   VQ    +        +VIYGDTDS+M+  G +D+ K   +  
Sbjct: 703  SSSVTAFGREMIEATKQAVQERYTIKNGYDHDAQVIYGDTDSVMVKFGENDLRKCMKLGE 762

Query: 1063 KVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+  +K  ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD
Sbjct: 763  EAAAFVSTIFKNPIKLEFEKVYFPYLLINKKRYAGLYWTNPDK--YDKMDTKGIETVRRD 820

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
               L + V    L  +L  R     VE   N + +   D+   +V L + VITK L++  
Sbjct: 821  NCRLVQNVITKVLEYMLELRD----VEGAENFVKQTIADLLQDRVDLSQLVITKALSR-- 874

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            + Y  A  Q HV++A R+++    +  + GD V Y+I     T +          +  D 
Sbjct: 875  QDY--AGKQAHVELAERMRKRDAGSAPTLGDRVAYVIIKTSSTKN--------YEKSEDP 924

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
            L   +    ID +YY   Q+   ++R+   I G   ER A  L
Sbjct: 925  LYVLEHSLPIDTNYYLENQLAKPLTRIFEPILG---ERRAKAL 964


>gi|171693865|ref|XP_001911857.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946881|emb|CAP73685.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1108

 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 182/660 (27%), Positives = 302/660 (45%), Gaps = 103/660 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L K+D D+++G+NI+ FD   LL RA+  +V +   WS      R+ +  + K  T F S
Sbjct: 385  LEKVDPDIIIGYNIANFDFPYLLDRAKHLKVHNFEYWS------RTHVKSVAK-ETNFSS 437

Query: 710  ---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
               G      +   GRL  D     +   +  SY+L  +    L + +++V    + ++F
Sbjct: 438  KQMGNRDTKATNTNGRLQLDLLQLVQRDHQLRSYTLNSVCAHFLGEQKEDVHHSMITELF 497

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            + T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V++L
Sbjct: 498  EGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFL 555

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      +K ++P+             RS    E                        
Sbjct: 556  SQLFRKALEQKLVIPN------------MRSESSEEQ----------------------- 580

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +G YD  I  LDF SLYPSIIQ +N+C+TT      +ER    
Sbjct: 581  -------YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLIKKKDIERWSLV 633

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P+G +  + + K  G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 634  KDEDYIVTPNGDM-FVTTKKRKGLLAQILEELLSARKEAKRELAAETDPFKKAVLNGRQL 692

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEV 1037
            ALK++ANS+YG  G +N +     +A   T  GR+++  T   V+           + +V
Sbjct: 693  ALKISANSVYGLTGATNGKLPCLEIASSTTAFGRQMIERTKHEVEERYCIKNGYSHDAQV 752

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G  ++A+A  +       V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 753  IYGDTDSVMVKFGTKELAEAMKLGEDAANYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG 812

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + +     Y+ ++ KG++ VRRD  LL + V +  L  IL +R      E + +++  
Sbjct: 813  --LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDRDVPGAQEYVKDTIA- 869

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   +V + K VITK LTK  + Y  A  Q HV++A R+K+    +  + GD V Y
Sbjct: 870  ---DLLQNRVDMSKLVITKALTK--DDY--AAKQAHVELAHRMKKRDAGSAPALGDRVAY 922

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            ++          + G     R  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 923  VMV-------KGATGSKNFERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILGET 975


>gi|290985690|ref|XP_002675558.1| predicted protein [Naegleria gruberi]
 gi|284089155|gb|EFC42814.1| predicted protein [Naegleria gruberi]
          Length = 1019

 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 183/654 (27%), Positives = 303/654 (46%), Gaps = 80/654 (12%)

Query: 636  CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL--K 693
            C  +E+ +L      +  +D D++ G+N+  FDL  L++RA+  +  S  +  +GR+  K
Sbjct: 272  CFKTEKEMLETWRNFVIGIDPDIITGYNVINFDLPYLINRAKALK--SGSFPFLGRIAGK 329

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            RS+M         +G+  S  I   I GR+  D     +   +  SY+L  ++   L  D
Sbjct: 330  RSQMKNSTFSSKAYGTRESKDIN--IEGRIQLDVMQAIQRDHKLSSYTLNSVSAHFLG-D 386

Query: 754  RKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
            +KE   H ++      + E    L  Y   DA+L + L+  L ++    ++  ++G    
Sbjct: 387  QKEEVHHSIISTLHEGSDEDRRRLASYCLKDAFLPIRLLEKLLIIINYIEMARVTGIPVS 446

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
              L+  +  +V   LL   + ++Y++P   T  K  K               +E  +E+ 
Sbjct: 447  FILKRGQQIKVISQLLRKAKKEEYLMP---TISKSGK---------------KESLDEEG 488

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                +T             Y GG VL PK G YD  I  LDF SLYPSI+  +N+C+TT+
Sbjct: 489  ETSEET-------------YEGGFVLSPKTGYYDIPITTLDFASLYPSIMIAHNLCYTTL 535

Query: 932  ER-------SPDGLVPHLPSSK-------TTGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
             +       S D  V   PS           G+LP +L+ L+Q R+  K  M  A+  L+
Sbjct: 536  LKKEDLAKLSEDQYV-KTPSGDYFIKREVQQGLLPLVLEELLQARKQAKKDMDKATDPLE 594

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
               ++ +Q ALK++ANS+YG  G          +++ +T  GRE+++ T ++V+ N  ++
Sbjct: 595  KAVMNGRQLALKISANSVYGFTGAQVGMLPCLEISQSVTSFGREMIQHTKEMVEENYTIK 654

Query: 1037 --------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                    VIYGDTDS+M+  G  DI KA  +     QE++K + K ++++ + +Y   L
Sbjct: 655  NGYETNAVVIYGDTDSVMVKFGTKDIRKAMELGLHASQEISKTFVKPIKLEFEKVYYPYL 714

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            LL KK+YA   + +     ++ ++ KG+  VRRD   L + + + CL  IL +RS E  V
Sbjct: 715  LLSKKRYAG--LLWTKPEKFDKMDAKGIVTVRRDNCALVRNLVNTCLHLILIKRSIESAV 772

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
                N    V  D+   ++ +   VITK L K  + Y     Q HV++A R+ +    T 
Sbjct: 773  ----NYAKSVISDLLMNRMDISMLVITKALVKKSDKY--KAKQSHVELAERMSKRDPLTA 826

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
               GD +PY+I         +  G     +  D +   +    ID  YY   QI
Sbjct: 827  PRVGDRIPYVIV-------KAHKGAKAYEKSEDPIWVLENSIPIDAQYYLEHQI 873


>gi|2581880|gb|AAC47767.1| DNA polymerase alpha [Leishmania braziliensis]
 gi|2581904|gb|AAC47779.1| DNA polymerase alpha [Leishmania panamensis]
          Length = 307

 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 180/338 (53%), Gaps = 66/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  R V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYRTVNYRLL 62

Query: 744 QLA-KTQLNKDRKEVGPHD----VLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K     +    VL   M  +   + +++      A LS  ++ HL V+
Sbjct: 63  SLAHQMQLQGITKGTNSFEPGTSVLTPAMLSSSRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGRD---- 176

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                                  +D   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 177 -----------------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 213

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 214 YPSLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 271

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 272 VDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANS 307


>gi|428184446|gb|EKX53301.1| DNA polymerase delta catalytic subunit, partial [Guillardia theta
            CCMP2712]
          Length = 910

 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 184/684 (26%), Positives = 307/684 (44%), Gaps = 98/684 (14%)

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--R 694
            E  E  L+    + +++LD D+L GHNI  FDL+ +  RAQV ++P   + ++GR+K   
Sbjct: 258  EREEDLLMAWQHLVVHELDLDLLTGHNIFKFDLNYIARRAQVLKLPE--FFELGRMKGKY 315

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
            + +         FG      +   + GR+  D +       +  SY L  LAK  L   +
Sbjct: 316  TAIKTTDSQSKAFGHNQFHYL--PMTGRMQMDIYQVMTKQHKLSSYKLDSLAKHFLGMQK 373

Query: 755  KEVGPHDVLKMFQTLESLMELI--EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
             +V P  + + FQ  ++    I  +Y   D  L   L+  L VLP   +++ ++G     
Sbjct: 374  DDVSPKQIFE-FQVKDASHRGIVAKYCAKDCELVYRLIERLDVLPQFLEMSKVTGVTMND 432

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
                 +  +V   ++   RA  +++PD        + A                      
Sbjct: 433  LNTRGQQIKVFTQIVREARASDFVIPD-------MRAAP--------------------- 464

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
                TS +D +       Y G  VL P++G+Y + I  LDF SLYPSII+  N+ + T+ 
Sbjct: 465  ----TSRDDVQ-------YQGAFVLPPQRGIYHEPIATLDFASLYPSIIRGDNLSYETLV 513

Query: 933  RSPDGLVPHLPSS-----------KTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
            ++   L    P S              G+LP + KNL+  R+  K  M  T   +K   L
Sbjct: 514  QNECELDEDTPVSCIQEYTYKYVQHVEGILPRICKNLLTARKKAKKEMALTDDPIKKGLL 573

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            + +Q ALK++ NS+YG  G         P+A  +T  G++++++T   VQ N N  VIYG
Sbjct: 574  NGKQLALKVSCNSVYGFTGAGRGMLPCLPIASSVTAIGQQMIKTTSQTVQENFNATVIYG 633

Query: 1041 DTDSIMIH----SGIDDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYA 1095
            DTDS+M++     G + + KA  +  +  + V  K+K   E++ + +Y   +L  KK+YA
Sbjct: 634  DTDSVMVNFHCGEGPEALKKALELGQRAAKLVTSKFKPPNELEFEKVYMPYILYSKKRYA 693

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL-----SERSCED----- 1145
                   D    + I+ KGL +VRRD S L +++    +  ++      E +C D     
Sbjct: 694  GQMYTSPDKP--DKIDVKGLQVVRRDNSELQRDLMKNLIKTMVKEITQDELTCMDSGASK 751

Query: 1146 --VVES-IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP-----HVQVAL 1197
              V++S I + +    +D+  G+  LEKYVI+++++K      +A         HV++A 
Sbjct: 752  LEVLKSRISDLVRSYNQDLVQGKFPLEKYVISQSISKKGYEKTNAAGFKSAALGHVKLAE 811

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCE------------QGTSSGSSVGIAQRARHPDELKKG 1245
            R+++    TG  AGD V YII  E             G +  +     +  R  D     
Sbjct: 812  RMEKREPGTGPVAGDRVHYIIVKEAPHLSHIKNRTIDGVTYAAKDWPPRHERCEDPTYVK 871

Query: 1246 DGKWMIDIDYYASQQI-HPVVSRL 1268
            +    +D+ YY   Q+ +PV S L
Sbjct: 872  EKNLTVDLAYYLENQLKNPVTSLL 895


>gi|358375619|dbj|GAA92199.1| DNA polymerase delta large chain [Aspergillus kawachii IFO 4308]
          Length = 1105

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 175/658 (26%), Positives = 305/658 (46%), Gaps = 107/658 (16%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS-- 709
            K+D DV++G+NI+ FD   LL RA+  +      W+++  ++       +   T F S  
Sbjct: 385  KVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTRLNGVQS------QSKETNFSSKQ 438

Query: 710  -GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
             G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    + +++
Sbjct: 439  MGNRDTKSTNTNGRIQLDMLQLVQRDYHLR--SYTLNSVSYEFLGEQKEDVHHTMITELY 496

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
              T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++
Sbjct: 497  NGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFI 554

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      ++ ++P+                                     T  ND +
Sbjct: 555  SQLFRKALEQQLVIPN-------------------------------------TKSNDEQ 577

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT      VER    
Sbjct: 578  D------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVERLKLV 631

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P+G +    +    G+L ++L+ L+  R+  K  + T +   K   L+ +Q 
Sbjct: 632  KDEDYIVTPNGDM-FCTAKVRKGLLSQILEELLSARKRAKKELATETDPFKKAVLNGRQL 690

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +V
Sbjct: 691  ALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKV 750

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+D++ +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 751  IYGDTDSVMVKFGVDNLEEAMKLGQEASEYVSSKFLKPIKLEFEKVYFPYLLINKKRYAG 810

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + + +   Y+ ++ KG++ VRRD  LL + V +  L +IL ER  +   + + +++  
Sbjct: 811  --LYWTNPNKYDKMDTKGIETVRRDNCLLVQNVIETVLQKILVERDIDGAQDYVKDTI-- 866

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK L+K  +AY     Q HV++A R+++    +  + GD V Y
Sbjct: 867  --SDLLQNKIDMSKLVITKALSK--DAY--TAKQAHVELAERMRKRDAGSAPTLGDRVAY 920

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +I    G       G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 921  VIIKGAG-------GSKNYERSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|156041052|ref|XP_001587512.1| hypothetical protein SS1G_11504 [Sclerotinia sclerotiorum 1980]
 gi|154695888|gb|EDN95626.1| hypothetical protein SS1G_11504 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1106

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 199/818 (24%), Positives = 356/818 (43%), Gaps = 131/818 (16%)

Query: 496  FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K+ G SW+ +   K++  P   R S C+ E  V S +D+         A++ P+ 
Sbjct: 251  FMVDVKIHGMSWVEVEAKKYTIVPEHNRQSNCQIE-AVTSYRDLIAHKPEGEWAKMAPLR 309

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A++V  +  K           KP + + F +   
Sbjct: 310  ILSFDIECAGRKGVFPEANQDPVIQIANIVTRYGEK-----------KPFVRNVFCL--- 355

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D  S   +  +     E  +L++    L ++D D+++G+NI+ FD
Sbjct: 356  ---------------DTTSLIVNTQIFEFDKEEKMLSKWRDFLEEVDPDIIIGYNIANFD 400

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               LL RA   ++ + S W+++  ++          + +   G      +   GRL  D 
Sbjct: 401  FPYLLDRADHLKIKNFSQWTRLKSIQSQAKTSNFSSKQM---GNRDTKATNTNGRLQLDL 457

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLS 786
                +   +  SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L 
Sbjct: 458  LQLVQRDHQLRSYTLNSVCAQFLGEQKEDVHHTMITELFNGTPESRRRLAVYCLKDAYLP 517

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              LM  LS L    ++  ++G  +   L  +R Q+V+++  L      +K ++P+  T  
Sbjct: 518  QRLMDKLSCLENYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQKLVIPNLSTAS 575

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
             E +                                          Y G  V+EP +G Y
Sbjct: 576  SEEQ------------------------------------------YEGATVIEPTRGYY 593

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSKTT 948
               I  LDF SLYPSIIQ +N+C+TT           +E+  D +V       + + +  
Sbjct: 594  SVPIATLDFASLYPSIIQAHNLCYTTLLKKDVVEALNLEKDEDYIVTPNGDMFVTTKQRK 653

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +   
Sbjct: 654  GLLTQILEELLTARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATVGKVPC 713

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKA 1059
             P+A   T  GR+++  T   V+    +        +VIYGDTDS+M+  G+ ++ +A  
Sbjct: 714  LPIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYGDTDSVMVKFGVKELTEAMK 773

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +  Q V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ V
Sbjct: 774  LGEEAAQYVSSKFIKPIKLEFEKVYYPYLLINKKRYAGLYWTNPD--KYDKMDTKGIETV 831

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD   L + V +  L  IL ++  +   + + +++     D+   ++ + K VITK L 
Sbjct: 832  RRDNCRLVQNVIETVLRMILIDQDVQGAQDYVKDTI----SDLLQNKIDMSKLVITKALA 887

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K   A   AK Q HV++A R+K+    +  + GD V Y+I          S G     R 
Sbjct: 888  K---ADYTAK-QAHVELAERMKKRDAGSAPTLGDRVAYVII-------KGSAGAKNFERS 936

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
             D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 937  EDPIFVLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 974


>gi|367024855|ref|XP_003661712.1| hypothetical protein MYCTH_2301456 [Myceliophthora thermophila ATCC
            42464]
 gi|347008980|gb|AEO56467.1| hypothetical protein MYCTH_2301456 [Myceliophthora thermophila ATCC
            42464]
          Length = 1081

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 180/659 (27%), Positives = 302/659 (45%), Gaps = 102/659 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L ++D D++ G+NI+ FD   LL RA+  +V     WS++  +K           T F S
Sbjct: 381  LVQVDPDIITGYNIANFDFPYLLDRAKHLKVQGFEYWSRLRGVKSFSKD------TSFSS 434

Query: 710  ---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
               G      + I GRL  D     +   +  SY+L  ++   L + +++V    + ++F
Sbjct: 435  KQMGNRDTKATNIHGRLQLDLLQLIQRDHQLRSYTLNSVSFHFLGEQKEDVHHSMITELF 494

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            + T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V++L
Sbjct: 495  EGTPESRRRLALYCLKDAYLPQRLMEKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFL 552

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      +K ++P                                 N  +++S     
Sbjct: 553  SQLYRKALEQKLVIP---------------------------------NLRSESSEEQ-- 577

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +  YD  I  LDF SLYPSI+Q +N+C+TT      VE+    
Sbjct: 578  -------YEGATVIEPIRNYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKKDVEKWNLK 630

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P G +  + + +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 631  KDEDYIVTPSGDM-FVTTKQRKGLLAQILEELLAARKQAKRELAAETDPFKKAVLNGRQL 689

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +N +     +A   T  GR+++  T   V+    +        +V
Sbjct: 690  ALKISANSVYGLTGATNGKLPCLEIASSTTGFGRQMIEKTKQEVEKRYTIANGYSHDAQV 749

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G  D+A+A  +     Q V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 750  IYGDTDSVMVKFGTTDLAEAMKLGEDASQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG 809

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +     D   Y+ ++ KG++ VRRD  LL++ V +  L  IL +R      E + +++  
Sbjct: 810  LYWTRPDR--YDKMDTKGIETVRRDNCLLAQTVIEKVLRMILIDRDVSGAQEYVKDTI-- 865

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK LTK  E Y  A  Q HV++A R+K+    +    GD V Y
Sbjct: 866  --SDLLQNKIDMSKLVITKALTK--EDY--AAKQAHVELAQRMKKRDPGSAPGLGDRVAY 919

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            ++          + G     R  D +   +    ID  YY   Q+   ++R+   I G+
Sbjct: 920  VMV-------KGAAGSKNFERSEDPMYVLEHNVPIDTKYYLDNQLAKPLTRIFEPILGS 971


>gi|52696275|pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
            Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
          Length = 774

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 292/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+ER ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFAL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++   ++T E+L  +  Y   DA ++ EL      LP+  QL+ + G +LW  + + 
Sbjct: 291  YAEEITTAWETGENLERVARYSMEDAKVTYEL--GKEFLPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDEKELARRRQ---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +Y GG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYEGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ +K  MK T   ++ + LD +Q+A+
Sbjct: 429  KEYDVAPQ--VGHRFCKDFPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GRE +  T+  ++     +VIY DTD    
Sbjct: 487  KILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + ++ +N K    LE++ +G YKR   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  +L +   E  V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLKDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPTKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|393240523|gb|EJD48049.1| hypothetical protein AURDEDRAFT_102277 [Auricularia delicata
            TFB-10046 SS5]
          Length = 1067

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 180/684 (26%), Positives = 308/684 (45%), Gaps = 101/684 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS+V   ++ E  LL+     +  +D DV+ G+NI+ FDL  LL RA+  +V    ++K+
Sbjct: 328  GSDVRSFDN-EADLLSAWQKFVVTVDPDVITGYNIANFDLPYLLDRAKALKVDG--FNKL 384

Query: 690  GRLKR--SEMPKLRKGRTIFGSGASPGIMSC-IAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            GR+    + +         FG   S     C I GRL  D F   +   +  SYSL  ++
Sbjct: 385  GRMTNIATAIKDTHFASKAFGQRDSK---ECNIDGRLQLDMFQYMQREHKLRSYSLNAVS 441

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + ++EV  H  +   Q  T ES   L  Y   DA+L   LM  L       ++  
Sbjct: 442  AQFLGEQKEEVH-HSAITELQNGTAESRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMAR 500

Query: 805  ISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
            ++G  +   L  AR Q+++ +  L+   +   Y++P                  G +D+ 
Sbjct: 501  VTGVPFNFLL--ARGQQIKVISQLMRKAKEDGYLIP-------------AMKGEGSDDQ- 544

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                        Y G  V++PK G Y + I  LDF+S+YPSI+ 
Sbjct: 545  ----------------------------YEGATVIDPKTGYYKEPIATLDFSSMYPSIMM 576

Query: 923  EYNICFTTV--ERSPD--GLVPHLPSSKT------------TGVLPELLKNLVQRRRMVK 966
             +NIC+TT+  +++ D  GLV  +  ++T             G+LP +L+NL+  R+  K
Sbjct: 577  GHNICYTTMTDKQTIDRLGLVKDVDYTQTPQNTFFVKPGRRKGLLPTILENLLSARKRAK 636

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K  +   K   LD +Q ALK++ANS+YG  G S        ++   T  GR+++  T
Sbjct: 637  ADLKNETDPFKRAVLDGRQLALKISANSVYGFPGASTGHLPCTDISSTTTAYGRQMIEKT 696

Query: 1026 VDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
              +V+++  +        +V+YGDTDS+M+  G  D+A    +  +    V   + K ++
Sbjct: 697  KSVVEDHYRIVNGFEHDAQVVYGDTDSVMVKFGPSDLATCMRLGAEAADLVTTHFVKPVK 756

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L     D  L +
Sbjct: 757  LEFEKVYWPYLLINKKRYAGLYWTKTD--KYDKLDAKGIESVRRDNCRLVSTTIDTVLHK 814

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L ++  +  V  +     KV  D+   ++ + + VITK L K       A  Q HV++A
Sbjct: 815  MLIDQDPDGAVTYVK----KVISDLLQNKIDMSQLVITKALAKADY----AGKQAHVELA 866

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R++Q    +  + GD V Y+I         +    A   +  D +   +    +D  YY
Sbjct: 867  QRMRQRDAGSAPNVGDRVAYVII-------KARTNAAAYEKSEDPIYVLENNIPLDTHYY 919

Query: 1257 ASQQIHPVVSRLCASIEGTSPERL 1280
               Q+   + R+   + G+  + L
Sbjct: 920  LDNQLAKPLMRIFEPVLGSKAKSL 943


>gi|350397573|ref|XP_003484918.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 2
            [Bombus impatiens]
          Length = 1104

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 305/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E+ +L +    + +LD D+  G+NI+ FD   L++RA+   V    +  
Sbjct: 364  VGCQVLSFEK-EQKMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRAKHLNVRDFYF-- 420

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +S +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 421  LGRIKNIKSVIKTQVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 478

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 479  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 537

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                          
Sbjct: 538  VTGVSICSLLTRGQQIKVVSQLLRKTREKDYLIPV------------------------- 572

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             HR       + G  V+EPK+G Y   I  LDF+SLYPSII  +
Sbjct: 573  -----------------HRGQASDEQFEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAH 615

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +    +   + S   T               G+LPE+L++L+  R+  K  +
Sbjct: 616  NLCYTTLLKRDTEIKLKIDSDDITVTPSDSKFVKATLRKGILPEILESLLSARKAAKAEL 675

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 676  KKETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQE 735

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +         V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 736  VEEQYCVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 795

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 796  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 853

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + V+TK LTK       A  Q HV++A ++
Sbjct: 854  DRNPNDAL----NYAKQIISDLLCNRIDISQLVVTKELTKTDY----AAKQAHVELAAKM 905

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  + + +    ID +YY  
Sbjct: 906  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDPIYVLENNVP--IDTNYYLE 957

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 958  NQLAKPLVRIFEPILGEKAESL 979


>gi|116199119|ref|XP_001225371.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88178994|gb|EAQ86462.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 1104

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 201/816 (24%), Positives = 355/816 (43%), Gaps = 132/816 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   + G +W+        P     S C++E  + S KD+         +++ P+ + 
Sbjct: 250  FMVDCSIAGMAWVEAPAGKYIPMTNTQSNCQFEAEI-SYKDLISHKPVGEWSKMAPLRIL 308

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            + ++     K +F +    + I  A+VV  +  K           KP + + F +     
Sbjct: 309  SFDIECAGRKGIFPEAHTDSVIQIANVVTKYGDK-----------KPFVRNVFCL----- 352

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                         D  S   +  +    +E  +L+     L ++D D++ G+NI+ FD  
Sbjct: 353  -------------DTTSPIVATQVMSFDTEDQMLSAWRNFLMEVDPDIITGYNIANFDFP 399

Query: 671  VLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
             L+ RA+  +V     WS+      S+       +     G     ++ I+GRL  D   
Sbjct: 400  YLIDRAKHLKVRDFDYWSRTRVRSYSKESNFSSKQM----GNRDTKVTNISGRLQLDLLQ 455

Query: 730  CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSME 788
              +   +  SY+L  ++   L + +++V    + ++F+ T ES   L  Y   DA+L   
Sbjct: 456  LIQRDHQLRSYTLNSVSSHFLGEQKEDVHHSMITELFEGTPESRRRLALYCLKDAYLPQR 515

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKE 846
            LM  LS L    ++  ++G  +   L  AR Q+V++L  L      +K ++P+  T   E
Sbjct: 516  LMEKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFLSQLCRKALEQKLVIPNMTTESSE 573

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
             +                                          Y G  V++P K  YD 
Sbjct: 574  EQ------------------------------------------YEGATVIDPIKNYYDV 591

Query: 907  YILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLPSSKTTG 949
             I  LDF SLYPSI+Q +N+C+TT      +ER           +P G +  + S +  G
Sbjct: 592  PIATLDFASLYPSIMQAHNLCYTTLIKKKDIERWNLKKDEDYIVTPSGDM-FVTSKQRKG 650

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +N +    
Sbjct: 651  LLAQILEELLSARKQAKRELAAETDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCL 710

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAI 1060
             +A   T  GR+++  T   V+N  N+        +VIYGDTDS+M+  G  D+A+A  +
Sbjct: 711  EIASSTTSFGRQMIERTKQEVENRYNIANGYSHDAQVIYGDTDSVMVKFGTTDLAEAMRL 770

Query: 1061 AGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
                 Q V+ K+ K ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VR
Sbjct: 771  GEDASQFVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKHDKMDTKGIETVR 828

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD  LL + V +  L  IL +R      E + +++     D+   ++ + K VITK LTK
Sbjct: 829  RDNCLLVQTVIEKVLRMILIDRDVMGAQEYVKDTI----ADLLQNKIDMSKLVITKALTK 884

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
              + Y  A  Q HV++A R+++    +    GD V Y++          + G     R  
Sbjct: 885  --DDY--AAKQAHVELAQRMRKRDPGSAPGLGDRVAYVMV-------KGAAGSKNFERSE 933

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            D +   +    ID  YY   Q+   + R+   I G+
Sbjct: 934  DPMYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILGS 969


>gi|156936857|ref|YP_001434653.1| DNA polymerase II [Ignicoccus hospitalis KIN4/I]
 gi|156565841|gb|ABU81246.1| replicative DNA polymerase I [Ignicoccus hospitalis KIN4/I]
          Length = 786

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 178/664 (26%), Positives = 306/664 (46%), Gaps = 117/664 (17%)

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            L  + +++ L+     E+ + D DV+VG+N + FD   L+ R++V  V   +  K+G   
Sbjct: 210  LSQDKNDKDLIVWFKKEMLERDPDVVVGYNSNSFDWPYLIERSKVVGVRLDVGRKVG--- 266

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK--TQLN 751
                        I  +GA   +   + GRL  D +  ++++      +L  +A     + 
Sbjct: 267  -----------VIPTTGAYGHV--SVPGRLNVDVYDFAKEVYEVKVKTLENVADYFNVMK 313

Query: 752  KDRKEVGPHDVLKMFQTLESLME---LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
            KD + + PH ++  +Q  E   +   L +Y E DA LS  LM     +P   QL+ ++G 
Sbjct: 314  KDERPLIPHHLI--YQYWEDPQKRDVLRKYNEADA-LST-LMLAELFIPFGEQLSYLTGL 369

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
               + +  +   RVE+ L+        +VP++     E K+A                  
Sbjct: 370  PLDQVMAASVGYRVEWYLMRVAFVTNELVPNRV----ERKVA------------------ 407

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
                                 +Y G +VL P KG+++  + +LDF+S+YP+I+ +YN+  
Sbjct: 408  ---------------------SYKGAIVLRPLKGVHEN-VAVLDFSSMYPNIMIKYNVGP 445

Query: 929  TTVERSPDGLVP---------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK--I 977
             T+ R  + + P         ++   +        L  L+  R+ +K  MK+ S      
Sbjct: 446  DTLVRPGEKVSPDEVYVSPAGYMFKKRPDAFFKRSLVTLLNLRKEIKERMKSLSPEDPLY 505

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEV 1037
            + LD +Q+A+K+ AN+ YG +G+ ++R+Y +  AE +T  GRE++   + + +  L L+V
Sbjct: 506  KLLDNRQKAVKVLANAHYGYMGWPHARWYCRECAEAVTSWGRELILKAIQMAR-ELGLKV 564

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAA 1096
            IYGDTDS+ +   I D  K + +  ++ +E+       EI +D +YK++   + KK+YA 
Sbjct: 565  IYGDTDSLFV---IYDKEKVEKLIERIEKELG-----FEIKIDKIYKKLFFTEAKKRYAG 616

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +    +DG     I+  G + VR DW+ ++KEV +  +  +L E      VE + NS++ 
Sbjct: 617  I---LEDGR----IDVVGFEAVRGDWAEVAKEVQEKIIEIVLKEGDVNKAVEYV-NSII- 667

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
              E +R G+V +EK VI KTL K  + Y      PHV  A R  + GY      GD V Y
Sbjct: 668  --EKLRRGEVPIEKLVIWKTLEKSLDEY--KSEPPHVAAAKRAIERGYE--VKKGDKVGY 721

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +I    G  S  +         P  L + +   MID +YY   Q+ P   R+     G +
Sbjct: 722  VIVKGVGKLSSRA--------WPWFLVQKE---MIDYNYYIDHQVIPAAMRILGYF-GIT 769

Query: 1277 PERL 1280
              RL
Sbjct: 770  EARL 773


>gi|50308039|ref|XP_454020.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643155|emb|CAG99107.1| KLLA0E01607p [Kluyveromyces lactis]
          Length = 1101

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 224/905 (24%), Positives = 397/905 (43%), Gaps = 156/905 (17%)

Query: 407  SPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAF-GQAEIP------AGEN 459
            +P+ F    Q+  L L+  +     N NV +  + P +  + F G A+IP         N
Sbjct: 164  APLGFH---QENILTLQQYLNEHYEN-NVDSIKIVPKQSIWGFSGDAKIPFLQIFVKNPN 219

Query: 460  YVLKINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSC 516
             + KI   F+   + P D      C+     +  L L ++   + G SW+++  SK+   
Sbjct: 220  LLNKIRTGFEKGYIQPNDKWFVGGCTTYDNIAFPLRL-MIDCGIVGMSWITLPASKYQLV 278

Query: 517  PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT-----VFNKRQDVNE 571
            P  QR+S C++E+ ++  KD+    +    +   P+ + + +++      VF + +  + 
Sbjct: 279  PVNQRISTCQFEVNINY-KDLIAHPAEGEWSHNAPLRIMSFDIECAGRPGVFPEPEHDSV 337

Query: 572  IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
            I  A+VV    A            KP + + FTV         P+             GS
Sbjct: 338  IQIANVVSISGAA-----------KPFIRNVFTV-----NSCSPI------------TGS 369

Query: 632  NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
             +      E  +L      + ++D DV++G+N + FD   L+ RA    V S  +   GR
Sbjct: 370  QIFE-HDKESDMLEHWRDFIVEVDPDVVIGYNTTNFDFPYLIDRAAALGVQS--FPYFGR 426

Query: 692  LK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
            L   + E+         +G+  S  I   I GRL  D     +   +  SY+L  ++   
Sbjct: 427  LSNVKQEVKSSTFSSKAYGTRESKNIN--IDGRLQLDLLQFVQREYKLRSYTLNAVSAHF 484

Query: 750  LNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    E+   L  Y   DA+L + LM  L  L    +++ ++G
Sbjct: 485  LGEQKEDVH-HSIITTLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMSRVTG 543

Query: 808  NLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
              +   L  AR Q+++ +  L       + ++P+         M+ Q S+          
Sbjct: 544  VPFMYLL--ARGQQIKVISQLFRKCLQIQTVIPN---------MSSQGSDE--------- 583

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     Y G  V+EPK+G YD  I  LDF+SLYPSI+  +N
Sbjct: 584  ------------------------QYEGATVIEPKRGYYDVPIATLDFSSLYPSIMMAHN 619

Query: 926  ICFT------TVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            +C+T      TV+R           +P+  +  + S    GVLPE+L+ L+  R+  K  
Sbjct: 620  LCYTTLCDRATVQRLNLKLDEDYIVTPNNDI-FVTSKVRRGVLPEILEELIGARKKAKFD 678

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  GR ++ +T +
Sbjct: 679  LKNETDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTSFGRTMIETTKN 738

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEID 1078
             V+N   ++        V+YGDTDS+M+  G  D+ ++  +  +    V+  +K  ++++
Sbjct: 739  AVENKYCIKNGASHDAVVVYGDTDSVMVKFGTTDLEESMKLGAEAAAYVSSLFKDPIKLE 798

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + + +   Y+ +++KGL  VRRD   L   V +  L +IL
Sbjct: 799  FEKVYFPYLLINKKRYAG--LYWTNPKKYDKLDQKGLASVRRDSCPLVSIVMNKVLKKIL 856

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN-QPHVQVAL 1197
              R+ +  ++ I  ++    +D+   +  + K +I+KTL       P+  N QPH  +A 
Sbjct: 857  IGRNVDGAMQFIRETI----DDILQNRCDISKLIISKTLA------PNYTNPQPHAVLAE 906

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+K+     G + GD V Y+I        G    +  RA  P  L   +    +D  YY 
Sbjct: 907  RMKKRD-GVGPNVGDRVDYVII-------GGGDKLFNRAEDP--LYVLEQNLQLDSIYYL 956

Query: 1258 SQQIH 1262
            S Q+ 
Sbjct: 957  SNQLQ 961


>gi|350397570|ref|XP_003484917.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 1
            [Bombus impatiens]
          Length = 1090

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 305/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  E  E+ +L +    + +LD D+  G+NI+ FD   L++RA+   V    +  
Sbjct: 350  VGCQVLSFEK-EQKMLEKWADFVRQLDPDIFTGYNINNFDFPYLINRAKHLNVRDFYF-- 406

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +S +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 407  LGRIKNIKSVIKTQVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 464

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  + +  ++  
Sbjct: 465  YHFLQEQKEDVH-HSIITDLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIFIYMEMAR 523

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K Y++P                          
Sbjct: 524  VTGVSICSLLTRGQQIKVVSQLLRKTREKDYLIPV------------------------- 558

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                             HR       + G  V+EPK+G Y   I  LDF+SLYPSII  +
Sbjct: 559  -----------------HRGQASDEQFEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAH 601

Query: 925  NICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +    +   + S   T               G+LPE+L++L+  R+  K  +
Sbjct: 602  NLCYTTLLKRDTEIKLKIDSDDITVTPSDSKFVKATLRKGILPEILESLLSARKAAKAEL 661

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 662  KKETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQE 721

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +         V+YGDTDS+MI  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 722  VEEQYCVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEF 781

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L 
Sbjct: 782  EKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLI 839

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R+  D +    N   ++  D+   ++ + + V+TK LTK       A  Q HV++A ++
Sbjct: 840  DRNPNDAL----NYAKQIISDLLCNRIDISQLVVTKELTKTDY----AAKQAHVELAAKM 891

Query: 1200 KQSGYSTGCSAGDTVPYI-ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            K+         GD VPY+ I   +GT +       Q+A  P  + + +    ID +YY  
Sbjct: 892  KKRDAGNAPKLGDRVPYVFIRAAKGTPA------YQKAEDPIYVLENNVP--IDTNYYLE 943

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 944  NQLAKPLVRIFEPILGEKAESL 965


>gi|170067371|ref|XP_001868453.1| DNA polymerase delta catalytic subunit [Culex quinquefasciatus]
 gi|167863529|gb|EDS26912.1| DNA polymerase delta catalytic subunit [Culex quinquefasciatus]
          Length = 1100

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 184/690 (26%), Positives = 313/690 (45%), Gaps = 111/690 (16%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  ES E+ LL++    + +LD D+L G+NI+ FD+  LL+RA   +V +  +  
Sbjct: 359  VGSQVLSYES-EQELLDKWASFVRELDPDILTGYNINNFDIPYLLNRANHLKVKN--FEY 415

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQ 744
            +GR+   RS + +        G   +  +     GR+  D  F+  RD  LR  SY+L  
Sbjct: 416  LGRVTNIRSVIKETVIQSKQMGRRENKSVN--FEGRVPFDLLFVLLRDYKLR--SYTLNA 471

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++
Sbjct: 472  VSYHFLQEQKEDVH-HSIITDLQNENEQTRRRLAMYCLKDAYLPLRLLNKLMCIVNYMEM 530

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   LL   R   Y++P                        
Sbjct: 531  ARVTGVPLQCLLTRGQQIKVMSQLLRKTRKCGYLIPSY---------------------- 568

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                          +S +D +       Y G  V+EPK+G Y   I  LDF SLYPSI+ 
Sbjct: 569  -------------QSSGSDEQ-------YEGATVIEPKRGYYADPISTLDFASLYPSIMM 608

Query: 923  EYNICFTTVERS---------PDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVK 966
             +N+C+TT+ +           D  +   P++ T        G+LPE+L++L+  R+  K
Sbjct: 609  AHNLCYTTLLQPGFNKEKLGLTDDQITRTPANNTFVKASVRKGILPEILESLLGARKRAK 668

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K  +   K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T
Sbjct: 669  ADLKVETDPFKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQT 728

Query: 1026 VDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+     E        VIYGDTDS+M++ G+  + ++  +  +  + V+ K+ K ++
Sbjct: 729  KQEVEQRYTAENGYENDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEFVSAKFVKPIK 788

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL +
Sbjct: 789  LEFEKVYYPYLLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVANMMNSCLQK 846

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L ER+ E  VE       +V  D+   ++ + + VITK L K       A  Q HV++A
Sbjct: 847  LLIERNPEGAVEHAK----QVIADLLCNRIDISQLVITKELAKTDY----AAKQAHVELA 898

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------ 1250
             ++K+    +    GD VPY+I             I      P  +K  D  ++      
Sbjct: 899  AKMKKRDAGSAPKLGDRVPYVI-------------INAAKNTPAYMKAEDPIYVLENCVP 945

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            ID +YY   Q+   + R+   I G   E +
Sbjct: 946  IDANYYLENQLSKPLLRIFEPILGEKAESI 975


>gi|146097987|ref|XP_001468284.1| putative DNA polymerase delta catalytic subunit [Leishmania infantum
            JPCM5]
 gi|134072651|emb|CAM71367.1| putative DNA polymerase delta catalytic subunit [Leishmania infantum
            JPCM5]
          Length = 1032

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 200/806 (24%), Positives = 352/806 (43%), Gaps = 122/806 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            FLV   + G +WL+++      +P + S C+ E+   S +D++          + P  + 
Sbjct: 182  FLVDNDIGGSNWLTLTYGKFFASPIKTSTCQIEVAC-SHEDVQNHEPLGDYLSIAPFRIL 240

Query: 556  AINL-----KTVFNKRQD--VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +I++     K +F + +   V +I +  V   H+++            P   + FT+   
Sbjct: 241  SIDIECQGRKGLFPEPEHDPVIQIANHCVEYGHESE------------PLTKTIFTL--- 285

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+            AG+ VL  E+    LL      +  LD D+L G+NI  FD
Sbjct: 286  --KSCAPI------------AGAQVLSYETEAEMLLAWATF-MKALDPDILTGYNICNFD 330

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
               LL+RA   +  S  +   GR          K       G        + GR++ D  
Sbjct: 331  FPYLLNRATALKA-SDAFHYWGRQVHERTVARDKKFQSKQMGNREYTELTLEGRIIMDAM 389

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLS 786
            +  +   +  SYSL  +++  L + +++V  H ++   Q    E+   L  Y   DA+L 
Sbjct: 390  VVIQRDYKLRSYSLNSVSQNFLGEQKEDVH-HSIISDLQHGDEETRRRLAVYCLKDAFLP 448

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            ++L+  L  +    ++  ++G   G  L+  +  +V  +LL   + KK +VP        
Sbjct: 449  VKLLDRLMCIVNNVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVP-------- 500

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                            VE     D                RG  Y G  V++P KG Y+ 
Sbjct: 501  ---------------TVEYTGGSD----------------RG--YEGATVIDPIKGFYNC 527

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPH--LPSSKTT----------GVLPE 953
             +  LDF SLYPSII  +N+C++T+ R  D  L P   L  S T+          G+LPE
Sbjct: 528  PVATLDFASLYPSIIIAHNLCYSTLVRPADARLYPEDALDRSPTSDVFVKKEVFPGILPE 587

Query: 954  LLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            +L++L+  R+  +  MK    + L+ + L+ +Q ALK++ANS+YG  G    +     ++
Sbjct: 588  VLQDLLAARKHARAMMKDVPMNSLEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEIS 647

Query: 1012 ELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGK 1063
              +T  GR+++  T +LV+       V+YGDTDS+M+    D+       +  A     +
Sbjct: 648  ASVTAYGRQMIDRTKNLVEELYPGARVLYGDTDSVMVKCVTDEKSSDKERLQAAMDFGIE 707

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              ++V+  + K ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD 
Sbjct: 708  AAEKVSSNFLKPIKLEFEKVYFPYLLMNKKRYAGLLWTSTDR--FDKLDAKGIETVRRDN 765

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   +    L++IL  RS E  VE +  ++     D+   ++ +   VITK  +K  +
Sbjct: 766  CPLVARMVSGVLNRILIHRSVESAVEFVKGTI----SDLLLNRLDISNLVITKAFSKAED 821

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y  A  Q H+ +  R++Q   ++  + GD V Y+I         ++ G     R  D +
Sbjct: 822  EYAGA--QAHIALVERMRQRDPASAPTIGDRVAYVII-------KAAKGAKAYERSEDPI 872

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRL 1268
               D    ID  YY   Q+ P + R+
Sbjct: 873  YVLDNNIPIDTQYYLEHQLAPPIMRV 898


>gi|398021685|ref|XP_003864005.1| DNA polymerase delta catalytic subunit, putative [Leishmania
            donovani]
 gi|322502239|emb|CBZ37322.1| DNA polymerase delta catalytic subunit, putative [Leishmania
            donovani]
          Length = 1032

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 200/806 (24%), Positives = 352/806 (43%), Gaps = 122/806 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            FLV   + G +WL+++      +P + S C+ E+   S +D++          + P  + 
Sbjct: 182  FLVDNDIGGSNWLTLTYGKFFASPIKTSTCQIEVAC-SHEDVQNHEPLGDYLSIAPFRIL 240

Query: 556  AINL-----KTVFNKRQD--VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            +I++     K +F + +   V +I +  V   H+++            P   + FT+   
Sbjct: 241  SIDIECQGRKGLFPEPEHDPVIQIANHCVEYGHESE------------PLTKTIFTL--- 285

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+            AG+ VL  E+    LL      +  LD D+L G+NI  FD
Sbjct: 286  --KSCAPI------------AGAQVLSYETEAEMLLAWATF-MKALDPDILTGYNICNFD 330

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
               LL+RA   +  S  +   GR          K       G        + GR++ D  
Sbjct: 331  FPYLLNRATALKA-SDAFHYWGRQVHERTVARDKKFQSKQMGNREYTELTLEGRIIMDAM 389

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLS 786
            +  +   +  SYSL  +++  L + +++V  H ++   Q    E+   L  Y   DA+L 
Sbjct: 390  VVIQRDYKLRSYSLNSVSQNFLGEQKEDVH-HSIISDLQHGDEETRRRLAVYCLKDAFLP 448

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            ++L+  L  +    ++  ++G   G  L+  +  +V  +LL   + KK +VP        
Sbjct: 449  VKLLDRLMCIVNNVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVP-------- 500

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                            VE     D                RG  Y G  V++P KG Y+ 
Sbjct: 501  ---------------TVEYTGGSD----------------RG--YEGATVIDPIKGFYNC 527

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPH--LPSSKTT----------GVLPE 953
             +  LDF SLYPSII  +N+C++T+ R  D  L P   L  S T+          G+LPE
Sbjct: 528  PVATLDFASLYPSIIIAHNLCYSTLVRPADARLYPEDALDRSPTSDVFVKKEVFPGILPE 587

Query: 954  LLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            +L++L+  R+  +  MK    + L+ + L+ +Q ALK++ANS+YG  G    +     ++
Sbjct: 588  VLQDLLAARKHARAMMKDVPMNSLEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEIS 647

Query: 1012 ELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGK 1063
              +T  GR+++  T +LV+       V+YGDTDS+M+    D+       +  A     +
Sbjct: 648  ASVTAYGRQMIDRTKNLVEELYPGARVLYGDTDSVMVKCVTDEKSSDKERLQAAMDFGIE 707

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              ++V+  + K ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD 
Sbjct: 708  AAEKVSSNFLKPIKLEFEKVYFPYLLMNKKRYAGLLWTSTDR--FDKLDAKGIETVRRDN 765

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   +    L++IL  RS E  VE +  ++     D+   ++ +   VITK  +K  +
Sbjct: 766  CPLVARMVSGVLNRILIHRSVESAVEFVKGTI----SDLLLNRLDISNLVITKAFSKAED 821

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y  A  Q H+ +  R++Q   ++  + GD V Y+I         ++ G     R  D +
Sbjct: 822  EYAGA--QAHIALVERMRQRDPASAPTIGDRVAYVII-------KAAKGAKAYERSEDPI 872

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRL 1268
               D    ID  YY   Q+ P + R+
Sbjct: 873  YVLDNNIPIDTQYYLEHQLAPPIMRV 898


>gi|324120734|dbj|BAJ78758.1| DNA polymerase delta catalytic subunit [Gynaikothrips ficorum]
          Length = 1091

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 304/682 (44%), Gaps = 96/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  V+ C++ E  +  +    + ++D D+  G+NI  FD   L++RA+  +V    +  
Sbjct: 351  VGCQVISCKT-EAEMFTKWSDFVREVDPDIFTGYNIGNFDFPYLINRAEHLKVKP--FPF 407

Query: 689  IGRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  +   + K    F    G          GR+  D  L      +  SY+L  ++
Sbjct: 408  LGRIKNIQ--SVVKESQFFSKQMGRRENKSINTEGRVAFDLLLILVRDYKLRSYTLNSVS 465

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q  T ++   L  Y   DA+L + L+  L  +    ++  
Sbjct: 466  YHFLQEQKEDVH-HSVITDLQNGTPQTRRRLAVYCLKDAYLPIRLLEKLMCIINYMEMAR 524

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K +I+P   TY           + G +D+   
Sbjct: 525  VTGVTLASLLTRGQQIKVMSQLLRKAREKDFIMP---TY----------QSTGGDDQ--- 568

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EPK+G Y   I  LDF+SLYPSI+  +
Sbjct: 569  --------------------------YEGATVIEPKRGYYADPISTLDFSSLYPSIMMAH 602

Query: 925  NICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT+                 ++P       PS +  G+LPE+L +L+  R+  K+ 
Sbjct: 603  NLCYTTLLLGNAKERLGLSADQYSKTPANNFFVKPSVR-KGLLPEILDDLLSARKKAKSD 661

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K      K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 662  LKNEKDPFKQRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKT 721

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+    +E        VIYGDTDS+M+  G+  + +A  +  +  + V  K+ K ++++
Sbjct: 722  NVEEKYRIENGYKHDAVVIYGDTDSVMVKFGVKTLEEAMELGREAAEFVTSKFIKPIKLE 781

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD S L   + + CL ++L
Sbjct: 782  FEKVYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNSPLVANMMNTCLQKLL 839

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R+ +D V    +    V  D+   ++ + + VITK LTK       A  Q HV++A +
Sbjct: 840  IDRNPDDAVAYAKS----VISDLLCNRIDISQLVITKELTKSDY----AAKQAHVELAAK 891

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +K+         GD VP+++         +S G     +  D +   +    ID  YY  
Sbjct: 892  MKKRDPGNAPKLGDRVPFVLI-------SASKGTPAYMKAEDPIYVLENSIPIDFSYYLE 944

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E +
Sbjct: 945  NQLSKPLLRIFTPILGDKAESI 966


>gi|452823008|gb|EME30022.1| DNA polymerase delta subunit 1 [Galdieria sulphuraria]
          Length = 1070

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 186/669 (27%), Positives = 311/669 (46%), Gaps = 83/669 (12%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AG+ VL  +S E  LL   +  L   D D+L G+NI  FDL  LL+RA V  + S  +  
Sbjct: 329  AGAKVLSFDS-EAELLEAWVSFLCATDPDILTGYNIVNFDLPYLLNRASVLHLSS--FPF 385

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQ 744
            +GRL    ++M   R   + FG+  S      + GR++ D   +  RD  LR  SYSL  
Sbjct: 386  LGRLMGVMTKMHDTRLSSSAFGTHESKAF--TMNGRIIVDMLQILVRDYKLR--SYSLNS 441

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLESLME-LIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            ++   L + +++V    + ++F   E+    L  Y   DA+L   LM  L  L    +L 
Sbjct: 442  VSFEFLGEQKEDVHHSIITELFHGNENTRRRLAVYCLKDAYLPHRLMEKLMSLTNYMELA 501

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L      +V  LL      +  ++PD                        
Sbjct: 502  RVAGIPLAWLLSRGHMIKVVSLLHRKAFPESLLIPDL----------------------- 538

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                        +TSHN   + +   +Y G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 539  -----------KNTSHNSSEEAE---SYEGATVIEPKRGFYKMPIATLDFASLYPSIMMA 584

Query: 924  YNICFTTVER--------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            +NIC++T+ R              SP G     PS K  GVL ++L++L+  R++ K  +
Sbjct: 585  HNICYSTLVRKDRVKYLKPEDYIKSPSGDCYVRPSVK-KGVLSKILEDLLSARKVAKREL 643

Query: 970  KTASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            + A+   ++  L+ +Q ALK++AN++YG  G S  +     ++  IT  GR ++ +T  L
Sbjct: 644  EQATDPFLRSVLNGRQLALKISANAVYGFTGASRGKLPCTEISASITAFGRRMIETTKSL 703

Query: 1029 VQNNL-NLEVIYGDTDSIMIHSGID-DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKR 1085
            V++   +  VIYGDTDS+M+    D  + ++ ++  +    +++ + K ++++ +  Y  
Sbjct: 704  VESKFPSSVVIYGDTDSVMVKFRDDLTLEESMSLGQQAADIISQSFPKPIKLEFEKCYYP 763

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
             LL++KK+YA   + +     Y+ ++ KG++ VRRD   L   V    L ++L ER  + 
Sbjct: 764  YLLIQKKRYAG--LLWTKTETYDKMDCKGIETVRRDNCKLVANVVSKVLEKLLVERDVQG 821

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
             ++ +  ++     D+   +V +   VI+K L+K    Y DA NQ HV +  +L Q    
Sbjct: 822  AIDFVKKTI----SDLLQNKVDISLLVISKELSKAAADY-DA-NQAHVTLYKKLYQRDPG 875

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
            +  S GD +PY+      T  G     A   R  D +   +    +D +YY    +   +
Sbjct: 876  SAPSLGDRIPYV------TIKGRKDQPAHE-RAEDPIYVLEHNLPLDTEYYLKNMLRKPL 928

Query: 1266 SRLCASIEG 1274
             R+   I G
Sbjct: 929  ERIFEPIIG 937


>gi|239607450|gb|EEQ84437.1| DNA polymerase delta subunit [Ajellomyces dermatitidis ER-3]
          Length = 1106

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 205/823 (24%), Positives = 353/823 (42%), Gaps = 145/823 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +R+S C+ E T+   +D+    +    A++ P+ 
Sbjct: 251  FMIDTGISGMSWVEAPASKYHMLPMNERLSNCQIEATIHY-RDLIAHPNDGEWAKMAPLR 309

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +                           
Sbjct: 310  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRY--------------------------- 342

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
              G   P   N    D  S   +  L    +E  +L      L ++D DV++G+NI+ FD
Sbjct: 343  --GESKPFVRNVFVLDTCSLIVNTQLFEFDAEEKMLMAWRDFLEEVDPDVIIGYNIANFD 400

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +      WS++  +        R G   F S   G      + I+GR+ 
Sbjct: 401  FPYLLKRAEHLKCSGFHFWSRLKHIAS------RVGDARFSSKQIGNRESKSTNISGRIQ 454

Query: 725  CDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y   
Sbjct: 455  LDLLQLIQRDYQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTPDSRRRLAVYCLK 512

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++L  L      ++ ++P 
Sbjct: 513  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLSQLFRKALEQQLVIP- 569

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                            N  N+++            Y G  V+EP
Sbjct: 570  --------------------------------NLRNESTSEQ---------YEGATVIEP 588

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHL 942
             +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G     
Sbjct: 589  IRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIDTHQMKEGEDYIVTPNG--DRF 646

Query: 943  PSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
             +SK   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  G 
Sbjct: 647  CTSKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLTGA 706

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGID 1052
            +  R    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  G+ 
Sbjct: 707  TVGRLPCLPIASSTTSYGRQMIEKTKEEVEAKFTIANGYSHDAKVVYGDTDSVMVKFGMQ 766

Query: 1053 DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D+A+A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++
Sbjct: 767  DLAEAMKLGREAADFVSAKFIKPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KYDKMD 824

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KG++ VRRD   + + V +  L +IL +R        + +++     D+   ++ + K 
Sbjct: 825  TKGIETVRRDNCRMVQTVIETVLRKILIDRDVGAAQSYVKDTI----SDLLQNKIDMSKL 880

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S      
Sbjct: 881  VITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAGGSKNYE-- 934

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  -----KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 972


>gi|353237606|emb|CCA69575.1| probable DNA polymerase delta catalytic subunit [Piriformospora
            indica DSM 11827]
          Length = 1069

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 177/660 (26%), Positives = 299/660 (45%), Gaps = 97/660 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            ++D D+++G+NI+ FD   L+ RA+  +V    +  +GRL  S   K     T F S   
Sbjct: 358  RVDPDIIIGYNIANFDFPYLMDRAEALKVKE--FPYLGRLTHS---KTYVRTTHFSSKAY 412

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-- 767
            G      + + GRL  D     +   +  SYSL  +    L + +++V  H V+   Q  
Sbjct: 413  GTRDSKETVLEGRLQLDIIQVMQRDYKLRSYSLNSVCAHFLGEQKEDVH-HSVITDLQNG 471

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
            T ES   L  Y   DA+L   LM  L       ++  ++G  +   L   ++ +V   L 
Sbjct: 472  TPESRRRLAVYCLKDAYLPQRLMDKLMCFINYTEMARVTGIPFNYLLSRGQSIKVVSQLY 531

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
                ++ Y++P                + G ED+                          
Sbjct: 532  RRANSEGYLIP-------------ATKSEGGEDQ-------------------------- 552

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLV---- 939
               Y G  V+EP +G Y K I  LDF+SLYPSI+  +N+C+TT+         GL+    
Sbjct: 553  ---YEGATVIEPSRGFYKKPIATLDFSSLYPSIMMAHNLCYTTLLNKDTIDRLGLIRDVD 609

Query: 940  ----PHLPSSKTT----GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
                P+     TT    G+LP +L++L+  R+  K  +K  +   K   LD +Q ALK++
Sbjct: 610  YIQTPNKDFFATTKRRKGLLPTVLEDLIAARKRAKADLKKETDPFKRAVLDGRQLALKIS 669

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDT 1042
            ANS+YG  G +  +     ++  +T  GR+++  T  +V++  ++         VIYGDT
Sbjct: 670  ANSVYGFTGATIGKLPCLEISSSVTAYGRQMIERTKTVVESQFSIANGRKWDARVIYGDT 729

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKK--YKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DS+M+  G +D+  A     +    V +    K + ++ + +Y   LL+ KK+YA   + 
Sbjct: 730  DSVMVEFGCEDLETAMECGREAAAFVTETEFVKPINLEFEKVYFPYLLISKKRYAG--LY 787

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
            +     Y+ ++ KG++ VRRD   L   V + CL ++L ++     VE   + + ++  D
Sbjct: 788  WTKPEKYDKMDAKGIETVRRDNCRLVSTVIETCLQKLLIDKD----VEGAESYVKRMISD 843

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +   ++ + + VITK L+K  E Y D K Q H ++A R++     +  + GD VPY+I  
Sbjct: 844  LLQNKIDMSQLVITKALSK--ETY-DGK-QAHDELAKRMRARDAGSAPALGDRVPYVII- 898

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             +G  S ++   A+     D L   +    ID  YY   Q+   + R+   I G    RL
Sbjct: 899  -KGAKSAAAYEKAE-----DPLYVLENNIPIDTKYYLDNQLAKPLERIFEPILGDKVSRL 952


>gi|327352438|gb|EGE81295.1| DNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1106

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 205/823 (24%), Positives = 353/823 (42%), Gaps = 145/823 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +R+S C+ E T+   +D+    +    A++ P+ 
Sbjct: 251  FMIDTGISGMSWVEAPASKYHMLPMNERLSNCQIEATIHY-RDLIAHPNDGEWAKMAPLR 309

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +                           
Sbjct: 310  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRY--------------------------- 342

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
              G   P   N    D  S   +  L    +E  +L      L ++D DV++G+NI+ FD
Sbjct: 343  --GESKPFVRNVFVLDTCSLIVNTQLFEFDAEEKMLMAWRDFLEEVDPDVIIGYNIANFD 400

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +      WS++  +        R G   F S   G      + I+GR+ 
Sbjct: 401  FPYLLKRAEHLKCSGFHFWSRLKHIAS------RVGDARFSSKQIGNRESKSTNISGRIQ 454

Query: 725  CDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y   
Sbjct: 455  LDLLQLIQRDYQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTPDSRRRLAVYCLK 512

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++L  L      ++ ++P 
Sbjct: 513  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLSQLFRKALEQQLVIP- 569

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                            N  N+++            Y G  V+EP
Sbjct: 570  --------------------------------NLRNESTSEQ---------YEGATVIEP 588

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHL 942
             +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G     
Sbjct: 589  IRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIDTHQMKEGEDYIVTPNG--DRF 646

Query: 943  PSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
             +SK   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  G 
Sbjct: 647  CTSKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLTGA 706

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGID 1052
            +  R    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  G+ 
Sbjct: 707  TVGRLPCLPIASSTTSYGRQMIEKTKEEVEAKFTIANGYSHDAKVVYGDTDSVMVKFGMQ 766

Query: 1053 DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D+A+A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++
Sbjct: 767  DLAEAMKLGREAADFVSAKFIKPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KYDKMD 824

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KG++ VRRD   + + V +  L +IL +R        + +++     D+   ++ + K 
Sbjct: 825  TKGIETVRRDNCRMVQTVIETVLRKILIDRDVGAAQSYVKDTI----SDLLQNKIDMSKL 880

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S      
Sbjct: 881  VITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAGGSKNYE-- 934

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  -----KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 972


>gi|403413674|emb|CCM00374.1| predicted protein [Fibroporia radiculosa]
          Length = 1060

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 184/691 (26%), Positives = 310/691 (44%), Gaps = 98/691 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +  E  +L+     + ++D DV++G+N S FDL  L+ RA+   + ++M   +
Sbjct: 319  GSQVLSFDD-EGKMLDSWRAFVEEVDPDVVIGYNSSNFDLPYLMDRAKA--IKANMLPYL 375

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            GR+   +++  +       FG   S    + + GRL  D     +   +  SY+L  +  
Sbjct: 376  GRMNGVKAQTKETHFSSKAFGQRDSKE--TALDGRLQIDVLQYMQREHKLRSYTLNSVCA 433

Query: 748  TQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L + +++V  H V+   Q    ES   L  Y   DA+L   L+  L       ++  +
Sbjct: 434  QFLGEQKEDVH-HSVITDLQNGGPESRRRLAVYCLKDAYLPQRLIDKLMCFINYTEMARV 492

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G  +   L   ++ +V   L        YI+P                           
Sbjct: 493  TGVPFNYLLSRGQSIKVLSQLYRKANDDGYIIP--------------------------S 526

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
            L  E ++                  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N
Sbjct: 527  LKGEGSD----------------EQYEGATVIEPMKGYYDVPIATLDFSSLYPSIMMAHN 570

Query: 926  ICFTTV--ERSPDGL----------VPH----LPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            +C+TT+  ++  D L           P+    + SSK  G+LP +L++L+  R+  K  +
Sbjct: 571  LCYTTLVDKKVIDRLHLVKDVDYIQTPNNDFFVTSSKRKGLLPTILEDLIGARKRAKVDL 630

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +   K   LD +Q ALK++ANS+YG  G +  +    P++  +T  GR+++  T   
Sbjct: 631  KKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSVTAYGRQMIEKTKQE 690

Query: 1029 VQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+        ++ +  VIYGDTDS+M+  G  D+    A+  +    V  K+ K ++++ 
Sbjct: 691  VEAEYCVANGHSHDAHVIYGDTDSVMVKFGPTDLPTVMALGAQAADFVTAKFIKPIKLEF 750

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V + CL ++L 
Sbjct: 751  EKVYFPYLLISKKRYAGLYWTRPD--KYDKMDTKGIETVRRDNCRLVSTVIETCLHKMLI 808

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R     V+       ++  D+   +V + + VITK L K       A  Q HV++A R+
Sbjct: 809  DRD----VKGAEEYTKQIIADLLQNKVDMSQLVITKALAKADY----AAKQAHVELAERM 860

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            KQ    +  + GD V Y+I   +G       G A   +  D +   +    ID  YY   
Sbjct: 861  KQRDAGSAPALGDRVAYVII--KGVK-----GAAAYEKSEDPIYVLENNIPIDTKYYLEN 913

Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
            Q+   + R+   I G   E+ A  L  D ++
Sbjct: 914  QLSNPLMRIFEPILG---EKAASLLSGDHTR 941


>gi|305662963|ref|YP_003859251.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
 gi|304377532|gb|ADM27371.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
          Length = 801

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 175/663 (26%), Positives = 302/663 (45%), Gaps = 135/663 (20%)

Query: 637  ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
            +  +R L+   +  + K D D++VG+N + FD   L+ R++   +      K+   +R  
Sbjct: 221  DKDDRNLIKSFIDYVLKYDPDIIVGYNSNRFDWPYLIERSRFLGI------KLDVSRRR- 273

Query: 697  MPKLRKGRTIFGSGASPGIMSCIA--GRLLCDTFLCSRDL-------LREVSYSLTQLAK 747
                       G   SP +   I+  GRL  D +  + ++       L EV+  L  + K
Sbjct: 274  -----------GVEPSPSVHGHISVPGRLNVDLYDFAEEMSEIKIKSLDEVAEYLGVMKK 322

Query: 748  TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            ++    R  V  +++ + +   +    L+ Y   DA  +  +     +LP   QL++++G
Sbjct: 323  SE----RTNVPWYEIYRYWDDEKLRPILLRYARDDAISTYGIA--EKILPFAIQLSSVTG 376

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                +    +   R+E+ L+     +  +VP++                   +R  E   
Sbjct: 377  IPLDQVGTASVGFRLEWFLIRIAYMRDELVPNRI------------------EREYE--- 415

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                                   Y G +VLEPKKG+++  I +LDF+++YPSI+ +YNI 
Sbjct: 416  ----------------------PYRGAIVLEPKKGVHED-IAVLDFSAMYPSIMMKYNI- 451

Query: 928  FTTVERSPDGLV--PHLPSSKTTGVLPEL---------------LKNLVQRRRMVKTWMK 970
                   PD LV  P +         PE                L+ LV+ R++V+  +K
Sbjct: 452  ------GPDTLVKDPEICKEDKCFEAPETGYKFVKEPSAFFKIALEILVKARKIVREQLK 505

Query: 971  TAS--GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
              S   ++ + LD +Q+ALK+ AN+ YG +G+  +R+Y +  AE +T  GRE +R  +D+
Sbjct: 506  KYSVDSIEYRVLDARQRALKILANACYGYMGWVGARWYCRECAEAVTDFGRETIRKAIDI 565

Query: 1029 VQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLL 1088
             + NL L VIYGDTDS+ +    + I K      K +++V      LEI +D +Y+R+  
Sbjct: 566  AR-NLGLAVIYGDTDSLFVKYDKEKIDKLI----KTVEDV----LGLEIKIDKIYRRVFF 616

Query: 1089 LK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
             + KK+Y  +     DG     I+  G + VR DW+ ++KE+ +     +L     +  V
Sbjct: 617  TEAKKRYIGLT---DDGR----IDVVGFEAVRGDWAEIAKELQEKTADIVLKTMDPKKAV 669

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E + N + K+++ +  G + ++ ++I KT+TKP + Y    + PHV  A  L+++GY   
Sbjct: 670  EFVRNEIEKLRKGVSEGSIPIDGFIIWKTITKPLKEY--EVDAPHVVAAKYLEKAGYR-- 725

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD + Y+I    G        I+ RAR    +   D    IDIDYY   QI P V R
Sbjct: 726  VEVGDKIGYVIIRGSGK-------ISDRARPYINVDVRD----IDIDYYIEHQIIPAVIR 774

Query: 1268 LCA 1270
            +  
Sbjct: 775  ILG 777


>gi|315042333|ref|XP_003170543.1| DNA polymerase delta catalytic subunit [Arthroderma gypseum CBS
            118893]
 gi|311345577|gb|EFR04780.1| DNA polymerase delta catalytic subunit [Arthroderma gypseum CBS
            118893]
          Length = 1112

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 205/818 (25%), Positives = 362/818 (44%), Gaps = 134/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K++  P  +  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 256  FMIDTGISGMSWVEVPAAKYTVLPPGKCHSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 313

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 314  -----------------RILSFDIECAGRKGIFPDPNIDPVIQIANIVTRYGESKPFVRN 356

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  E  E+ L+  R  +E  ++D DV++G+NI+ FD   
Sbjct: 357  VFVMD------TCSSIVNTQVLEFEQEEKMLMAWRDFVE--RVDPDVIIGYNIANFDFPY 408

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    W+++  +        +  +T F S   G      +   GR+  D 
Sbjct: 409  LLERAEHLNCLKFPYWTRLKGVPS------QATKTSFASKQMGKRDSKATNTNGRIQLDL 462

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 463  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 520

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 521  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 575

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 576  ------------------------------LKNDENSNQQ--------YEGATVIEPVRD 597

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PHLPSSKTT-- 948
             Y   I  LDF SLYPSIIQ +N+C+TT           +++  D +V P+     TT  
Sbjct: 598  YYAVPIATLDFASLYPSIIQAHNLCYTTLLNKRTVEKLGLKKGEDYIVTPNDDMFCTTKI 657

Query: 949  --GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 658  RKGLLSQILEELLTARKRAKRELAIEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 717

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
               P+A   T  GR+++  T + V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 718  PCLPIASSTTSYGRQMIEKTKEEVEARYTISNGYAHDAKVIYGDTDSVMVKFGTADLAEA 777

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +   + +   Y+ ++ KG++
Sbjct: 778  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAGLF--WTNPTKYDKMDTKGIE 835

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL +R+       + N    +  D+   +V + K VITK 
Sbjct: 836  TVRRDNCLLVQTVIETVLNKILIDRNVNGAETYVKN----IISDLLQNKVDMSKLVITKA 891

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            LTK  E Y     Q HV++  R+++    +  + GD V Y+I       SG + G     
Sbjct: 892  LTK--EKY--QGKQAHVELVERMRKRDAGSAPTLGDRVAYVIV------SGVT-GAKNYE 940

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 941  KAEDPIYVLENNIPIDTRYYLENQLAKPLTRIFEPILG 978


>gi|150400109|ref|YP_001323876.1| DNA polymerase Pol2 [Methanococcus vannielii SB]
 gi|150012812|gb|ABR55264.1| DNA polymerase Pol2 [Methanococcus vannielii SB]
          Length = 810

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 182/657 (27%), Positives = 303/657 (46%), Gaps = 107/657 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ R++  L   D  V+  +N   FD   L  RA+       +  K+G  K  E  K
Sbjct: 228  EKELIKRIIEVLSSYD--VIYTYNGDNFDFPYLKGRAETF----GLDLKLG--KNGEKIK 279

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG    G  +     S I GR+  D +  +R LL    Y L  + +      + +VG 
Sbjct: 280  ITKG----GINSK----SYIPGRVHIDLYPIARRLLSIARYRLENVTEELFGIKKVDVGH 331

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             ++ KM+ + +    L+EY   DA+ + ++      LPL    + +         + + +
Sbjct: 332  ENIPKMWDSCDET--LVEYSFQDAYYTRKIGEQF--LPLEVMFSRVVNQSLFDINRMSSS 387

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VEYLLL        + P+K                                     S 
Sbjct: 388  QMVEYLLLKNSYKLGVVSPNK------------------------------------PSG 411

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------R 933
            N+++K  R  +Y GG V EP KG+++  I+ +DF SLYPSII  +NI   T+       +
Sbjct: 412  NEYQKRIRS-SYEGGYVKEPLKGIHED-IISMDFLSLYPSIIMSHNISPETINCDCCNFK 469

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW-----MKTASGLKIQQLDIQQQALK 988
              + ++ H    K TG++P+ L +L+ RR+ +K       +K     + + LD +Q+++K
Sbjct: 470  EAEKVLGHTFCKKQTGIVPKTLMDLINRRKKIKEILKEKALKNEFDEEYKILDYEQKSIK 529

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM-- 1046
            + ANS YG L F  +R+Y+K  AE+ T  GR  ++ T++  + N    VIY DTD     
Sbjct: 530  VLANSHYGYLAFPMARWYSKDCAEVTTHLGRSYIQKTIEEAE-NFGFNVIYADTDGFYSK 588

Query: 1047 --IHSGIDDIAKAKAI--AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
                +GI  I+K K +    + ++ +N K    +E++ +G +KR + + KKKYA +    
Sbjct: 589  WNSKNGI--ISKEKLLEKTKEFLKTINDKLPGEMELEFEGHFKRGIFVTKKKYALIDEN- 645

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
                  E +  KGL++VRRDWS +SK+     L ++L   +    ++S  N + K  +++
Sbjct: 646  ------EKVTIKGLEVVRRDWSNISKKTQKNVLDELLKHGN----IDSAKNIIQKTIDEL 695

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            + G V  E  +I   LTK  E Y      PHV+VA ++ ++G     + GD + YII   
Sbjct: 696  KKGNVDKEDLLIHTQLTKRIEDYKTT--APHVEVAKKIAKAG--NRINVGDVISYIIT-- 749

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
             G +S     I++RA   +  K        D +YY   QI P V R+  ++  +  E
Sbjct: 750  DGKNS-----ISERAELIENAKS------YDTNYYIENQILPPVIRIMEALSISKDE 795


>gi|296234423|ref|XP_002762441.1| PREDICTED: DNA polymerase delta catalytic subunit [Callithrix
            jacchus]
          Length = 1107

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 177/659 (26%), Positives = 302/659 (45%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPFLISRAQTLKV--HTFPFLGRVAGLRSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q    G+    V     ED           
Sbjct: 553  VKVV---------------------SQLLRQAKQEGLLMPVVRSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R        
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 631

Query: 934  --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                    +P G    + +S   G+LP++L+NL+  R+  K  + +    L+ Q LD +Q
Sbjct: 632  LTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELARETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|255731752|ref|XP_002550800.1| DNA polymerase delta catalytic subunit [Candida tropicalis MYA-3404]
 gi|240131809|gb|EER31368.1| DNA polymerase delta catalytic subunit [Candida tropicalis MYA-3404]
          Length = 1079

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 201/820 (24%), Positives = 358/820 (43%), Gaps = 133/820 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
             ++  K+ G SW+++ K       +++S C+ E ++D  +D+    S     ++ P+ + 
Sbjct: 229  LMIDCKITGMSWITLPKTKYKLVTKKISTCQIECSIDY-RDLISHPSEGEWLQMAPLRIL 287

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            + ++     K +F + +    I  A+VV             S   KP + + FTV     
Sbjct: 288  SFDIECAGRKGIFPEAKHDPVIQIANVV-----------QRSGESKPFIRNVFTV----- 331

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G   P+             GS +   E  E  L++     + ++D DV++G+N + FD+ 
Sbjct: 332  GSCSPI------------IGSQIFSHEKEEDMLMHWKEF-ICEVDPDVIIGYNTANFDIP 378

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
             +L RA+  ++P   +   GRLK     K     ++F S   G     +  I GR+  D 
Sbjct: 379  YVLRRAEALKLPK--FPFFGRLKSV---KQEIKDSVFSSRAYGTRENKVVNIDGRMQLDL 433

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWL 785
                    +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L
Sbjct: 434  LQFINREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGNSETRRRLAVYCLKDAFL 492

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
             + L+  L  L    ++  ++G  +   L   +  +V   L      +  ++P+      
Sbjct: 493  PLRLLDKLMCLVNYTEMARVTGVPFSYLLSRGQQIKVISQLFRKCLQEDVVIPN------ 546

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                   RS          E TNE+                    Y G  V+EP++G YD
Sbjct: 547  ------LRS----------EGTNEE--------------------YEGATVIEPERGYYD 570

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG 949
              I  LDF+SLYPSI+  +N+C+TT+                 ++P+G    + SS   G
Sbjct: 571  VPIATLDFSSLYPSIMMAHNLCYTTLLNKKSIQAYGLTEDDYTKTPNGDY-FVKSSLRQG 629

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +    
Sbjct: 630  ILPTILNELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATIGKLPCL 689

Query: 1009 PLAELITQQGREILRSTVDLVQNN--------LNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
             ++  +T  GRE++  T ++VQ+          + +VIYGDTDS+M+  G +D+     +
Sbjct: 690  AISSSVTAFGREMIEKTKNVVQDYYSKKNGHPYDAKVIYGDTDSVMVCFGYEDLETCMKL 749

Query: 1061 AGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
              +    V+ K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VR
Sbjct: 750  GEEAANYVSTKFKDPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVR 807

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L + V    L  IL ER        +  ++     D+   +V L + VITK  +K
Sbjct: 808  RDNCRLVQNVVTKVLEFILEERDVGKAERFVKQTIA----DLLQNRVDLSQLVITKAYSK 863

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
                +  +  Q HV++A R+K     +    GD V Y+I       +GS        +  
Sbjct: 864  ----HDYSAKQAHVELAERMKARDPGSAPQLGDRVAYVI-----IKTGSD---KNYEKSE 911

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
            D L   +    ID+ YY  QQ+   + R+   I G +  R
Sbjct: 912  DPLYVLENSLPIDVKYYLEQQLTKPLERIFNPILGDAKTR 951


>gi|366990559|ref|XP_003675047.1| hypothetical protein NCAS_0B05920 [Naumovozyma castellii CBS 4309]
 gi|342300911|emb|CCC68676.1| hypothetical protein NCAS_0B05920 [Naumovozyma castellii CBS 4309]
          Length = 1099

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 206/806 (25%), Positives = 358/806 (44%), Gaps = 139/806 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K++  P  +++S C+ E+T++  KD+    +    + + P+ 
Sbjct: 260  LMVDCGIVGMSWITLPKGKYTLIPDNKKLSTCQLELTINY-KDLVAHPAEGDWSHMAPLR 318

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + ++   I  A+VV    AK           KP + + FTV   
Sbjct: 319  ILSFDIECAGRIGVFPEPEEDPVIQIANVVSVAGAK-----------KPFIRNVFTV--- 364

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+             GS V   +  E  L +     L + D DV++G+N + FD
Sbjct: 365  --NSCSPI------------TGSQVFAHDKEEDMLRHWRQFIL-EADPDVIIGYNTTNFD 409

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            L  L++RA+  +V    +   GRLK  + E+         +G+  S  I   I GRL  D
Sbjct: 410  LPYLINRARALKVEE--FPFFGRLKTVKQEIKDTIFSSKAYGTRESKNI--NIDGRLQLD 465

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                ++   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 466  LLQFAQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIITDLQNGDSETRRRLAVYCLKDAY 524

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L+  L  L    ++  ++G  +   L   +  +V   L         ++P+     
Sbjct: 525  LPLRLLEKLMGLVNYTEMARVTGVPFSYLLSRGQQIKVVSQLFRKCIQIDTVIPN----- 579

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                M+ Q S+                                   Y G  V+EP +G Y
Sbjct: 580  ----MSSQASDE---------------------------------QYEGATVIEPIRGYY 602

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G   +  +SK 
Sbjct: 603  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLTKDEDYVITPNG--DYFVTSKI 660

Query: 948  -TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+LP +L  L+  R+  K  +K      K   L+ +Q ALK++ANS+YG  G +  + 
Sbjct: 661  RRGILPIILDELINARKRAKKDLKNEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKL 720

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKA 1057
                ++  +T  GRE++  T + VQ+          +  V+YGDTDS+M+  G +D+ +A
Sbjct: 721  PCLAISSSVTSFGREMIMLTKNAVQDKYSKANGYENDAIVVYGDTDSVMVKFGTNDLKEA 780

Query: 1058 KAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
             A+  +    V+  +K  + ++ +  Y   LL+ KK+YA +     D   Y+ +++KGL 
Sbjct: 781  MALGTEAAAYVSTLFKNPINLEFEKAYFPYLLINKKRYAGLYWTNPD--KYDKLDQKGLA 838

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD   L   V +  L +IL ER+    +E +  ++    +D+   +V + K +I+KT
Sbjct: 839  SVRRDSCSLVSIVMNKVLKKILIERNVNGALEFVKKTI----DDILHNRVDISKLIISKT 894

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            L  P    P    QPH  ++ R+K+     G + GD V Y+I       +G +  +  RA
Sbjct: 895  LA-PNYVNP----QPHAVLSERMKKRD-GMGPNVGDRVDYVI-------TGGNDKLYNRA 941

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIH 1262
              P  L   +    ID  YY + Q+ 
Sbjct: 942  EDP--LYVLEHNIQIDSKYYLTNQLQ 965


>gi|324120736|dbj|BAJ78759.1| DNA polymerase delta catalytic subunit [Cryptotympana facialis]
          Length = 1102

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 176/672 (26%), Positives = 307/672 (45%), Gaps = 95/672 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  +L +    + ++D D+L G+NI+ FD   L++RA+   +    ++ +GR+K     
Sbjct: 373  NEADMLEKWAAFIREVDPDILTGYNINNFDFPYLINRAK--HLNCKNFTFLGRIKNIRSV 430

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
              ++       G          GR+  D  L    LLR+    SY+L  ++   L + ++
Sbjct: 431  IRQQVLQSKQMGKRENKHVNFEGRVPFDLLLV---LLRDYKLRSYTLNSVSYHFLQEQKE 487

Query: 756  EVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L  +    +++ ++G      
Sbjct: 488  DVH-HTIITDLQNGDDQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMSRVTGVSLLSL 546

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   LL   + K Y++P                 +GV               
Sbjct: 547  LTRGQQIKVVSQLLRKAKEKNYVMP----------------TYGV--------------- 575

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                       G +   Y G  V+EP KG Y   I  LDF+SLYPSI+  +N+C+TT+  
Sbjct: 576  -----------GSQEDQYEGATVIEPIKGYYKVPIATLDFSSLYPSIMIAHNLCYTTLLQ 624

Query: 932  ----ER---SPDGL--VP----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
                ER   +PD     P     + SS   G+LPE+L++L+  R+  K  +K  +   K 
Sbjct: 625  GNARERLALTPDQFSRTPANYFFVKSSLRKGLLPEILEDLLNARKRAKLDLKNETDPFKK 684

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ +  +  
Sbjct: 685  KVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTSYGRTMIEQTKQEVEQHYCIAN 744

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                   V+YGDTDS+M+  G+  + +A  +  +  + V  K+ K ++++ + +Y   LL
Sbjct: 745  GYQHDAVVVYGDTDSVMVKFGVTTLEEAMELGREAAEVVTTKFIKPIKLEFEKVYFPYLL 804

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +     D   Y+ ++ KGL+ VRRD S L   + + CL ++L E++ +D VE
Sbjct: 805  ISKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNSPLVANMMNTCLQKLLIEQNPDDAVE 862

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
                   +V  D+   ++ + + VITK L K       A  Q HV++A ++K+    T  
Sbjct: 863  YAK----EVISDLLCNRIDISQLVITKELAKSDY----AAKQAHVELANKMKKRDPGTAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD VPY+I         +S G     +  D +   +    ID +YY   Q+   + R+
Sbjct: 915  KLGDRVPYVII-------AASKGTPAYQKAEDPIYVLENNIPIDANYYLENQLSKPLVRI 967

Query: 1269 CASIEGTSPERL 1280
             + I G   E +
Sbjct: 968  FSPILGDKAESI 979


>gi|325090528|gb|EGC43838.1| DNA polymerase subunit delta large [Ajellomyces capsulatus H88]
          Length = 1111

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 202/825 (24%), Positives = 361/825 (43%), Gaps = 149/825 (18%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +R+S C+ E T+   +D+    +    A++ P+ 
Sbjct: 256  FMIDTGISGMSWVEAPASKYQILPMVERMSNCQIEATIHY-RDLIAHPNDGEWAKMAPLR 314

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +              KP + + F +   
Sbjct: 315  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRYGES-----------KPFIRNVFVL--- 360

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL--NRLMIELYKLDSDVLVGHNISG 666
               G   +  N           + +L  ++ E+ L+     ++E+   D DV++G+NI+ 
Sbjct: 361  ---GTCSLIVN-----------TQLLEFDTEEKMLMAWKNFLVEV---DPDVIIGYNIAN 403

Query: 667  FDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGR 722
            FD   LL RA+  +      WS++  +        R G   F S   G      + I+GR
Sbjct: 404  FDFPYLLKRAEHLKCSGFHFWSRLKHIPS------RVGDARFSSKQIGNRESKSTNISGR 457

Query: 723  LLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYG 779
            +  D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y 
Sbjct: 458  IQLDLLQLVQRDYQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTPDSRRRLAVYC 515

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIV 837
              DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      ++ ++
Sbjct: 516  LKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQQLVI 573

Query: 838  PDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVL 897
            P                                 N  N+++            Y G  V+
Sbjct: 574  P---------------------------------NLRNESTSEQ---------YEGATVI 591

Query: 898  EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVP 940
            EP +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G   
Sbjct: 592  EPIRDFYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIDAHQMKEGEDYIVTPNG--D 649

Query: 941  HLPSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCL 998
               +SK   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  
Sbjct: 650  RFCTSKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLT 709

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSG 1050
            G +  +    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  G
Sbjct: 710  GATVGKLPCLPIASSTTSYGRQMIEKTKEEVEAKYTIANGYSHDAKVVYGDTDSVMVKFG 769

Query: 1051 IDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
            + D+A+A  +  +    V+ K+   ++++ + +Y   LL+ KK+YA +     D   Y+ 
Sbjct: 770  MKDLAEAMKLGQEAADYVSSKFINPIKLEFEKVYFPYLLINKKRYAGLYWTRPDN--YDK 827

Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
            ++ KG++ VRRD   + + V +  L +IL +R  +     + +++     D+   ++ + 
Sbjct: 828  MDTKGIETVRRDNCRMVQTVIETVLRKILIDRDVDGAQSYVKDTI----SDLLQNKIDMS 883

Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
            K VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G      
Sbjct: 884  KLVITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAG------ 933

Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             G     +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 934  -GSKNYEKSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 977


>gi|181620|gb|AAA58439.1| DNA polymerase-delta catalytic-subunit [Homo sapiens]
          Length = 1107

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 177/659 (26%), Positives = 304/659 (46%), Gaps = 109/659 (16%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    S++L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSHTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 924  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975


>gi|157103868|ref|XP_001648163.1| DNA polymerase delta catalytic subunit [Aedes aegypti]
 gi|108869323|gb|EAT33548.1| AAEL014178-PA [Aedes aegypti]
          Length = 984

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 186/687 (27%), Positives = 318/687 (46%), Gaps = 106/687 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  ++ E+ LL++    + +LD D+L G+NI+ FD+  LL+RA   +V +  +  
Sbjct: 244  VGSQVLSYKT-EQELLDKWASFVRELDPDILTGYNINNFDIPYLLNRASHLKVKN--FEY 300

Query: 689  IGRLK--RSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYS 741
            +GR+   RS + +     T+  S   G          GR+  D  F+  RD  LR  SY+
Sbjct: 301  LGRVTNIRSVIKE-----TVIQSKQMGKRENKYVNFEGRVPFDLLFVLLRDYKLR--SYT 353

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +   
Sbjct: 354  LNAVSYHFLQEQKEDVH-HSIITDLQNENEQTRRRLAMYCLKDAYLPLRLLNKLMCVVNY 412

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G      L   +  +V   LL   +   Y++P               S HG  
Sbjct: 413  MEMARVTGVPLSCLLTRGQQIKVMSQLLRKSKVCGYLIP---------------SYHG-- 455

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                              S +D +       Y G  V+EPK+G Y   I  LDF SLYPS
Sbjct: 456  ------------------SGSDEQ-------YEGATVIEPKRGYYADPISTLDFASLYPS 490

Query: 920  IIQEYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            I+  +N+C+TT                + R+P   V  + SS   G+LPE+L++L+  R+
Sbjct: 491  IMMAHNLCYTTLLQPANKEKLHLTDDQITRTPTNNV-FVKSSVRKGILPEILESLLAARK 549

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++
Sbjct: 550  RAKADLKVETDPFKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 609

Query: 1023 RSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T   V+    +E        VIYGDTDS+M++ G+  + ++  +  +  + V+ K+ K
Sbjct: 610  EQTKQEVEQRYTVENGYENDAVVIYGDTDSVMVNFGVKTLERSMELGREAAEFVSHKFVK 669

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + C
Sbjct: 670  PIKLEFEKVYYPYLLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVANLMNSC 727

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L ++L ER+ E  VE    ++     D+   ++ + + VITK L K       A  Q HV
Sbjct: 728  LQKLLIERNPEGAVEFAKQTI----ADLLCNRIDISQLVITKELAKSDY----AAKQAHV 779

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A ++K+    +    GD VPY+I      ++  +    Q+A  P  +   +    ID 
Sbjct: 780  ELANKMKKRDPGSAPKLGDRVPYVI-----INAAKNTPAYQKAEDP--IYVLENCVPIDS 832

Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
             YY   Q+   + R+   I G   E +
Sbjct: 833  KYYLENQLSKPLLRIFEPILGDKAESI 859


>gi|295661753|ref|XP_002791431.1| DNA polymerase delta catalytic subunit [Paracoccidioides sp. 'lutzii'
            Pb01]
 gi|226279988|gb|EEH35554.1| DNA polymerase delta catalytic subunit [Paracoccidioides sp. 'lutzii'
            Pb01]
          Length = 1110

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 207/827 (25%), Positives = 361/827 (43%), Gaps = 153/827 (18%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +RVS C+ E ++   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEAPASKYELLPLTERVSNCQIEASIHY-RDLIAHPNDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +                           
Sbjct: 314  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRY--------------------------- 346

Query: 609  LDGGIFPMGFNKEATDRNSK-AGSNVLCCESSERALL--NRLMIELYKLDSDVLVGHNIS 665
              G   P   N    D  S    + +L  ++ ER L+     ++E+   D DV++G+NI+
Sbjct: 347  --GESKPFVRNVFVLDTCSLIVNTQILEFDTEERMLMAWKEFLVEV---DPDVIIGYNIA 401

Query: 666  GFDLDVLLHRAQ--VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIA 720
             FD   L+ RA+   CR     WS++ ++        R G   F S   G      + I+
Sbjct: 402  NFDFPYLIKRAEHLKCR-EFPFWSRLTQVAS------RVGDARFSSKQIGNRESKSTNIS 454

Query: 721  GRLLCDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIE 777
            GR+  D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  
Sbjct: 455  GRIQLDLLQLVQRDHQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTADSRRRLAV 512

Query: 778  YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKY 835
            Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      ++ 
Sbjct: 513  YCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQQL 570

Query: 836  IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
            ++P+                     RN  E T+E                     Y G  
Sbjct: 571  VIPNL--------------------RN--EATSEQ--------------------YEGAT 588

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGL 938
            V+EP +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G 
Sbjct: 589  VIEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIEAHGMKEGEDYIVTPNG- 647

Query: 939  VPHLPSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYG 996
                 ++K   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG
Sbjct: 648  -DRFCTAKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKVSANSVYG 706

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIH 1048
              G +  +    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+ 
Sbjct: 707  LTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVEAKYTIANGYSNDAQVVYGDTDSVMVK 766

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
             G  D+A+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA   + +     Y
Sbjct: 767  FGTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKY 824

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
            + ++ KG++ VRRD   + + V +  L +IL ER  +     + N++     D+   ++ 
Sbjct: 825  DKMDTKGIETVRRDNCRMVQTVIETVLKKILIERDVDGAQNYVKNTI----SDLLQNKID 880

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + K VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S  
Sbjct: 881  MSKLVITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAGGSKN 936

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                     +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 937  YE-------KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 976


>gi|190344317|gb|EDK35969.2| hypothetical protein PGUG_00067 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1075

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 208/821 (25%), Positives = 362/821 (44%), Gaps = 143/821 (17%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V  K+ G SW+++ K  +  C    + S C+ E +VD  + I   S  + + ++ P+ 
Sbjct: 226  LMVDCKITGMSWITLPKGTYEMCQPHLKSSRCQIECSVDYRQLISHPSEGEWL-KMAPLR 284

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F + Q    I  A+VV  +  +           +P + + FTV   
Sbjct: 285  ILSFDIECSGRKGIFPEAQHDPVIQIANVVSKYGEQ-----------RPFIRNVFTV--- 330

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGF 667
                      N  A    S  GS +L  ++ E+ LL+ R  IE  + D DV++G+N + F
Sbjct: 331  ----------NTCA----SIIGSQILEHKTEEQMLLHWRQFIE--ESDPDVIIGYNTTNF 374

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGS---GASPGIMSCIAGR 722
            DL  LL RA    +    +   GRLK  R E+       ++F S   G     +  I GR
Sbjct: 375  DLPYLLDRANALGLKE--FPYFGRLKSVRQEVKD-----SVFSSRAYGTRENKVVNIDGR 427

Query: 723  LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGE 780
            +  D     +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y  
Sbjct: 428  MQLDLLQFVQREYKLRSYTLNSVSAHFLGEQKEDV-QHTIISDLQNGTRETRRRLAVYCL 486

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVP 838
             DA+L M L+  L  L    ++  ++G  +   L  AR Q+++ +  L      +  ++P
Sbjct: 487  KDAYLPMRLLEKLMCLVNYTEMARVTGVPFSYLL--ARGQQIKVISQLFRKCLQEDVVIP 544

Query: 839  DKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLE 898
            +  +                      E TNE+                    Y G  V+E
Sbjct: 545  NMKS----------------------EGTNEE--------------------YEGATVIE 562

Query: 899  PKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVPH----LP 943
            P +G YD  I  LDF+SLYPSI+  +N+C+TT           + +    L P+    + 
Sbjct: 563  PVRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLSKNSIAAFNLSKDDYTLTPNGDYFVK 622

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
              K  G+LP +L  L+  R+  K  +K  +   +   L+ +Q ALK++ANS+YG  G + 
Sbjct: 623  EHKRKGILPTILHELISARKKAKVDLKNETDPFRKDVLNGRQLALKISANSVYGFTGATI 682

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDI 1054
             +     ++  +T  GR ++  T + VQ+    E        VIYGDTDS+M+  G  DI
Sbjct: 683  GKLPCLAISSSVTAFGRVMIEETKNEVQSRYTTENGYDYDAQVIYGDTDSVMVKFGHQDI 742

Query: 1055 AKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
                 +  +    V++K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ K
Sbjct: 743  ETCMKLGEEAANYVSQKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTK 800

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            G++ VRRD   L + V    L  IL ER+ +     +  ++     D+   +V L + VI
Sbjct: 801  GIETVRRDNCRLVQNVITKVLEYILEERNVDKAERFVKQTIA----DLLQNRVDLSQLVI 856

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK  +K    +  A  Q H+++A R+K+    +  + GD V Y+I     T +       
Sbjct: 857  TKAYSK----HEYAAKQAHIELAERMKKRDPGSAPTLGDRVAYVIINSSSTKN------- 905

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               +  D L   +    ID+ YY   Q+   + R+   I G
Sbjct: 906  -YEKSEDPLFVLENSLPIDVKYYLENQLANPLMRIFEPILG 945


>gi|73535447|pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant
          Length = 774

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 176/646 (27%), Positives = 292/646 (45%), Gaps = 93/646 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+ER ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFAL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    + +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
               ++   ++T E+L  +  Y   DA ++ EL      LP+  QL+ + G +LW  + + 
Sbjct: 291  YAEEITTAWETGENLERVARYSMEDAKVTYEL--GKEFLPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDEKELARRRQ---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                         +Y GG V EP++GL++  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------SYEGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L++ R+ +K  MK T   ++ + LD +Q+A+
Sbjct: 429  KEYDVAPQ--VGHRFCKDFPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG  G++ +R+Y K  AE +T  GRE +  T+  ++     +VIY DTD    
Sbjct: 487  KILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFA 546

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                 D    K  A + ++ +N K    LE++ +G Y+R   + KKKYA +  + K    
Sbjct: 547  TIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYERGFFVTKKKYAVIDEEGK---- 602

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I  +GL++VRRDWS ++KE     L  +L +   E  V  +     +V E +   +V
Sbjct: 603  ---ITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVK----EVTEKLSKYEV 655

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
              EK VI + +T+  + Y      PHV VA RL   G       G  + YI+    G   
Sbjct: 656  PPEKLVIHEQITRDLKDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLKGSGR-- 709

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                 I  RA   DE      K+  D +YY   Q+ P V R+  + 
Sbjct: 710  -----IGDRAIPFDEFDPTKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|324120686|dbj|BAJ78734.1| DNA polymerase delta catalytic subunit [Pedetontus unimaculatus]
          Length = 1035

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 178/679 (26%), Positives = 313/679 (46%), Gaps = 97/679 (14%)

Query: 633  VLCCE----SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            ++ CE    + E  LL R    + + D D++ G+NI+ FD   LL+RAQ   V    +  
Sbjct: 296  IVGCEVLSFTKEAELLKRWADFVREADPDIVTGYNINNFDFPYLLNRAQHLGVKD--FPF 353

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  R+ + +        G   +  I +   GR+L D  L      +  SY+L  ++
Sbjct: 354  LGRIKDIRTVVKETVLQSKQLGRRENKSINT--EGRVLFDLLLVLVREYKLRSYTLNAVS 411

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q   S     L  Y   D++L + L+  L  +    ++  
Sbjct: 412  FHFLQEQKEDVQ-HSIISDLQNGNSQTRRRLAVYCLKDSYLPLRLLDKLMCIINYMEMAR 470

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K +++P   TY                     
Sbjct: 471  VTGVSLPSLLTRGQQIKVVSQLLRKAREKDFVIP---TY--------------------- 506

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            + T  D                    Y G  V+EP++G YD  I  LDF+SLYPSI+  +
Sbjct: 507  QGTGSDEQ------------------YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAH 548

Query: 925  NICFTT---------VERSPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            N+C+TT         ++ +PD  +        + +S   G+LPE+L++L+  R+  K  +
Sbjct: 549  NLCYTTLLQPGWVNKLQLTPDRYIETPAGAMFVKASVRKGLLPEILESLLAARKKAKEDL 608

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  L+ + LD +Q ALK++ANS+YG  G    +     ++  +T  GR+++  T   
Sbjct: 609  KKETDPLRCKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRQMIEFTKQQ 668

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+N   +E        VIYGDTDS+M+  G+  + +A  +  +  + V+ K+ K ++++ 
Sbjct: 669  VENKFTVENGYSHDAKVIYGDTDSVMVRFGVSTVGEAMVLGKEGAEYVSSKFIKPIKLEF 728

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + F     ++ ++ KG++ VRRD       + + CL ++L 
Sbjct: 729  EKVYFPYLLINKKRYAG--LYFTRPEVHDKMDCKGIETVRRDNCPFVANIMNMCLQKLLI 786

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER+    V+ +     +V  D+   +V + + VITK LTK       A  Q HV++A ++
Sbjct: 787  ERNPNGAVDYVK----QVISDLLCNRVDISQLVITKELTKSDY----AAKQAHVELANKM 838

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            ++    T    GD VPY+I       + ++ G    A+  D +   +    ID +YY   
Sbjct: 839  RKRDAGTAPKLGDRVPYVI-------TAAAKGTPAYAKAEDPIFVLENSVPIDAEYYLEN 891

Query: 1260 QIHPVVSRLCASIEGTSPE 1278
            Q+   + R+   I G   E
Sbjct: 892  QLSKPLLRIFEPILGDKAE 910


>gi|324120752|dbj|BAJ78767.1| DNA polymerase delta catalytic subunit [Inocellia japonica]
          Length = 1005

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 173/671 (25%), Positives = 296/671 (44%), Gaps = 97/671 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  LLN     +  +D D++ G+N + FDL  L+ RA   ++    +  +GRL    +P
Sbjct: 274  TESKLLNAWAEFMRDMDPDIVTGYNTNAFDLPYLVERAT--KLKLDRFKYLGRL--LNVP 329

Query: 699  KLRKGRT----IFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
             + K RT    + G   S  +   + GR   D  + +R   +  SY+L   ++  L + +
Sbjct: 330  SVVKDRTTQSKLMGKRQSKYVH--LEGRTEYDMLVVARRTCKLRSYTLNNTSQEILGEQK 387

Query: 755  KEVGPHDVLKMFQTLE-SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            ++V    +  + +  E +   L  Y   DA L + L+ HL+      +L  +SG      
Sbjct: 388  EDVHYSQISGLQEGNEQTRHRLAVYCLKDAVLPLRLLNHLNSFTNDMELARVSGVTITTL 447

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            +      +V   LL   +   Y++P                                   
Sbjct: 448  MTRGEQIKVVTQLLKQGKQAGYLMPV---------------------------------- 473

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--- 930
                    HR  +    Y G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT   
Sbjct: 474  --------HRGAQSDEQYEGATVIEPIRGYYTDPIATLDFSSLYPSIMMAHNLCYTTLLN 525

Query: 931  -------------VERSPDGLVPHLPSSKTTGVLPELLKNLV-QRRRMVKTWMKTASGLK 976
                         + ++P       PS +  G+LP++L+NL+  R+R  K   +    ++
Sbjct: 526  PHNKEKLGLTDDQITKTPMNNYFVKPSIR-RGLLPQILENLLAARKRAKKELAEETDPVR 584

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL- 1035
             + L+ +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+    + 
Sbjct: 585  QKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISGSVTGYGRTMIEYTRQEVEQRYTIV 644

Query: 1036 -------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                   +VIYGDTDS+M+  G+ D+ +   +  +  + V+ K+ K ++++ + +Y   L
Sbjct: 645  NGYEHDAQVIYGDTDSVMVKFGVKDLKRCMDLGKEAAEYVSAKFIKPIKLEFEKVYFPYL 704

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA   + F     Y+ ++ KG++ VRRD   L     ++CL ++L  R  +  V
Sbjct: 705  LINKKRYAG--LYFTKPEKYDKMDCKGIETVRRDNCPLVANTINYCLQKLLIHRDPDGAV 762

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E       +V  D+   +V +   VITK LTK  E Y     Q HV++A +L++    T 
Sbjct: 763  EFTK----QVISDLLCNRVDISNLVITKELTK--EDY--TAKQVHVELAKKLQKRDPGTA 814

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD VPY+IC     +   S G        D +   + +  ID  YY   Q+   + R
Sbjct: 815  PKIGDRVPYVICTGAKNAPTYSKG-------EDPIYALENRIPIDTKYYLENQLSKPLVR 867

Query: 1268 LCASIEGTSPE 1278
            +   I G   E
Sbjct: 868  IFQPILGDKAE 878


>gi|332308985|gb|AEE39463.1| DNA polymerase [Thermococcus celericrescens]
          Length = 775

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 173/648 (26%), Positives = 289/648 (44%), Gaps = 97/648 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLKVIKEKDPDVLITYNGDNFDFAYLKKRCEKFGIKFTL----GR--DGSD 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDR 754
            PK+++    F           + GR+  D +     +LR V   +Y+L  + +      +
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPV---ILRTVNLPTYTLEAVYEAIFGTPK 287

Query: 755  KEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            ++V P ++   ++T E L  +  Y   DA ++ EL       P+  QL+ + G  +    
Sbjct: 288  EKVYPEEITTAWETGEGLERVARYSMEDAKVTFEL--GREFFPMEAQLSRLVGQSFWDVS 345

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            + +    VE+ LL     +  + P+K     E ++ ++R+                    
Sbjct: 346  RSSTGNLVEWFLLRKAYERNELAPNK---PDERELVRRRN-------------------- 382

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
                           +Y GG V EP++GL+D  I+ LDF SLYPSII  +N+   T+ R 
Sbjct: 383  ---------------SYTGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNRE 426

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQ 985
                   +P   V H       G +P LL NL+  R+ +K  MK T   L+ + LD +Q+
Sbjct: 427  GCKEYDEAPQ--VGHKFCKDFPGFIPSLLGNLLDERQKIKKRMKATIDPLEKKLLDYRQR 484

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            A+K+ ANS YG   ++ +R+Y K  AE +T  GRE +  ++  ++     +V+Y DTD  
Sbjct: 485  AIKILANSYYGYYAYARARWYCKECAESVTAWGREYIEMSIREIEEKYGFKVLYADTDGF 544

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
                   D    K  A + ++ +N K    LE++ +G YKR   + KKKYA +  + K  
Sbjct: 545  HATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVIDEEGK-- 602

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                 I  +GL++VRRDWS ++KE     L  +L + + E+ V  +     +V E +   
Sbjct: 603  -----ITTRGLEIVRRDWSEIAKETQARVLEALLKDGNVEEAVSIVK----EVTEKLGKY 653

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            +V  EK VI + +T+  + Y      PHV +A RL   G       G  + YI+    G 
Sbjct: 654  EVPPEKLVIHEQITRELKDY--KATGPHVAIAKRLAARG--VKIRPGTVISYIVLKGSGR 709

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                   I  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 710  -------IGDRAIPFDEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748


>gi|324120720|dbj|BAJ78751.1| DNA polymerase delta catalytic subunit [Euborellia plebeja]
          Length = 1078

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 174/678 (25%), Positives = 313/678 (46%), Gaps = 109/678 (16%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEM 697
            SE  LL++    + ++D D++ G+NI+ FD+  LL+RA+  +V + S  S+I  +     
Sbjct: 352  SESELLDQWAKFVRQVDPDIITGYNINNFDMPYLLNRAKHLKVKNFSYLSRIKNICSVVK 411

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDR 754
             K+ + + +   G        + GR+  D +L    L+RE    SY+L  ++   L + +
Sbjct: 412  SKMLQSKQM---GQRENKFVNLEGRVAFDMYLV---LIREHKLRSYTLNAVSFHFLQEQK 465

Query: 755  KEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWG 811
            ++V  H ++   Q    ++   L  Y   DA L M L+  L       +++ ++G +L  
Sbjct: 466  EDVH-HSIISELQNGNEQTRRRLAIYCLKDAILPMRLLDKLMAFINYMEMSRVTGVSLAS 524

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
               +G + + V  LL HA + + +++P                                 
Sbjct: 525  LLTRGQQVKVVSQLLRHA-KPRGFLMPS-------------------------------- 551

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                      H    +   + G  V+EP++G Y K I  LDF+SLYPSI+  +N+C+TT+
Sbjct: 552  ----------HTSAGQDEQFEGATVIEPRRGYYAKPIATLDFSSLYPSIMMAHNLCYTTL 601

Query: 932  ----ERS---PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
                +R+   PD +         + S+   G+LPE+L++L+  R+  K  +K  +   + 
Sbjct: 602  VPVAKRNIVQPDQITQTPANNFFVKSTVRKGLLPEILESLLAARKQAKADLKKETDPFRK 661

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    R     ++  +T  GR+++  T   V+   N+  
Sbjct: 662  QVLDGRQLALKISANSVYGFTGAQVGRLPCLEISSSVTAYGRQMIERTKQEVEAKYNIAN 721

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                   VIYGDTDS+M+  G++DI +A  +  +    V+ K+ K ++++ + +Y   LL
Sbjct: 722  GYPHDSMVIYGDTDSVMVQFGVEDIREAMRLGKEAADFVSDKFIKPIKLEFEKVYYPYLL 781

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA   + F     ++ ++ KG++ VRRD   L   + +  L ++L +R  +  V 
Sbjct: 782  INKKRYAG--LYFTRPEKHDKMDCKGIETVRRDNCPLVASIMNKSLEKLLVDRDPDGAVA 839

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
             +   +     D+   ++ + + V+TK L +       A  Q HV++A ++K+    T  
Sbjct: 840  FVKQMI----SDLLCNRIDISQLVVTKELARADY----AGKQAHVELANKMKKRDAGTAP 891

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYYASQQIH 1262
              GD VPY+              IA     P  LK  D  ++      ID +YY   Q+ 
Sbjct: 892  KLGDRVPYVF-------------IAGAKNTPAYLKVEDPIYVLENNIPIDFNYYLENQLS 938

Query: 1263 PVVSRLCASIEGTSPERL 1280
              + R+   I G   E +
Sbjct: 939  KPLLRIFEPILGDRAESI 956


>gi|2581872|gb|AAC47763.1| DNA polymerase alpha [Leishmania adleri]
 gi|2581896|gb|AAC47775.1| DNA polymerase alpha [Leishmania hoogstraali]
 gi|2581906|gb|AAC47780.1| DNA polymerase alpha [Leishmania tarentolae]
          Length = 308

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 181/338 (53%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLA-KTQLN---KDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K R    P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGIAKGRNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ +  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFRRGR----- 175

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                            D+D    +   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 176 -----------------DDD----EEEDGKRRAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRENRNEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKTEKDANSLAL--LEIRQKALKLTANS 308


>gi|146421489|ref|XP_001486690.1| hypothetical protein PGUG_00067 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1075

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 209/821 (25%), Positives = 362/821 (44%), Gaps = 143/821 (17%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V  K+ G SW+++ K  +  C    + S C+ E +VD  + I   S  + + ++ P+ 
Sbjct: 226  LMVDCKITGMSWITLPKGTYEMCQPHLKSSRCQIECSVDYRQLISHPSEGEWL-KMAPLR 284

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F + Q    I  A+VV           L    ++P + + FTV   
Sbjct: 285  ILSFDIECSGRKGIFPEAQHDPVIQIANVV-----------LKYGEQRPFIRNVFTV--- 330

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGF 667
                      N  A    S  GS +L  ++ E+ LL+ R  IE  + D DV++G+N + F
Sbjct: 331  ----------NTCA----SIIGSQILEHKTEEQMLLHWRQFIE--ESDPDVIIGYNTTNF 374

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGS---GASPGIMSCIAGR 722
            DL  LL RA    +    +   GRLK  R E+       ++F S   G     +  I GR
Sbjct: 375  DLPYLLDRANALGLKE--FPYFGRLKSVRQEVKD-----SVFSSRAYGTRENKVVNIDGR 427

Query: 723  LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGE 780
            +  D     +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y  
Sbjct: 428  MQLDLLQFVQREYKLRSYTLNSVSAHFLGEQKEDV-QHTIISDLQNGTRETRRRLAVYCL 486

Query: 781  TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVP 838
             DA+L M L+  L  L    ++  ++G  +   L  AR Q+++ +  L      +  ++P
Sbjct: 487  KDAYLPMRLLEKLMCLVNYTEMARVTGVPFSYLL--ARGQQIKVISQLFRKCLQEDVVIP 544

Query: 839  DKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLE 898
            +  +                      E TNE+                    Y G  V+E
Sbjct: 545  NMKS----------------------EGTNEE--------------------YEGATVIE 562

Query: 899  PKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVPH----LP 943
            P +G YD  I  LDF+SLYPSI+  +N+C+TT           + +    L P+    + 
Sbjct: 563  PVRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLSKNSIAAFNLSKDDYTLTPNGDYFVK 622

Query: 944  SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
              K  G+LP +L  L+  R+  K  +K  +   +   L+ +Q ALK++ANS+YG  G + 
Sbjct: 623  EHKRKGILPTILHELISARKKAKVDLKNETDPFRKDVLNGRQLALKISANSVYGFTGATI 682

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDI 1054
             +     ++  +T  GR ++  T + VQ+    E        VIYGDTDS+M+  G  DI
Sbjct: 683  GKLPCLAISSSVTAFGRVMIEETKNEVQSRYTTENGYDYDAQVIYGDTDSVMVKFGHQDI 742

Query: 1055 AKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
                 +  +    V++K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ K
Sbjct: 743  ETCMKLGEEAANYVSQKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTK 800

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            G++ VRRD   L + V    L  IL ER+ +     +  ++     D+   +V L + VI
Sbjct: 801  GIETVRRDNCRLVQNVITKVLEYILEERNVDKAERFVKQTIA----DLLQNRVDLSQLVI 856

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            TK  +K    +  A  Q H+++A R+K+    +  + GD V Y+I     T +       
Sbjct: 857  TKAYSK----HEYAAKQAHIELAERMKKRDPGSAPTLGDRVAYVIINSSSTKN------- 905

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               +  D L   +    ID+ YY   Q+   + R+   I G
Sbjct: 906  -YEKSEDPLFVLENSLPIDVKYYLENQLANPLMRIFEPILG 945


>gi|224002805|ref|XP_002291074.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220972850|gb|EED91181.1| DNA polymerase, partial [Thalassiosira pseudonana CCMP1335]
          Length = 999

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 170/674 (25%), Positives = 306/674 (45%), Gaps = 88/674 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS---- 684
             G+ V+  E+ +  LL +    L+  D+D+  G+N+  FD+  LL RA+     +     
Sbjct: 254  VGAQVISSETEQEMLL-KWRTFLHASDADIFTGYNVQNFDIPYLLDRAEALWKKNDPKLR 312

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
            ++++ GR+K ++  K ++       G      + I GR++ D     +   +  SYSL  
Sbjct: 313  IFTQWGRVKNTQTKKRQQMFQSSAYGRRENTETTIEGRVIFDMLPYMQRNHKLSSYSLNS 372

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            +    L++ +++V  H ++   Q  T      L  Y   DA L   LM  LSVL    ++
Sbjct: 373  VCAEYLSQQKEDVH-HSIISDLQNGTDADRHRLAVYCLKDALLPQRLMDKLSVLINYVEM 431

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      +   +  +V  ++L   R    +VP             ++S  G ++  
Sbjct: 432  ARVTGVPVSFLISRGQQIKVFSMILRKCRDVNLVVP-----------TLRKSGAGADE-- 478

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                        Y G  VL+P K  Y+  I  LDF SLYPSI+Q
Sbjct: 479  ---------------------------GYEGATVLDPIKSYYEVPIATLDFASLYPSIMQ 511

Query: 923  EYNICFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
             YN+C++T+              +RS +G    + S+   G+LP +L+ L+  R+  K  
Sbjct: 512  AYNLCYSTMVSQHEASKIDPSKYKRSENGHT-FVHSNVKKGILPIILEELLSARKRAKKD 570

Query: 969  MKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            MK A +  +    + +Q ALK++ANS+YG  G    +    P+A  +T  GR +L  T  
Sbjct: 571  MKNAPNDFEKSVQNGRQLALKVSANSVYGFTGAGVGQLPCVPIASSVTAYGRFLLEKTKA 630

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+ +         N +V+YGDTDS+M+  G   +A+   +A +  ++ +  +   + ++
Sbjct: 631  YVEEHYTVAHGYKHNAKVVYGDTDSVMVKFGTATVAETFPLAIEAAEKCSAIFPDPILLE 690

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ VRRD   L +EV    L++I+
Sbjct: 691  FEKVYYPYLLMNKKRYAG--LMWTQVEKYDYMDTKGLETVRRDNCALVREVIQTSLNKII 748

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             ER+    ++ + + +     D+   ++ + + VITK+L    E Y     Q HV++A R
Sbjct: 749  IERNVPGAIDYVKSQI----ADLLQNKMDISRLVITKSLGGKAEDY--KVKQAHVELAAR 802

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +++    +    GD VPY+I         ++ G A   +  D +   +    ID  +Y S
Sbjct: 803  MRKRDAGSAPQMGDRVPYVIIT-------AAKGAANFEKAEDPIYVLENNIPIDCKWYLS 855

Query: 1259 QQIHPVVSRLCASI 1272
             Q+   ++R+   I
Sbjct: 856  NQLSKPLTRIFEPI 869


>gi|145342057|ref|XP_001416112.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576336|gb|ABO94404.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 982

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 191/757 (25%), Positives = 344/757 (45%), Gaps = 114/757 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   V G +W+     S     ++ S C+ E+ +   K I   +  ++ +++ P  + 
Sbjct: 128  FMVDCAVVGGNWIEFPVNSYTVRAKKASHCQIEVDIMYDKLISHPAEGEY-SKLAPFRIL 186

Query: 556  AINLKTVFNKRQ----DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            +++++    K       ++ ++  + +   +   D P++ + W              LD 
Sbjct: 187  SVDIECAGRKGHFPDAQLDPVIQIATLVTEQGS-DKPIIRAVWT-------------LDT 232

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
               P+             G++VL  +  ER LL      L   D D+L+G+NI  FD   
Sbjct: 233  -CAPI------------VGADVLSFKD-ERELLRNWGNFLRGCDPDLLIGYNIVNFDFPY 278

Query: 672  LLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGA----SPGIMSCIAGRLLCD 726
            LL RA+   V     W   GRL  +   K+R   T+F S A        +SC  GR+  D
Sbjct: 279  LLERAEKLGVADFPYW---GRLIGT---KVRMRDTVFSSKAYGTHESKEISC-EGRVQFD 331

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAW 784
                 +   +  SYSL  ++   L + +++V  +  +   Q  T E+   L  Y   DA+
Sbjct: 332  MLRAIQRDYKLSSYSLNAVSAHFLGEQKEDVH-YSAISELQNGTPETRRRLAVYCLKDAY 390

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L   L+  L  +    ++  ++G      L   ++ +V   LL   R +  ++P    +V
Sbjct: 391  LPQRLLDKLMYMYNYIEMARVTGVPLNYLLTRGQSIKVMSQLLRKARQRNMLIPH---HV 447

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
            K+                                   + + + G AY G  VL+ K G Y
Sbjct: 448  KQG--------------------------------GGNVQAEGGVAYEGATVLDAKAGYY 475

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTV-------ERSPD--GLVP----HLPSSKTTGVL 951
            +  I  LDF SLYPSI+  +N+C++T+       + +PD  G  P     + +SK  G+L
Sbjct: 476  EMPIATLDFASLYPSIMMAHNLCYSTLVPKDKVGKLNPDDYGTSPSGDTFVKASKVKGIL 535

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            PE+L+ L+  R+  K  +K A+  L+   LD +Q ALK++ANS+YG  G    +     +
Sbjct: 536  PEILEELLGARKRAKADLKKATDPLQKAVLDGRQLALKVSANSVYGFTGAMVGQLPCLEI 595

Query: 1011 AELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +   T  GR ++  T  +V+           N EVIYGDTDS+MI     D+A++  +  
Sbjct: 596  SSSTTAYGRTMIDHTKKMVEEKYRTVNGYTGNAEVIYGDTDSVMIKFNTPDLAESMKLGE 655

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V++ + K ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD
Sbjct: 656  EAAVYVSETFLKPIKLEFEKVYWPYLLISKKRYAG--LLWTNTENYDKMDTKGIETVRRD 713

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL ++V +  L +IL +R  +  V+ + +++     D+   ++   + VITK  TK  
Sbjct: 714  NCLLVRQVIETVLEKILKQRDVQGAVKYVQSTI----ADLLMNRLDFSQLVITKGFTKEA 769

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            ++Y       H+++A R++Q   +T    GD + Y+I
Sbjct: 770  DSY--GVKMAHIELAQRMRQRDPATAPVVGDRIAYVI 804


>gi|213406475|ref|XP_002174009.1| DNA polymerase delta catalytic subunit [Schizosaccharomyces japonicus
            yFS275]
 gi|212002056|gb|EEB07716.1| DNA polymerase delta catalytic subunit [Schizosaccharomyces japonicus
            yFS275]
          Length = 1067

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 177/677 (26%), Positives = 308/677 (45%), Gaps = 97/677 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G+ V   E  +R +L      + ++D DV++G+NI  FD   L+ RA+V  VPS  ++ 
Sbjct: 329  VGTQVFEFED-QREMLAAWAKFIREVDPDVMIGYNICNFDFPYLIERAKVLNVPS--FNY 385

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GRL   RSE+ +       +G+  S   ++ I GRL  D     +   +  SYSL  ++
Sbjct: 386  LGRLTNFRSEVKETSFSSKAYGTRDSK--VTVIPGRLQLDMLQVMQRDYKLRSYSLNAVS 443

Query: 747  KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
              Q  K++KE   + ++   Q  T +S   L  Y   DA+L   LM  L       ++  
Sbjct: 444  -AQFLKEQKEDVHYSIITDLQNGTPDSRRRLAIYCLKDAFLPQRLMDKLMCFVNYTEMAR 502

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L  +R Q+V+ +                     +++ ++  +H +   N+ 
Sbjct: 503  VTGVPFNFLL--SRGQQVKVV---------------------SQLYRKALSHDLVIPNI- 538

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                              R       Y G  V+EP KG YD  I  LDF+SLYPSI+  +
Sbjct: 539  ------------------RVNGTDEQYEGATVIEPVKGYYDTPIATLDFSSLYPSIMMAH 580

Query: 925  NICFTTVER-----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            N+C+TT+                   +P+G    + S+   G+LP + ++L+  R+  K 
Sbjct: 581  NLCYTTLTDPETMSRLNMKQDEDYIITPNGDY-FVRSNIRKGLLPLIFEDLLGARKRAKA 639

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K   LD +Q ALK++ANS+YG  G +N R     ++  +T  GR+++  T 
Sbjct: 640  DLKKETDPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTK 699

Query: 1027 DLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
             +V+    +        +VIYGDTDS+M+  G  D+ +   +  +    V+ ++   +++
Sbjct: 700  SVVEQTYTIKNGYSHDAKVIYGDTDSVMVKFGKKDLTEVMKLGQEAADFVSDQFLNPIKL 759

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +   +     Y+ ++ KG++ VRRD   L   V D  L ++
Sbjct: 760  EFEKVYFPYLLISKKRYAGLF--WTRPEKYDKLDSKGIETVRRDNCPLVSYVIDTALRKM 817

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ++     VE   +   K+  D+   ++ + + VITK LTK       A  Q HV++A 
Sbjct: 818  LIDQD----VEGAQSFTKKIISDLLQNKIDMSQLVITKALTKTDY----AAKQAHVELAE 869

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD V Y+I          + G     R  D +   +    ID  YY 
Sbjct: 870  RMRKRDAGSAPALGDRVAYVII-------KGAQGDQFYMRSEDPMYVLENNIPIDAKYYL 922

Query: 1258 SQQIHPVVSRLCASIEG 1274
              Q+   + R+   I G
Sbjct: 923  ENQLAKPLLRIFEPILG 939


>gi|428182790|gb|EKX51650.1| DNA polymerase delta catalytic subunit [Guillardia theta CCMP2712]
          Length = 985

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 296/658 (44%), Gaps = 107/658 (16%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GA 711
            D D+L G+NI GFD+  L+ RA+  +V S  +  +GR+K S   K +  +T F S   G 
Sbjct: 265  DPDILTGYNIVGFDIPYLMDRAKALKVAS--FPVLGRMKNS---KTKIKKTTFSSAQMGT 319

Query: 712  SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--L 769
                   I GR++ D     +   +  SY+L  +    L + +++V  H ++   Q    
Sbjct: 320  RETNEISIDGRVIFDVLQAIQREYKLHSYTLNSVCAKFLGEQKEDVH-HSIISDLQNGDA 378

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
            ES   L  Y   DA+L   L+  L  +    ++  ++G   G  L   +  +V   LL  
Sbjct: 379  ESRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPIGWLLVRGQMLKVMSQLLRK 438

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
             R+K  ++P                N  VE        + D  F+               
Sbjct: 439  ARSKGLLLP----------------NLKVE--------STDEKFE--------------- 459

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD------------- 936
               G +V+EPKKG Y   I  LDF SLYPSI+  +N+C++T+    D             
Sbjct: 460  ---GAIVIEPKKGFYSDPIATLDFASLYPSIMMAHNLCYSTLVSKEDLRTNKFNFTPEQI 516

Query: 937  GLVPH----LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTA 991
             + PH    +  S   G+LPE+L  L+  R+  K  +K A+   ++  LD +Q ALK++A
Sbjct: 517  TVTPHGDTFVKPSVKKGILPEILDELLAARKRAKADLKKATDPIMKAVLDGRQLALKVSA 576

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTD 1043
            NS+YG  G    +     ++  +T  GRE++  T   V+ +  +         V+YGDTD
Sbjct: 577  NSVYGFTGAQVGKLPCLEISSSVTAFGREMIELTKAKVEAHYTVANGYKHDSVVVYGDTD 636

Query: 1044 SIMIHSG-------IDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYA 1095
            S+MI  G       ID+  K    A      VN  + K ++++ + +Y   LL+ KK+YA
Sbjct: 637  SVMIKFGENRERWMIDETMKLALSAADF---VNTSFVKPIKLEFEKVYYPYLLMNKKRYA 693

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
            A+     D   ++ ++ KG++ VRRD   L + + D CL  IL +R      E +     
Sbjct: 694  ALLWTNPDK--FDKMDCKGIETVRRDNCGLVRTMVDTCLKTILMQRDPNAAAEYVKG--- 748

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTV 1214
             V  D+   +V + + +ITK L K  E   D+K+ Q HV +A R+K+   +T    GD V
Sbjct: 749  -VIRDLLMNKVDISELIITKALHKSEE---DSKSAQAHVVLAARMKERDPNTAPVLGDRV 804

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            PY+I   +G     +   A+     D +   +    ID+ +Y   Q+   + RL   I
Sbjct: 805  PYVII--KGPKGAKAFEKAE-----DPIFVLENNLPIDVQHYLDHQLSQPILRLFEPI 855


>gi|297527543|ref|YP_003669567.1| DNA polymerase Pol2 [Staphylothermus hellenicus DSM 12710]
 gi|297256459|gb|ADI32668.1| DNA polymerase Pol2 [Staphylothermus hellenicus DSM 12710]
          Length = 801

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 172/634 (27%), Positives = 299/634 (47%), Gaps = 117/634 (18%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            LD D++VG+N  GFD   L+ R++   V   +  ++G + R+         + +G  + P
Sbjct: 237  LDPDIIVGYNTDGFDWPYLIERSKYVGVKLDVTRRVGTIPRT---------STYGHISVP 287

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKEVGPHDVLKMFQTLE 770
            G       RL  D +  + ++      SL  +A+        +R  +   D+ K +   +
Sbjct: 288  G-------RLNTDLYYFAEEIPEVKVKSLENVAEYLGVMKKSERVIIEYIDIPKYWDDEK 340

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE-YLLLHA 829
                L++Y   D   +  L      LP   QL+NI+G    +    +   R+E YL+  A
Sbjct: 341  LRHMLLQYNIDDVKSTYGLAEKF--LPFAMQLSNITGLPLDQIGAASVGFRLEWYLIREA 398

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
            F+  + +VP+                                           R G+   
Sbjct: 399  FKYGE-LVPN-------------------------------------------RAGRAAE 414

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------SPDGL 938
            +Y G +VL+P KG+++  I +LDF+S+YP+I+ +YN+   T+ R           +P+  
Sbjct: 415  SYRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIIRNEKCDPRKHNIAPE-- 471

Query: 939  VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYG 996
            V H    +  G   ++L+ L+  R+ +K+ MK    +  + + LD +Q+A+K+ AN+ YG
Sbjct: 472  VGHCFRKEPPGFFKKVLETLLSLRKQIKSEMKKYPPTSYEYRLLDERQKAVKVLANATYG 531

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
             +G+ ++R+Y +  AE +T  GR+ ++S ++L +  L L+VIYGDTDS+ +    D +  
Sbjct: 532  YMGWVHARWYCRECAEAVTAWGRQTIKSAIELAR-KLGLKVIYGDTDSLFVTYDKDRVE- 589

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGL 1115
                  K+I  +  K    EI +D +YKR+   + KK+YA +    +DG     I+  G 
Sbjct: 590  ------KLIDLIQTKL-GFEIKIDKIYKRVFFTEAKKRYAGL---LEDGR----IDIVGF 635

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            + VR DW+ ++KEV +     +L E S +  +E +     KV  D+++G++ L+K +I K
Sbjct: 636  EAVRGDWADIAKEVQEKVTEILLKENSVDKAIEYVR----KVIADLKAGKIPLDKLIIWK 691

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
            TL+K  E Y  + + PHV  A +L ++G     S  D + Y+I    G        I+ R
Sbjct: 692  TLSKRIEEY--SVDAPHVVAAKKLVKAG--IKISVNDKIGYVILKGGGK-------ISSR 740

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
            A     +K  D K +ID +YY   QI P   R+ 
Sbjct: 741  AEPYIFVK--DPK-LIDTEYYIDHQIVPAALRIL 771


>gi|145251457|ref|XP_001397242.1| DNA polymerase delta catalytic subunit [Aspergillus niger CBS 513.88]
 gi|134082776|emb|CAK48550.1| unnamed protein product [Aspergillus niger]
 gi|350636552|gb|EHA24912.1| hypothetical protein ASPNIDRAFT_210383 [Aspergillus niger ATCC 1015]
          Length = 1105

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 174/658 (26%), Positives = 304/658 (46%), Gaps = 107/658 (16%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS-- 709
            K+D DV++G+NI+ FD   LL RA+  +      W+++  ++       +   T F S  
Sbjct: 385  KVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTRLNGVQS------QSKETNFSSKQ 438

Query: 710  -GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
             G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    + +++
Sbjct: 439  MGNRDTKSTNTNGRIQLDMLQLVQRDYHLR--SYTLNSVSYEFLGEQKEDVHHTMITELY 496

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
              T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++
Sbjct: 497  NGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFI 554

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      ++ ++P+                                     T  ND +
Sbjct: 555  SQLFRKALEQQLVIPN-------------------------------------TKSNDEQ 577

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT      VER    
Sbjct: 578  D------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKSSVERLKLV 631

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P+G +    +    G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 632  KDEDYIVTPNGDM-FCTAKVRKGLLSQILEELLSARKRAKKELAVETDPFKKAVLNGRQL 690

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +V
Sbjct: 691  ALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKV 750

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+D++ +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 751  IYGDTDSVMVKFGVDNLEEAMKLGQEASEYVSSKFLKPIKLEFEKVYFPYLLINKKRYAG 810

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + + +   Y+ ++ KG++ VRRD  LL + V +  L +IL ER  +   + + +++  
Sbjct: 811  --LYWTNPNKYDKMDTKGIETVRRDNCLLVQNVIETVLQKILVERDIDGAQDYVKDTI-- 866

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK L+K  +AY     Q HV++A R+++    +  + GD V Y
Sbjct: 867  --SDLLQNKIDMSKLVITKALSK--DAY--TAKQAHVELAERMRKRDAGSAPTLGDRVAY 920

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +I    G       G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 921  VIIKGAG-------GSKNYERSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|154344040|ref|XP_001567964.1| putative DNA polymerase delta catalytic subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134065298|emb|CAM40726.1| putative DNA polymerase delta catalytic subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1032

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 198/806 (24%), Positives = 347/806 (43%), Gaps = 122/806 (15%)

Query: 496  FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            FLV  ++ G +WL+++  KF SCP   + S C+ E+   S +D++          + P  
Sbjct: 182  FLVDNEIGGSNWLTLTSGKFVSCPL--KTSTCQIEVAC-SHEDVQNHEPLGDYLSIAPFR 238

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + +I++     K +F + +  + ++  +  C        P+  +                
Sbjct: 239  ILSIDIECQGRKGLFPEPEH-DPVIQIANYCVEYGHESEPLTKT---------------- 281

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                IF +            AG+ V   E+    LL      +  LD D+L G+NI  FD
Sbjct: 282  ----IFTL------KSCAPIAGAQVFSYETEADMLLAWATF-MKALDPDILTGYNICNFD 330

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
               LL+RA   +  S  +   GR          K       G        + GR++ D  
Sbjct: 331  FPYLLNRATALKA-SDAFHYWGRQVHERTAARDKKFQSKQMGNREYTELTLEGRIIMDAM 389

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLS 786
            +  +   +  SYSL  +++  L + +++V  H ++   Q    E+   L  Y   DA L 
Sbjct: 390  VVIQRDYKLRSYSLNSVSQNFLGEQKEDVH-HSIISDLQQGDEETRRRLAVYCLKDALLP 448

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            ++L+  L  +    ++  ++G   G  L+  +  +V  +LL   + KK +VP        
Sbjct: 449  VKLLDRLMCIVNNVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVP-------- 500

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                            VE     D                RG  Y G  V++P KG Y+ 
Sbjct: 501  ---------------TVEYTGGSD----------------RG--YEGATVIDPIKGFYNC 527

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPH--LPSSKTT----------GVLPE 953
             +  LDF SLYPSII  +N+C++T+ R  D  L P   L  S T+          G+LPE
Sbjct: 528  PVATLDFASLYPSIIIAHNLCYSTLVRPADARLYPEDALDRSPTSDVFVKKDVFPGILPE 587

Query: 954  LLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            +L++L+  R+  +  MK      L+ + L+ +Q ALK++ANS+YG  G    +     ++
Sbjct: 588  VLQDLLAARKHARAMMKDVPMHSLEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEIS 647

Query: 1012 ELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDDIAKAKA-------IAGK 1063
              +T  GR+++  T +LV+       V+YGDTDS+M+    D+ A  K           +
Sbjct: 648  ASVTAYGRQMIDKTKNLVEQLYPGTRVLYGDTDSVMVKCVTDEKASDKERLQAAMDFGIE 707

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              + V+  + K ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD 
Sbjct: 708  AAERVSSDFLKPIKLEFEKVYFPYLLMNKKRYAGLLWTNTDQ--FDKLDAKGIETVRRDN 765

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   +    L++IL  RS E  ++ +  ++     D+   ++ +   VITK  +K  +
Sbjct: 766  CPLVARMVSGVLNRILIHRSVESAIDFVKGTI----SDLLLNRLDISNLVITKAFSKAED 821

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             Y  A  Q H+ +  R++Q   ++  + GD V Y+I         ++ G     R  D +
Sbjct: 822  EYAGA--QAHIALVERMRQRDPASAPTIGDRVAYVII-------KAAKGAKAYERSEDPI 872

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRL 1268
               D    ID  YY   Q+ P + R+
Sbjct: 873  YVLDNNIPIDTQYYLEHQLAPPILRV 898


>gi|348533053|ref|XP_003454020.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Oreochromis
            niloticus]
          Length = 1105

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 183/682 (26%), Positives = 314/682 (46%), Gaps = 98/682 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS +LC  + E  LL      L  +D D++ G+NI  FD   LL+RA   +V  + +
Sbjct: 366  SIVGSQILCF-TQETKLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKV--NYF 422

Query: 687  SKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYS 741
              +GR++  +S +  L       G   +  I   + GR+  D     + LLR+    SY+
Sbjct: 423  PYLGRVRGIKSVLKDLNFQSKQMGRRENKTIN--MEGRVQFDLL---QVLLRDYKLRSYT 477

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +   
Sbjct: 478  LNAVSFHFLQEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINY 536

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G      L   +  +V   LL     +  ++P     V +T+        G E
Sbjct: 537  MEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKTE--------GGE 583

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D                              Y G  V+EP+KG Y   I  LDF+SLYPS
Sbjct: 584  D------------------------------YTGATVIEPEKGYYSLPIATLDFSSLYPS 613

Query: 920  IIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRRRM 964
            I+  +N+C+TT+ +       GL P            + SS   G+LPE+L+NL+  R+ 
Sbjct: 614  IMMAHNLCYTTLLQKGSVDKLGLAPEDFIKTPTGDLFVKSSLRKGLLPEILENLLSARKR 673

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K  +   K Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++ 
Sbjct: 674  AKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIE 733

Query: 1024 STVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-C 1074
             T  LV++   L        +VIYGDTDS+M+  G+  + +A  I  +  + V+  +   
Sbjct: 734  QTKQLVESKYTLSNGYQADAKVIYGDTDSVMVKLGVATVKEAMDIGREAAEWVSSHFTPP 793

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + CL
Sbjct: 794  IKLEFEKVYYPYLLINKKRYAGLYFS-SSASTHDKMDCKGIETVRRDNCPLVANLINTCL 852

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             +IL +R  +  VE       +V  D+   ++ + + VITK LT+  + Y  A  Q HV+
Sbjct: 853  QKILIDRDPQGAVEHAK----EVISDLLCNRIDISQLVITKELTRTAQEY--AGKQAHVE 906

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+++    +  + GD VPY+          ++ G A   +  D +   +    ID  
Sbjct: 907  LAERMRKRDAGSAPNLGDRVPYV-------IIKAAKGAAAYMKSEDPIYVLENNIPIDTQ 959

Query: 1255 YYASQQIHPVVSRLCASIEGTS 1276
            YY  QQ+   + R+   I G S
Sbjct: 960  YYLEQQLSKPLLRIFEPILGES 981


>gi|324120758|dbj|BAJ78770.1| DNA polymerase delta catalytic subunit [Eretes sticticus]
          Length = 998

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 170/674 (25%), Positives = 310/674 (45%), Gaps = 93/674 (13%)

Query: 636  CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
            C  +E  LL      +  +D D+  G+NI+ FD   LL+RA+  +V +  +  +GRLK +
Sbjct: 268  CFETEYELLEAWGQFVRDIDPDLFTGYNINDFDFPYLLNRAEHLKVKN--FPYLGRLK-N 324

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             +  +++       G    I     GR+L D  +  +   +  SY+L  +++  L + ++
Sbjct: 325  VLTAVKENINQTKFGKRTFITINFEGRILYDMLVVMKRDFKLRSYTLNNVSQEILGEQKE 384

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGK 812
            +V  + ++   Q    ++   L  Y   DA L + L+ H+       ++  ++G  L   
Sbjct: 385  DVH-YSIITDLQNGDEQTRRRLAVYCVKDADLPLRLLNHVKSFTNDIEMARVTGVPLTSL 443

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
              +G + + V  LL HA RA  Y +P                        V+   N +  
Sbjct: 444  LTKGEQVKVVAQLLRHA-RAHNYFMPA-----------------------VQGQANSEQ- 478

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-- 930
                             +Y G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT  
Sbjct: 479  -----------------SYEGATVIEPVRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLI 521

Query: 931  --------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK 976
                          +  +P G +  + S+   G+LP++L++L+  R+  K  +K A+   
Sbjct: 522  NKVTKDKLGLTNDQITETPAGHL-FVKSTVREGLLPQILQSLLSARKRTKAELKNATDPV 580

Query: 977  IQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            I+  LD +Q ALK++ANS+YG  G +  +     ++  +T  GR ++  T  LV+ +  L
Sbjct: 581  IRSVLDGKQLALKISANSVYGFTGATVGKLPCLEISGSVTAYGRTMIEQTKQLVEQHYCL 640

Query: 1036 --------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                    +VIYGDTDS+M++  +  + ++  +  +  + ++  + K ++++ + +Y   
Sbjct: 641  NNGYESDSKVIYGDTDSVMVNFKVQSLERSMELGREAAELISTNFIKPIKLEFEKVYYPY 700

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KG++ VRRD  LL   V + CL ++L  R  +  
Sbjct: 701  LLINKKRYAGLYYTKTDK--YDKMDCKGIETVRRDNCLLVVNVINTCLQKLLINRDPDGA 758

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V+       +V  ++   QV + + VITK LTK       A  Q HV++  ++++     
Sbjct: 759  VQFAK----QVIANLLRNQVDISQLVITKELTKADY----AGKQAHVELMHKIQKRDPGN 810

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD +PY+       ++  +V   Q+A  P  +   +    ID +YY   Q+   + 
Sbjct: 811  APKVGDRIPYVF-----VAANKNVPAYQKAEDP--IYVLENNIPIDTNYYLENQLSKPLV 863

Query: 1267 RLCASIEGTSPERL 1280
            R+   I G   E +
Sbjct: 864  RIFEPILGDKAESI 877


>gi|145592085|ref|YP_001154087.1| DNA polymerase II [Pyrobaculum arsenaticum DSM 13514]
 gi|145283853|gb|ABP51435.1| replicative DNA polymerase I [Pyrobaculum arsenaticum DSM 13514]
          Length = 786

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 181/649 (27%), Positives = 295/649 (45%), Gaps = 110/649 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R +L   +  +   D DV+VG+N + FD   L  RA+   VP     ++ RL  +    
Sbjct: 211  DRGVLRSFVEYVRSFDPDVVVGYNSNNFDWPYLAERAKAVGVPL----RVDRLGGAPQ-- 264

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT--QLNKDRKEV 757
                ++++G  +       + GR   D +    +       +L ++A+    + +D + +
Sbjct: 265  ----QSVYGHWS-------VLGRANVDLYNIVDEFPEIKLKTLDRVAEYFGVMRRDERVL 313

Query: 758  GP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P H + + ++       L +Y   D   +  L   L  LP   QL+++SG    +    
Sbjct: 314  IPGHKIYEYWRDPSKRPLLRQYVIDDVRSTYGLSEKL--LPFLIQLSSVSGLPLDQVAAA 371

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +   RVE++LL        + P++                  E+R  E            
Sbjct: 372  SVGNRVEWMLLRYAYGLGEVAPNR------------------EEREYE------------ 401

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV----- 931
                          Y G +VLEPK GLY   +L+LDF+S+YP+++  YN+   T      
Sbjct: 402  -------------PYKGAIVLEPKPGLYGD-VLVLDFSSMYPNVMMRYNLSPDTYLEPGE 447

Query: 932  ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQ 984
               P+G+     V H    +  G +P++L+ LV  RR V+  MK       + + LD +Q
Sbjct: 448  PDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVTLRRAVREEMKKYQPETSEYRILDERQ 507

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALK+ AN+MYG  G+  +R+Y K +AE +T   R IL+  +   +  L + VIYGDTDS
Sbjct: 508  KALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIGYAR-RLGIMVIYGDTDS 566

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKD 1103
            + +  G D          K+ + V++KY  +EI  D  Y+++L  + KK+YA +    +D
Sbjct: 567  LFVKKGGD--------LEKLARYVDEKY-GIEIKADKDYEKVLFTEAKKRYAGL---LRD 614

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G     I+  G ++VR DWS L+KEV    +  IL  R   +  + +   +  V E ++S
Sbjct: 615  GR----IDIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVIERLKS 670

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G+  L+  +I KTL K    Y    + PHV+ AL LK+ GY  G   G T+ Y+I     
Sbjct: 671  GKFDLDDLIIWKTLDKELGEY--KAHPPHVRAALILKKKGYKVG--RGTTIGYVIVKGGE 726

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              S  S+         D+L K      IDIDYY  +Q+ P   R+   I
Sbjct: 727  KVSERSLPYILV----DDLAK------IDIDYYIEKQVIPAALRIAEVI 765


>gi|62736744|gb|AAX97698.1| DNA polymerase [Pyrobaculum arsenaticum]
          Length = 786

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 181/649 (27%), Positives = 295/649 (45%), Gaps = 110/649 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R +L   +  +   D DV+VG+N + FD   L  RA+   VP     ++ RL  +    
Sbjct: 211  DRGVLRSFVEYVRSFDPDVVVGYNSNNFDWPYLAERAKAVGVPL----RVDRLGGAPQ-- 264

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT--QLNKDRKEV 757
                ++++G  +       + GR   D +    +       +L ++A+    + +D + +
Sbjct: 265  ----QSVYGHWS-------VLGRANVDLYNIVDEFPEIKLKTLDRVAEYFGVMRRDERVL 313

Query: 758  GP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
             P H + + ++       L +Y   D   +  L   L  LP   QL+++SG    +    
Sbjct: 314  IPGHKIYEYWRDPSKRPLLRQYVIDDVKSTYGLSEKL--LPFLIQLSSVSGLPLDQVAAA 371

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +   RVE++LL        + P++                  E+R  E            
Sbjct: 372  SVGNRVEWMLLRYAYGLGEVAPNR------------------EEREYE------------ 401

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV----- 931
                          Y G +VLEPK GLY   +L+LDF+S+YP+++  YN+   T      
Sbjct: 402  -------------PYKGAIVLEPKPGLYGD-VLVLDFSSMYPNVMMRYNLSPDTYLEPGE 447

Query: 932  ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQ 984
               P+G+     V H    +  G +P++L+ LV  RR V+  MK       + + LD +Q
Sbjct: 448  PDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVTLRRAVREEMKKYQPETSEYRILDERQ 507

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDS 1044
            +ALK+ AN+MYG  G+  +R+Y K +AE +T   R IL+  +   +  L + VIYGDTDS
Sbjct: 508  KALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIGYAR-RLGIMVIYGDTDS 566

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKD 1103
            + +  G D          K+ + V++KY  +EI  D  Y+++L  + KK+YA +    +D
Sbjct: 567  LFVKKGGD--------LEKLARYVDEKY-GIEIKADKDYEKVLFTEAKKRYAGL---LRD 614

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
            G     I+  G ++VR DWS L+KEV    +  IL  R   +  + +   +  V E ++S
Sbjct: 615  GR----IDIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVIERLKS 670

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
            G+  L+  +I KTL K    Y    + PHV+ AL LK+ GY  G   G T+ Y+I     
Sbjct: 671  GKFDLDDLIIWKTLDKELGEY--KAHPPHVRAALILKKKGYKVG--RGTTIGYVIVKGGE 726

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              S  S+         D+L K      IDIDYY  +Q+ P   R+   I
Sbjct: 727  KVSERSLPYILV----DDLAK------IDIDYYIEKQVIPAALRIAEVI 765


>gi|168003912|ref|XP_001754656.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694277|gb|EDQ80626.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1156

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 175/661 (26%), Positives = 308/661 (46%), Gaps = 95/661 (14%)

Query: 642  ALLNRLMIELYKLDS-DVLVGHN-ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            AL++ L++ L  + S +VL  ++ I+ F  D+ ++  +  ++    +  +GR++ S   +
Sbjct: 426  ALVSVLVLSLANISSLEVLYSYSWITSFAYDIYINSIRAEKLDVVEFPILGRIRNS---R 482

Query: 700  LRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            +R     F S   G        I GR+  D     +   +  SYSL  ++   L + +++
Sbjct: 483  VRMKDASFSSRQYGIRESKELTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKED 542

Query: 757  VGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++  ++G      L
Sbjct: 543  VH-HSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLL 601

Query: 815  QGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
              AR Q ++ L  LL   + + +++P+    VK         + GV              
Sbjct: 602  --ARGQSIKVLSQLLRKAKQRNFVLPN----VK---------SQGVVS------------ 634

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
                           G ++ G  VL+ K G YDK I  LDF SLYPSI+  YN+C+ T+ 
Sbjct: 635  ---------------GESFEGATVLDAKAGYYDKPIATLDFASLYPSIMMAYNLCYCTLV 679

Query: 933  RSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTWMKTASG-LK 976
            R+ D     L   + T               G+LPE+L+ L+  R+  K  +K A+  L+
Sbjct: 680  RAEDQHYLRLEPEQVTKTPSGDMFVKPSLEKGILPEILEELLAARKRAKADLKLATDPLE 739

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--- 1033
               LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T  LVQ      
Sbjct: 740  KAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSFGRQMIDHTKKLVQERFTTA 799

Query: 1034 -----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                 + EVIYGDTDS+M+  G  D+ +A  +  +  Q+++  + + ++++ + +Y   L
Sbjct: 800  NSYSHDAEVIYGDTDSVMVQFGTSDVHEAMELGREAAQQISDTFTQPIKLEFEKVYWPYL 859

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA   + +     Y+ ++ KG++ VRRD  LL K +   CL +IL +R     +
Sbjct: 860  LISKKRYAG--LLWTKPEKYDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDIPGAI 917

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + + N++     D+   ++ L   VITK LTK  +AY +     HV++A R+++   +T 
Sbjct: 918  QYVKNTI----SDLLMNRMDLSLLVITKGLTKAGDAYEN--KAAHVELAERMRKRDAATA 971

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             + GD VPY+I         ++ G     +  D +   +    ID  YY   Q+   + R
Sbjct: 972  PNVGDRVPYVII-------KAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLR 1024

Query: 1268 L 1268
            L
Sbjct: 1025 L 1025


>gi|324120724|dbj|BAJ78753.1| DNA polymerase delta catalytic subunit [Zorotypus sp. 154-1]
          Length = 999

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 179/676 (26%), Positives = 310/676 (45%), Gaps = 105/676 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
            ++E+ +L      + ++D D+  G+NI+ FD   L++RA+  +V    +  +GR+K  RS
Sbjct: 270  NTEQKMLEAWSSFVREVDPDIFTGYNINNFDFPYLINRAKHLKVKD--FEYLGRIKNIRS 327

Query: 696  EMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQ 749
             +       T+  S   G      +   GR   D  L    L+R+    SY+L  ++   
Sbjct: 328  VVKD-----TVLQSKQMGRRENKTTNFEGRAPFDVLLV---LIRDYKLRSYTLNAVSYHF 379

Query: 750  LNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H+++   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G
Sbjct: 380  LQEQKEDVH-HNIITDLQNGNPQTRRRLAVYCLKDAYLPIRLLEKLMCIINYMEMARVTG 438

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L   +  +V   LL   R + Y++P               +  GV         
Sbjct: 439  VSLSSLLTRGQQIKVVSQLLRKAREQGYLMP---------------AYQGV--------- 474

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             +D  F+                  G  V+EPKKG Y   I+ LDF+SLYPSI+  +N+C
Sbjct: 475  GQDEQFE------------------GATVIEPKKGYYADPIVTLDFSSLYPSIMMAHNLC 516

Query: 928  FTTV----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            +TT+     +   GL              +  S   G+LPE+L+NL+  R+  K  +K  
Sbjct: 517  YTTLLQGNAKDKFGLTEDQYLKTPTANFFVRKSVRKGLLPEILENLLAARKRAKADLKNE 576

Query: 973  SG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ 
Sbjct: 577  TDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAFGRTMIEQTKQEVEQ 636

Query: 1032 NLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGL 1082
            + N+E        VIYGDTDS+MI  G+  + +A  +  +  + V+ K+   ++++ + +
Sbjct: 637  HYNIENGFSHDACVIYGDTDSVMIKFGVKKLEEAMELGRQSAEFVSSKFINPIKLEFEKV 696

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD S L   + + CL ++L +R 
Sbjct: 697  YFPYLLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNSPLVANMINTCLQKLLIDRD 754

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
                V+       +V  D+   ++ + + VITK LTK       A  Q HV++A ++K+ 
Sbjct: 755  PNGAVDYAK----EVISDLLCNRIDISQLVITKELTKSDY----AGKQAHVELAAKMKKR 806

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
               T    GD VPY++     T++  +     +A  P  +   +    ID DYY   Q+ 
Sbjct: 807  DPGTAPKLGDRVPYVL-----TAAAKNTPAYLKAEDP--IYVLENSVPIDFDYYLENQLS 859

Query: 1263 PVVSRLCASIEGTSPE 1278
              + R+   I G   E
Sbjct: 860  KPLVRIFEPILGEKAE 875


>gi|2581890|gb|AAC47772.1| DNA polymerase alpha [Leishmania gymnodactyli]
          Length = 308

 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 178/338 (52%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLA-KTQLN---KDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K R    P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGIAKGRNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD++          Q    
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYL---------QDFRR 173

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
           G +D   E+                   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 174 GRDDDEEED-------------------GKRRAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRENRNEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKTEKDANSLAL--LEIRQKALKLTANS 308


>gi|406607376|emb|CCH41280.1| DNA polymerase delta catalytic subunit [Wickerhamomyces ciferrii]
          Length = 1108

 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 219/867 (25%), Positives = 372/867 (42%), Gaps = 141/867 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQ--RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             ++  K+ G SW+++ K +  P     + S C+ E+ +D  K +          ++ P+ 
Sbjct: 257  LMIDCKITGMSWITLPKGTYTPVETGLKTSRCQLEVNIDY-KSLISHPPEGEWLKMAPLR 315

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F + +  + I  A+VV             S   +P + + FTV   
Sbjct: 316  ILSFDIECAGRKGIFPEAEHDSIIQIANVVS-----------RSGESRPFVRNVFTV--- 361

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+             GS +   E  ER +L      + K+D DV++G+N + FD
Sbjct: 362  --NSCSPI------------TGSEIFAHED-ERDMLLEWKDFVNKVDPDVIIGYNTTNFD 406

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            L  LL RA+   +    +   GRL   + E          +G+  S  I   I GR+  D
Sbjct: 407  LPYLLDRAKALGLRD--FPYFGRLINIKQEAKDSVFSSKAYGTRESKSIN--IDGRMQLD 462

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   LN+ ++EV  H ++   Q    E+   L  Y   DA+
Sbjct: 463  LLQFIQREYKLRSYTLNSVSAHFLNEQKEEV-QHSIITDLQNGNSETRRRLAVYCLKDAY 521

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L M L+  L  L    ++  ++G  +   L   +  +V   L         +VP      
Sbjct: 522  LPMRLLEKLMCLVNYTEMARVTGVPFSFLLTRGQQIKVISQLFRKCLEIDLVVP------ 575

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                                               N  + G     Y G  V+EP +G Y
Sbjct: 576  -----------------------------------NLQQGGSSDVQYEGATVIEPHRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDF+SLYPSI+  +N+C+T      T+ER           SP G    + +S+ 
Sbjct: 601  DVPIATLDFSSLYPSIMMAHNLCYTTLLNKPTIERLKLEKDKDYTVSPSGDF-FVKTSQR 659

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L+ L+  R+  K  MKT +   K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  KGILPIILEELLSARKKAKKDMKTETDPFKRDVLNGRQLALKISANSVYGFTGATIGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ+   +        EVIYGDTDS+M+  G  D+    
Sbjct: 720  CLAISSSVTAFGRGMIEKTKQEVQDKYTIANGYDYDSEVIYGDTDSVMVKFGYKDLETCM 779

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +    V+ K+   ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ 
Sbjct: 780  KLGEEAADFVSTKFLNPIKLEFEKVYFPYLLINKKRYAG--LYWTNTEKFDKMDTKGIET 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V    L  IL +R     V+S  N + +   D+   +V +++ VITK L
Sbjct: 838  VRRDNCRLVSNVITKILELILEKRD----VKSAENFVKQTIADLLQDRVDMQQLVITKAL 893

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            ++       A  QPHV++A R+++    +  + GD V Y+I    G  S          +
Sbjct: 894  SRSDY----ANKQPHVELADRMRKRDAGSAPTIGDRVAYVIIKTAGNKS--------YEK 941

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE 1297
              D L   +    ID  YY   Q+   ++R+   I G   E+ A  L L  S  ++    
Sbjct: 942  SEDPLYVLEHNLPIDSKYYLENQLANPLTRIFEPILG---EKKAKEL-LTGSHTRTV--- 994

Query: 1298 TMSSDPSSSLLFAVGDEERYRGCE-PL 1323
            TM+S  +  L+  V   E  +GC+ PL
Sbjct: 995  TMASATTGGLMRFVKKVETCKGCKNPL 1021


>gi|344257341|gb|EGW13445.1| DNA polymerase delta catalytic subunit [Cricetulus griseus]
          Length = 1056

 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 177/660 (26%), Positives = 291/660 (44%), Gaps = 130/660 (19%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ              LK    P 
Sbjct: 370  EEDLLQAWANFILAMDPDVITGYNIQNFDLPYLISRAQT-------------LKVDRFPF 416

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            L         G   G+ S I                R+ S+   Q+ +    +D K    
Sbjct: 417  L---------GRVTGLRSNI----------------RDSSFQSRQVGR----RDSK---- 443

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
              V+ M    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L  +R 
Sbjct: 444  --VVSMNWKEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--SRG 499

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q+V+ +                     +++ +Q    G+    V+    ED         
Sbjct: 500  QQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--------- 529

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS----- 934
                       Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R      
Sbjct: 530  -----------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQK 578

Query: 935  ----PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQ 983
                PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ Q LD +
Sbjct: 579  LGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGR 638

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--------NLNL 1035
            Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++        N N 
Sbjct: 639  QLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANA 698

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKY 1094
            +V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL+ KK+Y
Sbjct: 699  KVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRY 758

Query: 1095 AAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
            A +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V    +  
Sbjct: 759  AGLLFSSQPDT-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD-- 815

Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
              V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD V
Sbjct: 816  --VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRV 871

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            PY+I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 872  PYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 924


>gi|2581876|gb|AAC47765.1| DNA polymerase alpha [Leishmania amazonensis]
          Length = 307

 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 178/338 (52%), Gaps = 66/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLA-KTQLN---KDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGIAKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGRD---- 176

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                                  +D   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 177 -----------------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 213

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 214 YPSLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAEGLSTPCLHKCVLPKVIKSL 271

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 272 VDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANS 307


>gi|262367838|pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA
            Monomer Mutant Complex
          Length = 775

 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 179/657 (27%), Positives = 288/657 (43%), Gaps = 120/657 (18%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER  + R +  + + D D++V +N   FD   L  RA+          K+G       
Sbjct: 185  SSEREXIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAE----------KLG------- 227

Query: 698  PKLRKGRTIFGSGASPGIMSC-------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
             KL  GR     G+ P            + GR+  D +      +   +Y+L  + +   
Sbjct: 228  IKLTIGR----DGSEPKXQRIGDXTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIF 283

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-L 809
             K +++V   ++ K +++ E+L  + +Y   DA  + EL      LP   QL+ + G  L
Sbjct: 284  GKPKEKVYADEIAKAWESGENLERVAKYSXEDAKATYEL--GKEFLPXEIQLSRLVGQPL 341

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W  + + +    VE+ LL     +  + P                               
Sbjct: 342  WDVS-RSSTGNLVEWFLLRKAYERNEVAP------------------------------- 369

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                 N  S  ++++  R  +Y GG V EP+KGL++  I+ LDF +LYPSII  +N+   
Sbjct: 370  -----NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNV--- 419

Query: 930  TVERSPDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGL 975
                SPD L             V H       G +P LL +L++ R+ +KT  K T   +
Sbjct: 420  ----SPDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKXKETQDPI 475

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            +   LD +Q+A+KL ANS YG  G++ +R+Y K  AE +T  GR+ +      ++     
Sbjct: 476  EKILLDYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGF 535

Query: 1036 EVIYGDTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKK 1092
            +V+Y DTD +   I  G  +  K KA+  + ++ +N K    LE++ +G YKR   + KK
Sbjct: 536  KVLYIDTDGLYATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKK 593

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            +YA +  + K      VI R GL++VRRDWS ++KE     L  IL     E+ V  +  
Sbjct: 594  RYAVIDEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKE 646

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
             + K    + + ++  EK  I + +T+P   Y      PHV VA +L   G       G 
Sbjct: 647  VIQK----LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGX 698

Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
             + YI+    G        I+ RA   +E      K+  D +YY   Q+ P V R+ 
Sbjct: 699  VIGYIVLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746


>gi|67478112|ref|XP_654477.1| DNA polymerase delta catalytic subunit [Entamoeba histolytica
            HM-1:IMSS]
 gi|56471523|gb|EAL49087.1| DNA polymerase delta catalytic subunit, putative [Entamoeba
            histolytica HM-1:IMSS]
          Length = 1077

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 173/678 (25%), Positives = 297/678 (43%), Gaps = 118/678 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            +D D+  G+NI  FD   LL RA+V +V         +     + +        G   S 
Sbjct: 335  IDVDIFTGYNIMNFDFKYLLERAKVLKVKDFSSFSKLKSSHVSIRQSTFQSKAVGVRESN 394

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESL 772
             +++ + GR+  D F   +   +  SY+L  ++   L   ++EV   D+  + + +++  
Sbjct: 395  ELIN-LEGRIPFDMFQVIQHDYKLRSYTLNFVSSNFLGDQKEEVHYADITTLHEGSMDDR 453

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
              +  Y   D +L ++L+  L  L    ++  ++G      L +G + + +  L  HA  
Sbjct: 454  NRIAVYCLKDTYLPIKLLEKLMSLVNGFEMCRVTGIPLSYLLPRGQQVKVITQLYRHA-N 512

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
            AK   +P    + + TK                  TN                   G  Y
Sbjct: 513  AKNLFIP----FFQRTK------------------TN-------------------GDKY 531

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--------------------- 930
             G  V+ P KG Y   I  LDF+SLYPSI+  +N+C++T                     
Sbjct: 532  VGATVINPIKGFYKVPISTLDFSSLYPSIMISHNLCYSTLIDGIKTRKDIPSIEFLKTSE 591

Query: 931  ------------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
                                    VE SP+G +  + SSK  G+LPE+L+NL+  R+  K
Sbjct: 592  SEEDRKLYDQIMKKLKDKQLNVEDVELSPNGDL-FVKSSKRKGILPEILENLLAARKQAK 650

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              M  A+   KI  L+ +Q ALK++ANS+YG  G    +     +A  +T  GR ++  T
Sbjct: 651  KDMAAATDPFKITVLNGRQLALKVSANSVYGFTGAQIGKLPCMQIASSVTSYGRTMIELT 710

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+           + +V+YGDTDS+M+  G  D+A+A  +  +    V  K+ + + 
Sbjct: 711  KTTVEEKYSKKNGFPWDAQVVYGDTDSVMVKFGTSDLAEAIRLGKEAAVFVTTKFPRPIN 770

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + ++   LL+ KK+YA   + F     ++ ++ KG++ VRRD  LL K V +  L++
Sbjct: 771  LEFEKVFFPYLLISKKRYAG--LYFNRADKWDHVDTKGIETVRRDNCLLVKYVIENVLNK 828

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +   E  +  + N +     D+   ++ L   +I+KTL+K  E Y  A  Q HV++ 
Sbjct: 829  ILLDSDVEGAISFVKNMI----SDLLQNKLDLSMLIISKTLSK--EDY--AGKQAHVELV 880

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +T  + GD +PY+I       S       ++A  P  L   +    ID DYY
Sbjct: 881  KRIRERDKTTTINTGDRIPYVII-----KSTKDAKAYEKAEDP--LYVLENNIPIDFDYY 933

Query: 1257 ASQQIHPVVSRLCASIEG 1274
               Q+   ++R+   I G
Sbjct: 934  IENQLKKPLTRIFKPILG 951


>gi|352683087|ref|YP_004893611.1| DNA polymerase II [Thermoproteus tenax Kra 1]
 gi|350275886|emb|CCC82533.1| DNA polymerase II [Thermoproteus tenax Kra 1]
          Length = 785

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 182/667 (27%), Positives = 313/667 (46%), Gaps = 115/667 (17%)

Query: 625  RNSKAGSNVLCCES-SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
            ++S+    VL  +   +R L+ + +  +   D D+++G+N +GFD   L  RA+   +  
Sbjct: 194  KDSQGREGVLTSDGRDDRPLIRKFVEYIRSFDPDIILGYNSNGFDWPYLAERARRLGLSL 253

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
            S+    G+ ++S          ++G  +       I GR   D +    ++      +L 
Sbjct: 254  SIDRMGGQPQQS----------VYGHWS-------ILGRANLDLYNIIEEVPEIKVKTLD 296

Query: 744  QLAKT--QLNKDRKEVGP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            + A+    + +D + + P H + + +   +    L+ Y   DA  +  L   L  LP   
Sbjct: 297  RAAEYFGVMRRDERVLIPGHRIYEYWDDPKRRPLLLRYSLEDAVSTYGLGEKL--LPFLI 354

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            QL+++SG    +    +   RVE+LL+ +A+RA + + P++                  E
Sbjct: 355  QLSSVSGIPLDQVAAASVGARVEWLLMRYAYRAGE-VAPNR------------------E 395

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            +R  E                          Y G +VLEP+ G+Y   + +LDF S+YPS
Sbjct: 396  ERPYE-------------------------PYKGAIVLEPRPGIYSD-VAVLDFTSMYPS 429

Query: 920  IIQEYNICFTTV-----ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            II  YN+   T         P+G+     V H      TG +P++L +LV+ RR V+  M
Sbjct: 430  IIMRYNLSPDTYLEPGEPDPPEGVHVAPEVGHRFRRAPTGFIPQVLSSLVKLRREVRGAM 489

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
                 + ++ + LD +Q+ALK+ AN+MYG +G+  +R+Y + +AE +T   R IL   + 
Sbjct: 490  LRIDPNSVEYKLLDERQRALKIMANAMYGYMGWIGARWYKREVAESVTAYARSILLDVIK 549

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
              +  L L+VIYGDTDS+ I        K   I  K+I  VNKKY+ +EI L+ +Y+++L
Sbjct: 550  YAR-ALGLDVIYGDTDSLFI--------KNNPIIEKIIDYVNKKYE-IEIKLEKIYRKIL 599

Query: 1088 LLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
              + KK+YA +     DG     I+  G ++VR DW  L+KEV    +  IL  +  ++ 
Sbjct: 600  FTESKKRYAGL---LDDGR----IDIVGFEVVRGDWCELAKEVQLNVIEYILKSQDIKEA 652

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
              ++ N +  + E+++  +V ++  +I KTL K    Y      PH+  A  L++SG+  
Sbjct: 653  KSNVINYVKTIIENLKEYKVNIDDLIIWKTLDKDLNEY--KVMTPHLYAAKLLEKSGFR- 709

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGI-AQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                G T+ Y+I        G  +   A+     ++LK+      IDIDYY  +QI P  
Sbjct: 710  -VHKGMTIGYVII-----RGGDKITYKAKPYILINDLKE------IDIDYYIEKQIIPAA 757

Query: 1266 SRLCASI 1272
             R+   +
Sbjct: 758  LRIAGVV 764


>gi|294660060|ref|XP_002770696.1| DEHA2G22308p [Debaryomyces hansenii CBS767]
 gi|199434442|emb|CAR66020.1| DEHA2G22308p [Debaryomyces hansenii CBS767]
          Length = 1080

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 229/974 (23%), Positives = 405/974 (41%), Gaps = 156/974 (16%)

Query: 337  FYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
            F  LDA E   G N    + FG  + G  H   C V   +      +P G  F+   +  
Sbjct: 97   FQQLDAEETTVGDNSSARF-FGVTREG--HSVLCNVTGFLHYFYVPVPKG-FFKDQHLSG 152

Query: 397  LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
                   +         KL++   G    +      + V+N   +  K R AF + EI  
Sbjct: 153  FINYMNNNYQGVHDIEIKLKESIWGYNKNLKTPFFKVIVNNS-KNISKIRTAFERGEIRY 211

Query: 457  GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFS 514
             EN      +P      P ++  +N   LL          +V  K+ G SW+++   K+ 
Sbjct: 212  -ENL-----FP------PQNVSYDNINYLLR--------LMVDCKITGMSWITLPKGKYE 251

Query: 515  SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDV 569
               +  ++S C+ E ++D  +D+    S      + P+ + + ++     K VF + +  
Sbjct: 252  IVESFVQISTCQIECSIDY-RDLISHPSEGDWLNMAPLRILSFDIECAGRKGVFPEAEHD 310

Query: 570  NEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKA 629
              I  A+VV            A E  +P + + FTV                    +S  
Sbjct: 311  PVIQIANVVS----------KAGE-SRPFVRNVFTV-----------------NTCSSII 342

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSK 688
            GS +    + E  L++     + K+D+DV++G+N + FD+  LL RA+   + S   +S+
Sbjct: 343  GSQIFEHTTEEEMLMHWKEF-IVKVDADVIIGYNTANFDIPYLLDRARALGLKSFPYFSR 401

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +  +K+     +   R     G     +  I GR+  D     +   +  SY+L  ++  
Sbjct: 402  LNNVKQEVKDAVFSSR---AYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYTLNSVSAH 458

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  T E+   L  Y   D++L + L+  L  L    ++  ++
Sbjct: 459  FLGEQKEDVH-HSIISDLQNGTKETRRRLAVYCLKDSYLPLRLLDKLMCLVNYTEMARVT 517

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G  +   L   +  +V   L         ++P+         M  + SN           
Sbjct: 518  GVPFSYLLSRGQQIKVISQLFRKCLEDNIVIPN---------MKSEGSNE---------- 558

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    Y G  V+EP +G YD  I  LDF+SLYPSI+  +N+
Sbjct: 559  -----------------------EYEGATVIEPIRGYYDVPIATLDFSSLYPSIMMAHNL 595

Query: 927  CFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            C+TT+                  +P+G    +   K  G+LP +L  L+  R+  K+ +K
Sbjct: 596  CYTTLLNKQTIKNFNLTEDDYTLTPNGDY-FVKDHKKKGILPTILDELLTARKKAKSDLK 654

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  GRE++  T + V
Sbjct: 655  METDPFKRDVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEV 714

Query: 1030 Q--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +        +  + +VIYGDTDS+M+  G +D+ K   +  +    V+ K+ K ++++ +
Sbjct: 715  EEFYSIKNGHPFDAQVIYGDTDSVMVKFGYEDLEKCMKLGEEAANFVSTKFKKPIKLEFE 774

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L + V    L  IL E
Sbjct: 775  KVYFPYLLINKKRYAG--LYWTSTEKYDKMDTKGIETVRRDNCRLVQNVITKVLEFILQE 832

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  +  V  +  ++     D+   +V L + VITK  +K    +  +  Q HV++A R+K
Sbjct: 833  RDVDKAVRFVKQTIA----DLLQNRVDLSQLVITKAYSK----HDYSAKQAHVELAERMK 884

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    +  + GD V Y+I         SS       +  D L   +    ID+ YY   Q
Sbjct: 885  KRDPGSAPTLGDRVAYVII--------SSSSTKNYEKSEDPLYVLENSLPIDVKYYLENQ 936

Query: 1261 IHPVVSRLCASIEG 1274
            +   + R+   I G
Sbjct: 937  MSNPLMRIFEPILG 950


>gi|449709355|gb|EMD48635.1| DNA polymerase delta catalytic subunit, putative [Entamoeba
            histolytica KU27]
          Length = 1077

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 173/678 (25%), Positives = 297/678 (43%), Gaps = 118/678 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            +D D+  G+NI  FD   LL RA+V +V         +     + +        G   S 
Sbjct: 335  IDVDIFTGYNIMNFDFKYLLERAKVLKVKDFSSFSKLKSSHVSIRQSTFQSKAVGVRESN 394

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESL 772
             +++ + GR+  D F   +   +  SY+L  ++   L   ++EV   D+  + + +++  
Sbjct: 395  ELIN-LEGRIPFDMFQVIQHDYKLRSYTLNFVSSNFLGDQKEEVHYADITTLHEGSMDDR 453

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
              +  Y   D +L ++L+  L  L    ++  ++G      L +G + + +  L  HA  
Sbjct: 454  NRIAVYCLKDTYLPIKLLEKLMSLVNGFEMCRVTGIPLSYLLPRGQQVKVITQLYRHA-N 512

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
            AK   +P    + + TK                  TN                   G  Y
Sbjct: 513  AKNLFIP----FFQRTK------------------TN-------------------GDKY 531

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--------------------- 930
             G  V+ P KG Y   I  LDF+SLYPSI+  +N+C++T                     
Sbjct: 532  VGATVINPIKGFYKVPISTLDFSSLYPSIMISHNLCYSTLIDGIKTRKDIPSIEFLKTSE 591

Query: 931  ------------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
                                    VE SP+G +  + SSK  G+LPE+L+NL+  R+  K
Sbjct: 592  SEEDRKLYDQIMKKLKDKQLNVEDVELSPNGDL-FVKSSKRKGILPEILENLLAARKQAK 650

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              M  A+   KI  L+ +Q ALK++ANS+YG  G    +     +A  +T  GR ++  T
Sbjct: 651  KDMAAATDPFKITVLNGRQLALKVSANSVYGFTGAQIGKLPCMQIASSVTSYGRTMIELT 710

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+           + +V+YGDTDS+M+  G  D+A+A  +  +    V  K+ + + 
Sbjct: 711  KTTVEEKYSKKNGFPWDAQVVYGDTDSVMVKFGTSDLAEAIRLGKEAAVFVTTKFPRPIN 770

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + ++   LL+ KK+YA   + F     ++ ++ KG++ VRRD  LL K V +  L++
Sbjct: 771  LEFEKVFFPYLLISKKRYAG--LYFNRADKWDHVDTKGIETVRRDNCLLVKYVIENVLNK 828

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +   E  +  + N +     D+   ++ L   +I+KTL+K  E Y  A  Q HV++ 
Sbjct: 829  ILLDSDVEGAISFVKNMI----SDLLQNKLDLSMLIISKTLSK--EDY--AGKQAHVELV 880

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +T  + GD +PY+I       S       ++A  P  L   +    ID DYY
Sbjct: 881  KRIRERDKTTTINTGDRIPYVII-----KSTKDAKAYEKAEDP--LYVLENNIPIDFDYY 933

Query: 1257 ASQQIHPVVSRLCASIEG 1274
               Q+   ++R+   I G
Sbjct: 934  IENQLKKPLTRIFKPILG 951


>gi|389582644|dbj|GAB65381.1| DNA polymerase delta catalytic subunit [Plasmodium cynomolgi strain
            B]
          Length = 1159

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 206/803 (25%), Positives = 360/803 (44%), Gaps = 137/803 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            +++ +K+ G SWL    + F   P  +++S C +EI +          S +H+  +P   
Sbjct: 310  YIIDKKITGSSWLLCKNNHFHIRPKHKKISNCSFEIDI----------SYEHIEPMP--- 356

Query: 554  VTAINLKTVFNKRQDVNEI--VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
                    + N+ Q + +I  VS  + C    K+D          P  +   + +    G
Sbjct: 357  --------LENEYQQIPKIRIVSFDIEC---IKLDGKGFPEAKNDP--IIQISSILYFQG 403

Query: 612  GIFPMG----FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
               P+G    F     +  S  GSNV+   S E+ LL+     + +LD D L G+NI  F
Sbjct: 404  D--PIGKCSKFIFTLKECASIPGSNVIWF-SDEKTLLDAWSEFITRLDPDFLTGYNIINF 460

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
            DL  +L+R     +       +GR+K   S + +       FG+  +  I   I GR+  
Sbjct: 461  DLPYILNRGTALNLKK--LKMLGRIKNISSVVKESSFSSKQFGTHETKEIN--INGRIQF 516

Query: 726  DTF-LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETD 782
            D + L  RD  +  SY+L  ++  +  K++KE   + ++   Q  + ES   +  Y   D
Sbjct: 517  DVYDLIKRDY-KLKSYTLNYVS-FEFLKEQKEDVHYSIMNDLQNESPESRKRIATYCIKD 574

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
              L + L+  L  +    ++  ++G  +   L   +  +V   L    +   Y++P   T
Sbjct: 575  GILPLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYVIPS--T 632

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
            Y+K     K                                       Y G  VLEP KG
Sbjct: 633  YIKSGSNEK---------------------------------------YEGATVLEPIKG 653

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----------------GLVPHLPSSK 946
             Y + I  LDF SLYPSI+  +N+C++T+ ++                  G +  +  S 
Sbjct: 654  YYIEPISTLDFASLYPSIMIAHNLCYSTLVKNNSEIEGLKQEEVTSIQGKGNIKFVKRSV 713

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQALKLTANSMYGCLG-FSNS 1003
              G+LP +++ L+  R+ VK  +K     KI +  L+ +Q ALK++ANS+YG  G  S  
Sbjct: 714  KKGILPLIVEELIDARKKVKLLIKNEQN-KITKMVLNGRQLALKISANSVYGYTGAASGG 772

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSGIDDIA 1055
            +     +A  IT  GR ++  T + V+           N  V+YGDTDS+M+  G + IA
Sbjct: 773  QLPCLEVAVSITTLGRSMIDKTKETVEKYYSRSNGFEYNSTVVYGDTDSVMVKFGTNSIA 832

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A A+     Q ++K++   ++++ + +Y   LLL KK+YA   + +     ++ ++ KG
Sbjct: 833  EAMALGKDAAQRISKEFLHPIKLEFEKVYCPYLLLNKKRYAG--LLYTTPEKHDKMDCKG 890

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD+ +L +++ +  L+++L E++    +E   + +    +D+ +  + +   V+T
Sbjct: 891  IETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKI----KDLLTNNIDMSLLVVT 946

Query: 1175 KTLTKPPEAYPDAKNQ-PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            K+L K      D + + PHV++A +LKQ   +T  + GD V YII   +G       G A
Sbjct: 947  KSLGK-----TDYETRLPHVELAKKLKQRDSATAPNVGDRVSYIIV--KGVK-----GQA 994

Query: 1234 QRARHPDELKKGDGKWMIDIDYY 1256
            Q  R  D L   D    ID ++Y
Sbjct: 995  QYERAEDPLYVLDNNLAIDYNHY 1017


>gi|2581902|gb|AAC47778.1| DNA polymerase alpha [Leishmania mexicana]
          Length = 308

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 180/338 (53%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLA-KTQLN---KDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGIAKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGR----- 175

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                            D+D    +   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 176 -----------------DDD----EEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAEGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANS 308


>gi|407045124|gb|EKE43021.1| DNA polymerase delta catalytic subunit, putative [Entamoeba nuttalli
            P19]
          Length = 1077

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 173/678 (25%), Positives = 297/678 (43%), Gaps = 118/678 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            +D D+  G+NI  FD   LL RA+V +V         +     + +        G   S 
Sbjct: 335  IDVDIFTGYNIMNFDFKYLLERAKVLKVKDFSSFSKLKSSHVSIRQSTFQSKAVGVRESN 394

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESL 772
             +++ + GR+  D F   +   +  SY+L  ++   L   ++EV   D+  + + +++  
Sbjct: 395  ELIN-LEGRIPFDMFQVIQHDYKLRSYTLNFVSSNFLGDQKEEVHYADITTLHEGSMDDR 453

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
              +  Y   D +L ++L+  L  L    ++  ++G      L +G + + +  L  HA  
Sbjct: 454  NRIAVYCLKDTYLPIKLLEKLMSLVNGFEMCRVTGIPLSYLLPRGQQVKVITQLYRHA-N 512

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
            AK   +P    + + TK                  TN                   G  Y
Sbjct: 513  AKNLFIP----FFQRTK------------------TN-------------------GDKY 531

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--------------------- 930
             G  V+ P KG Y   I  LDF+SLYPSI+  +N+C++T                     
Sbjct: 532  VGATVINPIKGFYKVPISTLDFSSLYPSIMISHNLCYSTLIDGIKTRKDVPSIEFLKTSE 591

Query: 931  ------------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
                                    VE SP+G +  + SSK  G+LPE+L+NL+  R+  K
Sbjct: 592  SEEDRKLYDQIMKKLKDKQLNVEDVELSPNGDL-FVKSSKRKGILPEILENLLAARKQAK 650

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              M  A+   KI  L+ +Q ALK++ANS+YG  G    +     +A  +T  GR ++  T
Sbjct: 651  KDMAAATDPFKITVLNGRQLALKVSANSVYGFTGAQIGKLPCMQIASSVTSYGRTMIELT 710

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+           + +V+YGDTDS+M+  G  D+A+A  +  +    V  K+ + + 
Sbjct: 711  KTTVEEKYSKKNGFPWDAQVVYGDTDSVMVKFGTSDLAEAIRLGKEAAVFVTTKFPRPIN 770

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + ++   LL+ KK+YA   + F     ++ ++ KG++ VRRD  LL K V +  L++
Sbjct: 771  LEFEKVFFPYLLISKKRYAG--LYFNRADKWDHVDTKGIETVRRDNCLLVKYVIENVLNK 828

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +   E  +  + N +     D+   ++ L   +I+KTL+K  E Y  A  Q HV++ 
Sbjct: 829  ILLDSDVEGAISFVKNMI----SDLLQNKLDLSMLIISKTLSK--EDY--AGKQAHVELV 880

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +T  + GD +PY+I       S       ++A  P  L   +    ID DYY
Sbjct: 881  KRIRERDKTTTINTGDRIPYVII-----KSTKDAKAYEKAEDP--LYVLENNIPIDFDYY 933

Query: 1257 ASQQIHPVVSRLCASIEG 1274
               Q+   ++R+   I G
Sbjct: 934  IENQLKKPLTRIFKPILG 951


>gi|324120764|dbj|BAJ78773.1| DNA polymerase delta catalytic subunit [Stenopsyche marmorata]
          Length = 1000

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 177/681 (25%), Positives = 306/681 (44%), Gaps = 94/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWS 687
             GS+VL  ++ E+ +L +    + ++D D++ G+NI+ FD   L+ RA   +V      S
Sbjct: 261  VGSHVLSFQT-EQEMLCKWSEFIREVDPDIITGYNINNFDFPYLIDRAHHLKVKDFEFLS 319

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
            +I  ++     K+ + + +   G        I GR+  D  L      +  SY+L  ++ 
Sbjct: 320  RIKDIRSVIRNKVLQSKQM---GRRENKSMNIEGRVPFDLLLVLVRDYKLRSYTLNAVSY 376

Query: 748  TQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L K++KE   H V+   Q  + ++   L  Y   DA+L + L+  L  +    ++  +
Sbjct: 377  HFL-KEQKEDVHHSVITDMQNESDQTRRRLAMYCLKDAYLPLRLLNKLMCIINYMEMARV 435

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G      L   +  +V   LL   +  KYI+P                + G +D+    
Sbjct: 436  TGVPLACLLNRGQQIKVVSQLLRKAKTSKYIMP-------------AYHSQGSDDQ---- 478

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     Y G  V++P KG Y   I  LDF SLYPSI+  +N
Sbjct: 479  -------------------------YEGATVIDPLKGYYSNPIATLDFASLYPSIMMAHN 513

Query: 926  ICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            +C+TT                V R+P   +  + S+   G+LPE+L++L+  R+  K  +
Sbjct: 514  LCYTTLLPNHMKEKLNITDDQVTRTPSNNM-FVKSTVRKGLLPEILESLLGARKKAKADL 572

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +   K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 573  KEETDPFKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTSYGRSMIEQTKQE 632

Query: 1029 VQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+           +  VIYGDTDS+M++ G   + ++  +     + V+ K+ K ++++ 
Sbjct: 633  VEQRYTKANGYDEDAIVIYGDTDSVMVNFGTTSLEESMKLGRNAAEFVSSKFIKPIKLEF 692

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            +  Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   +   CL ++L 
Sbjct: 693  EKCYFPYLLINKKRYAGLYFTKPDK--YDKMDCKGIETVRRDNSPLVSNLMSTCLQKVLI 750

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R  +  VE       ++  D+   ++ + + VITK L+K       A  Q HV++A ++
Sbjct: 751  DRDPKGAVEYAK----QIIADLLCNRIDISQLVITKELSKSDY----AAKQAHVELAAKM 802

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+    T    GD VPY++C     S+  +V    +A  P  +   +    ID DYY   
Sbjct: 803  KKRDPGTAPKLGDRVPYVLC-----SAAKNVPAYMKAEDP--IYVLENSIPIDFDYYLHN 855

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + RL   I G   E +
Sbjct: 856  QLSKPLLRLFEPIYGDKAESM 876


>gi|324120710|dbj|BAJ78746.1| DNA polymerase delta catalytic subunit [Karoophasma biedouwense]
          Length = 992

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 179/678 (26%), Positives = 305/678 (44%), Gaps = 94/678 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL     E  +L +    + ++D DV  G+NI+ FD   L++RA+   V +  ++ 
Sbjct: 257  VGCQVLS-HDKETGMLEKWADFVREVDPDVFTGYNINNFDFTYLINRAKHLNVKN--FTY 313

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
            +GR+K        +       G          GR+  D  L    LLR+    SY+L  +
Sbjct: 314  LGRIKNISSVIKEQMLQSKQMGRRENKHINFEGRVSFDLLLV---LLRDYKLRSYTLNSV 370

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V PH+++   Q  T  +   L  Y   DA+L + L+  L       ++ 
Sbjct: 371  SFHFLQEQKEDV-PHNIITDLQHGTDVTRRRLAVYCLKDAYLPLRLLDKLMCFINYMEMA 429

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   + + Y++P               +  G      
Sbjct: 430  RVTGVPLSCLLTRGQQIKVVSQLLRKAKDRGYLIP---------------AYSGAP---- 470

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                 +D  F+                  G  V+EPKKG Y   I  LDF+SLYPSI+  
Sbjct: 471  -----QDEQFE------------------GATVIEPKKGYYADPIATLDFSSLYPSIMMA 507

Query: 924  YNICFTTVER--SPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +N+C+TT+ R  + D L P            + +S   G+LPE+L+NL+  R+  K  +K
Sbjct: 508  HNLCYTTLLRQGAKDSLTPDQYTKTPASNLFVKASVRKGLLPEILENLLAARKKAKADLK 567

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V
Sbjct: 568  LETDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRVMIEQTKQEV 627

Query: 1030 QNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            +   N+         VIYGDTDS+MI  G+  + +A ++  +    V+ K+   ++++ +
Sbjct: 628  EQQFNVANGYQHDAVVIYGDTDSVMIKFGVKSLEEAMSLGREAAAFVSAKFVHPIKLEFE 687

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   + + CL ++L  
Sbjct: 688  KVYFPYLLINKKRYAGLYFTKPDH--YDKMDCKGIETVRRDNCPLVANMMNTCLQKLLIN 745

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  +  V    N   +V  D+   ++ + + VITK L K       A  Q HV++A ++K
Sbjct: 746  RDPDGAV----NYAKQVISDLLCNRIDISQLVITKELAKSDY----AAKQAHVELAAKMK 797

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    T    GD VPY+I      ++  +    Q+A  P  + + +    ID  YY   Q
Sbjct: 798  KRDAGTAPKLGDRVPYVI-----IAAAKNTPAYQKAEDPIYVLENNIP--IDSSYYLDNQ 850

Query: 1261 IHPVVSRLCASIEGTSPE 1278
            +   + R+ + I G   E
Sbjct: 851  LSKPLLRIFSPILGDKAE 868


>gi|410982338|ref|XP_003997514.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 3 [Felis
            catus]
          Length = 1124

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 183/680 (26%), Positives = 301/680 (44%), Gaps = 110/680 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V S  +  +GR+       
Sbjct: 374  EEELLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVES--FPFLGRVSGLRSTI 431

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKE 756
                     +G     +  + GR+  D     + LLRE    SY+L  ++   L + +++
Sbjct: 432  RDSSFQSKQTGRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKED 488

Query: 757  VGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
            V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  L
Sbjct: 489  VQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL 547

Query: 815  -QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
             +G + + V  LL  A R              E  +       GVED             
Sbjct: 548  TRGQQVKVVSQLLRQAMR--------------EGLLMPVVKTEGVED------------- 580

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGL-------------YDKYILLLDFNSLYPSI 920
                             Y G  V+EP KG              YD  I  LDF+SLYPSI
Sbjct: 581  -----------------YTGATVIEPLKGYDPVSGWGCLPPRYYDVPIATLDFSSLYPSI 623

Query: 921  IQEYNICFTTVER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            +  +N+C+TT+ R                +P G    + +S   G+LP++L+NL+  R+ 
Sbjct: 624  MMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKR 682

Query: 965  VKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  + K    L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++ 
Sbjct: 683  AKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIE 742

Query: 1024 STVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T  LV++   +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   
Sbjct: 743  KTKQLVESKYTVENGYGTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPP 802

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            + ++ + +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L
Sbjct: 803  IRLEFEKVYFPYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASL 861

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
             ++L +R     V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV+
Sbjct: 862  RRLLIDRDPAGAVAHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVE 915

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+++    +  S GD VPY+I        G++ G+A   +  D L   +    ID  
Sbjct: 916  LAERMRKRDPGSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQ 968

Query: 1255 YYASQQIHPVVSRLCASIEG 1274
            YY  QQ+   + R+   I G
Sbjct: 969  YYLEQQLAKPLLRIFEPILG 988


>gi|225555953|gb|EEH04243.1| DNA polymerase delta catalytic subunit [Ajellomyces capsulatus
            G186AR]
          Length = 1111

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 201/823 (24%), Positives = 356/823 (43%), Gaps = 145/823 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +R+S C+ E T+   +D+    +    A++ P+ 
Sbjct: 256  FMIDTGISGMSWVEAPASKYQILPMVERMSNCQIEATIHY-RDLIAHPNDGEWAKMAPLR 314

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +              KP + + F +   
Sbjct: 315  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRYGES-----------KPFIRNVFVL--- 360

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D  S   +  L    +E  +L      L ++D DV++G+NI+ FD
Sbjct: 361  ---------------DTCSLIVNTQLLEFDTEEKMLMAWKNFLVEVDPDVIIGYNIANFD 405

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+  +      WS++  +        R G   F S   G      + I+GR+ 
Sbjct: 406  FPYLLKRAEHLKCSGFHFWSRLKHIPS------RVGDARFSSKQIGNRESKSTNISGRIQ 459

Query: 725  CDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  SY+L  +    L + +++V    + ++F  + +S   L  Y   
Sbjct: 460  LDLLQLVQRDYQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGSPDSRRRLAVYCLK 517

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      ++ ++P 
Sbjct: 518  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQQLVIP- 574

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                                            N  N+++            Y G  V+EP
Sbjct: 575  --------------------------------NLRNESTSEQ---------YEGATVIEP 593

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHL 942
             +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G     
Sbjct: 594  IRDFYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIDAHQMKEGEDYIVTPNG--DRF 651

Query: 943  PSSKT-TGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
             +SK   G+L ++L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  G 
Sbjct: 652  CTSKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLTGA 711

Query: 1001 SNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGID 1052
            +  +    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  G+ 
Sbjct: 712  TVGKLPCLPIASSTTSYGRQMIEKTKEEVEAKYTIANGYSHDAKVVYGDTDSVMVKFGMK 771

Query: 1053 DIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIE 1111
            D+A+A  +  +    V+ K+   ++++ + +Y   LL+ KK+YA +     D   Y+ ++
Sbjct: 772  DLAEAMKLGQEAADYVSSKFINPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KYDKMD 829

Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
             KG++ VRRD   + + V +  L +IL +R  +     + +++     D+   ++ + K 
Sbjct: 830  TKGIETVRRDNCRMVQTVIETVLRKILIDRDVDGAQSYVKDTI----SDLLQNKIDMSKL 885

Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G       G
Sbjct: 886  VITKALSKKDY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVIVKGAG-------G 934

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  SKNYEKSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 977


>gi|425777959|gb|EKV16108.1| DNA polymerase [Penicillium digitatum Pd1]
 gi|425780068|gb|EKV18089.1| DNA polymerase [Penicillium digitatum PHI26]
          Length = 1104

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 174/667 (26%), Positives = 305/667 (45%), Gaps = 97/667 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  +LN     + K+D DV++G+NI+ FD   LL RA+  +      W+++   K     
Sbjct: 369  EEKMLNAWRDFVEKVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTRLKGFKTEAKD 428

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKE 756
                 + +   G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++
Sbjct: 429  ANFSSKQM---GNRDTKATNTNGRIQLDLLQLVQRDHQLR--SYTLNSVSYEFLKEQKED 483

Query: 757  VGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            V    + ++F  T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L 
Sbjct: 484  VHHTMITELFNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL- 542

Query: 816  GARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
             +R Q+V+++  L    R ++ ++P+                                  
Sbjct: 543  -SRGQQVKFISQLFRKAREQQLVIPNS--------------------------------- 568

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--- 930
                      K +    Y G  V+EPK+G Y   +  LDF SLYPSIIQ +N+C+TT   
Sbjct: 569  ----------KPQDEQDYEGATVIEPKRGYYGVPVATLDFASLYPSIIQAHNLCYTTLLN 618

Query: 931  --------VERSPDGLV-PHLPSSKTT----GVLPELLKNLVQRRRMVKTWMKTAS-GLK 976
                    +++  D +V P+     TT    G+L ++L+ L+  R+  K  + T +   K
Sbjct: 619  KSSVEKLNLKKDDDYIVTPNGDMFCTTKVRKGLLSQILEELLSARKRAKRELATETDSFK 678

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL- 1035
               L+ +Q ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    + 
Sbjct: 679  KAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIA 738

Query: 1036 -------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRML 1087
                   EVIYGDTDS+M+  G+ ++A+A  +  +    V+ K+   ++++ + +Y   L
Sbjct: 739  NGYSHDAEVIYGDTDSVMVKFGVTELAEAMRLGQEAADFVSSKFIAPIKLEFEKVYFPYL 798

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +     D   ++ ++ KG++ VRRD  L+ + V +  L++IL +R  +   
Sbjct: 799  LINKKRYAGLYWTNPD--KHDKMDTKGIETVRRDNCLMVQNVIETVLNKILIDRDLDGAQ 856

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + +  ++     D+   ++ + K VITK L+K  E Y  A  Q HV++A R+ +    + 
Sbjct: 857  DYVKATI----SDLLQNKIDMSKLVITKALSKRKEDY--AGKQAHVELAERMHKRDAGSA 910

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             + GD V Y++      S G         R  D +   +    ID  YY   Q+   ++R
Sbjct: 911  PTLGDRVAYVMIKGSSDSKGYE-------RAEDPIFVLENNIPIDTKYYLDNQLTNPLNR 963

Query: 1268 LCASIEG 1274
            +   I G
Sbjct: 964  IFEPILG 970


>gi|342874671|gb|EGU76649.1| hypothetical protein FOXB_12838 [Fusarium oxysporum Fo5176]
          Length = 1054

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 181/691 (26%), Positives = 310/691 (44%), Gaps = 105/691 (15%)

Query: 624  DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
            + +S   + +L  E  E+ +L+     L + D D++ G+NIS FD   LL RA+  +V  
Sbjct: 304  ETSSIVATQILEYEKEEK-MLSDWQKFLIRADPDIITGYNISNFDFPYLLDRAKHLKVSG 362

Query: 684  -SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVS 739
               W++I  ++       +   T F S   G      +   GRL  D     +      S
Sbjct: 363  FEYWTRIPSMQS------KAKETNFSSKQMGNRDTKATNTNGRLQLDLLQLIQRDHHLRS 416

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPL 798
            Y+L  ++   L + +++V    + ++F  T ES   L  Y   DA+L   LM  LS L  
Sbjct: 417  YTLNSVSANFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKLSCLEN 476

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
              ++  ++G  +   L  +R Q+V+++  L      +K ++P                  
Sbjct: 477  YTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQKLVIP------------------ 516

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                           N  ++ S            Y G  V+EP +G YD  I  LDF SL
Sbjct: 517  ---------------NLKSEASDEQ---------YEGATVIEPTRGYYDVPIATLDFASL 552

Query: 917  YPSIIQEYNICFTT-----------VERSPDGLVPHLPSSKT-------TGVLPELLKNL 958
            YPSI+Q +N+C+TT           +++  D +V   P+  T        G+L ++L+ L
Sbjct: 553  YPSIMQAHNLCYTTLVSKKAIEAFNLKKDEDYIV--TPNGDTFVTIKQRKGLLAQILEEL 610

Query: 959  VQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017
            +  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +A   T  
Sbjct: 611  LAARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEIASSTTSF 670

Query: 1018 GREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069
            GR+++  T + V+N  N+        +VIYGDTDS+MI  G  D+ +A  +  +  + V+
Sbjct: 671  GRKMIEKTKEEVENRYNIANGYSHDAQVIYGDTDSVMIKFGTKDLQEAMKLGEEASKYVS 730

Query: 1070 KKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
             K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL + 
Sbjct: 731  AKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCLLVQT 788

Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
            V +  L  IL ++  +   E +  ++     D+   +V + K VITK LTK  + Y  A 
Sbjct: 789  VIEKVLRMILIDQDVQGAQEYVKETIA----DLLQNKVDMSKLVITKALTK--DDY--AA 840

Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
             Q HV++A R+K+    +    GD V Y++            G     +  D +   +  
Sbjct: 841  KQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------RGPAGAKNFEKSEDPIYVLEHN 893

Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
              ID  YY   Q+   + R+   I G +  R
Sbjct: 894  VPIDTRYYLDNQLAKPLGRIFEPILGETKAR 924


>gi|198429892|ref|XP_002125320.1| PREDICTED: similar to Polymerase (DNA directed), delta 1, catalytic
            subunit [Ciona intestinalis]
          Length = 1064

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 174/669 (26%), Positives = 307/669 (45%), Gaps = 99/669 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            +E  LL      +  +D DV+ G+NI  FDL  L++RA   +V +  +  +GR+K+S + 
Sbjct: 333  TEEGLLQAFSDFVRAVDPDVISGYNIQNFDLPYLINRAAHLKVAN--FPFLGRIKKS-VT 389

Query: 699  KLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
            K+++  T F S   G+       + GR+  D F+    LLRE    SY+L  ++   L +
Sbjct: 390  KIKE--TKFQSKQMGSREMKQINMEGRVQFDVFVA---LLREQKLRSYTLNAVSFHFLGE 444

Query: 753  DRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++   Q    +S   L  Y   DA L + L+  L  +    ++  ++G   
Sbjct: 445  QKEDVH-HSIITELQHGNAQSRRRLAVYCLKDALLPIRLLDKLMFIINYMEMARVTGVPL 503

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
               L   ++ +V   LL   +    ++P                        V   +N+D
Sbjct: 504  SYLLTRGQSIKVISQLLRKTKEADLLMP------------------------VIPTSNDD 539

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                                + G  V++P KG Y++ I  LDF+SLYPSI+Q +N+C+TT
Sbjct: 540  E-------------------FTGATVIDPIKGYYNQPITTLDFSSLYPSIMQAHNLCYTT 580

Query: 931  VER---------SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG- 974
            + R          P+  +        + +S   G+LP +L++L+  R   K  MK     
Sbjct: 581  LLRKNSKEKDLLGPEDFIKTPSGDYFVKASVRKGLLPGILESLLTARTNAKALMKVEKDP 640

Query: 975  LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
             K   LD +Q ALK++ NS+YG  G    +     ++  +T  GR ++  T   V+    
Sbjct: 641  FKRSVLDGRQLALKISCNSVYGFTGAQIGKLPCLEISGSVTAFGRMMIEQTKQHVETQYT 700

Query: 1035 LE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKR 1085
            +E        VIYGDTDS+M+  G+  +A++  +  +    V+ K+ K ++++ + +Y  
Sbjct: 701  VENGYSHDAKVIYGDTDSVMVKFGVSTVAESMVLGKEAASFVSDKFVKPIKLEFEKVYYP 760

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
             LL+ KK+YA +       + ++ I+ KG++ VRRD + L+  +   CL ++L  R  + 
Sbjct: 761  YLLINKKRYAGLYFSSSSEV-HDKIDCKGIETVRRDNAPLTANLISTCLEKLLVGRDPDG 819

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYS 1205
             V        +V  D+   ++ + + +ITK LTK  E Y  A  Q HV++A R+K+    
Sbjct: 820  AVAHAK----EVISDLLCNRIDISQLIITKELTKTKEEY--AAKQAHVELAERMKKRDAG 873

Query: 1206 TGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
            +    GD VP++I C        + G A   +  D +   +    ID ++Y   Q+   +
Sbjct: 874  SAPQLGDRVPFVIVC-------GAKGQAAYLKSEDPIYVLENNLQIDTEHYLKHQLTQPL 926

Query: 1266 SRLCASIEG 1274
             R+   + G
Sbjct: 927  LRVFEPVLG 935


>gi|401427880|ref|XP_003878423.1| putative DNA polymerase delta catalytic subunit [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322494671|emb|CBZ29973.1| putative DNA polymerase delta catalytic subunit [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1032

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 202/808 (25%), Positives = 354/808 (43%), Gaps = 126/808 (15%)

Query: 496  FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            FLV   + G +WL+++  KF +C A  + S C+ E+   S +D++          + P  
Sbjct: 182  FLVDNDIGGSNWLTLTYGKFFACSA--KTSTCQIEVAC-SHEDVQNHEPLGDYLSIAPFR 238

Query: 554  VTAINL-----KTVFNKRQD--VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVV 606
            + +I++     K +F + +   V +I +  V   H+++            P   + FT+ 
Sbjct: 239  ILSIDIECQGRKGLFPEPEHDPVIQIANHCVEYGHESE------------PLTKTIFTL- 285

Query: 607  RKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISG 666
                    P+            AG+ VL  E+    LL      +  LD D+L G+NI  
Sbjct: 286  ----KSCAPI------------AGAQVLSYETEAEMLLAWATF-MKALDPDILTGYNICN 328

Query: 667  FDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            FD   LL+RA   +  S  +   GR          K       G        + GR++ D
Sbjct: 329  FDFPYLLNRAAALKA-SDAFHYWGRQVHERTVARDKKFQSKQMGNREYTELTLEGRIIMD 387

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
              +  +   +  SYSL  +++  L + +++V  H ++   Q    E+   L  Y   DA+
Sbjct: 388  AMVVIQRDYKLRSYSLNSVSQNFLGEQKEDVH-HSIISDLQHGDEETRRRLAVYCLKDAF 446

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L ++L+  L  +    ++  ++G   G  L+  +  +V  +LL   + KK +VP      
Sbjct: 447  LPVKLLDRLMCIVNNVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVP------ 500

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                              VE     D                RG  Y G  V++P KG Y
Sbjct: 501  -----------------TVEYTGGSD----------------RG--YEGATVIDPIKGFY 525

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPH--LPSSKTT----------GVL 951
            +  +  LDF SLYPSII  +N+C++T+ R  D  L P   L  S T+          G+L
Sbjct: 526  NCPVATLDFASLYPSIIIAHNLCYSTLVRPADARLYPEDSLDRSPTSDIFVKKEVFPGIL 585

Query: 952  PELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            PE+L++L+  R+  +  MK    + L+ + L+ +Q ALK++ANS+YG  G    +     
Sbjct: 586  PEVLQDLLAARKHARAMMKDVPMNSLEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLE 645

Query: 1010 LAELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIH-------SGIDDIAKAKAIA 1061
            ++  +T  GR+++  T +LV+       V+YGDTDS+M+        S  + +  A    
Sbjct: 646  ISASVTAYGRQMIDRTKNLVEELYPGARVLYGDTDSVMVKCVTNEKASDKERLQAAMDFG 705

Query: 1062 GKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
             +  ++V+  +   ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRR
Sbjct: 706  IEAAEKVSSNFLNPIKLEFEKVYFPYLLMNKKRYAGLLWTNTDR--FDKLDAKGIETVRR 763

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            D   L   +    L++IL  RS E  VE +  ++     D+   ++ +   VITK  +K 
Sbjct: 764  DNCPLVARMVSGVLNRILIHRSVESAVEFVKGTI----SDLLLNRLDISNLVITKAFSKA 819

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
             + Y  A  Q H+ +  R++Q   ++  + GD V Y+I         ++ G     R  D
Sbjct: 820  EDEYAGA--QAHIALVERMRQRDPASAPTIGDRVAYVII-------KAAKGAKAYERSED 870

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
             +   D    ID  YY   Q+ P + R+
Sbjct: 871  PIYVLDNNIPIDTQYYLEHQLAPPILRV 898


>gi|170574522|ref|XP_001892851.1| DNA polymerase delta catalytic subunit [Brugia malayi]
 gi|158601393|gb|EDP38315.1| DNA polymerase delta catalytic subunit, putative [Brugia malayi]
          Length = 1084

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 311/685 (45%), Gaps = 99/685 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS ++  +S E  LLN+    +  +D D++ G+NI  FD   ++ RA+  ++ S   + +
Sbjct: 341  GSEIIVSKSEEE-LLNKWAEFVRTVDPDLITGYNIQNFDFPYIVERARALKIESRA-TML 398

Query: 690  GRLKRS-----EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
            GR+  S     EMP   K       G     ++ + GR++ D         +  SYSL  
Sbjct: 399  GRIPNSLSKVREMPLSSKQM-----GNRTNKITNVEGRVVFDVIQVVLRDYKLRSYSLNS 453

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  + ++   Q   +     L  Y   DA+L ++L+  L  +    ++
Sbjct: 454  VSYHFLCEQKEDVD-YSMIADLQNGNAFTRRRLAIYCMKDAYLPLKLLQKLMSIINYIEM 512

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   +L   ++  + +P                        
Sbjct: 513  ARVTGVPLDYLLSRGQQVKVMSQILRKAKSLHFFLP------------------------ 548

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
            V ++   D     DT             Y G  V++P +G Y+  I  LDF SLYPSI+ 
Sbjct: 549  VIDIVQAD-----DT-------------YEGATVIDPIRGFYNTPIATLDFASLYPSIMI 590

Query: 923  EYNICFTTVERS-------PDGLVPHLPSSK-------TTGVLPELLKNLVQRRRMVKTW 968
             +N+C+TT+ R         D  V   PS+          G+LP++L++L+  R+  K  
Sbjct: 591  AHNLCYTTLIRGSNASHNLSDSDVEVTPSNNRFVKSNIRRGLLPQVLEDLLNARKQAKND 650

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL---RS 1024
            +K      +   L+ +Q ALK++ANS+YG  G S  +     +++ +T  GR+++   +S
Sbjct: 651  LKNEQDPFRRMVLNGRQLALKISANSVYGFTGASVGKLPCLEISQSVTAYGRQMIDLTKS 710

Query: 1025 TVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
             V+ +     L        +VIYGDTDS+M+  G+ D+  A  +      EV+KK+   +
Sbjct: 711  AVEQIYKEGYLDGKCPCDAQVIYGDTDSVMVKFGVKDVKAAMELGLHAATEVSKKFIPPI 770

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + F     ++ I+ KGL+ VRRD   L  +V   CL 
Sbjct: 771  KLEFEKVYSPFLLINKKRYAG--LYFTRPEKHDKIDCKGLETVRRDNCPLVSKVLSTCLE 828

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            ++L E      +E       KV  D+   ++ + + +ITK LT+   AY  A  Q HV +
Sbjct: 829  KMLLEGDATSALEHAK----KVISDLLCNRIDISELIITKELTRSSNAY--AAKQAHVVL 882

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+++    +    GD VPY+I      + G  V   ++A  P  + + +    ID  Y
Sbjct: 883  AERMRERDSGSAPRLGDRVPYVI-----VAKGQKVPAYEKAEDPIYVLQNNIP--IDTAY 935

Query: 1256 YASQQIHPVVSRLCASIEGTSPERL 1280
            Y   Q+   ++R+   I G   E +
Sbjct: 936  YLENQLAKPLARIFEPILGDKAESI 960


>gi|2581900|gb|AAC47777.1| DNA polymerase alpha [Leishmania major]
          Length = 307

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 177/339 (52%), Gaps = 68/339 (20%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K        
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRG------ 174

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRK-GKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                 H+D  + GKR   Y GG+VL+PK GLY  YILLLDFNS
Sbjct: 175 ----------------------HDDEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNS 212

Query: 916 LYPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKN 957
           LYPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+
Sbjct: 213 LYPSLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKS 270

Query: 958 LVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           LV  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 271 LVDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANS 307


>gi|301764899|ref|XP_002917866.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase delta catalytic
            subunit-like [Ailuropoda melanoleuca]
          Length = 1106

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 177/661 (26%), Positives = 304/661 (45%), Gaps = 103/661 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR+   RS +
Sbjct: 374  EEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKV--HTFPFLGRVSGLRSNI 431

Query: 698  --PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
                 +  +T    G     +  + GR+  D     + LLRE    SY+L  ++   L +
Sbjct: 432  RDSSFQSKQT----GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGE 484

Query: 753  DRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   
Sbjct: 485  QKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPL 543

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
            G  L  +R Q+V+ +                     +++ +Q    G+    V+    ED
Sbjct: 544  GYLL--SRGQQVKVV---------------------SQLLRQAMREGLLMPVVKTEGGED 580

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                                Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT
Sbjct: 581  --------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT 620

Query: 931  VER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTAS 973
            + R                +P G    + +S   G+LP++L+NL+  R+  K  + K   
Sbjct: 621  LLRPGAAQKLGLTEDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETD 679

Query: 974  GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
             L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++  
Sbjct: 680  PLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKY 739

Query: 1034 NLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYK 1084
             +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y 
Sbjct: 740  TVENGYGANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYF 799

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
              LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R   
Sbjct: 800  PYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPA 858

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
              V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++   
Sbjct: 859  GAVAHAQD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDP 912

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
             +  S GD VPY+I        G++ G+A   +  D L   +    ID  Y   ++  P+
Sbjct: 913  GSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYXKKKKKKPL 965

Query: 1265 V 1265
            +
Sbjct: 966  L 966


>gi|408397517|gb|EKJ76659.1| hypothetical protein FPSE_03209 [Fusarium pseudograminearum CS3096]
          Length = 1104

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 181/689 (26%), Positives = 308/689 (44%), Gaps = 105/689 (15%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-S 684
            +S   + +L  E  E+ +L+     L + D D++ G+NIS FD   LL RA+  +V    
Sbjct: 356  SSIVATQILAYEKEEK-MLSDWQKFLIRTDPDIITGYNISNFDFPYLLDRAKHLKVAGFE 414

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
             W++I  ++       R   T F S   G      +   GRL  D     +   +  SY+
Sbjct: 415  YWTRIPSMQS------RAKETNFSSKQMGNRDTKATNTNGRLQLDLLQLIQRDHQLRSYT 468

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM  LS L    
Sbjct: 469  LNSVCANFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYT 528

Query: 801  QLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            ++  ++G  +   L  +R Q+V+++  L      +K ++P                    
Sbjct: 529  EMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQKLVIP-------------------- 566

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                         N  ++ S            Y G  V+EP +G YD  I  LDF SLYP
Sbjct: 567  -------------NLKSEASDEQ---------YEGATVIEPTRGYYDVPIATLDFASLYP 604

Query: 919  SIIQEYNICFTT-----------VERSPDGLVPHLPSSKT-------TGVLPELLKNLVQ 960
            SI+Q +N+C+TT           +++  D +V   P+  T        G+L ++L+ L+ 
Sbjct: 605  SIMQAHNLCYTTLVSKKAIEAFNLQKDEDYIV--TPNGDTFVTIKQRKGLLAQILEELLS 662

Query: 961  RRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
             R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +A   T  GR
Sbjct: 663  ARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEIASSTTSFGR 722

Query: 1020 EILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
            +++  T + V+   N+        +VIYGDTDS+MI  G  D+ +A  +  +  + V++K
Sbjct: 723  KMIEKTKEEVEGRYNIANGYSHDAQVIYGDTDSVMIKFGTKDLQEAMRLGEEASKYVSEK 782

Query: 1072 Y-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL + V 
Sbjct: 783  FVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVI 840

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
            +  L  IL ++      E +  ++     D+   +V + K VITK LTK  + Y  A  Q
Sbjct: 841  EKVLRMILIDQDVPGAQEYVKETIA----DLLQNKVDMSKLVITKALTK--DDY--AAKQ 892

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             HV++A R+K+    +    GD V Y++            G     +  D +   +    
Sbjct: 893  AHVELAQRMKKRDAGSAPGLGDRVAYVMI-------RGPAGAKNFEKSEDPIYVLEHNVP 945

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPER 1279
            ID  YY   Q+   + R+   I G +  R
Sbjct: 946  IDTRYYLDNQLAKPLGRIFEPILGETKAR 974


>gi|320586772|gb|EFW99435.1| DNA polymerase delta catalytic subunit [Grosmannia clavigera kw1407]
          Length = 1105

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 179/684 (26%), Positives = 308/684 (45%), Gaps = 95/684 (13%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-S 684
            +S   + +L  E  E+ L +     L ++D D++ G+NIS FD   LL RA+  +V    
Sbjct: 357  SSIVATEILEFEREEKMLTDWRNF-LLRIDPDIITGYNISNFDFPYLLDRAKHLKVGGFE 415

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             W++I  + RS+           GS  +    + I GRL  D     +      SY+L  
Sbjct: 416  YWTRIPSM-RSQSKDTNLSSKQMGSRDTKA--TNINGRLQLDLLQLIQRDHHLRSYTLNS 472

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +    L + +++V    + ++F  T E+   L  Y   DA+L   LM  LS L    ++ 
Sbjct: 473  VCSHFLGEQKEDVHHTMITELFNGTPENRRRLALYCLKDAYLPQRLMDKLSCLENYTEMA 532

Query: 804  NISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
             ++G  +   L  +R Q+V+++  L      +K +VP+                  V+ +
Sbjct: 533  RVTGVPFNFLL--SRGQQVKFISQLFRKAMDQKLVVPN------------------VQPK 572

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
              EE                         Y G  V+EP +G Y   +  LDF SLYPSI+
Sbjct: 573  GSEE------------------------QYEGATVIEPVRGFYKVPVATLDFASLYPSIM 608

Query: 922  QEYNICFTT-----------VERSPDGLVP-----HLPSSKTTGVLPELLKNLVQRRRMV 965
            Q +N+C+TT           +++  D +V       + + +  G+L ++L+ L+  R+  
Sbjct: 609  QAHNLCYTTLVNNAAIEAFGLKKDVDYIVTPNKDKFVTTKQRKGLLAQILEELLAARKQA 668

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            +  +   +   K   L+ +Q ALK++ANS+YG  G +N +     +A   T  GR+++  
Sbjct: 669  RRELAMETDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCLEIARSTTSYGRQMIEQ 728

Query: 1025 TVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T + V+           N +VIYGDTDS+M+  G  D+ +A  +     Q V+ K+ K +
Sbjct: 729  TRNEVEQRYSVANGYSHNAQVIYGDTDSVMVKFGTKDLTEAMKLGEDAAQFVSSKFAKPI 788

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL + V D  L 
Sbjct: 789  KLEFEKVYYPYLLINKKRYAG--LYWTKPEAYDKMDTKGIETVRRDNCLLVQTVIDKVLR 846

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
             IL ++        + +++     D+   +V + K VITK LTK  E+Y     Q HV++
Sbjct: 847  MILVDQDEVGAQAYVKDTI----ADLLQNKVDMSKLVITKALTK--ESY--TAKQAHVEL 898

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+K+    +    GD V Y++          + G     R  D +   +    ID  Y
Sbjct: 899  AERMKKRDAGSAPGLGDRVAYVMV-------KGAAGSKNFERSEDPIYVLEHNVPIDTKY 951

Query: 1256 YASQQIHPVVSRLCASIEGTSPER 1279
            Y   Q+   + R+   I G +  R
Sbjct: 952  YLDNQLAKPLGRIFEPILGETKAR 975


>gi|225682079|gb|EEH20363.1| DNA polymerase delta catalytic subunit [Paracoccidioides brasiliensis
            Pb03]
          Length = 1110

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 204/826 (24%), Positives = 364/826 (44%), Gaps = 151/826 (18%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +RVS C+ E ++   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEAPASKYELLPLTERVSNCQIEASIHY-RDLIAHPNDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +              KP + + F     
Sbjct: 314  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRYGES-----------KPFVRNVFV---- 358

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL--NRLMIELYKLDSDVLVGHNISG 666
            LD     +              + +L  ++ E+ L+     ++E+   D DV++G+NI+ 
Sbjct: 359  LDTCSLIVN-------------TQILEFDTEEKMLMAWKEFLVEV---DPDVIIGYNIAN 402

Query: 667  FDLDVLLHRAQ--VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAG 721
            FD   L+ RA+   CR     WS++ ++        R G   F S   G      + I+G
Sbjct: 403  FDFPYLIKRAEHLKCR-EFPFWSRLTQVAS------RVGDARFSSKQIGNRESKSTNISG 455

Query: 722  RLLCDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEY 778
            R+  D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y
Sbjct: 456  RIQLDLLQLVQRDHQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTADSRRRLAVY 513

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYI 836
               DA+L   LM     L    ++  ++G  +   L  +R Q+V+++  L      ++ +
Sbjct: 514  CLKDAYLPQRLMDKFMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQQLV 571

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
            +P+                     RN  E T+E                     Y G  V
Sbjct: 572  IPNL--------------------RN--EATSEQ--------------------YEGATV 589

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLV 939
            +EP +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G  
Sbjct: 590  IEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIEAHGMKEGEDYIVTPNG-- 647

Query: 940  PHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
                ++K   G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG 
Sbjct: 648  DRFCTAKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKVSANSVYGL 707

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHS 1049
             G +  +    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  
Sbjct: 708  TGATVGKLPCLPIASSTTSYGRQMIEKTKEEVEAKYTIANGYSNDAQVVYGDTDSVMVKF 767

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
            G  D+A+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA   + +     Y+
Sbjct: 768  GTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYD 825

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KG++ VRRD   + + V +  L +IL ER  +     + N++     D+   ++ +
Sbjct: 826  KMDTKGIETVRRDNCRMVQTVIETVLKKILIERDVDGAQNYVKNTI----SDLLQNKIDM 881

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
             K VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S   
Sbjct: 882  SKLVITKALSKKDY----TAKQAHVELAERMKKRDAGSAPALGDRVAYVIVKGAGGSKNY 937

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                    +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 938  E-------KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 976


>gi|226289255|gb|EEH44767.1| DNA polymerase delta catalytic subunit [Paracoccidioides brasiliensis
            Pb18]
          Length = 1110

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 204/826 (24%), Positives = 364/826 (44%), Gaps = 151/826 (18%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+    SK+   P  +RVS C+ E ++   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEAPASKYELLPLTERVSNCQIEASIHY-RDLIAHPNDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF +      I  A+VV  +              KP + + F     
Sbjct: 314  ILSFDIECAGRKGVFPEANQDPVIQIANVVTRYGES-----------KPFVRNVFV---- 358

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL--NRLMIELYKLDSDVLVGHNISG 666
            LD     +              + +L  ++ E+ L+     ++E+   D DV++G+NI+ 
Sbjct: 359  LDTCSLIVN-------------TQILEFDTEEKMLMAWKEFLVEV---DPDVIIGYNIAN 402

Query: 667  FDLDVLLHRAQ--VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAG 721
            FD   L+ RA+   CR     WS++ ++        R G   F S   G      + I+G
Sbjct: 403  FDFPYLIKRAEHLKCR-EFPFWSRLTQVAS------RVGDARFSSKQIGNRESKSTNISG 455

Query: 722  RLLCDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEY 778
            R+  D   L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y
Sbjct: 456  RIQLDLLQLVQRDHQLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTADSRRRLAVY 513

Query: 779  GETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYI 836
               DA+L   LM     L    ++  ++G  +   L  +R Q+V+++  L      ++ +
Sbjct: 514  CLKDAYLPQRLMDKFMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQQLV 571

Query: 837  VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
            +P+                     RN  E T+E                     Y G  V
Sbjct: 572  IPNL--------------------RN--EATSEQ--------------------YEGATV 589

Query: 897  LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLV 939
            +EP +  YD  I  LDF SLYPSIIQ +N+C+TT+ +                 +P+G  
Sbjct: 590  IEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTTLLKKSTIEAHGMKEGEDYIVTPNG-- 647

Query: 940  PHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
                ++K   G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG 
Sbjct: 648  DRFCTAKVRKGLLTQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKVSANSVYGL 707

Query: 998  LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHS 1049
             G +  +    P+A   T  GR+++  T + V+    +        +V+YGDTDS+M+  
Sbjct: 708  TGATVGKLPCLPIASSTTSYGRQMIEKTKEEVEAKYTIANGYSNDAQVVYGDTDSVMVKF 767

Query: 1050 GIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
            G  D+A+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA   + +     Y+
Sbjct: 768  GTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYD 825

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KG++ VRRD   + + V +  L +IL ER  +     + N++     D+   ++ +
Sbjct: 826  KMDTKGIETVRRDNCRMVQTVIETVLKKILIERDVDGAQNYVKNTI----SDLLQNKIDM 881

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
             K VITK L+K          Q HV++A R+K+    +  + GD V Y+I    G S   
Sbjct: 882  SKLVITKALSKKDY----TAKQAHVELAERMKKRDAGSAPALGDRVAYVIVKGAGGSKNY 937

Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                    +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 938  E-------KSEDPIYVLENNIPIDTKYYLDNQLAKPLTRIFEPILG 976


>gi|443690888|gb|ELT92898.1| hypothetical protein CAPTEDRAFT_165849 [Capitella teleta]
          Length = 1052

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 171/677 (25%), Positives = 305/677 (45%), Gaps = 96/677 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G+ VL  ES E  LL +    + ++D DV+ G+NI  FDL  LL+RA   +V +  +  
Sbjct: 311  VGAQVLSFES-EAELLKKWAEFIREVDPDVITGYNIQNFDLPYLLNRAAHLKVKN--FDY 367

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
            +GR+K  +             G     +  + GR++ D     + LLR+    SY+L  +
Sbjct: 368  LGRIKDIKSTVKEAMVQSKQMGKRENKIINMEGRVIFDLL---QVLLRDYKLRSYTLNAV 424

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q  + ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 425  SFHFLEEQKEDVH-HSIISDLQNGSDQTRRRLAVYCLKDAYLPLRLLDKLMSIINYIEMA 483

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G   G  L   +  +V   LL   + +  ++P    Y  ET                
Sbjct: 484  RVTGVSLGILLSRGQQIKVMSQLLRKAKTQDLVIP---VYKVET---------------- 524

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                    G  + G  V+EP +G YD  +  LDF SLYPSI+  
Sbjct: 525  ------------------------GDEFTGATVIEPVRGYYDTPVATLDFASLYPSIMMA 560

Query: 924  YNICFTTVERSPDGL------------VP----HLPSSKTTGVLPELLKNLVQRRRMVKT 967
            +N+C+TT+  +P  +             P     + S+   G+LPE+L++L+  R+  KT
Sbjct: 561  HNLCYTTLITTPSSIEKEGLSSDQYIKTPANSLFVKSTVRKGLLPEILESLLSARKKAKT 620

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K+ +   + + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T 
Sbjct: 621  ELKSETDPFRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRLMIEQTK 680

Query: 1027 DLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEI 1077
              V+    ++        V+YGDTDS+M   G+  +A+A  +  +   E+ K +   +++
Sbjct: 681  QFVEETYTVKNGYKHDAMVVYGDTDSVMCRFGVSTVAEAMELGQEAALEITKTFVSPIKL 740

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + F     ++ ++ KG++ VRRD   L   + + CL +I
Sbjct: 741  EFEKVYFPYLLINKKRYAG--LYFTKADVHDKMDCKGIETVRRDNCQLVANLINTCLQKI 798

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L  R     V+    ++     D+   ++ + + VITK L K  + Y  A  Q HV++A 
Sbjct: 799  LINRDPMGAVDYAKQTI----SDLLCNRIDISQLVITKELAKTEDEY--AAKQAHVELAH 852

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +    GD VPY+I      +       A   +  D +   +    ID+ YY 
Sbjct: 853  RMRKRDAGSAPQLGDRVPYVIIAAPKKT-------AAYLKSEDPIYVLENNIPIDVQYYL 905

Query: 1258 SQQIHPVVSRLCASIEG 1274
              Q+   + R+   I G
Sbjct: 906  ENQLAKPLLRIFEPILG 922


>gi|354548476|emb|CCE45212.1| hypothetical protein CPAR2_702240 [Candida parapsilosis]
          Length = 1080

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 200/811 (24%), Positives = 351/811 (43%), Gaps = 133/811 (16%)

Query: 502  VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-- 559
            + G SW+++ K        ++S C+ E ++D  KD+    S K   ++ P+ + + ++  
Sbjct: 237  ITGMSWITLPKGKYKIKSNKISTCQIECSIDY-KDLIAHQSEKEWLKMAPLRILSFDIEC 295

Query: 560  ---KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPM 616
               K +F + +    I  A+VV    +K+          KP + + FTV           
Sbjct: 296  AGRKGIFPEAEHDPVIQIANVV----SKLGD-------SKPFVRNVFTV----------- 333

Query: 617  GFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA 676
              N  A    S  GS +   E  E  LL+     + ++D DV++G+N + FD+  LL RA
Sbjct: 334  --NTCA----SIIGSQIYEHEKEEEMLLHWKEF-VNEVDPDVIIGYNTANFDIPYLLDRA 386

Query: 677  QVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRD 733
            +  +V    +   GRLK     K      IF S   G     +  I GR+  D     + 
Sbjct: 387  RALKV--HQFPYFGRLKSV---KQEIKEAIFSSRAYGTRENKVVNIDGRMQLDLLQFIQR 441

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMF 791
              +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L + L+ 
Sbjct: 442  EYKLRSYTLNSVSAHFLGEQKEDV-QHSIITDLQNGNKETRRRLAVYCLKDAYLPLRLLD 500

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L  L    ++  ++G  +   L   +  +V   L      +  ++P+         M  
Sbjct: 501  KLMCLVNYTEMARVTGVPFSYLLSRGQQIKVVSQLFRKCLQEDIVIPN---------MKS 551

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            + S+   E                                 G  V+EP++G YD  I  L
Sbjct: 552  EGSSEEFE---------------------------------GATVIEPERGYYDVPIATL 578

Query: 912  DFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELL 955
            DF+SLYPSI+  +N+C+TT+                 ++P+G    + + K  G+LP +L
Sbjct: 579  DFSSLYPSIMMAHNLCYTTLLNRNSIKAFDLKEEDYTKTPNGDY-FVHADKKKGILPTIL 637

Query: 956  KNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
              L+  R+  KT +K      K   L+ +Q ALK++ANS+YG  G +  +     ++  +
Sbjct: 638  NELLTARKKAKTDLKNEKDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSV 697

Query: 1015 TQQGREILRSTVDLVQNN--------LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ 1066
            T  GRE++  T + VQ           +  VIYGDTDS+M+  G  D+     +  +   
Sbjct: 698  TAFGREMIEKTKNEVQERYSKKNGYPYDAHVIYGDTDSVMVKFGYQDLKTCMKLGEEAAN 757

Query: 1067 EVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
             V+ K++  ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD   L
Sbjct: 758  YVSTKFQNPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KFDKMDTKGIETVRRDNCRL 815

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
             + V    L  IL ER+ +     +  ++     D+   +V L + VITK  +K    + 
Sbjct: 816  VQNVITKVLEFILEERNVDKAQRFVKQTIA----DLLQNRVDLSQLVITKAYSK----HD 867

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
             +  Q HV++A R+++    +  + GD V Y+I          + G     +  D L   
Sbjct: 868  YSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSEDPLYVL 919

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +    ID+ YY  QQ+   + R+   I G S
Sbjct: 920  ENSLPIDVKYYLEQQMTKPLERIFIPILGES 950


>gi|324120714|dbj|BAJ78748.1| DNA polymerase delta catalytic subunit [Euconocephalus varius]
          Length = 1035

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 173/674 (25%), Positives = 308/674 (45%), Gaps = 97/674 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S E+ +L +    + ++D D+  G+NI+ FD   L++RA+   V +  ++ +GR+K  ++
Sbjct: 306  SKEQEMLEKWSEFVREVDPDIFTGYNINNFDFPYLINRAKHLSVRN--FTYLGRVK--DI 361

Query: 698  PKLRKGRTI----FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
              + K + +     G   +  I   + GR++ D  L      +  SY+L  ++   L + 
Sbjct: 362  QSVIKEQVLQSKQMGRRENKNIN--VEGRVIFDLLLVLVRDYKLRSYTLNAVSYHFLQEQ 419

Query: 754  RKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
            +++V  H+++   Q  T ++   L  Y   DA+L + L+  L  +    ++  ++G    
Sbjct: 420  KEDVH-HNIITDLQNGTPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVSLA 478

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
              L   +  +V   LL   R + Y++P     V+E +                       
Sbjct: 479  SLLTRGQQIKVVSQLLRKARERNYLMPAYSAGVQEDQ----------------------- 515

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                               Y G  V+EPKKG Y   I  LDF+SLYPSI+  +N+C+TT+
Sbjct: 516  -------------------YEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTL 556

Query: 932  ----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
                 +   GL P            +  S   G+LPE+L+NL+  R+  K  +K      
Sbjct: 557  LQGGVKENLGLTPDQYTKTPASNFFVKGSVRKGLLPEILENLLSARKKAKADLKEEKDPF 616

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+   ++
Sbjct: 617  KQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRYSV 676

Query: 1036 --------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                     VIYGDTDS+M+  G+  + +A ++  +  + V  K+ K ++++ + +Y   
Sbjct: 677  ANGYQHDASVIYGDTDSVMVKFGVKTLEEAMSLGREAAEFVTSKFVKPIKLEFEKVYFPY 736

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++L +R     
Sbjct: 737  LLINKKRYAGLYFTRPDK--YDKMDCKGLETVRRDNCPLVANMMNTCLQKLLIDRDPNGA 794

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V+       +V  D+   ++ + + V+TK LTK       A  Q HV +A ++K+    T
Sbjct: 795  VDYAK----QVISDLLCNRIDVSQLVVTKELTKSDY----AAKQAHVVLAEKMKKRDPGT 846

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD VPY+      T++  +     +A  P  + + +    ID +YY   Q+   + 
Sbjct: 847  APKLGDRVPYVF-----TTAAKNTPAYMKAEDPIYVLENNIP--IDSNYYMENQLSKPLL 899

Query: 1267 RLCASIEGTSPERL 1280
            R+   I G   E L
Sbjct: 900  RIFEPILGDKAESL 913


>gi|255956273|ref|XP_002568889.1| Pc21g18980 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590600|emb|CAP96795.1| Pc21g18980 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1112

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 200/816 (24%), Positives = 360/816 (44%), Gaps = 130/816 (15%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G +W+     K+      QR+S C+ E +VD  +D+     +   A++ P+ 
Sbjct: 248  FMIDTGLAGMAWVEAIAGKYRLLGQSQRLSNCQIEASVDY-RDMIAHPPNGEWAKMAPLR 306

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGM---LSHFTVVRKLD 610
            V + +++                  C  +  I        + +P M   +    VV +  
Sbjct: 307  VLSFDIE------------------CAGRKGI--------FPEPNMDPVIQIANVVTRY- 339

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G   P   N    D  S   +  +     E  +L+     + K+D DV++G+NI+ FD  
Sbjct: 340  GETKPFIRNVFVLDTCSLIVNTQILEFEKEEKMLDAWRDFVEKVDPDVIIGYNIANFDFP 399

Query: 671  VLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF- 728
             LL RA+  +      W+++   K          + +   G      +   GR+  D   
Sbjct: 400  YLLDRAKHLKCTGFPYWTRLKGFKTEAKDANFSSKQM---GNRDTKATNTNGRIQLDLLQ 456

Query: 729  LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLS 786
            L  RD  LR  SY+L  ++   L + +++V    + ++F  T +S   L  Y   DA+L 
Sbjct: 457  LVQRDHQLR--SYTLNSVSYEFLKEQKEDVHHTMITELFNGTPDSRRRLAVYCLKDAYLP 514

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              LM  L  L    ++  ++G  +   L  +R Q+V+++  L    R ++ ++P+     
Sbjct: 515  QRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKAREQQLVIPNS---- 568

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                                                   K +    Y G  V+EPK+G Y
Sbjct: 569  ---------------------------------------KPQDEQDYEGATVIEPKRGYY 589

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PHLPSSKTT---- 948
               +  LDF SLYPSIIQ +N+C+TT           +++  D +V P+     TT    
Sbjct: 590  GVPVATLDFASLYPSIIQAHNLCYTTLLNKSSVEKLNLKKDEDYIVTPNGDMFCTTKVRK 649

Query: 949  GVLPELLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+L ++L+ L+  R+  K  + T +   K   L+ +Q ALK++ANS+YG  G +  +   
Sbjct: 650  GLLSQILEELLSARKRAKKELATETDSFKKAVLNGRQLALKVSANSVYGLTGATVGKLPC 709

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKA 1059
             P+A   T  GR+++  T   V+    +        EVIYGDTDS+M+  G+ ++A A  
Sbjct: 710  LPIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAEVIYGDTDSVMVKFGVTELADAMK 769

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ V
Sbjct: 770  LGEEAADFVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTNPNKHDKMDTKGIETV 827

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  L+ + V +  L++IL +R  +   + +  ++     D+   ++ + K VITK L+
Sbjct: 828  RRDNCLMVQNVIETVLNKILIDRDIDGAQDYVKATI----SDLLQNKIDMSKLVITKALS 883

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K  E Y  A  Q HV++A R+ +    +  + GD V Y++      S G      +RA  
Sbjct: 884  KRKEDY--AGKQAHVELAERMHKRDAGSAPTLGDRVAYVMIKGSTDSKG-----YERAED 936

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            P  +   +    ID  YY   Q+   ++R+   I G
Sbjct: 937  P--IFVLENNIPIDTKYYLDNQLTNPLNRIFEPILG 970


>gi|68525479|gb|AAY98790.1| family B-type DNA polymerase [Staphylothermus marinus]
          Length = 801

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 299/632 (47%), Gaps = 113/632 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
             D D++VG+N  GFD   L+ R++   V   +  ++G   R+         + +G  + P
Sbjct: 237  FDPDIIVGYNTDGFDWPYLIERSKYIGVKLDVTRRVGATPRT---------STYGHISVP 287

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKEVGPHDVLKMFQTLE 770
            G       RL  D +  + ++      SL  +A+        +R  +   D+ K +   +
Sbjct: 288  G-------RLNTDLYHFAEEIPEVKVKSLENVAEYLGVMKKSERVIIEYIDIPKYWDDEK 340

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE-YLLLHA 829
               +L++Y   D   +  L      LP   QL+NI+G    +    +   R+E YL+  A
Sbjct: 341  LRPKLLQYNIDDVKSTYGLAEKF--LPFAMQLSNITGLPLDQVGAASVGFRLEWYLMREA 398

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
            FR  + +VP++     E+                                          
Sbjct: 399  FRYGE-LVPNRVERAAES------------------------------------------ 415

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS----PD--GLVP--- 940
             Y G +VL+P KG+++  I +LDF+S+YP+I+ +YN+   T+ R+    PD   + P   
Sbjct: 416  -YRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIVRNEKCNPDKHNIAPEVG 473

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCL 998
            H    +  G    +L+ L++ R+ +K+ MK    +  + + LD +Q+A+K+ AN+ YG +
Sbjct: 474  HCFRKEPPGFFKRVLETLLRLRKQIKSEMKKYPPTSYEYRLLDERQKAVKVLANATYGYM 533

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            G+ ++R+Y +  AE +T  GR+ ++S ++L +  L L+VIYGDTDS+ +    D +    
Sbjct: 534  GWIHARWYCRECAEAVTAWGRQTIKSAIELAR-KLGLKVIYGDTDSLFVTYDKDKVE--- 589

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDM 1117
                K+I+ +  K    EI +D +YKR+   + KK+YA +    +DG     I+  G + 
Sbjct: 590  ----KLIELIQTKL-GFEIKIDKIYKRVFFTEAKKRYAGL---LEDGR----IDIVGFEA 637

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VR DW+ ++KEV +     +L E S +  +E +     +V  D+++G++ L+K +I KTL
Sbjct: 638  VRGDWAEIAKEVQEKVTEILLKENSIDKAIEYVR----QVIADLKAGKIPLDKLIIWKTL 693

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            +K  E Y  + + PHV  A +L ++G     S  D + Y+I    G        I+ RA 
Sbjct: 694  SKRIEEY--SVDAPHVVAAKKLIKAG--IKVSTNDKIGYVILKGGGK-------ISSRAE 742

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                +K  D K +ID +YY   QI P   R+ 
Sbjct: 743  PYIFVK--DPK-LIDTEYYVDHQIVPAALRIL 771


>gi|2581886|gb|AAC47770.1| DNA polymerase alpha [Leishmania donovani]
          Length = 308

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 172/338 (50%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD++               
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV-------------- 168

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                          NF      ++   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 169 --------------QNFKRGRDDDEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRENGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MK    A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKIEKDANNLAL--LEIRQKALKLTANS 308


>gi|327507712|sp|P0CL76.1|DPOL_PYRAY RecName: Full=DNA polymerase 1; AltName: Full=Pab polymerase
 gi|1495770|emb|CAA90887.1| DNA-dependent DNA polymerase; endonuclease [Pyrococcus sp.]
          Length = 771

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 181/650 (27%), Positives = 296/650 (45%), Gaps = 101/650 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ RL+  + + D DV++ +N   FD   LL RA+   +   +    GR   SE 
Sbjct: 185  SSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLPL----GR-DNSE- 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKMQR------MGDSLAVE--IKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              H++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G       + +
Sbjct: 291  YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWDVSRSS 348

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 349  TGNLVEWFLLRKAYERNELAPNK------------------------------------- 371

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
                  + +   +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R    
Sbjct: 372  PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 430

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                +P   V H       G +P LL NL++ R+ +K  MK +   ++ + LD +Q+A+K
Sbjct: 431  EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 488

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
            + ANS YG  G++ +R+Y K  AE +T  GR+     +DLV+  L     +V+Y DTD +
Sbjct: 489  ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESSGFKVLYIDTDGL 544

Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
               I     +  K KA+  K ++ +N K    LE++ +G Y R   + KKKYA +  + K
Sbjct: 545  YATIPGAKPNEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 602

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                   I  +GL++VRRDWS ++KE     L  IL   + ++ V+ +     +V E + 
Sbjct: 603  -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 651

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI+    
Sbjct: 652  KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 707

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            G  S  ++ I       +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 708  GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|47219672|emb|CAG02717.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1008

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 180/683 (26%), Positives = 317/683 (46%), Gaps = 100/683 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GS +LC  + E  LL      L  +D D++ G+NI  FD   LL+RA   +V   ++
Sbjct: 269  SIVGSQILCF-TQENKLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKV--QLF 325

Query: 687  SKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYS 741
              +GR++  +S +  L       G   +  I   + GR+  D     + LLR+    SY+
Sbjct: 326  PYLGRVRSSKSVLRDLNFQSKQMGRRENKTIN--MEGRVQFDLL---QVLLRDYKLRSYT 380

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L  +   
Sbjct: 381  LNAVSFHFLQEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINY 439

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G      L   +  +V   LL     +  ++P     V +T+        G E
Sbjct: 440  MEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKTE--------GGE 486

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
            D                              Y G  V+EP+KG Y   I  LDF+SLYPS
Sbjct: 487  D------------------------------YTGATVIEPEKGYYSIPIATLDFSSLYPS 516

Query: 920  IIQEYNICFTTVE----------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            I+  +N+C+TT+                 ++P G +  + SS   G+LPE+L+NL+  R+
Sbjct: 517  IMMAHNLCYTTLLQKGAQDKYSLSREDFIKTPTGDL-FVKSSVRKGLLPEILENLLSARK 575

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  +K  +   K Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++
Sbjct: 576  RAKAELKKETDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMI 635

Query: 1023 RSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
              T  LV++   +        +VIYGDTDS+M+  G+  + +A +I  +  + V+  +  
Sbjct: 636  EQTKQLVESKYTISNGYQADAKVIYGDTDSVMVKLGVATVKEAMSIGKEAAEWVSSHFIM 695

Query: 1075 -LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             ++++ + +Y   LL+ KK+YA +     +   ++ ++ KG++ VRRD   L   + + C
Sbjct: 696  PIKLEFEKVYYPYLLINKKRYAGLYFS-SNAETHDKMDCKGIETVRRDNCPLVANLINTC 754

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L +IL +R  +  V+       +V  D+   ++ + + VITK LT+  + Y  A  Q HV
Sbjct: 755  LQKILIDRDPQGAVDHAK----EVISDLLCNRIDISQLVITKELTRTAQEY--AGKQAHV 808

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A R+++    +  + GD VPY+          ++ G A   +  D +   +    ID 
Sbjct: 809  ELAERMRKRDAGSAPNLGDRVPYV-------IIKAAKGAAAYMKSEDPIYVLENSIPIDT 861

Query: 1254 DYYASQQIHPVVSRLCASIEGTS 1276
             YY  QQ+   + R+   I G S
Sbjct: 862  QYYLEQQLSKPLLRIFEPILGES 884


>gi|302421082|ref|XP_003008371.1| DNA polymerase delta catalytic subunit [Verticillium albo-atrum
            VaMs.102]
 gi|261351517|gb|EEY13945.1| DNA polymerase delta catalytic subunit [Verticillium albo-atrum
            VaMs.102]
          Length = 1055

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 180/691 (26%), Positives = 306/691 (44%), Gaps = 113/691 (16%)

Query: 632  NVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            NV C +++             E  +L      L  +D D+++G+NI+ FD   LL RA+ 
Sbjct: 299  NVFCLDTTSSIVATQVLEFDKEEKMLKEWQKFLQSVDPDLIIGYNIANFDFPYLLDRAKH 358

Query: 679  CRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDL 734
             +V     WS+I       MP  R   T F S   G      +   GRL  D     +  
Sbjct: 359  LKVAGFEYWSRI-----PSMPS-RAKETSFSSKQIGNRDSKSTNTNGRLQLDLLQLVQRD 412

Query: 735  LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHL 793
                SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM  L
Sbjct: 413  HHLRSYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKL 472

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAK 851
            S L    ++  ++G  +   L  AR Q+V ++  L      +K ++P+         M  
Sbjct: 473  SCLENYTEMARVTGAPFNMLL--ARGQQVRFISQLFRKALEQKLVIPN---------MKS 521

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            + S+                                   Y G  V+EP +G YD  I  L
Sbjct: 522  EASDE---------------------------------QYEGATVIEPTRGYYDVPIATL 548

Query: 912  DFNSLYPSIIQEYNICFTTV-----------ERSPDGLV-----PHLPSSKTTGVLPELL 955
            DF SLYPSI+Q +N+C+TT+           ++  D +V       + + +  G+L ++L
Sbjct: 549  DFASLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIVTPAGNTFVTAKQRKGLLAQIL 608

Query: 956  KNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            + L+  R+  K  +  A+   K   L+ +Q ALK++ANS+YG  G +  +     +A   
Sbjct: 609  EELLAARKQAKRELAVATDPFKKAVLNGRQLALKVSANSVYGLTGATTGKLPCLEIASST 668

Query: 1015 TQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ 1066
            T  GR+++  T + V+    +        +VIYGDTDS+M+  G  D+A+A  +  +   
Sbjct: 669  TSFGRQMIEKTKEEVEAKYTIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMKLGEEAAG 728

Query: 1067 EVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
             V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL
Sbjct: 729  FVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCLL 786

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
             + V +  L  IL ++  +   E + + +     D+   +V + K VITK LTK  + Y 
Sbjct: 787  VQTVIEKVLRMILIDQDVQGAQEYVKDMIA----DLLQNKVDMSKLVITKALTK--DDY- 839

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
             +  Q HV++A R+K+    +    GD V Y++          + G     +  D +   
Sbjct: 840  -SAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMI-------KGAAGAKNYEKSEDPIFVL 891

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +    ID  YY   Q+   + R+   I G +
Sbjct: 892  ENNVPIDTRYYLDNQLAKPLGRIFEPILGET 922


>gi|14521919|ref|NP_127396.1| DNA polymerase I [Pyrococcus abyssi GE5]
 gi|327507711|sp|P0CL77.1|DPOL_PYRAB RecName: Full=DNA polymerase 1; AltName: Full=Pab polymerase
 gi|5459139|emb|CAB50625.1| polI DNA polymerase I [Pyrococcus abyssi GE5]
 gi|380742558|tpe|CCE71192.1| TPA: DNA polymerase I [Pyrococcus abyssi GE5]
          Length = 771

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 181/650 (27%), Positives = 296/650 (45%), Gaps = 101/650 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ RL+  + + D DV++ +N   FD   LL RA+   +   +    GR   SE 
Sbjct: 185  SSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLPL----GR-DNSE- 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKMQR------MGDSLAVE--IKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              H++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G       + +
Sbjct: 291  YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWDVSRSS 348

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 349  TGNLVEWFLLRKAYERNELAPNK------------------------------------- 371

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
                  + +   +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R    
Sbjct: 372  PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 430

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                +P   V H       G +P LL NL++ R+ +K  MK +   ++ + LD +Q+A+K
Sbjct: 431  EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 488

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
            + ANS YG  G++ +R+Y K  AE +T  GR+     +DLV+  L     +V+Y DTD +
Sbjct: 489  ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESRGFKVLYIDTDGL 544

Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
               I     +  K KA+  K ++ +N K    LE++ +G Y R   + KKKYA +  + K
Sbjct: 545  YATIPGAKHEEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 602

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                   I  +GL++VRRDWS ++KE     L  IL   + ++ V+ +     +V E + 
Sbjct: 603  -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 651

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI+    
Sbjct: 652  KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 707

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            G  S  ++ I       +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 708  GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|346974556|gb|EGY18008.1| DNA polymerase delta catalytic subunit [Verticillium dahliae VdLs.17]
          Length = 1104

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 179/691 (25%), Positives = 305/691 (44%), Gaps = 113/691 (16%)

Query: 632  NVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            NV C +++             E  +L      L  +D D+++G+NI+ FD   LL RA+ 
Sbjct: 348  NVFCLDTTSSIVATQVLEFDKEEKMLKEWQKFLQSVDPDLIIGYNIANFDFPYLLDRAKH 407

Query: 679  CRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDL 734
             +V     WS+I       MP  R   T F S   G      +   GRL  D     +  
Sbjct: 408  LKVAGFEYWSRI-----PSMPS-RAKETSFSSKQIGNRDSKSTNTNGRLQLDLLQLVQRD 461

Query: 735  LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHL 793
                SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM  L
Sbjct: 462  HHLRSYTLNSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKL 521

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAK 851
            S L    ++  ++G  +   L  AR Q+V ++  L      +K ++P+         M  
Sbjct: 522  SCLENYTEMARVTGAPFNMLL--ARGQQVRFISQLFRKALEQKLVIPN---------MKS 570

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            + S+                                   Y G  V+EP +G YD  I  L
Sbjct: 571  EASDE---------------------------------QYEGATVIEPTRGYYDVPIATL 597

Query: 912  DFNSLYPSIIQEYNICFTTV-----------ERSPDGLV-----PHLPSSKTTGVLPELL 955
            DF SLYPSI+Q +N+C+TT+           ++  D +V       + + +  G+L ++L
Sbjct: 598  DFASLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIVTPAGNTFVTAKQRKGLLAQIL 657

Query: 956  KNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            + L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +A   
Sbjct: 658  EELLAARKQAKRELAVETDPFKKAVLNGRQLALKVSANSVYGLTGATTGKLPCLEIASST 717

Query: 1015 TQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ 1066
            T  GR+++  T + V+    +        +VIYGDTDS+M+  G  D+A+A  +  +   
Sbjct: 718  TSFGRQMIEKTKEEVEAKYTIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMKLGEEAAG 777

Query: 1067 EVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
             V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL
Sbjct: 778  FVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCLL 835

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
             + V +  L  IL ++  +   E + + +     D+   +V + K VITK LTK  + Y 
Sbjct: 836  VQTVIEKVLRMILIDQDVQGAQEYVKDMIA----DLLQNKVDMSKLVITKALTK--DDY- 888

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
             +  Q HV++A R+K+    +    GD V Y++          + G     +  D +   
Sbjct: 889  -SAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMI-------KGAAGAKNYEKSEDPIFVL 940

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +    ID  YY   Q+   + R+   I G +
Sbjct: 941  ENNVPIDTRYYLDNQLAKPLGRIFEPILGET 971


>gi|1495740|emb|CAA90888.1| DNA-dependent DNA polymerase [Pyrococcus abyssi]
          Length = 771

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 178/650 (27%), Positives = 296/650 (45%), Gaps = 101/650 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ RL+  + + D DV++ +N   FD   LL RA+   +      K+   + +  
Sbjct: 185  SSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGI------KLPLGRDNSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKMQR------MGDSLAVE--IKGRIHFDLFPAIRRTINLPTYTLETVYEVIFGKSKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              H++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G+      + +
Sbjct: 291  YAHEIAEAWETGKGLERVAKYSMEDAKVTSEL--GKEFFPMEAQLARLVGHPVWDVSRSS 348

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 349  TGNLVEWFLLTKAYERNELAPNK------------------------------------- 371

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
                  + +   +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R    
Sbjct: 372  PDEREYERRLRESYEGGYVNEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 430

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                +P   V H       G +P LL NL++ R+ +K  MK +   ++ + LD +Q+A+K
Sbjct: 431  EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 488

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
            + ANS YG  G++ +R+Y K  AE +T  GR+     +DLV+  L     +V+Y DTD +
Sbjct: 489  ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESRGFKVLYIDTDGL 544

Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
               I     +  K KA+  K ++ +N K    LE++ +G Y R   + KKKYA +  + K
Sbjct: 545  YATIPGAKHEEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 602

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                   I  +GL++VRRDWS ++KE     L  IL   + ++ V+ +     +V E + 
Sbjct: 603  -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 651

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI+    
Sbjct: 652  KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLXGD 707

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            G  S  ++ I       +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 708  GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 748


>gi|388580039|gb|EIM20357.1| putative delta DNA polymerase [Wallemia sebi CBS 633.66]
          Length = 1060

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 190/690 (27%), Positives = 319/690 (46%), Gaps = 111/690 (16%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AGS VL  E  E  +LN     + + D DV++G+N S FD+  L+ RA+  +  ++ +  
Sbjct: 321  AGSQVLSFED-ESKMLNAWRDFVEEADPDVVIGYNTSNFDIPYLMDRAKALK--ATKFCY 377

Query: 689  IGRLK--RSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
            +GR+K  +SE+     G + F S   G      + + GRL  D     +   +  SYSL 
Sbjct: 378  LGRMKNVKSEV-----GTSHFSSKAYGTRDSKTTNMEGRLQLDLLQLIQREHKLRSYSLN 432

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             +    L + +++V  H ++   Q  T ES   L  Y   DA+L   L+  L  L    +
Sbjct: 433  SVCAEFLGEQKEDVH-HSIITELQNGTPESRRRLAVYCLKDAYLPQRLLDRLMSLVNQTE 491

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G  +   L  A+ Q ++ +                     +++ +Q   HG    
Sbjct: 492  MARVTGVPFNYLL--AKGQSIKVM---------------------SQICRQAQVHGYL-- 526

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
             V  L  E ++                  Y G  V+EP++G YD  I  LDF+SLYPSI+
Sbjct: 527  -VPALRVEGSD----------------EQYEGATVIEPRRGYYDVPITTLDFSSLYPSIM 569

Query: 922  QEYNICFT------TVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
              +N+C+T      TVER           +P+  +   P  K  G+LP +L++L+  R+ 
Sbjct: 570  MAHNLCYTTLLDPQTVERLKLKEGEDYIKTPNNDMFVTP-VKRKGLLPVVLQDLISARKR 628

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             +  +K+     +   LD +Q ALK++ANS+YG  G +  +    P++   T  GR ++ 
Sbjct: 629  ARADIKSEKDPFRRAVLDGRQLALKVSANSVYGFTGATIGKLPCLPISSSTTAYGRRMIE 688

Query: 1024 STVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T + V+++  +        EV+YGDTDS+MI  G  D+  A  +  +    ++ K+   
Sbjct: 689  RTKEEVESHYKVSNNYSHDAEVVYGDTDSVMIKFGCRDLETAMKLGAEAAGVISSKFPNP 748

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM-PYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
            ++++ + +Y   LL+ KK+YA +   +  G+  Y+ ++ KG++ VRRD   L   V   C
Sbjct: 749  IKLEFEKVYYPYLLINKKRYAGL---YWTGLEKYDKMDTKGIETVRRDNCRLVGTVITTC 805

Query: 1134 LSQILSER---SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
            L ++L +R   + ED  + + + L++ + DM        + VITK LTK      DAK Q
Sbjct: 806  LHKMLIDRDVKAAEDYTKHVISELLQNKIDM-------SQLVITKALTKTEY---DAK-Q 854

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             HV +A R+++    +  + GD V Y+I          S G A   R  D L   +    
Sbjct: 855  AHVCLAERMRKRDAGSAPALGDRVAYVIV-------KGSKGAAAYERSEDPLFVLENNVP 907

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            ID  YY   Q+   + R+   I G   + L
Sbjct: 908  IDTKYYLENQLSKPLLRIFEPILGEKSQSL 937


>gi|126465787|ref|YP_001040896.1| DNA polymerase II [Staphylothermus marinus F1]
 gi|126014610|gb|ABN69988.1| replicative DNA polymerase I [Staphylothermus marinus F1]
          Length = 801

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 299/632 (47%), Gaps = 113/632 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
             D D++VG+N  GFD   L+ R++   V   +  ++G   R+         + +G  + P
Sbjct: 237  FDPDIIVGYNTDGFDWPYLIERSKYIGVKLDVTRRVGATPRT---------STYGHISVP 287

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKEVGPHDVLKMFQTLE 770
            G       RL  D +  + ++      SL  +A+        +R  +   D+ K +   +
Sbjct: 288  G-------RLNTDLYHFAEEIPEVKVKSLENVAEYLGVMKKSERVIIEYIDIPKYWDDEK 340

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE-YLLLHA 829
               +L++Y   D   +  L      LP   QL+NI+G    +    +   R+E YL+  A
Sbjct: 341  LRPKLLQYNIDDVKSTYGLAEKF--LPFAMQLSNITGLPLDQVGAASVGFRLEWYLMREA 398

Query: 830  FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
            FR  + +VP++     E+                                          
Sbjct: 399  FRYGE-LVPNRVERAAES------------------------------------------ 415

Query: 890  AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS----PD--GLVP--- 940
             Y G +VL+P KG+++  I +LDF+S+YP+I+ +YN+   T+ R+    PD   + P   
Sbjct: 416  -YRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIVRNEKCNPDKHNIAPEVG 473

Query: 941  HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCL 998
            H    +  G    +L+ L++ R+ +K+ MK    +  + + LD +Q+A+K+ AN+ YG +
Sbjct: 474  HCFRKEPPGFFKRVLETLLRLRKQIKSEMKKYPPTSYEYRLLDERQKAVKVLANATYGYM 533

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            G+ ++R+Y +  AE +T  GR+ ++S ++L +  L L+VIYGDTDS+ +    D +    
Sbjct: 534  GWIHARWYCRECAEAVTAWGRQTIKSAIELAR-KLGLKVIYGDTDSLFVTYDKDKVE--- 589

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDM 1117
                K+I+ +  K    EI +D +YKR+   + KK+YA +    +DG     I+  G + 
Sbjct: 590  ----KLIELIQTKL-GFEIKIDKIYKRVFFTEAKKRYAGL---LEDGR----IDIVGFEA 637

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VR DW+ ++KEV +     +L E S +  +E +     +V  D+++G++ L+K +I KTL
Sbjct: 638  VRGDWAEIAKEVQEKVTEILLKENSIDKAIEYVR----QVIADLKAGKIPLDKLIIWKTL 693

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            +K  E Y  + + PHV  A +L ++G     S  D + Y+I    G        I+ RA 
Sbjct: 694  SKRIEEY--SVDAPHVVAAKKLIKAG--IKVSTNDKIGYVILKGGGK-------ISSRAE 742

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                +K  D K +ID +YY   QI P   R+ 
Sbjct: 743  PYIFVK--DPK-LIDTEYYVDHQIVPAALRIL 771


>gi|46125595|ref|XP_387351.1| hypothetical protein FG07175.1 [Gibberella zeae PH-1]
          Length = 1104

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 181/689 (26%), Positives = 307/689 (44%), Gaps = 105/689 (15%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-S 684
            +S   + +L  E  E+ +L+     L + D D++ G+NIS FD   LL RA+  +V    
Sbjct: 356  SSIVATQILAYEKEEK-MLSDWQKFLIRTDPDIITGYNISNFDFPYLLDRAKHLKVAGFE 414

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
             W++I  ++       R   T F S   G      +   GRL  D     +   +  SY+
Sbjct: 415  YWTRIPSMQS------RAKETNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHQLRSYT 468

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
            L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM  LS L    
Sbjct: 469  LNSVCANFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYT 528

Query: 801  QLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
            ++  ++G  +   L  +R Q+V+++  L      +K ++P                    
Sbjct: 529  EMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQKLVIP-------------------- 566

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                         N  ++ S            Y G  V+EP +G YD  I  LDF SLYP
Sbjct: 567  -------------NLKSEASDEQ---------YEGATVIEPTRGYYDVPIATLDFASLYP 604

Query: 919  SIIQEYNICFTT-----------VERSPDGLVPHLPSSKT-------TGVLPELLKNLVQ 960
            SI+Q +N+C+TT           +++  D +V   P+  T        G+L ++L+ L+ 
Sbjct: 605  SIMQAHNLCYTTLVSKKAIEAFNLQKDEDYIV--TPNGDTFVTIKQRKGLLAQILEELLS 662

Query: 961  RRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR 1019
             R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +A   T  GR
Sbjct: 663  ARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEIASSTTSFGR 722

Query: 1020 EILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK 1071
            +++  T + V+   N+        +VIYGDTDS+MI  G  D+ +A  +  +  + V+ K
Sbjct: 723  KMIEKTKEEVEGRYNIANGYSHDAQVIYGDTDSVMIKFGTKDLQEAMKLGEEASKYVSSK 782

Query: 1072 Y-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
            + K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL + V 
Sbjct: 783  FVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVI 840

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
            +  L  IL ++      E +  ++     D+   +V + K VITK LTK  + Y  A  Q
Sbjct: 841  EKVLRMILIDQDVPGAQEYVKETIA----DLLQNKVDMSKLVITKALTK--DDY--AAKQ 892

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
             HV++A R+K+    +    GD V Y++            G     +  D +   +    
Sbjct: 893  AHVELAQRMKKRDAGSAPGLGDRVAYVMI-------RGPAGAKNFEKSEDPIYVLEHNVP 945

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPER 1279
            ID  YY   Q+   + R+   I G +  R
Sbjct: 946  IDTRYYLDNQLAKPLGRIFEPILGETKAR 974


>gi|119872473|ref|YP_930480.1| DNA polymerase II [Pyrobaculum islandicum DSM 4184]
 gi|6752664|gb|AAF27815.1|AF195019_1 family B DNA polymerase [Pyrobaculum islandicum DSM 4184]
 gi|119673881|gb|ABL88137.1| replicative DNA polymerase I [Pyrobaculum islandicum DSM 4184]
          Length = 785

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 312/658 (47%), Gaps = 128/658 (19%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R ++   +  +   D DV+VG+N +GFD   L+ RA+   VP     K+ RL  S  P+
Sbjct: 210  DRGVVRAFVDFIRSYDPDVIVGYNSNGFDWPYLVERAKAVGVPL----KVDRL--SNPPQ 263

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKE 756
                ++++G  +       I GR   D +    +       +L ++A+       ++R  
Sbjct: 264  ----QSVYGHWS-------IVGRANVDLYNIVEEFPEIKLKTLDRVAEYFGVMKREERVL 312

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +  H + + ++       L  Y   D   ++ L   L  LP   QL+++SG    +    
Sbjct: 313  IPGHKIYEYWKDPNKRPLLKRYVLDDVRSTLGLADKL--LPFLIQLSSVSGLPLDQVAAA 370

Query: 817  ARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            +   RVE++LL +A+R  + + P++                  E+R  E           
Sbjct: 371  SVGNRVEWMLLRYAYRLGE-VAPNR------------------EEREYE----------- 400

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---- 931
                           Y G +VLEPK G+Y+  +L+LDF+S+YP+I+ +YN+   T     
Sbjct: 401  --------------PYKGAIVLEPKPGMYED-VLVLDFSSMYPNIMMKYNLSPDTYLEPG 445

Query: 932  -ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQ 983
                P+G+     V H       G +P++LK+LV+ R+ V+   K       + + LD +
Sbjct: 446  EPDPPEGVNVAPEVGHRFRRSPPGFVPQVLKSLVELRKAVREEAKKYPPDSPEFKILDER 505

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALK+ AN++YG LG+  +R+Y + +AE +T   R IL+  ++  +  L + V+YGDTD
Sbjct: 506  QRALKVMANAIYGYLGWVGARWYKREVAESVTAFARAILKDVIEQAR-RLGIVVVYGDTD 564

Query: 1044 SIMI--HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQ 1100
            S+ +  H  +D          K+I+ V +KY  ++I +D  Y ++L  + KK+YA +   
Sbjct: 565  SLFVKKHGDVD----------KLIKYVEEKY-GIDIKVDKDYAKVLFTEAKKRYAGL--- 610

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ-- 1158
             +DG     I+  G ++VR DWS L+K+V    +  IL  R   D+VE+ H  +  ++  
Sbjct: 611  LRDGR----IDIVGFEVVRGDWSELAKDVQLRVIEIILKSR---DIVEARHGVIKYIREI 663

Query: 1159 -EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             E +++ +  ++  +I KTL K  + Y      PHV  A  LK+ GY  G   G T+ Y+
Sbjct: 664  IERLKNYKFNIDDLIIWKTLDKELDEY--KAYPPHVHAAQILKRHGYRVG--KGTTIGYV 719

Query: 1218 ICCEQGTSSGSSVGIAQRARHP---DELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            I        G  V  ++RA      D++KK      IDIDYY  +QI P   R+   I
Sbjct: 720  IV-----KGGEKV--SERALPYILLDDIKK------IDIDYYIERQIIPAALRIAEVI 764


>gi|422294898|gb|EKU22198.1| DNA polymerase delta subunit 1 [Nannochloropsis gaditana CCMP526]
          Length = 569

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 227/446 (50%), Gaps = 46/446 (10%)

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-VERSPDGLVPHLPSSKTT- 948
            Y G  V+EPKK  Y   I  LDF SLYPSI+Q +N+C++T + R     +P  PSS  T 
Sbjct: 49   YEGATVIEPKKAFYQDPIATLDFASLYPSIMQAFNLCYSTLLSREEKQALP--PSSYITT 106

Query: 949  -------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM 994
                         G+LP +L  L+  R+  K  M  A+  ++    + +Q ALK++ANS+
Sbjct: 107  PSQESFVKPSVRKGILPLILDELLAARKRAKRDMAAATDPMEKAVQNGRQLALKISANSV 166

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIM 1046
            YG  G +  +    P+A  +T  GR++L  T   V+ +         N EV+YGDTDS+M
Sbjct: 167  YGFTGATVGQLPCIPIASSVTSYGRDLLYQTKAFVEEHYTIEKGCSANAEVVYGDTDSVM 226

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            +  G+  + +A  +A +  +EV K +   ++++ + +Y   LL+ KK+YA +     D  
Sbjct: 227  VRFGVPTVEEAMPLAERAAEEVTKIFPPPIKLEFEKVYFPYLLMNKKRYAGLLWTRPDK- 285

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
             Y+ ++ KGL+ VRRD  LL + V D CL +IL +R   DV  +I      V  ++   +
Sbjct: 286  -YDKLDTKGLETVRRDNCLLVRRVIDTCLRKILIDR---DVPGAI-GYCKHVIAELLQNK 340

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            + +   VITK L K  +    A  Q HV++A+R+K+    T  + GD V Y+I       
Sbjct: 341  MDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVI-----IQ 395

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
            +G      +R+  P  +   + +  ID DYY   Q+   ++RL   I   +PE L   L 
Sbjct: 396  AGKGAPAYERSEDPVYVL--ENRIPIDTDYYLQNQLSNPLTRLFEPIID-NPESL---LS 449

Query: 1286 LDPSKFQSKPSETMSSDPSSSLLFAV 1311
             D ++  ++P+ T  +     ++FAV
Sbjct: 450  GDHTRSIARPTPTAKA--GGIMMFAV 473


>gi|324120702|dbj|BAJ78742.1| DNA polymerase delta catalytic subunit [Isonychia japonica]
          Length = 1008

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 182/683 (26%), Positives = 317/683 (46%), Gaps = 105/683 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G++VL    +E +LL +    + ++D D++ G+NI+ FDL  LL RA+   + +  +  
Sbjct: 265  VGTHVLS-HKTEVSLLEQWANFIREVDPDIITGYNINNFDLFYLLSRAK--HLGAKNFDF 321

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSL 742
            +GR+K     K     T+  S   G        + GR++ D  L    LLR+    SY+L
Sbjct: 322  LGRIKNI---KSIAKDTVLQSKQMGRRENKKINMEGRVIFDLLLV---LLRDYKLRSYTL 375

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
              ++   L + +++V  H ++   Q    ++   L  Y   DA+L ++L+  L  +    
Sbjct: 376  NAVSFHFLGEQKEDVH-HSIITDLQNGDDQTRRRLAVYCVKDAFLPLKLLDKLMCIINYM 434

Query: 801  QLTNISG-NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            ++  ++G +L     +G + + V  LL  A +   Y++P                 + V 
Sbjct: 435  EMARVTGVSLLCLLTRGQQIKVVSQLLRKA-KEHDYVIP----------------VYSVR 477

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
              N E+                         + G  V+EPKKG Y + I+ LDF+SLYPS
Sbjct: 478  GGNDEQ-------------------------FEGATVIEPKKGYYKQPIVTLDFSSLYPS 512

Query: 920  IIQEYNICFTTV----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRM 964
            I+  +N+C+TT+     +   GL              L +S+  G+LPE+L++L+  R+ 
Sbjct: 513  IMMAHNLCYTTLLQPGTKEKLGLTSDQYTVTPNENCFLKASQRKGLLPEILESLLSARKK 572

Query: 965  VKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
             K  +K  +  L+ + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++ 
Sbjct: 573  AKEDLKKETDPLRRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIE 632

Query: 1024 STVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KC 1074
             T   V+    L         VIYGDTDS+MI  G++D+  A  +  +  + V+ K+ K 
Sbjct: 633  QTRSEVEQKFCLANGYAHDSTVIYGDTDSVMIKFGVEDLPTAMELGREAAEYVSSKFIKP 692

Query: 1075 LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
            ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   + + CL
Sbjct: 693  IKLEFEKVYFPYLLINKKRYAGLYYTRPDK--YDKMDCKGIETVRRDNCPLVANIMNTCL 750

Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK-NQPHV 1193
              +L ER  +  V  +   +     D+   ++ + + VITK L K      D K  Q HV
Sbjct: 751  KMLLIERDPDGAVRYVKEMI----SDLLCNRLDISQLVITKELAK-----DDYKAKQAHV 801

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A + K+    T    GD VPY+I       + ++       +  D +   +    ID 
Sbjct: 802  ELAEKXKKRDPGTAPKLGDRVPYVI-------TAAAKNTPAYLKSEDPIYVLENNVSIDT 854

Query: 1254 DYYASQQIHPVVSRLCASIEGTS 1276
            DYY   Q+   + R+ + I G S
Sbjct: 855  DYYLHNQLEKPLLRIFSPILGES 877


>gi|167380902|ref|XP_001735501.1| DNA polymerase delta catalytic subunit [Entamoeba dispar SAW760]
 gi|165902501|gb|EDR28305.1| DNA polymerase delta catalytic subunit, putative [Entamoeba dispar
            SAW760]
          Length = 1077

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 174/678 (25%), Positives = 297/678 (43%), Gaps = 118/678 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            +D DV  G+NI  FD   LL RA+V +V         +     + +        G   S 
Sbjct: 335  IDVDVFTGYNIMNFDFKYLLERAKVLKVKDFSSFSKLKSSHVSVRQSTFQSKAVGVRESN 394

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESL 772
             +++ + GR+  D F   +   +  SY+L  ++   L   ++EV   D+  + + +++  
Sbjct: 395  ELIN-LEGRIPFDMFQVIQHDYKLRSYTLNFVSSNFLGDQKEEVHYADITTLHEGSMDDR 453

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
              +  Y   D +L ++L+  L  L    ++  ++G      L +G + + +  L  HA  
Sbjct: 454  NRIAVYCLKDTYLPIKLLEKLMSLVNGFEMCRVTGIPLSYLLPRGQQVKVITQLYRHA-N 512

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
            AKK  +P    + + TK                  TN                   G  Y
Sbjct: 513  AKKLFIP----FFQRTK------------------TN-------------------GDKY 531

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--------------------- 930
             G  V+ P KG Y   I  LDF+SLYPSI+  +N+C++T                     
Sbjct: 532  VGATVISPIKGFYKVPISTLDFSSLYPSIMISHNLCYSTLIDGIKTRKDVPSIEFLKTSE 591

Query: 931  ------------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
                                    VE SP+G +  + SSK  G+LPE+L+NL+  R+  K
Sbjct: 592  SEEDRKMYDQIMKKLKEKQLNVEDVELSPNGDL-FVKSSKRKGILPEILENLLAARKQAK 650

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              M  A+   KI  L+ +Q ALK++ANS+YG  G    +     +A  +T  GR ++  T
Sbjct: 651  KDMAAATDPFKITVLNGRQLALKVSANSVYGFTGAQIGKLPCMQIASSVTSYGRTMIELT 710

Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+           + +V+YGDTDS+M+  G  D+A+A  +  +    V  K+ + + 
Sbjct: 711  KTTVEEKYSKKNGFPWDAQVVYGDTDSVMVKFGTPDLAEAIRLGKEAAVFVTTKFPRPIN 770

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + ++   LL+ KK+YA +     D   ++ ++ KG++ VRRD  LL K V +  L++
Sbjct: 771  LEFEKVFFPYLLISKKRYAGLYFNRVD--KWDHVDTKGIETVRRDNCLLVKYVIENVLNK 828

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            IL +   E  +  + N +     D+   ++ L   +I+KTL+K  E Y  A  Q HV++ 
Sbjct: 829  ILLDSDVEGAINFVKNMI----SDLLQNKLDLSMLIISKTLSK--EDY--AGKQAHVELV 880

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+++   +   + GD +PY+I       S       ++A  P  L   +    ID DYY
Sbjct: 881  KRIRERDKTATINTGDRIPYVII-----KSTKDAKAYEKAEDP--LYVLENNIPIDFDYY 933

Query: 1257 ASQQIHPVVSRLCASIEG 1274
               Q+   ++R+   I G
Sbjct: 934  IENQLKKPLTRIFKPILG 951


>gi|2581898|gb|AAC47776.1| DNA polymerase alpha [Leishmania infantum]
          Length = 308

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 171/338 (50%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD++               
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV-------------- 168

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                          NF       +   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 169 --------------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRESGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MK    A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKIEKDANNLAL--LEIRQKALKLTANS 308


>gi|50293371|ref|XP_449097.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528410|emb|CAG62067.1| unnamed protein product [Candida glabrata]
          Length = 1096

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 217/884 (24%), Positives = 386/884 (43%), Gaps = 156/884 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V  K+ G SW+++   K++     Q+VS C+ E+T++  +++    +    +   P+ 
Sbjct: 257  LMVDCKIVGMSWVTLPKGKYNVVSDSQKVSTCQLEVTINY-RNLISHPAEGEWSHTAPLR 315

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      +F + +    I  A+VV     K           KP + + FT+   
Sbjct: 316  ILSFDIECAGRPGIFPEPEHDRVIQIANVVNTVGEK-----------KPFIRNVFTL--- 361

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+             GS V   E+ E  LL +    + ++D DV++G+N + FD
Sbjct: 362  --DTCAPI------------TGSQVFDNET-EEDLLRKWRDFIIQVDPDVIIGYNTTNFD 406

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  ++ +  +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 407  IPYLLNRAKALKIEN--FPYFGRLKNVKQEIKESIFSSKAYGTRETKNV--NIDGRLQLD 462

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+
Sbjct: 463  LLQFVQREYKLRSYTLNAVSANFLGEQKEDVH-HSIITDLQNGDRETRRRLAVYCLKDAY 521

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L+  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 522  LPLRLLEKLMALVNYTEMARVTGIPFSYLL--ARGQQIK------------VVSQLF--- 564

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+   D    N  SH    +      Y G  V+EP +G Y
Sbjct: 565  ----------------RKCLEI---DTVIPNMHSHGSDEQ------YEGATVIEPIRGYY 599

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TV+R           +P+G    + + K 
Sbjct: 600  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVDRLNLKKEEDYIITPNGDY-FVTTKKR 658

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+  K  ++  +   K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 659  RGILPIILDELISARKRAKKDLRDETDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 718

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   V+   +++        VIYGDTDS+M+  G  D+ +A 
Sbjct: 719  CLAISSSVTSFGRVMIMETKKAVEEKYSIKNGAKHDAVVIYGDTDSVMVKFGTTDLKEAM 778

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +    V+K +K  + ++ +  Y   LL+ KK+YA +     D   Y+ +++KGL  
Sbjct: 779  ELGAEAAAFVSKLFKHPINLEFEKAYFPYLLINKKRYAGLYWTNPD--KYDKLDQKGLAS 836

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   + +  L +IL +R  +  +  +  ++    +D+   +V + K +I+KTL
Sbjct: 837  VRRDSCSLVSIIMNKVLKKILIDRDVDSALGFVKATI----DDILQNRVDISKLIISKTL 892

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+    +G + GD V Y+I       +G    +  RA
Sbjct: 893  A------PNYTNPQPHAVLAERMKKRD-GSGPNIGDRVDYVI-------TGGGDKLYNRA 938

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPS 1296
              P  L   +    ID  YY + Q+   +  + A I G              S F  K  
Sbjct: 939  EDP--LYVLEHNIQIDSRYYLTNQLQNPIISIVAPIIGDKQA---------TSMFTIKSI 987

Query: 1297 ETMSSDPSSSLLFAVGDEERYRGCE--------PLILSCPSCSS 1332
            +  + +    L+  +   E  +GC         PL  +C S SS
Sbjct: 988  KINTGNTKGGLMGFIKKVEACKGCRSPLKKGEGPLCSNCKSRSS 1031


>gi|7288074|emb|CAB81809.1| DNA polymerase [Pyrococcus glycovorans]
          Length = 775

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 181/655 (27%), Positives = 297/655 (45%), Gaps = 110/655 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ R +  + + D DV++ +N   FDL  L+ RA+          K+G       
Sbjct: 185  SSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAE----------KLG------- 227

Query: 698  PKLRKGRTIFGSGASP-----GIMSC--IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
             KL  GR     G+ P     G M+   I GR+  D +   R  +   +Y+L  + +   
Sbjct: 228  IKLPLGR----DGSEPKMQRLGDMTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIF 283

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-L 809
             K +++V  H++ + ++T + L  + +Y   DA ++ EL       P+  QL+ + G  L
Sbjct: 284  GKPKEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GREFFPMEAQLSRLVGQPL 341

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W  + + +    VE+ LL     +  + P+K                             
Sbjct: 342  WDVS-RSSTGNLVEWYLLRKAYERNELAPNK----------------------------- 371

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                          + +   +YAGG V EP+KGL++  ++ LDF SLYPSII  +N+   
Sbjct: 372  --------PDEREYERRLRESYAGGYVKEPEKGLWEG-LVSLDFRSLYPSIIITHNVSPD 422

Query: 930  TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQL 980
            T+ R        +P+  V H       G +P LLK L+  R+ +K  MK +   ++ + L
Sbjct: 423  TLNREGCMEYDVAPE--VKHKFCKDFPGFIPSLLKRLLDERQEIKRRMKASKDPIEKKML 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+K+ ANS YG  G++ +R+Y K  AE +T  GRE +      ++     +V+Y 
Sbjct: 481  DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYI 540

Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I     +  K KA+  + ++ +N K    LE++ +G Y R   + KKKYA +
Sbjct: 541  DTDGLYATIPGAKPEEIKRKAL--EFVEYINAKLPGLLELEYEGFYVRGFFVTKKKYALI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K       I  +GL++VRRDWS ++KE     L  IL   + E+ V+ +      V
Sbjct: 599  DEEGK-------IITRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVKE----V 647

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             E +   ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI
Sbjct: 648  TEKLSKYEIPPEKLVIYEQITRPLHEYKAI--GPHVAVAKRLAARG--VKVRPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            +    G        I++RA   +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 704  VLRGDGP-------ISKRAILAEEFDPRKHKY--DAEYYIENQVLPAVLRILEAF 749


>gi|2581882|gb|AAC47768.1| DNA polymerase alpha [Leishmania chagasi]
          Length = 308

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 171/338 (50%), Gaps = 65/338 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD++               
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV-------------- 168

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                          NF       +   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 169 --------------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 214

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 215 YPSLIQEFNICFTTVDRESGSKIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 272

Query: 959 VQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           V  RR VK  MK    A+ L +  L+I+Q+ALKLTANS
Sbjct: 273 VDSRREVKRLMKIEKDANNLAL--LEIRQKALKLTANS 308


>gi|268324246|emb|CBH37834.1| DNA polymerase [uncultured archaeon]
          Length = 829

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 287/646 (44%), Gaps = 115/646 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            L  +++VG+N  GFD   +  RA++  +   M +           +  KG      GA P
Sbjct: 247  LQPNIIVGYNSDGFDWPYIRERAKLYGLRLRMGAD------GSTVRFEKG------GALP 294

Query: 714  GIMSCIAGRLLCDTF-LCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            G+   I GRL  D F L  RDL       L  V+  L  + KT+    R  + P ++ + 
Sbjct: 295  GV--NIRGRLNVDLFKLAKRDLDSVKVKKLENVAEFLGVVRKTE----RVNLSPREINES 348

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE-Y 824
            +    +   L EY + DA  ++ +     +LPL  +L+ + G    +  +  R ++VE +
Sbjct: 349  WFNASARERLYEYAKADAVSALGIA--TKMLPLQIELSKMVGYPLDELAKMGRGRQVEAF 406

Query: 825  LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
            L   AF+  + + P                                             K
Sbjct: 407  LTAEAFKRGELVPP---------------------------------------------K 421

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI---CFTTVERSPDGLVPH 941
            G     + GG VL P+KGL++  ++ LDF+S+YP+I+  +NI    F       D  V  
Sbjct: 422  GGSEKTFEGGFVLPPEKGLHED-VIALDFSSMYPTIMISFNISPDTFVAATEVGDEEVYV 480

Query: 942  LPS------SKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANS 993
             P           G    ++ +L+ RRR +K  MK+   +  + + LDIQQQ++K+  NS
Sbjct: 481  APEVGYAFRKAPDGFFKRIMSDLITRRRAIKADMKSYDKASDEYRLLDIQQQSVKILTNS 540

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGID- 1052
             YG  G+S ++FY +  AE  T  GR  ++  V + + +   +VIYGDTDSI +   ++ 
Sbjct: 541  FYGYTGWSAAKFYKRECAEATTAWGRHFIKRAVKMAEES-GFKVIYGDTDSIFVKFPLEV 599

Query: 1053 -------DIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLL-KKKKYAAVKVQFKDG 1104
                    + KA+ I+ ++ +E+      LE+ L   +K +    KKK+YAA+      G
Sbjct: 600  EGDRKKAILEKAEEISARITKEL-----PLELALQDFFKTIFFTGKKKRYAALT---DTG 651

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
               E++ R GL++ R DW  L+KEV    +  IL ++  E  +  + +    V +D+  G
Sbjct: 652  ---EIVVR-GLEVRRGDWCELAKEVQTEVIELILRDKDPEKAMAYVKS----VIKDLERG 703

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
             + + K +I KTLT+   AY D K Q HV  A +   S        G  VPY+I    G 
Sbjct: 704  NLPVHKLIIYKTLTRKISAY-DTK-QAHVIAAEKALASSSHIAYEVGSKVPYVILKGAGK 761

Query: 1225 SSGSSVGIAQRARHPDELKKGDGK-WMIDIDYYASQQIHPVVSRLC 1269
            +S  +  I    R        +G+ + IDI YY   Q+ PV  R+ 
Sbjct: 762  TSDRAFPIDIMERSERNEIYAEGRIYQIDISYYLLHQVIPVAHRVL 807


>gi|255549385|ref|XP_002515746.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis]
 gi|223545183|gb|EEF46693.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis]
          Length = 1049

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 176/683 (25%), Positives = 303/683 (44%), Gaps = 103/683 (15%)

Query: 629  AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
             G +V+  ++  + LL  R  I   ++D D+++G+NI  FDL  L+ RA+   +  + + 
Sbjct: 287  VGVDVMSFDTERKVLLAWRDFIR--EVDPDIIIGYNICKFDLPYLIERAETLGI--AEFP 342

Query: 688  KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
             +GR++ S   ++R   T F S   G        + GR+  D     +   +  SYSL  
Sbjct: 343  VLGRVRNS---RVRVKDTTFSSRQYGTRESKEVTLEGRVQFDLLQAMQRDYKLSSYSLNS 399

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L++ +++V  H ++   Q    E+   L  Y   DA+L   L+  L  +    ++
Sbjct: 400  VSAHFLSEQKEDVH-HSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEM 458

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   ++ +V   LL   + K  ++P                        
Sbjct: 459  ARVTGVPMSFLLSRGQSIKVLSQLLRKAKQKNLVIP------------------------ 494

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                             N  + G    +Y G  VLE   G Y+K I  LDF SLYPSI+ 
Sbjct: 495  -----------------NVKQAGSEQGSYEGATVLEANAGFYEKPIATLDFASLYPSIMM 537

Query: 923  EYNICFTTVERS--------PDGLVPHLPSSKT-------TGVLPELLKNLVQRRRMVKT 967
             YN+C+ T+           P   V   PS +T        G+LPE+L+ L+  RR  K 
Sbjct: 538  AYNLCYCTLVTPEDVRKLNLPPECVNKTPSGETFVKPNLQKGILPEILEELLAARRRAKA 597

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K A   L+   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T 
Sbjct: 598  DLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTK 657

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
             LV++          N EVIYGDTDS+M+  G+  + +A  +  +  + ++  + K +++
Sbjct: 658  KLVEDKFTIMGGYEHNAEVIYGDTDSVMVQFGVPTVPEAMKLGREAAEYISGTFIKPIKL 717

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS--------LLSKEV 1129
            + + +Y   LL+ KK+YA +     D   ++ ++ KG     +  +        LL K +
Sbjct: 718  EFEKVYYPYLLISKKRYAGLYWTNSDK--FDKMDTKGEQSTFQPLTICXXXXNCLLVKNL 775

Query: 1130 GDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN 1189
               CL +IL +R     V+ + N++     D+   ++ L   VITK LTK  + Y     
Sbjct: 776  VTECLHKILIDRDVPGAVQYVKNTI----SDLLMNRMDLSLLVITKGLTKTGDDY--EVK 829

Query: 1190 QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKW 1249
              HV++A R+++   +T  + GD VPY+I         ++ G     R  D +   +   
Sbjct: 830  AAHVELAERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLENNI 882

Query: 1250 MIDIDYYASQQIHPVVSRLCASI 1272
             ID  YY   QI   + R+   I
Sbjct: 883  PIDPQYYLENQISKPLLRIFEPI 905


>gi|74507331|sp|Q9HH06.1|DPOL_PYRGL RecName: Full=DNA polymerase
 gi|10799899|emb|CAC12849.1| DNA polymerase [Pyrococcus glycovorans]
          Length = 775

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 181/655 (27%), Positives = 297/655 (45%), Gaps = 110/655 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ R +  + + D DV++ +N   FDL  L+ RA+          K+G       
Sbjct: 185  SSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAE----------KLG------- 227

Query: 698  PKLRKGRTIFGSGASP-----GIMSC--IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
             KL  GR     G+ P     G M+   I GR+  D +   R  +   +Y+L  + +   
Sbjct: 228  IKLPLGR----DGSEPKMQRLGDMTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIF 283

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-L 809
             K +++V  H++ + ++T + L  + +Y   DA ++ EL       P+  QL+ + G  L
Sbjct: 284  GKPKEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GREFFPMEAQLSRLVGQPL 341

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W  + + +    VE+ LL     +  + P+K                             
Sbjct: 342  WDVS-RSSTGNLVEWYLLRKAYERNELAPNK----------------------------- 371

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                          + +   +YAGG V EP+KGL++  ++ LDF SLYPSII  +N+   
Sbjct: 372  --------PDEREYERRLRESYAGGYVKEPEKGLWEG-LVSLDFRSLYPSIIITHNVSPD 422

Query: 930  TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQL 980
            T+ R        +P+  V H       G +P LLK L+  R+ +K  MK +   ++ + L
Sbjct: 423  TLNREGCREYDVAPE--VKHKFCKDFPGFIPSLLKRLLDERQEIKRKMKASKDPIEKKML 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+K+ ANS YG  G++ +R+Y K  AE +T  GRE +      ++     +V+Y 
Sbjct: 481  DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYI 540

Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I     +  K KA+  + ++ +N K    LE++ +G Y R   + KKKYA +
Sbjct: 541  DTDGLYATIPGAKPEEIKRKAL--EFVEYINAKLPGLLELEYEGFYVRGFFVTKKKYALI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K       I  +GL++VRRDWS ++KE     L  IL   + E+ V+ +      V
Sbjct: 599  DEEGK-------IITRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVKE----V 647

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             E +   ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI
Sbjct: 648  TEKLSKYEIPPEKLVIYEQITRPLHEYKAI--GPHVAVAKRLAARG--VKVRPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            +    G        I++RA   +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 704  VLRGDGP-------ISKRAILAEEFDPRKHKY--DAEYYIENQVLPAVLRILEAF 749


>gi|400602303|gb|EJP69905.1| DNA polymerase family B [Beauveria bassiana ARSEF 2860]
          Length = 1106

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 177/695 (25%), Positives = 317/695 (45%), Gaps = 120/695 (17%)

Query: 632  NVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            NV C +++             E  +L+     L  +D D+++G+NI+ FD   L++RA+ 
Sbjct: 349  NVFCLDTTSSIVATQVLEYEKEAKMLSEWQQFLITVDPDIIIGYNIANFDFPYLINRAKH 408

Query: 679  CRVPS-SMWSKI----GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
             +V     W+++     R+K +     + G     S  + G +     +L+       RD
Sbjct: 409  LKVNGFEYWTRLPSIPSRVKDTSFSSKQIGNRDTKSTNTNGRLQLDLLQLI------QRD 462

Query: 734  L-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
              LR  SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM 
Sbjct: 463  HHLR--SYTLNSVCAQFLGEQKEDVHHTMITELFNGTPESRRRLAIYCLKDAYLPQRLMD 520

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKM 849
             LS L    ++  ++G  +   L  +R Q+++++  L      +K ++P           
Sbjct: 521  KLSCLENYTEMARVTGVPFNFLL--SRGQQIKFVSQLFRKALEQKLVIP----------- 567

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                                  N   D S +          Y G  V+EP +G YD  I 
Sbjct: 568  ----------------------NMKGDPSDDQ---------YEGATVIEPTRGYYDVPIA 596

Query: 910  LLDFNSLYPSIIQEYNICFTTV----ER--------------SPDGLVPHLPSSKTTGVL 951
             LDF SLYPSI+Q +N+C+TT+    +R              +P+G +  + + +  G+L
Sbjct: 597  TLDFASLYPSIMQAHNLCYTTLITRKDRIAQFNLVKDEDYIVTPNGDM-FVTTKQRKGLL 655

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
             ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 656  AQILEELLSARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLAI 715

Query: 1011 AELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            A   T  GR+++  T D V+           + +VIYGDTDS+M+  G  ++A+A  +  
Sbjct: 716  ASSTTSFGRQMIEKTKDEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKELAEAMKLGE 775

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KGL+ VRRD
Sbjct: 776  EAAAFVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTKTEKYDKMDTKGLETVRRD 833

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL++ V +  L  IL +R  +   + + +++     D+   +V + K VITK LTK  
Sbjct: 834  NCLLAQTVIEKVLRMILIDRDVQGAQDYVKDTIA----DLLQNKVDMSKLVITKALTK-- 887

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
            E Y  +  Q HV++A R+K+    +  + GD V Y++          + G     +  D 
Sbjct: 888  EDY--SAKQAHVELAARMKKRDAGSAPALGDRVAYVMI-------RGAAGAKNFEKSEDP 938

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +   +    ID  YY   Q+   ++R+   I G +
Sbjct: 939  IYVLENNVPIDTKYYLDNQLAKPLTRIFEPILGET 973


>gi|449681697|ref|XP_004209898.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Hydra
            magnipapillata]
          Length = 1082

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 183/684 (26%), Positives = 313/684 (45%), Gaps = 95/684 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  ++ E  L       + ++D D++ G+NI  FD   LL+RA+V  VPS  +S 
Sbjct: 342  VGSQVLTYQN-ESDLFKAWSDFVNEVDPDMITGYNIVNFDFPYLLNRAKVLNVPS--FSY 398

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
            +GR+      K     T+F S A     + +        F     LLR+    SY+L  +
Sbjct: 399  LGRILSE---KTTISSTVFQSRAYGKRENKVINTTGVVQFDLLHILLRDYKLRSYTLNSV 455

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L K++KE   H ++   Q    ++   L  Y   DA L + L+  L  +    ++ 
Sbjct: 456  SYHFL-KEQKEDVHHAIISDLQNGNEQTRRRLAVYCMKDAILPLRLLDKLMCVINYMEMA 514

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL   +   +I+P                         
Sbjct: 515  RVTGVPLSYLLTRGQQVKVVSQLLRKSKEHDFILP------------------------- 549

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                               +K + G  Y G  V++P KG Y K I  LDF SLYPSI+  
Sbjct: 550  ------------------AQKIEAGDEYEGATVIDPIKGYYRKPIATLDFASLYPSIMMA 591

Query: 924  YNICFTT------VER-SPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +N+C+TT      +ER +PD  +        +  S   G+LPE+L+NL+  R+  K+ +K
Sbjct: 592  HNLCYTTLLSKCDLERMNPDEYIVTPCNHYFVKKSVRKGLLPEILENLLSARKKAKSDLK 651

Query: 971  TASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
              + + K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR+++  T  LV
Sbjct: 652  GETDIFKAKVLDGRQLALKISANSVYGFTGAQVGKLPCIEISSSVTAFGRQMIERTKQLV 711

Query: 1030 QNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            ++  N+        +VIYGDTDS+M+  G D++  +  +  +    V+ ++   ++++ +
Sbjct: 712  EDKYNIKNGYKYDSKVIYGDTDSVMVQFGPDNVPDSMELGREAAAYVSNEFIDPIKLEFE 771

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD S L  ++ + CL ++L +
Sbjct: 772  KVYYPYLLISKKRYAGLYYSKPD--TFDKMDCKGIETVRRDNSPLVAKLINTCLQKLLID 829

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R  E  V        +V  D+   ++ + + VITK LTK  E Y     Q H  +A ++K
Sbjct: 830  RDPEGAVVYTK----QVISDLLCNRIDISELVITKELTKTEEEY--GNKQAHSALAEKMK 883

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    +    GD VPY+I      + G      ++A  P  + + +    ID  +Y   Q
Sbjct: 884  KRDAGSAPKLGDRVPYVIIAGVKGAKG-----YEKAEDPIYVLENNVP--IDTKHYLEHQ 936

Query: 1261 IHPVVSRLCASIEGTSPERLADCL 1284
            +   + R+   I G +  + AD L
Sbjct: 937  LMKPLLRIFEPILGEN--KAADLL 958


>gi|320162791|gb|EFW39690.1| DNA polymerase delta1 catalytic subunit [Capsaspora owczarzaki ATCC
            30864]
          Length = 1295

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 174/706 (24%), Positives = 314/706 (44%), Gaps = 119/706 (16%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS+V+ C ++E  LL +       +D+D++ G+N+  FDL  LL+RA   +V S  +  +
Sbjct: 538  GSDVIAC-ATEHELLRKWADFFRVVDADIVTGYNVINFDLGYLLNRAATLKVAS--FPFL 594

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAK 747
            GR++  +        +    G     +  + GR   D   +  RD  LR  SY+L  ++ 
Sbjct: 595  GRIRGVKTTVRFATFSSKAYGTRENKVITMEGRCPFDVLQILQRDYKLR--SYTLNAVSA 652

Query: 748  TQLNKDRKEVGPHDVLKMFQTLE-SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
              L + +++V    + ++    E +   L  Y   DA+L + L+  L  +    ++  ++
Sbjct: 653  LFLGEQKEDVHYSHISELQNGNEQTRRRLAVYCLKDAYLPLRLLGKLMCVVNYMEMARVT 712

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G  +   L   +  +V   L    R +  ++P    +V+                     
Sbjct: 713  GVPFSYLLSRGQQIKVVSQLFRKVREQNLVIP----FVES-------------------- 748

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                              G     Y G  V+EP +G Y+  I  LDF SLYPSI+  +N+
Sbjct: 749  -----------------GGSGDTQYEGATVIEPNRGYYENPIATLDFASLYPSIMMAHNL 791

Query: 927  CFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            C+TT+               ++P G +   P+ +  GVLPE+L++L++ R+  K  +K  
Sbjct: 792  CYTTLVNPGMSNRPSEADCTKTPTGHIFVKPNLR-RGVLPEILEDLLEARKRAKNDLKKE 850

Query: 973  SG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR++++ T + V+ 
Sbjct: 851  TDKFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLEISSSVTGFGRDMIKQTQEAVEK 910

Query: 1032 NLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGL 1082
               +         VIYGDTDS+M+  G+ D   A  +  +    ++ ++ K ++++ + +
Sbjct: 911  QYTIANGYQHDARVIYGDTDSVMVEFGVPDTHTAMKLGTEAAALISAQFIKPIKLEFEKV 970

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L K +   CL ++L ER 
Sbjct: 971  YFPYLLINKKRYAGLYWTNPD--KYDKMDTKGIETVRRDNCPLVKNLIGTCLQKLLIERD 1028

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP--------------------- 1181
             E  V+   +++     D+   ++ + + VITK L+K                       
Sbjct: 1029 KEGAVQFAKDTI----SDLLCNRIDISQLVITKALSKTADDDDDGEGDGGKKSGGGGAGK 1084

Query: 1182 -EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR--- 1237
             +AY  A  Q H ++A R+++    +  + GD VPY+I           +  A+ AR   
Sbjct: 1085 KKAY--AVKQAHAELAERMRKRDAGSAPTLGDRVPYVI-----------IRAAKNARAYE 1131

Query: 1238 -HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLAD 1282
               D L   +    +D  YY   Q+   + R+   I G+  + L D
Sbjct: 1132 KSEDPLYVLEHNLPLDTAYYLENQLSKPLLRIFEPILGSRAQTLLD 1177


>gi|83282608|ref|XP_729844.1| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii
            17XNL]
 gi|23488820|gb|EAA21409.1| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii]
          Length = 1097

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 186/684 (27%), Positives = 319/684 (46%), Gaps = 102/684 (14%)

Query: 627  SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
            S  GSNV+   + E+ +L      + ++D D L G+NI  FD+  +L+R     +    +
Sbjct: 359  SIPGSNVIWF-NDEKTMLEAWNEFVIRIDPDFLTGYNIINFDIPYILNRGTALNLKKLKY 417

Query: 687  SKIGRLKRSEMPKLRKGRTI----FGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYS 741
              IGR+K   +P L K        FG+  +  I   I GR+  D + L  RD  R  SY+
Sbjct: 418  --IGRIKN--IPSLVKDANFSSKQFGTHETKEIN--INGRIQFDVYDLIKRDY-RLKSYT 470

Query: 742  LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
            L  ++   L K++KE   + ++   Q    ES   +  Y   D  L + L+  L  +   
Sbjct: 471  LNYVSFEFL-KEQKEDVHYSIMNDLQNENSESRKRIATYCIKDGLLPLRLIDKLLFIYNY 529

Query: 800  RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
             ++  ++G  +   L   +  +V   L    +   YI+P   TY+K              
Sbjct: 530  VEMARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYIIPS--TYIK-------------- 573

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                              ++ND         + G  VLEP KG Y + I  LDF SLYPS
Sbjct: 574  -----------------VNNND--------KFEGATVLEPIKGYYIEPISTLDFASLYPS 608

Query: 920  IIQEYNICFTTVERSPDGL----------VPHLPSSKTT------GVLPELLKNLVQRRR 963
            I+  +N+C++T+ ++ D +          VP   + K        GVLP +++ L++ R+
Sbjct: 609  IMIAHNLCYSTLIKNNDEISDLNKNDITTVPGKNNFKFVKGNVKRGVLPLIVEELIRARK 668

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLG-FSNSRFYAKPLAELITQQGREI 1021
             VK  MK     +    L+ +Q ALK++ANS+YG  G  +  +     +A  IT  GR +
Sbjct: 669  NVKAMMKNEQNPITKMVLNGRQLALKISANSVYGYTGAAAGGQLPCLEIATSITTFGRSM 728

Query: 1022 LRSTVDLVQ-----NN---LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY- 1072
            +  T + V+     NN    N  V+YGDTDS+M+  G +D+ +A  +     + ++K++ 
Sbjct: 729  IEKTKETVEAYYCKNNGFEHNATVVYGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFL 788

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LLL KK+YA   + + +   ++ ++ KG++ VRRD+ +L +++ + 
Sbjct: 789  HPIKLEFEKVYCPYLLLNKKRYAG--LLYTNPNKHDKMDCKGIETVRRDFCILIQQMMET 846

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L+++L E+     +E   + +    +D+ +  + +   V+TK+L K           PH
Sbjct: 847  VLNKLLIEKDLNSAIEYTKSKI----KDLLTNNIDMSLLVVTKSLGKAEY----ETRLPH 898

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A +LKQ   +T  + GD V YII   +GT      G AQ  R  D L   D    ID
Sbjct: 899  VELAKKLKQRDSATAPNVGDRVSYIII--KGTK-----GQAQYERAEDPLYVLDNNLSID 951

Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
             ++Y     +P +SR+   I   S
Sbjct: 952  HNHYLDAIKNP-LSRIFEVIMQNS 974


>gi|348559458|ref|XP_003465533.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cavia
            porcellus]
          Length = 1105

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 176/673 (26%), Positives = 305/673 (45%), Gaps = 109/673 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------L 692
            E  LL    + +  +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       +
Sbjct: 372  EEDLLQAWSLFVRTVDPDVITGYNIQNFDLPYLISRAQTLKVKG--FPLLGRVVGLPSNI 429

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQ 749
            + S     + GR          ++S + GR+  D     + LLRE    SY+L  ++   
Sbjct: 430  RDSSFQSRQMGRR------DSKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHF 479

Query: 750  LNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G
Sbjct: 480  LGEQKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTG 538

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                          + YLL                  ++ K+  Q     + +R +  + 
Sbjct: 539  V------------PLSYLLSRG---------------QQVKVVSQLLRQTMRERMLMPVV 571

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
              +   D                Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C
Sbjct: 572  KTEGGED----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLC 615

Query: 928  FTTVE----------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            +TT+                 R+P G    + SS   G+LP++L+NL+  R+  K  + +
Sbjct: 616  YTTLLRPGAAQKLGLDADQFIRTPTG-DEFVKSSVRKGLLPQILENLLSARKRAKAELAQ 674

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+
Sbjct: 675  ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVE 734

Query: 1031 NNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDG 1081
            +   +        +V+YGDTDS+M   G+  +A+A  +  +    V+  +   + ++ + 
Sbjct: 735  SKYTVANGYSADAKVVYGDTDSVMCRFGVSSVAEAMDLGREAASWVSSHFPPPIRLEFEK 794

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R
Sbjct: 795  VYFPYLLISKKRYAGLLFSSRPDS-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR 853

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E  V    +    +  D+   ++ + + VITK LT+    Y  +  Q HV++A R+++
Sbjct: 854  DPEGAVAHAKD----IISDLLCNRIDISQLVITKELTRAAADY--SGKQAHVELAERMRK 907

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                +  S GD VPY+I        G++ G+A   +  D L   +    ID  YY  QQ+
Sbjct: 908  RDPGSAPSLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 960

Query: 1262 HPVVSRLCASIEG 1274
               + R+   I G
Sbjct: 961  AKPLLRIFEPILG 973


>gi|149056046|gb|EDM07477.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_d
            [Rattus norvegicus]
 gi|149056047|gb|EDM07478.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_d
            [Rattus norvegicus]
          Length = 964

 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 167/625 (26%), Positives = 289/625 (46%), Gaps = 95/625 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 370  EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRD 429

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 430  SSFQSRQV---GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKE 483

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 484  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 542

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L  +R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 543  L--SRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 576

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 577  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + +S   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 620  PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+    LE 
Sbjct: 680  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 740  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 800  ISKKRYAGLLFSSRSDA-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 858

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 859  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 912

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIA 1233
            + GD VPY+I        G++ G+A
Sbjct: 913  NLGDRVPYVII-------GAAKGVA 930


>gi|392574795|gb|EIW67930.1| hypothetical protein TREMEDRAFT_69477 [Tremella mesenterica DSM 1558]
          Length = 1056

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 184/680 (27%), Positives = 305/680 (44%), Gaps = 105/680 (15%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +  E+ LL      + ++D D+++G+NI+ FDL  LL RA+  +  +  +  +
Sbjct: 317  GSQVLEFKD-EKQLLIEWRKFVQEVDPDMVIGYNIANFDLPYLLDRAKALK--AQEFPFL 373

Query: 690  GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
             RLK  ++E+ +       +G   S  +   + GRL  D     +   +  SY+L  +  
Sbjct: 374  SRLKGQKTEVKETHFSSKAYGQRDSKAVN--MEGRLQLDMLQVMQRDYKLRSYTLNAVCA 431

Query: 748  TQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
              L + +++V  H ++   Q  T +S   L  Y   DA+L   L+  L       ++  +
Sbjct: 432  QFLGEQKEDVH-HSIITELQNGTADSRRRLAVYCLKDAYLPQRLLDKLMSFVNYTEMARV 490

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
            +G  +   L   +  +V   L  A     YI+P          M  + S+          
Sbjct: 491  TGVPFNYLLTRGQQIKVISQLFRASADSGYIIP---------AMKSEGSDE--------- 532

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                                     Y G  V+EP KG YD  I  LDF SLYPSI+  +N
Sbjct: 533  ------------------------QYEGATVIEPTKGYYDVPIATLDFASLYPSIMMAHN 568

Query: 926  ICFT------TVERSPDGLVP-----HLP-------SSKTTGVLPELLKNLVQRRRMVKT 967
            +C+T      T+ER    LV      H P       + +  G+LP +L+NL+  R+  K 
Sbjct: 569  LCYTTLLDKGTIERLK--LVEGEDYVHTPNNDYFATTKRRKGLLPTVLRNLLDARKRAKQ 626

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K      +   LD +Q ALK++ANS+YG  G +  +     ++  +T  GR+++  T 
Sbjct: 627  DLKVEKDPFRRAVLDGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFGRQMIEFTK 686

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+           + +VIYGDTDS+M+  G  D+A A  +  +  + V+ K+ K +++
Sbjct: 687  QQVEAEFCVANGYENDAKVIYGDTDSVMVRFGTPDLATAMRLGAEAAELVSAKFIKPIKL 746

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L   V + CL ++
Sbjct: 747  EFEKVYFPYLLISKKRYAG--LYWTKTEKYDKMDTKGIETVRRDNCRLVSTVIETCLFKM 804

Query: 1138 LSER---SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
            L +R     ED V+S  + L++ + DM        + VITK L K       A  Q HV+
Sbjct: 805  LIDRDVKGAEDYVKSTISDLLQNKIDM-------SQLVITKALAKADY----AAKQAHVE 853

Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
            +A R+K+    +  + GD V Y+I   +G       G A   +  D L   +    ID  
Sbjct: 854  LAERMKKRDAGSAPALGDRVAYVII--KGIK-----GAAAYEKSEDPLYVLEHNVPIDTR 906

Query: 1255 YYASQQIHPVVSRLCASIEG 1274
            YY   Q+   + R+   I G
Sbjct: 907  YYLENQLSKPLMRIFEPILG 926


>gi|449017897|dbj|BAM81299.1| DNA polymerase delta, catalytic subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1084

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 187/676 (27%), Positives = 303/676 (44%), Gaps = 98/676 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AG  V+   + E+ LL      L   D D++ G+NI  FDL  LL+RA    + +S +  
Sbjct: 338  AGVQVISL-NREQELLQSFRNFLVAADPDIITGYNIVNFDLPYLLNRASA--IGASRFPY 394

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLA 746
            +GR+ R      R   +    G    +   I GR++ D   +  RD  LR  SYSL  ++
Sbjct: 395  LGRICRERTTMRRTRLSSSAFGTHESMTFSIEGRVIMDMLQVIIRDHKLR--SYSLNSVS 452

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               LN+ +++V  + ++   Q     +   L  Y   DA+L + LM  L  L    +L  
Sbjct: 453  SEFLNEQKEDVH-YSIITDLQAGNEHTRRRLAVYCLKDAYLPLRLMDKLMSLTNYMELAR 511

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L      +V  LL         +VPD             R+  G       
Sbjct: 512  VTGVPLDWLLSRGHMVKVVSLLHRKAHEADLLVPDL-----------PRTEAG------- 553

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                              R G  GP Y G  V+EPKKG Y   I  +DF SLYPSI+  Y
Sbjct: 554  -----------------GRSGDGGPQYEGATVIEPKKGFYRTPIATMDFASLYPSIMMAY 596

Query: 925  NICFTTVE--------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            N+C++T+               R+P G     PS +  G+L E+L+  +  R+  K  M+
Sbjct: 597  NLCYSTLVHESDVPKLKPDDYIRTPLGHCFVKPSVR-KGILSEMLEEFLASRKAAKRDMQ 655

Query: 971  TASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGR---EILRSTV 1026
             A+   +++ L+ +Q ALK++AN++YG  G S  +     ++  +T  GR   E+ RSTV
Sbjct: 656  NATDPFLREVLNGRQLALKISANAVYGFTGASVGKLPCMEISASVTSYGRNMIELTRSTV 715

Query: 1027 DLVQNNLNLEVIYGDTDSIMI----HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            + +      EVIYGDTDS+M+    H+ ++ + +    A K  Q  N     + ++ + +
Sbjct: 716  ERLYP--GAEVIYGDTDSVMVKFNDHATLEQVMELGREAAK--QLTNIFPPPVRLEFEKV 771

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIER------KGLDMVRRDWSLLSKEVGDFCLSQ 1136
            Y   LL+ KK+YA        G+ +  +ER      KG++ VRRD   L   V D  L +
Sbjct: 772  YYPYLLISKKRYA--------GLYWTRLERHDKMDCKGIESVRRDNCRLVANVVDTVLQK 823

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L E+  +  +E +     K+  D+   ++ L   V++KTLT+    Y +AK Q HV + 
Sbjct: 824  LLIEQDVDGAIEFVK----KIVSDLLQNRIDLSLLVVSKTLTRATTDY-EAK-QAHVFLV 877

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             +L++    +  S GD VPY+I        G++       R  D +   +    ID  YY
Sbjct: 878  EKLRKRDSGSAPSLGDRVPYVII------KGATKNEKAYTRAEDPIYVLENSIPIDAHYY 931

Query: 1257 ASQQIHPVVSRLCASI 1272
                +   + R+ +++
Sbjct: 932  LENMLRKPLERIFSAV 947


>gi|324120684|dbj|BAJ78733.1| DNA polymerase delta catalytic subunit [Lepidocampa weberi]
          Length = 1096

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 176/670 (26%), Positives = 307/670 (45%), Gaps = 97/670 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL--KRS 695
            + E+ LL +    + ++D D++ G+NI+ FDL  LL+RA+   + S  +S +GR+   RS
Sbjct: 367  NDEKELLEKWAEFVRQVDPDLITGYNINNFDLPYLLNRAKC--LGSKHFSFLGRVIQSRS 424

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
             +  +       G   +  I   I GR+  D  L    LLR+    SY+L  ++   L +
Sbjct: 425  VVHDVTLQSKQMGRRENKSIN--IEGRVPFDLLLV---LLRDYKLRSYTLNSVSFHFLQE 479

Query: 753  DRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++        ++   L  Y   DA+L + L+  L  +    ++  ++G   
Sbjct: 480  QKEDVH-HSIISDLHHGNAQTRRRLAIYCLKDAYLPLRLLDKLMCIINYMEMARVTGVPL 538

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
               L   +  +V   +L   + +  IVP   TY                     +    D
Sbjct: 539  SSLLTRGQQVKVMSQILRKAKTQNLIVP---TY---------------------QSKGSD 574

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
              F+                  G  V+EP KG Y+  I  LDF+SLYPSI+  +N+C+TT
Sbjct: 575  EQFE------------------GATVIEPVKGYYNVPIATLDFSSLYPSIMMAHNLCYTT 616

Query: 931  VE--------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
            +               R+P G +  + S+   G+LP++L+NL+  R+  K  +K  +   
Sbjct: 617  LVRPGLDKNLNPTDYIRTPSGNL-FVKSALRKGLLPDILENLLSARKKAKDDLKKETDPF 675

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN- 1034
            K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++  T   V+   N 
Sbjct: 676  KRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRTMIEFTKKEVEERYNR 735

Query: 1035 -------LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                    +VIYGDTDS+M+  G+  + +A A+  +  + V+ K+ + + ++ + +Y   
Sbjct: 736  SQGAEHDAQVIYGDTDSVMVKFGVQTVKEAMALGKEAAEYVSAKFVQPIRLEFEKVYFPY 795

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA   + F     ++ ++ KG++ VRRD   L  ++   CL +IL +R     
Sbjct: 796  LLINKKRYAG--LYFTRPEIHDKMDCKGIETVRRDNCPLVAKLITTCLEKILIDRD---- 849

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
                     +V  D+   +V + + VITK LTK  + Y  A  Q HV++A ++++    T
Sbjct: 850  PNGAKTHAQQVISDLLCNRVDISQLVITKELTKTDKEY--AAKQAHVELANKMRKRDAGT 907

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD VPY+I         ++ G     +  D +   +    ID  YY   Q+   + 
Sbjct: 908  APKLGDRVPYVIV-------NATKGTPAYQKAEDPIYVLENNIPIDCVYYLENQLAKPLL 960

Query: 1267 RLCASIEGTS 1276
            R+   I G S
Sbjct: 961  RIFEPILGES 970


>gi|432868483|ref|XP_004071560.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Oryzias
            latipes]
          Length = 1107

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 182/693 (26%), Positives = 317/693 (45%), Gaps = 118/693 (17%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
             S  GS +LC  + E+ LL      L  +D D++ G+NI  FD   L++RA   +V  + 
Sbjct: 367  TSIVGSQILCF-TQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLINRAAALKV--TY 423

Query: 686  WSKIGRLK-----------RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL 734
            +  +GR++           +S+    R+ +TI            + GR+  D     + L
Sbjct: 424  FPYLGRVRNMKSVLKESNFQSKQMGRRENKTI-----------NMEGRVQFDLL---QVL 469

Query: 735  LREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMEL 789
            LR+    SY+L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + L
Sbjct: 470  LRDYKLRSYTLNAVSFHFLQEQKEDV-QHSIISDLQNGNEQTRRRLAVYCLKDAYLPLRL 528

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            +  L  +    ++  ++G      L   +  +V   LL     +  ++P     V +T+ 
Sbjct: 529  LQKLMCVINYMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQNLVMP-----VVKTE- 582

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
                   G ED                              Y G  V+EP+KG Y   I 
Sbjct: 583  -------GGED------------------------------YTGATVIEPEKGYYSVPIT 605

Query: 910  LLDFNSLYPSIIQEYNICFTT------VER----------SPDGLVPHLPSSKTTGVLPE 953
             LDF+SLYPSI+  +N+C+TT      VER          +P G    + SS   G+LPE
Sbjct: 606  TLDFSSLYPSIMMAHNLCYTTLLQKGSVERLQLSSEDFIKTPTG-DQFVKSSVRKGLLPE 664

Query: 954  LLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L+NL+  R+  K  +K  +   K Q LD +Q ALK++ANS+YG  G    +     +++
Sbjct: 665  ILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQ 724

Query: 1013 LITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
             +T  GR+++  T  LV++   +        +VIYGDTDS+M+  G+  + +A  I  + 
Sbjct: 725  SVTGFGRQMIERTKQLVESKYTISNGYQADAKVIYGDTDSVMVKLGVATVKEAMEIGREA 784

Query: 1065 IQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
             + V+  +   ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD  
Sbjct: 785  AEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFS-SSADTHDKMDCKGIETVRRDNC 843

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L   + + CL +IL +R  +  V+       +V  D+   ++ + + VITK LT+  + 
Sbjct: 844  PLVANLINTCLQKILIDRDPQGAVDHAK----EVISDLLCNRIDISQLVITKELTRTAQE 899

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            Y  A  Q HV++A R+++    +  + GD VPY+          ++ G A   +  D + 
Sbjct: 900  Y--AGKQAHVELAERMRKRDAGSAPNLGDRVPYV-------IIKAAKGAAAYMKSEDPIY 950

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
              +    ID  YY  QQ+   + R+   I G S
Sbjct: 951  VLENTIPIDTQYYLEQQLSKPLLRIFEPILGES 983


>gi|389634743|ref|XP_003715024.1| DNA polymerase delta catalytic subunit [Magnaporthe oryzae 70-15]
 gi|351647357|gb|EHA55217.1| DNA polymerase delta catalytic subunit [Magnaporthe oryzae 70-15]
 gi|440470521|gb|ELQ39588.1| DNA polymerase delta catalytic subunit [Magnaporthe oryzae Y34]
 gi|440488502|gb|ELQ68227.1| DNA polymerase delta catalytic subunit [Magnaporthe oryzae P131]
          Length = 1103

 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 201/813 (24%), Positives = 356/813 (43%), Gaps = 121/813 (14%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V  K++G SW+    + ++  P  QR S C+ E  + S +D+         +++ P+ 
Sbjct: 247  FMVDCKIQGMSWVEAPAATYTLVPESQRQSNCQIEAEM-SYRDLIAHKPVGEWSKMAPL- 304

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
                              I+S  + C  +  I       E     ++    VV K  G  
Sbjct: 305  -----------------RILSFDIECAGRKGI-----FPEANMDPVIQIANVVTKY-GDK 341

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P   N    D+ S   +  +   S E+ +L+     + ++D D++ G+NI+ FD   LL
Sbjct: 342  KPFVRNVFCLDQTSPIVATQILEFSQEQKMLSSWRNFMVEVDPDIITGYNIANFDFPYLL 401

Query: 674  HRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
             RA+  +V    +WS+I  +K          + +   G      + I GRL  D     +
Sbjct: 402  DRARHLKVKDFDLWSRIPSIKSVAKESNFSSKQM---GNRDTKATNINGRLQLDLLQLIQ 458

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMF 791
               +  SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM 
Sbjct: 459  RDHQLRSYTLNSVCSHFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMD 518

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKM 849
             LS L    +++ ++G  +   L   R Q+V +L  L      +K ++P+         +
Sbjct: 519  KLSCLENYTEMSRVTGAPFNFLL--TRGQQVRFLSQLFRKALEQKLVIPN---------L 567

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
            + Q S+                                   Y G  V+EP +G YD  + 
Sbjct: 568  SVQSSDE---------------------------------QYEGATVIEPTRGYYDVPVA 594

Query: 910  LLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSKTTGVLPE 953
             LDF SLYPSI+Q +N+C+TT           +++  D +V       +   +  G+L +
Sbjct: 595  TLDFASLYPSIMQAHNLCYTTLVTKKAIDAFGLKKDEDYIVTPNGDFFVTIKQRKGLLAQ 654

Query: 954  LLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +N +     +A 
Sbjct: 655  ILEELLAARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCLEIAS 714

Query: 1013 LITQQGREILRSTVDL------VQNNL--NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
              T  GR+++  T +       V N    + +VIYGDTDS+M+  G  D+A+A  +  + 
Sbjct: 715  STTSFGRQMIEKTKEEVEKKYRVANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMKLGEEA 774

Query: 1065 IQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
               V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  
Sbjct: 775  ANYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNC 832

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
            LL + V +  L  IL ++      E +  ++ ++ ++    +V + K VITK LTK  + 
Sbjct: 833  LLVQTVIEKVLRMILIDQDVPGAQEYVKETIAELLQN----KVDMSKLVITKALTK--DD 886

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            Y  +  Q HV++A R+K+    +    GD V Y++          + G     R  D + 
Sbjct: 887  Y--SAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMI-------KGATGSKNFERSEDPIY 937

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
              +    ID  YY   Q+   + R+   I G +
Sbjct: 938  VLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 970


>gi|320037710|gb|EFW19647.1| DNA polymerase delta catalytic subunit [Coccidioides posadasii str.
            Silveira]
          Length = 1110

 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 206/822 (25%), Positives = 359/822 (43%), Gaps = 143/822 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  SK+   P  QR S C+ E  V   +D+         A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPPSKYRIVPEHQRYSNCQIEAVVHY-RDLIAHPHDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F +  +   I  A+VV  +              KP + + F     
Sbjct: 314  ILSFDIECAGRKGIFPEAHEDPVIQIANVVTRYGES-----------KPFVRNVFV---- 358

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            L+G    +  N +  D              +E+ +L      L K+D DV++G+NI+ FD
Sbjct: 359  LNGC--SLIVNTQILDF------------KTEQEMLMAWRDFLEKVDPDVIIGYNIANFD 404

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+         WS++  +        +   T F S   G      +   GR+ 
Sbjct: 405  FPYLLDRARHLNCDDFPYWSRLKNVVS------QSKDTNFSSKQMGNRDTKATNTNGRIQ 458

Query: 725  CDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  +Y+L  +    L + +++V    + +++  T +S   L  Y   
Sbjct: 459  LDLLQLIQRDHQLR--NYTLNSVCSHFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLK 516

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      +  ++P+
Sbjct: 517  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQDLVIPN 574

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                              +++ N EE                         Y G  V+EP
Sbjct: 575  ------------------LKNENGEE------------------------QYKGATVIEP 592

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHL 942
             K  YD  I  LDF SLYPSIIQ +N+C+TT      VE+           +P+G +   
Sbjct: 593  VKDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKTSVEKLKLKKDEDYIVTPNGDM-FC 651

Query: 943  PSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFS 1001
             S    G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G S
Sbjct: 652  TSKVRKGLLSQILQELLSARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGITGAS 711

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDD 1053
            N +     +A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G+ D
Sbjct: 712  NGKLPCLAIASSTTSYGRQMIMKTKDEVEARFTMANGYPYDAKVIYGDTDSVMVKFGVKD 771

Query: 1054 IAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER 1112
            IA+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA +   + +   ++ ++ 
Sbjct: 772  IAEAMKLGQEAANFVSAKFLEPIKLEFEKVYFPYLLINKKRYAGLF--WTNPNKFDKMDS 829

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            KG++ VRRD   L + V +  L +IL +R     V+   N +     D+   +V + K V
Sbjct: 830  KGIETVRRDNCRLVQTVIETVLKKILIDRD----VKGAENYVKDTIADLLQNKVDMSKLV 885

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            ITK L+K       +  Q HV++A R+++    +  + GD V Y+I          + G 
Sbjct: 886  ITKALSKSDY----SAKQAHVELAERMRKRDVGSAPTLGDRVAYVIV-------KGATGS 934

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  KNYEKSEDPIYVLENNIPIDTKYYLDNQLAKPLARIFDPILG 976


>gi|402550525|pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
            Bound To A Dsdna, In Edition Mode
          Length = 793

 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 177/650 (27%), Positives = 294/650 (45%), Gaps = 101/650 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ RL+  + + D DV++ +N   F    LL RA+   +      K+   + +  
Sbjct: 207  SSEREMIKRLVKVIREKDPDVIITYNGDNFAFPYLLKRAEKLGI------KLPLGRDNSE 260

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 261  PKMQR------MGDSLAV--AIKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 312

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              H++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G       + +
Sbjct: 313  YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWAVSRSS 370

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 371  TGNLVEWFLLRKAYERNELAPNK------------------------------------- 393

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
                  + +   +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R    
Sbjct: 394  PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 452

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                +P   V H       G +P LL NL++ R+ +K  MK +   ++ + LD +Q+A+K
Sbjct: 453  EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 510

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
            + ANS YG  G++ +R+Y K  AE +T  GR+     +DLV+  L     +V+Y DTD +
Sbjct: 511  ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESRGFKVLYIDTDGL 566

Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
               I     +  K KA+  K ++ +N K    LE++ +G Y R   + KKKYA +  + K
Sbjct: 567  YATIPGAKHEEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 624

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                   I  +GL++VRRDWS ++KE     L  IL   + ++ V+ +     +V E + 
Sbjct: 625  -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 673

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI+    
Sbjct: 674  KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 729

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            G  S  ++ I       +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 730  GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 770


>gi|296109913|ref|YP_003616862.1| DNA polymerase Pol2 [methanocaldococcus infernus ME]
 gi|295434727|gb|ADG13898.1| DNA polymerase Pol2 [Methanocaldococcus infernus ME]
          Length = 757

 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 173/639 (27%), Positives = 297/639 (46%), Gaps = 97/639 (15%)

Query: 648  MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIF 707
            +IE+ K + D++  +N   +D   L  RA+       +  K+GR    E  K+++G    
Sbjct: 198  IIEILK-NYDLIFTYNGDYYDFPFLKERAKFY----GLKVKLGR--GGEEIKIKRGVET- 249

Query: 708  GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
                       I GR+  D +  ++ LL+   Y+L  +     N ++ ++   + ++ ++
Sbjct: 250  --------KVYIPGRVHIDLYPIAKRLLKLTKYTLEDVVYNLFNVEKLKI--KNFVEYWE 299

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              +++  L+EY   DA  +   +     LPL    + I   +  +  + + +Q VEYLL+
Sbjct: 300  DKDNI--LVEYSLQDAKYTY--LIGKYFLPLEVMFSRIINQVLFEVTRMSSSQMVEYLLM 355

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
                   YIVP+K                                        +  K + 
Sbjct: 356  KRAYKLNYIVPNK-------------------------------------PSEEEYKRRV 378

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-----RSPDGLVPHL 942
              +Y GG V EP KG+++  I+ LDF SLYPSII  YNI   T++        + ++ H 
Sbjct: 379  AESYEGGYVKEPIKGIHEN-IVYLDFKSLYPSIIISYNISPDTLDCPCCKEESEKILGHW 437

Query: 943  PSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
               +  G++P  +K+LV+RR  +K  +K     K + L+ +QQ+LK+ ANS+YG L +  
Sbjct: 438  FCKRRIGLIPMTVKDLVRRRVEIKERLKKE---KDKLLNYEQQSLKILANSVYGYLAYPR 494

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +RFY K  AE+IT  GR+ +  T+   +      V+Y DTD I +    ++       A 
Sbjct: 495  ARFYNKVCAEIITFLGRKYIMETIKEAE-VFGFTVLYADTDGIFLTIKGENKEAILKKAY 553

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
              +  +N K  + +E++ +G Y R + + KKKYA +    ++G   E+I  KGL+ VRRD
Sbjct: 554  NFLNHINSKLPEDMELEFEGFYSRGIFITKKKYALIT---EEG---EII-IKGLEYVRRD 606

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
            WS ++K      L  +L E      +E     + +  + +R+ +V  E+ +I   +TK  
Sbjct: 607  WSGIAKRTQKEVLEALLKEGD----IEKAKKIIKETIKKLRNLEVDKEELIIYTQITKDL 662

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              Y      PHV++A RL + G       GD + YII   +G        +++RA+ P+E
Sbjct: 663  NEYKST--APHVELAKRLVREG--KKIKPGDVLGYIIV--KGAKQ-----VSERAKLPEE 711

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            +   +    IDI+YY   QI P + R+  S+ G S + L
Sbjct: 712  VSLDE----IDINYYIDNQILPPIIRIMESL-GVSEKEL 745


>gi|221053875|ref|XP_002261685.1| dna polymerase delta catalytic subunit [Plasmodium knowlesi strain H]
 gi|193808145|emb|CAQ38848.1| dna polymerase delta catalytic subunit,putative [Plasmodium knowlesi
            strain H]
          Length = 1096

 Score =  179 bits (455), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 212/820 (25%), Positives = 366/820 (44%), Gaps = 132/820 (16%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            +++ +K+ G SWL   K  F   P  +++S C +EI +          S +H+  +P   
Sbjct: 247  YIIDKKITGSSWLLCKKENFYIRPRHKKISNCSFEIDI----------SFEHLEPMP--- 293

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
                 L+  F +   +  I+S  + C    K+D          P  +   + +    G  
Sbjct: 294  -----LENEFQQIPKL-RILSFDIEC---IKLDGKGFPEAKNDP--IIQISSILYFQGD- 341

Query: 614  FPMG----FNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
             P+G    F     +  S  GSNV+     E+ LL+     + +LD D L G+NI  FDL
Sbjct: 342  -PIGKCSKFIFTLKECASIPGSNVIWFHD-EKTLLDAWNEFITRLDPDFLTGYNIINFDL 399

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
              +L+R     +       +GR+K   S +         FG+  +  I   I GR+  D 
Sbjct: 400  PYILNRGTALNLKK--LKMLGRIKNISSVVKDSNFSSKQFGNHETKEIN--INGRIQFDV 455

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWL 785
            +   R   +  SY+L  ++   L K++KE   + ++   Q  + ES   +  Y   D  L
Sbjct: 456  YDLIRRDYKLKSYTLNYVSFEFL-KEQKEDVHYSIMNDLQNESPESRKRIATYCIKDGIL 514

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
             + L+  L  +    ++  ++G  +   L   +  +V   L    +   Y++P   TY+K
Sbjct: 515  PLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYVIPS--TYIK 572

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                                 +NE                     Y G  VLEP KG Y 
Sbjct: 573  SG-------------------SNE--------------------KYEGATVLEPIKGYYI 593

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTVERSP---DGL-------------VPHLPSSKTTG 949
            + I  LDF SLYPSI+  +N+C++T+ ++    +GL             +  +  S   G
Sbjct: 594  EPISTLDFASLYPSIMIAHNLCYSTLVKNNSEIEGLEQEDITSIQGKSNIKFVKKSVKKG 653

Query: 950  VLPELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQALKLTANSMYGCLG-FSNSRFY 1006
            +LP +++ L+  R+ VK  +K     KI +  L+ +Q ALK++ANS+YG  G  S  +  
Sbjct: 654  ILPMIVEELIDARKKVKLLIKNEKN-KITKMVLNGRQLALKISANSVYGYTGAASGGQLP 712

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAK 1058
               +A  IT  GR ++  T + V+           N  V+YGDTDS+MI  G   IA+A 
Sbjct: 713  CLEVAVSITTLGRSMIDKTKESVEKYYNKSNGFEHNCTVVYGDTDSVMIKFGTSSIAEAM 772

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
            A+     Q ++K++   ++++ + +Y   LLL KK+YA   + +     ++ ++ KG++ 
Sbjct: 773  ALGKDAAQRISKEFLHPIKLEFEKVYCPYLLLNKKRYAG--LLYTTPEKHDKMDCKGIET 830

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD+ +L +++ +  L+++L E++ +  +E   + +    +D+ +  + +   V+TK+L
Sbjct: 831  VRRDFCILIQQMMETVLNKLLIEKNLDSAIEYTKSKI----KDLLTNNIDMSLLVVTKSL 886

Query: 1178 TKPPEAYPDAKNQ-PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
             K      D + + PHV++A +LKQ   +T  + GD V YII   +G       G AQ  
Sbjct: 887  GK-----TDYETRLPHVELAKKLKQRDSATAPNVGDRVSYIII--KGVK-----GQAQYE 934

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            R  D L   D    ID ++Y    I   +SR+   I   S
Sbjct: 935  RAEDPLYVLDNNLAIDYNHYLD-AIKNTLSRIFEVIMNNS 973


>gi|405951999|gb|EKC19859.1| DNA polymerase delta catalytic subunit [Crassostrea gigas]
          Length = 1090

 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 178/679 (26%), Positives = 305/679 (44%), Gaps = 101/679 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+  E  E  LL +    +  +D D++ G+NI  FD   +++RA   +V    +  
Sbjct: 350  VGSQVISNEK-ESDLLKKWAEFVRVVDPDIITGYNIQNFDFPYVINRANHLKVMDFTFLG 408

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSL 742
              R  RS + +     ++F S   G     +  I GR+  D     + LLR+    SY+L
Sbjct: 409  RQRDVRSVIKE-----SMFQSKQMGKRENKVINIEGRVQFDLL---QILLRDYKLRSYTL 460

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
              ++   L + +++V  H ++   Q    ++   L  Y   DA L + L+  L  +    
Sbjct: 461  NAVSFHFLQEQKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAILPLRLLDKLMCVINYM 519

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            ++  ++G      L   +  +V   LL   + +  ++P                 H VE 
Sbjct: 520  EMARVTGVPLPYLLSRGQQVKVVSQLLRKAKEQDLVLP----------------THKVET 563

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                       G  Y G  V+EP KG YD  I  LDF+SLYPSI
Sbjct: 564  ---------------------------GDEYEGATVIEPVKGFYDSPIATLDFSSLYPSI 596

Query: 921  IQEYNICFTTV----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMV 965
            +  +N+C+TT+        +GL P            + +    G+LPE+L++L+  R+  
Sbjct: 597  MMAHNLCYTTLLSQHSIQKEGLTPDQYIKTPSGNYFIKTQHRKGLLPEILEHLLSARKKA 656

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K  +   K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++  
Sbjct: 657  KADLKKETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEQ 716

Query: 1025 TVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
            T   V+ +  +        +VIYGDTDS+M   G+  +A+A  +  +    +++K+ K +
Sbjct: 717  TKTYVEEHYTIANGYQHDAKVIYGDTDSVMCKFGVGTVAEAMKLGQEAADLISEKFIKPI 776

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD S L   + + CL 
Sbjct: 777  KLEFEKVYFPYLLINKKRYAG--LYWTNPEKHDKMDCKGIETVRRDNSPLVANLINTCLQ 834

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
             IL  R  +  VE    ++     D+   ++ + + VITK LTK  + Y  A  Q HV++
Sbjct: 835  LILINRDPQGAVEYAKQAI----SDLLCNRIDISQLVITKELTKTGDEY--AGKQAHVEL 888

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+K+    +    GD VPY+I    GT      G A      D +   +    ID  Y
Sbjct: 889  AHRMKKRDPGSAPQLGDRVPYVIIA--GTK-----GSAAYMNSEDPIYVLENNIAIDTQY 941

Query: 1256 YASQQIHPVVSRLCASIEG 1274
            Y   Q+   + R+   I G
Sbjct: 942  YLENQLSKPLLRIFEPILG 960


>gi|303314745|ref|XP_003067381.1| DNA polymerase delta catalytic subunit, putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107049|gb|EER25236.1| DNA polymerase delta catalytic subunit, putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1110

 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 206/822 (25%), Positives = 358/822 (43%), Gaps = 143/822 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  SK+   P  QR S C+ E  V   +D+         A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPPSKYRIVPEHQRYSNCQIEAVVHY-RDLIAHPHDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F +  +   I  A+VV  +              KP + + F     
Sbjct: 314  ILSFDIECAGRKGIFPEAHEDPVIQIANVVTRYGES-----------KPFVRNVFV---- 358

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            L+G    +  N +  D              +E+ +L      L K+D DV++G+NI+ FD
Sbjct: 359  LNGC--SLIVNTQILDF------------KTEQEMLMAWRDFLEKVDPDVIIGYNIANFD 404

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+         WS++  +        +   T F S   G      +   GR+ 
Sbjct: 405  FPYLLDRARHLNCDDFPYWSRLKNVVS------QSKDTNFSSKQMGNRDTKATNTNGRIQ 458

Query: 725  CDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  +Y+L  +    L + +++V    + +++  T +S   L  Y   
Sbjct: 459  LDLLQLIQRDHQLR--NYTLNSVCSHFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLK 516

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      +  ++P+
Sbjct: 517  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQDLVIPN 574

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                              +++ N EE                         Y G  V+EP
Sbjct: 575  ------------------LKNENGEE------------------------QYKGATVIEP 592

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHL 942
             K  YD  I  LDF SLYPSIIQ +N+C+TT      VE+           +P+G +   
Sbjct: 593  VKDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKTSVEKLKLKKDEDYIVTPNGDM-FC 651

Query: 943  PSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFS 1001
             S    G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G S
Sbjct: 652  TSKVRKGLLSQILQELLSARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGITGAS 711

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDD 1053
            N +     +A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G+ D
Sbjct: 712  NGKLPCLAIASSTTSYGRQMIMKTKDEVEARFTMANGYPYDAKVIYGDTDSVMVKFGVKD 771

Query: 1054 IAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER 1112
            IA+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA +   + +   ++ ++ 
Sbjct: 772  IAEAMKLGQEAADFVSAKFLEPIKLEFEKVYFPYLLINKKRYAGLF--WTNPNKFDKMDS 829

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            KG++ VRRD   L + V +  L +IL +R     V    N +     D+   +V + K V
Sbjct: 830  KGIETVRRDNCRLVQTVIETVLKKILIDRD----VNGAENYVKDTIADLLQNKVDMSKLV 885

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            ITK L+K       +  Q HV++A R+++    +  + GD V Y+I          + G 
Sbjct: 886  ITKALSKSDY----SAKQAHVELAERMRKRDVGSAPTLGDRVAYVIV-------KGATGS 934

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  KNYEKSEDPIYVLENNIPIDTKYYLDNQLAKPLARIFDPILG 976


>gi|436495|gb|AAA67131.1| DNA polymerase [Pyrococcus sp.]
          Length = 775

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 181/655 (27%), Positives = 296/655 (45%), Gaps = 110/655 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ R +  + + D DV++ +N   FDL  L+ RA+          K+G       
Sbjct: 185  SSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAE----------KLG------- 227

Query: 698  PKLRKGRTIFGSGASP-----GIMSC--IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
             KL  GR     G+ P     G M+   I GR+  D +   R  +   +Y+L  + +   
Sbjct: 228  IKLPLGR----DGSEPKMQRLGDMTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIF 283

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-L 809
             K +++V  H++ + ++T + L  + +Y   DA ++ EL       P+  QL+ + G  L
Sbjct: 284  GKPKEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GREFFPMEAQLSRLVGQPL 341

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W  + + +    VE+ LL     +  + P+K                             
Sbjct: 342  WDVS-RSSTGNLVEWYLLRKAYERNELAPNK----------------------------- 371

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                          + +   +YAGG V EP+KGL++  ++ LDF SLYPSII  +N+   
Sbjct: 372  --------PDEREYERRLRESYAGGYVKEPEKGLWEG-LVSLDFRSLYPSIIITHNVSPD 422

Query: 930  TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQL 980
            T+ R        +P+  V H       G +P LLK L+  R+ +K  MK +   ++ + L
Sbjct: 423  TLNREGCREYDVAPE--VGHKFCKDFPGFIPSLLKRLLDERQEIKRKMKASKDPIEKKML 480

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+K+ ANS YG  G++ +R+Y K  AE +T  GRE +      ++     +V+Y 
Sbjct: 481  DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYI 540

Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
            DTD +   I     +  K KA+  + +  +N K    LE++ +G Y R   + KKKYA +
Sbjct: 541  DTDGLYATIPGAKPEEIKKKAL--EFVDYINAKLPGLLELEYEGFYVRGFFVTKKKYALI 598

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
              + K       I  +GL++VRRDWS ++KE     L  IL   + E+ V+ +      V
Sbjct: 599  DEEGK-------IITRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVKE----V 647

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
             E +   ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI
Sbjct: 648  TEKLSKYEIPPEKLVIYEQITRPLHEYKAI--GPHVAVAKRLAARG--VKVRPGMVIGYI 703

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            +    G        I++RA   +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 704  VLRGDGP-------ISKRAILAEEFDLRKHKY--DAEYYIENQVLPAVLRILEAF 749


>gi|324120762|dbj|BAJ78772.1| DNA polymerase delta catalytic subunit [Papilio polytes]
          Length = 1082

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 181/682 (26%), Positives = 304/682 (44%), Gaps = 98/682 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  +S E  +L R      +LD D++ G+NIS FD   L++RA+  +V    +  
Sbjct: 345  VGSQVLSFQS-ESEMLARWADFFRELDPDIITGYNISNFDWPYLINRAKHLKV--DKFDF 401

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR++  RS +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 402  LGRIRNIRSVIKDSVLQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 459

Query: 747  KTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L ++L+  L  +  + ++  
Sbjct: 460  YHFLQEQKEDVH-HSIISDLQNENEQTRRRLAMYCLKDAYLPLKLLNKLMCIINSMEMAR 518

Query: 805  ISG-NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
            ++G  L     +G + + V  LL  A  A  Y++P               + HG      
Sbjct: 519  VTGVPLVCLQTRGQQIKVVSQLLRKAKEAG-YLIP---------------AYHG------ 556

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                  D  F+                  G  V+EPK+G Y   I  LDF SLYPSI+  
Sbjct: 557  ---QGSDDQFE------------------GATVIEPKRGYYADPISTLDFASLYPSIMMA 595

Query: 924  YNICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMVKTW 968
            +N+C+TT+   P  +   L S   T               G+LPE+L++L+  R+  K  
Sbjct: 596  HNLCYTTL--VPPNMQKDLNSDDITITPTKNMFVKSNIRKGLLPEILESLLAARKKAKAD 653

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K      K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  
Sbjct: 654  LKDEKDPFKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEFTKS 713

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
             V+           +  VIYGDTDS+M+  G+  + ++  +  +  + V  K+   ++++
Sbjct: 714  EVEKKYTKSNGYKEDAVVIYGDTDSVMVKFGVKTLEESMELGREAAEFVTSKFVXPIKLE 773

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   +   CL ++L
Sbjct: 774  FEKVYYPYLLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVSNMMSTCLQKLL 831

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             +R  E  V    N   ++  D+   ++ + + VITK LTK    Y  A  Q HV++A +
Sbjct: 832  IDRDPEGAV----NYAKQIISDLLCNRIDISQLVITKELTK--NDY--AAKQAHVELAAK 883

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +K+    T    GD VPY++CC    +           +  D +   +    ID +YY  
Sbjct: 884  MKKRDPGTAPKLGDRVPYVLCCAAKNTPAY-------MKAEDPIYVLENSVPIDFNYYLE 936

Query: 1259 QQIHPVVSRLCASIEGTSPERL 1280
             Q+   + R+   I G   E L
Sbjct: 937  NQLSKPLLRIFEPILGDKAESL 958


>gi|412988964|emb|CCO15555.1| DNA polymerase delta catalytic subunit [Bathycoccus prasinos]
          Length = 1114

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 187/757 (24%), Positives = 335/757 (44%), Gaps = 111/757 (14%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V R V G +WL +    +   P  ++ S+C+ E  V   + I  ++  K+ +++ P  
Sbjct: 256  FMVDRAVVGGNWLELPAKNYRVRPQQRKASYCQIECDVMFDRFISHAAEGKY-SKLAPFR 314

Query: 554  VTAINLKTV----FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            + +++++      F    + + ++  + +   +   D+P++ + W              L
Sbjct: 315  ILSVDIECAGRKGFFPDAEQDPVIQIATLVTEQGS-DSPIIKAIWT-------------L 360

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
            D     +G   ++                 ER LL      +  +D D+L+G+NI  FD 
Sbjct: 361  DTCAPIVGAEVKSF--------------RDERELLRDWGKFMRAVDPDMLIGYNIVNFDF 406

Query: 670  DVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
              L+ RAQ   V     W +I   K+  +         +G+  S  I   I GR+  D  
Sbjct: 407  PYLIKRAQTLGVQDFPYWGRIIG-KQLTIKDTTFSSKAYGTRESKEI--TIEGRVQFDML 463

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
               +   +  SYSL  ++   L + +++V  H  +   Q  T E+   L  Y   DA+L 
Sbjct: 464  QAIQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSAISELQAGTAETRRRLAVYCLKDAYLP 522

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
              L+  L       +++ ++G      L   ++ +V   LL   R +  I+P +      
Sbjct: 523  QRLLDKLMYTYNYIEMSRVTGVPLSFLLARGQSIKVMSQLLRKARQRGLIIPAR------ 576

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
                + R N              +A  + +             AY G  VL+ K G Y+ 
Sbjct: 577  ----RDRGN------------GPNAQLEGEV------------AYEGATVLDAKAGYYEL 608

Query: 907  YILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP---------------SSKTTGVL 951
             I  LDF SLYPSI+  +N+C+ T+ +  D  V  LP               S++  G+L
Sbjct: 609  PIATLDFASLYPSIMMAHNLCYCTLVKQHD--VADLPPEAYTKAPTGDVFVKSTQFKGIL 666

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            PE+L+ L+  R+  K  +K A+  L+   LD +Q ALK++ANS+YG  G +  +     +
Sbjct: 667  PEILEELLSARKRAKQDLKKATDPLERAVLDGRQLALKISANSVYGFTGATVGQLPCLEI 726

Query: 1011 AELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +   T  GR+++  T  LV+           + EVIYGDTDS+MI     ++  +     
Sbjct: 727  SASTTAYGRQMIDHTKKLVEEKYTTANGYEGDAEVIYGDTDSVMIKFNCKELKTSMEYGL 786

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+  + K ++++ +  Y   LL+ KK+YA   + +++   +  ++ KG++ VRRD
Sbjct: 787  EAADYVSATFTKPIKLEFEKCYWPYLLISKKRYAG--LLWENSEKWTKMDTKGIETVRRD 844

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL ++V + CL++IL +R     V+ + N++     D+   ++ L   VITK LTK  
Sbjct: 845  NCLLVRQVVETCLTKILMDRDIPGAVKYVQNTI----SDLLMNKLDLSLLVITKGLTKTA 900

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            + Y  A    H ++A R+     +T    GD V Y++
Sbjct: 901  DEY--AVKAAHAELAQRMFLRDPATAPVVGDRVAYVM 935


>gi|324120722|dbj|BAJ78752.1| DNA polymerase delta catalytic subunit [Forficula hiromasai]
          Length = 1120

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 178/677 (26%), Positives = 308/677 (45%), Gaps = 109/677 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SKIGRLKRSEMP 698
            E  LLN     +  +D D++ G+NI+ FDL  +L+RA+  +V    + S+I  +      
Sbjct: 395  ESELLNEWASFVRLVDPDIITGYNINNFDLPYILNRAKHLKVDKFAYLSRIKNICSVVKS 454

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
            K+ + + +   G        + GR+  D +L    L+RE     Y+L  ++   L + ++
Sbjct: 455  KMLQSKQM---GQRENKYVNLEGRVPFDMYLV---LIREYKLRQYTLNAVSYHFLQEQKE 508

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGK 812
            +V  H ++   Q    ++   L  Y   DA L + L+  L       +++ ++G +L   
Sbjct: 509  DVH-HSIISELQNGNAQTRRRLAIYCLKDALLPLRLLDKLMSFINYMEMSRVTGVSLSSL 567

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
              +G + + V  LL H+ RA+ Y++P                                  
Sbjct: 568  LTRGQQVKVVSQLLRHS-RARGYLMPA--------------------------------- 593

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-V 931
                     H        + G  V+EP++G Y   I  LDF+SLYPSI+  +N+C+TT V
Sbjct: 594  ---------HTXSAGDEQFEGATVIEPRRGYYPHPIATLDFSSLYPSIMMAHNLCYTTLV 644

Query: 932  ERSPDGLVP-----HLP-------SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQ 978
              +   +VP     H P       +S   G+LPE+L++L+  R+  K  +K  +   K Q
Sbjct: 645  PPNKRNIVPADQLTHTPANNLFVKASVRKGLLPEILEDLLAARKQAKADLKNETDPFKKQ 704

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-- 1036
             LD +Q ALK++ANS+YG  G    R     ++  +T  GR+++ ST   V+N  N+   
Sbjct: 705  VLDGRQLALKISANSVYGFTGAQVGRLPCLEISSSVTAYGRQMIESTKQEVENKYNVSNG 764

Query: 1037 ------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLL 1089
                  VIYGDTDS+M++ G+ DIA+A  +  +    V+ K+   ++++ + +Y   LL+
Sbjct: 765  YDHDSMVIYGDTDSVMVNFGVKDIAEAMRLGKEAADYVSAKFINPIKLEFEKVYYPYLLI 824

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KK+YA +     D   ++ ++ KG++ VRRD   L   V +  L ++L +R  +  VE 
Sbjct: 825  NKKRYAGLYFTRPDK--HDKMDCKGIETVRRDSCPLVASVMNTSLEKLLIDRDPDGAVEY 882

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
            +   + +    +   ++ + K V+TK L K       A  Q HV++A ++++    T   
Sbjct: 883  VKYIIAQ----LLCNKIDISKLVVTKELAK----VDYAGKQAHVELANKMRKRDAGTAPK 934

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYYASQQIHP 1263
             GD VPY+              IA     P  +K  D  ++      ID  YY   Q+  
Sbjct: 935  LGDRVPYVF-------------IAGPKNTPAYMKVEDPIYVLENNIPIDFSYYLDNQLSK 981

Query: 1264 VVSRLCASIEGTSPERL 1280
             + R+   I G   E +
Sbjct: 982  PLLRIFEPILGDRAESI 998


>gi|324120682|dbj|BAJ78732.1| DNA polymerase delta catalytic subunit [Metriocampa sp. 44]
          Length = 1115

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 180/671 (26%), Positives = 311/671 (46%), Gaps = 101/671 (15%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            SE  LL      + ++D D+L G+NI+ FDL  LL+RA+   +    +  +GR+  + M 
Sbjct: 387  SEVQLLESWASFVRQVDPDLLTGYNINNFDLPYLLNRAR--HLHCKHFHYLGRINNT-MS 443

Query: 699  KLRKG---RTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNK 752
             +R+        G   +  I   I GR+  D  L    LLR+    SY+L  ++   L++
Sbjct: 444  CVRESMLQSKQMGRRENKNIN--IEGRVTFDLLLV---LLRDYKLRSYTLNSVSFHFLSE 498

Query: 753  DRKEVGPHDVLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
             +++V  H ++    +   ++   L  Y   DA+L + L+  L  +    ++  ++G   
Sbjct: 499  QKEDVH-HSIISDLHYGNAQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVPL 557

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
               L   +  +V   +L   R +K +VP   TY               + R  +E     
Sbjct: 558  SFLLTRGQQVKVMSQILRKAREQKLVVP---TY---------------QSRASDE----- 594

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
                                + G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT
Sbjct: 595  -------------------QFEGATVIEPNKGYYDVPIATLDFSSLYPSIMMAHNLCYTT 635

Query: 931  V--------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
            +               R+P G +  + S+   G+LPE+L+NL+  R+  K  +K      
Sbjct: 636  LLAPGSEKTLGAEDFVRTPSGNL-FVKSTLRKGLLPEILENLLAARKKAKEELKNEKDPF 694

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL-- 1033
            + + LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++  T   V+     
Sbjct: 695  RCKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRTMIELTKKEVEARYST 754

Query: 1034 ------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                  + +VIYGDTDS+M+  G+  +A+A  +  +  + V+ K+   ++++ + +Y   
Sbjct: 755  SQGAEQDAKVIYGDTDSVMVRFGVQTVAEAMKLGKEAAEFVSTKFIPPIKLEFEKVYFPY 814

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA   + F     ++ ++ KG++ VRRD   L  ++   CL +IL +R  +  
Sbjct: 815  LLINKKRYAG--LYFTRPEIHDKMDCKGIETVRRDNCPLVAKLISTCLQKILVDRDPQGA 872

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
             +       +V  D+   +V + + VITK LTK  + Y     Q HV++A ++++    T
Sbjct: 873  KQHAQ----QVISDLLCNRVDISQLVITKELTKTDKEY--TAKQAHVELAHKMRKRDAGT 926

Query: 1207 GCSAGDTVPYIICCE-QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVV 1265
                GD VPYII    +GT +       Q+A  P  +   +    ID  YY   Q+   +
Sbjct: 927  APKLGDRVPYIIAMAVKGTPA------YQKAEDP--IYVLENNIPIDSLYYLENQLAKPL 978

Query: 1266 SRLCASIEGTS 1276
             R+   I G S
Sbjct: 979  LRIFEPILGES 989


>gi|123496446|ref|XP_001326973.1| polymerase zeta subunit [Trichomonas vaginalis G3]
 gi|121909895|gb|EAY14750.1| polymerase zeta subunit, putative [Trichomonas vaginalis G3]
          Length = 1045

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 173/659 (26%), Positives = 297/659 (45%), Gaps = 85/659 (12%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR--SE 696
            +E+ LL      +  +D +++ G+NI GFD+  L+ R+    + ++ + ++GR  +  S 
Sbjct: 310  NEKDLLINFQRFIQWVDPEIITGYNICGFDIPYLVERS--IAIKANEFCELGRYVKEFST 367

Query: 697  MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
              +  KG    G   +  +   I GR+  D  +  ++  +  SYSL  ++  Q   D+KE
Sbjct: 368  CKETTKGTKQLGYRETKDVD--INGRIQYDMMIAIKNDFKLRSYSLNAVS-AQFIGDQKE 424

Query: 757  VGPHDVLKMFQTLESL--MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
               + ++   Q         L  Y   DA+L ++LM  L  +  T +L+ +        L
Sbjct: 425  DVHYSMISKLQNGSDTDRHRLAIYCVKDAYLPLQLMNKLLSVLTTIELSRVCHVPVNYVL 484

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
               +  RV   +L+    +  I+P          +  Q+S+                   
Sbjct: 485  NRGQQIRVFSQILYKSVRRNLIIP---------ALTSQKSDD------------------ 517

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
                            Y G  V+EP  G Y   I  LDFNSLYPSI+  +NIC++T+   
Sbjct: 518  ---------------QYQGATVIEPSTGYYTTPIPTLDFNSLYPSIMIGHNICYSTLMTK 562

Query: 935  PDGLVPHLPS---------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQ 984
            PD  V +  S          +  GVLPE+LK L+  R+  K  M+ A+  ++ +  D +Q
Sbjct: 563  PDPNVQYEKSPNHCFFAKHDEFPGVLPEILKELLAARKATKKLMEEATDPMQKKVFDKRQ 622

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G +  +     ++E +T  GR ++  T +LV+N  N +        
Sbjct: 623  LALKISANSVYGFTGATVGKLPCLQISESVTAYGRSMIEMTKELVENKYNKQNGYSDDAH 682

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYA 1095
            VIYGDTDS+M++ G   + +A     +    V+  +   + ID +  YK  LL+ KK YA
Sbjct: 683  VIYGDTDSVMVNFGNITLEEAIKRGKEAANYVSDHFPPPIHIDFEKAYKPYLLISKKHYA 742

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
               + + + + Y+ I+ KG++ VRRD   L + +    L+ +L +   ED   S    + 
Sbjct: 743  G--LLWTNHIKYDKIDAKGIEAVRRDNCRLVQGLVQKVLTLLLVK---ED-PGSAKVFVK 796

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            K+  D+ S  + L   VI+K L+K  + Y     Q HV++A R+ +    +    GD +P
Sbjct: 797  KIVSDLVSDHIDLSFLVISKGLSKKADQY--KGKQAHVELADRMMKRDPGSAPRMGDRIP 854

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +++C     + G         +  D +   +    ID  YY   Q+   ++RL   I G
Sbjct: 855  FVMCDVGNGAKGYE-------KSEDPIWALEHSIPIDTKYYLENQLSGPLNRLFGPIIG 906


>gi|403213728|emb|CCK68230.1| hypothetical protein KNAG_0A05660 [Kazachstania naganishii CBS 8797]
          Length = 1095

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 198/817 (24%), Positives = 359/817 (43%), Gaps = 139/817 (17%)

Query: 497  LVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            +V   + G SW+++  +K+   P  Q+VS  + E+T++   D+    +    +   P+ +
Sbjct: 257  MVDCSIVGMSWITLPKTKYKLIPENQKVSTAQLEVTINH-HDLISHPAEGKWSHTAPLRI 315

Query: 555  TAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
             + +++      +F + ++   I  A+VV    AK           KP + + FTV    
Sbjct: 316  LSFDIECAGRVGIFPEPEEDPVIQIANVVSEAGAK-----------KPFIRNVFTV---- 360

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                 P+             GS +     +E+ +L+     + ++D DV++G+N + FD+
Sbjct: 361  -HSCAPI------------TGSQIFA-HDTEQQMLSHWRDFIVEVDPDVIIGYNTTNFDI 406

Query: 670  DVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
              L++RA+  +V +  +   GRL   + E+         +G+ +S  +   I GRL  D 
Sbjct: 407  PYLINRARALKVAN--FPYFGRLSNVKQEIKDSVFSSKAYGTRSSKNV--NIDGRLQLDL 462

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLS 786
                +   +  SY+L  ++   L + +++V    +  +F+   E+   L  Y   DA+L 
Sbjct: 463  LQFVQREYKLRSYTLNAVSAHFLGEQKEDVHHSIITDLFKGDSETRRRLAVYCLKDAYLP 522

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            + L+  L  L    ++  ++G  +   L   +  +V   L         ++P+       
Sbjct: 523  LRLLEKLMALVNYTEMARVTGVPFSYLLSRGQQIKVVSQLFRKCLEIDTVIPN------- 575

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
              M  Q S+                                   Y G  V+EP +G YD 
Sbjct: 576  --MQSQASDE---------------------------------QYEGATVIEPIRGYYDV 600

Query: 907  YILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT-T 948
             I  LDFNSLYPSI+  +N+C+T      TVER           +P+G   +  + K   
Sbjct: 601  PIATLDFNSLYPSIMMAHNLCYTTLCNKATVERMNLKKDEDYIITPNG--DYFVTDKLRR 658

Query: 949  GVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +L  L+  R R  K         K   L+ +Q ALK++ANS+YG  G +  +   
Sbjct: 659  GILPIILDELISARSRAKKDLRDEKDSFKRDVLNGRQLALKISANSVYGFTGATVGKLPC 718

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKA 1059
              ++  +T  GR+++ +T + VQ   ++E        V+YGDTDS+M+  G +D+ +   
Sbjct: 719  LAISSSVTSFGRDMIMTTKNAVQKKYSIENGYKHDAVVVYGDTDSVMVKFGSNDLKEVMD 778

Query: 1060 IAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +    V+  +K  + ++ +  Y   LL+ KK+YA +     D   Y+ +++KGL  V
Sbjct: 779  LGTEAAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDH--YDKLDQKGLASV 836

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD   L   V +  L +IL ER+    ++ +  ++     D+   +V + K +I+KTL 
Sbjct: 837  RRDSCSLVSIVMNKVLKKILIERNVPGALDFVKQTI----NDILQNRVDISKLIISKTLA 892

Query: 1179 KPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
                  P+  N QPH  ++ R+K+     G + GD V Y+I       +G +  +  RA 
Sbjct: 893  ------PNYTNPQPHAVLSDRMKKRD-GMGPNVGDRVDYVI-------TGGNDKLYNRAE 938

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 939  DP--LYVLEHNLQVDSKYYLTNQLQNPIISIVAPIIG 973


>gi|324120688|dbj|BAJ78735.1| DNA polymerase delta catalytic subunit [Petrobiellus takunagae]
          Length = 1005

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 181/681 (26%), Positives = 311/681 (45%), Gaps = 97/681 (14%)

Query: 633  VLCCE----SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            ++ CE    + E  LL R    + + D D++ G+NI+ FD   LL+RAQ   V    +  
Sbjct: 266  IVGCEVLSFAREAELLKRWADFVREADPDIVTGYNINNFDFPYLLNRAQHLGVKD--FPF 323

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  R+ + +        G   +  I +   GR+L D  L      +  SY+L  ++
Sbjct: 324  LGRIKDIRTVVKETVLQSKQLGRRENKFINT--EGRVLFDLLLVLVREYKLRSYTLNAVS 381

Query: 747  KTQLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q   S     L  Y   D++L + L+  L  +    ++  
Sbjct: 382  FHFLQEQKEDVQ-HSIISDLQNGNSQTRRRLAVYCLKDSYLPLRLLDKLMCIINYMEMAR 440

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   R K +++P   TY                     
Sbjct: 441  VTGVSLPSLLTRGQQIKVVSQLLRKAREKDFVIP---TY--------------------- 476

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            + T  D                    Y G  V+EP++G YD  I  LDF+SLYPSI+  +
Sbjct: 477  QGTGSDEQ------------------YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAH 518

Query: 925  NICFTTVER----SPDGLVPHL-----------PSSKTTGVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+ +    +  GL P L            S+   G+LPE+L++L+  R+  K  +
Sbjct: 519  NLCYTTLLQPGWVNKLGLTPDLYVETPAGSMFVKSTVRKGLLPEILESLLAARKKAKEDL 578

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  L+ + LD +Q ALK++ANS+YG  G    +     ++  +T  GR+++  T   
Sbjct: 579  KKETDPLRCKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRQMIEFTKQQ 638

Query: 1029 VQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+N          N +VIYGDTDS+M+  G+  +A+A  +  +    V+ K+ K ++++ 
Sbjct: 639  VENKFCVENGYSHNAKVIYGDTDSVMVRFGVSTVAEAMVLGKEGADYVSSKFIKPIKLEF 698

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   ++ ++ KGL+ VRRD       +   CL ++L 
Sbjct: 699  EKVYFPYLLINKKRYAGLYFTRPD--VHDKMDCKGLETVRRDNCTFVANIMSMCLQKLLI 756

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER+    ++ +     +V  D+   +V + + VITK LTK    Y  A  Q HV++A ++
Sbjct: 757  ERNPTGAIDYVK----QVISDLLCNRVDISQLVITKELTK--NDY--AAKQAHVELANKM 808

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            ++    T    GD VPY+I         ++ G     +  D +   +    ID  YY   
Sbjct: 809  RKRDAGTAPKLGDRVPYVIV-------AAAKGTPAYNKAEDPIYVLENSIPIDALYYLEN 861

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + R+   I G   E +
Sbjct: 862  QLSKPLLRIFEPILGDKAESI 882


>gi|19112916|ref|NP_596124.1| DNA polymerase delta catalytic subunit Cdc6 [Schizosaccharomyces
            pombe 972h-]
 gi|12644199|sp|P30316.2|DPOD_SCHPO RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=DNA polymerase III
 gi|6048293|emb|CAB58156.1| DNA polymerase delta catalytic subunit Cdc6 [Schizosaccharomyces
            pombe]
          Length = 1086

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 174/656 (26%), Positives = 293/656 (44%), Gaps = 104/656 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---G 710
            +D DVL+G+NI  FD+  LL RA+  R+ +  +  +GR+       + K  T F S   G
Sbjct: 372  VDPDVLIGYNICNFDIPYLLDRAKSLRIHN--FPLLGRIH--NFFSVAK-ETTFSSKAYG 426

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--T 768
                  + I GRL  D     +   +  SYSL  +    L + +++V  + ++   Q  T
Sbjct: 427  TRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVH-YSIITDLQNGT 485

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             +S   L  Y   DA+L   LM  L       ++  ++G  +   L  AR Q+++ +   
Sbjct: 486  ADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL--ARGQQIKVI--- 540

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                              +++ ++   H +   N+                   R     
Sbjct: 541  ------------------SQLFRKALQHDLVVPNI-------------------RVNGTD 563

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-------------- 934
              Y G  V+EP KG YD  I  LDF+SLYPSI+Q +N+C+TT+  S              
Sbjct: 564  EQYEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDY 623

Query: 935  ---PDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
               P+G   + PH+      G+LP +L +L+  R+  K  +K  +   K   LD +Q AL
Sbjct: 624  SVTPNGDYFVKPHV----RKGLLPIILADLLNARKKAKADLKKETDPFKKAVLDGRQLAL 679

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIY 1039
            K++ANS+YG  G +N R     ++  +T  GR+++  T D+V+    +E        VIY
Sbjct: 680  KVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIY 739

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M+  G+  + +A  +  +    V+ ++   ++++ + +Y   LL+ KK+YA + 
Sbjct: 740  GDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLF 799

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
                D   Y+ ++ KG++ VRRD   L   V D  L ++L ++     VE       KV 
Sbjct: 800  WTRTD--TYDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQD----VEGAQLFTKKVI 853

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+   ++ + + VITK L+K       A    HV++A R+++    +  + GD V Y+I
Sbjct: 854  SDLLQNKIDMSQLVITKALSKTDY----AAKMAHVELAERMRKRDAGSAPAIGDRVAYVI 909

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                      + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 910  I-------KGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILG 958


>gi|324120690|dbj|BAJ78736.1| DNA polymerase delta catalytic subunit [Nipponatelura sp. 66-1]
          Length = 1006

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 172/666 (25%), Positives = 302/666 (45%), Gaps = 93/666 (13%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RS 695
            S E  LL +    + ++D D+  G+NI+ FDL  LL+RA+   V  + +  +GR+K  +S
Sbjct: 271  SKESELLEKWADFVREVDPDIFTGYNINNFDLPYLLNRAKHLNV--NYFHYLGRIKNIKS 328

Query: 696  EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
             + +        G   +  I +   GR+  D  L      +  SY+L  ++   L + ++
Sbjct: 329  VVKEQVLQSKQLGRRENKNINT--EGRVPFDLLLVLVRDYKLRSYTLNAVSYHFLLEQKE 386

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H V+   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G      
Sbjct: 387  DVH-HSVITDLQNGNPQTRRRLAVYCLKDAYLPLRLLEKLMCIINYMEMARVTGVPLSCL 445

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   +  +V   LL   R K +++P     V+E +                         
Sbjct: 446  LTRGQQIKVVSQLLRKAREKDFVIPTYSVGVQEEQ------------------------- 480

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                             Y G  V+EPK+G Y   I  LDF+SLYPSI+  +N+C+T++  
Sbjct: 481  -----------------YEGATVIEPKRGYYADPIATLDFSSLYPSIMMAHNLCYTSLLQ 523

Query: 932  --ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
               +   GL P            + +S   G+LPE+L+NL+  R+  K  +K  +  L+ 
Sbjct: 524  GSVKDKLGLTPDQYTKTPAGNFFVKTSVRKGLLPEILENLLAARKKAKADLKDETDPLRR 583

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+    +  
Sbjct: 584  KVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVERKYCIAN 643

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                   VIYGDTDS+M+  G+  + KA A+  +  + V+ K+ K ++++ + +Y   LL
Sbjct: 644  GFYHDAVVIYGDTDSVMVKFGVKSLEKAMALGREAAEYVSSKFIKPIKLEFEKVYFPYLL 703

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA   + F     Y+ ++ KGL+ VRRD   L   + + CL ++L +R  +  V 
Sbjct: 704  INKKRYAG--LYFTKADTYDKMDCKGLETVRRDNCPLVANMMNTCLQKLLIDRDPDGAVS 761

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
                   +V  D+   ++ + + VITK L K       A  Q HV++A ++K+    T  
Sbjct: 762  YAK----QVIADLLCNRIDISQLVITKELAKSDY----AARQAHVELANKMKKRDPGTAP 813

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
              GD VPY++         ++ G     +  D +   +    ID +YY   Q+   + R+
Sbjct: 814  KLGDRVPYVLI-------SAAKGTPAYMKAEDPIYVLENSIPIDSNYYLENQLSKPLLRI 866

Query: 1269 CASIEG 1274
             + + G
Sbjct: 867  FSPVLG 872


>gi|402465776|gb|EJW01441.1| DNA polymerase (pol2) [Edhazardia aedis USNM 41457]
          Length = 751

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 153/300 (51%), Gaps = 87/300 (29%)

Query: 793  LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
            L++L L++QLT ISGNL  KT+  ARA+R EYLLLH    K Y+ P      KE      
Sbjct: 459  LNILELSKQLTEISGNLLIKTMHNARAERNEYLLLHECYEKNYLFPPNIKDFKER----- 513

Query: 853  RSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLD 912
                                                  Y+GGLVL+P  G ++  ILLLD
Sbjct: 514  -------------------------------------TYSGGLVLQPVVGFHENLILLLD 536

Query: 913  FNSLYPSIIQEYNICFTTV------------ERSPDGLV-----------PHLPSSKTT- 948
            F+SLYPSIIQE+NICF+T+            E++ + L              + S KTT 
Sbjct: 537  FSSLYPSIIQEHNICFSTIGLFDDESSCNFKEKNQEELKIFFTDLENKYKNQMNSEKTTT 596

Query: 949  --------------------GVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
                                G LP +L NLV RRR VK  MK TA   ++  L+ +Q+AL
Sbjct: 597  SENNNLSARNLSKLEIVDMMGFLPRILYNLVSRRRAVKDLMKSTADKQQLMLLETRQKAL 656

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            KLTANS+YGCLG + SRF    +A  IT +GRE+L+ T ++ +N L ++VIYGDTDSIMI
Sbjct: 657  KLTANSIYGCLGANFSRFCNFTMASYITYKGRELLKETKEIAENLLKMKVIYGDTDSIMI 716


>gi|148690787|gb|EDL22734.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform CRA_f
            [Mus musculus]
          Length = 964

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 168/625 (26%), Positives = 289/625 (46%), Gaps = 95/625 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V       ++  L+ +   
Sbjct: 372  EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRD 431

Query: 699  KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRK 755
               + R +   G     +  + GR+  D     + LLRE    SY+L  ++   L + ++
Sbjct: 432  SSFQSRQV---GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKE 485

Query: 756  EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G   G  
Sbjct: 486  DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 544

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
            L   R Q+V+ +                     +++ +Q    G+    V+    ED   
Sbjct: 545  L--TRGQQVKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED--- 578

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
                             Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R
Sbjct: 579  -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 621

Query: 934  S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
                      PD  +        + SS   G+LP++L+NL+  R+  K  + +    L+ 
Sbjct: 622  PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 681

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E 
Sbjct: 682  QVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
                   V+YGDTDS+M   G+  +A+A ++  +    V+  +   + ++ + +Y   LL
Sbjct: 742  GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L +IL +R  +  V 
Sbjct: 802  ISKKRYAGLLFSSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 860

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
               +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  
Sbjct: 861  HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 914

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIA 1233
            S GD VPY+I        G++ G+A
Sbjct: 915  SLGDRVPYVII-------GAAKGVA 932


>gi|440293443|gb|ELP86560.1| DNA polymerase delta catalytic subunit, putative [Entamoeba invadens
            IP1]
          Length = 1078

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 167/681 (24%), Positives = 306/681 (44%), Gaps = 121/681 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKG---RTIFGSG 710
            +D D+  G+NI  FD + L+ RA   +V    + +  RL++S +  +++G       G+ 
Sbjct: 334  IDVDIFTGYNIMNFDFNYLITRANTLKVKD--FGRFSRLRKSNVT-MKQGTFQSKAVGTR 390

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TL 769
             S  ++  + GR+  D F   +   +  SY+L  ++   L   +++V   D+  +   + 
Sbjct: 391  ESFELIG-LEGRIPFDMFQVIQRDYKLRSYTLNFVSSNFLGDQKEDVHYSDIADLHNGSP 449

Query: 770  ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLH 828
            +    +  Y   D +L + L+  L  L    ++  ++G      L +G + + +  L  H
Sbjct: 450  DDRNRIAVYCLKDTYLPIRLIKKLMSLVNGVEMCRVTGIPLSYLLPRGQQVKVITQLYRH 509

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
            A   K +++P                                            R    G
Sbjct: 510  A-NDKHFLIPFY-----------------------------------------QRPSGEG 527

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------------------ 930
              Y G  V+ P KG Y   I +LDF+SLYPSI+  +N+C++T                  
Sbjct: 528  DKYVGATVINPIKGFYRDPISVLDFSSLYPSIMISHNLCYSTLIEGVKTRVDVKNIEDLK 587

Query: 931  ---------------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
                                       VE SP+G +  + S+K  G+LPE+L+NL+  R+
Sbjct: 588  TSGEQSDKNAYDQIVKKCLEKHLSLDDVELSPNGDL-FVRSNKQKGILPEILENLLAARK 646

Query: 964  MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
              K  M       KI+ L+ +Q ALK++ANS+YG  G    +     +A  +T  GR ++
Sbjct: 647  QAKKDMAAEKDEFKIKVLNGRQLALKISANSVYGFTGAQVGKLPCMQIASSVTSYGRTMI 706

Query: 1023 RSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
              T + V+ + ++        +V+YGDTDS+M+  G  D+ +A  +  +  + V  K+ K
Sbjct: 707  ELTKNTVETHYSIKNGFAYDAKVVYGDTDSVMVKFGTSDLKEAIRVGKEAAEYVTSKFPK 766

Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             + ++ + ++   LL+ KK+YA   V + +   Y+ ++ KG++ VRRD  +L K V + C
Sbjct: 767  PINLEFEKVFWPYLLISKKRYAG--VFWCNAEKYDHLDTKGIETVRRDNCMLVKYVIERC 824

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
            L  IL ++  +++  ++      ++E +   ++ L   +I+KTL+K  E+Y  A  Q HV
Sbjct: 825  LDLILLDKEKDNITRAVQFVKDTIRE-LLQNKLDLSMLIISKTLSK--ESY--AAKQAHV 879

Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
            ++A R+++   S   + GD +PY+I       S       ++A  P  + + D    ID 
Sbjct: 880  ELANRMRERDKSVLINLGDRIPYVI-----VKSTKEARAYEKAEDPMYVLQKD--IPIDF 932

Query: 1254 DYYASQQIHPVVSRLCASIEG 1274
            +YY   Q+   ++R+   I G
Sbjct: 933  EYYIENQMRKPLTRIFRPILG 953


>gi|324120718|dbj|BAJ78750.1| DNA polymerase delta catalytic subunit [Oyamia lugubris]
          Length = 1111

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 169/673 (25%), Positives = 310/673 (46%), Gaps = 89/673 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G  VL  ++ ER +L +    + ++D D++ G+NI+ FDL  L++RA+   + ++ +  
Sbjct: 372  VGCQVLSYDN-EREMLLKWSEFVREVDPDIITGYNINNFDLPYLINRAK--HLKAAHFPY 428

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+   +     +      +G     +  I GR+  D  +      +  SY+L  ++  
Sbjct: 429  LGRITNIQSVIKEQVMQSKQTGRRENKLINIEGRVPFDLLMVLVRDYKLRSYTLNAVSYH 488

Query: 749  QLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H+++   Q    ++   L  Y   DA+L + L+  L  +    ++  ++
Sbjct: 489  FLQEQKEDVH-HNIISDLQNGNPQTRRRLAIYCLKDAYLPLRLLDKLMCVINYMEMARVT 547

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G   G  L   +  +V   LL   + K Y++P   TY        Q S  G E       
Sbjct: 548  GVSLGSLLTRGQQIKVVSQLLRKAKEKGYLMP---TY--------QHSGGGDEQ------ 590

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    + G  V+EP+KG Y   I  LDF+SLYPSI+  +N+
Sbjct: 591  ------------------------FEGATVIEPRKGYYSDPIATLDFSSLYPSIMMAHNL 626

Query: 927  CFTT---------VERSPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
            C+TT         +E +PD  V        + ++   G+LPE+L++L+  R+  K  +K 
Sbjct: 627  CYTTLLQGGIKEKLELTPDQYVKTPAGNFFVTAAVRKGLLPEVLESLLAARKHAKEELKQ 686

Query: 972  ASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
             +   + + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+
Sbjct: 687  ETDPFRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQEVE 746

Query: 1031 NNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDG 1081
               ++         VIYGDTDS+M+  G+  + +A  +  +  + V++K+   ++++ + 
Sbjct: 747  QKYSVTNGYEHDAMVIYGDTDSVMVKFGVKTLEEAMELGREAAKFVSEKFVNPIKLEFEK 806

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V + CL ++L +R
Sbjct: 807  VYFPYLLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNCPLVVNVMNMCLQKLLIDR 864

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              +  +        +V  D+   +V + + V+TK L K  + Y  A  Q HV++A ++++
Sbjct: 865  DPDGALLYAK----QVISDLLCNRVDISQLVVTKELAK--QNY--AAKQAHVELAAKMRK 916

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
                T    GD VPY+I         ++      A+  D +   +    ID  YY   Q+
Sbjct: 917  RDPGTAPKIGDRVPYVII-------SAAKNTPAYAKAEDPIYVLENSIPIDSTYYLENQL 969

Query: 1262 HPVVSRLCASIEG 1274
               + R+   I G
Sbjct: 970  SQPLLRIFEPILG 982


>gi|324120766|dbj|BAJ78774.1| DNA polymerase delta catalytic subunit [Panorpa takenouchii]
          Length = 1093

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 190/742 (25%), Positives = 331/742 (44%), Gaps = 113/742 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V   E  E  +L +    + +LD D+  G+NI+ FD   LL+RA   +V +  +  
Sbjct: 352  VGSQVFSYEK-ENKMLEKWADFVRQLDPDIFTGYNINNFDFPYLLNRANHLKVKN--FEY 408

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLT 743
            +GR+K  +S + +L       G   +  +     GR+  D  L    LLR+    SY+L 
Sbjct: 409  LGRIKDIKSVVKELVIQSKQMGRRENKSVN--FEGRVPFDLLLV---LLRDYKLRSYTLN 463

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++   L + +++V  H ++   Q  + ++   L  Y   DA+L + L+  L  +    +
Sbjct: 464  AVSYHFLQEQKEDVH-HSIITDLQNESDQTRRRLAVYCLKDAYLPLRLLNKLMCIVNYME 522

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L   +  +V   LL   +   Y++P               +  G +++
Sbjct: 523  MARVTGVPLSCLLTRGQQIKVVSQLLRKSKEAGYLMP-------------VHTGQGSDEQ 569

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                         Y G  V+EPK+G Y   I  LDF SLYPSI+
Sbjct: 570  -----------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIM 600

Query: 922  QEYNICFTTV----ERSPDGL----VPHLPS-------SKTTGVLPELLKNLVQRRRMVK 966
              +NIC+TT+     R   GL    +   PS       S   G+LPE+L++L+  R+  K
Sbjct: 601  MAHNICYTTLLAPSNRDKLGLTDDQITKTPSNNFFVKGSVRRGLLPEILESLLTARKRAK 660

Query: 967  TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
              +K      K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T
Sbjct: 661  NELKVEKDPFKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEHT 720

Query: 1026 VDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
               V+     +        VIYGDTDS+M++ G+  + ++  +  +  + V+ K+ K ++
Sbjct: 721  KQEVEQRYTKQNGYESDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEYVSAKFVKPIK 780

Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            ++ + +Y   LL+ KK+YA   + F +   Y+ I+ KG++ VRRD   L   + + CL +
Sbjct: 781  LEFEKVYFPYLLINKKRYAG--LYFTNAEKYDKIDCKGIETVRRDNCPLVANMMNTCLQK 838

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L +R     VE       ++  D+   ++ + + VITK L+K          Q HV++A
Sbjct: 839  LLIDRDPNGAVEYAK----QIISDLLCNRIDISQLVITKELSKTDY----TAKQAHVELA 890

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             ++K+    T    GD VPY++     T+S  +    ++A  P  +   +    ID  YY
Sbjct: 891  NKMKKRDPGTAPKLGDRVPYVL-----TASTKNAKAYEKAEDP--IYVLENNIPIDSKYY 943

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEER 1316
               Q+   + R+   I G   E+ A+ + L+     +K    +++   S+L       E 
Sbjct: 944  LDNQLSKPLLRIFEPILG---EKKAESILLNGEHTLTK---AVATSRVSALSAFTKKREA 997

Query: 1317 YRGCEPLILS-------CPSCS 1331
              GC+ L+         CP CS
Sbjct: 998  CLGCKALLPPGFEQGALCPHCS 1019


>gi|326428620|gb|EGD74190.1| polymerase [Salpingoeca sp. ATCC 50818]
          Length = 1139

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 212/877 (24%), Positives = 386/877 (44%), Gaps = 167/877 (19%)

Query: 464  INYPFKDPPLPADLKGENFCSLLGT-----HSSALEL---FLVKRKVKGPSWLSIS---- 511
            + + F +P   A  +G    S LGT     + S LEL   F+V+ ++ G +W+ +     
Sbjct: 241  VQHKFINPARRALEQGTITLSKLGTLSYEVYESNLELNLRFMVETQLVGCNWVEVPAGKY 300

Query: 512  ---KFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE-----VPPVTVTAINL---- 559
                FSS P P  VS  +YE+      D+   +   H AE     + P+ + + ++    
Sbjct: 301  KFRSFSSTPKP--VSLAQYEL------DVAFDAFISHPAEDEWQQIAPLRILSFDIECAG 352

Query: 560  -KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
             K VF +      I  A++V                 KP + + FT+     G   P+  
Sbjct: 353  RKGVFPEPDKDPVIQIANMVQVEGES-----------KPFVRNVFTL-----GTCAPI-- 394

Query: 619  NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
                       GS V+ C++ E  LL      + + D D++ G+NI+ FDL  L++RA+ 
Sbjct: 395  ----------VGSKVIACKT-EIELLESWSAFVRECDPDIVTGYNITNFDLPFLMNRAK- 442

Query: 679  CRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLR 736
              + +  +  +GRL+  +S++ + +     +G+  S   ++ + GR+  D     +   +
Sbjct: 443  -HLGARKFPYLGRLRNVQSKLSETKFSSKAYGTRESK--VTSMEGRVPLDVLQILQRDYK 499

Query: 737  EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLS 794
              SY+L  ++   L++ +++V  H ++   Q    E+   L  Y   DA+L + L+  L 
Sbjct: 500  LRSYTLNSVSAHFLSEQKEDVH-HSIITDLQNGNDETRRRLAVYCMKDAYLPLRLLSKLM 558

Query: 795  VLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
             +    ++  ++G      L +G + + +  L+ HA +    ++P               
Sbjct: 559  CVVNYMEMARVTGVPLSYLLSRGQQIKVISQLMRHAGQ-HDLVIP--------------- 602

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                     V E    D                    Y G  V++PK+G YD  I  LDF
Sbjct: 603  ---------VHERQGSDEQ------------------YEGATVIQPKRGYYDTPIATLDF 635

Query: 914  NSLYPSIIQEYNICFTTV----ERS---PDGLVPHLPSSKTTGVLPELLKNLVQ------ 960
            +SLYPSI+  +N+C+TT+    ERS   PD  +   P+          +KN V+      
Sbjct: 636  SSLYPSIMMAHNLCYTTLLSPQERSHLHPDDYI-KTPNGDY------FVKNKVRKGLLPL 688

Query: 961  --------RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
                    R+R      K     +   L+ +Q ALK++ANS+YG  G +  +     ++ 
Sbjct: 689  ILESLLSARKRAKADLKKETDPFRKSVLNGRQLALKISANSVYGFTGATVGKLPCLAISS 748

Query: 1013 LITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
             +T  GRE++ +T   V++  N++        VIYGDTDS+M+  G+D + +   +A + 
Sbjct: 749  SVTAFGREMIEATKQHVESRYNVKNGYKHDAVVIYGDTDSVMVKFGLDSLEETMKVAQEA 808

Query: 1065 IQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
             + V  K+ + + ++ + +Y   LL+ KK+YA +   +     ++ ++ KGL  VRRD  
Sbjct: 809  AEYVTSKFIRPINLEFEKVYFPYLLINKKRYAGLF--WTRTEKWDKMDCKGLVTVRRDNC 866

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L   + + CL ++L ER+ E  ++    ++     D+   ++ + + VITK LTK  + 
Sbjct: 867  PLVVTLINTCLHKLLIERNVEGAIDFAKKTI----SDLLCNEIDISQLVITKALTKTADE 922

Query: 1184 YPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            Y D K Q HV++A R+++    +  + GD V Y+I   +G       G     +  D + 
Sbjct: 923  Y-DGK-QAHVELAERMRKRDAGSAPTLGDRVAYVII--RGPK-----GAPAFEKSEDPIY 973

Query: 1244 KGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
              +    +D  YY   Q+   +  +   I G+  + L
Sbjct: 974  VLENNIQLDTQYYLHNQLEKPLMSIFEPILGSRAKEL 1010


>gi|260826580|ref|XP_002608243.1| hypothetical protein BRAFLDRAFT_125058 [Branchiostoma floridae]
 gi|229293594|gb|EEN64253.1| hypothetical protein BRAFLDRAFT_125058 [Branchiostoma floridae]
          Length = 1286

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 185/679 (27%), Positives = 314/679 (46%), Gaps = 99/679 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +  E  +L      + ++D D++ G+NI  FDL  L+ RA   +V  + +  +
Sbjct: 547  GSKVLSFKK-EADMLAEWSSFIREVDPDLVTGYNIQNFDLPYLIKRAATLKV--TKFPFL 603

Query: 690  GRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
            GR+K  +M  + K + I     G        + GR+   TF   + LLR+    SY+L  
Sbjct: 604  GRMK--DMRSVIKDQNIQSKQMGKRENKYVNMEGRV---TFDLLQVLLRDYKLRSYTLNA 658

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H ++   Q  + ++   L  Y   DA L + L+  L  +    ++
Sbjct: 659  VSYHFLQQQKEDVH-HSIITDLQNGSEQTRRRLAVYCLKDALLPLRLLDKLMSVINYMEM 717

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   LL   R +  ++P           A Q S   V D  
Sbjct: 718  ARVTGVPLTYLLTRGQQIKVMSQLLRKAREQDLVIP-----------AMQSS---VSDEQ 763

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                        Y G  V+EP KG YD  I  LDF+SLYPSI+ 
Sbjct: 764  ----------------------------YEGATVIEPAKGYYDTPIATLDFSSLYPSIMM 795

Query: 923  EYNICFTTV--------ERSPDGLVPHLPSS-----KT--TGVLPELLKNLVQRRRMVKT 967
             +N+C+TT+          SPD  +   PS      KT   G+LPE+L+NL+  R+  K 
Sbjct: 796  AHNLCYTTLLSTPSSRASLSPDQFI-KTPSGNFFVKKTLRKGLLPEILENLLSARKKAKA 854

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   +   LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++  T 
Sbjct: 855  DLKKETDPFRKSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTSFGRTMIEQTR 914

Query: 1027 DLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+    +        +VIYGDTDS+M+  G++ +A+A  +  +  Q V+ K+   +++
Sbjct: 915  QFVEETYRIALGHKHDAKVIYGDTDSVMVKFGVETVAEAMELGKEAAQAVSAKFPHPVKL 974

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + F     ++ ++ KG++ VRRD   L   + + CL ++
Sbjct: 975  EFEKVYFPYLLINKKRYAG--LYFTRPEIHDKMDCKGIETVRRDNCPLVAHLINTCLQKL 1032

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L  R  +  ++       +V  D+   +V + + VITK LTK  + Y  A  Q HV++A 
Sbjct: 1033 LIYRDPQGAIDHAK----QVISDLLCNRVDISQLVITKELTKEGDEY--AAKQAHVELAE 1086

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD VPY+I         ++ G A   +  D +   +    ID  YY 
Sbjct: 1087 RMRKRDAGSAPNLGDRVPYVII-------AAAKGTAAYMKSEDPIYVLENNIPIDTKYYL 1139

Query: 1258 SQQIHPVVSRLCASIEGTS 1276
             QQ+   + R+   I G S
Sbjct: 1140 DQQLSKPLLRIFEPILGES 1158



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            +V  D+   +V + + VITK LTK  + Y  A  Q HV++A R+++    +  + GD VP
Sbjct: 387  QVISDLLCNRVDISQLVITKELTKEGDEY--AAKQAHVELAERMRKRDAGSAPNLGDRVP 444

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT 1275
            Y+I         ++ G A   +  D +   +    ID  YY  QQ+   + R+   I G 
Sbjct: 445  YVII-------AAAKGTAAYMKSEDPIYVLENNIPIDTKYYLDQQLSKPLLRIFEPILGE 497

Query: 1276 S 1276
            S
Sbjct: 498  S 498


>gi|402550496|pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550499|pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550502|pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550505|pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550510|pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550513|pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550514|pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550519|pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
 gi|402550520|pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna,
            In Edition Mode
          Length = 793

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 177/650 (27%), Positives = 294/650 (45%), Gaps = 101/650 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            SSER ++ RL+  + + D DV++ +N   F    LL RA+   +      K+   + +  
Sbjct: 207  SSEREMIKRLVKVIREKDPDVIITYNGDNFAFPYLLKRAEKLGI------KLPLGRDNSE 260

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++       G S  +   I GR+  D F   R  +   +Y+L  + +    K +++V
Sbjct: 261  PKMQR------MGDSLAVE--IKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 312

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              H++ + ++T + L  + +Y   DA ++ EL       P+  QL  + G       + +
Sbjct: 313  YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWDVSRSS 370

Query: 818  RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
                VE+ LL     +  + P+K                                     
Sbjct: 371  TGNLVEWFLLRKAYERNELAPNK------------------------------------- 393

Query: 878  SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
                  + +   +Y GG V EP+KGL++  I+ LDF SLYPSII  +N+   T+ R    
Sbjct: 394  PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 452

Query: 934  ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                +P   V H       G +P LL NL++ R+ +K  MK +   ++ + LD +Q+A+K
Sbjct: 453  EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 510

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
            + ANS YG  G++ +R+Y K  AE +T  GR+     +DLV+  L     +V+Y DTD +
Sbjct: 511  ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESRGFKVLYIDTDGL 566

Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
               I     +  K KA+  K ++ +N K    LE++ +G Y R   + KKKYA +  + K
Sbjct: 567  YATIPGAKHEEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 624

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
                   I  +GL++VRRDWS ++KE     L  IL   + ++ V+ +     +V E + 
Sbjct: 625  -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 673

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++  EK VI + +T+P   Y      PHV VA RL   G       G  + YI+    
Sbjct: 674  KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 729

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            G  S  ++ I       +E      K+  D +YY   Q+ P V R+  + 
Sbjct: 730  GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 770


>gi|365983526|ref|XP_003668596.1| hypothetical protein NDAI_0B03180 [Naumovozyma dairenensis CBS 421]
 gi|343767363|emb|CCD23353.1| hypothetical protein NDAI_0B03180 [Naumovozyma dairenensis CBS 421]
          Length = 1107

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 203/810 (25%), Positives = 359/810 (44%), Gaps = 147/810 (18%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K++  P   ++S C+ E+ ++  KD+    +    + + P+ 
Sbjct: 268  LMVDCGIVGMSWITLPKGKYTMIPDASKLSTCQLEVCINY-KDLVAHPAENDWSHMAPLR 326

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 327  ILSFDIECAGRVGVFPEPEVDPVIQIANVVSVTGAK-----------KPFIRNVFTL--- 372

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                  P+             GS V     +E  +L+     + + D D+++G+N + FD
Sbjct: 373  --NSCSPI------------TGSQVFS-HDTEEEMLSHWRQFILEADPDLIIGYNTTNFD 417

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            L  L++RA+  +V    +   GRLK  + E+         +G+  S  I   I GRL  D
Sbjct: 418  LPYLINRAKALKVQD--FPYFGRLKNVKQEIKDAIFSSKAYGTRESKNIN--IDGRLQLD 473

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                ++   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 474  LLQFAQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIITDLQNGDSETRRRLAVYCLKDAY 532

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR---AKKYIVPDKF 841
            L + L+  L  L    ++  ++G  +   L  AR Q+++ ++   FR       ++P+  
Sbjct: 533  LPLRLLEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK-VVSQLFRKCIQIDTVIPN-- 587

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
                   M+ Q S+                                   Y G  V+EP +
Sbjct: 588  -------MSSQASDE---------------------------------QYEGATVIEPIR 607

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPS 944
            G YD  I  LDFNSLYPSI+  +N+C+T      TVER           SP+G   +  +
Sbjct: 608  GYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLKKDEEYIISPNG--DYFVT 665

Query: 945  SKT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
             K   G+LP +L  L+Q R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G + 
Sbjct: 666  DKVRRGILPIILDELIQARKRAKKDLKNETDPFKRDVLNGRQLALKISANSVYGFTGATV 725

Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDI 1054
             +     ++  +T  GR+++ +T + V+              V+YGDTDS+M+  G  D+
Sbjct: 726  GKLPCLAISSSVTAFGRDMIMTTKNAVEEKYTKNKGYADDAIVVYGDTDSVMVKFGTTDL 785

Query: 1055 AKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERK 1113
             +A  +  +    V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++K
Sbjct: 786  KEAMRLGTEAAAFVSTLFKHPINLEFEKCYFPYLLINKKRYAGLYWTNPD--KFDRLDQK 843

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GL  VRRD   L   V +  L +IL ER+    ++ +  ++     D+    V + K +I
Sbjct: 844  GLASVRRDSCSLVSIVMNKVLKKILIERNVPSALDFVKATI----NDILHNNVDISKLII 899

Query: 1174 TKTLTKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            +KTL       P+  N QPH  +A RLK+     G + GD V Y+I       +G +  +
Sbjct: 900  SKTLA------PNYTNPQPHAVLAARLKKRD-GMGPNVGDRVDYVI-------TGGNDKL 945

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIH 1262
              RA  P  L   +    ID  YY + Q+ 
Sbjct: 946  YNRAEDP--LYVLEHNLQIDSKYYLNNQLQ 973


>gi|119175148|ref|XP_001239851.1| hypothetical protein CIMG_09472 [Coccidioides immitis RS]
 gi|392870043|gb|EAS28595.2| DNA polymerase (pol2) [Coccidioides immitis RS]
          Length = 1110

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 204/822 (24%), Positives = 359/822 (43%), Gaps = 143/822 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  SK+   P  QR S C+ E  V   +D+         A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPPSKYRIVPEHQRYSNCQIEAVVHY-RDLIAHPHDGEWAKMAPLR 313

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F +  +   I  A+VV  +              KP + + F     
Sbjct: 314  ILSFDIECAGRKGIFPEAHEDPVIQIANVVTRYGES-----------KPFVRNVFV---- 358

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            L+G    +  N +  D              +E+ +L      L K+D DV++G+NI+ FD
Sbjct: 359  LNGC--SLIVNTQILDF------------KTEQEMLMAWREFLEKVDPDVIIGYNIANFD 404

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
               LL RA+         WS++  +        +   T F S   G      +   GR+ 
Sbjct: 405  FPYLLDRARHLNCDDFPYWSRLKNVVS------QSKDTNFSSKQMGNRDTKATNTNGRIQ 458

Query: 725  CDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
             D   L  RD  LR  +Y+L  +    L + +++V    + +++  T +S   L  Y   
Sbjct: 459  LDLLQLIQRDHQLR--NYTLNSVCSHFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLK 516

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPD 839
            DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++  L      +  ++P+
Sbjct: 517  DAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFISQLFRKALEQDLVIPN 574

Query: 840  KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
                              +++ N EE                         Y G  V+EP
Sbjct: 575  ------------------LKNENGEE------------------------QYKGATVIEP 592

Query: 900  KKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHL 942
             K  YD  I  LDF SLYPSIIQ +N+C+TT      VE+           +P+G +   
Sbjct: 593  VKDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKTSVEKLNLKKDEDYIVTPNGDM-FC 651

Query: 943  PSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFS 1001
             S    G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G S
Sbjct: 652  TSKVRKGLLSQILQELLSARKRAKKELAVETDPFKKAVLNGRQLALKISANSVYGITGAS 711

Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDD 1053
            N +     +A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G+ D
Sbjct: 712  NGKLPCLAIASSTTSYGRQMIMKTKDEVEARFTMANGYPYDAKVIYGDTDSVMVKFGVKD 771

Query: 1054 IAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER 1112
            IA+A  +  +    V+ K+ + ++++ + +Y   LL+ KK+YA +   + +   ++ ++ 
Sbjct: 772  IAEAMKLGQEAADFVSAKFLEPIKLEFEKVYFPYLLINKKRYAGLF--WTNPNKFDKMDS 829

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
            KG++ VRRD   L + V +  L +IL +R        + +++     D+   +V + K V
Sbjct: 830  KGIETVRRDNCRLVQTVIETVLKKILIDRDVNGAESYVKDTIA----DLLQNKVDMSKLV 885

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            ITK L+K       +  Q HV++A R+++    +  + GD V Y+I          + G 
Sbjct: 886  ITKALSKSDY----SAKQAHVELAERMRKRDVGSAPTLGDRVAYVIV-------KGATGS 934

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                +  D +   +    ID  YY   Q+   ++R+   I G
Sbjct: 935  KNYEKSEDPIYVLENNIPIDTKYYLDNQLAKPLARIFDPILG 976


>gi|340502511|gb|EGR29193.1| hypothetical protein IMG5_161090 [Ichthyophthirius multifiliis]
          Length = 1092

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 172/681 (25%), Positives = 301/681 (44%), Gaps = 109/681 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LL    I +  +D D+ +G+NI  FD   +  RA+   V    +  +GR+K + + K
Sbjct: 342  EEDLLKEWEIFMQFVDPDIYLGYNIINFDFPYIFDRAKKLNVNKGKFGYMGRIKTT-ISK 400

Query: 700  LRKGRTIFGSGASPGIMSC----IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
            ++ G+  F S A  G+         GR+  D F+  +   +  SYSL  ++   LN+ ++
Sbjct: 401  IKDGK--FQSKAM-GLRETKEINFEGRIQLDMFIHMQKEQKLSSYSLNTVSYHFLNEQKE 457

Query: 756  EVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
            +V  H  + + Q    E+   L  Y   D+ L ++LM  L  +    ++  ++G      
Sbjct: 458  DVH-HTQISVLQEGNSETRKRLAIYCLKDSQLPLKLMQKLMCIYNYTEMARVTGVPINYL 516

Query: 814  LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
                +  +V   L    +  K  +P +                                 
Sbjct: 517  FVRGQQIKVASQLYRKAKLCKMFIPTE--------------------------------- 543

Query: 874  DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-- 931
                     R   +G  + G  VLEPK+G Y K I  LDF SLYPSI+  +N+C++T+  
Sbjct: 544  ---------RSKGQGDKFEGAFVLEPKRGFYSKPIATLDFASLYPSIMMAHNLCYSTLIT 594

Query: 932  ------------ERSPDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
                          +P+G   + PH+      G+LPE+LK L+  R+  K  +   +  L
Sbjct: 595  RDITLKMNKDDYTATPNGDYFVKPHI----RKGILPEILKELLNARKKAKNDLTQETDPL 650

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL-- 1033
            K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T D V  +   
Sbjct: 651  KKAVLDGRQLALKISANSVYGFTGAQLGQLPCLQISSSVTSFGRNMIEGTRDFVLEHFSK 710

Query: 1034 ------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC--LEIDLDGLYKR 1085
                  + +VIYGDTDS+M+  G+  I +A  +  +    + KK     ++++ + +Y  
Sbjct: 711  KNGYEYDSDVIYGDTDSVMVQFGVPTIQEAMNLGKEAASLITKKLFINPIKLEFEKVYCP 770

Query: 1086 MLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED 1145
             LL+ KK+YA   + F     Y+ I+ KG++ VRRD   + +++ + CL  +L E +   
Sbjct: 771  YLLINKKRYAG--LYFTKPDKYDKIDTKGMENVRRDNCQMIRDIMNNCLKYVLVEFNNNG 828

Query: 1146 VVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK--------------NQP 1191
            V ++I   +  +  D+   ++ + K VITK+LTK  +   D                 Q 
Sbjct: 829  VEKAIE-YIKGMVSDLYQNKIDISKLVITKSLTKKAQEGDDEDDENEKKTNKDQYKSKQA 887

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI 1251
            HV++A ++      +  S GD +P++I    G+ +  +    ++   P  +   D    +
Sbjct: 888  HVELAKKMALRDAGSAPSIGDRIPFVIIA--GSKNAKNY---EKVEDPIYVVNHD--IPL 940

Query: 1252 DIDYYASQQIHPVVSRLCASI 1272
            D DYY  +QI   + R+   I
Sbjct: 941  DYDYYIEKQIKKPLIRIFEHI 961


>gi|74507171|sp|Q7SIG7.1|DPOL_DESST RecName: Full=DNA polymerase; AltName: Full=D Tok Pol
 gi|6435708|pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok
          Length = 773

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 170/653 (26%), Positives = 287/653 (43%), Gaps = 107/653 (16%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R+++  V                
Sbjct: 185  STEKEMIKRFLKVIQEKDPDVLITYNGDNFDFAYLKKRSEMLGV---------------- 228

Query: 698  PKLRKGRTIFGSGASPGIMSC-------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
             K   GR     G+ P I          + GR+  D +   R  +   +Y+L  + +   
Sbjct: 229  -KFILGR----DGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLETVYEPVF 283

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NL 809
             + +++V   ++ + +++ E L  +  Y   DA  + EL       P+  QL+ + G +L
Sbjct: 284  GQPKEKVYAEEIARAWESGEGLERVARYSMEDAKATYEL--GKEFFPMEAQLSRLVGQSL 341

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
            W  + + +    VE+ LL     +  + P+K                             
Sbjct: 342  WDVS-RSSTGNLVEWFLLRKAYERNDVAPNK----------------------------- 371

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                      ++    +R  +YAGG V EP+KGL++  I+ LD+ SLYPSII  +N+   
Sbjct: 372  ---------PDERELARRTESYAGGYVKEPEKGLWEN-IVYLDYKSLYPSIIITHNVSPD 421

Query: 930  TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
            T+ R        +P   V H       G +P LL +L++ R+ VK  MK T   ++ + L
Sbjct: 422  TLNREGCREYDVAPQ--VGHRFCKDFPGFIPSLLGDLLEERQKVKKKMKATVDPIERKLL 479

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+A+K+ ANS YG   ++N+R+Y +  AE +T  GR+ + +T+  ++     +V+Y 
Sbjct: 480  DYRQRAIKILANSYYGYYAYANARWYCRECAESVTAWGRQYIETTMREIEEKFGFKVLYA 539

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTD         D    K  A + +  +N +    LE++ +G Y+R   + KKKYA +  
Sbjct: 540  DTDGFFATIPGADAETVKNKAKEFLNYINPRLPGLLELEYEGFYRRGFFVTKKKYAVIDE 599

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
            + K       I  +GL++VRRDWS ++KE     L  IL     E+ V  +     +V E
Sbjct: 600  EDK-------ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTE 648

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             +   +V  EK VI + +T+   +Y      PHV VA RL   G       G  + YI+ 
Sbjct: 649  KLSRHEVPPEKLVIYEQITRDLRSY--RATGPHVAVAKRLAARG--IKIRPGTVISYIVL 704

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
               G        +  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 705  KGPGR-------VGDRAIPFDEFDPAKHRY--DAEYYIENQVLPAVERILRAF 748


>gi|2581874|gb|AAC47764.1| DNA polymerase alpha [Leishmania aethiopica]
 gi|2581878|gb|AAC47766.1| DNA polymerase alpha [Leishmania arabica]
 gi|2581908|gb|AAC47781.1| DNA polymerase alpha [Leishmania tropica]
          Length = 307

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 177/339 (52%), Gaps = 68/339 (20%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ +L V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSNLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K        
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRG------ 174

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRK-GKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                 H+D  + GKR   Y GG+VL+PK GLY  YILLLDFNS
Sbjct: 175 ----------------------HDDEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNS 212

Query: 916 LYPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKN 957
           LYPS++QE+NICFTTV+R          P+ L+    S    G         VLP+++K+
Sbjct: 213 LYPSLMQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKS 270

Query: 958 LVQRRRMVKTWMKT---ASGLKIQQLDIQQQALKLTANS 993
           LV  RR VK  MKT   A+ L +  L+I+Q+ALKLTANS
Sbjct: 271 LVDSRREVKRLMKTEKDANNLAL--LEIRQKALKLTANS 307


>gi|324120704|dbj|BAJ78743.1| DNA polymerase delta catalytic subunit [Phraortes illepidus]
          Length = 1093

 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 185/728 (25%), Positives = 320/728 (43%), Gaps = 108/728 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+   +SE  +L      + ++D D++ G+NI+ FD+  L++RA+  +V +  ++ 
Sbjct: 357  VGSQVISF-NSENEMLKTWADFVREVDPDIITGYNINNFDIPYLINRAKHLKVKN--FTY 413

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR+K  +     +       G          GR+  D +L      +  SY+L  ++  
Sbjct: 414  LGRIKNIQSVIKDQVLQSKQMGRRENKHVNFEGRVPFDLYLVLVRDYKLRSYTLNAVSYH 473

Query: 749  QLNKDRKEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q   S     L  Y   DA+L + L+  L  +    +++ ++
Sbjct: 474  FLQEQKEDVH-HSIITDLQNGNSQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMSRVT 532

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G      L   +  +V   LL   R K Y++P   + V+E +                  
Sbjct: 533  GVSLACLLTRGQQIKVVSQLLRKAREKGYLMPVYASGVQEEQ------------------ 574

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                    + G  V+EP+KG Y   I  LDF+SLYPSI+  +N+
Sbjct: 575  ------------------------FEGATVIEPRKGYYSDPITTLDFSSLYPSIMMAHNL 610

Query: 927  CFTTVERSPD---GLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA 972
            C+TT+   P     L P            + SS   G+LPE+L++L+  R+  K  +K  
Sbjct: 611  CYTTLVNGPPDKLSLTPDQYIKTPASCTFVKSSVRKGLLPEILESLLSARKKAKVDLKNE 670

Query: 973  SG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
            +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ 
Sbjct: 671  TDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQ 730

Query: 1032 NL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGL 1082
                      +  VIYGDTDS+M+  G+  + +A  +  +    V  K+ + ++++ + +
Sbjct: 731  RYCIANGYKHDASVIYGDTDSVMVKFGVTTLEEAMELGREAADYVTSKFVRPIQLEFEKV 790

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   + + CL ++L ER 
Sbjct: 791  YFPYLLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNCPLVANMMNTCLQKLLIERD 848

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQS 1202
             +  V        +V  D+   +V + K VITK LTK    Y  A  Q HV++A ++K+ 
Sbjct: 849  PDGAVTYTK----EVISDLLCNRVDISKLVITKELTK--NDY--AAKQAHVELANKMKKR 900

Query: 1203 GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYY 1256
                    GD VPY+I             I      P  +K  D  ++      ID  YY
Sbjct: 901  DPGNAPKLGDRVPYVI-------------IKAAKNTPAYMKAEDPIYVLENSIPIDSTYY 947

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEER 1316
               Q+   + R+   I G      AD + L     ++K   T S   + +L   +  +E 
Sbjct: 948  LENQLSKPLLRIFTPILGEK----ADSILLKGDHTRTKSVLTSS---TGALAAFIRKKET 1000

Query: 1317 YRGCEPLI 1324
              GC+ ++
Sbjct: 1001 CLGCKAVV 1008


>gi|169615194|ref|XP_001801013.1| hypothetical protein SNOG_10753 [Phaeosphaeria nodorum SN15]
 gi|160702905|gb|EAT82147.2| hypothetical protein SNOG_10753 [Phaeosphaeria nodorum SN15]
          Length = 1115

 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 182/677 (26%), Positives = 306/677 (45%), Gaps = 106/677 (15%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSE 696
            S+E  +L +    L ++D DV++G+N S FD   LL RA+  ++P    WS++    +S 
Sbjct: 371  SNEGEMLMKWRDFLEEVDPDVIIGYNTSNFDFPYLLDRAKHLKLPKFPYWSRL----KSV 426

Query: 697  MPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
              K++     F S   G      +   GRL  D     +   +  SY+L  +    L + 
Sbjct: 427  QTKVQTSN--FSSKQLGNRDTKTANTNGRLQLDLLQLIQRDHQLRSYTLNSVCAHFLKEQ 484

Query: 754  RKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            +++V    + +++     S   L  Y   DA+L   L+  L  L    ++  ++G  +  
Sbjct: 485  KEDVHHSMITELYNGDSNSRRRLAVYCLKDAYLPQRLLDKLMCLVNYTEMARVTGVPFNY 544

Query: 813  TLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
             L  AR Q++ ++  L       + IVPD                          L N+ 
Sbjct: 545  IL--ARGQQIRFVSQLFRKALDHQLIVPD--------------------------LPNQ- 575

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT- 929
                          G  G  Y G  V+EPK+G Y + +  LDF SLYPSI+Q +N+C+T 
Sbjct: 576  --------------GDNGDQYEGATVIEPKRGYYKQPVATLDFASLYPSIMQAHNLCYTT 621

Query: 930  -----TVER-----------SPDGLVPHLPSSKT-TGVLPELLKNLV-QRRRMVKTWMKT 971
                 TVE+           +P+G +    ++KT  G+L ++L+ L+  R+R  K     
Sbjct: 622  WLDRQTVEKLKMKKDEDYIVTPNGDM--FCTAKTRKGLLSQILEELLGARKRAKKELAVE 679

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
                K   L+ +Q ALK+TANS+YG  G +N +     +A   T  GR+++  T   V+ 
Sbjct: 680  TDPFKKAVLNGRQLALKVTANSVYGLTGATNGKLPCLAIASSTTSIGRQMIEKTKAEVEA 739

Query: 1032 NLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGL 1082
              N+        EVIYGDTDS+M+  G  ++A+A  +  +  Q V+ K+ K ++++ + +
Sbjct: 740  KYNIANGYSHDAEVIYGDTDSVMVKFGTSELAEAMKLGEEAAQYVSSKFVKPIKLEFEKV 799

Query: 1083 YKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS 1142
            Y   LL+ KK+YA   + + + + ++ ++ KG++ VRRD   L   V D  L  +L ++ 
Sbjct: 800  YFPYLLINKKRYAG--LYWTNPVKWDKMDTKGIETVRRDNCRLVVNVIDTSLRMLLIDQD 857

Query: 1143 CEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE-----AYPDAKNQPHVQVAL 1197
             E   E +  ++     D+   ++ L   VITK LTK         Y  A  Q HV++A 
Sbjct: 858  PEGAQEFVKETIA----DLLQNKIDLSNLVITKALTKQENKDGTGGY--ANKQAHVELAE 911

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+K+    +  + GD V Y++         S+ G     +  D L   +    ID  YY 
Sbjct: 912  RMKKRDAGSAPALGDRVAYVMI-------KSASGARNFEKSEDPLYVLENNIPIDTKYYL 964

Query: 1258 SQQIHPVVSRLCASIEG 1274
              Q+   + R+   I G
Sbjct: 965  DNQLAKPLGRIFEPILG 981


>gi|169775879|ref|XP_001822406.1| DNA polymerase delta catalytic subunit [Aspergillus oryzae RIB40]
 gi|238502533|ref|XP_002382500.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
            flavus NRRL3357]
 gi|83771141|dbj|BAE61273.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220691310|gb|EED47658.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
            flavus NRRL3357]
 gi|391871049|gb|EIT80215.1| DNA polymerase delta, catalytic subunit [Aspergillus oryzae 3.042]
          Length = 1104

 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 179/682 (26%), Positives = 312/682 (45%), Gaps = 112/682 (16%)

Query: 631  SNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSK 688
            + +L  E  E+ L+  R  ++  K+D DV++G+NI+ FD   LL RA+  +      W++
Sbjct: 363  TQILEFEKEEKMLMAWRDFVQ--KVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTR 420

Query: 689  I-GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSL 742
            + G + +++        T F S   G      +   GR+  D   L  RD  LR  SY+L
Sbjct: 421  LNGVMSQAK-------ETNFSSKQMGNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTL 471

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
              ++   L + +++V    + ++   T +S   L  Y   DA+L   LM  L  L    +
Sbjct: 472  NSVSYEFLGEQKEDVHHTMITELHNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLINYTE 531

Query: 802  LTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
            +  ++G  +   L  +R Q+V+++  L      ++ ++P                     
Sbjct: 532  MARVTGVPFNFLL--SRGQQVKFMSQLFRKALEQQLVIP--------------------- 568

Query: 860  DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
                           N+T  ++         Y G  V+EP +G Y+  I  LDF SLYPS
Sbjct: 569  ---------------NNTPESEQE-------YEGATVIEPVRGYYNVPIATLDFASLYPS 606

Query: 920  IIQEYNICFTT------VER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRR 962
            IIQ +N+C+TT      VER           +P+G +    +    G+L ++L+ L+  R
Sbjct: 607  IIQAHNLCYTTLLNKKAVERYNLKKDEDYIVTPNGDL-FCTTKVRKGLLSQILEELLAAR 665

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +    P+A   T  GR++
Sbjct: 666  KRAKKELAVETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQM 725

Query: 1022 LRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY- 1072
            +  T   V+    +        +VIYGDTDS+M+  G+ ++A A  +  +  + V+ K+ 
Sbjct: 726  IEKTKQEVEARYTIANGYSHDAKVIYGDTDSVMVKFGVTELADAMKLGQEASEYVSSKFL 785

Query: 1073 KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
            K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  LL + V + 
Sbjct: 786  KPIKLEFEKVYFPYLLINKKRYAG--LYWTKTEKYDKMDTKGIETVRRDNCLLVQNVIET 843

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
             L +IL +R  +   E +  ++     D+   +V + K VITK L+K       A  Q H
Sbjct: 844  VLHKILIDRDVDSAQEYVKETI----SDLLQNKVDMSKLVITKALSKSDY----AAKQAH 895

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
            V++A R+K+    +  + GD V Y+I    G S           +  D +   +    ID
Sbjct: 896  VELAERMKKRDAGSAPTLGDRVAYVIVKGAGGSKNYE-------KSEDPIYVLENNIPID 948

Query: 1253 IDYYASQQIHPVVSRLCASIEG 1274
              YY   Q+   + R+   I G
Sbjct: 949  TKYYLDNQLANPLGRIFEPILG 970


>gi|350645608|emb|CCD59733.1| DNA polymerase delta catalytic subunit,putative [Schistosoma mansoni]
          Length = 1177

 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 178/689 (25%), Positives = 308/689 (44%), Gaps = 107/689 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+    +E+ LL +    + ++D D++ G+NI  FDL  L++RA   +V    +  
Sbjct: 421  VGSQVIS-HQTEKELLAKWSAFVREVDPDIITGYNIQNFDLPYLINRANTLKVDG--FEF 477

Query: 689  IGRLKRSEMPKLRKGRTIFGS-GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQL 745
            +GR+ R     +R+  T     G        I GR+  D   +  RD  LR  SY+L  +
Sbjct: 478  LGRI-RGARSTIREAMTQSKQMGRRENKFVNIDGRVQFDLLQILFRDYKLR--SYTLNAV 534

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H+V+   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 535  SYHFLEEQKEDVH-HNVITDLQNGDAQTRRRLAVYCLKDAYLPLRLLDKLMCIVNNIEMA 593

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL       Y++P   TY                    
Sbjct: 594  RVTGVPLTYLLTRGQQVKVVSQLLRKAHEHGYLLP---TY-------------------- 630

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                + ++G  + G  VLEP+KG Y++ I  LDF SLYPSI+  
Sbjct: 631  --------------------QSQQGDEFVGATVLEPRKGFYNEPIATLDFASLYPSIMMA 670

Query: 924  YNICFTT---VERSPDG--------LVPH-----------------LPSSKTTGVLPELL 955
            +N+C+TT   V  +P G        LV                   + S    G+LPE+L
Sbjct: 671  HNLCYTTLLQVNTTPHGSTGGGIQALVQRYNLTDEDYIKTPTGAYFVKSHICHGILPEIL 730

Query: 956  KNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            + L+  R+  K  + K    L+ + LD +Q ALK++ANS+YG  G    +     ++  +
Sbjct: 731  QQLLSARKKAKAELAKETDPLRKRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISASV 790

Query: 1015 TQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ 1066
            T  GR ++  T   V+    +         VIYGDTDS+M   G+  + +A  +  +  +
Sbjct: 791  TSFGRLMIEQTKLHVEKKFTIANGYKHDAVVIYGDTDSVMCKFGVSTVTEAMELGRQAAE 850

Query: 1067 EVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
             +++++ K + ++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD S L
Sbjct: 851  IISEEFPKPIRLEFEKVYCPYLLINKKRYAGLYFTKPDR--HDKMDCKGIETVRRDNSPL 908

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
               + + CL +IL +R     +    +    V  D+   ++ + + VI+K LTK  E Y 
Sbjct: 909  VANLINACLERILIDRDPNAAISYAQS----VISDLLCNRIDISQLVISKELTKTDEEY- 963

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
                Q HV++A ++++    +  + GD VPY+I    G ++      A  A+  D L   
Sbjct: 964  -TGKQAHVELAAKMRKRDPGSAPNLGDRVPYVITAVGGKNT------AAYAKAEDPLYVL 1016

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +    ID  YY   Q+   + R+   I G
Sbjct: 1017 EHNVPIDTKYYLENQLANPLLRIFEPILG 1045


>gi|124027770|ref|YP_001013090.1| DNA polymerase II [Hyperthermus butylicus DSM 5456]
 gi|123978464|gb|ABM80745.1| DNA polymerase III [Hyperthermus butylicus DSM 5456]
          Length = 804

 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 171/653 (26%), Positives = 293/653 (44%), Gaps = 122/653 (18%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
             D D++VG+N +GFD   L+ RA+   V   +  ++G    +         +++G  + P
Sbjct: 240  FDPDIIVGYNSNGFDWPYLMQRARKVGVRLDVTRRVGAEPTT---------SVYGHVSVP 290

Query: 714  GIMSCIAGRLLCDTFLCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
            G       RL  D +  + ++       L EV+  L  + K++    R  +   ++ + +
Sbjct: 291  G-------RLNVDLYHYAEEIHEVKVKTLEEVAEYLGVMKKSE----RVLIHWWEIPRYW 339

Query: 767  QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
            +  E    L +Y   D   +  L   +  LP   QL+ ++G    +        R+E+ L
Sbjct: 340  EDPEKRPILEQYARDDVRATYGLAEKM--LPFAIQLSTVTGIPLDQVGVMGVGFRLEWYL 397

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
            + A      +VP++                   +R+ E                      
Sbjct: 398  IRAAYEMNELVPNRV------------------ERHEE---------------------- 417

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-------- 938
               +Y G +VL+P KG+++  +++LDF+S+YP+I+ +YN+   T+   P           
Sbjct: 418  ---SYRGAVVLKPLKGVHEN-VVVLDFSSMYPNIMIKYNVGPDTIVDDPAECEKYGGCYV 473

Query: 939  ---VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANS 993
               V H    +  G    +L+NL++ R+ V+  MK       + +  D +Q+ALK+ AN+
Sbjct: 474  APEVGHRFRKQPPGFFKTVLENLLRLRKQVREKMKELPPESPEYRLYDERQRALKVLANA 533

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
             YG +G+S +R+Y K  AE +T  GR ++ S ++  +  L L+VIYGDTDS+ +     D
Sbjct: 534  SYGYMGWSGARWYCKRCAEAVTAWGRSLILSAIEYAR-KLGLKVIYGDTDSLFVTY---D 589

Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIER 1112
              K K +   V+  +       EI +D +Y+R+   + KK+Y  +    +DG     I+ 
Sbjct: 590  PEKVKKLIDYVVNVLG-----FEIKIDKIYRRVFFTEAKKRYVGL---LEDGR----IDI 637

Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
             G + VR DW  L+KEV       +L     ++ +  I + + K    +R G++ +EK +
Sbjct: 638  VGFEAVRGDWCELAKEVQSTVAEIVLKTGKIDEAIRYIRDVIKK----LREGEIPVEKLI 693

Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            I KTL+K  E Y      PHV  A R+K++GY    S GD + Y+I    G        I
Sbjct: 694  IWKTLSKRLEEY--EHEAPHVVAARRMKEAGYD--VSPGDKIGYVIVRGAGR-------I 742

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
            + RA     +K  D    ID+DYY   QI P V R+ +    T  +  A   G
Sbjct: 743  SSRAYPYFMVKPSD----IDVDYYIDHQIVPAVLRILSYFGVTEKQLKAASTG 791


>gi|402085670|gb|EJT80568.1| DNA polymerase delta catalytic subunit [Gaeumannomyces graminis var.
            tritici R3-111a-1]
          Length = 1104

 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 196/816 (24%), Positives = 354/816 (43%), Gaps = 131/816 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F+V   ++G SW+    + +S   A Q+ S C+ E  + S +D+         +++ P+ 
Sbjct: 248  FMVDCHIQGMSWVEAPAAAYSLIHASQKQSNCQIEAEI-SYRDLVAHKPVGDWSKMAPLR 306

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K +F + +    I  A+VV  +  K           KP + + F +   
Sbjct: 307  ILSFDIECAGRKGIFPEAEIDPVIQIANVVTRYGDK-----------KPFVRNVFCL--- 352

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D+ S   +  +   S E  +L      L ++D D++ G+NI  FD
Sbjct: 353  ---------------DQTSSIVATQILEFSQEEKMLRAWRDFLVEVDPDIITGYNICNFD 397

Query: 669  LDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               LL+RA+  +V     W+++  ++ +        + +   G      +   GRL  D 
Sbjct: 398  FPYLLNRAKYLKVKDFDQWTRLPSVRSTAKDSNFSSKQM---GNRDTKSTNTNGRLQLDL 454

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLS 786
                +   +  SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L 
Sbjct: 455  LQLIQRDHQLRSYTLNSVCSHFLGEQKEDVHYTMITELFNGTPESRRRLALYCLKDAYLP 514

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              LM  LS L    ++  ++G  +   L  ++ Q+++++  +      +K +VP+     
Sbjct: 515  QRLMDKLSCLENYTEMARVTGVPFNFLL--SKGQQIKFVSQMFRKALEQKLVVPNLRV-- 570

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                        G +D+                             Y G  V+EP +G Y
Sbjct: 571  -----------EGSDDQ-----------------------------YEGATVIEPTRGYY 590

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSKTT 948
            D  I  LDF SLYPSI+Q +N+C+TT           +E+  D  V       +   +  
Sbjct: 591  DAPIATLDFASLYPSIMQAHNLCYTTLISQKAIDAFKLEKDEDYTVTPTGDMFVTVKRRK 650

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +N +F  
Sbjct: 651  GLLAQILEELLSARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATNGKFPC 710

Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKA 1059
              +A   T  GR+++  T   V+    +        +VIYGDTDS+M+  G  D+A+A  
Sbjct: 711  LQIASSTTSYGRQMIEKTKQEVEAKYRIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMK 770

Query: 1060 IAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMV 1118
            +  +  Q V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ V
Sbjct: 771  LGEEAAQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETV 828

Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
            RRD  LL + V +  L  IL ++      + +  ++     D+   +V + K VITK LT
Sbjct: 829  RRDNCLLVQTVIEKVLRMILIDQDVLGAQDYVKETIA----DLLQNKVDMSKLVITKALT 884

Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
            K  + Y     Q HV++A R+K+    +    GD V Y++          + G     R 
Sbjct: 885  K--DDY--TAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------KGAAGSKNFERS 933

Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             D +   +    ID  YY   Q+   + R+   I G
Sbjct: 934  EDPIYVLENNVPIDTKYYLDNQLSKPLGRIFEPILG 969


>gi|256087234|ref|XP_002579779.1| DNA polymerase delta catalytic subunit [Schistosoma mansoni]
          Length = 1182

 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 178/689 (25%), Positives = 308/689 (44%), Gaps = 107/689 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+    +E+ LL +    + ++D D++ G+NI  FDL  L++RA   +V    +  
Sbjct: 421  VGSQVIS-HQTEKELLAKWSAFVREVDPDIITGYNIQNFDLPYLINRANTLKVDG--FEF 477

Query: 689  IGRLKRSEMPKLRKGRTIFGS-GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQL 745
            +GR+ R     +R+  T     G        I GR+  D   +  RD  LR  SY+L  +
Sbjct: 478  LGRI-RGARSTIREAMTQSKQMGRRENKFVNIDGRVQFDLLQILFRDYKLR--SYTLNAV 534

Query: 746  AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H+V+   Q    ++   L  Y   DA+L + L+  L  +    ++ 
Sbjct: 535  SYHFLEEQKEDVH-HNVITDLQNGDAQTRRRLAVYCLKDAYLPLRLLDKLMCIVNNIEMA 593

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L   +  +V   LL       Y++P   TY                    
Sbjct: 594  RVTGVPLTYLLTRGQQVKVVSQLLRKAHEHGYLLP---TY-------------------- 630

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                + ++G  + G  VLEP+KG Y++ I  LDF SLYPSI+  
Sbjct: 631  --------------------QSQQGDEFVGATVLEPRKGFYNEPIATLDFASLYPSIMMA 670

Query: 924  YNICFTT---VERSPDG--------LVPH-----------------LPSSKTTGVLPELL 955
            +N+C+TT   V  +P G        LV                   + S    G+LPE+L
Sbjct: 671  HNLCYTTLLQVNTTPHGSTGGGIQALVQRYNLTDEDYIKTPTGAYFVKSHICHGILPEIL 730

Query: 956  KNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI 1014
            + L+  R+  K  + K    L+ + LD +Q ALK++ANS+YG  G    +     ++  +
Sbjct: 731  QQLLSARKKAKAELAKETDPLRKRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISASV 790

Query: 1015 TQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ 1066
            T  GR ++  T   V+    +         VIYGDTDS+M   G+  + +A  +  +  +
Sbjct: 791  TSFGRLMIEQTKLHVEKKFTIANGYKHDAVVIYGDTDSVMCKFGVSTVTEAMELGRQAAE 850

Query: 1067 EVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLL 1125
             +++++ K + ++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VRRD S L
Sbjct: 851  IISEEFPKPIRLEFEKVYCPYLLINKKRYAGLYFTKPDR--HDKMDCKGIETVRRDNSPL 908

Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
               + + CL +IL +R     +    +    V  D+   ++ + + VI+K LTK  E Y 
Sbjct: 909  VANLINACLERILIDRDPNAAISYAQS----VISDLLCNRIDISQLVISKELTKTDEEY- 963

Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
                Q HV++A ++++    +  + GD VPY+I    G ++      A  A+  D L   
Sbjct: 964  -TGKQAHVELAAKMRKRDPGSAPNLGDRVPYVITAVGGKNT------AAYAKAEDPLYVL 1016

Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +    ID  YY   Q+   + R+   I G
Sbjct: 1017 EHNVPIDTKYYLENQLANPLLRIFEPILG 1045


>gi|448536009|ref|XP_003871049.1| Pol3 large subunit of DNA polymerase III [Candida orthopsilosis Co
            90-125]
 gi|380355405|emb|CCG24924.1| Pol3 large subunit of DNA polymerase III [Candida orthopsilosis]
          Length = 1147

 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 201/817 (24%), Positives = 356/817 (43%), Gaps = 133/817 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
             ++   + G SW+++ +        ++S C+ E ++D  KD+    S K   ++ P+ + 
Sbjct: 298  LMIDCNITGMSWITLPRTKYKLRSSKISTCQIECSIDY-KDLIAHQSEKEWLKMAPLRIL 356

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            + ++     K +F + +    I  A+VV    +K+          KP + + FTV     
Sbjct: 357  SFDIECAGRKGIFPEAEHDPVIQIANVV----SKLGD-------SKPFVRNVFTV----- 400

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                    N  A    S  GS +   E  E  L +     + ++D DV++G+N + FD+ 
Sbjct: 401  --------NTCA----SIIGSQIYEHEKEEDMLFHWKEF-VNEVDPDVIIGYNTANFDIP 447

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
             LL RA+  +V    +   GRLK     K      +F S   G     +  I GR+  D 
Sbjct: 448  YLLDRARALKV--HKFPYFGRLKGV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDL 502

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWL 785
                +   +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L
Sbjct: 503  LQFIQREYKLRSYTLNSVSAHFLGEQKEDV-QHSIITDLQNGNKETRRRLAVYCLKDAYL 561

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
             + L+  L  L    ++  ++G  +   L  +R Q+++ ++   FR              
Sbjct: 562  PLRLLDKLMCLVNYTEMARVTGVPFSYLL--SRGQQIK-VVSQLFR-------------- 604

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                               +   ED    N  S     +      Y G  V+EP++G YD
Sbjct: 605  -------------------KCLQEDIVIPNMKSEGSSEE------YEGATVIEPERGYYD 639

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG 949
              I  LDF+SLYPSI+  +N+C+TT+                 ++P+G     P  K  G
Sbjct: 640  VPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIRAFGLTEADYTKTPNGDYFVHPDKK-KG 698

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +L  L+  R+  KT +K      K   L+ +Q ALK++ANS+YG  G +  +    
Sbjct: 699  ILPTILNELLTARKKAKTDLKNEKDPFKKDVLNGRQLALKISANSVYGFTGATIGKLPCL 758

Query: 1009 PLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
             ++  +T  GRE++  T + VQ        +  + +VIYGDTDS+M+  G  D+     +
Sbjct: 759  AISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLDTCMKL 818

Query: 1061 AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
              +    V+ K++  ++++ + +Y   LL+ KK+YA +     D   ++ ++ KG++ VR
Sbjct: 819  GEEAANYVSTKFQNPIKLEFEKVYFPYLLINKKRYAGLYWTRPD--KFDKMDTKGIETVR 876

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L + V    L  IL ER+ +     +  ++     D+   +V L + VITK  +K
Sbjct: 877  RDNCRLVQNVITKVLEFILEERNVDKAQRFVKQTIA----DLLQNRVDLSQLVITKAYSK 932

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
                +  +  Q HV++A R+++    +  + GD V Y+I          + G     +  
Sbjct: 933  ----HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSE 980

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            D L   +    ID+ YY  QQ+   + R+   I G S
Sbjct: 981  DPLYVLENSLPIDVKYYLEQQMTKPLERIFIPILGES 1017


>gi|164655413|ref|XP_001728836.1| hypothetical protein MGL_4003 [Malassezia globosa CBS 7966]
 gi|159102722|gb|EDP41622.1| hypothetical protein MGL_4003 [Malassezia globosa CBS 7966]
          Length = 970

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 181/683 (26%), Positives = 307/683 (44%), Gaps = 97/683 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G +V+  E+ E  LL      + ++D DV++G+NIS FD   LL RA+  +V  + +  
Sbjct: 231  VGCHVMSFEN-EVQLLEAWSDFVQRVDPDVVIGYNISNFDFPYLLDRAKALKV--TTFPF 287

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR K  RSE          +G+  S    + + GR+  D     +   +  SYSL  ++
Sbjct: 288  LGREKNARSEAKDTHFSSKAYGTRDSK--HTELQGRIQLDMLQVMQRDYKLRSYSLNSVS 345

Query: 747  KTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
              +  K++KE   H ++   Q    E+   L  Y   DA+L   LM  L  L    ++  
Sbjct: 346  -FEFLKEQKEDVHHSLITELQNSGPEARRRLAVYCLKDAYLPQRLMDKLMCLINYTEMAR 404

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   +  +V   L    R   Y++P                          
Sbjct: 405  VTGVPFNYLLSRGQQIKVISQLFRKAREDGYLIPAY------------------------ 440

Query: 865  ELTNEDANFDNDTSHNDHRKGKRG-PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                               KG+ G   Y G  VL+PK+G YDK +  LDF SLYPSI+  
Sbjct: 441  -------------------KGEGGDEQYEGATVLDPKQGYYDKPVATLDFASLYPSIMMA 481

Query: 924  YNICFTT------------VERSPDGLVPH----LPSSKTTGVLPELLKNLVQRRRMVKT 967
            +N+C+TT            VE     + P+    +  +   G+LP++L+ L+  R+  K+
Sbjct: 482  HNLCYTTLVDKHTIDRLKLVEDKDYVVTPNNNYFVCKTVRKGLLPDVLEALLAARKAAKS 541

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +  L+   LD +Q ALK++ANS+YG  G +  R     ++  +T  GR+++  T 
Sbjct: 542  DLKNETDPLRRAVLDGRQLALKVSANSVYGFTGATVGRLPCLEISMSVTAYGRQMIEETK 601

Query: 1027 DLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+ +  ++        VIYGDTDS+M+  G+ ++ KA  +  +  + V+K + K + +
Sbjct: 602  RQVEKHYTVKNGYEHDAVVIYGDTDSVMVKFGVSELEKAMQLGAEAAEFVSKSFVKPIRL 661

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD   L + V + CL ++
Sbjct: 662  EFEKIYFPYLLINKKRYAG--LYWTRPEHYDKMDTKGIETVRRDNCRLVRTVIETCLRKM 719

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +R     V    +   +V  D+   ++ + + VI+K L K       A  Q HV++A 
Sbjct: 720  LIDRD----VRGAEDYTKQVISDLLQNKIDMSQLVISKALAKADY----AAKQAHVELAE 771

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD V Y+I          S G A   +  D L   +    ID  YY 
Sbjct: 772  RMRKRDPGSAPALGDRVAYVIV-------KGSKGSAAYEKSEDPLYALEHNIPIDTRYYL 824

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+   I G     L
Sbjct: 825  DNQLSKPLLRIFEPILGARASSL 847


>gi|2581888|gb|AAC47771.1| DNA polymerase alpha [Endotrypanum monterogeii]
          Length = 313

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 174/332 (52%), Gaps = 52/332 (15%)

Query: 686 WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
           WS IGRL    +P  +   T           +CI GRL+ D++  SR+  + V+Y L  L
Sbjct: 10  WSTIGRLDLKRLPCFQGSATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSL 64

Query: 746 A-KTQLN---KDRKEVGPH-DVLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
           A + QL    K      P   VL   M  T + +  ++      A LSM ++ HL VL L
Sbjct: 65  ADQMQLQGIAKGSNNFEPGISVLTPAMLATSQDIYNVLLQVCNCAVLSMAVISHLDVLRL 124

Query: 799 TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
           T++LT I+GNLW +TL G R++R+EYLLLH F   K+I PD+  YV++ K ++       
Sbjct: 125 TKRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDR--YVQDFKRSRGGGG--- 179

Query: 859 EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                                +    GKR   Y GG+VL+PK GLY  YILLLDFNSLYP
Sbjct: 180 ------------------DDDDGEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYP 221

Query: 919 SIIQEYNICFTTVERSPDGLVPHLP-------SSKTTG---------VLPELLKNLVQRR 962
           S+IQE+NICFTTV+R    ++   P       S    G         VLP+++K+LV  R
Sbjct: 222 SLIQEFNICFTTVDRKDQSVIEVPPPENLICASCAGAGLSAPCLHKCVLPKVIKSLVDSR 281

Query: 963 RMVKTWMKTASGLK-IQQLDIQQQALKLTANS 993
           R VK  MKT      +  L+I+Q+ALKLTANS
Sbjct: 282 REVKRLMKTEKDPNSLALLEIRQKALKLTANS 313


>gi|2581892|gb|AAC47773.1| DNA polymerase alpha [Leishmania herreri]
          Length = 313

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 174/332 (52%), Gaps = 52/332 (15%)

Query: 686 WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
           WS IGRL    +P  +   T           +CI GRL+ D++  SR+  + V+Y L  L
Sbjct: 10  WSTIGRLDLKRLPCFQGSATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSL 64

Query: 746 A-KTQLN---KDRKEVGPH-DVLK--MFQTLESLMELIEYGETDAWLSMELMFHLSVLPL 798
           A + QL    K      P   VL   M  T + +  ++      A LSM ++ HL VL L
Sbjct: 65  ADQMQLQGIAKGSNNFEPGISVLTPAMLATSQDIYNVLLQVCNCAVLSMAVISHLDVLRL 124

Query: 799 TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
           T++LT I+GNLW +TL G R++R+EYLLLH F   K+I PD+  YV++ K ++       
Sbjct: 125 TKRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDR--YVQDFKRSRGGGG--- 179

Query: 859 EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
                                +    GKR   Y GG+VL+PK GLY  YILLLDFNSLYP
Sbjct: 180 ------------------DEDDGEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYP 221

Query: 919 SIIQEYNICFTTVERSPDGLVPHLP-------SSKTTG---------VLPELLKNLVQRR 962
           S+IQE+NICFTTV+R    ++   P       S    G         VLP+++K+LV  R
Sbjct: 222 SLIQEFNICFTTVDRKDQSVIEVPPPENLICASCAGAGLSAPCLHKCVLPKVIKSLVDSR 281

Query: 963 RMVKTWMKTASGLK-IQQLDIQQQALKLTANS 993
           R VK  MKT      +  L+I+Q+ALKLTANS
Sbjct: 282 REVKRLMKTEKDPNSLALLEIRQKALKLTANS 313


>gi|207347015|gb|EDZ73334.1| YDL102Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1097

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 201/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S         G  Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQAS---------GDQYEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|255716712|ref|XP_002554637.1| KLTH0F09966p [Lachancea thermotolerans]
 gi|238936020|emb|CAR24200.1| KLTH0F09966p [Lachancea thermotolerans CBS 6340]
          Length = 1095

 Score =  177 bits (448), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 197/802 (24%), Positives = 350/802 (43%), Gaps = 143/802 (17%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++   K+S  P  Q+VS C+ E+ ++  KD+    +    +   P+ + + ++
Sbjct: 262  ITGMSWITLPEGKYSMTPPNQKVSTCQLEVRINF-KDLIARPAEGEWSHSAPLRILSFDI 320

Query: 560  KT-----VFNKRQDVNEIVS-ASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            +      VF    DV+ ++  A+VV    +            K  + + FTV        
Sbjct: 321  ECSGRVGVF-PEPDVDPVIQIANVVSVAGSS-----------KSFIRNVFTV-----NSC 363

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P+             GS +     +E  +L      + + D DV++G+N + FDL  L+
Sbjct: 364  SPI------------TGSQIFE-HKTENEMLKHWRQFVVETDPDVIIGYNTANFDLPYLI 410

Query: 674  HRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCS 731
             RA+  ++    +   GRL   + E+ +       +G+  S  I   I GRL  D F   
Sbjct: 411  DRARALKIEE--FPYFGRLSNVKQEVKESVFSSKAYGTRTSKNI--NIDGRLQLDLFQFV 466

Query: 732  RDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMEL 789
            +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+L + L
Sbjct: 467  QREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISSLQNGDSETRRRLAVYCLKDAFLPLRL 525

Query: 790  MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM 849
            M  L  L    ++  ++G  +   L   +  +V   L         ++P+         M
Sbjct: 526  MEKLMALVNYTEMARVTGVPFSYLLSRGQQIKVVSQLFRKCLQIDTVIPN---------M 576

Query: 850  AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYIL 909
              Q S+                                   Y G  V+EP +G YD  I 
Sbjct: 577  QSQGSDE---------------------------------QYEGATVIEPIRGYYDLPIA 603

Query: 910  LLDFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHLPSSKT-TGVL 951
             LDFNSLYPSI+  +N+C+TT+                   +P+G   +  +SK  +G+L
Sbjct: 604  TLDFNSLYPSIMMAHNLCYTTLASKTTVETLKLKKDEEYIITPNG--DYFVTSKVRSGIL 661

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            PE+L  L+  R+  K  +K      K   L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 662  PEILYELINARKRAKNDLKAEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAI 721

Query: 1011 AELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +  +T  GR ++  T + V+   +L+        V+YGDTDS+M+  G  D+A+A  +  
Sbjct: 722  SSSVTSFGRTMIEKTKEAVEEKYSLKNGFKHDAVVVYGDTDSVMVKFGTHDLAEAMELGT 781

Query: 1063 KVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+  +K  + ++ +  Y   LL+ KK+YA   + + +   Y+ +++KGL  VRRD
Sbjct: 782  EAAAYVSSLFKNPINLEFEKAYFPYLLINKKRYAG--LYWTNPNKYDKLDQKGLASVRRD 839

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
               L   V +  L +IL +R  +  ++ I     ++ E++   +  + K +I+KTL    
Sbjct: 840  SCPLVSIVMNKVLKKILIDRDVDGALKFIK----EIIEEILHNRADISKLIISKTLA--- 892

Query: 1182 EAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
               P+  N QPH  +  R+K+    TG + GD V Y++        G +  +  RA  P 
Sbjct: 893  ---PNYTNPQPHAVLTERMKKRD-GTGPNVGDRVDYVVI-------GGNDKLYNRAEDP- 940

Query: 1241 ELKKGDGKWMIDIDYYASQQIH 1262
             L   +    ID  YY + Q+ 
Sbjct: 941  -LYVLEHNIQIDSKYYLTNQLQ 961


>gi|173384|gb|AAA35303.1| DNA polymerase delta [Schizosaccharomyces pombe]
          Length = 1086

 Score =  177 bits (448), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 174/656 (26%), Positives = 292/656 (44%), Gaps = 104/656 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---G 710
            +D DVL+G+NI  FD+  LL RA+  R+ +  +  +GR+       + K  T F S   G
Sbjct: 372  VDPDVLIGYNICNFDIPYLLDRAKSLRIHN--FPLLGRIH--NFFSVAK-ETTFSSKAYG 426

Query: 711  ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--T 768
                  + I GRL  D     +   +  SYSL  +    L + +++V  + ++   Q  T
Sbjct: 427  TRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVH-YSIITDLQNGT 485

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
             +S   L  Y   DA+L   LM  L       ++  ++G  +   L  AR Q+++ +   
Sbjct: 486  ADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL--ARGQQIKVI--- 540

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
                              +++  +   H +   N+                   R     
Sbjct: 541  ------------------SQLFCKALQHDLVVPNI-------------------RVNGTD 563

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-------------- 934
              Y G  V+EP KG YD  I  LDF+SLYPSI+Q +N+C+TT+  S              
Sbjct: 564  EQYEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDY 623

Query: 935  ---PDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
               P+G   + PH+      G+LP +L +L+  R+  K  +K  +   K   LD +Q AL
Sbjct: 624  SVTPNGDYFVKPHV----RKGLLPIILADLLNARKKAKADLKKETDPFKKAVLDGRQLAL 679

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIY 1039
            K++ANS+YG  G +N R     ++  +T  GR+++  T D+V+    +E        VIY
Sbjct: 680  KVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIY 739

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M+  G+  + +A  +  +    V+ ++   ++++ + +Y   LL+ KK+YA + 
Sbjct: 740  GDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLF 799

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
                D   Y+ ++ KG++ VRRD   L   V D  L ++L ++     VE       KV 
Sbjct: 800  WTRTD--TYDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQD----VEGAQLFTKKVI 853

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+   ++ + + VITK L+K       A    HV++A R+++    +  + GD V Y+I
Sbjct: 854  SDLLQNKIDMSQLVITKALSKTDY----AAKMAHVELAERMRKRDAGSAPAIGDRVAYVI 909

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                      + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 910  I-------KGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILG 958


>gi|171185774|ref|YP_001794693.1| DNA polymerase II [Pyrobaculum neutrophilum V24Sta]
 gi|170934986|gb|ACB40247.1| DNA polymerase Pol2 [Pyrobaculum neutrophilum V24Sta]
          Length = 784

 Score =  177 bits (448), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 179/669 (26%), Positives = 304/669 (45%), Gaps = 150/669 (22%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R +L   +  +   D DV+VG+N +GFD   L  RA+   VP  +  ++G L +     
Sbjct: 210  DRGVLRSFVEFVKSYDPDVVVGYNSNGFDWPYLAGRARAIGVPLRV-DRLGGLPQ----- 263

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKE 756
                ++++G  +       I GR   D +    +       +L ++A+       ++R  
Sbjct: 264  ----QSVYGHWS-------IVGRANVDLYGIVEEFPEIKLKTLDRVAEYFGVMRREERVL 312

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +  H + + ++       L +Y   D   ++ L   L  LP   QL+++SG    +    
Sbjct: 313  IPGHKIYEYWRDPGKRPLLRQYVLDDVRSTLGLADKL--LPFLIQLSSVSGLPLDQVAAA 370

Query: 817  ARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            +   RVE++LL +A+R  + + P++                  E+R  E           
Sbjct: 371  SVGNRVEWMLLRYAYRLGE-VAPNR------------------EEREYE----------- 400

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---- 931
                           Y G +VLEPK G+Y+  +L+LDF+S+YP+I+ +YN+   T     
Sbjct: 401  --------------PYKGAIVLEPKPGMYED-VLVLDFSSMYPNIMMKYNLSPDTYLEPG 445

Query: 932  -ERSPDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQ 983
                P+G+     V H       G +P++LK+LV+ R+ V+   K       + + LD +
Sbjct: 446  EPDPPEGVNAAPEVGHRFRRSPLGFVPQVLKSLVELRKAVREEAKRYPPDSPEFRILDER 505

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALK+ AN+MYG LG+  +R+Y + +AE +T   R IL+  ++  +  L + V+YGDTD
Sbjct: 506  QRALKVMANAMYGYLGWVGARWYKREVAESVTAFARAILKDVIEQAR-RLGIVVVYGDTD 564

Query: 1044 SIMI--HSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQ 1100
            S+ +  H  +D          K+IQ V +KY  +EI +D  Y ++L  + KK+YA +   
Sbjct: 565  SLFVKKHVNVD----------KLIQYVEEKY-GIEIKVDKDYAKVLFTEAKKRYAGL--- 610

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
             +DG     I+  G ++VR DWS L+KEV    +  IL+ R   +    +   + ++ E 
Sbjct: 611  LRDGR----IDIVGFEVVRGDWSELAKEVQLKVVEIILNSRDVAEARRRVTQYVREIIER 666

Query: 1161 MRSGQVALEKYVITKTLTK---PPEAYPDAKNQPHVQVALRLKQSGYSTGCS-------- 1209
            +R  +  ++  +I KTL K     +AYP     PHV  AL LK+ GY  G          
Sbjct: 667  LREYKFNVDDLIIWKTLDKELGEYKAYP-----PHVHAALILKRHGYKVGKGNMVGYVVV 721

Query: 1210 ------AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
                  +   +PYI+                     D++KK      ID++YY  +QI P
Sbjct: 722  KGGGKISEKALPYILL--------------------DDVKK------IDVEYYIERQIIP 755

Query: 1264 VVSRLCASI 1272
               R+   I
Sbjct: 756  AALRIAEVI 764


>gi|324120756|dbj|BAJ78769.1| DNA polymerase delta catalytic subunit [Stichotrema asahinai]
          Length = 1050

 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 167/657 (25%), Positives = 293/657 (44%), Gaps = 95/657 (14%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLK---RSEMPKLRKGRTIFGS 709
            +D D+  G+NI+ FD   L+ RA+   + + S  S+I  ++   R  + + + GR  F +
Sbjct: 335  IDPDLFTGYNINNFDFPYLIERAKHLSLENFSYLSRIRNVRSILRENVVQTKVGRRTFKA 394

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL 769
                       GR+  D ++  +  L+  SY+L  + +  LN+ +++V    +  +    
Sbjct: 395  IN-------FEGRIPYDMYVIVKRDLKLRSYTLNNVCQEILNEQKEDVHYSIITDLHNGD 447

Query: 770  ESLME-LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
            E   + L  Y   DA L M L+ HL+      ++  ++G +    L      +V   LL 
Sbjct: 448  EHTRKRLAVYCVKDADLPMRLINHLNCFTNDIEMARVTGVMLTSLLAKGEQVKVVAQLLR 507

Query: 829  AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
              +A  Y +P                 H V         N DA                 
Sbjct: 508  HCQAANYFMP----------------MHQV---------NLDAT---------------- 526

Query: 889  PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD-----------G 937
              + G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT+    D            
Sbjct: 527  EQFEGATVIEPIRGYYTNPIATLDFSSLYPSIMIAHNLCYTTLLNPGDKARYELTDDQIS 586

Query: 938  LVP----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTAN 992
            L P     + SS   G+LP++L++L+  R+  K  +K     +K   LD +Q ALK++AN
Sbjct: 587  LTPANNQFVKSSVRRGLLPQILESLLSARKRTKLQLKNELDPIKKSVLDGKQLALKISAN 646

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDS 1044
            S+YG  G    +     ++  +T  GR ++  T + V+N+         N  VIYGDTDS
Sbjct: 647  SVYGFTGAQVGKLPCLQISGSVTAYGRLMINMTKEEVENHFTVANGYESNARVIYGDTDS 706

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            +MI   +  I K+  +  +  +E++ K+   ++++ + +Y   LL+ KK+YA +     D
Sbjct: 707  VMIDFNVKAIEKSMELGREAAREISAKFIDPIKLEFEKVYFPYLLINKKRYAGLYFTRPD 766

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
               Y+ ++ KG++ VRRD   L  ++ + CL ++L +R  +  V        ++  D+  
Sbjct: 767  K--YDKMDCKGIETVRRDNCTLVVDLINTCLQKLLIDRDPDGAVMYAK----QIISDLLR 820

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
              + + + VITK LTK          Q H ++A ++ +         GD +PY+I     
Sbjct: 821  NDIDISQLVITKELTKNDY----QAKQAHSELAQKMAKRDPGNAPKLGDRIPYVI----- 871

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            T++  +    Q+A  P  +   +    ID  YY   QI   + R+   + G + E +
Sbjct: 872  TAASKNTPAFQKAEEP--IYVLENNIPIDTRYYLENQISKPLVRIFQPVLGDNAESI 926


>gi|241957481|ref|XP_002421460.1| DNA polymerase III, putative; DNA polymerase delta catalytic subunit,
            putative [Candida dubliniensis CD36]
 gi|223644804|emb|CAX40796.1| DNA polymerase III, putative [Candida dubliniensis CD36]
          Length = 1040

 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 234/995 (23%), Positives = 409/995 (41%), Gaps = 188/995 (18%)

Query: 328  EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGST---------HHSCCVVVKNMQR 378
            ++ DD S  F  LDA E     N    + FG  + G +         H+  C V K  Q 
Sbjct: 58   DLQDDIS--FQQLDAEEYRDRENTYARF-FGITQEGHSVLCNVTGFIHYFYCPVPKGFQE 114

Query: 379  CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
             +    N      D I K+E  ++ES                G    I      + V+N 
Sbjct: 115  NLTEFTNYLRVTFDGIEKVEITSKES--------------IWGFSNNIKTPFFKIYVNNN 160

Query: 439  IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
            I    K R AF   E+               DP +  D    N   LL          ++
Sbjct: 161  IA---KIRSAFQNGEVKN------------IDPCVTYD----NINYLLR--------LMI 193

Query: 499  KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
              K+ G SW+++ +        ++S C+ E ++D  +D+          ++ P+ + + +
Sbjct: 194  DCKITGMSWITLPQDKYKIVSNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRILSFD 252

Query: 559  L-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            +     K VF + +    I  A+VV             S   KP + + FTV        
Sbjct: 253  IECAGRKGVFPEAEHDPVIQIANVV-----------QKSGESKPFVRNVFTV-------- 293

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
                        +S  GS +   +  E  L++     + K+D DV++G+N + FD+  +L
Sbjct: 294  ---------NTCSSIIGSQIFEHKREEDMLMHWKEF-IIKVDPDVIIGYNTANFDIPYVL 343

Query: 674  HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLC 730
            +RA+   +  + +   GRLKR    K      +F S   G     +  I GR+  D    
Sbjct: 344  NRAKALGL--NDFPFFGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDLLQF 398

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSME 788
             +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y   DA+L + 
Sbjct: 399  IQREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFLPLR 457

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L  L    ++  ++G  +   L   +  +V   L      +  ++P+  +      
Sbjct: 458  LLDKLMCLVNYTEMARVTGVPFSYLLSRGQQIKVISQLFRKCLQENIVIPNLKS------ 511

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                            E TNE+                    Y G  V+EP++G YD  I
Sbjct: 512  ----------------EGTNEE--------------------YEGATVIEPERGYYDVPI 535

Query: 909  LLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKT-TGVL 951
              LDF+SLYPSI+  +N+C+TT+                 ++P+G   +  +SK   G+L
Sbjct: 536  ATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNG--DYFVNSKLRKGIL 593

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            P +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     +
Sbjct: 594  PTILDELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAI 653

Query: 1011 AELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +  +T  GRE++  T + VQ        +  + +VIYGDTDS+M+  G  D+     +  
Sbjct: 654  SSSVTAFGREMIEKTKNEVQEYYSRKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLGE 713

Query: 1063 KVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+ K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD
Sbjct: 714  EAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVRRD 771

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
               L + V    L  IL ER        +  ++     D+   ++ L + VITK  +K  
Sbjct: 772  NCRLVQNVITKVLEFILEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK-- 825

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              +  +  Q HV++A R+++    +  + GD V Y+I          + G     +  D 
Sbjct: 826  --HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSEDP 875

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            L   +    ID+ YY  QQ+   + R+   I G +
Sbjct: 876  LYVLENSLPIDVKYYLDQQLTKPLERIFIPILGET 910


>gi|156093327|ref|XP_001612703.1| DNA polymerase delta catalytic subunit [Plasmodium vivax Sal-1]
 gi|148801577|gb|EDL42976.1| DNA polymerase delta catalytic subunit, putative [Plasmodium vivax]
          Length = 1096

 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 210/803 (26%), Positives = 362/803 (45%), Gaps = 137/803 (17%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            +L+ +K+ G SWL   K  F   P  ++VS C  EI + S + +          ++P + 
Sbjct: 247  YLIDKKITGSSWLLCKKKLFHIRPRHKKVSNCSLEIDI-SYEHVEPMLLEGEYQQIPRLR 305

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
            V + +++ +    +   E  +  ++        + +L  +    G  S F         I
Sbjct: 306  VLSFDIECIKLDGKGFPEAKNDPIIQI------SSILYFQGDPIGKCSKF---------I 350

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
            F +   KE     S  GSNV+     E+ LL+     + +LD D L G+NI  FDL  +L
Sbjct: 351  FTL---KECA---SIPGSNVIWFHD-EKTLLDAWSEFITRLDPDFLTGYNIINFDLPYIL 403

Query: 674  HRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LC 730
            +R     +       +GR+K   S + +       FG+  +  I   I GR+  D + L 
Sbjct: 404  NRGTALNLKK--LKMLGRIKSISSVVKESSFSSKQFGTHETKEIN--INGRIQFDVYDLI 459

Query: 731  SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSME 788
             RD  +  SY+L  ++  +  K++KE   + ++   Q  + ES   +  Y   D  L + 
Sbjct: 460  KRDY-KLKSYTLNYVS-FEFLKEQKEDVHYSIMNDLQNESPESRKRIATYCIKDGILPLR 517

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
            L+  L  +    ++  ++G  +   L   +  +V   L    +   Y++P   TY+K   
Sbjct: 518  LIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYVIPS--TYIKSG- 574

Query: 849  MAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYI 908
                              +NE                     Y G  VLEP KG Y + I
Sbjct: 575  ------------------SNE--------------------KYEGATVLEPIKGYYIEPI 596

Query: 909  LLLDFNSLYPSIIQEYNICFTTVERSP---DGL-------------VPHLPSSKTTGVLP 952
              LDF SLYPSI+  +N+C++T+ ++    +GL             +  +  S   G+LP
Sbjct: 597  STLDFASLYPSIMIAHNLCYSTLVKNNAEIEGLKQEDVTSIQGKSNIKFVKRSVKKGILP 656

Query: 953  ELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQALKLTANSMYGCLG-FSNSRFYAKP 1009
             +++ L+  R+ VK  +K     KI +  L+ +Q ALK++ANS+YG  G  S  +     
Sbjct: 657  LIVEELIDARKKVKLLIKNEQN-KITKMVLNGRQLALKISANSVYGYTGAASGGQLPCLE 715

Query: 1010 LAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            +A  IT  GR ++  T + V+           N  V+YGDTDS+M+  G ++IA+A A+ 
Sbjct: 716  VAVSITTLGRCMIDKTKETVEKYYSKSNGFEHNSTVVYGDTDSVMVKFGTNNIAEAMALG 775

Query: 1062 GKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER------KG 1114
                Q ++K++   ++++ + +Y   LLL KK+YA        G+ Y   ER      KG
Sbjct: 776  KDAAQRISKEFLHPIKLEFEKVYCPYLLLNKKRYA--------GLLYTTPERHDKMDCKG 827

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD+ +L +++ +  L+++L E++ +  +E     +    +D+ +  + +   V+T
Sbjct: 828  IETVRRDFCILIQQMMETVLNKLLIEKNLQSAIEYTKCKI----KDLLTNNIDMSLLVVT 883

Query: 1175 KTLTKPPEAYPDAKNQ-PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
            K+L K      D + + PHV++A +LKQ   +T  + GD V YII   +G       G A
Sbjct: 884  KSLGK-----TDYETRLPHVELAKKLKQRDSATAPNVGDRVSYIIV--KGVK-----GQA 931

Query: 1234 QRARHPDELKKGDGKWMIDIDYY 1256
            Q  R  D L   D    ID ++Y
Sbjct: 932  QYERAEDPLYVLDNNLAIDYNHY 954


>gi|15922397|ref|NP_378066.1| DNA polymerase II [Sulfolobus tokodaii str. 7]
 gi|342306638|dbj|BAK54727.1| DNA polymerase [Sulfolobus tokodaii str. 7]
          Length = 781

 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 177/634 (27%), Positives = 280/634 (44%), Gaps = 125/634 (19%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D D++VG+NI+ FD   LL RA +  +                 +L  GR + G   S G
Sbjct: 231  DPDIIVGYNINNFDWPYLLERANIRGI-----------------RLDVGRRVNGE-PSQG 272

Query: 715  IMS--CIAGRLLCDTFLCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            +     I GRL  D +  ++ +       L  ++  L  L K +    R  V  +D+ K 
Sbjct: 273  VYGHYSITGRLNVDLYGFAQSIQEVKVKTLENIADYLGVLPKEK----RTIVEWYDIPKY 328

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            +   +    L++Y   DA      +     +P   +LT ISG    +    +   RVE+L
Sbjct: 329  WDDEKKRDILLKYNLDDA--KSAYLLGEVFIPFGIELTRISGLPLDQLSMASVGHRVEWL 386

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L+        ++P+K                  E+R  E                     
Sbjct: 387  LMREAYKYNELIPNK------------------EEREYE--------------------- 407

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--------SPDG 937
                +Y GGLV+ P  G+++  + +LDF+S+YPSI+ +YNI   T+ +        SP G
Sbjct: 408  ----SYEGGLVISPLPGIHED-VYVLDFSSMYPSIMIKYNIGPDTLVKGECENCWISPAG 462

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYG 996
               H       G+   +L+ L+Q R+ VK  M KT      + LD +Q+ALK+ AN+ YG
Sbjct: 463  ---HKFRKDPPGLYKNVLEKLIQERKEVKKLMEKTMDEYDKRVLDARQRALKVMANAFYG 519

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
             +G+  +R+Y+K  AE +T  GR+I+  +  + +      VIYGDTDSI +  G D    
Sbjct: 520  YMGWLGARWYSKEGAEAVTAWGRQIISESAKIAKEK-GFTVIYGDTDSIFVKGGGD---- 574

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGL 1115
                   +I E++ K+  LEI +D +YKR+   + KK+YA +    +DG     I+  G 
Sbjct: 575  ----INSLITEISSKF-GLEIKIDKIYKRVFFTENKKRYAGLT---EDGK----IDIVGF 622

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            + VR DW  L+K+V    +  IL     ED ++ +   +     D+R     +E  +I K
Sbjct: 623  EAVRGDWCDLAKQVQTNVIELILKSGKVEDAIKYVKTVIF----DLRRYNFRIEDLIIWK 678

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
            T+ K  + Y      PHV  A +  ++GY    S G  + Y+I    G  S  +      
Sbjct: 679  TIDKNLDEYD--VTAPHVVAAKKAAKAGYL--VSKGVKIGYVIVKGSGKISDKA------ 728

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
               P  L K   K  ID++YY  +QI PV  R+ 
Sbjct: 729  --EPYFLIKEKNK--IDVEYYIDKQIIPVAMRIL 758


>gi|62954913|gb|AAY23282.1| Similar to dna polymerase delta catalytic subunit (ec 2.7.7.7) [Oryza
            sativa Japonica Group]
          Length = 629

 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 202/407 (49%), Gaps = 40/407 (9%)

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT-- 948
            + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    D    +LP       
Sbjct: 111  FEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKT 170

Query: 949  -------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM 994
                         G+LPE+L+ L+  R+  K  +K A    +   LD +Q ALK++ANS+
Sbjct: 171  PSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSV 230

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIM 1046
            YG  G +  +     ++  +T  GR+++  T  LV++          N EVIYGDTDS+M
Sbjct: 231  YGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVM 290

Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
            +  G+  +  A  +  +    ++  + K ++++ + +Y   LL+ KK+YA   + + +  
Sbjct: 291  VQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAG--LYWTNPE 348

Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
             ++ ++ KG++ VRRD  LL K +   CL +IL +R     V+ + N++     D+   +
Sbjct: 349  KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTI----SDLLMNR 404

Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
            V L   VITK LTK  E Y  A    HV++A R+++   +T  + GD VPY+I       
Sbjct: 405  VDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAPTVGDRVPYVII------ 456

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              ++ G     R  D +   D    ID  YY   QI   + R+   I
Sbjct: 457  -KAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPI 502


>gi|332687549|emb|CBZ41215.1| catalytic subunit of DNA polymerase delta [Saccharomyces uvarum]
 gi|332687551|emb|CBZ41216.1| catalytic subunit of DNA polymerase delta [Saccharomyces uvarum]
 gi|332687553|emb|CBZ41217.1| catalytic subunit of DNA polymerase delta [Saccharomyces bayanus]
          Length = 1097

 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 361/818 (44%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIKPESRVSSCQLEVSINY-RNLISHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K D DV++G+N S FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSHWRDFIIKADPDVIIGYNTSNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVTD--FPYFGRLKNVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L+  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLLEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKGTVERLNFKLDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T + VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKNAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTADLKEAM 779

Query: 1059 AIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKQPINLEFEKAYFPYLLINKKRYAGLFWTNPDH--FDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++    +D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALTFVRETI----DDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I       +G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRD-GVGPNVGDRVDYVI-------TGGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|328855214|gb|EGG04342.1| hypothetical protein MELLADRAFT_53062 [Melampsora larici-populina
            98AG31]
          Length = 1067

 Score =  176 bits (446), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 209/876 (23%), Positives = 383/876 (43%), Gaps = 141/876 (16%)

Query: 483  CSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVS 540
            C+   ++ S    F++ +K+ G +W+ I    +      ++ S C+ E+  D+  D  +S
Sbjct: 201  CTTFESNISYTLRFMIDKKITGMNWIEIPAGTYQLRSPGKQASKCQIEL--DTSSDTIIS 258

Query: 541  SSSK-HVAEVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEW 594
             + +   +++ P  V + ++     K +F + +    I  A++V CH +   TP + +  
Sbjct: 259  HAPEGEWSKMAPFRVLSYDIECAGRKGIFPEAKIDPVIQIANLVTCHGS--STPFIRN-- 314

Query: 595  KKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKL 654
                       V  LD     +G             S V+  +  E  +L +  + + + 
Sbjct: 315  -----------VFTLDTCAHIVG-------------SQVIEFKKEED-MLAKWQLFVEEC 349

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D D+++G+N + FD+  LL RA+  +V  + + ++GR+K  +        +    G    
Sbjct: 350  DPDLVIGYNTTNFDMPYLLDRAKALKV--NTFPQLGRMKNIQTVVKDTHFSSKAYGTRDS 407

Query: 715  IMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESL 772
              + + GRL  D     +   +  SY+L  +    L + +++V  H ++   Q    ES 
Sbjct: 408  KETHLDGRLQLDLLQVMQRDYKLRSYTLNAVCAQFLGEQKEDVH-HTMITELQNGNSESR 466

Query: 773  MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
              L  Y   DA+L   LM  L       ++  ++G  +   L  +R Q+++ +     RA
Sbjct: 467  RRLAVYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNYLL--SRGQQIKVVSQLYRRA 524

Query: 833  KK--YIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
             +  YIVP                          +    D  FD                
Sbjct: 525  GEFSYIVP------------------------AMKYEGSDDQFD---------------- 544

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLVPH----- 941
              G +V++P +G YD  I  LDF SLYPSI+  +N+C+TT+  +      GLV +     
Sbjct: 545  --GAIVMDPIRGYYDVPIATLDFASLYPSIMMAHNLCYTTLTDAKTAKQLGLVENEDYII 602

Query: 942  -------LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANS 993
                   + +SK  G+L  +L++L+  R+  +  +K  +   K   LD +Q ALK++ANS
Sbjct: 603  TPNGDYFVKTSKRKGLLAIVLEDLLSARKRARAELKLETDPFKKAVLDGRQLALKVSANS 662

Query: 994  MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSI 1045
            +YG  G +  +    P+   +T  GRE++++T   V+           + +VIYGDTDS+
Sbjct: 663  VYGFTGATVGKLPCLPIPMSVTAFGREMIKTTKAEVEATYTKANGYEHDAQVIYGDTDSV 722

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
            M+  G  D+A +  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + +   
Sbjct: 723  MVRFGCKDLATSMRLGAEAADLVSTKFVKPIKLEFEKVYFPYLLISKKRYAG--LYWTKP 780

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
              ++ ++ KG++ VRRD   L + V + CL ++L +R     V+   +   +V  D+   
Sbjct: 781  EKHDKMDAKGIETVRRDNCRLVQTVIETCLKKMLIDRD----VQGAEDYTKQVIADLLQN 836

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            +V L + VITK L K       A  Q HV++A R+K+    +  + GD V Y+I   +G 
Sbjct: 837  KVDLSQLVITKALAKSDY----AAKQAHVELAKRMKKRDAGSAPALGDRVAYVII--KGP 890

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
                +       +  D L   +    ID  YY   Q+   + R+   I G   E+ +  L
Sbjct: 891  KDARAY-----EKSEDPLYVLENNLPIDTKYYLENQLSKPLMRIFEPILG---EKASSLL 942

Query: 1285 GLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGC 1320
              D ++       T+++     L+  V   E   GC
Sbjct: 943  AGDHTRIV-----TIATPTQGGLMGFVKRTETCLGC 973


>gi|324120708|dbj|BAJ78745.1| DNA polymerase delta catalytic subunit [Galloisiana yuasai]
          Length = 994

 Score =  176 bits (446), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 176/691 (25%), Positives = 307/691 (44%), Gaps = 114/691 (16%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS VL  +  E A+L      + ++D D+  G+NI+ FD   L+ R+   +V    +  
Sbjct: 257  VGSQVLSYKR-ESAMLKDWANFVREVDPDIFTGYNINNFDFPYLIDRSNHLKVQDFCF-- 313

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLT 743
            +GR+K  RS +          G   +  +   I GR+  D F     L+R+    SY+L 
Sbjct: 314  LGRVKNIRSVIKNQVLQSKQMGKRENKSVN--IEGRVPFDLFAV---LIRDYKLRSYTLN 368

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++   L + +++V  H+++   Q  T ++   L  Y   DA+L + L+  L  +    +
Sbjct: 369  AVSFHFLQEQKEDVQ-HNIITDLQNGTPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYME 427

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L   +  +V   LL   + K Y++P                       
Sbjct: 428  MARVTGVSLSCLLTRGQQIKVVSQLLRKAKEKGYLIPT---------------------- 465

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                H  G +   Y G  V+EPK+G Y   I  LDF+SLYPSI+
Sbjct: 466  --------------------HNGGVQEDQYEGATVIEPKRGYYGDPIATLDFSSLYPSIM 505

Query: 922  QEYNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMV 965
              +N+C+TT+                 ++P   +  + SS   G+LPE+L++L+  R+  
Sbjct: 506  MAHNLCYTTLLPVSVKDKLGLTQDQFTKTPSNNL-FVKSSVRKGLLPEILESLLSARKKA 564

Query: 966  KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
            K  +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  
Sbjct: 565  KNDLKNETNPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQ 624

Query: 1025 TVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-L 1075
            T   V++   +         VIYGDTDS+M+  G+  + +A ++  +  + V+ K+   +
Sbjct: 625  TKQEVEDRYKIANGFKYDAMVIYGDTDSVMVKFGVKTLEEAMSLGREAAEYVSAKFVSPI 684

Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
            +++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL 
Sbjct: 685  KLEFEKVYFPYLLINKKRYAGLYFTKPDH--YDKMDCKGIETVRRDNSPLVANMMNTCLQ 742

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            ++L ER     V+       +V  D+   ++ + + VITK L K          Q HV++
Sbjct: 743  KLLIERDPTGAVDYAK----QVISDLLCNRIDISQLVITKELAKNDY----TAKQAHVEL 794

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM----- 1250
            A ++++    T    GD VPYII             +A     P  +K  D  ++     
Sbjct: 795  ASKMRKRDAGTAPKLGDRVPYII-------------VAAAKNTPAYMKAEDPIYVLENNI 841

Query: 1251 -IDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             ID +YY   Q+   + R+   I G   E +
Sbjct: 842  PIDSNYYLENQLSKPLLRIFTPILGDKAESI 872


>gi|328865112|gb|EGG13498.1| DNA polymerase delta catalytic subunit [Dictyostelium fasciculatum]
          Length = 1801

 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 187/731 (25%), Positives = 329/731 (45%), Gaps = 112/731 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             G++VL     E++LL      + K+D D+++G+NI+ FDL  L+ R++  ++    +S 
Sbjct: 1066 VGAHVLT-HPDEKSLLREWRKFIIKVDPDIIIGYNIANFDLPYLIERSRALKIGD--FSL 1122

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            + R+K +   K++K    F S   G   G    + GR   D     +   +  SYSL  +
Sbjct: 1123 LSRIKTTH-SKIKKAT--FSSQNLGTREGKEVSMPGRTQLDIIQAIQRDHKLSSYSLNNV 1179

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L K++KE   + ++   Q  T +    L  Y   DA L ++L+  L +L    +++
Sbjct: 1180 SAHFL-KEQKEDVHYSIIADLQNGTDDDRRRLAVYCIKDAQLPLKLLDKLMILINYAEMS 1238

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G      L      +V   L      +  ++P K                 V D +V
Sbjct: 1239 RVTGVPLSYLLGRGEGIKVVSQLYRKAMEEDLLLPTK----------------RVSDVDV 1282

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
                                      ++ G  V++P+ G YD+ I  LDF SLYPSI+  
Sbjct: 1283 --------------------------SFQGAYVIDPQVGFYDEPIATLDFTSLYPSIMMA 1316

Query: 924  YNICFTTVERSPD---------GLVP----HLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +N+C+TT+  + D          L P     +  S   G+LP++L+ L+  R+  K  +K
Sbjct: 1317 HNLCYTTLLTAADKEKVDPNDYTLTPSGSAFIKPSHRKGILPKILEELLGARKKAKDDLK 1376

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
                  K   LD +Q ALK++ANS+YG  G    +     ++  +T  GR +L +T + V
Sbjct: 1377 NEKDPFKRAVLDGRQLALKISANSVYGFTGARVGKLPCLDISRSVTAFGRVMLDTTKNYV 1436

Query: 1030 QNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKK--YKCLEIDL 1079
            +N   +        ++IYGDTDS+M+  G+  +A+A  +  K  +E+  K   + + +D 
Sbjct: 1437 ENTYTIANGYENDAKIIYGDTDSVMVKFGVKTVAEAIELGRKASKEITAKCFIRPINLDF 1496

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   ++ ++ KGL++VRRD   L + V    L++IL 
Sbjct: 1497 EKVYYPYLLINKKRYAGLFWTKTDT--HDKMDVKGLEVVRRDNCPLVRMVISTVLNKILI 1554

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP-HVQVALR 1198
            ++     ++S       +  D+   ++ +   VITK L+K      D K +  H +VAL+
Sbjct: 1555 DKD----IKSAEEFTKDIVSDLLQNKIDISMLVITKALSK-----NDYKGKVIHNEVALK 1605

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            ++    ST    GD VP++I   QG  +     + ++A  P  L   +    +D  YY  
Sbjct: 1606 MRALNPSTAPVLGDRVPFVI--TQGIKNAP---LHEKAHDP--LHVLENNIQLDTKYYCD 1658

Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYR 1318
             Q+   + R+   I   +PE +           QS P       P+ S   ++   E+ R
Sbjct: 1659 HQLRGPLMRIFEPILA-NPESIFTGDHTRSVHIQSAP-------PTKSFFSSL---EKKR 1707

Query: 1319 GCEPLILSCPS 1329
             C    ++CP+
Sbjct: 1708 KC----MACPN 1714


>gi|429852563|gb|ELA27695.1| DNA polymerase delta catalytic subunit [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1102

 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 177/692 (25%), Positives = 306/692 (44%), Gaps = 115/692 (16%)

Query: 632  NVLCCESS-------------ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
            NV C +++             E  +L+     L K+D D+++G+NI+ FD   LL RA+ 
Sbjct: 348  NVFCLDTTSPIVATQILEFQKEEKMLSEWQKFLVKVDPDIIIGYNIANFDFPYLLDRARH 407

Query: 679  CRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDL 734
             +V     WS+I  +        +   T F S   G      +   GRL  D     +  
Sbjct: 408  LKVNGFEYWSRIPSIAS------KAKETNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRD 461

Query: 735  LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHL 793
                SY+L  +    L + +++V    + ++F  T ES   L  Y   DA+L   LM  L
Sbjct: 462  HHLRSYTLNSVCSNFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKL 521

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAK 851
            S L    ++  ++G  +   L  +R Q+V+++  L      +K ++P             
Sbjct: 522  SCLENYTEMARVTGIPFNFLL--SRGQQVKFISQLFRKALEQKLVIP------------- 566

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
                                N  +++S            Y G  V+EP +G YD  I  L
Sbjct: 567  --------------------NLRSESSDEQ---------YEGATVIEPTRGYYDVPIATL 597

Query: 912  DFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLPSSKTTGVLPEL 954
            DF SLYPSI+Q +N+C+TT      +E+           +P+G    +   K  G+L ++
Sbjct: 598  DFASLYPSIMQAHNLCYTTLVNKKAIEKFSLVKDEDYIVTPNGDT-FVTVKKRKGLLAQI 656

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +  +     +A  
Sbjct: 657  LEELLAARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLEIASS 716

Query: 1014 ITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
             T  GR+++  T + V+           + +VIYGDTDS+M+  G  D+ +A  +  +  
Sbjct: 717  TTSFGRQMIMKTKEEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKDLPEAMKLGEEAA 776

Query: 1066 QEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
              V+ K+ K ++++ + +Y   LL+ KK+YA   + +     Y+ ++ KG++ VRRD  L
Sbjct: 777  GFVSSKFVKPIKLEFEKVYFPYLLINKKRYAG--LYWTKPEKYDKMDTKGIETVRRDNCL 834

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L + V +  L  IL ++  +   + + +++     D+   +V + K VITK LTK  + Y
Sbjct: 835  LVQTVIEKVLRMILIDQDVQGAQDYVKDTIA----DLLQNKVDMSKLVITKALTK--DDY 888

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
              A  Q HV++A R+K+    +    GD V Y++          + G        D +  
Sbjct: 889  --AAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMV-------KGAAGSKNYENSEDPIYV 939

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
             +    ID  YY   Q+   + R+   I G +
Sbjct: 940  LENNVPIDTKYYLDNQLAKPLGRIFEPILGET 971


>gi|66809121|ref|XP_638283.1| DNA polymerase delta catalytic subunit [Dictyostelium discoideum AX4]
 gi|74853854|sp|Q54N97.1|DPOD1_DICDI RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=DNA polymerase III
 gi|60466714|gb|EAL64765.1| DNA polymerase delta catalytic subunit [Dictyostelium discoideum AX4]
          Length = 1104

 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 174/674 (25%), Positives = 299/674 (44%), Gaps = 92/674 (13%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
            +S  G++V+     E  LL      + K+D DV++G+NI  FD+  L+ RA+  ++P   
Sbjct: 366  SSIVGAHVIP-HKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPE-- 422

Query: 686  WSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
            ++ +GR+K   S++   R   +  G+  S  I   + GR   D     +   +  SYSL 
Sbjct: 423  FALLGRIKTTISKIKSTRFSSSNLGTRESKEI--SMPGRTQFDLMQAIQRDHKLTSYSLN 480

Query: 744  QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
             ++   L K++KE     ++   Q  T +    L  Y   DA L M L+  L +L    +
Sbjct: 481  NVSAHFL-KEQKEDVHFSIISDLQNGTDDDRRRLAVYCIKDAVLPMRLLDKLMILINYTE 539

Query: 802  LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            +  ++G      L      +V   L      + +++P                       
Sbjct: 540  MARVTGVPLSYLLGRGEGIKVLSQLYRKAMVENFLIPT---------------------- 577

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                ++   +G  + G +V+EP  G YD  I  LDF SLYPSI+
Sbjct: 578  --------------------YKVTGKGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIM 617

Query: 922  QEYNICFTTV------ERSPDGLVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTW 968
              +N+C++T+      ++ P  +    P       S    G+LP +L+ L+  R+  K  
Sbjct: 618  MAHNLCYSTLLSAEEAKKLPPEIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDE 677

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K      K   LD +Q ALK++ANS+YG  G    +     ++  +T  GRE+L  T  
Sbjct: 678  LKNEKDPFKRAVLDGRQLALKISANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKK 737

Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
            +V+    +         +IYGDTDS+M+  G+  +A+A  +     + V   + + + +D
Sbjct: 738  IVEERYTIANGYKHDAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLD 797

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             + +Y   LL+ KKKYA +     D   ++ ++ KGL+MVRRD  LL + V    L +IL
Sbjct: 798  FEKVYYPYLLMAKKKYAGLYWTKPDI--HDRMDVKGLEMVRRDTCLLVRNVVSTILKKIL 855

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             E+  +   E   +    V  D+   ++ L   VITK L+K    Y       H ++A +
Sbjct: 856  IEKDLKSAEEYTKS----VISDLLQNRLDLSMLVITKALSK--TQY--KGKVIHNELARK 907

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            ++    +T  + GD VPY++   QG+       I ++A  P  L   +   ++D  YY  
Sbjct: 908  MRARDPATAPNLGDRVPYVVI--QGSKGAP---IYEKAEDP--LYALEHNILLDCQYYLD 960

Query: 1259 QQIHPVVSRLCASI 1272
            +Q+   + R+   I
Sbjct: 961  KQLKAPLIRIFKPI 974


>gi|7416107|dbj|BAA93703.1| DNA polymerase B3 [Sulfurisphaera ohwakuensis]
          Length = 781

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 177/634 (27%), Positives = 283/634 (44%), Gaps = 125/634 (19%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D D++VG+NI+ FD   LL RA +  +                 +L  GR + G   S G
Sbjct: 231  DPDIIVGYNINNFDWPYLLERANIRGI-----------------RLDVGRRVNGE-PSQG 272

Query: 715  IMS--CIAGRLLCDTFLCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            +     I GRL  D +  ++ +       L  ++  L  L K +    R  V  +D+ K 
Sbjct: 273  VYGHYSITGRLNVDLYGFAQSIQEVKVKTLENIADYLGVLPKEK----RTIVEWYDIPKY 328

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            +   +    L++Y   DA      +     +P   +LT ISG    +    +   RVE+L
Sbjct: 329  WDDEKKRDILLKYNLDDA--KSAYLLGEVFIPFGIELTRISGLPLDQLSMASVGHRVEWL 386

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L+        ++P+K                  E+R  E                     
Sbjct: 387  LMREAYKYNELIPNK------------------EEREYE--------------------- 407

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--------SPDG 937
                +Y GGLV+ P  G++++ + +LDF+S+YPSI+ +YNI   T+ +        SP G
Sbjct: 408  ----SYEGGLVISPLPGIHEE-VYVLDFSSMYPSIMIKYNIGPDTLVKGECENCWVSPVG 462

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMYG 996
               H    +  G+   +L+ L+Q R+ VK  M KT      + LD +Q+ALK+ AN+ YG
Sbjct: 463  ---HKFRKEPPGLYKNVLEKLIQERKEVKKLMEKTIDEYDKRVLDARQRALKVMANAFYG 519

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAK 1056
             +G+  +R+Y+K  AE +T  GR+I+  +  + +      VIYGDTDSI +  G D    
Sbjct: 520  YMGWLGARWYSKEGAEAVTAWGRQIISDSAKIAKEK-GFTVIYGDTDSIFVKGGGD---- 574

Query: 1057 AKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGL 1115
                   +I E++ K+  LEI +D +YKR+   + KK+YA +    +DG     I+  G 
Sbjct: 575  ----INSLITEISSKF-GLEIKIDKIYKRVFFTENKKRYAGLT---EDGK----IDIVGF 622

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            + VR DW  L+K+V    +  IL     ED ++ + + +     D+R     +E  +I K
Sbjct: 623  EAVRGDWCDLAKQVQTNVIELILKSGKVEDAIKYVKSVIF----DLRRYNFRIEDLIIWK 678

Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
            T+ K  + Y      PHV  A +  ++GY    S G  + Y+I    G  S  +      
Sbjct: 679  TIDKNLDEYD--VTAPHVVAAKKAAKAGYL--VSKGVKIGYVIVKGSGKISDKA------ 728

Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
               P  L K   K  ID++YY  +QI PV  R+ 
Sbjct: 729  --EPYFLVKEKNK--IDVEYYIDKQIIPVALRIL 758


>gi|321470374|gb|EFX81350.1| hypothetical protein DAPPUDRAFT_317527 [Daphnia pulex]
          Length = 1139

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 174/675 (25%), Positives = 304/675 (45%), Gaps = 108/675 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            E  LL++    + ++D D++ G+NI  FDL  LL+RA+   +    +  +GR+K  +S +
Sbjct: 415  EDELLDKWADFVREVDPDIITGYNICNFDLPYLLNRAK--HLKRGKFDFLGRIKDKKSAI 472

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDR 754
             +        G   +  I   I GR+  D  L    LLR+    SY+L  ++   L + +
Sbjct: 473  KETMIQSKQMGRRENKSIN--IEGRVQFDLLLV---LLRDYKLRSYTLNSVSYHFLCEQK 527

Query: 755  KEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            ++V  H ++   Q    ++   L  Y   DA L + L+  L  L    ++  ++G     
Sbjct: 528  EDVH-HSIITELQEGNPQTRRRLAVYCLKDAHLPLRLLDKLMCLTNYMEMARVTGVPLSY 586

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
             L   +  +V   LL   + +  ++P                                  
Sbjct: 587  LLTRGQQIKVVSQLLRKAKEQGLLMP---------------------------------- 612

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV- 931
                       K + G  + G  V+EP +G Y + I  LDF+SLYPSI+  +N+C+T++ 
Sbjct: 613  ---------VHKAEAGEEFEGATVIEPIRGYYSQPIATLDFSSLYPSIMMAHNLCYTSLL 663

Query: 932  -ERSPDGL-------VP----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQ 978
              R  D L        P     + +S   G+LPE+L+ L+  R+  K  +   +  L+ +
Sbjct: 664  NPRDKDKLKEDQYIKTPAGNYFVKASVRKGLLPEILEALLAARKKAKKDLAVETDPLRKK 723

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-- 1036
             LD +Q ALK++ANS+YG  G    +     +++ +T  GR ++  T   V+    +E  
Sbjct: 724  VLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEKTSTEVEAKFRVENG 783

Query: 1037 ------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLL 1089
                  VIYGDTDS+M+  G+  +A+A  +  +  + V+ K+ K + ++ + +Y   LL+
Sbjct: 784  YAHDAKVIYGDTDSVMVKFGVSTVAEAMVLGREAAEFVSAKFIKPINLEFEKVYFPYLLI 843

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             KK+YA   + +     ++ ++ KG++ VRRD   L   + + CL +IL +R  +  +E 
Sbjct: 844  NKKRYAG--LYWTKPEQFDKMDCKGIETVRRDNCQLVANLINTCLQKILMDRDPDGALEY 901

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCS 1209
               ++     D+   +V +   VITK LTK  + Y  A  Q HV++A ++++    T   
Sbjct: 902  AKQTI----SDLLCNKVDISLLVITKELTKTDKDY--ANKQAHVELAHKMRKRDAGTAPK 955

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYYASQQIHP 1263
             GD VPY+I             +A     P  LK  D  ++      ID  YY   Q+  
Sbjct: 956  LGDRVPYVI-------------VAAAKNTPAYLKAEDPIYVLENSIPIDAQYYLENQLSK 1002

Query: 1264 VVSRLCASIEGTSPE 1278
             + R+   I G+  E
Sbjct: 1003 PLVRIFEPILGSKAE 1017


>gi|169806198|ref|XP_001827844.1| DNA polymerase delta catalytic subunit [Enterocytozoon bieneusi H348]
 gi|161779292|gb|EDQ31315.1| DNA polymerase delta catalytic subunit [Enterocytozoon bieneusi H348]
          Length = 968

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 295/645 (45%), Gaps = 94/645 (14%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL-KRSEMPKLRKGRTIFGSGASP 713
            + D+++G+NI  FD   LL RA + ++    ++++GR  K S+  K  +  + FGS    
Sbjct: 269  NPDIILGYNIKNFDFPYLLERANILKLKE--FARLGRTNKISKSIKKTQSSSQFGSLEFN 326

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LES 771
             I   I GR++ D F   +   +  SYSL  ++   L K++KE   +  +   Q    E+
Sbjct: 327  DIT--IEGRIIFDIFHILKRDFKLRSYSLNSVSMHFL-KEQKEAVSYSSIHSLQNGNKET 383

Query: 772  LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR 831
               +  Y   DA+L + +   L++     +L  ++       L    + +V  L+     
Sbjct: 384  RRRIATYCLKDAYLPLRIFKKLNIFTKYIELARVTYVPIEFFLTRGTSIKVLSLIYKEAN 443

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
            A  YI+PD      E K                         D DT             Y
Sbjct: 444  AYNYIIPDM-----EIK-------------------------DGDTK------------Y 461

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT--------------VERSPDG 937
             G  V+ P KG Y   I +LDF SLYPSII   N+C+TT              + ++P G
Sbjct: 462  DGAFVINPLKGFYKDPIAVLDFCSLYPSIIISNNLCYTTLLNDKMAARFKELDIIKTPTG 521

Query: 938  LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYG 996
                + S    G+LP +L+ L+  R++ K  +K     ++Q+ LD +Q ALKL ANS+YG
Sbjct: 522  DC-FVSSHIKKGLLPIILEKLLSNRKLTKKLLKETEDPELQKILDGRQLALKLCANSIYG 580

Query: 997  CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIH 1048
              G    +     +++  T  GR+++  T +L+++          ++ VIYGDTDS+M++
Sbjct: 581  FTGAQVGQLPCISISQSTTAFGRDMISKTKNLIESKYSKASGFTHDVIVIYGDTDSVMLN 640

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
                +I     +A ++ + +   + K + ++ + +Y   LL+ KK+YA   + F +    
Sbjct: 641  FQEPNIELVFKLAKEIAEVITAIFIKPVALEFEKVYCPYLLMNKKRYAG--LLFTNPYKS 698

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
            + I+ KG++ VRRD   L K + D CL++IL E+  +  ++ I    MK+ E + + ++ 
Sbjct: 699  DKIDTKGIETVRRDNCELVKIIIDNCLNKILYEKDIQGAIDLIK---MKIDE-LYNDKID 754

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            + + VI+K  TK       A    H ++  +L++ G       GD +PY+I C    +  
Sbjct: 755  ISQLVISKAYTKSNYNVKSA----HTELVNKLRERG--VEIRIGDRIPYVIICGDKKTQ- 807

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                I  R+  P  +   +    IDI+YY   Q+   + RL   I
Sbjct: 808  ----IYNRSEDP--IYVLENNIPIDIEYYIEHQLSNPIKRLFEPI 846


>gi|332028725|gb|EGI68756.1| DNA polymerase delta catalytic subunit [Acromyrmex echinatior]
          Length = 1010

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 152/569 (26%), Positives = 256/569 (44%), Gaps = 87/569 (15%)

Query: 739  SYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLP 797
            SY+L  ++   L + +++V   D+  +     ++   L  Y   DA+L + L+  L  + 
Sbjct: 377  SYTLNAVSYHFLQEQKEDVQHKDITGLQNGNAQTRRRLAVYCLKDAYLPLRLLDKLMCII 436

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
            +  ++  ++G      L   +  +V   LL   R K Y++P                 HG
Sbjct: 437  IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMP-------------VHQGHG 483

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
             +++                             + G  V+EPK+G Y+  I  LDF+SLY
Sbjct: 484  TDEQ-----------------------------FEGATVIEPKRGYYNDPIATLDFSSLY 514

Query: 918  PSIIQEYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
            PSII  +N+C+TT                +  +P   +  + +S   G+LPE+L+NL+  
Sbjct: 515  PSIIMAHNLCYTTLLTIAKKKELNIQEDQITTTPSKSL-FIKNSVRKGILPEILENLLVA 573

Query: 962  RRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R+  KT +K  +  LK + LD +Q ALK++ANS+YG  G    +     ++  +T  GR 
Sbjct: 574  RKKAKTELKQETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRT 633

Query: 1021 ILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY 1072
            ++  T   V+++  +E        VIYGDTDS+M+  G+ DI  A  +  +    V  K+
Sbjct: 634  MIEQTKQEVEDHFRIENGYKNDAMVIYGDTDSVMVKFGVKDIEDAMKLGKEAADYVTSKF 693

Query: 1073 -KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
             K ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + +
Sbjct: 694  IKPIKLEFEKVYFPYLLINKKRYAGLYFTKPDK--YDKMDCKGLETVRRDNCPLVANMMN 751

Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
             CL  +L ER+    V+       +V  D+   ++ L + VITK LTK       A  Q 
Sbjct: 752  TCLQILLIERNPHAAVDYAK----QVISDLLCNRIDLSQLVITKELTKTDY----AAKQA 803

Query: 1192 HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMI 1251
            HV++A ++K+         GD V Y+       S+       Q+A  P  +        I
Sbjct: 804  HVELATKMKKRDAGNAPKLGDRVAYVF-----ISAAKGTPAYQKAEDP--VYALQNSIPI 856

Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERL 1280
            D +YY   Q+   + R+   I G   E L
Sbjct: 857  DTNYYLENQLAKPLVRIFEPILGDKAESL 885


>gi|401626408|gb|EJS44355.1| cdc2p [Saccharomyces arboricola H-6]
          Length = 1097

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 199/818 (24%), Positives = 361/818 (44%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW++++K  +S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLTKGKYSMIEENNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L++    + K D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSKWRDFIIKADPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKNVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKGTVERLDFKLDEDYVITPNGDF-FVTAKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T + VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKNAVQEKYCIKNGYTHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA   + +     ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAG--LFWTSPEKFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVKETI----NDILHNKVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|324120698|dbj|BAJ78740.1| DNA polymerase delta catalytic subunit [Mnais pruinosa pruinosa]
          Length = 1095

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 171/667 (25%), Positives = 308/667 (46%), Gaps = 99/667 (14%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            ER +L +    + ++D D+  G+NI+ FDL  LL+RA+   + +  ++ +GR+K  +S +
Sbjct: 364  EREMLEKWADFVREVDPDIFTGYNINNFDLPYLLNRAK--HLNAKNFNFLGRIKDIKSII 421

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDR 754
             +        G   +  + +   GR+  D  +    LLRE    SY+L  ++   L + +
Sbjct: 422  KEQIMQNKQMGRRENKSVNT--EGRVPFDLLMV---LLREYKLRSYTLNAVSYHFLGEQK 476

Query: 755  KEVGPHDVLKMFQTLESLME--LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            ++V  H ++   Q   S     L  Y   DA+L + L+  L  +    ++  ++G     
Sbjct: 477  EDVQ-HSIITDLQNGNSQTRRRLAVYCLKDAYLPLRLLEKLMCIINYMEMARVTGVPLSC 535

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
             L   +  +V   LL   + K +++P   TY           + G +D   E        
Sbjct: 536  LLTRGQQIKVVSQLLRKAKEKDFVIP---TY-----------SGGGQDEQFE-------- 573

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV- 931
                                G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT+ 
Sbjct: 574  --------------------GATVIEPLRGYYSDPIATLDFSSLYPSIMMAHNLCYTTLL 613

Query: 932  ---ERSPDGLVPH-----------LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
                +   GL P            +  S   G+LPE+L+NL+  R+  K  +K  +  L+
Sbjct: 614  QPGSKEKLGLSPEDYVQTPAGNYFVRQSVRKGLLPEILENLLSARKKAKDDLKEETDPLR 673

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--- 1033
             + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+      
Sbjct: 674  RKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRTMIEQTKQEVETKYCVA 733

Query: 1034 -----NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                 +  VIYGDTDS+M+  G+  + +A A+  +  + V+ K+ K ++++ + +Y   L
Sbjct: 734  RGYSHDAVVIYGDTDSVMVKFGVKSLEEAMALGREAAEYVSSKFVKPIKLEFEKVYFPYL 793

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA +     D   Y+ ++ KG++ VRRD   L   + + CL ++L ER  +  V
Sbjct: 794  LINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNCPLVANMMNTCLQKLLIERDPDGAV 851

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
                    +V  D+   ++ + + V+TK L K  + Y  A  Q HV++A+++++   +  
Sbjct: 852  AYAK----QVIADLLCNRIDISQLVVTKELAK--QDY--AAKQAHVELAIKMRKRDPAAA 903

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD VPY++         ++ G     +  D +   +    ID +YY   Q+   + R
Sbjct: 904  PKLGDRVPYVLI-------AAAKGTPAYMKAEDPIYVLENNIPIDSNYYLENQLSKPLLR 956

Query: 1268 LCASIEG 1274
            + + I G
Sbjct: 957  IFSPILG 963


>gi|409040940|gb|EKM50426.1| hypothetical protein PHACADRAFT_104509 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1068

 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 180/679 (26%), Positives = 300/679 (44%), Gaps = 100/679 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS VL  +S E  +LN     + ++D DV++G+NI+ FDL  L+ RA    V +  +  +
Sbjct: 324  GSQVLSFDS-EVDMLNAWRDFVNEIDPDVIIGYNIANFDLPYLIDRA--IAVKAKDFPML 380

Query: 690  GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            GR+      K +   T F S   G      + + GRL  D     +   +  SY+L  + 
Sbjct: 381  GRMIEV---KAQTKETHFSSKAFGQRDSKETALDGRLQIDILQYMQREHKLRSYTLNSVC 437

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H V+   Q    ES   L  Y   DA+L   LM  L       ++  
Sbjct: 438  AQFLGEQKEDVH-HSVITELQNGGPESRRRLAVYCLKDAYLPQRLMDKLMCFINYIEMAR 496

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   ++ +V   L      ++Y+VP                  G +++   
Sbjct: 497  VTGVPFNYLLSRGQSIKVLSQLFRKANEEEYVVP-------------ALRGEGTDEQ--- 540

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      Y G  V+EP KG Y   I  LDF SLYPSI+  +
Sbjct: 541  --------------------------YEGATVIEPHKGYYKAPIATLDFASLYPSIMMAH 574

Query: 925  NICFTT-----------VERSPDGL-VPH----LPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT           +E+  D +  P+      + +  G+LP +L++L+  R+  K  
Sbjct: 575  NLCYTTLLDKGTIDRLGLEKDVDYIQTPNNDFFATAKRRKGLLPIILEDLISTRKRAKAD 634

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +   K   LD +Q ALK++ANS+YG  G +  +    P++   T  GR+++  T  
Sbjct: 635  LKKETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSTTAFGRQMIEKTKQ 694

Query: 1028 LVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAI-AGKVIQEVNKKY-KCLEI 1077
             V+           + EVIYGDTDS+M+  G  D+     + A +  + V +K+ K +++
Sbjct: 695  EVEAEYCIANGHAHDAEVIYGDTDSVMVKFGPTDLETVMQLGASQAAEFVTQKFIKPIKL 754

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD--MVRRDWSLLSKEVGDFCLS 1135
            + + +Y   LL+ KK+YA +     D   Y+ ++ KG++   VRRD   L   V   CL+
Sbjct: 755  EFEKVYFPYLLISKKRYAGLYWTRPD--KYDKMDTKGIEARTVRRDNCRLVSTVISTCLN 812

Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
            ++L +R  +  +E       ++  D+   +V + + VITK L K       A  Q HV++
Sbjct: 813  KMLIDRDVDGAIEYTK----QIISDLLQNKVDMSQLVITKALAKADY----AGKQAHVEL 864

Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
            A R+KQ    +  + GD V Y+I          + G A   +  D +   +    ID  Y
Sbjct: 865  AERMKQRDAGSAPNVGDRVAYVII-------KGAKGAAAYEKSEDPIFVLENNMPIDTKY 917

Query: 1256 YASQQIHPVVSRLCASIEG 1274
            Y   Q+   + R+   I G
Sbjct: 918  YLENQLSNPLMRIFEPILG 936


>gi|392300015|gb|EIW11106.1| Pol3p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1097

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSHITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|151941901|gb|EDN60257.1| DNA polymerase III catalytic (delta) subunit [Saccharomyces
            cerevisiae YJM789]
          Length = 1097

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|254577417|ref|XP_002494695.1| ZYRO0A07524p [Zygosaccharomyces rouxii]
 gi|238937584|emb|CAR25762.1| ZYRO0A07524p [Zygosaccharomyces rouxii]
          Length = 1090

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 197/813 (24%), Positives = 349/813 (42%), Gaps = 141/813 (17%)

Query: 502  VKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++ K  +   P  +RVS C+ E+T++  K +    +    ++  P+ + + ++
Sbjct: 257  ISGMSWITLPKGEYQLVPEHERVSTCQLEVTINYRKLVS-HPAENEWSQASPLRILSFDI 315

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      +F + +    I  A+V+    AK           KP + + FTV         
Sbjct: 316  ECSGRPGIFPEPETDPVIQIANVMSVAGAK-----------KPFIRNVFTV--------- 355

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
                     D  S    + +   ++E  +L      +   D D+++G+N S FD   L++
Sbjct: 356  ---------DTCSPITGSQIYSHATEEEMLKHWRDFVVAADPDIIIGYNTSNFDFPYLIN 406

Query: 675  RAQVCRVPSSMWSKIGRL--KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
            RA+  +V S  +   GRL   + E+         +G+  S  I   I GRL  D     +
Sbjct: 407  RAKALKVES--FPYFGRLFNVKQEITSSVFSSKAYGTKESKNI--NIDGRLQLDLLQFIQ 462

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELM 790
               +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L + LM
Sbjct: 463  REYKLRSYTLNAVSAHFLGEQKEDVH-HSIITSLQKGDSETRRRLAVYCLKDAYLPLRLM 521

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
              L  L    ++  ++G  +   L   +  +V   L         ++P+         M 
Sbjct: 522  EKLMALVNYTEMARVTGVPFSYLLSRGQQIKVISQLFRKCLQIDTVIPN---------MQ 572

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             Q S+                                   Y G  V+EP +G YD  I  
Sbjct: 573  SQASDE---------------------------------QYEGATVIEPIRGYYDIPIAT 599

Query: 911  LDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT-TGVLP 952
            LDF+SLYPSI+  +N+C+T      TVE+           +P+G   +  +SK   G+LP
Sbjct: 600  LDFSSLYPSIMMAHNLCYTTLTSKSTVEKFNMKLDEDYIMTPNG--DYFVTSKVRRGILP 657

Query: 953  ELLKNLVQRRRMVKTWMKTAS-GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +L+ L+  R+  K  +K  +   +   L+ +Q ALK++ANS+YG  G +  +     ++
Sbjct: 658  TILEELIGARKRAKKDLKNETEPFRKDVLNGRQLALKVSANSVYGFTGATVGKLPCLAIS 717

Query: 1012 ELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
              +T  GR ++  T   V+   +++        V+YGDTDS+M+  G  D+ +A  +  +
Sbjct: 718  SSVTSFGRNMIMLTKQAVEEKYSIKNGFKHDSLVVYGDTDSVMVKFGTTDLKEAMKLGAE 777

Query: 1064 VIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
                V+  +K  + ++ +  Y   LL+ KK+YA +     D   Y+ I++KGL  VRRD 
Sbjct: 778  AAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KYDKIDQKGLASVRRDS 835

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   V +  L +IL ER+ E  +  +     ++ +D+   +  + K +I+KTL     
Sbjct: 836  CPLVSIVMNKVLKKILIERNVEGALGFVK----EIIDDILHNKADISKLIISKTLA---- 887

Query: 1183 AYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              P+  N QPH  +  R+K+     G + GD V Y++             +  RA  P  
Sbjct: 888  --PNYTNPQPHAVLTERMKKRD-GVGPNVGDRVDYVVIAGNDK-------LYNRAEDP-- 935

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            L   +    ID  YY + Q+   +  + A I G
Sbjct: 936  LYVLEHNMQIDSRYYLTNQLQNPIISIVAPILG 968


>gi|71406868|ref|XP_805939.1| DNA polymerase delta catalytic subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70869536|gb|EAN84088.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi]
          Length = 833

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 182/737 (24%), Positives = 330/737 (44%), Gaps = 113/737 (15%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            F+V   + G +WL+I   S C A +R S C+ E+   S + ++   +      + P  + 
Sbjct: 177  FIVDNDISGCNWLTIPVGSFCIATERTSTCQIELCC-SHEAVQNHDAVGQYLSIAPFRIL 235

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            +I++     K +F   +D + ++  +  C +      P           L+      K  
Sbjct: 236  SIDIECQGKKGLFPDPED-DPVIQIANHCINYGNEAEP-----------LTRTIFTLKSC 283

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
            G I               AG+ V   E+ E  LL  +   +  +D D+  G+NIS FD  
Sbjct: 284  GPI---------------AGARVCSYETEEEMLLEWVRF-VKAIDPDIFTGYNISNFDFP 327

Query: 671  VLLHRAQVCRVPSSM--WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
             LL+R    +   +   W +  ++    +P+ +K ++    G        + GR++ D  
Sbjct: 328  YLLNRGAALKTNDAFHYWGR--QINERTVPREKKFQSK-QMGNREYTELTLEGRVILDVM 384

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
            +  +   +  SYSL  +++  L + +++V  H ++   Q  + E+   L  Y   DA L 
Sbjct: 385  VVIQRDYKLRSYSLNAVSQHFLGEQKEDVH-HSIIADLQQGSEETRRRLAVYCLKDALLP 443

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            ++L+  L V+    ++  ++G      L+  +  +V  ++L   +AK  +VP        
Sbjct: 444  VKLLERLMVVVNNVEMARVTGVPIEWLLERGQQIKVFSMMLRKAKAKDLLVP-------- 495

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
               A + S  G + R                             Y G  V+EP KG Y+ 
Sbjct: 496  ---AVEYSGGGGDQR----------------------------GYEGATVIEPLKGFYNC 524

Query: 907  YILLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPHLPSSKT-------TGVLPE 953
             I+ LDF SLYPSII  +N+C++T      + R P  ++   P+  T        G+LPE
Sbjct: 525  PIVTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYPAEMLSRTPTGDTFVKKELFPGILPE 584

Query: 954  LLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            +L++L+  R+  K+ MK      L+ + L+ +Q ALK++ANS+YG  G    +     ++
Sbjct: 585  VLQDLLAARKRAKSLMKDVPMESLEYKVLNGRQLALKISANSVYGFTGAQVGKLPCLEVS 644

Query: 1012 ELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIHSGIDD-------IAKAKAIAGK 1063
              +T  GR ++  T  LV++    ++V+YGDTDS+MI    D+       +  A      
Sbjct: 645  SSVTAYGRLMIDQTKFLVESLYPGVKVVYGDTDSVMIKCLTDEKGTEKERLEYAMTFGKG 704

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
              +EV+  +   ++++ + +Y   LL+ KK+YA   + + +   Y+ ++ KG++ VRRD 
Sbjct: 705  AAEEVSSHFLNPIKLEFEKVYFPYLLMNKKRYAG--LLWTNTERYDKLDAKGIETVRRDN 762

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   V    L++IL +RS +  VE +  ++     D+   ++ +   VITKT +K   
Sbjct: 763  CPLVASVISGVLNRILIQRSVDSAVEFVKGTI----RDLLLNRLDISHLVITKTFSKAEN 818

Query: 1183 AYPDAKNQPHVQVALRL 1199
             Y  A  Q HV +  R+
Sbjct: 819  EYAGA--QAHVALVERM 833


>gi|1199547|emb|CAA64911.1| CDC2 [Saccharomyces cerevisiae]
 gi|1431142|emb|CAA98669.1| CDC2 [Saccharomyces cerevisiae]
          Length = 1097

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|323355835|gb|EGA87648.1| Pol3p [Saccharomyces cerevisiae VL3]
          Length = 1097

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|330443503|ref|NP_010181.2| Pol3p [Saccharomyces cerevisiae S288c]
 gi|341940645|sp|P15436.4|DPOD_YEAST RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=DNA polymerase III
 gi|4191|emb|CAA43922.1| DNA polymerase III catalytic subunit [Saccharomyces cerevisiae]
 gi|329138870|tpg|DAA11758.2| TPA: Pol3p [Saccharomyces cerevisiae S288c]
          Length = 1097

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|365766444|gb|EHN07940.1| Pol3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1097

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSXITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLNEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|341582140|ref|YP_004762632.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus sp. 4557]
 gi|340809798|gb|AEK72955.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus sp. 4557]
          Length = 775

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 173/648 (26%), Positives = 291/648 (44%), Gaps = 97/648 (14%)

Query: 638  SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
            S+E+ ++ R +  + + D DVL+ +N   FD   L  R +   +  ++    GR      
Sbjct: 185  STEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGIKFTL----GR--DGSE 238

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            PK+++    F           + GR+  D +   R  +   +Y+L  + +    K +++V
Sbjct: 239  PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290

Query: 758  GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
             P ++ + ++T E L  +  Y   DA ++ EL       P+  QL+ + G +LW  + + 
Sbjct: 291  YPEEITRAWETGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +    VE+ LL     +  + P+K     E ++A++R                       
Sbjct: 348  STGNLVEWFLLRKAYERNELAPNK---PDERELARRRG---------------------- 382

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
                          YAGG V EP++GL+D  I+ LDF SLYPSII  +N+   T+ R   
Sbjct: 383  -------------GYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQAL 987
                 +P   V H       G +P LL +L+ +R+++ K    T   L+ + LD +Q+A+
Sbjct: 429  KEYDTAPQ--VGHRFCKDFPGFIPSLLGSLLDERQKIKKKMKTTIDPLEKKLLDYRQRAI 486

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG   ++ +R+Y K  AE +T  GR+ +   +  ++     +V+Y DTD   +
Sbjct: 487  KILANSYYGYYAYARARWYCKECAESVTAWGRDYIEMVIRELEEKFGFKVLYADTDG--L 544

Query: 1048 HSGID--DIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG 1104
            H+ I   D    +  A   ++ +N K    LE++ +G Y R   + KKKYA +  + K  
Sbjct: 545  HATIPGMDAETVRKKAMVFLKYINAKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGK-- 602

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                 I  +GL++VRRDWS ++KE     L  IL     E+ V  + +    V E +   
Sbjct: 603  -----ITTRGLEIVRRDWSEIAKETQARVLEAILRHGDVEEAVRIVKD----VTEKLSRY 653

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
            +V  EK VI + +T+  + Y      PHV +A RL   G       G  + YI+    G 
Sbjct: 654  EVPPEKLVIHEQITRELKDY--KATGPHVAIAKRLAARG--IKIRPGTVISYIVLKGSGR 709

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
                   I  RA   DE      ++  D +YY   Q+ P V R+  + 
Sbjct: 710  -------IGDRAIPFDEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748


>gi|336259478|ref|XP_003344540.1| hypothetical protein SMAC_07548 [Sordaria macrospora k-hell]
 gi|380093254|emb|CCC08912.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1071

 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 174/658 (26%), Positives = 293/658 (44%), Gaps = 132/658 (20%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSG 710
            L ++D D+++G+NI+ FD                             PK    R    + 
Sbjct: 381  LEQVDPDIIIGYNIANFDF----------------------------PKQMGNRDTKATN 412

Query: 711  ASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
             +        GRL  D   L  RD  LR  SY+L  +    L + +++V    + ++F+ 
Sbjct: 413  TN--------GRLQLDMLQLVQRDYQLR--SYTLNAVCSNFLGEQKEDVHHSMITELFEG 462

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL-- 825
            T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  AR Q+V++L  
Sbjct: 463  TPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFLSQ 520

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L      +K ++P                       N+   ++E+               
Sbjct: 521  LFRKALEQKLVIP-----------------------NLRPESSEEQ-------------- 543

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER------ 933
                 Y G  V+EP +G YD  I  LDF SLYPSI+Q +N+C+TT      +ER      
Sbjct: 544  -----YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWNLKKD 598

Query: 934  -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
                 +P+G +  + + +  G+L ++L+ L+  R+  K  +       K   L+ +Q AL
Sbjct: 599  EDYIVTPNGDM-FVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVLNGRQLAL 657

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIY 1039
            K++ANS+YG  G +N +     +A  +T  GR+++  T   V+    +        +VIY
Sbjct: 658  KVSANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDAQVIY 717

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M+  G  D+A+A  +     + V+ K+ K ++++ + +Y   LL+ KK+YA   
Sbjct: 718  GDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFVKPIKLEFEKVYFPYLLINKKRYAG-- 775

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            + +     Y+ ++ KG++ VRRD  LL + V +  L  IL ++        + +++    
Sbjct: 776  LYWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAEAYVKDTIA--- 832

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+   ++ + K VITK LTK  E Y DAK Q HV++A R+K+    +    GD V Y++
Sbjct: 833  -DLLQNKIDMSKLVITKALTK--ENY-DAK-QAHVELAQRMKKRDAGSAPGLGDRVAYVM 887

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
                      + G     R  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 888  V-------KGAAGSKNFERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILGET 938


>gi|259145143|emb|CAY78407.1| Pol3p [Saccharomyces cerevisiae EC1118]
          Length = 1097

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLNEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|115387887|ref|XP_001211449.1| DNA polymerase delta catalytic subunit [Aspergillus terreus NIH2624]
 gi|114195533|gb|EAU37233.1| DNA polymerase delta catalytic subunit [Aspergillus terreus NIH2624]
          Length = 1104

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 178/663 (26%), Positives = 301/663 (45%), Gaps = 113/663 (17%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQ---VCRVPSSMWSKIGRLKRSEMPKLRKGRTIF 707
            L K+D DV++G+NI+ FD   LL RA+     R P   W+++       +P   K  T F
Sbjct: 382  LEKVDPDVIIGYNIANFDFPYLLDRAKHLKCGRFP--FWTRL-----KSIPSQAK-ETSF 433

Query: 708  GS---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDV 762
             S   G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    +
Sbjct: 434  SSKQMGNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTLNSVSYEFLGEQKEDVHHTMI 491

Query: 763  LKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
             ++   T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+
Sbjct: 492  TELHNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQ 549

Query: 822  VEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            V+++  L      ++ ++P                             N+ +N + D   
Sbjct: 550  VKFISQLFRKALEQQLVIP-----------------------------NQKSNDEQD--- 577

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER 933
                       Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT      VE+
Sbjct: 578  -----------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVEK 626

Query: 934  -----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
                       +P+G +    +    G+L ++L+ L+  R+  K  +   +   K   L+
Sbjct: 627  LNLKKDEDYIVTPNGHM-FCTTKVRKGLLSQILEELLTARKKAKKDLAIETDPFKKAVLN 685

Query: 982  IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL------ 1035
             +Q ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +      
Sbjct: 686  GRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIANGYSH 745

Query: 1036 --EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKK 1092
              +VIYGDTDS+M+  G+  + +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK
Sbjct: 746  DAKVIYGDTDSVMVKFGVSTLEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKK 805

Query: 1093 KYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
            +YA +     D   Y+ ++ KG++ VRRD  LL + V +  L +IL +R  +   E +  
Sbjct: 806  RYAGLYWTKTD--KYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDIDGAQEYVKE 863

Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK-NQPHVQVALRLKQSGYSTGCSAG 1211
            ++     D+   ++ + K VITK L+K      D K  Q HV++A R+K+    +  + G
Sbjct: 864  TI----SDLLQNKIDMSKLVITKALSK-----DDYKAKQAHVELAERMKKRDAGSAPTLG 914

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCAS 1271
            D V Y++    G       G     R  D +   +    ID  YY   Q+   + R+   
Sbjct: 915  DRVAYVMIKGAG-------GSKNYERSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEP 967

Query: 1272 IEG 1274
            I G
Sbjct: 968  ILG 970


>gi|406862660|gb|EKD15710.1| DNA polymerase family B [Marssonina brunnea f. sp. 'multigermtubi'
            MB_m1]
          Length = 1103

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 207/840 (24%), Positives = 360/840 (42%), Gaps = 138/840 (16%)

Query: 478  KGENFCSLLGTHSSALEL-FLVKRKVKGPSWLSIS--KFSSCPAPQRVSWCKYEITVDSP 534
            KG     +L   S A  L F++  K+ G SW+ ++   ++  P  +R S C+ E  V S 
Sbjct: 229  KGSGDGGILTFDSIAYVLRFMIDCKILGMSWVEVAAENYTMIPHNERHSNCQIEAHV-SY 287

Query: 535  KDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPM 589
            +D+         A++ P+ + + ++     K +F +      I  A+VV  +  K     
Sbjct: 288  RDLIAHKPEGEWAKMAPLRILSFDIECAGRKGIFPEANYDPVIQIANVVTRYGEK----- 342

Query: 590  LASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMI 649
                  KP + + F +                  D  S   +  L   SSE  +L +   
Sbjct: 343  ------KPFVRNVFCL------------------DNTSPIVNTQLFEFSSEEKMLTKWRD 378

Query: 650  ELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFG 708
             + ++D D+++G+NI  FD   LL RA+  +V     W+++   + +         T F 
Sbjct: 379  FMEEVDPDIIIGYNICNFDFPYLLDRAKHLKVKDFDKWTRLNSARSAAK------ETNFS 432

Query: 709  S---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            S   G      +   GRL  D     +   +  SY+L  +    L + +++V    + ++
Sbjct: 433  SKQMGNRDTKATNTNGRLQLDLLQLVQRDHQLRSYTLNSVCAQFLGEQKEDVHHTMITEL 492

Query: 766  FQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            F  T ES   L  Y   DA+L   LM  LS L    +++ ++G  +   L  +R Q+V++
Sbjct: 493  FNGTPESRRRLAVYCLKDAYLPQRLMDKLSCLENYTEMSRVTGVPFNYLL--SRGQQVKF 550

Query: 825  L--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            +  L      +K ++P                                 N   D S    
Sbjct: 551  VSQLFRKALEQKLVIP---------------------------------NLRTDASDEQ- 576

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GL 938
                    Y G  V+EP +G YD  I  LDF SLYPSIIQ +N+C+TT+         GL
Sbjct: 577  --------YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKASVEKLGL 628

Query: 939  VP------------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
            V                + +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 629  VKDEDYIVTPNNDMFCTTKQRKGLLTQILEELLTARKQAKRELAVETDPFKKAVLNGRQL 688

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +  +     +A   T  GR+++  T + V+    +        +V
Sbjct: 689  ALKISANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKEEVEKKYTIANGYSHDAQV 748

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G  ++ +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 749  IYGDTDSVMVKFGCKELVEAMKLGEEAAAYVSSKFIKPIKLEFEKVYYPYLLINKKRYAG 808

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
            +     D   Y+ ++ KG++ VRRD   L + V +  L  IL +R  +   + + +++  
Sbjct: 809  LYWTNPD--KYDKMDTKGIETVRRDNCRLVQNVIETVLRMILIDRDVQGAQDYVKDTI-- 864

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK L K   A   AK Q HV++A R+K+    +  + GD V Y
Sbjct: 865  --SDLLQNKIDMSKLVITKALAK---ADYTAK-QAHVELAERMKKRDAGSAPTLGDRVAY 918

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            +I          + G     R  D +   +    +D  YY   Q+   + R+   I G +
Sbjct: 919  VII-------KGAAGAKNFERSEDPIFVLENNIPVDTKYYLDNQLAKPLGRIFEPILGET 971


>gi|18313103|ref|NP_559770.1| DNA polymerase II [Pyrobaculum aerophilum str. IM2]
 gi|18160611|gb|AAL63952.1| DNA-directed DNA polymerase (B3) [Pyrobaculum aerophilum str. IM2]
          Length = 785

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 173/650 (26%), Positives = 301/650 (46%), Gaps = 112/650 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R++L   +  + + D DV+VG+N + FD   L  RA+   +P     K+ R+  +    
Sbjct: 211  DRSVLRSFIDFVREFDPDVIVGYNSNQFDWPYLAERARALGIPL----KVDRVGGAPQ-- 264

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKE 756
                ++++G  +       + GR   D +    +       +L ++A+       ++R  
Sbjct: 265  ----QSVYGHWS-------VTGRANVDLYNIVDEFPEIKLKTLDRVAEYFGVMKREERVL 313

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            V  H + + ++       L +Y   D   +  L   L  LP   QL+++SG    +    
Sbjct: 314  VPGHKIYEYWRDQGKRPLLRQYVIDDVKSTYGLAEKL--LPFLIQLSSVSGLPLDQVAAA 371

Query: 817  ARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
            +   RVE++LL +A+R  + + P++                  E+R  E           
Sbjct: 372  SVGNRVEWMLLRYAYRLGE-VAPNR------------------EEREYE----------- 401

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF-TTVERS 934
                           Y G +VLEP+ GLY   +L LDF+S+YP+I+ +YN+   T +ER 
Sbjct: 402  --------------PYKGAIVLEPRPGLYSD-VLALDFSSMYPNIMMKYNLSPDTYLERG 446

Query: 935  ----PDGL-----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQ 983
                P G+     V H    +  G +P +L+ L++ R+ V+  +K       + + LD +
Sbjct: 447  EPDPPGGVYVAPEVGHRFRREPPGFIPLVLRQLIELRKRVREELKKYPPDSPEYRVLDER 506

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+ALK+ AN+MYG  G+  +R+Y K +AE +T   R IL+  ++  +    + VIYGDTD
Sbjct: 507  QRALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIEYARKA-GIVVIYGDTD 565

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFK 1102
            S+ +    D          K+++ V +KY  ++I +D  Y  +L  + KK+YA +    +
Sbjct: 566  SLFVKKSGD--------VEKLVKYVEEKY-GIDIKIDKDYSTVLFTEAKKRYAGL---LR 613

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG     I+  G ++VR DWS L+KEV    +  IL+ R   +  + +   +  V + +R
Sbjct: 614  DGR----IDIVGFEVVRGDWSELAKEVQLRVIELILTSRDVSEARQKVVKYVRGVIDKLR 669

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
            + +V L+  +I KTL K  + Y      PHV  A+ LK+ GY  G   G T+ Y++    
Sbjct: 670  NYEVDLDDLIIWKTLDKELDEY--KAYPPHVHAAILLKKRGYKVG--KGTTIGYVVVKGG 725

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
               S  +V         D+++K      ID+DYY  +Q+ P   R+   I
Sbjct: 726  EKVSERAVPYI----FIDDIEK------IDLDYYVERQVIPAALRIAEVI 765


>gi|259090299|pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
          Length = 919

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 192  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 250

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 251  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 296

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 297  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 341

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 342  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 397

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 398  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 456

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 457  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 499

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 500  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 534

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 535  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 593

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 594  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 653

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 654  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 713

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 714  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 771

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 772  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 827

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 828  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 873

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 874  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 909


>gi|324120716|dbj|BAJ78749.1| DNA polymerase delta catalytic subunit [Teleogryllus emma]
          Length = 1089

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 175/678 (25%), Positives = 306/678 (45%), Gaps = 109/678 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER +L +    + ++D D+  G+NI+ FD   LL R++   + +  +  +GR+K  ++  
Sbjct: 362  ERDMLEKWADFVREVDPDLFTGYNINNFDFPYLLDRSK--HLNAKNFHFLGRIK--DIKS 417

Query: 700  LRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
            + K + +     G        + GR+L D  L      +  SY+L  ++   L + +++V
Sbjct: 418  VVKEQILQSKQMGRRENKSVNMEGRVLFDLLLVLVRDYKLRSYTLNAVSFHFLQEQKEDV 477

Query: 758  GPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
              H+++   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G      L 
Sbjct: 478  H-HNIISDLQHGDPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVPLSCLLT 536

Query: 816  GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
              +  +V   LL   + K Y++P   + V+E +                           
Sbjct: 537  RGQQIKVVSQLLRTAKPKGYLMPAYSSGVQEEQ--------------------------- 569

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---- 931
                           Y G  V+EPKKG Y   I  LDF+SLYPSI+  +N+C+TT+    
Sbjct: 570  ---------------YEGATVIEPKKGYYSDPITTLDFSSLYPSIMMAHNLCYTTLLPSG 614

Query: 932  ------------ERSPDG-LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKI 977
                         ++P G      P  K  G+LPE+L+NL+  R+  K  +K  +   K 
Sbjct: 615  MKEKLSLTQDQFTKTPAGNFFVKAPVRK--GLLPEILENLLGARKRAKADLKKETDPFKQ 672

Query: 978  QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
            + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+++ N+  
Sbjct: 673  KVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVESHFNVSN 732

Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLL 1088
                   VIYGDTDS+M+  G+  + +A  +  +  + V +K+ K ++++ + +Y   LL
Sbjct: 733  GYQNDAVVIYGDTDSVMVKFGVKTLEEAMELGREAAEFVTEKFVKPIKLEFEKVYYPYLL 792

Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
            + KK+YA +     D   Y+ ++ KG++ VRRD S L   + + CL ++L +R  +  +E
Sbjct: 793  INKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNSPLVANMMNTCLQKLLIDRDPQGAME 850

Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
                   +V  D+   ++ + + VITK LTK       A  Q HV +A ++K+    T  
Sbjct: 851  YAK----QVISDLLCNRIDISQLVITKELTKSDY----AAKQAHVTLAEKMKKRDAGTAP 902

Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------IDIDYYASQQIH 1262
              GD VPY++             IA     P  +K  D  ++      ID  YY   Q+ 
Sbjct: 903  KLGDRVPYVL-------------IAAAKNTPAYMKAEDPIYVLENNIPIDSTYYLENQLS 949

Query: 1263 PVVSRLCASIEGTSPERL 1280
              + R+   I G   E L
Sbjct: 950  KPLLRIFEPILGDKAESL 967


>gi|119482197|ref|XP_001261127.1| DNA polymerase delta large chain [Neosartorya fischeri NRRL 181]
 gi|119409281|gb|EAW19230.1| DNA polymerase delta large chain [Neosartorya fischeri NRRL 181]
          Length = 1105

 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 174/659 (26%), Positives = 302/659 (45%), Gaps = 105/659 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L K+D DV++G+NI+ FD   LL RA+  +      W+++  +        +   T F S
Sbjct: 383  LEKVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTRLKGMAS------QATSTNFSS 436

Query: 710  ---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLK 764
               G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    + +
Sbjct: 437  KQMGNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTLNSVSYEFLKEQKEDVHHTMITE 494

Query: 765  MFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
            +F  T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+
Sbjct: 495  LFNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVK 552

Query: 824  YL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            +L  L      ++ ++P                       N++    +D           
Sbjct: 553  FLSQLFRKALEQQLVIP-----------------------NMKSTDEQD----------- 578

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT----------- 930
                     Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT           
Sbjct: 579  ---------YEGATVIEPSRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVEKLK 629

Query: 931  VERSPDGLV-PHLPSSKTT----GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQ 984
            +++  D +V P+     TT    G+L ++L+ L+  R+  K  +   +   K   L+ +Q
Sbjct: 630  LKKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLAARKRAKKELAVETDPFKKAVLNGRQ 689

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------E 1036
             ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +
Sbjct: 690  LALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAK 749

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYA 1095
            VIYGDTDS+M+  G+ ++ +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA
Sbjct: 750  VIYGDTDSVMVKFGVTELEEAMKLGQEAADYVSSKFLKPIKLEFEKVYFPYLLINKKRYA 809

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
               + + +   ++ ++ KG++ VRRD  LL + V +  L +IL ER  +   + +  ++ 
Sbjct: 810  G--LYWTNPNKFDKMDTKGIETVRRDNCLLVQNVIETVLHKILIERDIDGAQDYVKETI- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
                D+   ++ + K VITK L+K   A   AK Q HV++A R+++    +  + GD V 
Sbjct: 867  ---SDLLQNKIDMSKLVITKALSK---ADYTAK-QAHVELAERMRKRDAGSAPTLGDRVA 919

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I    G       G     +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 920  YVIVKGAG-------GSKNYEKSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|951001|emb|CAA61282.1| DNA-directed DNA polymerase III [Candida albicans]
          Length = 1038

 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 230/979 (23%), Positives = 415/979 (42%), Gaps = 168/979 (17%)

Query: 335  LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
            + F  LDA E     N    + FG  + G  H   C V   +      +P G        
Sbjct: 61   ISFQQLDAEEYHDRGNTYARF-FGITQEG--HSVLCNVTGFIHYFYCPVPKG-------- 109

Query: 395  MKLEKDAEESRISPMAFRKKLQDVALGL-KTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
               E++  E       F   L+    G+ + EI ++      SN I +P  + +A     
Sbjct: 110  --FEENLTE-------FTNYLKATFDGIERVEITSKESIWGYSNNIKTPFFKIFA----- 155

Query: 454  IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
                +N + KI   F++  +P      + C      +  L L ++  K+ G SW+++ + 
Sbjct: 156  ----KNNISKIRSAFQNGQVP----NIDPCITYDNINYLLRL-MIDCKITGMSWITLPRD 206

Query: 514  SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQD 568
                   ++S C+ E ++D  +D+          ++ P+ + + ++     K VF + + 
Sbjct: 207  KYKIVNNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRILSFDIECAGRKGVFPEAEH 265

Query: 569  VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
               I  A+VV             S   KP + + FTV                    +S 
Sbjct: 266  DPVIQIANVV-----------QKSGESKPFVRNVFTV-----------------NTCSSI 297

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS +   +  E  L++     + K+D DV++G+N + FD+  +L+RA+   +  + +  
Sbjct: 298  IGSQIFEHQREEDMLMHWKEF-ITKVDPDVIIGYNTANFDIPYVLNRAKALGL--NDFPF 354

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
             GRLKR    K      +F S   G     +  I GR+  D     +   +  SY+L  +
Sbjct: 355  FGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYTLNSV 411

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
            +   L + +++V  H ++   Q  T E+   L  Y   DA+L + L+  L  L    ++ 
Sbjct: 412  SAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFLPLRLLDKLMCLVNYTEMA 470

Query: 804  NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
             ++G  +   L  +R Q+++ ++   FR                K  +       ED  +
Sbjct: 471  RVTGVPFSYLL--SRGQQIK-VISQLFR----------------KCLQ-------EDIVI 504

Query: 864  EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
              L +E +N                  Y G  V+EP++G YD  I  LDF+SLYPSI+  
Sbjct: 505  PNLKSEGSN----------------EEYEGATVIEPERGYYDVPIATLDFSSLYPSIMMA 548

Query: 924  YNICFTTV----------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
            +N+C+TT+                 ++P+G    + S+   G+LP +L  L+  R+  K 
Sbjct: 549  HNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDY-FVHSNLRKGILPTILDELLTARKKAKA 607

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  GRE++  T 
Sbjct: 608  DLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTK 667

Query: 1027 DLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEI 1077
            + VQ        +  + +VIYGDTDS+M+  G  D+     +  +    V+ K+K  +++
Sbjct: 668  NEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKL 727

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD   L + V    L  I
Sbjct: 728  EFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVRRDNCQLVQNVITKVLEFI 785

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ER        +  ++     D+   ++ L + VITK  +K    +  +  Q HV++A 
Sbjct: 786  LEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK----HDYSAKQAHVELAE 837

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            R+++    +  + GD V Y+I          + G     +  D L   +    ID+ YY 
Sbjct: 838  RMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSEDPLYVLENSLPIDVKYYL 889

Query: 1258 SQQIHPVVSRLCASIEGTS 1276
             QQ+   + R+   I G +
Sbjct: 890  DQQLTKPLERIFIPILGET 908


>gi|256274101|gb|EEU09012.1| Pol3p [Saccharomyces cerevisiae JAY291]
          Length = 1097

 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++   K+S      RVS C+ E++++  +++    +    +   P+ 
Sbjct: 258  LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSYTAPLR 316

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +    I  A+VV    AK           KP + + FT+   
Sbjct: 317  IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           +  S    +++   ++E  +L+     + K+D DV++G+N + FD
Sbjct: 363  ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  LL+RA+  +V    +   GRLK  + E+ +       +G+  +  +   I GRL  D
Sbjct: 408  IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 464  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + LM  L  L    ++  ++G  +   L  AR Q+++            +V   F   
Sbjct: 523  LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                            R   E+     N  +  S +          Y G  V+EP +G Y
Sbjct: 566  ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G    + + + 
Sbjct: 601  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659

Query: 948  TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+LP +L  L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  +  
Sbjct: 660  RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
               ++  +T  GR ++  T   VQ    ++        V+YGDTDS+M+  G  D+ +A 
Sbjct: 720  CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779

Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +  + V+  +K  + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  
Sbjct: 780  DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L   V +  L +IL ER+ +  +  +  ++     D+   +V + K +I+KTL
Sbjct: 838  VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893

Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
                   P+  N QPH  +A R+K+     G + GD V Y+I        G +  +  RA
Sbjct: 894  A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              P  L   +    +D  YY + Q+   +  + A I G
Sbjct: 940  EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975


>gi|440635761|gb|ELR05680.1| DNA polymerase delta subunit 1 [Geomyces destructans 20631-21]
          Length = 1102

 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 166/659 (25%), Positives = 292/659 (44%), Gaps = 94/659 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L  +D D+++G+NIS FD   LL RA+  ++     WS++  +K          + +   
Sbjct: 379  LEMVDPDIIIGYNISNFDFPYLLDRAKHLKIGGFDYWSRLHSIKSVAKESNFSSKQM--- 435

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-T 768
            G      +   GRL  D     +   +  SY+L  ++   L + +++V    + ++F  T
Sbjct: 436  GNRDTKATNTNGRLQLDLLQLVQRDHQLRSYTLNSVSAQFLGEQKEDVHHTMITELFNGT 495

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--L 826
             ES   L  Y   DA+L   L+  LS L    ++  ++G  +   L  +R Q+V+++  L
Sbjct: 496  PESRRRLAVYCLKDAYLPQRLLEKLSCLENYTEMARVTGVPFNFLL--SRGQQVKFVSQL 553

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
                  +K ++P++                                          R   
Sbjct: 554  FRKALEQKLVIPNQ------------------------------------------RTEA 571

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSP 935
             G  Y G  V+EP +G YD  I  LDF SLYPSIIQ +N+C+TT           +++  
Sbjct: 572  SGEQYEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKASVDKLGLKKDE 631

Query: 936  DGLVP-----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKL 989
            D +V         + +  G+L ++L  L+  R+  K  +   +   K   L+ +Q ALK+
Sbjct: 632  DYIVTPNGDMFCTAKQRKGLLTQILDELLTARKQAKRELAVETDPFKKAVLNGRQLALKI 691

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGD 1041
            +ANS+YG  G +  +     +A   T  GR+++  T   V+    +        +VIYGD
Sbjct: 692  SANSVYGLTGATVGKLPCLEIAGSTTSYGRQMIEKTKAEVEAKYTIANGYAHDAQVIYGD 751

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M+  G  D+A++  +  +  Q V+ K+ K ++++ + +Y   LL+ KK+YA +   
Sbjct: 752  TDSVMVKFGTKDLAESMKLGEEAAQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 811

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              D   Y+ ++ KG++ VRRD   L +   +  L  IL ++  +   + + +++     D
Sbjct: 812  NPD--KYDKMDTKGIETVRRDNCRLVQTTIETVLRMILIDQDVQGAQDYVKDTI----SD 865

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +   +V + K VITK L K       A  Q HV++A R+++    +  + GD V Y+I  
Sbjct: 866  LLQNKVDMAKLVITKALAKADY----ANKQAHVELAERMRKRDAGSAPTLGDRVAYVII- 920

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
                    + G     R  D L   +    ID  YY   Q+   + R+   + G +  R
Sbjct: 921  ------KGAAGAKNFERSEDPLYVLEHNVPIDTKYYLDNQLAKPLGRIFEPMLGETRAR 973


>gi|390339587|ref|XP_003725042.1| PREDICTED: DNA polymerase delta catalytic subunit-like
            [Strongylocentrotus purpuratus]
          Length = 1696

 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 165/618 (26%), Positives = 289/618 (46%), Gaps = 88/618 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V+  ++ E  +L      + ++D D+L G+NI  FD+  L++RA   R+  S +  
Sbjct: 958  VGSQVMSFKT-EHEMLQAWADFVREIDPDILTGYNIQNFDIPYLINRAAALRL--SRFPF 1014

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQ 744
            +GRLK  +S +  +       G   +  +   + GR+  D   +  RD  LR  SY L  
Sbjct: 1015 LGRLKNTKSVIRDVSFQSKQLGKRENKSVN--MEGRVQFDLLQVVVRDYKLR--SYRLNA 1070

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H ++   Q    ++   L  Y   DA L + L+  L  +    ++
Sbjct: 1071 VSYHFLQEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAMLPLRLLDKLMSVINYMEM 1129

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   LL   + +  ++P                 H VE   
Sbjct: 1130 ARVTGVPLTYLLSRGQQIKVVSQLLRKAKEQDLVMP----------------AHKVET-- 1171

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                                     G  + GG VL+P +G YD  I  LDF+SLYPSI+Q
Sbjct: 1172 -------------------------GDDFVGGYVLDPIRGYYDCPIATLDFSSLYPSIMQ 1206

Query: 923  EYNICFTTV-------ERSPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
             +N+C+TT+         +PD  +        +  S   G+LPE+L++L+  R+  K  +
Sbjct: 1207 AHNLCYTTLLSPSMKENLAPDQYIKTPTGNYFVKKSIRRGILPEILEDLLTARKRAKADL 1266

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K  +  L+ + LD +Q ALK++ANS+YG  G    +     +++  T  GR ++  T  L
Sbjct: 1267 KKETDPLRKRVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSTTAFGRMMIDKTRQL 1326

Query: 1029 VQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+    +E        VIYGDTDS+M+  G+  +A++  +  +    ++ ++   ++++ 
Sbjct: 1327 VETRYTVENGYKTTSKVIYGDTDSVMVKFGVKTVAESMELGKEAAAWISDEFPPPIKLEF 1386

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   V +  L +IL 
Sbjct: 1387 EKVYFPYLLINKKRYAGLYFTKPDT--YDKMDCKGIETVRRDSCPLVSNVLNNVLQKILI 1444

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            ER     ++    ++     D+   ++ + + VITK LTK  E Y  A  Q HV++A R+
Sbjct: 1445 ERDPTGALDHTKQTI----SDLLCNRIDISQLVITKELTKTGEEY--AGRQAHVELAARM 1498

Query: 1200 KQSGYSTGCSAGDTVPYI 1217
            K+    +  + GD VPY+
Sbjct: 1499 KKRDPGSAPTLGDRVPYV 1516


>gi|281210761|gb|EFA84927.1| DNA polymerase delta catalytic subunit [Polysphondylium pallidum
            PN500]
          Length = 1999

 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 204/814 (25%), Positives = 355/814 (43%), Gaps = 144/814 (17%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            FL+ +++ G SW+ +   S   +   +S C+ EI   S + + V   +    ++ P    
Sbjct: 768  FLIDKQIPGCSWIELPANSYRKSETSLSTCQIEIDT-SVETLTVHQIAPGWDDIAPF--- 823

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
                            I+S  + C  +  +       E KK  ++    VV K+ G    
Sbjct: 824  ---------------RILSFDIECAGRKGV-----FPEPKKDPVIQIANVV-KIQG---- 858

Query: 616  MGFNKEATDRN--------SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGF 667
                KE   RN        S  G++V+  E+ E  LL      + K+D D+++G+NI+ F
Sbjct: 859  ---EKEPVIRNVFTLKSCSSIVGAHVISYEN-EAQLLKEWKKFITKIDPDIIIGYNIANF 914

Query: 668  DLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLL 724
            DL  L+ RA+  ++    ++ +GR+K + + K++  R  F S   G        + GR  
Sbjct: 915  DLPYLIERARALKI--GEFAYLGRIK-TTISKIKDSR--FSSQNLGTRESKEISMPGRTQ 969

Query: 725  CDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETD 782
             D     +   +  SYSL  ++   L K++KE     ++   Q  T +    L  Y   D
Sbjct: 970  FDIMQAIQRDHKLSSYSLNNVSAHFL-KEQKEDVHFSIITDLQNGTDDDRRRLAVYCLKD 1028

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
            A L ++L+  L ++    ++  ++G      L    + +V   L      +  I+P +  
Sbjct: 1029 AMLPLKLLDKLMLIINYSEMARVTGVPMSYLLGRGESIKVLSQLYRKAMLEDLILPTQ-- 1086

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                                    +   +G  + G +V+EP  G
Sbjct: 1087 ----------------------------------------KVTGKGDKFKGAVVIEPTPG 1106

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTT 948
             YD  I  LDF SLYPSI+  +N+C++T+                +P G    LP+ K  
Sbjct: 1107 FYDTPIATLDFTSLYPSIMMAHNLCYSTLITQDYIKTLPNTEYTVTPSGDAFILPNIK-K 1165

Query: 949  GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
            G+LP +L+ L+  R+  K  +K  +   K   LD +Q ALK++ANS+Y   GF+ +R   
Sbjct: 1166 GLLPRILEELLTARKKAKEELKVETDPFKKAVLDGRQLALKISANSVY---GFTGARVGK 1222

Query: 1008 KPLAEL---ITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAK 1056
             P  E+   +T  GRE+L  T D V+    +        ++IYGDTDS+M+  G+  + +
Sbjct: 1223 LPCIEISRSVTAFGREMLYKTRDFVEAKYTIANGYSHDAKIIYGDTDSVMVKFGVSTVEE 1282

Query: 1057 AKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGL 1115
            A  +     +EV K + + + +D + +Y   LL+ KKKYA +     D   ++ ++ KGL
Sbjct: 1283 AMDLGRHASKEVTKIFIRPINLDFEKVYYPYLLMAKKKYAGLFWTKPDK--FDKMDVKGL 1340

Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
            + +RRD  LL + V    L  IL ++  +   E   +    V  D+   ++ L   VITK
Sbjct: 1341 ENIRRDTCLLVRNVVSNILKMILIDKDIKKAEEYTKS----VISDLLQNRLDLSMLVITK 1396

Query: 1176 TLTKPPEAYPDAKNQP-HVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
             L+K      + K +  H ++A +++    +T  + GD VPY+I   QG  +     I +
Sbjct: 1397 ALSK-----SEYKGRVIHNELAQKMRARNPATAPNLGDRVPYVIT--QGIKNAP---IYE 1446

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            +A   D L   +   ++D  YY  +Q+   + R+
Sbjct: 1447 KAE--DPLYVLEKNLLLDTKYYCDKQLKAPLLRI 1478


>gi|13124716|sp|P46588.2|DPOD_CANAL RecName: Full=DNA polymerase delta catalytic subunit; AltName:
            Full=DNA polymerase III
 gi|3850149|emb|CAA21949.1| DNA polymerase delta [Candida albicans]
          Length = 1038

 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 196/817 (23%), Positives = 359/817 (43%), Gaps = 133/817 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
             ++  K+ G SW+++ +        ++S C+ E ++D  +D+          ++ P+ + 
Sbjct: 189  LMIDCKITGMSWITLPRDKYKIVNNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRIL 247

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            + ++     K VF + +    I  A+VV             S   KP + + FTV     
Sbjct: 248  SFDIECAGRKGVFPEAEHDPVIQIANVV-----------QKSGESKPFVRNVFTV----- 291

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                           +S  GS +   +  E  L++     + K+D DV++G+N + FD+ 
Sbjct: 292  ------------NTCSSIIGSQIFEHQREEDMLMHWKEF-ITKVDPDVIIGYNTANFDIP 338

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
             +L+RA+   +  + +   GRLKR    K      +F S   G     +  I GR+  D 
Sbjct: 339  YVLNRAKALGL--NDFPFFGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDL 393

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWL 785
                +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y   DA+L
Sbjct: 394  LQFIQREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFL 452

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
             + L+  L  L    ++  ++G  +   L  +R Q+++ ++   FR              
Sbjct: 453  PLRLLDKLMCLVNYTEMARVTGVPFSYLL--SRGQQIK-VISQLFR-------------- 495

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
              K  +       ED  +  L +E +N                  Y G  V+EP++G YD
Sbjct: 496  --KCLQ-------EDIVIPNLKSEGSN----------------EEYEGATVIEPERGYYD 530

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG 949
              I  LDF+SLYPSI+  +N+C+TT+                 ++P+G    + S+   G
Sbjct: 531  VPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDY-FVHSNLRKG 589

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +    
Sbjct: 590  ILPTILDELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCL 649

Query: 1009 PLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
             ++  +T  GRE++  T + VQ        +  + +VIYGDTDS+M+  G  D+     +
Sbjct: 650  AISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKL 709

Query: 1061 AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
              +    V+ K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VR
Sbjct: 710  GEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVR 767

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L + V    L  IL ER        +  ++     D+   ++ L + VITK  +K
Sbjct: 768  RDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK 823

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
                +  +  Q HV++A R+++    +  + GD V Y+I          + G     +  
Sbjct: 824  ----HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSE 871

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            D L   +    ID+ YY  QQ+   + R+   I G +
Sbjct: 872  DPLYVLENSLPIDVKYYLDQQLTKPLERIFIPILGET 908


>gi|223460655|gb|AAI38048.1| Pola1 protein [Mus musculus]
          Length = 757

 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 204/813 (25%), Positives = 348/813 (42%), Gaps = 134/813 (16%)

Query: 1   MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
           + D     A R R        R EALERLK  +     +G+   Y ++    +Y+ V E+
Sbjct: 16  VSDSGSFAASRARREKKSKKGRQEALERLKKAK-----AGEKYKYEVEDLTSVYEEVDEE 70

Query: 61  EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
           +Y  LV  R+++     VDDDG+GY ++G+E    +       D     G+ S  K   +
Sbjct: 71  QYSKLVQARQDDDWI--VDDDGIGYVEDGRE----IFDDDLEDDALDTCGKGSDGKAHRK 124

Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
            R K     +V KPN       A  GK+      T+      SKD+ + +    ++   A
Sbjct: 125 DR-KDVKKPSVTKPNNIKAMFIASAGKK------TTDKAVDLSKDDLLGDILQDLNTETA 177

Query: 181 EFAPDEADRERRRRSVSSNIKSFV-----SVNSVKTNSQLVTNS---TNSVKENSDLINN 232
           +  P      +++RS  + +  F      ++ S K  S ++ N    T    + ++L   
Sbjct: 178 QITPPPVLIPKKKRSTGALLNPFSVHTPKAIPSGKPASPVLRNEPLLTPIPLKRAELAGE 237

Query: 233 FVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKI 289
             Q +  +  +E   +++E    D S +  K D    V  K  D+  E V+       ++
Sbjct: 238 LAQPECPEDEQELGVMEFEDGDFDESMDTEKVDE-KPVTAKTWDQETEPVE-------RV 289

Query: 290 STEKDP----------LLSATAGWK------------EVSGGNMVLDEGKSGLNCQESEF 327
             E DP           L   + W             +V   N+ L +G           
Sbjct: 290 EHEADPERGTTSYLENFLPDVSCWDIDQDDESIPQEVQVDSSNLPLVKG----------- 338

Query: 328 EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN 385
             DD+    FY LDA+E       G ++LFGKV  ++  TH SCCV+VKN++R +Y +P 
Sbjct: 339 -ADDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPR 396

Query: 386 GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKR 445
                    MK + +  +    P+     ++DV     ++I+ +   +   + IV   ++
Sbjct: 397 E--------MKFDLNTGKETAIPVT----MKDVYEEFDSKISAKYKIMKFKSKIV---EK 441

Query: 446 RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
            YAF   ++P    Y L++ Y  + P LP +LKGE F  + GT++S+LELFL+ RK+KGP
Sbjct: 442 NYAFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGP 500

Query: 506 SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
            WL +        P  +SWCK+E+    P  + V          PP+ V + ++KT+ N 
Sbjct: 501 CWLEVKNPQLLNQP--ISWCKFEVMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNV 554

Query: 566 RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
           +   +EI++ + +  H   +D         +P   +HF VV K    IFP  F +  + +
Sbjct: 555 QNHQHEIIAMAALVHHSFALDKAP-----PEPPFQTHFCVVSKPKDCIFPCDFKEVISKK 609

Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
           N K         ++ER L+   + +++K+D D+LVG  I              C  P+  
Sbjct: 610 NMKVE-----IAATERTLIGFFLAKVHKIDPDILVGWLI--------------CEEPTC- 649

Query: 686 WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD----TFLCSRDLLREVSYS 741
                RL+R  +   R G         P  M  +      D    T LC    + +   +
Sbjct: 650 ---CSRLRRLPLHFSRNG------PLCPVCMKAVLRPEYSDKSLYTQLCFYRYIFDADCA 700

Query: 742 LTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME 774
           L +L + + +K +K+  P  VL+ ++ ++++ E
Sbjct: 701 LEKLTEHEKDKLKKQFFPLRVLQDYRKVKNIAE 733


>gi|77022890|ref|XP_888889.1| hypothetical protein CaO19_5182 [Candida albicans SC5314]
 gi|76573702|dbj|BAE44786.1| hypothetical protein [Candida albicans]
          Length = 1038

 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 196/817 (23%), Positives = 359/817 (43%), Gaps = 133/817 (16%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
             ++  K+ G SW+++ +        ++S C+ E ++D  +D+          ++ P+ + 
Sbjct: 189  LMIDCKITGMSWITLPRDKYKIVNNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRIL 247

Query: 556  AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
            + ++     K VF + +    I  A+VV             S   KP + + FTV     
Sbjct: 248  SFDIECAGRKGVFPEAEHDPVIQIANVV-----------QKSGESKPFVRNVFTV----- 291

Query: 611  GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
                           +S  GS +   +  E  L++     + K+D DV++G+N + FD+ 
Sbjct: 292  ------------NTCSSIIGSQIFEHQREEDMLMHWKEF-ITKVDPDVIIGYNTANFDIP 338

Query: 671  VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
             +L+RA+   +  + +   GRLKR    K      +F S   G     +  I GR+  D 
Sbjct: 339  YVLNRAKALGL--NDFPFFGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDL 393

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWL 785
                +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y   DA+L
Sbjct: 394  LQFIQREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFL 452

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
             + L+  L  L    ++  ++G  +   L  +R Q+++ ++   FR              
Sbjct: 453  PLRLLDKLMCLVNYTEMARVTGVPFSYLL--SRGQQIK-VISQLFR-------------- 495

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
              K  +       ED  +  L +E +N                  Y G  V+EP++G YD
Sbjct: 496  --KCLQ-------EDIVIPNLKSEGSN----------------EEYEGATVIEPERGYYD 530

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG 949
              I  LDF+SLYPSI+  +N+C+TT+                 ++P+G    + S+   G
Sbjct: 531  VPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDY-FVHSNLRKG 589

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +LP +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +    
Sbjct: 590  ILPTILDELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCL 649

Query: 1009 PLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
             ++  +T  GRE++  T + VQ        +  + +VIYGDTDS+M+  G  D+     +
Sbjct: 650  AISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKL 709

Query: 1061 AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
              +    V+ K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VR
Sbjct: 710  GEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVR 767

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L + V    L  IL ER        +  ++     D+   ++ L + VITK  +K
Sbjct: 768  RDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK 823

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
                +  +  Q HV++A R+++    +  + GD V Y+I          + G     +  
Sbjct: 824  ----HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSE 871

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
            D L   +    ID+ YY  QQ+   + R+   I G +
Sbjct: 872  DPLYVLENSLPIDVKYYLDQQLTKPLERIFIPILGET 908


>gi|71002632|ref|XP_755997.1| DNA polymerase delta catalytic subunit Cdc2 [Aspergillus fumigatus
            Af293]
 gi|66853635|gb|EAL93959.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
            fumigatus Af293]
 gi|159130051|gb|EDP55165.1| DNA polymerase delta large chain [Aspergillus fumigatus A1163]
          Length = 1105

 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 174/659 (26%), Positives = 302/659 (45%), Gaps = 105/659 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            L K+D DV++G+NI+ FD   LL RA+  +      W+++  +        +   T F S
Sbjct: 383  LEKVDPDVIIGYNIANFDFPYLLDRAKHLKCTGFPYWTRLKGMAS------QATSTSFSS 436

Query: 710  ---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLK 764
               G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    + +
Sbjct: 437  KQMGNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTLNSVSYEFLKEQKEDVHHTMITE 494

Query: 765  MFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
            +F  T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+
Sbjct: 495  LFNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVK 552

Query: 824  YL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            +L  L      ++ ++P                       N++    +D           
Sbjct: 553  FLSQLFRKALEQQLVIP-----------------------NIKSTDEQD----------- 578

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT----------- 930
                     Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT           
Sbjct: 579  ---------YEGATVIEPIRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKNIVEKLK 629

Query: 931  VERSPDGLV-PHLPSSKTT----GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQ 984
            +++  D +V P+     TT    G+L ++L+ L+  R+  K  +   +   K   L+ +Q
Sbjct: 630  LKKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLAARKRAKKELAVETDPFKKAVLNGRQ 689

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------E 1036
             ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +
Sbjct: 690  LALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAK 749

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYA 1095
            VIYGDTDS+M+  G+ ++ +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA
Sbjct: 750  VIYGDTDSVMVKFGVTELEEAMKLGQEAADYVSSKFPKPIKLEFEKVYFPYLLINKKRYA 809

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
               + + +   ++ ++ KG++ VRRD  LL + V +  L +IL ER  +   + +  ++ 
Sbjct: 810  G--LYWTNPKKFDKMDTKGIETVRRDNCLLVQNVIETVLHKILIERDIDGAQDYVKETI- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
                D+   ++ + K VITK L+K   A   AK Q HV++A R+++    +  + GD V 
Sbjct: 867  ---SDLLQNKIDMSKLVITKALSK---ADYTAK-QAHVELAERMRKRDAGSAPTLGDRVA 919

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I    G       G     +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 920  YVIVKGAG-------GSKNYEKSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|242817379|ref|XP_002486944.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218713409|gb|EED12833.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1106

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 299/658 (45%), Gaps = 103/658 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS- 709
            L K+D DV++G+NI+ FD   LL RA+  +  S  +    RL ++   K     T F S 
Sbjct: 384  LQKVDPDVIIGYNIANFDFPYLLDRAKHLKCQS--FPYFTRLIKN---KSEAKETNFSSK 438

Query: 710  --GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
              G      +   GR+  D   L  RD  LR  SY+L  +    L + +++V    + ++
Sbjct: 439  QMGNRDTKSTNTNGRIQLDLLQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTIITEL 496

Query: 766  FQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
            F  T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++
Sbjct: 497  FNGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLINYAEMARVTGVPFNYLL--SRGQQVKF 554

Query: 825  L--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            +  +    R ++ ++P+                          L+ +D            
Sbjct: 555  ISQIFRKARTEQLVIPN--------------------------LSKQDEG---------- 578

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------V 931
                    Y G  V+EP +G YD  +  LDF SLYPSIIQ +N+C+TT           +
Sbjct: 579  -------EYEGATVIEPVRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNQKKVEHFNL 631

Query: 932  ERSPDGLV-PHLPSSKTT----GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
            ++  D +V P+     TT    G+L ++L+ L+  R+  K  +       K   L+ +Q 
Sbjct: 632  KKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLSARKRAKRELAVEKDPFKKAVLNGRQL 691

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +  +     +A   T  GR+++  T   V+    +        +V
Sbjct: 692  ALKVSANSVYGLTGATVGKLPCLEIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQV 751

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+  + +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 752  IYGDTDSVMVKFGVRTLEEAMKLGEEAAEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG 811

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + + +   Y+ ++ KG++ VRRD   L + V +  L++IL +R      E + N++  
Sbjct: 812  --LYWTNTKKYDKMDTKGIETVRRDNCRLVQTVIETVLNKILIDRDVNGAQEYVKNTI-- 867

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   ++ + K VITK L+K          Q HV++A R+++    +  + GD V Y
Sbjct: 868  --SDLLQNKIDMSKLVITKALSKSDY----TAKQAHVELAERMRKRDAGSAPTLGDRVAY 921

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +I    G       G     +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 922  VIVKGAG-------GSKNYEKSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 972


>gi|4519584|dbj|BAA75663.1| DNA polymerase II [Aeropyrum pernix]
          Length = 772

 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 178/680 (26%), Positives = 302/680 (44%), Gaps = 146/680 (21%)

Query: 628  KAGSNVLCCESSERA---LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            +AG  +   E+ +R+   ++   +  +  +D DV+VG+N + FD   L+ RA+V  V   
Sbjct: 195  QAGGEIEILEAEDRSDKKVIAGFVERVKSIDPDVIVGYNQNRFDWPYLVERARVLGV--- 251

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS--CIAGRLLCDTFLCSRDL-------L 735
               K+   +RS  P+             PG+     ++GRL  D    + +L       L
Sbjct: 252  ---KLAVGRRSVEPQ-------------PGLYGHYSVSGRLNVDLLDFAEELHEVKVKTL 295

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
             EV+  L  + +   +  ++E+                 L +Y   D   +M L      
Sbjct: 296  EEVADYLGVVREYWDDPSKREI-----------------LRKYLRDDVRSTMGLAEKF-- 336

Query: 796  LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
            LP   QL+ +SG    + +  +   R+E+ L+        +VP++           +RS 
Sbjct: 337  LPFGAQLSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVPNRV----------ERS- 385

Query: 856  HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
               E R                             YAG +VL PK G+++  I +LDF S
Sbjct: 386  ---EGR-----------------------------YAGAIVLRPKPGVHED-IAVLDFAS 412

Query: 916  LYPSIIQEYNICFTTVER------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
            +YP+I+ +YN+   T+ R            +P+  V H       G   ++L+  +  RR
Sbjct: 413  MYPNIMVKYNVGPDTLVRPGEEYGEEEVYTAPE--VGHKFRKSPPGFFKKILERFLSWRR 470

Query: 964  MVKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
             +++ MK       + + LD +Q+A+KL AN+ YG +G+ ++R+Y +  AE +T  GR I
Sbjct: 471  QIRSEMKKHPPDSPEYKLLDERQKAIKLLANASYGYMGWPHARWYCRECAEAVTAWGRSI 530

Query: 1022 LRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDG 1081
            +R+ +      L LEVIYGDTDS+ +    +D  K + +   V +E+       +I +D 
Sbjct: 531  IRTAIRKA-GELGLEVIYGDTDSLFVK---NDPEKVERLIRFVEEELG-----FDIKVDK 581

Query: 1082 LYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
            +Y+R+   + KK+Y  + V  K       I+  G + VR DWS L+KE        +L  
Sbjct: 582  VYRRVFFTEAKKRYVGLTVDGK-------IDVVGFEAVRGDWSELAKETQFKVAEIVLKT 634

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
             S ++ V+ + N    + E +R GQV + K VI KTLT+PP  Y     QPHV  AL ++
Sbjct: 635  GSVDEAVDYVRN----IIEKLRRGQVDMRKLVIWKTLTRPPSMY--EARQPHVTAALLME 688

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            ++G       G  + Y++    G        +  RA+      K +    +D++YY  +Q
Sbjct: 689  RAGIK--VEPGAKIGYVVTKGSGP-------LYTRAKPYFMASKEE----VDVEYYVDKQ 735

Query: 1261 IHPVVSRLCASIEGTSPERL 1280
            + P  S   +S  G   +RL
Sbjct: 736  VVPAASAHTSSNFGVIEKRL 755


>gi|403171115|ref|XP_003330341.2| DNA polymerase delta subunit 1 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169039|gb|EFP85922.2| DNA polymerase delta subunit 1 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1055

 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 187/702 (26%), Positives = 309/702 (44%), Gaps = 112/702 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AGS VL  +S E  LL +    + + D D+++G+N S FD+  LL RA+  +V S  +  
Sbjct: 324  AGSQVLEFKS-EDQLLAKWQAFVAECDPDLVIGYNTSNFDMPYLLDRAKALKVAS--FPY 380

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
            +GR++ S+        +    G      + + GRL  D     +   +  SY+L  +   
Sbjct: 381  LGRMRNSQTAVKETHFSSKAYGTRDSKETHLDGRLQLDLLQVMQRDYKLRSYTLNSVCAH 440

Query: 749  QLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
             L + +++V  H ++   Q  + E+   L  Y   DA+L   LM  L       ++  ++
Sbjct: 441  FLGEQKEDVH-HSIITDLQNGSAETRRRLAVYCLKDAYLPQRLMDKLMCFVNYTEMARVT 499

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
            G  +   L   +  +V   L        Y+VP                           L
Sbjct: 500  GVPFNYLLSRGQQIKVVSQLYRRANEHSYLVP--------------------------AL 533

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
             +E               G   P Y G  V+EP +G YD  I  LDF SLYPSI+  +N+
Sbjct: 534  KHE---------------GSDEP-YDGATVMEPVRGFYDVPIATLDFASLYPSIMMAHNL 577

Query: 927  CFTTVER-----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            C+TT+                   +P+G    + +SK  G+L  +L++L+  R+  +  +
Sbjct: 578  CYTTLTDAKTVKLLELRQDEDFIITPNGDY-FVKASKRKGLLAIVLEDLLSARKRARAEL 636

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST--- 1025
            K  +   K   LD +Q ALK++ANS+YG  G +  +    P++  +T  GRE+++ T   
Sbjct: 637  KLETDPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLPISMSVTAFGREMIKITKNE 696

Query: 1026 VDLVQNNLN-----LEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+L     N      EVIYGDTDS+M+  G  + A            V+ K+ K ++++ 
Sbjct: 697  VELKYTKANGYDDDAEVIYGDTDSVMVKFGCAEAADF----------VSAKFQKPIKLEF 746

Query: 1080 DGLYKRMLLLKKKKYAAV---KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
            + +Y   LL+ KK+YA +   K++  D M     + KG++ VRRD   L   V + CL +
Sbjct: 747  EKVYFPYLLISKKRYAGLHWTKLEKHDKM-----DAKGIETVRRDNCPLVSTVIETCLKK 801

Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
            +L +R     V+       +V  D+   ++ L + VITK L K       A  Q HV++A
Sbjct: 802  MLIDRD----VKGAEAYTKQVISDLLQNRIDLSQLVITKALAKADY----AAKQAHVELA 853

Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
             R+K+    +  + GD V Y+I   +GT    +       +  D L   +    ID  YY
Sbjct: 854  KRMKKRDAGSAPALGDRVAYVII--KGTKDARAY-----EKSEDPLYVLENNIPIDTKYY 906

Query: 1257 ASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSET 1298
               Q+   + R+   I G   E+ +  L  D ++  S  + T
Sbjct: 907  LDNQLSKPLMRIFEPILG---EKSSSLLAGDHTRIVSIATPT 945


>gi|297620193|ref|YP_003708298.1| DNA polymerase Pol2 [Methanococcus voltae A3]
 gi|297379170|gb|ADI37325.1| DNA polymerase Pol2 [Methanococcus voltae A3]
          Length = 879

 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 184/686 (26%), Positives = 312/686 (45%), Gaps = 127/686 (18%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP- 698
            E+ L+NR  IE+ K   DV+  +N   FD   L  RA +  +  +  +   R ++++   
Sbjct: 269  EKELINR-TIEILK-QYDVIYTYNGDNFDFPYLKKRANIYEIELNFSNNSQRSEKTKKLD 326

Query: 699  --------------KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
                          KL + + I  S       S I G +  D +  +R LL    Y L  
Sbjct: 327  KVNDESNDESNNNLKLIQPQIIKISKGGINRKSKIPGIVHIDLYPIARKLLNLTKYKLEN 386

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            + +     +++ V   D+ KM++T +S   L++Y   DA  + ++  +   LPL    + 
Sbjct: 387  VVQELFKIEKEAVDYGDIPKMWETEDST--LLKYAYEDALYTYKMGNYF--LPLEIMFSR 442

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            I       T +   +Q VE+LL+     +  I P                          
Sbjct: 443  IINQPLYDTSRMNSSQMVEFLLMKRSFEQNMISP-------------------------- 476

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                      N  S + +R+  +  +YAGG V EP KG+ +  I+ LDF SLYPSI+  +
Sbjct: 477  ----------NRPSSSSYRERAKF-SYAGGYVREPLKGIQED-IVSLDFMSLYPSILISH 524

Query: 925  NICFTTVERSPDGLVPHLPSSKTT--GVLPELLKNLVQRRRMVKTWMKTASGLKIQQ--- 979
            NI       SP+ ++      K    G++P+ L  L+ RR+ +K  +K     KIQ+   
Sbjct: 525  NI-------SPETVLYDEKERKNMELGIIPKTLDELLSRRKRIKKLLKD----KIQKNEF 573

Query: 980  ------LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL 1033
                  L+ +Q+++K+ ANS YG L F  +R+Y+   AE++T  GR+ ++ T++  +   
Sbjct: 574  DEEYNRLEHEQKSIKVLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAE-KF 632

Query: 1034 NLEVIYGDTDSIM-------IHSGIDDIAKAKAIAGKVIQEVNKKY---------KCLEI 1077
              +VIY DTD            + I+D   A  ++ + +    KK+         + +E+
Sbjct: 633  GFKVIYADTDGFYAKWDYEKAKTKIEDSGDALELSKEELIISTKKFLKSINDELPEGMEL 692

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + +G +KR L + KKKYA ++   +DG  + VI  KGL++VRRDWS ++K      +  +
Sbjct: 693  EFEGYFKRGLFITKKKYALIE---EDG--HVVI--KGLEVVRRDWSNIAKNTQQAVIKAL 745

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L +    ++ + I   + K  +D++ G +     +I   LTK  E Y      PH++VA 
Sbjct: 746  LEDGDI-NLAKKI---IKKTIDDLKKGNIDKNDLLIHTQLTKNIEEYKST--APHIEVAK 799

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            ++KQ G S     GD + YII   +G+ S     I++RA   D  K        D++YY 
Sbjct: 800  KIKQRGDS--VRVGDVISYIIV--KGSRS-----ISERAELLDFAKD------YDVNYYI 844

Query: 1258 SQQIHPVVSRLCASIEGTSPERLADC 1283
              Q+ P V R+  S+ G S + L + 
Sbjct: 845  DNQVLPPVIRIMESL-GISEDELKNS 869


>gi|156844887|ref|XP_001645504.1| hypothetical protein Kpol_1004p20 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116168|gb|EDO17646.1| hypothetical protein Kpol_1004p20 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1096

 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 189/801 (23%), Positives = 358/801 (44%), Gaps = 141/801 (17%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++   K+   P   +VS C+ E+ ++  KD+   +   + +   P+ + + ++
Sbjct: 263  IVGMSWITLPKQKYKMIPEKDKVSTCQLEVKINY-KDLISHAPENNWSHSAPLRILSFDI 321

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      VF + +  + I  A+VV    AK           KP + + FTV         
Sbjct: 322  ECAGRVGVFPEPEHDSVIQIANVVSIAGAK-----------KPFIRNVFTV--------- 361

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
                     D  S    + +    +E+ +L++    + K+D D+++G+N + FDL  L+ 
Sbjct: 362  ---------DTCSPITGSHIFSHETEKEMLSKWREFIVKVDPDLIIGYNSANFDLPYLID 412

Query: 675  RAQVCRVPSSMWSKIGRL--KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
            RA+  ++ +  +   GRL   + E+ +       +G+  S  +   I GRL  D     +
Sbjct: 413  RAKALKIDN--FPYFGRLFNVKQEVKESSFSSKAYGTRTSKVVN--IDGRLQLDLLQFIQ 468

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELM 790
               +  SY+L  ++   L + +++V  H ++   Q    E+   L  Y   DA+L + L+
Sbjct: 469  REYKLRSYTLNAVSAHFLGEQKEDVH-HSIITDLQNGDSETRRRLAVYCLKDAYLPLRLL 527

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
             +L  L    +++ ++G  +   L   +  +V   L         ++P+         MA
Sbjct: 528  ENLMALVNYTEMSRVTGVPFSYLLSRGQQIKVVSQLFRKCIEIDTVIPN---------MA 578

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             Q ++                                   Y G  V+EP +G YD  I  
Sbjct: 579  SQGTDQ---------------------------------QYEGATVIEPIRGYYDIPIAT 605

Query: 911  LDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT-TGVLP 952
            LDFNSLYPSI+  +N+C+T      TV+R           +P+G   +  S+K   G+LP
Sbjct: 606  LDFNSLYPSIMMAHNLCYTTLCNKETVQRLNLKKDEDYIITPNG--DYFVSTKLRHGILP 663

Query: 953  ELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
             +L+ L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     ++
Sbjct: 664  IILRELIDARKRAKKDLKNETDPFKKNVLNGRQLALKISANSVYGFTGATVGKLPCLAIS 723

Query: 1012 ELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
              +T  GR+++ +T + V+    +         V+YGDTDS+M+  G  D+ ++  +  +
Sbjct: 724  SSVTAFGRDMIMTTKNAVEEKYRISNGYKHDAVVVYGDTDSVMVKFGTSDLKESMELGTE 783

Query: 1064 VIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
                V+  +K  + ++ +  Y   LL+ KK+YA   + +     Y+ +++KGL  VRRD 
Sbjct: 784  AAAFVSGLFKDPINLEFEKAYFPYLLINKKRYAG--LYWTRTEKYDKLDQKGLASVRRDS 841

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
              L   V +  L +IL +R  ++ +  +     ++ +++   +V + + +I+KTL     
Sbjct: 842  CPLVSIVMNKVLKKILIDRDVDNALAYVK----QIIDNLLHNKVDISQLIISKTLA---- 893

Query: 1183 AYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              P+  N QPH  +A R+++    +G + GD V Y+I        G +  +  RA  P  
Sbjct: 894  --PNYTNPQPHAILAERIRKRE-GSGPNTGDRVDYVIM-------GGNDKLYNRAEDP-- 941

Query: 1242 LKKGDGKWMIDIDYYASQQIH 1262
            L   +    +D  YY + Q+ 
Sbjct: 942  LYVLEHNLQLDSKYYLTNQLQ 962


>gi|410084320|ref|XP_003959737.1| hypothetical protein KAFR_0K02460 [Kazachstania africana CBS 2517]
 gi|372466329|emb|CCF60602.1| hypothetical protein KAFR_0K02460 [Kazachstania africana CBS 2517]
          Length = 1132

 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 206/822 (25%), Positives = 360/822 (43%), Gaps = 147/822 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
             +V   + G SW+++  +K++  P  +RVS C+ E+ ++  KD+    +    +   P+ 
Sbjct: 293  LMVDCGIVGMSWITLPKNKYTIIPENKRVSTCQLEVNINY-KDLIAHPAEGDWSHSAPLR 351

Query: 554  VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + +++      VF + +  + I  A+V+    AK           KP + + FTV   
Sbjct: 352  ILSFDIECAGRIGVFPEPEHDSVIQIANVMSIAGAK-----------KPFVRNVFTV--- 397

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
                           D  +    + +    +E  +L+     + + D DV++G+N   FD
Sbjct: 398  ---------------DTCAPITGSRIYSHETEAEMLSHWRDFIVEADPDVIIGYNTGNFD 442

Query: 669  LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
            +  L++RA+  ++ +  +   GRL   + E+         +G+  S  +   I GRL  D
Sbjct: 443  IPYLINRARALKIEN--FPYFGRLVNVKQEIKDTVFSSKAYGTRESKNV--NIDGRLQLD 498

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAW 784
                 +   +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+
Sbjct: 499  LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIITDLQHGDSETRRRLAVYCLKDAY 557

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
            L + L+  L  L    ++  ++G  +   L  AR Q+++ ++   FR  K I  D     
Sbjct: 558  LPLRLLEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK-VVSQLFR--KCIQIDTVI-- 610

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                M  Q S+                                   Y G  V+EP +G Y
Sbjct: 611  --PNMQSQGSDE---------------------------------QYEGATVIEPIRGYY 635

Query: 905  DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
            D  I  LDFNSLYPSI+  +N+C+T      TVER           +P+G   +  S K 
Sbjct: 636  DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLKKDKDYIITPNG--DYFVSDKL 693

Query: 948  -TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+LP +L+ L+  R+R  K         K   L+ +Q ALK++ANS+YG  G +  + 
Sbjct: 694  RRGILPIILEELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKL 753

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
                ++  +T  GRE++  T   VQ   ++        +V+YGDTDS+M+  G  D+ +A
Sbjct: 754  PCLAISSSVTAFGREMIMRTKTAVQEKYSVKNGYKHDAQVVYGDTDSVMVKFGTTDLQEA 813

Query: 1058 KAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAV---KVQFKDGMPYEVIERK 1113
              +  +    V+  +K  + ++ +  Y   LL+ KK+YA +   KV+      Y+ +++K
Sbjct: 814  MDLGAEAAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLYWTKVE-----KYDKLDQK 868

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            GL  VRRD   L   V +  L  IL  R  +  +E +  ++     D+   +V + K +I
Sbjct: 869  GLASVRRDSCSLVSIVMNKVLKMILIGRDVDGALEFVKKTI----GDILHNRVDISKLII 924

Query: 1174 TKTLTKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            +KTL       P+  N QPH  +A R+K+     G + GD V Y+I       +G +  +
Sbjct: 925  SKTLA------PNYTNPQPHAVLADRMKKRD-GIGPNVGDRVDYVI-------TGGNDKL 970

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              RA  P  L   +    +D  YY   Q+   V  + A I G
Sbjct: 971  YNRAEDP--LYVLEQNLQVDSKYYLQNQLQNPVISIIAPIIG 1010


>gi|212530840|ref|XP_002145577.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210074975|gb|EEA29062.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1105

 Score =  173 bits (438), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 176/656 (26%), Positives = 296/656 (45%), Gaps = 103/656 (15%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            K+D DV++G+NI+ FD   LL RA+  +  S  +     L R    K     T F S   
Sbjct: 385  KVDPDVIIGYNIANFDFPYLLDRAKHLKCQSFPY-----LTRLPQIKSEAKETNFSSKQM 439

Query: 710  GASPGIMSCIAGRLLCDTF-LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
            G      +   GR+  D   L  RD  LR  SY+L  +    L + +++V    + ++F 
Sbjct: 440  GNRDTKSTNTNGRIQLDLLQLVQRDHQLR--SYTLNSVCAEFLGEQKEDVHHTIITELFN 497

Query: 768  -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL- 825
             T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V+++ 
Sbjct: 498  GTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNYLL--SRGQQVKFIS 555

Query: 826  -LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
             +    R ++ ++P+                          L+ +D   D D        
Sbjct: 556  QIFRKARTEQLVIPN--------------------------LSKQD---DGD-------- 578

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VER 933
                  Y G  V+EP +G YD  +  LDF SLYPSIIQ +N+C+TT           +++
Sbjct: 579  ------YEGATVIEPIRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNKHKVEHFNLKK 632

Query: 934  SPDGLV-PHLPSSKTT----GVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQAL 987
              D +V P+     TT    G+L ++L+ L+  R+R  K         K   L+ +Q AL
Sbjct: 633  DEDYIVTPNGDMFCTTKVRKGLLSQILEELLGARKRAKKELAVEKDPFKKAVLNGRQLAL 692

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIY 1039
            K++ANS+YG  G +  +     +A   T  GR+++  T   V+    +        +VIY
Sbjct: 693  KVSANSVYGLTGATVGKLPCLEIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIY 752

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M+  G+  + +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   
Sbjct: 753  GDTDSVMVKFGVRTLEEAMKLGEEAADYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG-- 810

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            + + +   Y+ ++ KG++ VRRD   L + V +  L++IL +R      + + N +    
Sbjct: 811  LYWTNTKKYDKMDTKGIETVRRDNCRLVQTVIETVLNKILIDRDINGAQDYVKNMI---- 866

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+   +V L K VITK L+K          Q HV++A R+++    +  + GD V Y+I
Sbjct: 867  SDLLQNKVDLSKLVITKALSKSDY----TAKQAHVELAERMRKRDAGSAPTLGDRVAYVI 922

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                G       G     +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 923  VKGAG-------GSKNYEKSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|327401413|ref|YP_004342252.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
 gi|327316921|gb|AEA47537.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
          Length = 786

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 182/659 (27%), Positives = 297/659 (45%), Gaps = 132/659 (20%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ER +L R +  +  +D DV+VG+N   FD   +  RA+      S+   IGR  RSE+  
Sbjct: 207  EREVLKRFVKAVKDIDPDVIVGYNQDSFDWPYIKKRAEKL----SVRLDIGR-DRSELA- 260

Query: 700  LRKGRTIFGSGASPGIMSCIAGRL---LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            +R GR              IAGRL   L D  + S D+  +   ++ +   T++  +  +
Sbjct: 261  MRGGR------------PKIAGRLNVDLYDIAMRSIDVKIKKLENVAEFLGTKV--ELAD 306

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +   D+ K + T      ++ Y   D   +  +   L  LP+  +L+ +         + 
Sbjct: 307  IEAKDIYKHW-TRGDREAVLRYARQDVLNTYFIAEEL--LPMHYELSRMIRIPLDDVTRC 363

Query: 817  ARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
             R ++VE+LL+  A++                                            
Sbjct: 364  GRGKQVEWLLMSEAYKL------------------------------------------G 381

Query: 876  DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
            + + N    G++   Y G  VLEP +GL++  ++ LDF S+YPSI+  +NI       SP
Sbjct: 382  ELAPNPREAGEK---YEGAFVLEPARGLHEN-VICLDFASMYPSIMISFNI-------SP 430

Query: 936  DGLV-------------PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLKIQQL 980
            D LV              H    +  G    +L+ L+++RR +K  MK       + + L
Sbjct: 431  DTLVIGKCDDCNVAPEVGHKFRREPDGFFKRILRMLIEKRREIKKIMKKLDRESNEYRLL 490

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            DI+Q  LK+  NS YG  G+S +R+Y +  AE  T  GR  ++ +  + +  L LEV+YG
Sbjct: 491  DIKQATLKVLTNSFYGYTGWSLARWYCRECAEATTAWGRHFIKKSAQIAK-ELGLEVLYG 549

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            DTDSI +     ++ + K    K+I ++ ++   L I++D  Y  +  ++KK+YA +   
Sbjct: 550  DTDSIFVKKSGLNLEELKKEVRKLIGKLREEMPIL-IEIDEYYSAIFFVEKKRYAGLTA- 607

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              DG     I  KGL++ R DW  L+K V    +  IL +R  E  V    N + KV E+
Sbjct: 608  --DGR----IVVKGLEVRRGDWCELAKRVQKNVIEIILKDRDPEKAV----NYVRKVIEE 657

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG--YSTGCSAGDTVPYII 1218
            ++SG+V +E Y+I K LT+ P  Y     Q HV+ A++  + G  Y+ G   G  V    
Sbjct: 658  IKSGKVPIEDYIIYKGLTRKPSKYESM--QAHVKAAMKAAKKGIVYTIGSKVGFVVL--- 712

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI---------DYYASQQIHPVVSRL 1268
               +GT +     I  RA   D ++  DG  ++D+         DYY   Q+ PVV R+
Sbjct: 713  ---KGTGN-----IGDRAFPSDLIEDFDGDSIVDVDGNRYKLDKDYYIDNQVIPVVMRI 763


>gi|50543418|ref|XP_499875.1| YALI0A08426p [Yarrowia lipolytica]
 gi|49645740|emb|CAG83802.1| YALI0A08426p [Yarrowia lipolytica CLIB122]
          Length = 1072

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 198/808 (24%), Positives = 361/808 (44%), Gaps = 127/808 (15%)

Query: 502  VKGPSWLSISKFSSCPAPQR-VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL- 559
            + G SW+++ K       Q  VS C+ EI + S KD+    +    +++ P+ V + ++ 
Sbjct: 226  ISGMSWVTLPKGKYTIETQSLVSRCQREINI-SYKDLIAHPADGEWSDIAPLRVLSFDIE 284

Query: 560  ----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
                K VF   + ++ I+  + V   +   DT        +P + + FT+         P
Sbjct: 285  CAGRKGVFPDPK-IDPIIQIANVVSRQG--DT--------RPFVRNVFTL-----NTCSP 328

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
            +            AG+ VL  ES E  +L R    + ++D DV++G+N + FD   L+ R
Sbjct: 329  I------------AGAQVLEHES-EGDMLMRWKQFVNEVDPDVIIGYNTTNFDFPYLIDR 375

Query: 676  AQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL 735
            A+  ++    +   GRL   +        +    G     +  I GR   D     +   
Sbjct: 376  AKTLKLTD--FPYFGRLTHIQNVLRDSTFSSKAYGTRESKVLNIDGRTQLDLLQFIQREY 433

Query: 736  REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHL 793
            +  +Y+L  ++   L K++KE   H ++   Q    ++   L  Y   DA+L   LM  L
Sbjct: 434  KLRTYTLNAVSAHFL-KEQKEDVHHSIITDLQNGNADTRRRLAVYCLKDAYLPQRLMDKL 492

Query: 794  SVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQR 853
              L    ++  ++G  +   L  +R Q+++            ++   F    E  M    
Sbjct: 493  MCLINYTEMARVTGVPFSFLL--SRGQQIK------------VISQLFRKALEVGMVI-- 536

Query: 854  SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
                              N   D S  +         Y G  V+EP++G YD  I  LDF
Sbjct: 537  -----------------PNLKQDGSSEEQ--------YEGATVIEPERGYYDIPIATLDF 571

Query: 914  NSLYPSIIQEYNICFTTV-----------------ERSPDGLVPHLPSSKTTGVLPELLK 956
            +SLYPSI+  +N+C+TT+                  R+P+G +  +      G+LP +L+
Sbjct: 572  SSLYPSIMMAHNLCYTTLLDKATVERLDLKLDEDYHRTPNGDL-FVNQKTRKGILPIVLE 630

Query: 957  NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
             L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++  +T
Sbjct: 631  ELLSARKKAKADLKKETDPFKKAVLDGRQLALKISANSVYGFTGATVGKLPCLAISSSVT 690

Query: 1016 QQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQE 1067
              GR++++ T + V+N          N +VIYGDTDS+M+  G+ D+  A  +  +  + 
Sbjct: 691  AYGRDMIQFTKEQVENKYTKANGYPENAKVIYGDTDSVMVKFGVPDLKTAMDMGLEAAEY 750

Query: 1068 VNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLS 1126
            V++ + K ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD   L 
Sbjct: 751  VSEMFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTNPEKFDKMDTKGIETVRRDNCRLV 808

Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
            + V +  L +IL +R     VE     +  +  ++   +V L + VITK L++  + Y  
Sbjct: 809  QNVIETVLRKILMDRD----VEGAQAYVKTMVANLLQNKVDLSQLVITKQLSR--QDY-- 860

Query: 1187 AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGD 1246
            A  Q HV++A R+++    +  + GD V Y+I   +G   G +    +++  P  + + +
Sbjct: 861  AAKQAHVELAERMRKRDAGSAPALGDRVAYVII--KGAVGGKNY---EKSEDPSYVLENN 915

Query: 1247 GKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                ID  YY   Q+   + R+   I G
Sbjct: 916  IP--IDTKYYLENQLQKPLQRIFDPILG 941


>gi|159463358|ref|XP_001689909.1| DNA polymerase delta subunit one [Chlamydomonas reinhardtii]
 gi|158283897|gb|EDP09647.1| DNA polymerase delta subunit one [Chlamydomonas reinhardtii]
          Length = 1091

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 193/757 (25%), Positives = 340/757 (44%), Gaps = 113/757 (14%)

Query: 496  FLVKRKVKGPSWLSISKFS-SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            F+V  KV G +W+ +   +      + ++ C+ E  +   K I  +   ++ + V P+ +
Sbjct: 235  FMVDCKVVGGNWVELPAGAYQLETARPMTHCQIEAHIRYDKLISHAPDGEY-SSVAPLRI 293

Query: 555  TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
             +I+++    K             C  +AKID P++        + S  +V  K+DG + 
Sbjct: 294  MSIDIECCGRKG------------CFPEAKID-PVIQ-------IASMVSVSGKMDGPVV 333

Query: 615  P--MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVL 672
               M     A    S  G+ V+   + E  +L R    L + D D+++G+NI  FDL  L
Sbjct: 334  KNIMTLGSCA----SIVGAEVMSF-NDEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYL 388

Query: 673  LHRAQVCRVPS--SMWSKIGRLKRSEMPKLRKGR---TIFGSGASPGIMSCIAGRLLCDT 727
              RA   ++     +W ++    R    ++R G+     +G+     I   I GR+  D 
Sbjct: 389  YERADALKIGKKFQVWGRV----RGSHTRMRDGQFSSKAYGTHEYKDIT--IEGRVQFDL 442

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWL 785
                +   +  SYSL  ++   L + +++V  H  +   Q    E+   L  Y   DA+L
Sbjct: 443  LTAIQRDHKLSSYSLNSVSAHFLGEQKEDVH-HSAIADLQAGNEETRRRLAVYCLKDAYL 501

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
               L+  L       ++  ++G      L   ++ +V   LL    AK +++P+      
Sbjct: 502  PQRLLDKLMYTYNYIEMARVTGVPLSYLLTRGQSIKVFSQLLRKAAAKGFVIPN------ 555

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                                                   G  G  Y G  VL+PK G YD
Sbjct: 556  -------------------------------IKVQGPVAGADGVGYEGATVLDPKIGFYD 584

Query: 906  KYILLLDFNSLYPSIIQEYNICFTTV--------------ERSPDGLVPHLPSSKTTGVL 951
            + +  LDF SLYPSI+  +N+C+TT+              E+SP G    + +S+  G+L
Sbjct: 585  RPVATLDFASLYPSIMMAHNLCYTTLLTKDQLNIVPPEDREQSPSGDW-FVRNSRQRGLL 643

Query: 952  PELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPL 1010
            PE+L+ L+  R+  K  +K      K   LD +Q ALK++ANS+YG  G +  +     +
Sbjct: 644  PEILEELLAARKRAKNDLKAEKDPFKRAVLDGRQLALKVSANSVYGFTGATVGKMPCLAI 703

Query: 1011 AELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
            +   T  GRE++ +T  LVQ +         + EVIYGDTDS+M++  + D+A+A  +  
Sbjct: 704  SASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGDTDSVMVNFKVADVARAMELGR 763

Query: 1063 KVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
            +    V+K +   ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD
Sbjct: 764  EAAAVVSKAFPPPVKLEFEKVYYPYLLMNKKRYAG--LLWTRPETHDKMDSKGIETVRRD 821

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL + V   CL +IL  +  +  V  +      V  D+   ++ L   VI+K LT+  
Sbjct: 822  NCLLVRNVVTTCLERILIGKDVQGAVGYVKG----VIADLLMNKIDLSLLVISKGLTQDA 877

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            + Y       HV++A ++++   +T  + GD VPY+I
Sbjct: 878  DEY--EGKIAHVELAKKMRKRDPATAPAVGDRVPYVI 912


>gi|378755079|gb|EHY65106.1| hypothetical protein NERG_01552 [Nematocida sp. 1 ERTm2]
          Length = 1020

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 173/691 (25%), Positives = 292/691 (42%), Gaps = 138/691 (19%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS-EMPKLRKGRTIFG---- 708
            L+ DVL G+NI+ FD+  LL RA    +P   +    R K    M KL +          
Sbjct: 261  LNPDVLTGYNITQFDMPYLLDRASTLGLPD--FKYFSRTKEPVHMNKLPQTNNTGNNSGN 318

Query: 709  -------------------SGASPGIMS----CIAGRLLCDTFLCSRDLLREVSYSLTQL 745
                               SG+S G  +     + GR++ D     +      SYSL  +
Sbjct: 319  NGNSGNNTGNNNGKEGDDKSGSSGGFTAPATLVVPGRIVFDMLDIVKKEFNLHSYSLNSV 378

Query: 746  AKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
            +   L + +++V    +L ++  T E+   L  Y   D +L + +M+  ++     +L  
Sbjct: 379  SSVFLGEQKEDVHYTQILALYNGTDETRKRLGVYCLKDTYLPIRIMYTKNLFINYCELAR 438

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   +   +  RV   LL   +A  YI+P                          
Sbjct: 439  VTGVPFEYLVNRGQGIRVLSQLLRQAKAYNYILPVVI----------------------- 475

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                  +   Y GG V+EP KG Y   +++LD+ SLYPSII  Y
Sbjct: 476  ---------------------GQSETYEGGYVMEPNKGFYSNPVVVLDYASLYPSIIMAY 514

Query: 925  NICFTTV--------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            N+C+TT+                SP G    L   K  G+LP +L  L++ R+ V+  +K
Sbjct: 515  NMCYTTLLSKEQASKMDKSEYTESPTGDC-FLRKEKKPGILPVILTGLLEGRKAVRAELK 573

Query: 971  TASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
                 +++  L+ +Q ALK++ANS+YG  G + +     P++  +T  GREIL+ T +LV
Sbjct: 574  NIKDPELKASLNARQLALKVSANSVYGFTGAARTGLPCIPISRSVTGFGREILKKTKELV 633

Query: 1030 QNNL--------------------------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
            +N                            NL V YGDTDS+M+      + +A  +  +
Sbjct: 634  ENEYNKGEKTEGSDEQENNNSQKEGNRRTWNLFVAYGDTDSVMVTQPGLTLEQAFQVGDE 693

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIERKGLDMVRRD 1121
            + + V+ +    L ++ + +Y   +L+ KK+YA   K    D      I+ KG++ VRRD
Sbjct: 694  ISKFVSTRLPNPLTLEFEKVYHPFVLINKKRYAGCTKTSPSDK---GRIDTKGIETVRRD 750

Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
              LL +++   C++++  E   E     I + +    +++ S ++ + + +ITK++TK  
Sbjct: 751  NCLLVRDLMKECINKVFLEGDVEGTRALIKDRV----KELLSNRIGISQLIITKSITKQG 806

Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
              Y  A +  HV +A R+K+    TG   GD V Y+I   +G             R  D 
Sbjct: 807  GDY--AVSLAHVALAERMKKRE-GTGPGLGDRVSYVIITGKG---------PLHERSEDP 854

Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
            +   +    ID  YY   QI   + RL + +
Sbjct: 855  VYALNNNLPIDTLYYLKNQITKPLERLLSYV 885


>gi|444316824|ref|XP_004179069.1| hypothetical protein TBLA_0B07320 [Tetrapisispora blattae CBS 6284]
 gi|387512109|emb|CCH59550.1| hypothetical protein TBLA_0B07320 [Tetrapisispora blattae CBS 6284]
          Length = 1104

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 199/822 (24%), Positives = 364/822 (44%), Gaps = 138/822 (16%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++  +K++      +VS C+ E+T++  KD+    +    +   P+ + + ++
Sbjct: 271  IVGMSWITLPKTKYNLIQENMKVSTCQLEVTINY-KDLIAHPAEGEWSHTAPLRILSFDI 329

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      +F + +  + I  A++V    AK           KP + + FT+         
Sbjct: 330  ECAGRVGIFPEPEYDSVIQIANIVSVVGAK-----------KPFIRNVFTL-----DTCA 373

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            P+             GS+V     +E  +L      + ++D DV++G+NI  FD   L+ 
Sbjct: 374  PI------------TGSHVFD-HKTEAEMLQHWKDFIIEVDPDVMIGYNIQNFDFPYLID 420

Query: 675  RAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            RA+  ++     +S+I   K+     +   +    +G      + I GRL  D F   + 
Sbjct: 421  RAKALKIEDFPYFSRISNSKQVVKEAVFSSK---ATGTRESKNTNIDGRLQFDLFQFIQR 477

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMF 791
              +  SY+L  ++   LN+ +++V  H ++   Q    E+   L  Y   DA+L + L+ 
Sbjct: 478  EYKLRSYTLNAVSANFLNEQKEDVH-HSIITDLQLGDSETRRRLAVYCLKDAYLPLRLLD 536

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L  L    ++  ++G  +   L   R Q+++ ++   FR    I               
Sbjct: 537  KLMGLVNYTEMARVTGVPFSYLL--TRGQQIK-VISQLFRKCLEI--------------- 578

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
                              D    N TS     +      Y G  V+EP +G YD  I  L
Sbjct: 579  ------------------DTIIPNITSKGSDEQ------YEGATVIEPIRGYYDIPIATL 614

Query: 912  DFNSLYPSIIQEYNICFTTVER-----------------SPDGLVPHLPSSKTTGVLPEL 954
            DFNSLYPSI+  +N+C+TT+                   +P+G    +   +  G+LP +
Sbjct: 615  DFNSLYPSIMMAHNLCYTTLCNKQIVNSLNLKLDEDYIITPNGDY-FVTEKRRHGILPII 673

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L +L+  R+  K  +K      K   L+ +Q ALK++ANS+YG  G +  +     ++  
Sbjct: 674  LNDLISARKKAKNDLKKEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSS 733

Query: 1014 ITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            +T  GR+++  T + VQ+  +++        V+YGDTDS+M+  G  D+ ++  +  +  
Sbjct: 734  VTSFGRKMILETKNAVQDKYSVKNGYEHDAVVVYGDTDSVMVKFGTSDLKESMRLGTEAA 793

Query: 1066 QEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
              V+  +K  + ++ + +Y   LL+ KK+YA +     D   ++ +++KGL  VRRD   
Sbjct: 794  AWVSTLFKHPINLEFEKVYFPYLLINKKRYAGLYWTNPD--KFDKLDQKGLASVRRDSCP 851

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L   V +  L  IL +R+ +  +E + +    V +D+   +  + K +I+KTL  P    
Sbjct: 852  LVSIVMNRVLKTILIDRNVDGALEYVKD----VIDDLLHNRADISKLIISKTLA-PQYTN 906

Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
            P    QPH  +A R+K+     G + GD V Y++      +SG+   +  RA  P  L  
Sbjct: 907  P----QPHAVLAARIKKRD-GNGPNVGDRVDYVV------TSGND-KLYNRAEDP--LYA 952

Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
             +    ID  YY + Q+   ++ +   I G   ER A+ + L
Sbjct: 953  LEHNIQIDSKYYLTNQLQNPLTSIIEPIIG---ERQANAMFL 991


>gi|344233498|gb|EGV65370.1| DNA polymerase delta catalytic subunit [Candida tenuis ATCC 10573]
          Length = 1060

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 168/676 (24%), Positives = 298/676 (44%), Gaps = 98/676 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS +   E  +   ++     L K+D DV++G+N S FDL  LL RA+   +P   +   
Sbjct: 322  GSQIFSHEKEDEMFMHWKEFVL-KVDPDVIIGYNTSNFDLPYLLDRARALHLPK--FPYF 378

Query: 690  GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            GR+K+    K     ++F S   G     +  I GR+  D     +   +  SY+L  ++
Sbjct: 379  GRMKQI---KQEVKDSVFSSRAYGTRENKVINIEGRMQLDLLQFVQREYKLRSYTLNSVS 435

Query: 747  KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    E+   L  Y   DA+L + L+  L  L    ++  
Sbjct: 436  AEFLGEQKEDVH-HSIITDLQNGDAETRRRLAVYCLKDAYLPLRLVEKLMCLVNYTEMAR 494

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G  +   L   +  +V   L      +  ++P+  +                      
Sbjct: 495  VTGVPFSYLLSRGQQIKVISQLFRKCLEQDIVIPNMKS---------------------- 532

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
            E TNE+                    Y G  V+EP +G YD  I  LDF+SLYPSI+  +
Sbjct: 533  EGTNEE--------------------YEGATVIEPSRGYYDVPITTLDFSSLYPSIMMAH 572

Query: 925  NICFTTVER----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTW 968
            N+C+TT+                  +P+G    +  +K  G+LP +L  L+  R+  K  
Sbjct: 573  NLCYTTLLNKQTIKTFGLNEDDYILTPNGDY-FVKDNKRQGILPTILNELLTARKKAKAD 631

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            +K  +   +   L+ +Q ALK++ANS+YG  G +  +     ++   T  GR ++  T +
Sbjct: 632  LKKETDPFRKSVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSTTAFGRVMIEKTKN 691

Query: 1028 LVQN--------NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEID 1078
             V+         + + +V+YGDTDS+MI  G  D++K   +  +  + V+ K+K  ++++
Sbjct: 692  EVEEFYSKKNGFDYDAKVVYGDTDSVMIKFGYTDLSKCMELGEQAAEYVSSKFKNPIKLE 751

Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
             +  Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD   L + V    L  IL
Sbjct: 752  FEKCYYPYLLINKKRYAG--LYWTNPNKFDKMDTKGIETVRRDNCRLVQNVITKVLVLIL 809

Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
             ER        +  ++     D+   +V L + VITK  +K  + Y  A  Q H+ +A +
Sbjct: 810  EERDVGKAERFVKQTIA----DLLQNRVDLSQLVITKAYSK--QDY--AAKQAHIVLAEK 861

Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
            +++    +  + GD V Y+I            G     +  D L   +    ID++YY  
Sbjct: 862  MRKRDAGSAPTLGDRVAYVII-------NGPAGAKNYDKSEDPLYVLENSLPIDVNYYLE 914

Query: 1259 QQIHPVVSRLCASIEG 1274
             Q+   + R+   I G
Sbjct: 915  NQLSKPLMRIFEPIMG 930


>gi|428671655|gb|EKX72573.1| DNA polymerase alpha catalytic subunit, putative [Babesia equi]
          Length = 755

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 161/584 (27%), Positives = 261/584 (44%), Gaps = 71/584 (12%)

Query: 285 LNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVD-----DDGSLPFYI 339
           L+     E DP L  + G  E S    ++ +        E    +D     ++  +P Y+
Sbjct: 194 LDGVAEAEIDPSLIESFGEVESSQVETMVSQSSDVQPSDEEVVNIDAIKTENESDIPLYL 253

Query: 340 LDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLF--QTDEIM 395
           LD    L     G L+LFG++    G    SC V VKN+ RC++  P   L   +T EI 
Sbjct: 254 LD----LCEGPAGNLHLFGRILSNKGENTESCMVTVKNVMRCLFFKPRMELMFTETGEIT 309

Query: 396 KLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY-AFGQAEI 454
            +  D    + +P+  R  +++       E+     +  +   +   VKR+   +G    
Sbjct: 310 DMLVDGVVLKGNPLFERHLMKN----FYNEMEVLRKDYGIKKIMYKLVKRKLLKYG---- 361

Query: 455 PAGENYVLKINYPFKDPPL-PADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKF 513
           P+ E   +K+ YP+  P L      G  +  + G +S   ELFLVKRK+KGPSWL +   
Sbjct: 362 PSTEELYIKVCYPYAFPQLGKHHFSGTCYSDVYGVNSPITELFLVKRKIKGPSWLRLR-- 419

Query: 514 SSCPAPQRVSWCKYEITVDSPKDIR--VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
            +  + Q +S CK E+ V+S K +   VS  S+ +A VP +++ AI++KT F    +  E
Sbjct: 420 GAVVSSQNLSTCKVELEVESHKSVSLWVSKDSEEIA-VPQISIAAISVKTCF-VTPNQPE 477

Query: 572 IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGS 631
           I   ++V   K  ID  M   E K     + F  +RKL    +P       + R      
Sbjct: 478 IFEIAMVYNKKCSIDD-MSVKEVKSD---NQFIGIRKLPSFQWPKEMKAFLSKRP----- 528

Query: 632 NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
                   ER +L   M  L  +D DV+V H+     L+ LL R     +P         
Sbjct: 529 -YFRIYEQERGMLAHFMKFLETIDPDVVVSHDTHQLVLETLLKRCNALNIP--------- 578

Query: 692 LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL-----REVSYSLTQLA 746
             R    +L+ G+ +     +P      AGRL CDT + +++L       ++S  +  L 
Sbjct: 579 -LRVSFSRLKLGKKM----TTP----FTAGRLFCDTRMLTKELYPGRGNYDLSACVYDLV 629

Query: 747 KTQLNKD-----RKEVGPHDVLKMF----QTLESLMELIEYGETDAWLSMELMFHLSVLP 797
                KD     R      +V + F     ++++L+ + +     A  S  L+  +  LP
Sbjct: 630 TKAPPKDSNFYTRNAFTMGEVKRCFGDAPDSMKNLLVMAQANSKFALDSFNLLLKIQALP 689

Query: 798 LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
           LT++LTNI+GN W +++Q AR++R ++LL+H F   KYI+   F
Sbjct: 690 LTKELTNIAGNTWNRSIQCARSERNDFLLMHEFHRHKYILDHTF 733


>gi|238883420|gb|EEQ47058.1| DNA polymerase delta catalytic subunit [Candida albicans WO-1]
          Length = 849

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 196/816 (24%), Positives = 358/816 (43%), Gaps = 133/816 (16%)

Query: 497  LVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTA 556
            ++  K+ G SW+++ +        ++S C+ E ++D  +D+          ++ P+ + +
Sbjct: 1    MIDCKITGMSWITLPRDKYKIVNNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRILS 59

Query: 557  INL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
             ++     K VF + +    I  A+VV             S   KP + + FTV      
Sbjct: 60   FDIECAGRKGVFPEAEHDPVIQIANVV-----------QKSGESKPFVRNVFTV------ 102

Query: 612  GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
                          +S  GS +   +  E  L++     + K+D DV++G+N + FD+  
Sbjct: 103  -----------NTCSSIIGSQIFEHQREEDMLMHWKEF-ITKVDPDVIIGYNTANFDIPY 150

Query: 672  LLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF 728
            +L+RA+   +    +   GRLKR    K      +F S   G     +  I GR+  D  
Sbjct: 151  VLNRAKALGLND--FPFFGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDLL 205

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLS 786
               +   +  SY+L  ++   L + +++V  H ++   Q  T E+   L  Y   DA+L 
Sbjct: 206  QFIQREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFLP 264

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKE 846
            + L+  L  L    ++  ++G  +   L  +R Q+++ ++   FR               
Sbjct: 265  LRLLDKLMCLVNYTEMARVTGVPFSYLL--SRGQQIK-VISQLFR--------------- 306

Query: 847  TKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDK 906
             K  +       ED  +  L +E +N                  Y G  V+EP++G YD 
Sbjct: 307  -KCLQ-------EDIVIPNLKSEGSN----------------EEYEGATVIEPERGYYDV 342

Query: 907  YILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTGV 950
             I  LDF+SLYPSI+  +N+C+TT+                 ++P+G    + S+   G+
Sbjct: 343  PIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDY-FVHSNLRKGI 401

Query: 951  LPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            LP +L  L+  R+  K  +K  +   K   L+ +Q ALK++ANS+YG  G +  +     
Sbjct: 402  LPTILDELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLA 461

Query: 1010 LAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
            ++  +T  GRE++  T + VQ        +  + +VIYGDTDS+M+  G  D+     + 
Sbjct: 462  ISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLG 521

Query: 1062 GKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
             +    V+ K+K  ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRR
Sbjct: 522  EEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVRR 579

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            D   L + V    L  IL ER        +  ++     D+   ++ L + VITK  +K 
Sbjct: 580  DNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK- 634

Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
               +  +  Q HV++A R+++    +  + GD V Y+I          + G     +  D
Sbjct: 635  ---HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSED 683

Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
             L   +    ID+ YY  QQ+   + R+   I G +
Sbjct: 684  PLYVLENSLPIDVKYYLDQQLTKPLERIFIPILGET 719


>gi|326473539|gb|EGD97548.1| DNA polymerase family B [Trichophyton tonsurans CBS 112818]
          Length = 1085

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 189/744 (25%), Positives = 327/744 (43%), Gaps = 127/744 (17%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +  +K+   P  Q  S C+ E +V   +D+    +    A++ P+ 
Sbjct: 255  FMIDTGISGMSWVEVPAAKYEVLPPGQCQSNCQIEASVHY-RDMIAHPNDGEWAKMAPL- 312

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCC-HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGG 612
                              I+S  + C   K     P +    +   +++ +   +     
Sbjct: 313  -----------------RILSFDIECAGRKGIFPEPNIDPVIQIANIVTRYGESKPFVRN 355

Query: 613  IFPMGFNKEATDRNSKAGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDV 671
            +F M         +S   + VL  +  E  L+  R  +E  K+D DV++G+NI+ FD   
Sbjct: 356  VFVMD------TCSSIVNTQVLEFDKEENMLMAWRDFVE--KVDPDVIIGYNIANFDFPY 407

Query: 672  LLHRAQVCR-VPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
            LL RA+    +    WS++  ++          +T F S   G      +   GR+  D 
Sbjct: 408  LLDRARYLNCLKFPYWSRLKGVQS------HATKTSFASKQMGKRDSKATNTNGRIQLDL 461

Query: 728  F-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
              L  RD  LR  SY+L  +    L + +++V    + +++  T +S   L  Y   DA+
Sbjct: 462  LQLVQRDHHLR--SYTLNSVCAEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 519

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   LM  L  L    ++  ++G  +   L  AR Q+++++  L      +K ++PD   
Sbjct: 520  LPQRLMDKLMCLVNYTEMARVTGVPFNFLL--ARGQQIKFISQLFRKALEQKLVIPD--- 574

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                            ND + N          Y G  V+EP + 
Sbjct: 575  ------------------------------LKNDDNSNQQ--------YEGATVIEPVRD 596

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLVP-----HLPSSK 946
             Y   I  LDF SLYPSIIQ +N+C+TT           +E+  D +V         +  
Sbjct: 597  YYPVPIATLDFASLYPSIIQAHNLCYTTLLNKRTVEKLGLEKDEDYIVTPNDDMFCTAKV 656

Query: 947  TTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +N + 
Sbjct: 657  RKGLLSQILEELLTARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGITGATNGKL 716

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
                +A   T  GR+++  T D V+    +        +VIYGDTDS+M+  G  D+A+A
Sbjct: 717  PCLAIASSTTSYGRQMIEKTKDEVEARYTISNGYSHDAKVIYGDTDSVMVKFGTTDLAEA 776

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + + + Y+ ++ KG++
Sbjct: 777  MKLGEEAAGFVSSKFMKPIKLEFEKVYYPYLLINKKRYAG--LYWTNPVKYDKMDTKGIE 834

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD  LL + V +  L++IL +R+       + N    +  D+   +V + K VITK 
Sbjct: 835  TVRRDNCLLVQTVIETVLNKILIDRNVNGAETYVKN----IISDLLQNKVDMSKLVITKA 890

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLK 1200
            LTK  E Y     Q HV++  R K
Sbjct: 891  LTK--EEY--TGKQAHVELVERAK 910


>gi|807830|dbj|BAA07580.1| DNA polymerase [Pyrodictium occultum]
          Length = 803

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 175/685 (25%), Positives = 309/685 (45%), Gaps = 116/685 (16%)

Query: 625  RNSKAGSNVLCCES-SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
            R+S+    ++  E   +R +L   +  +   D D++VG+N + FD   L+ RA+   +  
Sbjct: 210  RDSEGKERLIEAEGHDDRRVLREFVEYVRAFDPDIIVGYNSNHFDWPYLMERARRLGIKL 269

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
             +  ++G    +         +++G          + GRL  D +  + ++      +L 
Sbjct: 270  DVTRRVGAEPTT---------SVYGH-------VSVQGRLNVDLYDYAEEMPEIKMKTLE 313

Query: 744  QLAKTQ--LNKDRKEVGPHDVLKMFQTLESLMELIE-YGETDAWLSMELMFHLSVLPLTR 800
            ++A+    + K  + +     +  +   E   +L+E Y   D   +  L   +  LP   
Sbjct: 314  EVAEYLGVMKKSERVIIEWWRIPEYWDDEKKRQLLERYALDDVRATYGLAEKM--LPFAI 371

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            QL+ ++G    +        R+E+ L+ A      +VP+                     
Sbjct: 372  QLSTVTGVPLDQVGAMGVGFRLEWYLMRAAYDMNELVPN--------------------- 410

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                  R  +RG +Y G +VL+P KG+++  +++LDF+S+YPSI
Sbjct: 411  ----------------------RVERRGESYKGAVVLKPLKGVHEN-VVVLDFSSMYPSI 447

Query: 921  IQEYNICFTTVERSPDGL-----------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            + +YN+   T+   P              V H       G    +L+NL++ RR VK  M
Sbjct: 448  MIKYNVGPDTIVDDPSECPKYGGCYVAPEVGHRFRRSPPGFFKTVLENLLKLRRQVKEKM 507

Query: 970  K--TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
            K       + +  D +Q+ALK+ AN+ YG +G+S++R+Y K  AE +T  GR ++ + ++
Sbjct: 508  KEFPPDSPEYRLYDERQKALKVLANASYGYMGWSHARWYCKRCAEAVTAWGRNLILTAIE 567

Query: 1028 LVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRML 1087
              +  L L+VIYGDTDS+ +   + D  K +    K+I+ V K+    EI +D +YK++ 
Sbjct: 568  YAR-KLGLKVIYGDTDSLFV---VYDKEKVE----KLIEFVEKEL-GFEIKIDKIYKKVF 618

Query: 1088 LLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
              + KK+Y  +    +DG     I+  G + VR DW  L+KEV +     +L+  + +  
Sbjct: 619  FTEAKKRYVGL---LEDGR----IDIVGFEAVRGDWCELAKEVQEKAAEIVLNTGNVDKA 671

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +  I     +V + +R G+V + K +I KTL+K  E Y    + PHV  A R+K++GY  
Sbjct: 672  ISYIR----EVIKQLREGKVPITKLIIWKTLSKRIEEY--EHDAPHVMAARRMKEAGYE- 724

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
              S GD V Y+I   +G+ S SS         P           ID++YY   QI P   
Sbjct: 725  -VSPGDKVGYVIV--KGSGSVSSRAYPYFMVDPS---------TIDVNYYIDHQIVPAAL 772

Query: 1267 RLCASIEGTSPERLADCLGLDPSKF 1291
            R+ +   G + ++L     +  S F
Sbjct: 773  RILSYF-GVTEKQLKAAATVQRSLF 796


>gi|78191525|gb|ABB29977.1| DNA-directed polymerase delta 1 [Homo sapiens]
          Length = 1133

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 178/668 (26%), Positives = 305/668 (45%), Gaps = 101/668 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED       +   
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGEDYT---GATVIG 588

Query: 882  HRKGKRGPAYAGG----LVLEPKKG-----LYDKYILLLDFNSLYPSIIQEYNICFTTVE 932
              KG R    AG     L L P +G      YD  I  L F+SLYPSI+  +N+C+TT+ 
Sbjct: 589  PLKGVRPQDRAGAAWELLALTPGRGCSPPRYYDVPIATLGFSSLYPSIMMAHNLCYTTLL 648

Query: 933  R----------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGL 975
            R                +P G    + +S   G+LP++L+NL+  R+  K  + K    L
Sbjct: 649  RPGTAQKLGLTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPL 707

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            + Q LD +Q  LK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +
Sbjct: 708  RRQVLDGRQLGLKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTV 767

Query: 1036 E--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRM 1086
            E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   
Sbjct: 768  ENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPY 827

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  
Sbjct: 828  LLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGA 886

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +
Sbjct: 887  VAHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGS 940

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
              S GD VPY+I         ++ G+A   +  D L   +    ID  YY  QQ+   + 
Sbjct: 941  APSLGDRVPYVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLL 993

Query: 1267 RLCASIEG 1274
            R+   I G
Sbjct: 994  RIFEPILG 1001


>gi|163916151|gb|AAI57513.1| Unknown (protein for MGC:180510) [Xenopus (Silurana) tropicalis]
          Length = 911

 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 284/606 (46%), Gaps = 93/606 (15%)

Query: 626  NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
            +S  GS VLC +  E ALL      +  +D D++ G+NI  FD+  L++RAQ  +VP+  
Sbjct: 366  SSIVGSQVLCFDR-EDALLKAWADFVRTIDPDIITGYNIQNFDMPYLINRAQTLKVPN-- 422

Query: 686  WSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---S 739
            +  +GR+ RS    +R     F S   G     +    GR+  D     + LLR+    S
Sbjct: 423  FPFLGRI-RSMKSVIRDSS--FQSKQMGRRENKVINTEGRVQFDLL---QVLLRDYKLRS 476

Query: 740  YSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLP 797
            Y+L  ++   L + +++V  H ++   Q    ++   L  Y   DA+L + LM  L  + 
Sbjct: 477  YTLNAVSFHFLQEQKEDVQ-HSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLMEKLMCVI 535

Query: 798  LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHG 857
               ++  ++G      L   +  +V   LL     +  ++P     VK         + G
Sbjct: 536  NYMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP----VVK---------SEG 582

Query: 858  VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLY 917
             ED                              Y G  V+EP KG YD  I  LDF+SLY
Sbjct: 583  GED------------------------------YTGATVIEPLKGYYDVPIATLDFSSLY 612

Query: 918  PSIIQEYNICFTTVERSPD----GLVPH-----------LPSSKTTGVLPELLKNLVQRR 962
            PSI+  +N+C+TT+ +S      GL P            + +S   G+LPE+L+NL+  R
Sbjct: 613  PSIMMAHNLCYTTLLQSGSIDKYGLSPEDFIKTPTGDCFVKASIRKGLLPEILENLLCAR 672

Query: 963  RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
            +  KT +K  +   K + LD +Q ALK++ANS+YG  G    +     +++ +T  GR++
Sbjct: 673  KRAKTELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 732

Query: 1022 LRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK 1073
            +  T  LV++   L+        VIYGDTDS+M   G+  + +   I  +  + V+  + 
Sbjct: 733  IEKTKQLVESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVGETMEIGREAAEWVSSHFT 792

Query: 1074 -CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
              ++++ + +Y   LL+ KK+YA +         ++ ++ KG++ VRRD   L   + + 
Sbjct: 793  PPIKLEFEKVYFPYLLINKKRYAGLYFS-SSANTHDKMDCKGIETVRRDNCPLVANLINT 851

Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
            CL +IL +R     VE   +    V  D+   ++ + + VITK LT+  + Y  A  Q H
Sbjct: 852  CLQKILIDRDPMGAVEHAKD----VISDLLCNRIDISQLVITKELTRTADEY--AGKQAH 905

Query: 1193 VQVALR 1198
            V++A R
Sbjct: 906  VELAER 911


>gi|384248668|gb|EIE22151.1| DNA polymerase delta subunit one [Coccomyxa subellipsoidea C-169]
          Length = 1116

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 169/665 (25%), Positives = 298/665 (44%), Gaps = 63/665 (9%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            G+ V+  +  E  LL R    + + D D+++G+NI  FDL  L+ RA+  +V    +   
Sbjct: 353  GAEVMSFDKEE-DLLKRWRDLVIETDPDIIIGYNICNFDLPYLIKRAETLKVHDFPYWGR 411

Query: 690  GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
             R  R  M   +     +G+     I   I GR+  D  +  +   +  SYSL  ++   
Sbjct: 412  NRKMRLRMRDAQFSSKAYGTREYKEIT--IDGRIQFDLLVALQRDHKLSSYSLNAVSAYF 469

Query: 750  LNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
            L + +++V  H ++   Q         E     A   ++  +H + + LT +      N+
Sbjct: 470  LGEQKEDVH-HSIISDLQAGNE-----ETRRRLAVYCLKARYHCADMALTHR------NM 517

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
                L      ++ Y+  +   A+   VP  F   +   + K  S    + R    L   
Sbjct: 518  QDAYLPQRLVDKLMYMYNYIEMARVTGVPMSFLLTRGQSI-KVFSQILRKARQKNLLVPN 576

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                   T          G AY G  VL+ K+G Y   +  LDF SLYPSI+  +N+C++
Sbjct: 577  QPRMQGATGD--------GVAYEGATVLDAKQGFYKTPVATLDFASLYPSIMMAHNLCYS 628

Query: 930  TV-------ERSPDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK 976
            T+       E SP+ ++        + +++  G+LPE+L+ L+  R+  K  +K AS   
Sbjct: 629  TLLPPDRVKELSPEDVLRCPTGHCFVRAARAKGILPEILEELLGARKRAKADLKAASDPF 688

Query: 977  IQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL-- 1033
            ++  LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T  LV+     
Sbjct: 689  MKAVLDGRQLALKVSANSVYGFTGAVIGKMPCLEISASVTAFGRNMIDHTKKLVEERYQR 748

Query: 1034 ------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                  + +VIYGDTDS+M+H  + DI +A  +  +    V+K + K ++++ + +YK  
Sbjct: 749  KNGYEADCDVIYGDTDSVMVHFRVKDIGRAMELGREAADFVSKTFVKPIKLEFEKVYKPY 808

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L + V   CL  IL     E  
Sbjct: 809  LLINKKRYAGLLYTKPDK--YDKMDTKGIETVRRDNCQLVRTVVSTCLEMILINEDEEGA 866

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD---AKNQPHVQVALRLKQSG 1203
               +  ++     D+   ++ L   VITK  T+   +  D   A  Q HV++A ++++  
Sbjct: 867  KAYVRATI----SDLLMNRLDLSLLVITKARTQSALSRADTAYAAKQGHVELAKKMRKRD 922

Query: 1204 YSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHP 1263
             +T  + GD V Y+          ++ G+    +  D +   +    ID  +Y    +  
Sbjct: 923  PATAPTVGDRVAYV-------HIKAAKGVKAYDKAEDPIYALEHNLPIDFQHYLDHHLEQ 975

Query: 1264 VVSRL 1268
             + RL
Sbjct: 976  PLQRL 980


>gi|378726376|gb|EHY52835.1| DNA polymerase delta subunit 1 [Exophiala dermatitidis NIH/UT8656]
          Length = 1107

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 207/828 (25%), Positives = 355/828 (42%), Gaps = 138/828 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   + G SW+ +   K+   P+  R S C+ E +    +D+         A++ P+ 
Sbjct: 251  FMIDTGITGMSWVEVPPQKYHVLPSYDRQSNCQIEASCHY-RDLIAHGHDGEWAKMAPL- 308

Query: 554  VTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGI 613
                              I+S  + C  +  I       E  +  ++    VV K  G  
Sbjct: 309  -----------------RILSFDIECAGRKGI-----FPEANQDPVIQIANVVTKY-GDS 345

Query: 614  FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
             P   N    D  S   +  +    SE  +L      L K+D DV++G+NI+ FD   LL
Sbjct: 346  KPFIRNVFVLDTCSLIVNTQIYEHDSESKMLMAWRDFLEKVDPDVIIGYNIANFDFPYLL 405

Query: 674  HRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF- 728
             RA+  ++     WS++    +S + + +   T F S   G      +   GR+  D   
Sbjct: 406  DRAKHLKLQKFPYWSRL----KSVVSQAKD--TNFSSKQMGNRDTKATNTNGRIQLDLLQ 459

Query: 729  LCSRD-LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLS 786
            L  RD  LR  SY+L  +    L + +++V    + ++F  T +S   L  Y   DA+L 
Sbjct: 460  LVQRDHQLR--SYTLNSVCAHFLGEQKEDVHHTMITELFNGTPDSRRRLAVYCLKDAYLP 517

Query: 787  MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYV 844
              LM  L  L    ++  ++G  +   L  +R Q+V+++  L      ++ ++P++    
Sbjct: 518  QRLMDKLMCLVNYTEMARVTGVPFNYLL--SRGQQVKFISQLFRKALEQQLVIPNE---- 571

Query: 845  KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
                                                  R  K    Y G  V+EP +G Y
Sbjct: 572  --------------------------------------RSEKSDEQYEGATVIEPIRGYY 593

Query: 905  DKYILLLDFNSLYPSIIQEYNICFTT------VER-----------SPDGLVPHLPSSKT 947
            D  I  LDF SLYPSIIQ +N+C+TT      +E+           +P+G +    ++K 
Sbjct: 594  DVPIATLDFASLYPSIIQAHNLCYTTLLTKQIIEKHNMKKDEDYILTPNGDL--FATAKV 651

Query: 948  -TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005
              G+L ++L+ L+  R+  K  +       K   L+ +Q ALK++ANS+YG  G +  + 
Sbjct: 652  RKGLLTQILEELLGARKRAKRELAVEKDPFKKAVLNGRQLALKISANSVYGLTGATVGKL 711

Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKA 1057
               P+A   T  GR+++  T   V+    +        +VIYGDTDS+M+  G  D+ K 
Sbjct: 712  PCLPIASSTTAYGRQMIEKTKHEVEQKYTIANGYSHDAQVIYGDTDSVMVKFGEKDLRKV 771

Query: 1058 KAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLD 1116
              +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +     D   Y+ ++ KG++
Sbjct: 772  MELGQEAADFVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWTNPD--KYDKMDTKGIE 829

Query: 1117 MVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKT 1176
             VRRD   L + V +  L +IL +R  +   + +  ++  + ++    +V L   VITK 
Sbjct: 830  TVRRDNCRLVQVVIETVLRKILIDRDLDGAQDYVKETIANLLQN----KVDLSMLVITKA 885

Query: 1177 LTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
            L+K          Q HV++A R+K+    +  + GD V Y+I    G S           
Sbjct: 886  LSKSDY----TAKQAHVELAERMKKRDAGSAPALGDRVAYVIVKGAGGSKNYE------- 934

Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
            +  D +   +    ID  YY   Q+   + R+   I G   ER A+ L
Sbjct: 935  KSEDPIYVLENNVPIDTKYYLDNQLANPLGRIFEPILG---ERRANSL 979


>gi|385805456|ref|YP_005841854.1| family B-type DNA polymerase [Fervidicoccus fontis Kam940]
 gi|383795319|gb|AFH42402.1| family B-type DNA polymerase [Fervidicoccus fontis Kam940]
          Length = 799

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 168/651 (25%), Positives = 293/651 (45%), Gaps = 125/651 (19%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ++  + + + E+ K+D D++ G+NI+ FD + LL RA+   +   +  +IG+        
Sbjct: 222  DKETIKKFIEEVQKIDPDIISGYNINVFDWNYLLQRAKYNGLNLDVTREIGK-------- 273

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDL---LREVSYSLTQLAKTQLNKDRKE 756
                        S      +AGRL  D F  ++++    R+    +++        +R  
Sbjct: 274  --------SPATSTAGHISVAGRLNVDIFDFAQEISEVKRKTLEDISEYMGVMKKDERVL 325

Query: 757  VGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            +  +D+ K++ T  E   +++ Y   D   +  LM     LP   QL+ ++G    + + 
Sbjct: 326  LEWYDIPKLWDTGKEGREKVLRYNRDDVISTYRLMEKF--LPFGIQLSGLTGIPLDQLMA 383

Query: 816  GARAQRVEYLLLH-AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             +   R+EY L+  A+R  + IVP++                  E+R  E          
Sbjct: 384  TSVGYRLEYYLIRKAYRFNE-IVPNR------------------EERERE---------- 414

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER- 933
                           +Y G +VL+PK G+++  I +LDF S+YP+I+ +YN+   T+ + 
Sbjct: 415  ---------------SYKGAIVLKPKSGVHEN-IAVLDFASMYPNIMIKYNVGPDTLVKE 458

Query: 934  --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
                    +PD  V H    +  G    +L +L+  R+ ++  +K       +   LD +
Sbjct: 459  CKNDECYVAPD--VGHKFRKEPPGFFKSVLSDLLAARQKIRQQLKKLKPGDPEYNVLDER 516

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            Q+A+K+ AN+ YG +G+  +R+Y K  AE IT  GR+ +   ++  +  L L+VIYGDTD
Sbjct: 517  QKAIKVLANASYGYMGWQGARWYCKECAEAITAWGRQNITFAIEKAK-KLGLDVIYGDTD 575

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFK 1102
            S+ +     D  K   +   +  E+      LEI +D +YK++   + KK+Y  + +   
Sbjct: 576  SLFVQF---DEKKINELLNIINSELG-----LEIKIDKIYKKLFFTEAKKRYVGITID-- 625

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSK----EVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
                  +I+  G + +R DWS +SK    E+    L +  +E++ E   E I N      
Sbjct: 626  -----NIIDIVGFEAIRGDWSEISKDIQTEIARLILEKGTTEKAIEYTKEIIRN------ 674

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
              ++  ++ ++K VI KT+TKP E Y    + PHV  A +L Q  Y    S GD V Y++
Sbjct: 675  --LKEKKIPIDKLVIWKTITKPIEEY--EVDAPHVTAA-KLYQE-YGLKISPGDKVGYVV 728

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
               +G  S         A   DE         ID+DYY   QI P   R+ 
Sbjct: 729  VSGEGKISEKVK--PYFAATLDE---------IDVDYYVDHQIIPAAMRIL 768


>gi|1706513|sp|P52025.1|DPOL_METVO RecName: Full=DNA polymerase
 gi|495654|gb|AAA72443.1| DNA polymerase [Methanococcus voltae]
          Length = 824

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 180/679 (26%), Positives = 306/679 (45%), Gaps = 130/679 (19%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E+ L+ +  IE+ K   DV+  +N   FD   L  RA +  +    +      ++ ++ K
Sbjct: 231  EKELIQK-TIEILK-QYDVIYTYNGDNFDFPYLKKRANIYEIELD-FDNASNSQQPQIIK 287

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
            + KG  I      PGI+         D +  +R LL    Y L  + +     +++ V  
Sbjct: 288  ISKG-GINRKSKIPGIIHI-------DLYPIARKLLNLTKYKLENVVQELFKINKEAVDY 339

Query: 760  HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
             D+ KM++T ++   L+ Y   DA  + ++  +   LPL    + I       T +   +
Sbjct: 340  GDIPKMWETEDTT--LLRYAYEDALYTYKMGNYF--LPLEIMFSRIVNQPLYDTSRMNSS 395

Query: 820  QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
            Q VE+LLL     +  I P                                    N  S 
Sbjct: 396  QMVEFLLLKRSFEQNMISP------------------------------------NRPSS 419

Query: 880  NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPD 936
            + +R+  +  +Y GG V EP KG+ +  I+ LDF SLYPSI+  +NI   TV   E+  +
Sbjct: 420  SSYRERAKF-SYEGGYVREPLKGIQED-IVSLDFMSLYPSILISHNISPETVIYEEKERE 477

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ---------LDIQQQAL 987
             +          G++P+ L  L+ RR+ +K  +K     KIQ+         L+ +Q+++
Sbjct: 478  NM--------ELGIIPKTLNELLSRRKHIKMLLKD----KIQKNEFDEEYSRLEHEQKSI 525

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            K+ ANS YG L F  +R+Y+   AE++T  GR+ ++ T++  +     +VIY DTD    
Sbjct: 526  KVLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAE-EFGFKVIYADTDGFYA 584

Query: 1048 HSGIDDIAKAKA----------------------IAGKVIQEVNKKY-KCLEIDLDGLYK 1084
                D + K K                       +  K ++ +N++  + +E++ +G +K
Sbjct: 585  KWDYDKLQKGKKEENDKSDKLSNLPKLSKEELIILTKKFLKGINEELPEGMELEFEGHFK 644

Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
            R L + KKKYA ++    DG     I  KGL++VRRDWS ++K+     +  +L +    
Sbjct: 645  RGLFVTKKKYALIE---DDGH----IVVKGLEVVRRDWSNIAKDTQQAVIRALLEDGDVN 697

Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
               + I N++    ++++ G +     +I   LTK  E Y      PH++VA ++KQ G 
Sbjct: 698  LAKKIIKNTI----DNLKKGNIDKNDLLIHTQLTKNIEEYKST--APHIEVAKKIKQRGD 751

Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
            S     GD + YII   +G+ S     I++RA    EL +  G +  DI+YY   Q+ P 
Sbjct: 752  S--VRVGDVISYIIV--KGSRS-----ISERA----ELLEYAGDY--DINYYIDNQVLPP 796

Query: 1265 VSRLCASIEGTSPERLADC 1283
            V R+  S+ G S + L + 
Sbjct: 797  VIRIMESL-GISEDELKNS 814


>gi|347522849|ref|YP_004780419.1| DNA polymerase Pol2 [Pyrolobus fumarii 1A]
 gi|343459731|gb|AEM38167.1| DNA polymerase Pol2 [Pyrolobus fumarii 1A]
          Length = 803

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 173/655 (26%), Positives = 294/655 (44%), Gaps = 124/655 (18%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
            + D D++VG+N + FD   LL RA++  +   +  ++G    +         ++ G  + 
Sbjct: 238  RYDPDIIVGYNNNHFDWPYLLRRARILGIKLDVTRRVGAEPTT---------SVHGHVSV 288

Query: 713  PGIMSCIAGRLLCDTFLCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            PG       RL  D +  + ++       L EV+  L  + K++    R  +   ++   
Sbjct: 289  PG-------RLNVDLYDYAEEMPEIKIKSLEEVAEYLGVMKKSE----RVIINWWEIPDY 337

Query: 766  FQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
            +   +    L++Y   D   +  L     +LP   QL+ ++G    +    +   R+E+ 
Sbjct: 338  WDDPKKRPLLLQYARDDVRATYGLA--EKILPFAIQLSYVTGLPLDQVGAMSVGFRLEWY 395

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L+ A    K +VP++    +ET                                      
Sbjct: 396  LIRAAFKMKELVPNRVERPEET-------------------------------------- 417

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------------ 933
                 Y G +VLEP +G+++  I +LDF+S+YP+I+ +YN+   T+ R            
Sbjct: 418  -----YRGAIVLEPLRGVHEN-IAVLDFSSMYPNIMIKYNVGPDTLVRPGEECGECGCWE 471

Query: 934  SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTA 991
            +P+  V H       G    +L+ L++ R+ V+  MK       + + LD +Q+ALK+ A
Sbjct: 472  APE--VKHRFRRCPPGFFKTVLERLLELRKRVRAEMKKYPPDSPEYRLLDERQKALKVLA 529

Query: 992  NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGI 1051
            N+ YG +G+S +R+Y +  AE +T  GR ++R+ +++ +  L L+VIYGDTDS+ +    
Sbjct: 530  NASYGYMGWSGARWYCRECAEAVTAWGRHLIRTAINIAR-KLGLKVIYGDTDSLFVTYDP 588

Query: 1052 DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVI 1110
            + + K      K+I+E        EI L+ +YKR+   + KK+YA +    +DG     I
Sbjct: 589  EKVEKFI----KIIEE----ELGFEIKLEKVYKRVFFTEAKKRYAGL---LEDGR----I 633

Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
            +  G + VR DW  L+KEV    +  +L        VE +     K+ +++  G+V +EK
Sbjct: 634  DIVGFEAVRGDWCELAKEVQTKVVEIVLKTSDVNKAVEYVR----KIVKELEEGKVPIEK 689

Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
             VI KTL+K  E Y      PHV  A R+  +GY    S GD + Y+I    G       
Sbjct: 690  LVIWKTLSKRLEEY--TTEAPHVVAAKRMLSAGYR--VSPGDKIGYVIVKGGGR------ 739

Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
             I+QRA  P  + K   +  ID+ YY   QI P   R+      T  +  A   G
Sbjct: 740  -ISQRA-WPYFMVKDPSQ--IDVTYYVDHQIIPAALRILGYFGITEKKLKASATG 790


>gi|324120696|dbj|BAJ78739.1| DNA polymerase delta catalytic subunit [Epiophlebia superstes]
          Length = 1007

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 169/668 (25%), Positives = 307/668 (45%), Gaps = 101/668 (15%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEM 697
            ER LL +    + ++D D+  G+NI+ FDL  L++RA+   + +  +  +GR+K  +S +
Sbjct: 272  ERELLEKWADFVREVDPDLFTGYNINNFDLPYLINRAK--HLNAKNFYFLGRIKDIKSVI 329

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDR 754
             +        G   +  I +   GR+  D  +    LLRE    SY+L  ++   L + +
Sbjct: 330  KEQIMQNKQMGRRENKSINT--EGRVPFDLLMV---LLREYKLRSYTLNAVSYHFLQEQK 384

Query: 755  KEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGK 812
            ++V  H ++   Q    ++   L  Y   DA+L + L+  L  +    ++  ++G     
Sbjct: 385  EDVQ-HSIISDLQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVPLSC 443

Query: 813  TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
             L   +  +V   LL   + K +++P   TY           +  V+D   E        
Sbjct: 444  LLTRGQQIKVVSQLLRKGKEKDFVIP---TY-----------SGAVQDEQFE-------- 481

Query: 873  FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV- 931
                                G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT+ 
Sbjct: 482  --------------------GATVIEPLRGYYADPITTLDFSSLYPSIMMAHNLCYTTLL 521

Query: 932  ---------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-L 975
                            ++P G    +  S   G+LPE+L+NL+  R+  K  +K  +  L
Sbjct: 522  QPGTKEKLGLSTDQYAKTPSGNF-FVRESVRKGLLPEILENLLSARKKAKNELKEETDPL 580

Query: 976  KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            + + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+    +
Sbjct: 581  RRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRAMIEQTKQEVEAKYCI 640

Query: 1036 E--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                     VIYGDTDS+M+  G+  + +A  +  +  + V+ K+ K ++++ + +Y   
Sbjct: 641  SKGYTHDAIVIYGDTDSVMVKFGVKTLEEAMELGKEAAEYVSSKFVKPIKLEFEKVYFPY 700

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L   + + CL ++L +R  +  
Sbjct: 701  LLINKKRYAGLYFTRPDK--YDKMDCKGIETVRRDNCPLVANMMNTCLQKLLIDRDPDGA 758

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            V        +V  D+   ++ + + V+TK L K  + Y  A  Q HV++A ++++    T
Sbjct: 759  VAYAK----QVIADLLCNRIDISQLVVTKELAK--QDY--ASKQAHVELANKMRKRDPGT 810

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD VPY++       + ++ G     +  D +   +    ID +YY   Q+   + 
Sbjct: 811  APKLGDRVPYVL-------TAAAKGTPAYMKAEDPIYVLENSIPIDCNYYLENQLSKPLL 863

Query: 1267 RLCASIEG 1274
            R+ + I G
Sbjct: 864  RIFSPILG 871


>gi|384483568|gb|EIE75748.1| hypothetical protein RO3G_00452 [Rhizopus delemar RA 99-880]
          Length = 233

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/259 (41%), Positives = 148/259 (57%), Gaps = 45/259 (17%)

Query: 750 LNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
           L+ +R EV  H   K ++    +M L+ +G  DA+L + +   L +L L++QLT ++GNL
Sbjct: 4   LDIERYEVDLHHPTKHYRNSLDIMNLVYHGSFDAYLVLSIALKLQILSLSKQLTKLAGNL 63

Query: 810 WGKTLQG-ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV---EE 865
           W  ++ G AR  R +YLLLHAF   ++I PDK                   DR V   ++
Sbjct: 64  WSTSINGGARTDRNDYLLLHAFYKNQFICPDK------------------RDRRVNSKQD 105

Query: 866 LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
            T ED    N++S            ++GGLVLEPK GLY KY+LLLDFNSLYPSIIQEYN
Sbjct: 106 STEEDIIKQNESS------------FSGGLVLEPKPGLYKKYVLLLDFNSLYPSIIQEYN 153

Query: 926 ICFTTV--------ERSPDGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMK--TASG 974
           +C TT+        E S D +   + S S+  G+LP+L++  VQRR+ VK  MK  T S 
Sbjct: 154 VCHTTMNLQKIGANETSMDMIAQEMLSESQRIGILPKLVRKFVQRRQQVKKAMKDPTISD 213

Query: 975 LKIQQLDIQQQALKLTANS 993
            +  Q DI+Q+ALK TAN+
Sbjct: 214 SQRNQYDIEQKALKGTANN 232


>gi|357613119|gb|EHJ68324.1| DNA polymerase delta catalytic subunit [Danaus plexippus]
          Length = 974

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 175/681 (25%), Positives = 303/681 (44%), Gaps = 94/681 (13%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
             GS V   +S E  +L++      +LD+D++ G+NI  FD   L++RA+  +V    +  
Sbjct: 235  VGSQVFSFQS-EAEMLSKWSDFFRELDADIITGYNICNFDWPYLINRAKHLKV--DCFDF 291

Query: 689  IGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
            +GR+K  RS +          G   +  I     GR+  D  L      +  SY+L  ++
Sbjct: 292  LGRIKNIRSVIKDTILQSKQMGRRENKSIN--FEGRVPFDLLLVLVRDYKLRSYTLNAVS 349

Query: 747  KTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
               L + +++V  H ++   Q    ++   L  Y   DA+L ++L+  L  +    ++  
Sbjct: 350  YHFLQEQKEDVH-HSIISDLQNENEQTRRRLAMYCLKDAYLPLKLLNKLMCIINYIEMAR 408

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   +   Y++P                + G ED+   
Sbjct: 409  VTGVPLLCLLTRGQQIKVVSQLLRKSKGAGYLMP-------------AYHSQGSEDQ--- 452

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                      + G  V+EPKKG Y   I  LDF SLYPSI+  +
Sbjct: 453  --------------------------FEGATVIEPKKGYYADPISTLDFASLYPSIMMAH 486

Query: 925  NICFTTVE----------RSPDGLVP-----HLPSSKTTGVLPELLKNLVQRRRMVKTWM 969
            N+C+TT+            S D  V       + + K  G+LPE+L++L+  R+  K  +
Sbjct: 487  NLCYTTLVPPNIQKEINLNSDDVTVTPSNNMFVKAHKRKGLLPEILESLLAARKKAKADL 546

Query: 970  KTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
            K     LK   LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   
Sbjct: 547  KEEKDPLKRSVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEFTRAE 606

Query: 1029 VQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDL 1079
            V+           +  VIYGDTDS+M+  G+  + ++  +  +  + V  K+ K ++++ 
Sbjct: 607  VEKKYTKSNGYKEDAVVIYGDTDSVMVKFGVKTLEESMELGREAAEFVTSKFVKPIKLEF 666

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            + +Y   LL+ KK+YA   + F     Y+ ++ KG++ VRRD   L   +   CL ++L 
Sbjct: 667  EKVYYPYLLINKKRYAG--LYFTKPEKYDKMDCKGIETVRRDNCPLISNMMSTCLQKLLI 724

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            +R  +  +    N   ++  D+   ++ + + VITK LTK       A  Q HV++A ++
Sbjct: 725  DRDPDGAI----NYAKQMISDLLCNRIDISQLVITKELTKNDY----AAKQAHVELANKM 776

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K+    T    GD VPY++C     S+  +     +A  P  +   +    ID +YY   
Sbjct: 777  KKRDAGTAPKLGDRVPYVLC-----SAAKNTPAYMKAEDP--IYVLENSVPIDFNYYLEN 829

Query: 1260 QIHPVVSRLCASIEGTSPERL 1280
            Q+   + R+   I G   E L
Sbjct: 830  QLSKPLLRIFEPILGEKAESL 850


>gi|367016721|ref|XP_003682859.1| hypothetical protein TDEL_0G02810 [Torulaspora delbrueckii]
 gi|359750522|emb|CCE93648.1| hypothetical protein TDEL_0G02810 [Torulaspora delbrueckii]
          Length = 1094

 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 212/872 (24%), Positives = 375/872 (43%), Gaps = 150/872 (17%)

Query: 450  GQAEIPAGENYVLKINYPFKDPPLPADLKGE-NFCSLLGTHSSALE------LFLVKRKV 502
            G +++P  + YV   N  F +    A  KG  ++ S  GT ++  +        ++   +
Sbjct: 204  GDSKLPFYKIYVTHPN--FVNKLRTAFEKGHLSYKSWFGTGTTTYDNIAYTLRLMIDCGI 261

Query: 503  KGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLK 560
             G SW+++  +K+   P  +RVS C+ E+ ++  +D+    +    +   P+ + + +++
Sbjct: 262  VGMSWITLPKNKYQLIPENERVSSCQIEVRINY-RDLVAHPAEGEWSHSGPLRILSFDIE 320

Query: 561  T-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
                  VF + Q    I  A+V+    AK           KP + + FTV     G    
Sbjct: 321  CAGRVGVFPEPQHDPVIQIANVMSIAGAK-----------KPFVRNVFTV-----GSCAA 364

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
            +             GS V     SE  +L      +   D DV++G+N S FD   L+ R
Sbjct: 365  I------------TGSQVFP-HDSEEDMLKHWRDFVVAADPDVIIGYNTSNFDFPYLIDR 411

Query: 676  AQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
            A+  ++ +  +   GRLK  + E+ +       +G+  S  +   I GRL  D     + 
Sbjct: 412  AKALKIET--FPYFGRLKFVKQEVKEAIFSSKAYGTRESKNV--NIDGRLQLDLLQFVQR 467

Query: 734  LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMF 791
              +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+L + LM 
Sbjct: 468  EYKLRSYTLNAVSAHFLGEQKEDVH-YSIITSLQNGDSETRRRLAVYCLKDAYLPLRLME 526

Query: 792  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAK 851
             L  L    ++  ++G  +   L   +  +V   L       + ++P+         M  
Sbjct: 527  KLMALVNYTEMARVTGVPFSYLLSRGQQIKVVSQLFRKCMEIETVIPN---------MQS 577

Query: 852  QRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLL 911
            Q S+                                   Y G  V+EP +G YD  I  L
Sbjct: 578  QGSDE---------------------------------QYEGATVIEPIRGYYDIPIATL 604

Query: 912  DFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT-TGVLPE 953
            DFNSLYPSI+  +N+C+T      TV+R           +P+G   +  +SK   G+LP 
Sbjct: 605  DFNSLYPSIMMAHNLCYTTLCNKATVDRMKLKQEEDYIITPNG--DYFVTSKLRRGILPI 662

Query: 954  LLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
            +L  L+  R+  K  +K      K   L+ +Q ALK++ANS+YG  G +  +     ++ 
Sbjct: 663  ILDELISARKRAKKDLKNEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISS 722

Query: 1013 LITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
             +T  GRE++  T   V+    ++        V+YGDTDS+M+  G +D+ +A  +  + 
Sbjct: 723  SVTSFGREMIMLTKKSVEEKYCVKNGFKHDAVVVYGDTDSVMVKFGTNDLKEAMDLGAEA 782

Query: 1065 IQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWS 1123
               V+  +K  + ++ +  Y   LL+ KK+YA   + +     Y+ +++KGL  VRRD  
Sbjct: 783  AAYVSTLFKHPINLEFEKAYFPFLLINKKRYAG--LFWTSPEKYDKLDQKGLASVRRDSC 840

Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
             L   V +  L +IL +R  +  +  +  ++    +D+   +  + K +I+KTL      
Sbjct: 841  PLVSIVMNKVLKRILIQRDVDGALAFVKKTI----DDILHNRADISKLIISKTLA----- 891

Query: 1184 YPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
             P+  N QPH  +  R+K+     G + GD V Y+I        G +  +  RA  P  L
Sbjct: 892  -PNYTNPQPHAVLTERMKKRD-GVGPNVGDRVDYVIM-------GGNDKLYNRAEDP--L 940

Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
               +    ID  YY + Q+   +  + A I G
Sbjct: 941  YVLEHNIQIDSRYYLTNQLQNPLISIIAPIIG 972


>gi|189207907|ref|XP_001940287.1| DNA polymerase delta catalytic subunit [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187976380|gb|EDU43006.1| DNA polymerase delta catalytic subunit [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1115

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 195/820 (23%), Positives = 350/820 (42%), Gaps = 131/820 (15%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   V G  W+    SK+      +R S C++E  V   KD+   SS    A++ P+ 
Sbjct: 252  FMIDTSVTGMCWVEAPASKYRMINPRERHSNCQFEAQVHY-KDLIAHSSEGEWAKLAPLR 310

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            V + +++    K      +V+ ++  + V     +          +KP + + F +    
Sbjct: 311  VLSFDIECAGRKGIFPEANVDPVIQIANVVTRYGE----------QKPFVRNVFCL---- 356

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                          D  S   S  +    SE  +L +    + ++D DV++G+NI+ FD 
Sbjct: 357  --------------DTVSPIVSTEIFSYQSEGEMLMKWRDFVEQVDPDVIIGYNINNFDF 402

Query: 670  DVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
              LL RA+  ++     W+++  ++          + +   G      +   GRL  D  
Sbjct: 403  PYLLDRAKHLKLQKFPYWTRLKTVQSKVESSHFSSKQL---GNRDTKTTNTNGRLQLDLL 459

Query: 729  LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSM 787
               +      SY+L  +    L + +++V    + ++F     S   L  Y   DA+L  
Sbjct: 460  QLIQRDHHLRSYTLNSVCAHFLKEQKEDVHHSMITELFNGDCNSRRRLAVYCLKDAYLPQ 519

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVK 845
             L+  L  L    ++  ++G  +   L  +R Q++ ++  L       + I+PD      
Sbjct: 520  RLLDKLMCLVNYTEMARVTGVPFNYIL--SRGQQIRFISQLFRKALDHQLIIPD------ 571

Query: 846  ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
                                         N    ND         Y G  V+EPK+G Y 
Sbjct: 572  ---------------------------LPNQGDSNDQ--------YEGATVIEPKRGYYR 596

Query: 906  KYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PH---LPSSKT-TG 949
              +  LDF SLYPSI+Q +N+C+TT           +++  D +V PH     ++KT  G
Sbjct: 597  DPVATLDFASLYPSIMQAHNLCYTTWLDKQTVEKLKMKKDEDYIVTPHGDMFCTAKTRKG 656

Query: 950  VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
            +L E+L+ ++  R+  K  + T +   K   L+ +Q ALK+TANS+YG  G +N +    
Sbjct: 657  LLTEILEEVLSARKKAKRELATETDPFKKAVLNGRQLALKVTANSVYGLTGATNGKLPCL 716

Query: 1009 PLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAI 1060
             +A   T  GR+++  T   V+   N+        EVIYGDTDS+M+  G  ++ +A  +
Sbjct: 717  AIASSTTSFGRQMIERTKAEVEAKYNIANGYTHDAEVIYGDTDSVMVKFGTSNLEEAMKL 776

Query: 1061 AGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
              +    V  K+ K ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ VR
Sbjct: 777  GEEAATYVTSKFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTNPHKWDKMDTKGIETVR 834

Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
            RD   L + V +  L  +L ++  E     +  ++     D+   +V +   VITK LTK
Sbjct: 835  RDNCRLVQTVIETSLRMLLIDQDPEGAQAFVKETIA----DLLQNKVDMSNLVITKALTK 890

Query: 1180 PPE-----AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
              +      Y  A  Q HV++A R+K+    +  + GD V Y++         ++ G   
Sbjct: 891  QEDKDGKGGY--ANKQAHVELAERMKKRDAGSAPALGDRVAYVMI-------RAATGAKN 941

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
              +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 942  FEKSEDPLYVLENNLPIDTRYYLDNQLAKPLGRIFEPILG 981


>gi|390939096|ref|YP_006402834.1| DNA polymerase Pol2 [Desulfurococcus fermentans DSM 16532]
 gi|390192203|gb|AFL67259.1| DNA polymerase Pol2 [Desulfurococcus fermentans DSM 16532]
          Length = 797

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 177/680 (26%), Positives = 303/680 (44%), Gaps = 135/680 (19%)

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            +  E S++ ++      + + D D++VG+N S FD   L+ RA+V    +++   +GR +
Sbjct: 214  IAEELSDKEVITEFTDYILRYDPDIIVGYNSSRFDWPYLMERARV----NNLKLDVGR-R 268

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            R   P          S ++ G +S I GR+  D    + ++      SL  +A       
Sbjct: 269  RDGQP----------SQSTYGHIS-IPGRIHVDLLNFAEEIPEVKLKSLDIVADYLGVMK 317

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLS-----------VLPLTRQL 802
            R E          + L   +E   Y    A   + L ++L             LP   QL
Sbjct: 318  RSE----------RVLIDYIEFPRYWRDPARKPLLLRYNLEDVESTMGLAEKFLPFAMQL 367

Query: 803  TNISGNLWGKTLQGARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            ++I+G    +    +   R+E+ L+  AFR  + ++P++                     
Sbjct: 368  SSITGLPLDQVGAASVGNRLEWFLMREAFRRDE-LIPNRIE------------------- 407

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
                                    K    Y G +VL+P  G+++  I +LDF S+YP+I+
Sbjct: 408  ------------------------KEAEPYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIM 442

Query: 922  QEYNICFTTVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
             +YNI   T+ R           +P+  V H    +  G    +L+ L+  R+ ++  MK
Sbjct: 443  IKYNIGPDTIIREGICSESEHYVAPE--VKHCFLREPPGFFKGVLQTLLSLRKQIRGEMK 500

Query: 971  T--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
                   + + LD +Q+A+K+ AN+ YG +G+  +R+Y K  AE +T  GR+ + S +D 
Sbjct: 501  KYKTDSPEYRLLDERQKAIKVLANATYGYMGWVAARWYCKECAEAVTAWGRKTILSVIDY 560

Query: 1029 VQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLL 1088
             +  + L+VIYGDTDS+ + +  D I +        + E  ++    EI +D +YKR+  
Sbjct: 561  AR-VIGLKVIYGDTDSLFVENIPDKITR--------LSEYVERELGFEIKIDKVYKRVFF 611

Query: 1089 LK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
             + KK+YA +    +DG     ++  G + VR DW+ ++KEV +     +LSE++ E  +
Sbjct: 612  TEAKKRYAGL---LEDGR----VDIVGFEAVRGDWAEIAKEVQEKVTEILLSEKNIEKAI 664

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E + N++     ++  G++ LEK +I KTLTK  E Y      PHV  A ++K+ G    
Sbjct: 665  EYVRNTIA----ELNQGRIPLEKLIIWKTLTKSIEEY--EAEAPHVNAARKMKRMGMK-- 716

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD + YI+    G        I+ RA  P    K D K ++D  YY   QI P   R
Sbjct: 717  IEVGDKIGYIVVKGSGK-------ISDRA-EPYMFVK-DPK-LVDTIYYIDHQIIPAALR 766

Query: 1268 LCA--SIEGTSPERLADCLG 1285
            +     +  T  +R+A   G
Sbjct: 767  ILEYFGVTDTQLKRVASTAG 786


>gi|5011|emb|CAA41968.1| catalytic subunit DNA polymerase delta [Schizosaccharomyces pombe]
          Length = 1084

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 170/652 (26%), Positives = 284/652 (43%), Gaps = 98/652 (15%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP 713
            +D DVL+G+NI  FD+  LL RA+  R+ +  +  +GR+            +    G   
Sbjct: 372  VDPDVLIGYNICNFDIPYLLDRAKSLRIHN--FPLLGRIHNFFSVAKETSFSSKAYGTRE 429

Query: 714  GIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLES 771
               + I GRL  D     +   +  SYSL  +    L + +++V  + ++   Q  T +S
Sbjct: 430  SKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVH-YSIITDLQNGTADS 488

Query: 772  LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFR 831
               L  Y   DA+L   LM  L       ++  ++G  +   L  AR Q+++ +      
Sbjct: 489  RRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL--ARGQQIKVI------ 540

Query: 832  AKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAY 891
                           +++  +   H +   N+                   R       Y
Sbjct: 541  ---------------SQLFCKALQHDLVVPNI-------------------RVNGTDEQY 566

Query: 892  AGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS----------------- 934
             G  V+EP KG YD  I  LDF+SLYPSI+Q +N+C+TT+  S                 
Sbjct: 567  EGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSVT 626

Query: 935  PDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
            P+G   + PH+      G+LP +L +L+  R+  K  +K  +   K   LD +Q ALK++
Sbjct: 627  PNGDYFVKPHV----RKGLLPIILADLLNARKKAKADLKKETDPFKKAVLDGRQLALKVS 682

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDT 1042
            ANS+YG  G +N R     ++  +T  GR+++  T D+V+    +E        VIYGDT
Sbjct: 683  ANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGDT 742

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            DS+M+  G+  + +A  +  +    V+ ++    I+        LL+ KK+YA +     
Sbjct: 743  DSVMVKFGVKTLPEAMKLGEEAANYVSDQFPN-PINWSFSTFPYLLISKKRYAGLFWTRT 801

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            D   Y+ ++ KG++ VRRD   L   V D  L ++L ++     VE       KV  D+ 
Sbjct: 802  D--TYDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQD----VEGAQLFTKKVISDLL 855

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
              ++ + ++VITK L+K       A    HV++A R+++    +  + GD V Y+I    
Sbjct: 856  QNKIDMSQHVITKALSKTDY----AAKMAHVELAERMRKRDAGSAPAIGDRVAYVII--- 908

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                  + G     R  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 909  ----KGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILG 956


>gi|62088700|dbj|BAD92797.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa variant
            [Homo sapiens]
          Length = 1011

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 165/607 (27%), Positives = 281/607 (46%), Gaps = 102/607 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------L 692
            E  LL      +  +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       +
Sbjct: 376  EEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNI 433

Query: 693  KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQ 749
            + S     + GR          ++S + GR+  D     + LLRE    SY+L  ++   
Sbjct: 434  RDSSFQSKQTGRR------DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHF 483

Query: 750  LNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L + +++V  H ++   Q    ++   L  Y   DA+L + L+  L VL    ++  ++G
Sbjct: 484  LGEQKEDVQ-HSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTG 542

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L  +R Q+V+ +                     +++ +Q  + G+    V+   
Sbjct: 543  VPLSYLL--SRGQQVKVV---------------------SQLLRQAMHEGLLMPVVKSEG 579

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
             ED                    Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C
Sbjct: 580  GED--------------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLC 619

Query: 928  FTTVE----------------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-K 970
            +TT+                 R+P G    + +S   G+LP++L+NL+  R+  K  + K
Sbjct: 620  YTTLLRPGTAQKLGLTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAK 678

Query: 971  TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
                L+ Q LD +Q ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV+
Sbjct: 679  ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVE 738

Query: 1031 NNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDG 1081
            +   +E        V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + 
Sbjct: 739  SKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEK 798

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            +Y   LL+ KK+YA +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R
Sbjct: 799  VYFPYLLISKKRYAGLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR 857

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
              E  V    +    V  D+   ++ + + VITK LT+    Y  A  Q HV++A R + 
Sbjct: 858  DPEGAVAHAQD----VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERTRC 911

Query: 1202 SGYSTGC 1208
            S +ST C
Sbjct: 912  SCWSTAC 918


>gi|355712611|gb|AES04406.1| polymerase , delta 1, catalytic subunit 125kDa [Mustela putorius
            furo]
          Length = 585

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 210/417 (50%), Gaps = 41/417 (9%)

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------- 933
            K + G  Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+ R          
Sbjct: 53   KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQRLGLT 112

Query: 934  ------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQA 986
                  +P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q A
Sbjct: 113  EDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLA 171

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VI 1038
            LK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        V+
Sbjct: 172  LKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGANAKVV 231

Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAV 1097
            YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA +
Sbjct: 232  YGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFTYLLISKKRYAGL 291

Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
                +    ++ ++ KGL+ VRRD   L   +    L ++L +R     V    +    V
Sbjct: 292  LFSSRPDT-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAVAHAQD----V 346

Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
              D+   ++ + + VITK LT+    Y  A  Q HV++A R+++    +  S GD VPY+
Sbjct: 347  ISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYV 404

Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            I        G++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 405  II-------GATKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 454


>gi|118431730|ref|NP_148383.2| DNA polymerase II [Aeropyrum pernix K1]
 gi|152031597|sp|O93746.3|DPOL2_AERPE RecName: Full=DNA polymerase 2; AltName: Full=DNA polymerase II
 gi|116063052|dbj|BAA81109.2| family B DNA polymerase II [Aeropyrum pernix K1]
          Length = 803

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 177/679 (26%), Positives = 302/679 (44%), Gaps = 132/679 (19%)

Query: 628  KAGSNVLCCESSERA---LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
            +AG  +   E+ +R+   ++   +  +  +D DV+VG+N + FD   L+ RA+V  V   
Sbjct: 214  QAGGEIEILEAEDRSDKKVIAGFVERVKSIDPDVIVGYNQNRFDWPYLVERARVLGV--- 270

Query: 685  MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS--CIAGRLLCDTFLCSRDLLREVSYSL 742
               K+   +RS  P+             PG+     ++GRL  D    + +L  EV    
Sbjct: 271  ---KLAVGRRSVEPQ-------------PGLYGHYSVSGRLNVDLLDFAEEL-HEVKVKT 313

Query: 743  TQLAKTQLNKDRKEVGPHDVLKMFQTLE-----SLMELI-EYGETDAWLSMELMFHLSVL 796
             +     L   +  +G    L+ +Q  E     S  E++ +Y   D   +M L      L
Sbjct: 314  LEEVADYLGVVK--IGERVTLEWWQIGEYWDDPSKREILRKYLRDDVRSTMGLAEKF--L 369

Query: 797  PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            P   +L+ +SG    + +  +   R+E+ L+        +VP                  
Sbjct: 370  PFGAELSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVP------------------ 411

Query: 857  GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                              N    ++ R       YAG +VL PK G+++  I +LDF S+
Sbjct: 412  ------------------NRVERSEGR-------YAGAIVLRPKPGVHED-IAVLDFASM 445

Query: 917  YPSIIQEYNICFTTVER------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
            YP+I+ +YN+   T+ R            +P+  V H       G   ++L+  +  RR 
Sbjct: 446  YPNIMVKYNVGPDTLVRPGEEYGEEEVYTAPE--VGHKFRKSPPGFFKKILERFLSWRRQ 503

Query: 965  VKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            +++ MK       + + LD +Q+A+KL AN+ YG +G+ ++R+Y +  AE +T  GR I+
Sbjct: 504  IRSEMKKHPPDSPEYKLLDERQKAIKLLANASYGYMGWPHARWYCRECAEAVTAWGRSII 563

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            R+ +      L LEVIYGDTDS+ +    +D  K + +   V +E+       +I +D +
Sbjct: 564  RTAIRKA-GELGLEVIYGDTDSLFVK---NDPEKVERLIRFVEEELG-----FDIKVDKV 614

Query: 1083 YKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            Y+R+   + KK+Y  + V  K       I+  G + VR DWS L+KE        +L   
Sbjct: 615  YRRVFFTEAKKRYVGLTVDGK-------IDVVGFEAVRGDWSELAKETQFKVAEIVLKTG 667

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
            S ++ V+ + N    + E +R GQV + K VI KTLT+PP  Y     QPHV  AL +++
Sbjct: 668  SVDEAVDYVRN----IIEKLRRGQVDMRKLVIWKTLTRPPSMY--EARQPHVTAALLMER 721

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
            +G       G  + Y++    G        +  RA+      K +    +D++YY  +Q+
Sbjct: 722  AGIK--VEPGAKIGYVVTKGSGP-------LYTRAKPYFMASKEE----VDVEYYVDKQV 768

Query: 1262 HPVVSRLCASIEGTSPERL 1280
             P   R+     G + +RL
Sbjct: 769  VPAALRILQYF-GVTEKRL 786


>gi|403221257|dbj|BAM39390.1| DNA polymerase delta catalytic subunit [Theileria orientalis strain
            Shintoku]
          Length = 1072

 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 167/635 (26%), Positives = 298/635 (46%), Gaps = 88/635 (13%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTIFG 708
            L ++D D L G+NI  FDL  LL R+ V  +    + KI R++   S          + G
Sbjct: 353  LVQVDPDFLTGYNIIVFDLPYLLTRSTVLNI--ERFKKITRIRSTSSNFKDAIVSNNMMG 410

Query: 709  SGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
            +  +  I   I GR++ D +   R   +  SY+L  ++   L + +++V    + K+ Q 
Sbjct: 411  TYENKDIN--IEGRIMFDVYDLVRRDHKLKSYTLNYVSFEFLGQQKEDVHYSTISKLQQG 468

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
            T      +  Y   DA L + L+  L ++    ++  ++       +   +  RV   + 
Sbjct: 469  TSSDRRRIASYCLKDAILPLLLINKLLLVFNYVEMARVTSTPIKFLITRGQQIRVTMQIY 528

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
               R  KY++P          +      HG  + N                         
Sbjct: 529  RQCRKMKYVIP----------VISSAGRHGSNENN------------------------- 553

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VERSPDGLVPH 941
               Y G  VL+P+KG +   I +LDF SLYPSI+  YN+C++T      +   P+  V  
Sbjct: 554  ---YEGATVLDPQKGYHTNPIAVLDFQSLYPSIMIAYNLCYSTLVPQNKILNHPEEDVTR 610

Query: 942  LP---------SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL-DIQQQALKLTA 991
            +P         ++K  G+LP +++NL++ RR  K  M +     ++++ D +Q ALK+T 
Sbjct: 611  IPGYIDLCFVKATKRKGILPIIVENLIEARRKAKKMMASCQDPMLKKVYDGRQLALKVTT 670

Query: 992  NSMYGCLGFSNSRFY-AKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDT 1042
            NS+YG  G ++  F     +A  IT  GR I+ +T ++++++  +        +V+YGDT
Sbjct: 671  NSVYGYTGAASGGFLPCVDVATAITSFGRNIILNTKNIIEDHFTVKNGYKNDAKVVYGDT 730

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNK-KYKCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            DS+MI+ G +DI +A  +  +   ++     K + +  + +Y+ +LLL KK+YA   + +
Sbjct: 731  DSVMINFGTEDIQEAIDLGNEAASKITSVSVKPITLLFEKVYRPLLLLNKKRYAG--LYY 788

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             +   YE I+ KG++ VRRD+ +L +++ +  L  +L E +    +E + N   KV E +
Sbjct: 789  NNSKTYEKIDCKGIETVRRDFCMLVQQMMERVLYLLLVELNLPAAIEFVKN---KVSELL 845

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            R+ ++ +   V+TK+L K        +  PHV++A +L++         GD + YII   
Sbjct: 846  RN-EIDISLLVVTKSLGKLEY----EQRLPHVELAKKLRKRDPGKAPGVGDRISYIIV-- 898

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
            +GT      G AQ  R  + L   +    ID ++Y
Sbjct: 899  KGTK-----GEAQYDRAEEPLYVTENNLPIDTNHY 928


>gi|12275273|emb|CAC22334.1| DNA polymerase [Leishmania guyanensis]
          Length = 287

 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 162/313 (51%), Gaps = 61/313 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  R V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATKRNQEKE----TCI-GRLVVDSYSLSREHYRTVNYRLL 62

Query: 744 QLA-KTQLNKDRKEVGPHD----VL--KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K     +    VL   M  +   + +++      A LS  ++ HL V+
Sbjct: 63  SLAHQMQLQGITKGTNSFEPGTSVLTPSMLSSSRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGRD---- 176

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                                  +D   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 177 -----------------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 213

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE+NICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 214 YPSLIQEFNICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 271

Query: 959 VQRRRMVKTWMKT 971
           V  RR VK  MKT
Sbjct: 272 VDSRREVKRLMKT 284


>gi|327311462|ref|YP_004338359.1| DNA polymerase II [Thermoproteus uzoniensis 768-20]
 gi|326947941|gb|AEA13047.1| DNA polymerase II [Thermoproteus uzoniensis 768-20]
          Length = 785

 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 172/653 (26%), Positives = 303/653 (46%), Gaps = 118/653 (18%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            +R  L   +  + + D DV++G+N +GFD   L  RA+   V  S    + RL  +    
Sbjct: 210  DRKALREFVEYVREYDPDVILGYNSNGFDWPYLAERAKRLGVALS----VDRLGGAPQ-- 263

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ---LNKDRKE 756
                ++++G  +       + GR   D +    D ++E+       A      + +D + 
Sbjct: 264  ----QSVYGHWS-------VVGRANVDLYNVI-DEIQEIKVKTLDRAAEYFGVMKRDERT 311

Query: 757  VGP-HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
            + P H + + +         I+Y   DA  +  L   L  LP   QL+++SG    +   
Sbjct: 312  LIPGHRIYEYWDDPSRRPIFIKYAIEDAVSTYGLGEKL--LPYLIQLSSVSGVPLDQVAA 369

Query: 816  GARAQRVEYLLL-HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
             +   RVE+LL+ +A+R  + + P++                  E+R  E          
Sbjct: 370  ASVGARVEWLLMRYAYRMGE-VAPNR------------------EERPYE---------- 400

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT---- 930
                            Y G +VLEP+ G+Y   + +LDF S+YPSI+ +YN+   T    
Sbjct: 401  ---------------TYKGAIVLEPRPGIYQD-VAVLDFTSMYPSIMMKYNLSPDTYLEP 444

Query: 931  --------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQL 980
                    V R+P+  V H      TG +P++L +LV+ R+ V++ M     + ++ + L
Sbjct: 445  GEPDPPEGVYRAPE--VGHRFRKSPTGFIPQVLASLVKLRKEVRSAMSGLDPNSVEYKLL 502

Query: 981  DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
            D +Q+ALK+ AN+MYG +G+  +R+Y + +AE +T   R IL   ++  +N   + VIYG
Sbjct: 503  DERQRALKIMANAMYGYMGWLGARWYKREVAESVTAFARNILLDVINFAKNT-GINVIYG 561

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKV 1099
            DTDS+ +    D          ++I  VN K+  +EI L+ +YK++L  + KK+YA +  
Sbjct: 562  DTDSLFVKYSKD--------IDRIINYVNDKFN-IEIKLEKIYKKLLFTESKKRYAGL-- 610

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG     I+  G ++VR DW  L+KEV    +   L  ++  +  + I + +  +  
Sbjct: 611  -LDDGR----IDIVGFEVVRGDWCELAKEVQLKVIEYTLKSQNLTEAKDKIVSYVKSIIN 665

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            ++++  + L+  +I KTL K  + Y      PHV  A  L++ GY      G ++ Y+I 
Sbjct: 666  NIKTYNIDLDDLIIWKTLDKELDEY--KVTPPHVYAAKLLEKHGYK--IHKGMSIGYVIV 721

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              +G+   SS   A+     +++K+      +D+DYY  +QI P   R+   I
Sbjct: 722  --KGSDKLSSR--AKPYILVEDIKE------VDVDYYIEKQIVPAALRIGEVI 764


>gi|159041906|ref|YP_001541158.1| DNA polymerase Pol2 [Caldivirga maquilingensis IC-167]
 gi|157920741|gb|ABW02168.1| DNA polymerase Pol2 [Caldivirga maquilingensis IC-167]
          Length = 781

 Score =  170 bits (430), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 176/672 (26%), Positives = 301/672 (44%), Gaps = 139/672 (20%)

Query: 626  NSKAGSNVLCCES--SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
            NS     +L  ++   ER +LN +M  + + D DVL G+N + FD+  L++RA    V  
Sbjct: 198  NSNGDVKLLTLDNYKHEREMLNDMMSVIKEWDPDVLFGYNSNKFDMPYLVNRADALNV-- 255

Query: 684  SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
                K+   K    P+    ++++G  +       I GR   D +    D+      SL 
Sbjct: 256  ----KLQLSKYGTPPE----QSVYGHWS-------IIGRAHIDLYNFIEDMTDVKRKSLD 300

Query: 744  QLAK---TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTR 800
             +A+        +R  +  H + + +       +LI+Y   D   ++ L   L  LP   
Sbjct: 301  YVAEYFGVMKRSERVNIPGHRIYQYWDDEGKRSQLIKYARDDVLSTLGLGKIL--LPYAM 358

Query: 801  QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
            QL ++SG    +    +   RVE +++H       + P++     ET             
Sbjct: 359  QLASVSGLPLDQVGPASVGSRVEMMIMHEAYKMGELAPNRVERPYET------------- 405

Query: 861  RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
                                          Y G +VLEPK G++   I +LDF+S+YP+I
Sbjct: 406  ------------------------------YKGAIVLEPKPGIHYN-IAVLDFSSMYPNI 434

Query: 921  IQEYNICFTTVERSPDGLVPHLPSSK----------------TTGVLPELLKNLVQRRRM 964
            + +YNI       SPD LV  L SS+                  G+   LL+ L++ RR 
Sbjct: 435  MLKYNI-------SPDTLV--LDSSEGDYYTAPEVGYRFRKSPRGLYASLLQKLIEARRE 485

Query: 965  VKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
             +  M+       +   L+ +Q+ALK+ AN+MYG  G+  +R+Y + +AE +T  GR +L
Sbjct: 486  ARDEMRNYPEGSFEWVLLNERQRALKIMANAMYGYCGWLGARWYIREVAESVTAWGRYLL 545

Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
            ++ + + +    L VIYGDTDS+ +    D +A        +I  +N+     E+ +D +
Sbjct: 546  KTAMSMAKER-GLTVIYGDTDSLFVTYDKDKVA-------DIISRINE--MGFEVKIDKV 595

Query: 1083 YKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
            Y +++  + KK+Y  +     DG     ++  G + VR DWS L++ V +     +L E 
Sbjct: 596  YSKLIFTESKKRYIGLTA---DGE----VDIVGFEAVRGDWSELARNVQERVAELVLRE- 647

Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
            S ++ V+ + +    V +D+R+ +  ++  +I KTL K    Y     QPHV  A RL +
Sbjct: 648  SVDEAVKYVKS----VIDDLRNYRFTIDDVIIWKTLDKDINEYKAI--QPHVVAARRLME 701

Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP----DELKKGDGKWMIDIDYYA 1257
             GY    + GDTV ++I  + G        + QRA +P    +++K+      ID+DYY 
Sbjct: 702  KGYV--VNKGDTVGFVIVKDSGDK------LTQRA-YPYVFINDVKE------IDVDYYV 746

Query: 1258 SQQIHPVVSRLC 1269
             +Q+ P   R+ 
Sbjct: 747  EKQVIPAALRIL 758


>gi|324120738|dbj|BAJ78760.1| DNA polymerase delta catalytic subunit [Anacanthocoris striicornis]
          Length = 1091

 Score =  169 bits (429), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 169/683 (24%), Positives = 304/683 (44%), Gaps = 100/683 (14%)

Query: 630  GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
            GS V+  E  ER LL +    + ++D D+  G+NI+ FD   L++RA    +  S +  +
Sbjct: 352  GSQVISFED-ERELLEKWAEFVREVDPDLFTGYNINNFDFPYLINRAN--HLKCSHFVYL 408

Query: 690  GRLKRSEMPKLRKGRTIFGS--GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
            GR+K   +  + K   I     G     +    GR   D  L    LLR+    SY+L  
Sbjct: 409  GRIK--NIKSIVKDHIIQSKQMGRRENKLINFEGRTSFDLLLV---LLRDYKLRSYTLNA 463

Query: 745  LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
            ++   L + +++V  H ++   Q    ++   L  Y   DA+L ++L+  L  +    ++
Sbjct: 464  VSFNFLQEQKEDVH-HSIISDLQNGNEQTRRRLAVYCLKDAYLPIKLLDKLMCVINYMEM 522

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
              ++G      L   +  +V   LL       Y++P                        
Sbjct: 523  ARVTGVSLSALLTRGQQIKVMSQLLRKSMESGYLLPT----------------------- 559

Query: 863  VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
                               HR       + G  V+EP KG Y   I  LDF+SLYPSI+ 
Sbjct: 560  -------------------HRVNDSSEQFEGATVIEPLKGYYKDPIATLDFSSLYPSIMI 600

Query: 923  EYNICFTTV----ERSPDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKT 967
             +N+C++T+    +R+  GL P            + +S   G+LP++L++L+  R+  K 
Sbjct: 601  AHNLCYSTLIHAQQRNALGLSPDQYSTTPCENYFVKTSVRKGLLPQILESLLTARKKAKF 660

Query: 968  WMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
             +K  +   K + LD +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T 
Sbjct: 661  DLKNETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIERTK 720

Query: 1027 DLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+    ++        V+YGDTDS+M+  G+D + +A  +  +  + V+ K+   +++
Sbjct: 721  QEVEQRYCIKNGYKFDSIVVYGDTDSVMVKFGVDSLEEAMKLGKEAAEYVSTKFISPIKL 780

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA +     D   Y+ ++ KGL+ VRRD   L   + + CL ++
Sbjct: 781  EFEKVYWPYLLINKKRYAGLYYTKLD--EYDKMDCKGLETVRRDNCPLVANLLNTCLQKL 838

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ++  +  +      +     D+   ++ + + VITK L K       A  Q HV++A 
Sbjct: 839  LIDKDPDAAINYAKQQI----SDLLCNRLDISQLVITKELAKTDY----AGKQAHVELAN 890

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            ++K+    +    GD VP++I      ++  S    Q+A  P  +   +    +D  YY 
Sbjct: 891  KMKKRDAGSAPKLGDRVPFVI-----VAAAKSTPAYQKAEDP--MYVLENNIPLDTTYYL 943

Query: 1258 SQQIHPVVSRLCASIEGTSPERL 1280
              Q+   + R+ + I G   E +
Sbjct: 944  ENQLAKPLLRIFSPILGEKAESI 966


>gi|284161393|ref|YP_003400016.1| DNA polymerase Pol2 [Archaeoglobus profundus DSM 5631]
 gi|284011390|gb|ADB57343.1| DNA polymerase Pol2 [Archaeoglobus profundus DSM 5631]
          Length = 783

 Score =  169 bits (429), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 179/671 (26%), Positives = 292/671 (43%), Gaps = 129/671 (19%)

Query: 628  KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
            K G         ER +L R +  + + D D++VG+N   FD   +  RA+       +  
Sbjct: 189  KCGDFEEVLHGDERDILRRFVSIIKEQDPDIIVGYNQDNFDWPYVKKRAE----KFGIRL 244

Query: 688  KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
             IGR  RSE+   R GR              IAGRL  D +  +  +      +L ++A+
Sbjct: 245  DIGR-DRSEI-SFRGGR------------PKIAGRLNVDLYDIALKIPDVKIKTLKKVAE 290

Query: 748  TQLNK-DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
                K + +++   D+ K +   E   ++ ++   D   +  L   L +LP+  +L+ + 
Sbjct: 291  FLGAKVEEEDIEGRDIYKCWMRGEK-EKVFKHVLNDVLTTYRLA--LELLPMHYELSRMI 347

Query: 807  GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
                    +  R ++V+Y LL   +    I P+                       +EE 
Sbjct: 348  RLPLDDVARLGRGKQVDYFLLSEAKKINEIAPNP--------------------PEIEE- 386

Query: 867  TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
                                   +Y G  VLEP +GL++  +  LDF S+YPSI+  +NI
Sbjct: 387  -----------------------SYEGAFVLEPARGLHEN-VACLDFASMYPSIMINFNI 422

Query: 927  CFTTVERSPDGLVP-------------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-- 971
                   SPD LV              H       G    +LK L+++RR +K  MK   
Sbjct: 423  -------SPDTLVKGECEDCYVAPEVGHKFRKSPDGFFKRILKMLIEKRREMKRQMKELD 475

Query: 972  ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
                  + LDI+QQ LK+  NS YG  G++ +R+Y +  AE  T  GR  ++  V + + 
Sbjct: 476  PDSEDYKLLDIKQQTLKVLTNSFYGYTGWNLARWYCRECAEATTAWGRYFIKRAVKIAE- 534

Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
            ++  EV+YGDTDS+ I     ++   +    K+I  ++K+   +++++D  YK +  ++K
Sbjct: 535  SMGFEVLYGDTDSLFIKKNKLNLKDLEKECLKLIDVISKELP-IQLEIDEFYKAIFFVEK 593

Query: 1092 KKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            K+YA +          + I  KGL++ R DW  L+K V    +  IL ER+ +  ++ + 
Sbjct: 594  KRYAGLTDD-------DRIVVKGLEVRRGDWCELAKRVQREVIEIILRERNPDKALKFVK 646

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSG--YSTGCS 1209
            N    V E+++ G+  LE YVI K LTK P+ Y     Q HV+ ALR  + G  Y  G  
Sbjct: 647  N----VIEEIKEGKFKLEDYVIYKGLTKKPDKY--ESKQAHVKAALRAMEMGIYYPIGTK 700

Query: 1210 AGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM------------IDIDYYA 1257
             G  +            G S  I+ RA   + +++ DG+ +            ID DYY 
Sbjct: 701  VGFVI---------VKGGGS--ISDRAYPIELIEEFDGENLKIRTPSGIMVKKIDKDYYI 749

Query: 1258 SQQIHPVVSRL 1268
              QI P V R+
Sbjct: 750  DHQIIPAVMRI 760


>gi|121716875|ref|XP_001275938.1| DNA polymerase delta large chain [Aspergillus clavatus NRRL 1]
 gi|119404095|gb|EAW14512.1| DNA polymerase delta large chain [Aspergillus clavatus NRRL 1]
          Length = 1105

 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 171/658 (25%), Positives = 301/658 (45%), Gaps = 103/658 (15%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKI-GRLKRSEMPKLRKGRTIFG 708
            L K+D DV++G+NI+ FD   LL RA+  +      W+++ G L ++        +    
Sbjct: 383  LEKVDPDVIIGYNIANFDFPYLLDRAKHLKCGGFPYWTRMKGILSQATSTNFSSKQM--- 439

Query: 709  SGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
             G      +   GR+  D   L  RD  LR  SY+L  ++   L + +++V    + +++
Sbjct: 440  -GNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTLNSVSYEFLKEQKEDVHHTMITELY 496

Query: 767  Q-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL 825
              T +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++L
Sbjct: 497  NGTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFL 554

Query: 826  --LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L      ++ ++P                       N++    +D             
Sbjct: 555  SQLFRKALEQQLVIP-----------------------NMKSTDEQD------------- 578

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---- 933
                   Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT      VE+    
Sbjct: 579  -------YEGATVIEPIRGYYGVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVEKLKLK 631

Query: 934  -------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQ 985
                   +P+G +    +    G+L ++L+ L+  R+  K  +   +   K   L+ +Q 
Sbjct: 632  KDDDYIVTPNGDM-FCTAKVRKGLLSQILEELLSARKRAKKELAIETDPFKKAVLNGRQL 690

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EV 1037
            ALK++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +V
Sbjct: 691  ALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVEAKYTIANGYSHDAKV 750

Query: 1038 IYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAA 1096
            IYGDTDS+M+  G+ ++  A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA 
Sbjct: 751  IYGDTDSVMVKFGVSELEDAMKLGQEAADFVSSKFLKPIKLEFEKVYFPYLLINKKRYAG 810

Query: 1097 VKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156
              + + +   ++ ++ KG++ VRRD  LL + V +  L +IL +R  +   + + +++  
Sbjct: 811  --LYWTNPKKFDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDIDGAQDYVKDTI-- 866

Query: 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPY 1216
               D+   +V + K VITK L+K   A   AK Q HV++A R+++    +  + GD V Y
Sbjct: 867  --SDLLQNKVDMSKLVITKALSK---ADYTAK-QAHVELAERMRKRDAGSAPTLGDRVAY 920

Query: 1217 IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            +I    G S           +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 921  VIVKGAGGSKNYE-------KSEDPIYVLENNIPIDTKYYLDNQLANPLGRIFEPILG 971


>gi|330921129|ref|XP_003299297.1| hypothetical protein PTT_10256 [Pyrenophora teres f. teres 0-1]
 gi|311327099|gb|EFQ92613.1| hypothetical protein PTT_10256 [Pyrenophora teres f. teres 0-1]
          Length = 1115

 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 195/822 (23%), Positives = 352/822 (42%), Gaps = 135/822 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++   V G  W+    SK+      +R S C++E  V   +D+   SS    A++ P+ 
Sbjct: 252  FMIDTSVTGMCWVEAPASKYRMINPRERHSNCQFEAQVHY-EDLIAHSSEGEWAKLAPLR 310

Query: 554  VTAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
            + + +++    K      +V+ ++  + V     +          +KP + + F +    
Sbjct: 311  ILSFDIECAGRKGIFPEANVDPVIQIANVVTRYGE----------QKPFVRNVFCL---- 356

Query: 610  DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
                          D  S   S  +    +E  +L +    + ++D DV++G+NI+ FD 
Sbjct: 357  --------------DTVSSIASTEIFSFQNEGEMLMKWRDFVEQVDPDVIIGYNINNFDF 402

Query: 670  DVLLHRAQ---VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
              LL RA+   + R P   W+++  ++          + +   G      +   GRL  D
Sbjct: 403  PYLLDRAKHLKLQRFP--YWTRLKTVQSKVESSHFSSKQL---GNRDTKTTNTNGRLQLD 457

Query: 727  TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWL 785
                 +      SY+L  +    L + +++V    + ++F     S   L  Y   DA+L
Sbjct: 458  LLQLIQRDHHLRSYTLNSVCAHFLKEQKEDVHHSMITELFNGDSNSRRRLAVYCLKDAYL 517

Query: 786  SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTY 843
               L+  L  L    ++  ++G  +   L  +R Q++ ++  L       + IVPD    
Sbjct: 518  PQRLLDKLMCLVNYTEMARVTGVPFNYIL--SRGQQIRFISQLFRKALDHQLIVPD---- 571

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
                                  L N+               G     Y G  V+EPK+G 
Sbjct: 572  ----------------------LPNQ---------------GDSSDQYEGATVIEPKRGY 594

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSPDGLV-PH---LPSSKT- 947
            Y   +  LDF SLYPSI+Q +N+C+TT           +++  D +V PH     ++KT 
Sbjct: 595  YRDPVATLDFASLYPSIMQAHNLCYTTWLDKQTVEKLKMKKDEDYIVTPHGDMFCTAKTR 654

Query: 948  TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
             G+L E+L+ ++  R+  K  + T +   K   L+ +Q ALK+TANS+YG  G +N +  
Sbjct: 655  KGLLTEILEEVLSARKKAKRELATETDPFKKAVLNGRQLALKVTANSVYGLTGATNGKLP 714

Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIAKAK 1058
               +A   T  GR+++  T   V+   N+        EVIYGDTDS+M+  G  ++ +A 
Sbjct: 715  CLAIASSTTSFGRQMIERTKAEVEAKYNIANGYTHDAEVIYGDTDSVMVKFGTSNLEEAM 774

Query: 1059 AIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
             +  +    V  K+ K ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG++ 
Sbjct: 775  KLGEEAATYVTSKFLKPIKLEFEKVYFPYLLINKKRYAG--LYWTNPHKWDKMDTKGIET 832

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VRRD   L + V +  L  +L ++  E     +  ++     D+   +V +   VITK L
Sbjct: 833  VRRDNCRLVQTVIETSLRMLLIDQDPEGAQAFVKETIA----DLLQNKVDMSNLVITKAL 888

Query: 1178 TKPPE-----AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGI 1232
            TK  +      Y  A  Q HV++A R+K+    +  + GD V Y++         ++ G 
Sbjct: 889  TKQEDKDGKGGY--ANKQAHVELAERMKKRDAGSAPALGDRVAYVMI-------RAATGA 939

Query: 1233 AQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                +  D L   +    ID  YY   Q+   + R+   I G
Sbjct: 940  KNFEKSEDPLYVLENNLPIDTRYYLDNQLAKPLGRIFEPILG 981


>gi|302850307|ref|XP_002956681.1| hypothetical protein VOLCADRAFT_67281 [Volvox carteri f. nagariensis]
 gi|300258042|gb|EFJ42283.1| hypothetical protein VOLCADRAFT_67281 [Volvox carteri f. nagariensis]
          Length = 991

 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 191/756 (25%), Positives = 344/756 (45%), Gaps = 111/756 (14%)

Query: 496  FLVKRKVKGPSWLSISKFSS-CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
            F+V  KV G +W+ +   +      Q+++ C+ E  V   K +      ++ + V P+ +
Sbjct: 130  FMVDTKVVGGNWIELPAGTYFLQRNQQLTHCQIEAHVHYTKFVSHPPEGEY-SSVAPLRI 188

Query: 555  TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
             +I+++    K             C  +AKID P++        + S  +V  + +G + 
Sbjct: 189  MSIDIECCGRKG------------CFPEAKID-PVIQ-------IASMVSVSGRTEGPVV 228

Query: 615  PMGFNKEATDRNSKA---GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDV 671
                 K      S A   G+ V+  +  E+ +L R    L + D D+++G+NI  FDL  
Sbjct: 229  -----KNVMTLGSCAPIVGAEVMSFDD-EKDMLLRWRDLLIESDPDIIIGYNILNFDLPY 282

Query: 672  LLHRAQVCRVPS--SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
            L  RA   ++ +   +W ++ R   + M   +     +G+     I   I GR+  D   
Sbjct: 283  LYERADALKIGAKFQVWGRV-RGSHTRMRDSQFSSKAYGTHEYKDIT--IEGRVQFDLLT 339

Query: 730  CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSM 787
              +   +  SYSL  ++   L + +++V  H  +   Q    E+   L  Y   DA+L  
Sbjct: 340  AIQRDHKLSSYSLNSVSAHFLGEQKEDVH-HSAIADLQAGNEETRRRLAVYCLKDAYLPQ 398

Query: 788  ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
             L+  L       ++  ++G      L   ++ +V   LL   + K +++P+    +K T
Sbjct: 399  RLLDKLMYTYNYIEMARVTGVPLSYLLTRGQSIKVFSQLLRKAQVKDFVIPN----IKVT 454

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
              A                                  G  G  Y G  VLEPK G Y++ 
Sbjct: 455  GPAN---------------------------------GGDGVGYEGATVLEPKIGFYERP 481

Query: 908  ILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP---------------SSKTTGVLP 952
            +  LDF SLYPSI+  +N+C+TT+   P+  +  +P                ++  G+LP
Sbjct: 482  VATLDFASLYPSIMMAHNLCYTTL--VPNDRLATVPVEDRAQSPCGDWFVRGTRQRGLLP 539

Query: 953  ELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
            E+L+ L+  R+  K  +K  +   K   LD +Q ALK++ANS+YG  G +  +     ++
Sbjct: 540  EILEELLAARKRAKNDLKAETDPFKRAVLDGRQLALKVSANSVYGFTGATVGKMPCLAIS 599

Query: 1012 ELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGK 1063
              +T  GRE++  T  LVQ +         + EVIYGDTDS+M++  + D+ +A  +  +
Sbjct: 600  ASVTSYGREMIMKTRALVQEHYTRANGYETDCEVIYGDTDSVMVNFKVSDVTRAMELGRE 659

Query: 1064 VIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDW 1122
                V+K +   ++++ + +Y   LL+ KK+YA   + +     ++ ++ KG++ VRRD 
Sbjct: 660  AAGFVSKAFPPPVKLEFEKVYFPYLLMNKKRYAG--LLWTRPEKHDKMDSKGIETVRRDN 717

Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPE 1182
             LL + V   CL +IL ++     + +    +  V  D+   ++ L   VI+K LTK  +
Sbjct: 718  CLLVRNVVTTCLERILIDKD----IAAAKAYVKGVIADLLMNKIDLSLLVISKGLTKDGD 773

Query: 1183 AYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             Y D K   HV++A ++++   +T  + GD VPY+I
Sbjct: 774  EY-DTKIA-HVELAKKMRKRDAATAPAVGDRVPYVI 807


>gi|124802365|ref|XP_001347450.1| DNA polymerase delta catalytic subunit [Plasmodium falciparum 3D7]
 gi|232011|sp|P30315.1|DPOD1_PLAFK RecName: Full=DNA polymerase delta catalytic subunit
 gi|23495030|gb|AAN35363.1|AE014831_39 DNA polymerase delta catalytic subunit [Plasmodium falciparum 3D7]
 gi|9941|emb|CAA44289.1| DNA Polymerase delta [Plasmodium falciparum]
 gi|160270|gb|AAA29589.1| DNA polymerase-delta [Plasmodium falciparum]
          Length = 1094

 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 209/842 (24%), Positives = 367/842 (43%), Gaps = 176/842 (20%)

Query: 496  FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            +++  K+ G SW++  K  +      +++S C +EI +          S +HV    P+T
Sbjct: 245  YIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDI----------SYEHVE---PIT 291

Query: 554  VTAINLKTVFNKRQDVNE--IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
            +         N+ Q + +  I+S  + C                            KLDG
Sbjct: 292  LE--------NEYQQIPKLRILSFDIECI---------------------------KLDG 316

Query: 612  GIFP-------------MGFNKEATDRNSKAGSNVLCCES----------SERALLNRLM 648
              FP             + F  E  D  +K    +L C S           E+ LL    
Sbjct: 317  KGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLLECASIPGSNVIWFNDEKTLLEAWN 376

Query: 649  IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTI 706
              + ++D D L G+NI  FDL  +L+R     +    +  +GR+K   S +         
Sbjct: 377  EFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKF--LGRIKNVASTVKDSSFSSKQ 434

Query: 707  FGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
            FG+  +  I   I GR+  D + L  RD  +  SY+L  ++   L K++KE   + ++  
Sbjct: 435  FGTHETKEIN--IFGRIQFDVYDLIKRDY-KLKSYTLNYVSFEFL-KEQKEDVHYSIMND 490

Query: 766  FQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
             Q  + ES   +  Y   D  L + L+  L  +    ++  ++G  +   L   +  +V 
Sbjct: 491  LQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVT 550

Query: 824  YLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
              L    +   Y++P   TY+K                     TNE              
Sbjct: 551  SQLYRKCKELNYVIPS--TYMKVN-------------------TNE-------------- 575

Query: 884  KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP 943
                   Y G  VLEP KG Y + I  LDF SLYPSI+  +N+C++T+ +S +  V  L 
Sbjct: 576  ------KYEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKS-NHEVSDLQ 628

Query: 944  SSKTT-----------------GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQ 985
            +   T                 G+LP +++ L++ R+ VK  +K   + +    L+ +Q 
Sbjct: 629  NDDITTIQGKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQL 688

Query: 986  ALKLTANSMYGCLGFSN-SRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLE 1036
            ALK++ANS+YG  G S+  +     +A  IT  GR ++  T + V++          N  
Sbjct: 689  ALKISANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNST 748

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            VIYGDTDS+M+  G ++I +A  +     + ++K++   ++++ + +Y   LLL KK+YA
Sbjct: 749  VIYGDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYA 808

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
               + + +   ++ ++ KG++ VRRD+ +L +++ +  L+++L E++    +E   + + 
Sbjct: 809  G--LLYTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKI- 865

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ-PHVQVALRLKQSGYSTGCSAGDTV 1214
               +++ +  + +   V+TK+L K      D + + PHV++A +LKQ   +T  + GD V
Sbjct: 866  ---KELLTNNIDMSLLVVTKSLGK-----TDYETRLPHVELAKKLKQRDSATAPNVGDRV 917

Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
             YII   +G       G AQ  R  D L   D    ID ++Y      P +SR+   I  
Sbjct: 918  SYIIV--KGVK-----GQAQYERAEDPLYVLDNNLAIDYNHYLDAIKSP-LSRIFEVIMQ 969

Query: 1275 TS 1276
             S
Sbjct: 970  NS 971


>gi|332241130|ref|XP_003269738.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase delta catalytic
            subunit, partial [Nomascus leucogenys]
          Length = 1071

 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 174/659 (26%), Positives = 297/659 (45%), Gaps = 115/659 (17%)

Query: 654  LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
            +D DV+ G+NI  FDL  L+ RAQ  +V    +  +GR       ++ S     + GR  
Sbjct: 388  MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLRSNIRDSSFQSKQTGRR- 444

Query: 707  FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
                    ++S + GR+  D     + LLRE    SY+L  ++   L + +++V  H ++
Sbjct: 445  -----DTKVVSML-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494

Query: 764  KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
               Q    ++   L  Y   DA+L + L+  L VL    ++  ++G      L  +R Q+
Sbjct: 495  TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552

Query: 822  VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
            V+ +                     +++ +Q  + G+    V+    ED           
Sbjct: 553  VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580

Query: 882  HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
                     Y G  V+EP KG YD  I  LDF+SLYPSI+  +N+C+TT+          
Sbjct: 581  ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 631

Query: 933  -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
                   R+P G    + +S   G+LP++L+NL+  R+  K  + K    L+ Q LD +Q
Sbjct: 632  LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690

Query: 985  QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
             ALK++ANS+YG  G    +     +++ +T  GR+++  T  LV++   +E        
Sbjct: 691  LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
            V+YGDTDS+M   G+  +A+A A+  +    V+  +   + ++ + +Y   LL+ KK+YA
Sbjct: 751  VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +    +    ++ ++ KGL+ VRRD   L   +    L ++L +R  E  V    +   
Sbjct: 811  GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
             V  D+   ++ + + VITK     P  Y +    P     +R +  G  +  S GD VP
Sbjct: 867  -VISDLLCNRIDISQLVITKE----PRVYRETSVVP--TNGMRKRDPG--SAPSLGDRVP 917

Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
            Y+I         ++ G+A   +  D L   +    ID  YY  QQ+   + R+   I G
Sbjct: 918  YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 969


>gi|255514001|gb|EET90265.1| DNA polymerase Pol2 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 826

 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 176/688 (25%), Positives = 307/688 (44%), Gaps = 119/688 (17%)

Query: 626  NSKAGSNVLCCE----------SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
            N K G +V+  +           SE  ++   + ++ +LD DV+ G+N + FD+  L+ R
Sbjct: 213  NGKHGKSVMAFKKIDLPFVEYYESEADMIKAFVKKIAELDIDVISGYNSANFDIRYLIER 272

Query: 676  AQVCRVPSSMWSKIG--RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL---- 729
            ++  +V  ++    G  R++R  +    K                I GR+  D ++    
Sbjct: 273  SKSIKVDFNISRFEGETRIERHGLVDRVK----------------IGGRVHVDMYVVVKF 316

Query: 730  -----CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDA 783
                  +  +L+  SY+L  + +      +  V   D+ K++  + E L EL  Y  +D+
Sbjct: 317  ISVVGAAEYILKLNSYTLKNVYEAITGTKKTNVEKKDIYKLWDGSREELEELATYNLSDS 376

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
              ++E ++  +  P+  +LT  +GN           Q VE+LL+        ++P+K   
Sbjct: 377  E-ALEKVYS-TFAPIMIELTRTTGNSLSDVSVSTTGQLVEFLLMKYAHRYGELIPNK--- 431

Query: 844  VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGL 903
              + +  + R  + +E                                 G  V  P+ G+
Sbjct: 432  -PDDREIRSRLINPIE---------------------------------GAYVKTPEPGI 457

Query: 904  YDKYILLLDFNSLYPSIIQEYNICFTTV-------ERSPDGLVPHLPSSKTTGVLPELLK 956
            Y   + + DF  LYPSII  +NI  +TV         SP+G      S    G++P +LK
Sbjct: 458  YSN-LAIFDFRGLYPSIIISHNIDPSTVCTDCTDYYESPNGTKF---SKSRPGIMPMILK 513

Query: 957  NLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
             L+ +R  VK   K   G     L  + QALK+T+NS YG LG++ SR+Y++  A  +T 
Sbjct: 514  LLIDQRAEVKKLYKKDKGN--IYLGSRSQALKITSNSFYGYLGYARSRWYSRECASSVTA 571

Query: 1017 QGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
             GR+ +  T+   +     +VIYGDTDSI++  G     + K  A + ++++N+K  K +
Sbjct: 572  YGRQYILQTISDAEEQ-GFKVIYGDTDSIVMLLG----GRTKEDALEFVKKLNEKLPKSM 626

Query: 1076 EIDLDGLYKRMLLLKKK--KYAAVK-VQFKDGMPYE--VIERKGLDMVRRDWSLLSKEVG 1130
            E++L+  YKR + + KK  K  A+   + K  M  E   I+ +G ++VRRDWS ++++  
Sbjct: 627  ELELEDFYKRAVFVGKKSEKIGAITGAKKKYAMISESGFIKIRGFELVRRDWSRIARDTQ 686

Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
               L  IL+E S E  VE + N    V +D+R G+V +    I+  L K  ++Y DA   
Sbjct: 687  RKVLDTILNEGSAEKAVEIVKN----VIKDLRDGKVPIGMLAISTQLRKGIDSY-DA-TS 740

Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
            P +  A +  ++G  T       V   +    G+S      + + A++ D          
Sbjct: 741  PELSAAKKAVKAGLKTKDEVEHAVISYVITRDGSSISDKAVLEEFAKNYDP--------- 791

Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPE 1278
               +YY + Q+ P V R+   +  T  E
Sbjct: 792  ---EYYINHQVVPSVMRILKELNLTEDE 816


>gi|403333149|gb|EJY65649.1| DNA polymerase [Oxytricha trifallax]
          Length = 1272

 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 209/413 (50%), Gaps = 45/413 (10%)

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--------------ERSPD 936
            Y G +V+EP +G Y   + +LDF SLYPSI+  +N+C++T+              ER+P+
Sbjct: 748  YEGAVVIEPIRGFYQDPVAILDFASLYPSIMMAHNLCYSTLVPPYKLKDIDVSMYERTPN 807

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMY 995
            G    +  S   GVLP +L+ L+Q RR VK+ + +T    +I+ LD +Q ALK +ANS+Y
Sbjct: 808  GDY-FVKKSVKKGVLPIILEELIQARRRVKSELQRTTDPYEIKILDSRQNALKTSANSVY 866

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMI 1047
            G  G    +    P++  +T  GR +L  T +LV+   ++        EVIYGDTDS+MI
Sbjct: 867  GFTGAQVGQLPCLPISCSVTAYGRRMLDMTKNLVKEKFSVKEGYQYDSEVIYGDTDSVMI 926

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
              G   I +   +  +  + V   +   ++++ + +Y   LL+ KK+YA   + + + + 
Sbjct: 927  KFGCKTIEETMVLGKEAAEYVTSFFADPIKLEFEKIYCPYLLMNKKRYAG--LLWTNPIK 984

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
            Y+ I+ KG++ VRRD   L K+V +  L +IL ERS ED +    N    V  D+   ++
Sbjct: 985  YDKIDAKGIETVRRDNCPLVKDVVNTVLKKILVERSYEDAI----NYCKGVISDLLQNRI 1040

Query: 1167 ALEKYVITKTLTKPPEAYPDAKN-------QPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             L   VIT+ L K  +    + +       Q HV++A ++++   ++  S GD + +++ 
Sbjct: 1041 DLSLLVITRGLGKKAKKINSSDDKEVYQAKQAHVELAEKMRKRDEASAPSVGDRIAFVMV 1100

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
              +GT            +  D L   D    ID  +Y   Q+   + R+   I
Sbjct: 1101 --KGTKDAKGY-----EKSEDPLYVLDNNLPIDYQHYLQHQLKQPLIRIFEPI 1146


>gi|396485292|ref|XP_003842135.1| similar to catalytic subunit DNA polymerase delta [Leptosphaeria
            maculans JN3]
 gi|312218711|emb|CBX98656.1| similar to catalytic subunit DNA polymerase delta [Leptosphaeria
            maculans JN3]
          Length = 1115

 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 202/823 (24%), Positives = 360/823 (43%), Gaps = 137/823 (16%)

Query: 496  FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
            F++  KV G SW+ +   K+       R S C+ E  +    D+   SS    A++ P+ 
Sbjct: 252  FMIDTKVAGMSWVEVPAGKYRMIEQRDRHSNCQIEAQMHY-SDLIAHSSEGEWAKLAPLR 310

Query: 554  VTAINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
            + + ++     K VF    D++ ++  + V     + D P + +             V  
Sbjct: 311  ILSFDIECAGRKGVFPD-ADIDPVIQIANVVTRYGE-DKPFVRN-------------VFC 355

Query: 609  LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
            LD  + P+              + VL  E  E  +L +    L ++D DV++G+N S FD
Sbjct: 356  LDT-VSPI------------VATQVLSYED-EGEMLMKWRDFLEEVDPDVIIGYNTSNFD 401

Query: 669  LDVLLHRAQ---VCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLC 725
               LL RA+   + R P   WS++  ++ S++   +      G+  +    +   GRL  
Sbjct: 402  FPYLLDRAKHLKLARFP--YWSRLKTVQ-SKVDSSKFSSKQLGNRDTK--TTNTNGRLQL 456

Query: 726  DTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAW 784
            D     +   +  SY+L  +    L + +++V    + ++F     S   L  Y   DA+
Sbjct: 457  DLLQLIQRDHQLRSYTLNSVCAHFLKEQKEDVHHSMITELFNGDANSRRRLAVYCLKDAY 516

Query: 785  LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFT 842
            L   L+  L  L    ++  ++G  +   L  AR Q+V ++  L       + IVPD   
Sbjct: 517  LPQRLLDKLMCLVNYTEMARVTGVPFNYLL--ARGQQVRFISQLFRKALDHQLIVPD--- 571

Query: 843  YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKG 902
                                   L N+  + D                Y G  V+EPK+G
Sbjct: 572  -----------------------LPNQGDSTDQ---------------YEGATVIEPKRG 593

Query: 903  LYDKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSS 945
             Y + +  LDF SLYPSI+Q +N+C+T      TVE+           +P+G +    ++
Sbjct: 594  YYKQPVATLDFASLYPSIMQAHNLCYTTWLDKQTVEKLKMKKDEDYIVTPNGDM--FCTA 651

Query: 946  KT-TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
            KT  G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK++ANS+YG  G +N 
Sbjct: 652  KTRKGLLTQILEELLGARKKAKRELAVETDPFKKAVLNGRQLALKVSANSVYGLTGATNG 711

Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDSIMIHSGIDDIA 1055
            +     +A   T  GR+++  T   V+   N+        EVIYGDTDS+M+  G  ++A
Sbjct: 712  KLPCLAIASSTTSFGRQMIEKTKAEVEAKYNIANGYSHDAEVIYGDTDSVMVKFGTSELA 771

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA   + + +   ++ ++ KG
Sbjct: 772  EAMRLGQEAADYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYWTNPNKWDKMDTKG 829

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD   L + V +  L  +L ++  E   E +  ++     D+   ++ +   VIT
Sbjct: 830  IETVRRDNCRLVQTVIETSLRMLLIDQDPEGAQEFVKETI----SDLLQNKIDMSNLVIT 885

Query: 1175 KTLTKPPEAYPD---AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
            K LTK  +       A  Q HV++A R+K+    +    GD V Y++         ++ G
Sbjct: 886  KALTKQEDKEGKGGYANKQAHVELAERMKKRDAGSAPGLGDRVAYVMV-------RAATG 938

Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                 +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 939  ARNFEKSEDPIYVLENNLPIDTRYYLDNQLAKPLGRIFEPILG 981


>gi|367000613|ref|XP_003685042.1| hypothetical protein TPHA_0C04580 [Tetrapisispora phaffii CBS 4417]
 gi|357523339|emb|CCE62608.1| hypothetical protein TPHA_0C04580 [Tetrapisispora phaffii CBS 4417]
          Length = 1096

 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 192/799 (24%), Positives = 348/799 (43%), Gaps = 137/799 (17%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++  SK+       ++S C+ E++++  +D+    +    +   P+ + + ++
Sbjct: 263  IVGMSWITLPKSKYKLITEQNKISNCQLEVSINY-RDLISHPAEGDWSHSAPLRILSFDI 321

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      VF + +  + I  A+VV    AK           +P + + FTV         
Sbjct: 322  ECAGRIGVFPEPEHDSVIQIANVVSIAGAK-----------RPFIRNVFTV--------- 361

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
                     D  S    + +     E  +L +    + K D DV++G+N S FDL  L+ 
Sbjct: 362  ---------DTCSPITGSHIFSHEKEEDMLRQWREFVVKADPDVIIGYNTSNFDLPYLID 412

Query: 675  RAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732
            RA+  +V  + +   GRL     E+ +       +G+ +S  +   I GRL  D     +
Sbjct: 413  RAKALKV--NEFPYFGRLVNVNQEVKESTFSSKAYGTRSSKNVN--IDGRLQLDLLQFVQ 468

Query: 733  DLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELM 790
               +  SY+L  ++   L + +++V  + ++   Q    E+   L  Y   DA+L + L+
Sbjct: 469  REYKLRSYTLNAVSAHFLGEQKEDVH-YSIITDLQNGDSETRRRLAVYCLKDAYLPLRLL 527

Query: 791  FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
             +L  L    +++ ++G  +   L   +  +V   L         ++P+         M 
Sbjct: 528  ENLMALVNYTEMSRVTGVPFSYLLSRGQQIKVVSQLFRKCLEIDTLIPN---------MG 578

Query: 851  KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILL 910
             Q S+                                   Y G  V+EP +G YD  I  
Sbjct: 579  SQGSDE---------------------------------QYEGATVIEPIRGYYDLPIAT 605

Query: 911  LDFNSLYPSIIQEYNICFT------TVER-----SPDGLVP-----HLPSSKTTGVLPEL 954
            LDFNSLYPSI+  +N+C+T      TV+R     + D ++       + + K  G+LP +
Sbjct: 606  LDFNSLYPSIMMAHNLCYTTLCNRETVQRLDLKLNEDYIITPNNDYFVTTKKRHGILPII 665

Query: 955  LKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
            L  L+  R+  K  +K      K   L+ +Q ALK++ANS+YG  G +  +     ++  
Sbjct: 666  LNELISARKRAKNDLKNEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSS 725

Query: 1014 ITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVI 1065
            +T  GR+++ +T + VQ   +++        V+YGDTDS+M+  G  D+ +A  +  +  
Sbjct: 726  VTAFGRDMIMTTKNAVQEKYSIKNGYKNDAVVVYGDTDSVMVKFGTSDLGEAMELGTEAA 785

Query: 1066 QEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
              V+  +K  + ++ +  Y   LL+ KK+YA   + +     Y+ +++KGL  VRRD   
Sbjct: 786  AYVSSLFKDPINLEFEKAYFPYLLINKKRYAG--LYWTKTEKYDKLDQKGLASVRRDSCP 843

Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
            L   V +  L  IL ER+ +  +  I +    V +++   +  + K +I+KTL       
Sbjct: 844  LVSIVMNKVLKMILIERNVDGALAYIKS----VIDELLHNKADISKLIISKTLA------ 893

Query: 1185 PDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELK 1243
            P+  N QPH  +  R+K+     G + GD V YII        G +  +  RA  P  L 
Sbjct: 894  PNYTNPQPHQVLTERMKRRD-GVGPNVGDRVDYIII-------GGNDKLYNRAEDP--LY 943

Query: 1244 KGDGKWMIDIDYYASQQIH 1262
              +    +D  YY + Q+ 
Sbjct: 944  ALEHNIQVDSRYYLTNQLQ 962


>gi|11498108|ref|NP_069333.1| DNA polymerase B1 [Archaeoglobus fulgidus DSM 4304]
 gi|3122019|sp|O29753.1|DPOL_ARCFU RecName: Full=DNA polymerase
 gi|2650130|gb|AAB90741.1| DNA polymerase B1 (polB) [Archaeoglobus fulgidus DSM 4304]
          Length = 781

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 168/673 (24%), Positives = 301/673 (44%), Gaps = 128/673 (19%)

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            +     ER +++  +  +   D D++VG+N   FD   L  RA+   +P      +GR  
Sbjct: 198  IILTGDERKIISDFVKLIKSYDPDIIVGYNQDAFDWPYLRKRAERWNIPLD----VGR-- 251

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRL---LCDTFLCSRDLLREVSYSLTQLAKTQL 750
                     G  +   G  P I     GRL   L D  +   D+  +   ++ +   T++
Sbjct: 252  --------DGSNVVFRGGRPKI----TGRLNVDLYDIAMRISDIKIKKLENVAEFLGTKI 299

Query: 751  NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
              +  ++   D+ + +   E   +++ Y   DA  +   +    +LP+  +L+ +     
Sbjct: 300  --EIADIEAKDIYRYWSRGEK-EKVLNYARQDAINTY--LIAKELLPMHYELSKMIRLPV 354

Query: 811  GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
                +  R ++V++LLL   +    I P                                
Sbjct: 355  DDVTRMGRGKQVDWLLLSEAKKIGEIAP-------------------------------- 382

Query: 871  ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI---- 926
                N   H +        +Y G  VLEP++GL++  +  LDF S+YPSI+  +NI    
Sbjct: 383  ----NPPEHAE--------SYEGAFVLEPERGLHEN-VACLDFASMYPSIMIAFNISPDT 429

Query: 927  --CFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLKIQQLDI 982
              C      +P+  V H       G    +L+ L+++RR +K  +K  S    + + LDI
Sbjct: 430  YGCRDDCYEAPE--VGHKFRKSPDGFFKRILRMLIEKRRELKVELKNLSPESSEYKLLDI 487

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +QQ LK+  NS YG +G++ +R+Y  P AE  T  GR  +R++  + + ++  +V+YGDT
Sbjct: 488  KQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAWGRHFIRTSAKIAE-SMGFKVLYGDT 546

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            DSI +          K    ++I +++++   ++I++D  Y  +  ++KK+YA +    +
Sbjct: 547  DSIFVTKA----GMTKEDVDRLIDKLHEELP-IQIEVDEYYSAIFFVEKKRYAGLT---E 598

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
            DG     +  KGL++ R DW  L+K+V    +  IL E++ E  +  + + +++++E   
Sbjct: 599  DGR----LVVKGLEVRRGDWCELAKKVQREVIEVILKEKNPEKALSLVKDVILRIKE--- 651

Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
             G+V+LE+ VI K LTK P  Y     Q HV+ AL+ ++ G     S+   + Y+I    
Sbjct: 652  -GKVSLEEVVIYKGLTKKPSKYESM--QAHVKAALKAREMGIIYPVSS--KIGYVIVKGS 706

Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWM------------IDIDYYASQQIHPVVSRLC- 1269
            G        I  RA   D ++  DG+ +            +D DYY   QI P V R+  
Sbjct: 707  GN-------IGDRAYPIDLIEDFDGENLRIKTKSGIEIKKLDKDYYIDNQIIPSVLRILE 759

Query: 1270 ------ASIEGTS 1276
                  AS++G+S
Sbjct: 760  RFGYTEASLKGSS 772


>gi|3480|emb|CAA33504.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 1093

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 175/675 (25%), Positives = 307/675 (45%), Gaps = 100/675 (14%)

Query: 623  TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
            +D  S    +++   ++E  +L+     + K+D DV++G+N + FD+  LL+RA+  +V 
Sbjct: 360  SDTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVN 419

Query: 683  SSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
               +   GRLK  + E+ +       +G+  +  +   I GRL  D     +   +  SY
Sbjct: 420  D--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNVN--IDGRLQLDLLQFIQREYKLRSY 475

Query: 741  SLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPL 798
            +L  ++   L + +++V  + ++   Q    E+   L  Y   DA+L + LM  L  L  
Sbjct: 476  TLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVN 534

Query: 799  TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858
              ++  ++G  +   L  AR Q+++            +V   F                 
Sbjct: 535  YTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF----------------- 563

Query: 859  EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
              R   E+     N  +  S +          Y G  V+EP +G YD  I  LDFNSLYP
Sbjct: 564  --RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYYDVPIATLDFNSLYP 612

Query: 919  SIIQEYNICFT------TVER-----SPDGLVPH----LPSSKTTGVLPELLKNLVQ-RR 962
            SI+  +N+C+T      TVER       D ++ +    + + +  G+LP +L  L+  R+
Sbjct: 613  SIMMAHNLCYTTLCNKATVERLNLKIDEDYVIHYGDYFVTTKRRRGILPIILDELISARK 672

Query: 963  RMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
            R  K         K   L+ +Q ALK++ANS+YG  G +  +     ++  +T  GR ++
Sbjct: 673  RAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAYGRTMI 732

Query: 1023 RSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC 1074
              T   VQ    ++        V+YGDTDS+M+  G  D+ +A  +  +  + V+  +K 
Sbjct: 733  LKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKH 792

Query: 1075 -LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
             + ++ +  Y   LL+ KK+YA +     D   ++ +++KGL  VRRD   L   V +  
Sbjct: 793  PINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLASVRRDSCSLVSIVMNKV 850

Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKN-QPH 1192
            L +IL ER+ +  +     ++     D+   +V + K +I+KTL       P+  N QPH
Sbjct: 851  LKKILIERNVDGALAFDRETI----NDILHNRVDISKLIISKTLA------PNYTNPQPH 900

Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
              +A R+K+     G + GD V Y+I        G +  +  RA  P  L   +    +D
Sbjct: 901  AVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRAEDP--LFVLENNIQVD 950

Query: 1253 IDYYASQQI-HPVVS 1266
              YY + Q+ +P++S
Sbjct: 951  SRYYLTNQLQNPIIS 965


>gi|407927598|gb|EKG20487.1| DNA-directed DNA polymerase family B pol2 [Macrophomina phaseolina
            MS6]
          Length = 1097

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 172/674 (25%), Positives = 305/674 (45%), Gaps = 110/674 (16%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ---VCRVPSSMWSKIGRLKRS 695
            +E  +L +    L + D DV++G+NI+ FD   LL RA+     R P   WS++    R+
Sbjct: 362  TEEKMLMKWRDFLEEADPDVIIGYNIANFDFPYLLDRAKHLKCGRFP--YWSRL----RN 415

Query: 696  EMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQL 750
             M + ++  T F S   G      +   GR+  D   L  RD  LR  SY+L  +    L
Sbjct: 416  TMSQAKE--TNFSSKQMGNRDTKATNTNGRIQLDLLQLVQRDYHLR--SYTLNSVCAHFL 471

Query: 751  NKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
             + +++V    + ++F     S   L  Y   DA+L M L+  L  L    ++  ++G  
Sbjct: 472  GEQKEDVHHTMITELFNGDSNSRRRLAVYCLKDAYLPMRLLDKLMCLVNYTEMARVTGVP 531

Query: 810  WGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
            +   L  +R Q+V++L  L      ++ ++P                       N+   +
Sbjct: 532  FSFLL--SRGQQVKFLSQLYRKALEQQLVIP-----------------------NLRSES 566

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
            +ED                    Y G  V+EP +G YD  I  LDF SLYPS+IQ +N+C
Sbjct: 567  SEDQ-------------------YEGATVIEPTRGYYDVPIATLDFASLYPSVIQAHNLC 607

Query: 928  FTT------VER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
            +TT      VE+           +P+G +    +    G+L ++ + L+  R+  K  M 
Sbjct: 608  YTTLLNKNSVEKLGLKKDEDYIVTPNGDL-FCTTKVRKGLLTQIFEELLGARKQAKKEMG 666

Query: 971  TASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV 1029
                  K   L+ +Q ALK++ANS+YG  G +N +     +A   T  GR+++  T ++V
Sbjct: 667  LEQDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCLAIASSTTSYGRQMIEKTKEVV 726

Query: 1030 QNNLNL--------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLD 1080
            + +  +        +VIYGDTDS+M+  G+ ++ K   +  +  + V+  + K ++++ +
Sbjct: 727  EKHYTIANGYSHDAQVIYGDTDSVMVKFGVKELDKTMELGEEAAKFVSSHFTKPIKLEFE 786

Query: 1081 GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
             +Y   LL+ KK+YA   + + +   ++ ++ KG++ VRRD   L + V +  L  +L +
Sbjct: 787  KVYFPYLLINKKRYAG--LYWTNPNKWDKMDTKGIETVRRDNCRLVQTVIETSLRMLLID 844

Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
            R      + +  ++     D+   ++ +   VITK L K       A  Q HV++A R+K
Sbjct: 845  RDVNGAQDFVKETI----SDLLQNKIDMSNLVITKALAKSDY----AAKQAHVELAERMK 896

Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ 1260
            +    +  + GD V Y+I   +G +   +       +  D +   +    ID  YY   Q
Sbjct: 897  KRDAGSAPALGDRVAYVIV--KGANDSKNY-----EKSEDPIYVLENNLPIDTKYYLDNQ 949

Query: 1261 IHPVVSRLCASIEG 1274
            +   + R+   I G
Sbjct: 950  LAKPLGRIFEPILG 963


>gi|221487122|gb|EEE25368.1| DNA polymerase delta catalytic subunit, putative [Toxoplasma gondii
            GT1]
          Length = 1268

 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 218/828 (26%), Positives = 358/828 (43%), Gaps = 110/828 (13%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD-SPKDIRVSSSSKHVAEVPPVTV 554
            +LV  K  G SWL     +    P  +     ++ +D    D+     ++   ++PP+ +
Sbjct: 387  YLVDTKTTGCSWLLGRGGAYVVRPASLQETSAQLELDIHYADLLPLPPAERWQKLPPLRI 446

Query: 555  TAINLKTVFNKRQDVNE------IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             + +++ V  K +   E      I  +S+V       D P L SE       +     RK
Sbjct: 447  LSFDIECVKLKGEGFPEAETDPVIQISSIVMLQSVPADLPGL-SETDTNAATASVAKARK 505

Query: 609  --LDGGI-FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
              L GG+  P+     A    +    +V+     E+ +L +    + ++D D L G+N  
Sbjct: 506  KRLSGGLERPLCRVLFALKECASIAGSVVLWFDDEKEMLAKWAEFVRQVDPDFLSGYNCV 565

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGR 722
             FDL+ L+ RA   +V    ++++ +LK  E  K+R   + F S   G   G      GR
Sbjct: 566  NFDLNYLITRAATLKVVG--FNRLSKLKSLE-SKIRD--SSFSSRALGTHEGKDIATEGR 620

Query: 723  LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE-YGET 781
            +  D     R   +  SYSL  ++   L + +++V  + +  +F+   S    I  Y   
Sbjct: 621  IQFDLLELVRRDYKLKSYSLNFVSFEFLKEQKEDVHYNMIGDLFRGCPSSRRRIGVYCLK 680

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L + L+  L  L    +++ ++G      L   +  +V   LL   +   Y+VP   
Sbjct: 681  DAYLPLRLLKELLFLYNYVEMSRVTGTPLNFLLTRGQQIKVTAQLLRKCKELNYVVP--- 737

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
              VK T                                     G     Y G  VLEP+K
Sbjct: 738  -VVKRTG------------------------------------GDNSVQYEGATVLEPRK 760

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--------PDGLV------PHLPSSKT 947
            G YDK I  LDF SLYPSI+  +NIC++T+  S        PD +       PH    K 
Sbjct: 761  GFYDKPIATLDFASLYPSIMIAHNICYSTLVASSAAHTMNNPDDVTVTTTSPPHKFVKKH 820

Query: 948  T--GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM-YGCLGFSNS 1003
               GVLP +++ L+  R+  +  M  A   +  Q L+ +Q ALK++ANS+       +  
Sbjct: 821  IRRGVLPMIVEELIAARKAARKEMAAAKDEMTRQVLNGRQLALKISANSVYGYTGTTTGG 880

Query: 1004 RFYAKPLAELITQQGREILRSTVDLV--------QNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            +     +A  IT  GR+++  T   V        Q+  N  VIYGDTDS+M+  G   IA
Sbjct: 881  QLPCLEVATTITCFGRDMIDFTRREVEKMFCRDNQHACNATVIYGDTDSVMVDFGDFSIA 940

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +  Q ++ K+ K + ++ + +Y   LL+ KK+YA   + +     Y+ I+ KG
Sbjct: 941  EAMKLGEEAAQALSAKFVKPIRLEFEKVYCPFLLMNKKRYAG--LLYTRPEKYDKIDSKG 998

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD+SLL + + D  L ++L ++  E   E     + ++ ++    ++ L   V T
Sbjct: 999  IETVRRDFSLLVQTMADTVLRKMLIDKDVEAAKEYTRRKVAELLQN----KIDLSLLVQT 1054

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K+L K           PHV++A +L++    T  S GD V Y++   QG       G AQ
Sbjct: 1055 KSLGK----MDYDTRLPHVELAKKLRKRDAGTAPSVGDRVSYVVI--QGAK-----GQAQ 1103

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG--TSPERL 1280
              R  D L   +    ID  +Y      P    LC   EG  ++PE L
Sbjct: 1104 YERAEDPLYVLENNLPIDTQHYLEGIKKP----LCRIFEGVMSNPESL 1147


>gi|12275270|emb|CAC22336.1| DNA polymerase [Leishmania major]
          Length = 286

 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 158/313 (50%), Gaps = 61/313 (19%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLAKTQ----LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA       + K      P   +    M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K  +     
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRGRD---- 176

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
                                  +D   GKR   Y GG+VL+PK GLY  YILLLDFNSL
Sbjct: 177 -----------------------DDEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSL 213

Query: 917 YPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNL 958
           YPS+IQE++ICFTTV+R          P+ L+    S    G         VLP+++K+L
Sbjct: 214 YPSLIQEFSICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSL 271

Query: 959 VQRRRMVKTWMKT 971
           V  RR VK  MKT
Sbjct: 272 VDSRREVKRLMKT 284


>gi|302349152|ref|YP_003816790.1| DNA polymerase 2 [Acidilobus saccharovorans 345-15]
 gi|302329564|gb|ADL19759.1| DNA polymerase 2 [Acidilobus saccharovorans 345-15]
          Length = 802

 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 174/662 (26%), Positives = 293/662 (44%), Gaps = 121/662 (18%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
            S++ L+ + +  + + D DV+VG+N + FD   LL RA+V  V                 
Sbjct: 226  SDKELIQKFVDVIRRKDPDVIVGYNQNSFDWPYLLERAKVNGV----------------- 268

Query: 699  KLRKGRTIFGSGASPGIMSCIA--GRLLCDTFLCSRDL-------LREVSYSLTQLAKTQ 749
            KL  GR   G+  +P +   I+  GRL  D +  + ++       L EV+  L  + K +
Sbjct: 269  KLEVGRK-RGAEPNPSVFGHISVQGRLNVDLYNFAEEIEEVKVKTLDEVADYLGVMPKDK 327

Query: 750  LNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNL 809
                R  V    + + +   E    L+ Y   D   ++ L +    LP   QL+ ISG  
Sbjct: 328  ----RVNVDWWRIAEYWDDSEKRKTLLAYNMDDVTSTLGLAYQF--LPFGAQLSQISGLP 381

Query: 810  WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
              +    + A R+E   +   R    +VP++                       EE T E
Sbjct: 382  LDQVAAASVAFRLEMRFMREARKLGELVPNR----------------------AEEETRE 419

Query: 870  DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
                                 Y G +VLEPK G++   + +LDF S+YPSI+ +YN+   
Sbjct: 420  LET------------------YTGAIVLEPKPGIHHN-VAVLDFASMYPSIMVKYNVGPD 460

Query: 930  TVERSPDGL--------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQ 979
            T+ +  +          V H   +        +L+  ++ R  VK  MK       + + 
Sbjct: 461  TLLKEGEACERVNEAPGVRHRFCADRDAFFKRVLERFLKWRAEVKAAMKKYPEGSPQYRL 520

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
            L+ +Q+A+K+ AN+ YG +G++ +R+Y +  AE +T  GR+++     L + +L L+V Y
Sbjct: 521  LNERQRAIKVLANASYGYMGWAGARWYCRQCAESVTAWGRDLITRAASLAR-SLGLKVYY 579

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVK 1098
            GDTDS+ + +  + +        KVI+ + K  +  +I +D +Y R+   + KK+YA + 
Sbjct: 580  GDTDSLFVENDPEKVE-------KVIEGITKGLE-FDIKIDKVYSRVFFTEAKKRYAGLT 631

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
             + K       I+  G + VR DWS L+K+        +L        V+ +     +V 
Sbjct: 632  PEGK-------IDIVGFEAVRGDWSDLAKDTQAKVAEIVLRSDDVRKAVDYVR----QVI 680

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             D+R+G+V +EK +I KTLTK  + Y      PHV VA  +++ G+      G  + Y+I
Sbjct: 681  NDLRNGKVEVEKLIIWKTLTKSVDKY--EAEAPHVYVAKMMEKLGFK--IDVGSKIGYVI 736

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
                G        +++RAR    +K  D    ID++YY  +QI P   R+  S  G S  
Sbjct: 737  VKGDGP-------LSRRARPYFLVKPQD----IDVNYYIDKQIVPAALRIL-SFFGISER 784

Query: 1279 RL 1280
             L
Sbjct: 785  EL 786


>gi|237831459|ref|XP_002365027.1| DNA polymerase delta catalytic subunit, putative [Toxoplasma gondii
            ME49]
 gi|211962691|gb|EEA97886.1| DNA polymerase delta catalytic subunit, putative [Toxoplasma gondii
            ME49]
 gi|221506807|gb|EEE32424.1| DNA polymerase delta catalytic subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1268

 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 218/828 (26%), Positives = 359/828 (43%), Gaps = 110/828 (13%)

Query: 496  FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD-SPKDIRVSSSSKHVAEVPPVTV 554
            +LV  K  G SWL     +    P  +     ++ +D    D+     ++   ++PP+ +
Sbjct: 387  YLVDTKTTGCSWLLGRGGAYVVRPASLQETSAQLELDIHYADLLPLPPAERWQKLPPLRI 446

Query: 555  TAINLKTVFNKRQDVNE------IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
             + +++ V  K +   E      I  +S+V       D P L SE       +     RK
Sbjct: 447  LSFDIECVKLKGEGFPEAETDPVIQISSIVMLQSVPADLPGL-SETDTNAATACVAKARK 505

Query: 609  --LDGGI-FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNIS 665
              L GG+  P+     A    +    +V+     E+ +L +    + ++D D L G+N  
Sbjct: 506  KRLSGGLERPLCRVLFALKECASIAGSVVLWFDDEKEMLAKWAEFVRQVDPDFLSGYNCV 565

Query: 666  GFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGR 722
             FDL+ L+ RA   +V    ++++ +LK  E  K+R   + F S   G   G      GR
Sbjct: 566  NFDLNYLITRAATLKVVG--FNRLSKLKSLE-SKIRD--SSFSSRALGTHEGKDIATEGR 620

Query: 723  LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE-YGET 781
            +  D     R   +  SYSL  ++   L + +++V  + +  +F+   S    I  Y   
Sbjct: 621  IQFDLLELVRRDYKLKSYSLNFVSFEFLKEQKEDVHYNMIGDLFRGCPSSRRRIGVYCLK 680

Query: 782  DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
            DA+L + L+  L  L    +++ ++G      L   +  +V   LL   +   Y+VP   
Sbjct: 681  DAYLPLRLLKELLFLYNYVEMSRVTGTPLNFLLTRGQQIKVTAQLLRKCKELNYVVP--- 737

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
              VK T                                     G     Y G  VLEP+K
Sbjct: 738  -VVKRTG------------------------------------GDNSVQYEGATVLEPRK 760

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--------PDGLV------PHLPSSKT 947
            G YDK I  LDF SLYPSI+  +NIC++T+  S        PD +       PH    K 
Sbjct: 761  GFYDKPIATLDFASLYPSIMIAHNICYSTLVASSAAHTMNNPDDVTVTTTSPPHKFVKKH 820

Query: 948  T--GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM-YGCLGFSNS 1003
               GVLP +++ L+  R+  +  M  A   +  Q L+ +Q ALK++ANS+       +  
Sbjct: 821  IRRGVLPMIVEELIAARKAARKEMAAAKDEMTRQVLNGRQLALKISANSVYGYTGTTTGG 880

Query: 1004 RFYAKPLAELITQQGREILRSTVDLV--------QNNLNLEVIYGDTDSIMIHSGIDDIA 1055
            +     +A  IT  GR+++  T   V        Q+  N  VIYGDTDS+M+  G   IA
Sbjct: 881  QLPCLEVATTITCFGRDMIDFTRREVEKMFCRDNQHACNATVIYGDTDSVMVDFGDFSIA 940

Query: 1056 KAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKG 1114
            +A  +  +  Q +++K+ K + ++ + +Y   LL+ KK+YA   + +     Y+ I+ KG
Sbjct: 941  EAMKLGEEAAQALSEKFVKPIRLEFEKVYCPFLLMNKKRYAG--LLYTRPEKYDKIDSKG 998

Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
            ++ VRRD+SLL + + D  L ++L ++  E   E     + ++ ++    ++ L   V T
Sbjct: 999  IETVRRDFSLLVQTMADTVLRKMLIDKDVEAAKEYTRRKVAELLQN----KIDLSLLVQT 1054

Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
            K+L K           PHV++A +L++    T  S GD V Y++   QG       G AQ
Sbjct: 1055 KSLGK----MDYDTRLPHVELAKKLRKRDAGTAPSVGDRVSYVVI--QGAK-----GQAQ 1103

Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG--TSPERL 1280
              R  D L   +    ID  +Y      P    LC   EG  ++PE L
Sbjct: 1104 YERAEDPLYVLENNLPIDTQHYLEGIKKP----LCRIFEGVMSNPESL 1147


>gi|67900676|ref|XP_680594.1| hypothetical protein AN7325.2 [Aspergillus nidulans FGSC A4]
 gi|40742186|gb|EAA61376.1| hypothetical protein AN7325.2 [Aspergillus nidulans FGSC A4]
 gi|259483322|tpe|CBF78614.1| TPA: catalytic subunit of DNA polymerase delta (Eurofung)
            [Aspergillus nidulans FGSC A4]
          Length = 1044

 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 155/597 (25%), Positives = 282/597 (47%), Gaps = 88/597 (14%)

Query: 651  LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
            + K+D DV++G+NI+ FD   LL RA+  +  +   W+++  + RSE           G+
Sbjct: 380  IQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRLNGM-RSEAKDTNFSSKQMGN 438

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-T 768
              +    +   GRL  D     +      SY+L  ++   L + +++V    + +++  T
Sbjct: 439  RDTKATNT--NGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDVHHTMITELYNGT 496

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--L 826
             +S   L  Y   DA+L   LM  L  L    ++  ++G  +   L  +R Q+V++L  L
Sbjct: 497  PDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLSQL 554

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
                  ++ ++P                       N++    +D                
Sbjct: 555  YRKALQQQLVIP-----------------------NMKSTDEQD---------------- 575

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER------------- 933
                Y G  V+EP +  YD  I  LDF SLYPSIIQ +N+C+TT+               
Sbjct: 576  ----YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDY 631

Query: 934  --SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLT 990
              +P+G +   P  +  G+L ++L+ L+  R+  K  + +     K   L+ +Q ALK++
Sbjct: 632  IVTPNGDMFCTPKVR-KGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVS 690

Query: 991  ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDT 1042
            ANS+YG  G +  +     +A   T  GR+++  T   V+    +        +VIYGDT
Sbjct: 691  ANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDT 750

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQF 1101
            DS+M+  G+ ++ +A  +  +  + V+ K+ K ++++ + +Y   LL+ KK+YA   + +
Sbjct: 751  DSVMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG--LYW 808

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
             +   Y+ ++ KG++ VRRD  LL + V +  L +IL +R  E   E + +++     D+
Sbjct: 809  TNPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTI----SDL 864

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
               ++ + K VITK LTK  ++Y     Q HV++A R+++    +  + GD V Y+I
Sbjct: 865  LQNKIDMSKLVITKALTK--DSY--TAKQAHVELAERMRKRDAGSAPTLGDRVAYVI 917


>gi|402588589|gb|EJW82522.1| DNA polymerase [Wuchereria bancrofti]
          Length = 638

 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 208/417 (49%), Gaps = 42/417 (10%)

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG----------LVP 940
            Y G  V++P +G Y+  I  LDF SLYPSI+  +N+C+TT+ R  +           + P
Sbjct: 144  YEGATVIDPIRGFYNTPIATLDFASLYPSIMIAHNLCYTTLIRGSNATHNLSDSDFEVTP 203

Query: 941  ----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMY 995
                 + S+   G+LP++L++L+  R+  K  +K      +   L+ +Q ALK++ANS+Y
Sbjct: 204  SNNRFVKSNIRRGLLPQVLEDLLNARKQAKNDLKNEKDPFRRMVLNGRQLALKISANSVY 263

Query: 996  GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN-----------NLNLEVIYGDTDS 1044
            G  G S  +     +++ +T  GR+++  T   V+              N +VIYGDTDS
Sbjct: 264  GFTGASVGKLPCLEISQSVTAYGRQMIDLTKSAVEEIYKEGYLDGKCPCNAQVIYGDTDS 323

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            +M+  G+ D+  A  +      EV+KK+   ++++ + +Y   LL+ KK+YA   + F  
Sbjct: 324  VMVKFGVKDVKAAMELGLHAATEVSKKFIPPIKLEFEKVYSPFLLINKKRYAG--LYFTR 381

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
               ++ I+ KGL+ VRRD   L  +V   CL ++L E      +E       KV  D+  
Sbjct: 382  PEKHDKIDCKGLETVRRDNCPLVSKVLSTCLEKMLLEGDATSALEHAK----KVISDLLC 437

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             ++ + + +ITK LT+   AY  A  Q HV +A R+++    +    GD VPY+I     
Sbjct: 438  NRIDISELIITKELTRSSNAY--AAKQAHVVLAERMRERDSGSAPRLGDRVPYVI----- 490

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
             + G  V   ++A  P  + + +    ID  YY   Q+   ++R+   I G   E +
Sbjct: 491  VAKGQKVPAYEKAEDPIYVLQNN--IPIDTAYYLENQLAKPLARIFEPILGDKAESI 545


>gi|218884606|ref|YP_002428988.1| DNA polymerase II [Desulfurococcus kamchatkensis 1221n]
 gi|218766222|gb|ACL11621.1| DNA polymerase [Desulfurococcus kamchatkensis 1221n]
          Length = 797

 Score =  166 bits (421), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 174/662 (26%), Positives = 297/662 (44%), Gaps = 133/662 (20%)

Query: 634  LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
            +  E S++ ++      + + D D++VG+N S FD   L+ RA+V    +++   +GR +
Sbjct: 214  IAEELSDKDVIAEFTDYILRYDPDIIVGYNSSRFDWPYLMERARV----NNLKLDVGR-R 268

Query: 694  RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKD 753
            R   P          S ++ G +S I GR+  D    + ++      SL  +A       
Sbjct: 269  RDGQP----------SQSTYGHIS-IPGRIHVDLLNFAEEIPEVKLKSLDIVADYLGVMK 317

Query: 754  RKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLS-----------VLPLTRQL 802
            R E          + L   +E   Y    A   + L ++L             LP   QL
Sbjct: 318  RSE----------RVLIDYIEFPRYWRDPARKPLLLRYNLDDVESTMGLAEKFLPFAMQL 367

Query: 803  TNISGNLWGKTLQGARAQRVEYLLLH-AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
            ++I+G    +    +   R+E+ L+  AFR  + ++P++                   ++
Sbjct: 368  SSITGLPLDQVGAASVGNRLEWFLMREAFRRDE-LIPNRI------------------EK 408

Query: 862  NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
             VE                          Y G +VL+P  G+++  I +LDF S+YP+I+
Sbjct: 409  EVE-------------------------PYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIM 442

Query: 922  QEYNICFTTVER-----------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
             +YNI   T+ R           +P+  V H    +  G    +L+ L+  R+ ++  MK
Sbjct: 443  IKYNIGPDTIIREGVCRESEHYVAPE--VKHCFLREPPGFFKGVLQILLSLRKQIRGEMK 500

Query: 971  T--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDL 1028
                   + + LD +Q+A+K+ AN+ YG +G+  +R+Y K  AE +T  GR  + S +D 
Sbjct: 501  KYKTDSPEYRLLDERQKAIKVLANATYGYMGWVAARWYCKECAEAVTAWGRRTILSVIDY 560

Query: 1029 VQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLL 1088
             +  + L+VIYGDTDS+ + +  D I +        + E  ++    EI +D +YKR+  
Sbjct: 561  AR-VIGLKVIYGDTDSLFVENIPDKITR--------LSEYVERELGFEIKIDKVYKRVFF 611

Query: 1089 LK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
             + KK+YA +    +DG     ++  G + VR DW+ ++KEV +     +LSE++ E  +
Sbjct: 612  TEAKKRYAGL---LEDGR----VDIVGFEAVRGDWAEIAKEVQEKVTEILLSEKNIEKAI 664

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            E + N +     ++  G++ LEK +I KTLTK  E Y      PHV  A ++K+ G    
Sbjct: 665  EYVRNIIA----ELNQGRIPLEKLIIWKTLTKSVEEY--EAEAPHVNAARKMKRMG--MK 716

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
               GD + YI+    G        I+ RA  P    K D K ++D  YY   QI P   R
Sbjct: 717  IEVGDKIGYIVVKGSGK-------ISDRA-EPYMFVK-DPK-LVDTIYYIDHQIIPAALR 766

Query: 1268 LC 1269
            + 
Sbjct: 767  IL 768


>gi|391325933|ref|XP_003737481.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Metaseiulus
            occidentalis]
          Length = 1088

 Score =  166 bits (421), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 208/413 (50%), Gaps = 39/413 (9%)

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--------ERSPDGLV 939
            G  + G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT+        +  PD  +
Sbjct: 562  GDDFTGATVIEPTRGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLNDQKMREQLKPDQYI 621

Query: 940  P------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTAN 992
                    + +S   G+LP++L++L+  R+  KT +K      + + LD +Q ALK++AN
Sbjct: 622  KTPSGDYFVKASCRKGLLPDILESLLSARKKAKTDLKNEKDPFRKKVLDGRQLALKISAN 681

Query: 993  SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV-----QNN---LNLEVIYGDTDS 1044
            S+YG  G    +     +++  T  GR+++  T   V     Q N    + +VIYGDTDS
Sbjct: 682  SVYGFTGAQVGKLPCLAISQSTTAFGRQMIDETAREVEAKYCQKNGFQYDAKVIYGDTDS 741

Query: 1045 IMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKD 1103
            +MI  G+D + +A  +  +  + V  K+ K ++++ + +Y   LL+ KK+YA +     D
Sbjct: 742  VMIKFGVDKLDEAMDLGREAAEYVTSKFVKPIKLEFEKVYYPYLLINKKRYAGLLYTRPD 801

Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
               ++ ++ KG++ VRRD   L   + + CL +IL E+  +  V    N   +   D+  
Sbjct: 802  --KHDKMDCKGIETVRRDNCPLVANLINTCLEKILIEKDPKGAV----NFAKQTIADLLC 855

Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
             ++ + + VITK LTK  E Y  A  Q HV++A R+ +    +    GD VPY+I     
Sbjct: 856  NRIDISQLVITKELTKTEEEY--AGKQAHVELANRMMKRDAGSAPKLGDRVPYVII---- 909

Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
                +S G A   +  D +   +    ID  YY   QI   + R+   I G S
Sbjct: 910  ---AASKGTAAYLKSEDPIYVLENNIPIDTQYYLENQISKPLLRIFEPILGES 959


>gi|398408323|ref|XP_003855627.1| DNA polymerase delta catalytic subunit [Zymoseptoria tritici IPO323]
 gi|339475511|gb|EGP90603.1| hypothetical protein MYCGRDRAFT_35747 [Zymoseptoria tritici IPO323]
          Length = 1107

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 164/667 (24%), Positives = 300/667 (44%), Gaps = 96/667 (14%)

Query: 639  SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEM 697
            SE  +L      L ++D DV++G+N S FD   LL RA   +V     W+++  +K +  
Sbjct: 372  SEEKMLMAWRDFLEEVDPDVIIGYNTSNFDFPYLLDRAAHLKVGKFPYWTRLKNVKSAAR 431

Query: 698  PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
                  + +   G      +   GRL  D     +   +  SY+L  ++   L + +++V
Sbjct: 432  DANFSSKQM---GNRDTKATNTNGRLQLDLLQLIQRDYQLRSYTLNSVSAHFLKEQKEDV 488

Query: 758  GPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
                + +++  T ES   L  Y   DA+L   LM  L  L    ++  ++G  +   L  
Sbjct: 489  HHTMITELYNGTPESRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNMLL-- 546

Query: 817  ARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
            +R Q+V+++  L      ++ +VP+                          L  E ++  
Sbjct: 547  SRGQQVKFISQLFRKALEQQLVVPN--------------------------LKPEGSD-- 578

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT---- 930
                            Y G  V+EP +G YD  +  LDF SLYPSI+Q +N+C+TT    
Sbjct: 579  --------------EQYEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLLNK 624

Query: 931  --VER-----------SPDGLVPHLPSSKTTGVLPELLKNLV-QRRRMVKTWMKTASGLK 976
              VE+           +P+G +    +    G+L ++L+ L+  R+R  K         K
Sbjct: 625  NAVEKLNLKKDEDYIVTPNGDL-FCTTKVRKGLLSQILEELLGARKRAKKALAVETDPFK 683

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL- 1035
               L+ +Q ALK++ANS+YG  G +N +     +A   T  GR+++  T + V+N   + 
Sbjct: 684  KAVLNGRQLALKISANSVYGLTGATNGKLPCLAIASSTTSYGRQMIERTKEEVENRYTIA 743

Query: 1036 -------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRML 1087
                   +VIYGDTDS+M+  G +D+AKA  +     + V+ K+ K ++++ + +Y   L
Sbjct: 744  NGYSHDAQVIYGDTDSVMVKFGPNDLAKAMELGQDAAEYVSSKFIKPIKLEFEKVYYPYL 803

Query: 1088 LLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147
            L+ KK+YA   + + +   Y+ ++ KG++ VRRD   L + V +  L  +L ++  +   
Sbjct: 804  LINKKRYAG--LYWTNTEKYDKMDTKGIETVRRDNCRLVQNVIETSLKMLLIDQDVQGAQ 861

Query: 1148 ESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207
            + +  ++ ++ ++    ++ +   VITK L+K       A  Q H ++A R+++    + 
Sbjct: 862  DYVKETISELLQN----RIDMSNLVITKALSK----VDYASKQAHTELAERMRKRDAGSA 913

Query: 1208 CSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
             + GD V Y++          + G     +  D +   +    ID  YY   Q+   + R
Sbjct: 914  PALGDRVAYVMV-------KGAAGAKGYEKSEDPMFVLEHNLPIDTKYYLDNQLAKPLGR 966

Query: 1268 LCASIEG 1274
            +   I G
Sbjct: 967  IFEPILG 973


>gi|296243026|ref|YP_003650513.1| replicative DNA polymerase I [Thermosphaera aggregans DSM 11486]
 gi|296095610|gb|ADG91561.1| replicative DNA polymerase I [Thermosphaera aggregans DSM 11486]
          Length = 796

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 172/632 (27%), Positives = 293/632 (46%), Gaps = 115/632 (18%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D D++VG+N + FD   LL RA V      +   +GR K S             S ++ G
Sbjct: 234  DPDIIVGYNSNRFDWQYLLERASVL----GLKLDVGRKKDSP-----------PSTSTYG 278

Query: 715  IMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE----VGPHDVLKMFQTLE 770
             +S IAGRL  D +  + ++  EV      +    L   ++E    +   D  K +    
Sbjct: 279  HVS-IAGRLNVDLYDFAEEI-PEVKIKSLDVVADYLGVMKRESRVLIDYVDFPKYWNDPS 336

Query: 771  SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 830
                L++Y E D   +M L      LP   QL+ I+     +    +   R+E+ L+H  
Sbjct: 337  KRGLLLKYNEDDVRSTMGLADKF--LPFAMQLSYITRLPLDQVGAASVGYRLEWFLMH-- 392

Query: 831  RAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPA 890
                                                   +A  +N+   N  R+ K    
Sbjct: 393  ---------------------------------------EALLNNELIPN--REEKEAET 411

Query: 891  YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG--LVPHLPSSKTT 948
            Y G +VL P KG+++  I +LDF S+YP+I+ +YN+   T+E+ PDG  +  H  + +  
Sbjct: 412  YKGAVVLTPLKGIHEN-IAVLDFTSMYPNIMIKYNVGPDTIEK-PDGCSIASHYIAPEVG 469

Query: 949  GVL----PELLKNLVQRRRMVKTW----MKT--ASGLKIQQLDIQQQALKLTANSMYGCL 998
                   P   KN++     ++      MK    + ++ + LD +Q+A+K+ AN+ YG +
Sbjct: 470  HCFRREPPGFFKNVLSMLLSLRKLLRSEMKKYPPTSMEYRLLDERQKAVKILANATYGYM 529

Query: 999  GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAK 1058
            G+  +R+Y +  AE +T  GR I+ + ++  +  + L+VIYGDTDS+ +    +D  K +
Sbjct: 530  GWLGARWYCRECAEAVTAWGRTIITAVINRAR-EMGLKVIYGDTDSLFVE---NDPVKVR 585

Query: 1059 AIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDM 1117
            ++   V +E+       EI +D +Y+R+   + KK+YA +     DG     I+  G + 
Sbjct: 586  SLVEYVERELG-----FEIKIDKVYERVFFTEAKKRYAGL---LTDGR----IDIVGFEA 633

Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
            VR DW+ L+KEV +   S +L E++ +  VE +   +  + ++    ++ +EK +I KTL
Sbjct: 634  VRGDWTELAKEVQENITSILLKEKNVDKAVEYVKTVIANLMQN----KIPVEKLIIWKTL 689

Query: 1178 TKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRAR 1237
            TK  E Y D ++ PHV  A +L++ G       GD V ++I    G        I++RA 
Sbjct: 690  TKKIEEY-DVES-PHVSAARKLEKKGLK--IDVGDKVGFVIVKGAGK-------ISERA- 737

Query: 1238 HPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
             P  L K D + +ID++YY   Q+ P   R+ 
Sbjct: 738  EPFNLAK-DPR-LIDVNYYIEHQVVPAALRIL 767


>gi|270002921|gb|EEZ99368.1| DNA polymerase delta [Tribolium castaneum]
          Length = 1050

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 163/660 (24%), Positives = 292/660 (44%), Gaps = 104/660 (15%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK------RSEMPKLRKGRTIFG 708
            D D+  G+NI+ FD   L+ RA   ++    +  +GR+       +  + + + G+  F 
Sbjct: 333  DPDIFTGYNINNFDFPYLIERANHLKL--KRFDYLGRILDIRSSIKETVTQTKIGKRTFK 390

Query: 709  SGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            S           GR+  D  +  +   +  SY+L  +++  L + +++V  + V+   Q 
Sbjct: 391  SIN-------FEGRVAYDMLMVIKRDFKLRSYTLNSVSQEILGEQKEDVH-YSVITDLQN 442

Query: 769  --LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYL 825
               ++   L  Y   DA L + ++  +       ++  ++G      L +G + + V  L
Sbjct: 443  GDEQTRRRLAVYCLKDADLPVRILSTVRSFTNDVEMARVTGVPITSLLTKGEQVKVVAQL 502

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L HA RA  Y +P                                           H+  
Sbjct: 503  LKHA-RAAGYFMPT------------------------------------------HQGA 519

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--------PDG 937
                 Y G  V+EP++G Y   I  LDF+SLYPSI+  +N+C+TT+ +          D 
Sbjct: 520  PSSEQYEGATVIEPRRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLIKPSIKEKLCLSDE 579

Query: 938  LVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKL 989
             V   P       SS   G+LP +L++L+  R+  K  +K A+   ++  LD +Q A K+
Sbjct: 580  QVTTTPANCMFVKSSVRPGLLPHILQHLLAARKKTKAELKEATDPVVRAVLDGRQLAYKI 639

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGD 1041
            +ANS+YG  G    +     ++  +T  GR ++  T   V+ +  +E        VIYGD
Sbjct: 640  SANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQEVEQHYRIENGYESDAMVIYGD 699

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M++  +  + ++  +  +    ++ K+ K ++++ + +Y   LL+ KK+YA   + 
Sbjct: 700  TDSVMVNFRVKSLERSMELGREAADLISAKFIKPIKLEFEKVYWPYLLINKKRYAG--LY 757

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
            F     Y+ ++ KG++ VRRD   L  +V + CL ++L ++  +  V    N   KV  D
Sbjct: 758  FTKPDKYDKMDCKGIETVRRDNCTLVVDVINSCLRKLLIDKDPDGAV----NYAKKVISD 813

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +    V + + VITK LTK    Y  A  Q HV+++ ++ +         GD +PY+I  
Sbjct: 814  LLQNNVDISQLVITKELTK--NDY--AAKQAHVELSKKMTKRDPGNAPKLGDRIPYVIIA 869

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
              GT +  +   A+     D +   +    ID  YY   Q+   + R+   I G S E +
Sbjct: 870  --GTKNSKAFEKAE-----DPIYVLENNIPIDSQYYLQNQLSKPLIRIFQPILGDSAESI 922


>gi|449301894|gb|EMC97903.1| hypothetical protein BAUCODRAFT_31911 [Baudoinia compniacensis UAMH
            10762]
          Length = 1107

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 163/656 (24%), Positives = 292/656 (44%), Gaps = 102/656 (15%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRV-PSSMWSKIGRLKRSEMPKLRKGRTIFGS-- 709
            ++D DV++G+NI  FD   LL RA   +V P   WS++  +K           T F S  
Sbjct: 386  EVDPDVIIGYNICNFDFPYLLDRAAHLKVAPFPFWSRLKNVKSVARD------TNFSSKQ 439

Query: 710  -GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
             G      +   GRL  D     +   +  SY+L  +    LN+ +++V    + +++  
Sbjct: 440  MGNRDTKATNTNGRLQLDLLQLVQRDYQLRSYTLNSVCAHFLNEQKEDVHHTMITELYNG 499

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL-- 825
            T ES   L  Y   DA+L   LM  L  L    ++  ++G  +   L  ++ Q++++L  
Sbjct: 500  TPESRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SKGQQIKFLSQ 557

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L      ++ ++P                           L +E ++             
Sbjct: 558  LYRKALEQQLVIPS--------------------------LKSEGSD------------- 578

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE------------- 932
                 Y G  V+EP +G YD  +  LDF SLYPSI+Q +N+C+TT+              
Sbjct: 579  ---EQYEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLLNKTAIEKLSLKKD 635

Query: 933  ----RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
                ++P+G +    +    G+L ++L+ L+  R+  K  +   +   +   L+ +Q AL
Sbjct: 636  EDYIQTPNGDL-FCTAKVRKGLLSQILEELLSARKRAKKELAVETDTFRKAVLNGRQLAL 694

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIY 1039
            K++ANS+YG  G +  +     +A   T  GR+++  T + V+    +        +VIY
Sbjct: 695  KVSANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKEEVEARYTIANGYTHDAQVIY 754

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
            GDTDS+M+  G  D+AKA  +       V+KK+ + ++++ + +Y   LL+ KK+YA   
Sbjct: 755  GDTDSVMVKFGPSDLAKAMELGQDAADYVSKKFIRPIKLEFEKVYYPYLLINKKRYAG-- 812

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
            + +     Y+ ++ KG++ VRRD   L + V +  L  +L +R  +   + + N++    
Sbjct: 813  LYWTKPEKYDKMDTKGIETVRRDNCRLVQTVIETSLRMLLMDRDVQGAQDYVKNTI---- 868

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
             ++  G++ +   VITK LTK       A  Q H ++A R+++    +  + GD V Y++
Sbjct: 869  SELLLGKIDMSNLVITKALTKSDY----ASKQAHTELAERMRKRDAGSAPALGDRVAYVM 924

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                  S G            D +   +    ID+ YY   Q+   + R+   I G
Sbjct: 925  VKGASGSRGYE-------NSEDPMFVLEHNLPIDVRYYLDNQLSKPLGRIFEPILG 973


>gi|269986765|gb|EEZ93044.1| DNA polymerase B region [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 738

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 170/637 (26%), Positives = 283/637 (44%), Gaps = 96/637 (15%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            A S+ +     E+ LL +L   L   + +V+VG+N   FD+  +  RA++     ++   
Sbjct: 188  AESDNIIKAKDEKDLLLKLSEILSSNNFNVIVGYNSDSFDMPYIAERAKILGFRFTVSGF 247

Query: 689  IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKT 748
              ++K       RK        A   I++ I               LREV+  +T   K 
Sbjct: 248  ELKIKGE-----RKKVAEINGLAHIDILNFIRNIYSIYNLKTEVLTLREVAAEITGERKG 302

Query: 749  QLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
            + N D       D+ ++F  ++   EL EY   D+ +++ L+F+ +VLPL  +L  + G 
Sbjct: 303  EFNWD-------DINEVFSNVKLATELCEYCIQDSNITL-LVFN-TVLPLITELNKLVGQ 353

Query: 809  LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
             +    + A    VE L++     K  ++P+K             S+  + DR ++++  
Sbjct: 354  TFADVSRMATGIVVENLIMKHAVIKNELIPNK------------PSDFQINDR-IKKIN- 399

Query: 869  EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
                                    G  V +P  GLY+  I ++DF SLYPSII  +NIC 
Sbjct: 400  -----------------------VGAFVFQPTAGLYEN-IAVVDFRSLYPSIIVSHNICP 435

Query: 929  TTVERSPDGLVPHL-PSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQAL 987
            +T++ + D   P   P  +  G++P +L  ++  R   K  +K     K  QL+ +   L
Sbjct: 436  STIQLNGDQ--PSFTPKEERLGLIPSVLSEVITLRFEAKDRLKLEKDNK--QLNARVLVL 491

Query: 988  KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
            KL AN  YG LG+ NSR+Y    A   T  GR+ ++  +   + +   +V+Y DTDS  I
Sbjct: 492  KLIANGFYGYLGYYNSRWYCFECAGATTALGRKYVQDVISTAE-SYKFKVLYADTDSAFI 550

Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLK-------KKKYAAVKV 1099
              G     + K    + I  +N K  K +E++L G Y R + +        KKKYA   +
Sbjct: 551  QFG-----ERKQTVNEFINGINSKLPKPMELELQGFYARAIFVSSKGGIGAKKKYAMSDL 605

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               DG     I  KG   VRRDW++++K +    L++IL E   E  V ++ N    + E
Sbjct: 606  ---DGN----ITIKGFQSVRRDWAVIAKNLQKEVLNKILLENDKEGAVATVKN----IIE 654

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
             +++GQ  L++ VI   L K P +Y   +   H+     +++SG      +GDT+ YII 
Sbjct: 655  KIKTGQAGLDELVILTRLRKDPSSY--QQTNRHISA---VEKSGMK--FVSGDTIKYIIA 707

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
              +   S S   +       +++K        D DYY
Sbjct: 708  KGKNNESVSEKAVLYEIARKNKIK-------YDPDYY 737


>gi|189234183|ref|XP_967290.2| PREDICTED: similar to DNA polymerase delta catalytic subunit
            [Tribolium castaneum]
          Length = 1172

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 163/660 (24%), Positives = 292/660 (44%), Gaps = 104/660 (15%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK------RSEMPKLRKGRTIFG 708
            D D+  G+NI+ FD   L+ RA   ++    +  +GR+       +  + + + G+  F 
Sbjct: 333  DPDIFTGYNINNFDFPYLIERANHLKL--KRFDYLGRILDIRSSIKETVTQTKIGKRTFK 390

Query: 709  SGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
            S           GR+  D  +  +   +  SY+L  +++  L + +++V  + V+   Q 
Sbjct: 391  S-------INFEGRVAYDMLMVIKRDFKLRSYTLNSVSQEILGEQKEDVH-YSVITDLQN 442

Query: 769  --LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYL 825
               ++   L  Y   DA L + ++  +       ++  ++G      L +G + + V  L
Sbjct: 443  GDEQTRRRLAVYCLKDADLPVRILSTVRSFTNDVEMARVTGVPITSLLTKGEQVKVVAQL 502

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L HA RA  Y +P                                           H+  
Sbjct: 503  LKHA-RAAGYFMPT------------------------------------------HQGA 519

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS--------PDG 937
                 Y G  V+EP++G Y   I  LDF+SLYPSI+  +N+C+TT+ +          D 
Sbjct: 520  PSSEQYEGATVIEPRRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLIKPSIKEKLCLSDE 579

Query: 938  LVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKL 989
             V   P       SS   G+LP +L++L+  R+  K  +K A+   ++  LD +Q A K+
Sbjct: 580  QVTTTPANCMFVKSSVRPGLLPHILQHLLAARKKTKAELKEATDPVVRAVLDGRQLAYKI 639

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGD 1041
            +ANS+YG  G    +     ++  +T  GR ++  T   V+ +  +E        VIYGD
Sbjct: 640  SANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQEVEQHYRIENGYESDAMVIYGD 699

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M++  +  + ++  +  +    ++ K+ K ++++ + +Y   LL+ KK+YA   + 
Sbjct: 700  TDSVMVNFRVKSLERSMELGREAADLISAKFIKPIKLEFEKVYWPYLLINKKRYAG--LY 757

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
            F     Y+ ++ KG++ VRRD   L  +V + CL ++L ++  +  V    N   KV  D
Sbjct: 758  FTKPDKYDKMDCKGIETVRRDNCTLVVDVINSCLRKLLIDKDPDGAV----NYAKKVISD 813

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
            +    V + + VITK LTK    Y  A  Q HV+++ ++ +         GD +PY+I  
Sbjct: 814  LLQNNVDISQLVITKELTK--NDY--AAKQAHVELSKKMTKRDPGNAPKLGDRIPYVIIA 869

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
              GT +  +   A+     D +   +    ID  YY   Q+   + R+   I G S E +
Sbjct: 870  --GTKNSKAFEKAE-----DPIYVLENNIPIDSQYYLQNQLSKPLIRIFQPILGDSAESI 922


>gi|12275267|emb|CAC22338.1| DNA polymerase [Leishmania turanica]
 gi|12275278|emb|CAC22332.1| DNA polymerase [Leishmania gerbilli]
          Length = 287

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 161/314 (51%), Gaps = 63/314 (20%)

Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
           S WS IGRL    +P+ +   T           +CI GRL+ D++  SR+  + V+Y L 
Sbjct: 8   SSWSTIGRLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLL 62

Query: 744 QLA-KTQLNKDRK-----EVGPHDVL-KMFQTLESLMELIEYGETDAWLSMELMFHLSVL 796
            LA + QL    K     E G   V   M      + +++      A LS  ++ HL V+
Sbjct: 63  SLADQMQLQGITKGSNNFEPGTSVVTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVI 122

Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
            LT++LT I+GNLW +TL GAR++R+EYLLLH F   K+I PD+  YV++ K        
Sbjct: 123 RLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR--YVQDFKRG------ 174

Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRK-GKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
                                 H+D  + GKR   Y GG+VL+PK GLY  Y LLLDFNS
Sbjct: 175 ----------------------HDDEEEDGKRKAKYQGGMVLDPKCGLYSDYTLLLDFNS 212

Query: 916 LYPSIIQEYNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKN 957
           LYPS+IQE++ICFTTV+R          P+ L+    S    G         VLP+++K+
Sbjct: 213 LYPSLIQEFSICFTTVDRENRSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKS 270

Query: 958 LVQRRRMVKTWMKT 971
           LV  RR VK  MKT
Sbjct: 271 LVDSRREVKRLMKT 284


>gi|282163973|ref|YP_003356358.1| family B DNA polymerase [Methanocella paludicola SANAE]
 gi|282156287|dbj|BAI61375.1| family B DNA polymerase [Methanocella paludicola SANAE]
          Length = 799

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 169/665 (25%), Positives = 291/665 (43%), Gaps = 106/665 (15%)

Query: 635  CCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR 694
              + S+++L+   +  +   D D++VG+N  GFD   +  RA+  ++  S+         
Sbjct: 206  ATDESDKSLIKEFIQYVKDYDPDIIVGYNQDGFDWPYISERAKKHKIKLSV--------- 256

Query: 695  SEMPKLRKGRT-IFGSGASPGIMSCIAGRLLCDTF-LCSRDL-------LREVSYSLTQL 745
                  R G + +FG G        I GRL  D F +  RD+       L  V+  L  +
Sbjct: 257  -----CRDGTSPMFGRGGLQRKTKLI-GRLNIDLFQVAQRDVDGVKIKTLENVADFLGVM 310

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
             K +    R  +   D+ + +   E   ELI+Y + D  +S        +LPL  +   +
Sbjct: 311  KKDE----RVNLFAADIYQYWADEEKRGELIQYAKDD--VSSTYGLSEELLPLQFEFARM 364

Query: 806  SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
                     +  R ++VE  L +       ++P +                         
Sbjct: 365  VHEPADNVSKMGRGRQVESYLAYIAYEYGELIPSR------------------------- 399

Query: 866  LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
                               G     Y GG V  P KG++ K +  LDF+++YPSI+  YN
Sbjct: 400  -------------------GGEVETYLGGFVFPPVKGIH-KNVASLDFSAMYPSIMITYN 439

Query: 926  ICFTTVERS-------PDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLK 976
            I   TV +        P   V H    +  G    +L++LV  R  +K  +         
Sbjct: 440  ISPDTVCKDCNVECYPPAPEVGHCFRKEPEGFFTRILRSLVSHRSALKKKLALMDKKDRD 499

Query: 977  IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
             + LDI+Q+ +K+  N+ YG  G++ +++Y +  AE  +  GR  ++   D+ Q  + LE
Sbjct: 500  YKMLDIRQKTIKILTNAFYGYTGWAQAKWYRRECAEATSAWGRYFIKKANDIAQ-AMGLE 558

Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYA 1095
            V+YGDTDS+ +   + D  +   I    I++V ++   L++D+D +Y+ +   + KK+YA
Sbjct: 559  VLYGDTDSLFVT--LKDGGRLPDITSAFIKKVKEELP-LDMDVDNIYRSIFFTESKKRYA 615

Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
             +  +       E++ R GL++ R DW  L+KE+    +  IL E + E  V+ + +++ 
Sbjct: 616  GLTSKG------EIVVR-GLEVRRGDWCELAKELQSEVIRIILEEENPEKAVKFVKDTIS 668

Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
            +V+E    G V L+K VI KTLTK  E+Y  A  Q HV+ A R ++   S   S G  + 
Sbjct: 669  EVKE----GMVPLDKLVIHKTLTKGVESYESA--QAHVKAAERAREMDMS--ASVGSKIS 720

Query: 1216 YIIC-CEQGTSSGSSVGIAQRARHPD-ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE 1273
            Y+I     GT S  +  +   ++  D +L   D  + +D +YY  +Q+ P   R+     
Sbjct: 721  YVIVKGPGGTLSERAYPVDMFSKFKDGKLYAKDKTYELDAEYYVDKQLIPTALRILGYFG 780

Query: 1274 GTSPE 1278
             T  E
Sbjct: 781  HTEDE 785


>gi|363753924|ref|XP_003647178.1| hypothetical protein Ecym_5625 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890814|gb|AET40361.1| hypothetical protein Ecym_5625 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1092

 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 193/803 (24%), Positives = 347/803 (43%), Gaps = 145/803 (18%)

Query: 502  VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            + G SW+++   K++  P  Q+VS C++E+ ++  KD+    +        P+ + + ++
Sbjct: 259  IVGMSWITLPKGKYTLIPKHQKVSSCQFEVAINY-KDLIAHPAEGDWVHSAPLRILSFDI 317

Query: 560  KT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
            +      VF +      I  A+VV             +   KP + + FTV         
Sbjct: 318  ECAGRVGVFPEPDTDPVIQIANVVSI-----------AGHSKPFIRNVFTV-----RSCA 361

Query: 615  PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
            P+             GS +   E  E  +L      + ++D DV++G+N + FD   L++
Sbjct: 362  PI------------TGSQIFEHEREE-DMLKHWRDFVVQVDPDVIIGYNTTNFDFPYLIN 408

Query: 675  RAQVCRVPSSMWSKIGRLKRSEMPKLRK--GRTIFGS---GASPGIMSCIAGRLLCDTFL 729
            RA    V S  +   GRL     P +++    T+F S   G        I GRL  D   
Sbjct: 409  RAAALHVDS--FPYFGRL-----PNVKQVIKETVFSSKAYGTRESKTINIDGRLQLDLLQ 461

Query: 730  CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETDAWLSME 788
              R   +  SY+L  ++   L + +++V    +  ++    E+   L  Y   DA+L + 
Sbjct: 462  FVRREYQLRSYTLNSVSAHFLGEQKEDVHHTIISSLYNGDSETRRRLAVYCLKDAYLPLR 521

Query: 789  LMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
            L+  L  L    +++ ++G  +   + +G + + +  L    F+    ++P+        
Sbjct: 522  LLEKLMALVNYAEMSRVTGVPFSYLITRGQQIKVISQLFRKCFQID-IVIPNM------- 573

Query: 848  KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
                                         TS +D +       Y G  V+EP +G YD  
Sbjct: 574  ----------------------------HTSPSDEQ-------YQGATVIEPIRGYYDVP 598

Query: 908  ILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKTTGV 950
            I  LDFNSLYPSI+  +N+C+T      TV R           +P+G    +   +  G+
Sbjct: 599  IATLDFNSLYPSIMMAHNLCYTTLCNKSTVARLNLKENEDYIITPNGDY-FVTEKRRRGI 657

Query: 951  LPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
            LP +L  L+  R+  KT +K  +   +   L+ +Q ALK++ANS+YG  G +  +     
Sbjct: 658  LPTILHELISARKRAKTDLKNETDPFRKDVLNGRQLALKISANSVYGFTGATVGKLPCLA 717

Query: 1010 LAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIA 1061
            ++  +T  GR ++ +T   V+    ++        VIYGDTDS+M+  G  D+ +   + 
Sbjct: 718  ISSSVTSFGRTMIEATKRAVEEKYTVKNGFSHDAVVIYGDTDSVMVKFGKTDLQETMNLG 777

Query: 1062 GKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR 1120
             +    V+  +K  + ++ + +Y   LL+ KK+YA   + +     ++ +++KGL  VRR
Sbjct: 778  AEAAAYVSSLFKHPINLEFEKVYFPYLLINKKRYAG--LYWTRPEKHDKLDQKGLASVRR 835

Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
            D   L   V +  L  IL +R+    ++ + +++    +D+   +  + K +I+KTL   
Sbjct: 836  DSCPLVSLVMNKVLRMILIDRNVPGALDFVRSTI----DDVLQNRADISKLIISKTLA-- 889

Query: 1181 PEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
                P   N QPH  +A R+K+     G + GD V Y+I        G +  +  RA  P
Sbjct: 890  ----PSYTNSQPHAVLAERMKKRD-GVGPNVGDRVDYVIV-------GGNDKLYNRAEDP 937

Query: 1240 DELKKGDGKWMIDIDYYASQQIH 1262
              L   +    ID  YY + Q+ 
Sbjct: 938  --LYVLEQNIQIDSKYYLTTQLQ 958


>gi|452986964|gb|EME86720.1| hypothetical protein MYCFIDRAFT_202624 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1089

 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 166/654 (25%), Positives = 292/654 (44%), Gaps = 98/654 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            ++D DV++G+NI+ FD   LL RA   +V     ++   L R    K     T F S   
Sbjct: 368  EVDPDVIIGYNIANFDFPYLLDRAAHLKV-----ARFPFLSRLRNVKSVAKDTNFASKQM 422

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-T 768
            G      +   GRL  D     +   +  SY+L  ++   LN+ +++V    + +++  T
Sbjct: 423  GNRDAKATNTNGRLQLDLLQLIQRDYQLRSYTLNSVSAHFLNEQKEDVHHTMITELYNGT 482

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--L 826
             ES   L  Y   DA+L   LM  L  L    ++  ++G  +   L  A+ Q+++++  L
Sbjct: 483  PESRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--AKGQQIKFISQL 540

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
                  ++ +VP                                 N   D+S        
Sbjct: 541  FRKALEQQLVVP---------------------------------NLKTDSSDEQ----- 562

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSP 935
                Y G  V+EP +G YD  +  LDF SLYPSI+Q +N+C+TT           +++  
Sbjct: 563  ----YEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLLNKTAIEKLDLKKDE 618

Query: 936  DGLV-PHLPSSKTT----GVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKL 989
            D +V P+     TT    G+L ++L+ L+  R+R  K         K   L+ +Q ALK+
Sbjct: 619  DYIVTPNGDLFCTTKVRKGLLSQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKI 678

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGD 1041
            +ANS+YG  G +  +     +A   T  GR+++  T   V+    +        +VIYGD
Sbjct: 679  SANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKAEVEARYTIANGYSHDAQVIYGD 738

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M+  G +D+AKA  +       V+ K+ K ++++ + +Y   LL+ KK+YA   + 
Sbjct: 739  TDSVMVKFGPNDLAKAMELGEDAANYVSSKFIKPIKLEFEKVYYPYLLINKKRYAG--LY 796

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
            + +   Y+ ++ KG++ VRRD   L + V +  L  +L E+  +   + +  ++ ++ ++
Sbjct: 797  WTNTTKYDKMDTKGIETVRRDNCRLVQNVIETSLRMLLIEQDVQGAQDYVKETISELLQN 856

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
                ++ +   VITK L+K       A  Q H ++A R+++    +  + GD V Y++  
Sbjct: 857  ----RIDMSNLVITKALSKSDY----ASKQAHTELAERMRKRDAGSAPALGDRVAYVMVK 908

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                S G         +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 909  GAAGSKGYE-------KSEDPMFVLEHNLPIDTKYYLDNQLAKPLGRIFEPILG 955


>gi|320101467|ref|YP_004177059.1| replicative DNA polymerase I [Desulfurococcus mucosus DSM 2162]
 gi|319753819|gb|ADV65577.1| replicative DNA polymerase I [Desulfurococcus mucosus DSM 2162]
          Length = 799

 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 175/652 (26%), Positives = 285/652 (43%), Gaps = 124/652 (19%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D D++VG+N + FD   LL R+++  +                 KL  GR    SG  P 
Sbjct: 235  DPDIVVGYNSNHFDWPYLLERSKILGL-----------------KLDVGRR---SGGEPS 274

Query: 715  IMS----CIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE---VGPHDVLKMFQ 767
              +     I GRL  D    + ++      SL  +A       R E   V   D  K ++
Sbjct: 275  TSTYGHVSIPGRLNVDLLNYAEEIPEVKLKSLDVVADYLGVMKRSERVLVDYVDFPKYWR 334

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
              E    L+ Y   D   +M L      LP   QL NI+G    +    +   R+E+ L+
Sbjct: 335  DPEKRRVLLRYNLDDVESTMGLAGKF--LPFAMQLANITGLPLDQVGAASVGHRLEWFLM 392

Query: 828  HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
                 +  ++P+                                           R  K 
Sbjct: 393  KEATRRGELIPN-------------------------------------------RVEKE 409

Query: 888  GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-----------SPD 936
               Y G +VL+P  G+++  I +LDF S+YP+I+ +YNI   T+ R           +P+
Sbjct: 410  AEPYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIMIKYNIGPDTILRGGECSSEEHNVAPE 468

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQALKLTANSM 994
              V H    +  G    +L+ L+  RR ++  MK       + + LD +Q+A+K+ AN+ 
Sbjct: 469  --VGHCFLREPQGFFKGVLQALLALRRQLRAEMKKHPVDSPEYRLLDERQRAVKILANAA 526

Query: 995  YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDI 1054
            YG +G+  +R+Y +  AE +T  GR  + STV     ++ L+VIYGDTDS+ + +  +  
Sbjct: 527  YGYMGWVGARWYCRECAEAVTAWGRRTI-STVIEHAKSMGLKVIYGDTDSLFVENIPE-- 583

Query: 1055 AKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPYEVIERK 1113
             K K +A  V +E+       EI +D +Y+R+   + KK+YA +    +DG     ++  
Sbjct: 584  -KVKELADFVEKEMG-----FEIKVDKVYRRVFFTEAKKRYAGL---LEDGR----VDIV 630

Query: 1114 GLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVI 1173
            G + VR DW+ ++KEV +     +LSE++ E  ++ + +    +  ++  G++ LEK VI
Sbjct: 631  GFEAVRGDWAEIAKEVQEKVTEILLSEKNIEKAIDYVRS----IVSELNQGRIPLEKLVI 686

Query: 1174 TKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
             KTLTK  + Y      PHV  A +L++ G       GD V YI+    G        I+
Sbjct: 687  WKTLTKQVDEY--EAEAPHVNAAKKLRRMGIM--VEVGDKVGYIVVKGPGK-------IS 735

Query: 1234 QRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
            +RA  P    K D + ++D  YY   QI P   R+     G +  +L    G
Sbjct: 736  ERA-EPYMFVK-DPR-LVDASYYIDHQIIPAALRILGYF-GVTDTQLKKAAG 783


>gi|330793430|ref|XP_003284787.1| DNA polymerase delta catalytic subunit [Dictyostelium purpureum]
 gi|325085281|gb|EGC38691.1| DNA polymerase delta catalytic subunit [Dictyostelium purpureum]
          Length = 1026

 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 131/417 (31%), Positives = 208/417 (49%), Gaps = 60/417 (14%)

Query: 885  GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV------------- 931
            GK G  + G +V+EPK   YD  I  LDF SLYPSI+  +N+C++T+             
Sbjct: 503  GKAGEKFKGAVVIEPKCAFYDTPIATLDFTSLYPSIMMAHNLCYSTLLPAEEAKKLPADE 562

Query: 932  -ERSPDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQA 986
               +P G   ++PH    K  G+LP +L+ L+  R+  K  +K      K   LD +Q A
Sbjct: 563  YTVTPSGDHFILPH----KKKGLLPRILEELLSARKNAKELLKNEKDPFKKAVLDGRQLA 618

Query: 987  LKLTANSMYGCLGFSNSRFYAKPLAEL---ITQQGREILRSTVDLVQN--------NLNL 1035
            LK++ANS+Y   GF+ +R    P  E+   +T  GRE+L +T  +V+         N + 
Sbjct: 619  LKISANSVY---GFTGARVGKLPCVEISRSVTSFGREMLDTTKKIVEERYTIANGYNHDA 675

Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKY 1094
             VIYGDTDS+M+  G+  +A+A A+  +  +EV K + + + +D + +Y   LL+ KKKY
Sbjct: 676  VVIYGDTDSVMVKFGVPTVAEAMALGREASKEVTKHFIRPINLDFEKVYYPYLLMAKKKY 735

Query: 1095 AAV---KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
            A +   K    D M     + KGL+ VRRD  LL + V    L ++L E+  +   E   
Sbjct: 736  AGLFWTKPDIHDKM-----DVKGLETVRRDTCLLVRNVVSTILKKLLIEKDIKQAEEYTK 790

Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
            +    V  D+   ++ L   VITK L+K    Y       H ++A +++    +T  + G
Sbjct: 791  S----VISDLLQNRLDLSMLVITKALSK--SQY--KGRVIHNELAQKMRARNPATAPNLG 842

Query: 1212 DTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
            D VPY++   QG        I ++A  P  L   +   ++D  YY  +Q+   + R+
Sbjct: 843  DRVPYVVI--QGLKGAP---IYEKAEDP--LYVLEHNILLDTQYYLDKQLKAPLLRI 892



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
           +S  G++V+     E+ +L      L K+D D+++G+NI+ FDL  L+ RA+  ++P   
Sbjct: 287 SSIVGAHVIS-HKCEKDMLKEWRKFLIKVDPDIIIGYNIANFDLPYLISRARTLKIPE-- 343

Query: 686 WSKIGRLKRS 695
           ++ + R+K +
Sbjct: 344 FALLSRIKTT 353


>gi|452845568|gb|EME47501.1| hypothetical protein DOTSEDRAFT_50888 [Dothistroma septosporum NZE10]
          Length = 1104

 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 168/654 (25%), Positives = 294/654 (44%), Gaps = 98/654 (14%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
            ++D DV++G+NIS FD   LL RA   +V      +   L R    K     T F S   
Sbjct: 383  EVDPDVIIGYNISNFDFPYLLDRAAFLKV-----GRFPFLTRLRNVKSMAKDTNFSSKQM 437

Query: 710  GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-T 768
            G      +   GRL  D     +   +  SY+L  ++   L++ +++V    + +++  T
Sbjct: 438  GNRDTKATNTNGRLQLDLLQLIQRDYQLRSYTLNSVSAHFLSEQKEDVHHTMITELYNGT 497

Query: 769  LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--L 826
             ES   L  Y   DA+L   LM  L  L    ++  ++G  +   L  ++ Q+++++  L
Sbjct: 498  PESRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SKGQQIKFISQL 555

Query: 827  LHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGK 886
                  ++ +VPD                          L +E ++              
Sbjct: 556  FRKALEQQLVVPD--------------------------LKSEGSD-------------- 575

Query: 887  RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERSP 935
                Y G  V+EP +G YD  +  LDF SLYPSIIQ +N+C+TT           +++  
Sbjct: 576  --EQYEGATVIEPTRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNKNAVEKMQLKKDD 633

Query: 936  DGLV-PHLPSSKTT----GVLPELLKNLV-QRRRMVKTWMKTASGLKIQQLDIQQQALKL 989
            D +V P+     TT    G+L ++L+ L+  R+R  K         K   L+ +Q ALK+
Sbjct: 634  DYIVTPNGDLFATTKVRKGLLSQILEELLGARKRAKKELAVETDPFKKAVLNGRQLALKI 693

Query: 990  TANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGD 1041
            +ANS+YG  G +  +     +A   T  GR+++  T + V+    +        +VIYGD
Sbjct: 694  SANSVYGLTGATVGKLPCLAIASSTTAYGRQMIEKTKEEVEGKYTVANGYSHDAQVIYGD 753

Query: 1042 TDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQ 1100
            TDS+M+  G +D+AKA  +  +    V+ K+ K ++++ + +Y   LL+ KK+YA +   
Sbjct: 754  TDSVMVKFGPNDLAKAMELGQEAAGYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 813

Query: 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQED 1160
              D   Y+ ++ KG++ VRRD   L + V +  L  +L ++  +   + +  ++ ++ ++
Sbjct: 814  KPDN--YDKMDTKGIETVRRDNCRLVQNVIETSLKMLLIDQDVQGAQDYVKETISELLQN 871

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
                +V +   VITK LTK       A  Q H ++A R+++    +  + GD V Y++  
Sbjct: 872  ----RVDMSNLVITKALTKSDY----ANKQAHTELAERMRKRDAGSAPALGDRVAYVMVK 923

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
                S G         +  D +   +    ID  YY   Q+   + R+   I G
Sbjct: 924  GAAGSKGYE-------KSEDPMFVLEHNLPIDTKYYLDNQLAKPLGRIFEPILG 970


>gi|429216955|ref|YP_007174945.1| DNA polymerase pol2 [Caldisphaera lagunensis DSM 15908]
 gi|429133484|gb|AFZ70496.1| DNA polymerase pol2 [Caldisphaera lagunensis DSM 15908]
          Length = 799

 Score =  163 bits (412), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 173/675 (25%), Positives = 304/675 (45%), Gaps = 139/675 (20%)

Query: 643  LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK 702
            LL+  +  + K D D++VG+N + FD   ++ R++V ++                 KL  
Sbjct: 229  LLHDFIELIRKEDPDIIVGYNQNRFDWPYIIERSKVYKI-----------------KLDI 271

Query: 703  GRTIFGSGASPGIMS--CIAGRLLCDTFLCSRDLLREVSY-SLTQLAKTQ--LNKDRK-E 756
            GR    S  +P +     I GRL  D +  + +L +E+ + SL ++A     + KD++  
Sbjct: 272  GRKA-DSAPNPSVFGHYSIHGRLNVDLYDFAEEL-QEIKFKSLDEVADYLGVMPKDKRVN 329

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            +    + + +  ++    L +Y   D   ++ L +    LP   QL+ ISG    + +  
Sbjct: 330  IDWWLIAQYWDNMDKRSTLKQYAIDDVESTLGLAYKF--LPFGAQLSIISGLPMDQVVAA 387

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            + A R+E  L+   + K  ++P++                   +RN+E            
Sbjct: 388  SVAFRLEARLMREAKKKNELMPNRI------------------ERNIE------------ 417

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
                          Y G +VL+P+ G+++  + +LDF S+YPSI+ +YNI        PD
Sbjct: 418  -------------TYIGAVVLKPEPGIHEN-VAVLDFASMYPSIMVKYNI-------GPD 456

Query: 937  GLVPHLPSSKTTGVLPELLKNLVQRR---------RMVKTWMKTASGLKIQQ-------- 979
             L+    + K     PE+       R         R +K   +T   +K+ +        
Sbjct: 457  TLLKDGENCKIRNRAPEVNHEFCFDRPAFMKMVLERFLKWRSETKKAMKLYKEGSPEYNL 516

Query: 980  LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039
            L+ +Q+A+K+ AN+ YG LG+  +R+Y +  AE IT  GR+++ +T++  + ++ L+V Y
Sbjct: 517  LNERQKAIKVLANASYGYLGWGAARWYCRDCAEAITAWGRDLISNTINFAK-SIGLKVYY 575

Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVK 1098
            GDTDS+ + +  D I        K+I  +  + +  +I +D +YKR+   + KK+YA + 
Sbjct: 576  GDTDSVFVDNDEDKI-------NKLINWITNELE-FDIKVDKVYKRIFFTEAKKRYAGLL 627

Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
               K       I+  G + VR DWS L+KEV       IL     +  +E I +    + 
Sbjct: 628  DNGK-------IDIVGFEAVRGDWSDLAKEVQSNIAELILKTGDPKKAIEYIKS----II 676

Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
            E ++ G++ L+K +I KTLTK    Y      PH   A  +++ GY    + G  V ++I
Sbjct: 677  ESLKKGEIPLDKLIIWKTLTKEINEY--EAETPHAYAAKLMEKMGYK--ITPGSKVGFVI 732

Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE----- 1273
                G+       I+++AR    +K+ D    ID +YY  +QI P   R+ +        
Sbjct: 733  IKGPGS-------ISKKARPYFMIKESD----IDTNYYIDKQIIPSALRILSYFGITEKD 781

Query: 1274 ---GTSPERLADCLG 1285
               GT    L D LG
Sbjct: 782  LKVGTKQPSLFDFLG 796


>gi|424813627|ref|ZP_18238815.1| DNA polymerase elongation subunit, family B [Candidatus Nanosalina
            sp. J07AB43]
 gi|339758573|gb|EGQ43828.1| DNA polymerase elongation subunit, family B [Candidatus Nanosalina
            sp. J07AB43]
          Length = 410

 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 199/409 (48%), Gaps = 48/409 (11%)

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI-------- 926
            N  + N  R+ +   AY GG V  P+ GLYD  I + DF SLYP+++  +NI        
Sbjct: 13   NRPTRNTQRRRQNQGAYEGGFVYTPESGLYDD-ISVFDFRSLYPTVMVAHNISPETLNLE 71

Query: 927  -CFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQ 983
             C  T +  P+G           G  PEL++ LV+ R  +K  MK      ++ +++  +
Sbjct: 72   NCSETFQ--PEGFDFSF-CQDNQGFFPELIQGLVESRYEIKGEMKKLDKDSIEYERIYSR 128

Query: 984  QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
            QQA K+ ANS YG LG++ +R+Y+K  A+  T  GR+ +  T++  +  +  E++YGDTD
Sbjct: 129  QQAQKVLANSFYGYLGYNGARWYSKECAQATTFMGRKYIEDTIETAR-EMGFEIVYGDTD 187

Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
            S+ +    DDI + K    + +++VN    + +E++ +G +K      K      K ++ 
Sbjct: 188  SVFLSG--DDIEERK---NEFLEKVNSDLPEFMELEFEGFFKTGFFTSKDSGEGAKKKYA 242

Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER--SCEDVVESIHNSLMKVQED 1160
                 E ++  G + VRRDWS ++K+     L ++L+++     ++V++  NSL      
Sbjct: 243  LMDEEEDMKITGFEQVRRDWSSVAKDTQRKVLQKVLNKKVDQAAEIVKNTINSL------ 296

Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
             ++ +V +EK  I  TLTKPPE Y      PHV+ A +  + G         T+ Y+I  
Sbjct: 297  -KNQEVDVEKLRIFTTLTKPPEDYESTA--PHVEAAKKAIERG--EDIEPETTIGYVIT- 350

Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                 SG+    A+ A   D           D DYY   Q+ P   R+ 
Sbjct: 351  ---RGSGNISARAETAEFADSY---------DPDYYIDNQVIPAAVRVL 387


>gi|146304901|ref|YP_001192217.1| DNA polymerase II [Metallosphaera sedula DSM 5348]
 gi|145703151|gb|ABP96293.1| replicative DNA polymerase I [Metallosphaera sedula DSM 5348]
          Length = 783

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 170/642 (26%), Positives = 280/642 (43%), Gaps = 140/642 (21%)

Query: 655  DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG 714
            D DV++G+N +GFD   +L RA V                    KL  GR +  S  S G
Sbjct: 231  DPDVILGYNSNGFDWQYMLERASV-----------------RGTKLDIGRKV-NSEPSQG 272

Query: 715  IMS--CIAGRLLCDTFLCSRDL-------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
                  + GRL  D +  +  L       L  V+  L  L K +    R  +  + + + 
Sbjct: 273  TYGHYSVVGRLNVDLYGFAESLEGVKVKSLDNVADYLGILPKNK----RTNLEWYQIPEY 328

Query: 766  FQTLESLMELIEYGETDA---WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
            ++  +    +++Y   D    +L  ++ F+        QLT ISG    +    +   RV
Sbjct: 329  WEDPKRREVVLKYNLDDVKTTYLLRDVFFNFG-----EQLTVISGLPLDQLCMASVGHRV 383

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            E+LL+   +    ++P                                           +
Sbjct: 384  EWLLMRQAKQFNELIP-------------------------------------------N 400

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLV--- 939
            R  +R   Y GGLV+EPK GL++  + +LDF+S+YPSI+ +YNI        PD LV   
Sbjct: 401  RVERRYEGYKGGLVIEPKPGLHEN-VAVLDFSSMYPSIMIKYNI-------GPDTLVQGE 452

Query: 940  -------PHLP---SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
                   P +         G    +L  L++ RR  K  M  A    + ++LD +Q+ALK
Sbjct: 453  CNDCWVAPEVGYKFRKDVDGFYRSILNFLLEERRKTKDQMSQAKDEYEKRRLDERQRALK 512

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
            + AN+MYG +G+  +R+Y+K  AE +T  GR+ + +  ++ +N+   EVIYGDTDSI + 
Sbjct: 513  IMANAMYGYMGWLGARWYSKEGAEAVTAWGRQTIMTAAEIAKNS-GFEVIYGDTDSIFVK 571

Query: 1049 SGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDGMPY 1107
                D++  + +  K++Q ++     L+I +D  YK++   + KK+YA +    K     
Sbjct: 572  G---DMSSVELLTQKIVQALD-----LDIKVDKKYKKVFFTENKKRYAGLTFDGK----- 618

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
              I+  G + +R DW  L+K+     + +IL  +  +D V++    +MKV    +  +  
Sbjct: 619  --IDIVGFEAIRGDWCELAKDTQRMVIERILL-KGVDDAVKAAKEVIMKV----KRREFE 671

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            L   VI K+L K  + Y    + PHV  A +   +GY+   +    + Y++    G  S 
Sbjct: 672  LHDIVIWKSLDKSLDEY--EVDAPHVIAAKKAINAGYAIMRNG--KIGYVVVKGAGRVSD 727

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                       P  + K   K  IDIDYY  +QI P V R+ 
Sbjct: 728  RV--------EPYFMVKDKTK--IDIDYYVEKQIIPAVMRIL 759


>gi|401407254|ref|XP_003883076.1| DNA polymerase, related [Neospora caninum Liverpool]
 gi|325117492|emb|CBZ53044.1| DNA polymerase, related [Neospora caninum Liverpool]
          Length = 1219

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 192/685 (28%), Positives = 307/685 (44%), Gaps = 100/685 (14%)

Query: 629  AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
            AGS VL  +  E+ +L +    + ++D D L G+N   FDL+ L+ RA   +V    +++
Sbjct: 481  AGSVVLWFDD-EKEMLAKWAEFVRQVDPDFLSGYNCVNFDLNYLITRATTLKVDG--FNR 537

Query: 689  IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
            + +LK  E  K+R   + F S   G   G      GR+  D     R   +  SYSL  +
Sbjct: 538  LSKLKSLES-KIRD--SSFSSRALGTHEGKEIPTEGRIQFDILELVRRDYKLKSYSLNFV 594

Query: 746  AKTQLNKDRKEVGPHDVLKMFQTLESLMELIE-YGETDAWLSMELMFHLSVLPLTRQLTN 804
            +   L + +++V    +  +F+   S    I  Y   DA+L + L+  L  L    +++ 
Sbjct: 595  SFEFLKEQKEDVHYSMIGDLFRGCPSSRRRIGVYCLKDAYLPLRLLKELLFLYNYVEMSR 654

Query: 805  ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
            ++G      L   +  +V   LL   +   Y+VP     VK T                 
Sbjct: 655  VTGTPLNFLLTRGQQIKVTAQLLRKCKELNYLVP----VVKRTG---------------- 694

Query: 865  ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
                                G     Y G  VLEPKKG YDK I  LDF SLYPSI+  +
Sbjct: 695  --------------------GDNSVQYEGATVLEPKKGFYDKPIATLDFASLYPSIMIAH 734

Query: 925  NICFTTVERS--------PD------GLVPH--LPSSKTTGVLPELLKNLVQRRRMVKTW 968
            NIC++T+  +        PD       L PH  + +    GVLP +++ L+  R+  +  
Sbjct: 735  NICYSTLVAASEAHKMTNPDDVTVTTTLPPHKFVKAHVRRGVLPMIVEELIAARKAARKE 794

Query: 969  MKTASG-LKIQQLDIQQQALKLTANSM-YGCLGFSNSRFYAKPLAELITQQGREILRSTV 1026
            M  A   +  Q L+ +Q ALK++ANS+       +  +     +A  IT  GR+++  T 
Sbjct: 795  MAAAKDEMTKQVLNGRQLALKISANSVYGYTGTTTGGQLPCLEVATTITCFGRDMIDFTR 854

Query: 1027 DLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEI 1077
              V+           N  VIYGDTDS+M+  G   IA+A  +  +  Q ++ K+ K + +
Sbjct: 855  REVEKMFCKDKTRACNATVIYGDTDSVMVDFGDFSIAEAMKLGEEAAQALSAKFTKPIRL 914

Query: 1078 DLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQI 1137
            + + +Y   LL+ KK+YA   + +     Y+ I+ KG++ VRRD+SLL + + D  L ++
Sbjct: 915  EFEKVYCPFLLMNKKRYAG--LLYTRPEKYDKIDSKGIETVRRDFSLLVQTMADTVLRKM 972

Query: 1138 LSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL 1197
            L ++  E   E     + ++ ++    ++ L   V TK+L K           PHV++A 
Sbjct: 973  LIDKDVEAAKEYTRTKVAELLQN----KIDLSLLVQTKSLGK----MDYDTRLPHVELAK 1024

Query: 1198 RLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYA 1257
            +L++    T  S GD V Y++   QG     S G AQ  R  D L   +    ID  +Y 
Sbjct: 1025 KLRKRDAGTAPSVGDRVSYVVI--QG-----SKGQAQYERAEDPLYVLEHNLPIDTQHYL 1077

Query: 1258 SQQIHPVVSRLCASIEG--TSPERL 1280
                 P    LC   EG  ++PE L
Sbjct: 1078 EGIKKP----LCRIFEGVMSNPESL 1098


>gi|389860533|ref|YP_006362772.1| DNA polymerase family B [Thermogladius cellulolyticus 1633]
 gi|388525436|gb|AFK50634.1| DNA polymerase family B [Thermogladius cellulolyticus 1633]
          Length = 800

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 165/666 (24%), Positives = 292/666 (43%), Gaps = 112/666 (16%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            ++ ++   +  + + D D++VG+N   FD   LL RA+   V   +  ++G         
Sbjct: 220  DKKVIQEFVKYVQEYDPDIIVGYNSDAFDWPYLLERAKRVGVKLEVTRRLG--------- 270

Query: 700  LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK---TQLNKDRKE 756
            +    + +G          I GRL  D +  + ++      SL  +A+        +R  
Sbjct: 271  VEPQTSTYGH-------VSIQGRLNVDLYRFAEEIPEIKVKSLDVVAEYLGVMKRSERTL 323

Query: 757  VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
            V   D  K +        L++Y + D   +M L      LP   QL+ ++     +    
Sbjct: 324  VEYTDFPKYWDDPSKRGVLVKYNQDDVRSTMGLAEKF--LPFAMQLSYVTRLPLDQVGAA 381

Query: 817  ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
            +   R+E+ L++       ++P+                                     
Sbjct: 382  SVGNRLEWFLMYEAMKAGELIPN------------------------------------- 404

Query: 877  TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
                  R+ K    Y G +VL+P +G++D  + +LDF+S+YP+++ +YN+   T+ER+ +
Sbjct: 405  ------REEKEAEPYKGAVVLQPVRGIHDN-VAVLDFSSMYPNLMIKYNVGPDTIERAGE 457

Query: 937  ------GLVP---HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDIQQQ 985
                   + P   H    +  G   ++L  L++ R+ +++ MK      ++ + LD +Q+
Sbjct: 458  CDVGTHNIAPEVGHCFRREPPGFFKDVLTKLLELRKSIRSEMKKYKPDTVEYRILDERQR 517

Query: 986  ALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSI 1045
            A+K+ AN+ YG +G+  +R+Y +  AE +T  GR  + + +   +  L L+VIYGDTDSI
Sbjct: 518  AIKILANATYGYMGWVGARWYCRECAEAVTAWGRATITNVIKYAE-GLGLKVIYGDTDSI 576

Query: 1046 MIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQFKDG 1104
             +     D  K   +   V +E+      LEI +D LY R+   + KK+YA +    +DG
Sbjct: 577  FVKY---DKEKVDKLIKYVEEELG-----LEIKIDKLYTRVFFTEAKKRYAGL---LEDG 625

Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
                 ++  G + VR DW+ ++KEV +     +L +      +E + + + +V    +SG
Sbjct: 626  R----VDIVGFEAVRGDWAEIAKEVQEEITEILLKDGDLNKAIEYVRSVVSQV----KSG 677

Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
             V +EK VI KTLTK PE Y  +   PHV  A +L + G     +  D + Y++    G 
Sbjct: 678  SVPVEKLVIWKTLTKRPEEY--SAEAPHVSAARKLMKRGVRVDIN--DKIGYVVVKGAGK 733

Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL 1284
                   I+ RA     +K  D K  +D  YY   QI P   R+     G S  +L    
Sbjct: 734  -------ISDRAEPYIFVK--DPK-SVDDAYYVDHQIIPAAMRILEYF-GVSEAQLKKTS 782

Query: 1285 GLDPSK 1290
               PS+
Sbjct: 783  QQAPSQ 788


>gi|307595059|ref|YP_003901376.1| DNA polymerase Pol2 [Vulcanisaeta distributa DSM 14429]
 gi|307550260|gb|ADN50325.1| DNA polymerase Pol2 [Vulcanisaeta distributa DSM 14429]
          Length = 784

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 171/648 (26%), Positives = 291/648 (44%), Gaps = 146/648 (22%)

Query: 653  KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG-RLKRSEMPKLRKGRTIFGSGA 711
            K D D++VG+N +GFD   L++R+          S++G RL  S M          G+  
Sbjct: 228  KYDPDIVVGYNNNGFDWPYLVNRS----------SRVGVRLALSRM----------GNPP 267

Query: 712  SPGIMS--CIAGRLLCDTFLCSRDLLREVS----YSLTQLAK---TQLNKDRKEVGPHDV 762
             P +     I GR   D +    + + E+S     SL + A+        +R  +  H +
Sbjct: 268  EPSVYGHWSIIGRANVDLY----NFIEEISEIKVKSLDRAAEFFGIMKRSERVLIPGHRI 323

Query: 763  LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
             + +        L++Y   D   +  L   L  LP   QL++ISG    +    +   RV
Sbjct: 324  HEYWDDKNKRDLLLKYARDDVVSTYGLAEKL--LPFAIQLSSISGLPLDQVGAASVGARV 381

Query: 823  EYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDH 882
            E+++              +  VK  ++A  R     E+R  E                  
Sbjct: 382  EWMIF-------------YEAVKRGELAPNR-----EERPYE------------------ 405

Query: 883  RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI------------CFTT 930
                    Y G +VLEP+ GL++  I ++DF+S+YPSI+ +YN+            C+  
Sbjct: 406  -------TYKGAVVLEPRPGLHEN-IAVIDFSSMYPSIMMKYNVSPDTLVLGDCGDCYVA 457

Query: 931  VE------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLDI 982
             E      RSP+GL P L            L+ LV+ RR V+  MK    +  +   L+ 
Sbjct: 458  PEVNYKFRRSPEGLYPGL------------LRILVESRRRVRDLMKKYPENSPEWVLLNE 505

Query: 983  QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
            +Q+ALK+ AN+MYG  G+  +R+Y + +AE +T  GR +LR+ ++  + +L L +IYGDT
Sbjct: 506  RQRALKVMANAMYGYCGWLGARWYRREVAEAVTAWGRNLLRTVIEKAR-SLGLPIIYGDT 564

Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLK-KKKYAAVKVQF 1101
            DS+ + +  D   K  A+   V  E+       E+ +D +Y+R+L  + KK+Y  + V+ 
Sbjct: 565  DSLFVRNISD---KVDALINYVNNELG-----FEVKVDKVYRRVLFTEAKKRYVGLTVEG 616

Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
            +       ++  G + VR DW+ ++K+V +     +L+       +  + + + KV    
Sbjct: 617  E-------VDIVGFEAVRGDWAEIAKDVQENVAEIVLTTGDVGKAISYVKSVIDKV---- 665

Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
            ++ Q  ++  +I KTL K    Y      PHV  A +L ++GY  G   GD + Y++   
Sbjct: 666  KAYQFDIDDVIIWKTLDKSLNEYKVL--TPHVAAAKQLVEAGYKVG--KGDMIGYVVV-- 719

Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
                 G    +A + + P  L K   +  +D+DYY  +QI P   R+ 
Sbjct: 720  ----KGGGAKLAYKVK-PYILIKDIRE--VDVDYYVEKQIVPAAMRIL 760


>gi|448936384|gb|AGE59932.1| DNA polymerase [Acanthocystis turfacea Chlorella virus TN603.4.2]
          Length = 902

 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 203/834 (24%), Positives = 346/834 (41%), Gaps = 164/834 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYE----ITVDSPKDIRVSSSSKHVAEVPPVTVT 555
            RK+    W+ +S+  S PA  RVS C  E     T   P D         V   PP+ + 
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDIEAECNFTQVGPSD---------VVTTPPLVIA 178

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            + +++T   +R+                      +A+ +++ G    F  V      +F 
Sbjct: 179  SWDIETYSRERK---------FPLASNPDDYVTQIATSFQRYGESEPFKRV------VFC 223

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
            +       D     G +++ C S E  ++N  M E+ K  +DVL+G+N+  +D   +  R
Sbjct: 224  L------NDTADVPGVDIVSC-SQEADVINAWMDEITKEKTDVLIGYNVFQYDWKYIYGR 276

Query: 676  AQVCRVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
            AQ+    ++    +            G++   E+     G+  F    +PG++       
Sbjct: 277  AQMLVDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD---- 332

Query: 724  LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGETD 782
            L   F  +R+L    SYSL  ++K  L   + ++    + + F+   E    + +Y   D
Sbjct: 333  LLQWFRKNRNL---ESYSLNNVSKLYLGDQKDDLPAMQIFEKFEGNAEDRAVIAKYAAQD 389

Query: 783  AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDK 840
              L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD 
Sbjct: 390  TLLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDN 447

Query: 841  FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
              +  E K                                          + G  VLEPK
Sbjct: 448  KAWPAEGK------------------------------------------FEGATVLEPK 465

Query: 901  KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSK 946
            KG Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K
Sbjct: 466  KGAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQK 525

Query: 947  TTGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
            + GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S 
Sbjct: 526  SQGVVPALLDDLAKFRKNAKKMMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGFLGASK 585

Query: 1003 SRFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI------- 1051
                  P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +       
Sbjct: 586  GFIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPKGKDQN 642

Query: 1052 ---DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPY 1107
               D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D    
Sbjct: 643  NINDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEK 696

Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
              ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  
Sbjct: 697  GKVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYP 752

Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
            +EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++         
Sbjct: 753  MEKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----ED 801

Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVSRLCASIEGTSPER 1279
               + + Q  R  D     +   ++D  +Y   Q + P+VS     +E   PE+
Sbjct: 802  DDKIDLKQSMRAEDPTFAKNNGLVVDRLFYIDHQLLKPLVSLFDPLVE--DPEK 853


>gi|315231385|ref|YP_004071821.1| DNA polymerase I [Thermococcus barophilus MP]
 gi|315184413|gb|ADT84598.1| archaeal DNA polymerase I [Thermococcus barophilus MP]
          Length = 1138

 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 182/373 (48%), Gaps = 36/373 (9%)

Query: 910  LLDFNSLYPSIIQEYNICFTTVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQR 961
            +L  NSLYPSII  +N+   T+ER        +P  +V +       G +  +L+ L++ 
Sbjct: 767  ILTHNSLYPSIIITHNVSPDTLEREGCKNYDVAP--IVGYKFCKDFKGFISSILEELIET 824

Query: 962  RRMVKTWMK-TASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE 1020
            R  +K  MK T   +K + LD +Q+A+KL ANS YG +G+  +R+Y+K  AE +T  GR 
Sbjct: 825  RTKIKKEMKATIDPIKRKMLDYRQKAVKLLANSHYGYMGYPKARWYSKECAESVTAWGRT 884

Query: 1021 ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDL 1079
             +  T+  ++     +V+Y DTD +       D    K  A + ++ +N K    LE++ 
Sbjct: 885  YIEMTIKEIEEKFGFKVLYADTDGLYATIPDADAETIKKKAKEFLKYINSKLPGLLELEY 944

Query: 1080 DGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            +G Y R   + KK+YA +  + K       I  +GL++VRRDWS ++KE     L  IL 
Sbjct: 945  EGFYLRGFFVTKKRYAVIDEEGK-------ITTRGLEVVRRDWSEIAKETQAKVLEAILK 997

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
            + S E  VE +     KV ED+   +V LEK VI + +TK  + Y      PHV VA RL
Sbjct: 998  DGSVEKAVEIVK----KVVEDLAKYKVPLEKLVIHEQITKSLDEY--KATGPHVAVARRL 1051

Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
            K  G       G  + YII   +G    S   I      P + K        D DYY   
Sbjct: 1052 KAKG--IKVRPGMIISYIIL--KGDKKISDRAILLSEYDPKKHK-------YDPDYYIEH 1100

Query: 1260 QIHPVVSRLCASI 1272
            Q+ P V R+  + 
Sbjct: 1101 QVLPAVLRILEAF 1113



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 52/276 (18%)

Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
           SSER ++ R +  + + D DVL+ +N   FDL  L+ RAQ       +   I R K +  
Sbjct: 185 SSEREMIKRFVQIIREKDPDVLITYNGDNFDLPYLIKRAQKL----GLRLFISRDKENPE 240

Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
           PK+++    F           I GR+  D F   R  +   +Y+L  + +  L K + ++
Sbjct: 241 PKIQRMGDRFAVE--------IKGRIHFDLFPVVRRTINLPTYTLEAVYEAVLGKKKTKL 292

Query: 758 GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
              ++  ++++ E + EL +Y   DA  + EL       P+  +L  + G       + +
Sbjct: 293 EAAEITAIWESEEGMKELAKYSMEDAKATYEL--GREFFPMEAELARLIGQSVWDVSRSS 350

Query: 818 RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
               VE+ LL                    ++A QR              NE A   N  
Sbjct: 351 TGNLVEWFLL--------------------RIAYQR--------------NELA--PNKP 374

Query: 878 SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
           S  ++++  R   Y GG V EP++GL++  I+ LDF
Sbjct: 375 SDEEYQRRLR-TTYLGGYVKEPERGLWEN-IVYLDF 408


>gi|313225943|emb|CBY21086.1| unnamed protein product [Oikopleura dioica]
          Length = 1062

 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 218/919 (23%), Positives = 378/919 (41%), Gaps = 149/919 (16%)

Query: 344  EQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYA-IPNGPLFQTDEIMKLEKDAE 402
            E + G    T+ ++G  K GS   S C+ VK  Q   Y   PNG  F  D   +  ++  
Sbjct: 69   EFVDGEPKPTIRIYGTDKKGS---SVCLFVKGFQPYFYTPAPNG--FSEDYCGQFVRELN 123

Query: 403  ESRISPM--AFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
            E  +  M     K +    L  +      +   N S   +  +K   A  Q   P     
Sbjct: 124  ERVLGAMRGGMLKGISKAVLHAEMCSKENIYGYN-SKGKIPFIKVTVASWQVMTPCKN-- 180

Query: 461  VLKINYPFKDPPLPADLKGENFCSLLGTHSSALEL---FLVKRKVKGPSWLSISKFSSCP 517
                     +P          F      + S ++    F+V  KV+G SW+++ K     
Sbjct: 181  -------VMEPGWKVTTDNGQFHHNFSMYESHIDYEVRFMVDCKVRGASWITVPKGQFHE 233

Query: 518  APQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL-----KTVFNKRQDVNEI 572
              ++ + C  E  VD   DI         A++ P+ + + ++     K VF + +     
Sbjct: 234  RMRKETTCSIEAEVDY-ADIIPHEPEGEWADIAPMRIFSYDIECAGRKGVFPEAE----- 287

Query: 573  VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSN 632
                    H   I    +      P               IF +         +   G++
Sbjct: 288  --------HDPVIQIACMVQNQGDPSPFVRM---------IFTL------NSCSPIVGNH 324

Query: 633  VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL 692
            V C E  E  +L      +  +D D++ G+NI  FD   L++RA   +  S  +  +GR+
Sbjct: 325  VFCYEK-EIDMLEGFAELMRLVDPDIITGYNIMNFDTSYLVNRANTLK--SQNFGYLGRI 381

Query: 693  KRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
             RS + K++  +  F S   G        I GR+  D  +      +  SY+L  ++   
Sbjct: 382  -RSNLSKVKDAK--FSSKQMGTREYKEVNIDGRIQLDVMVSIVQNYKLRSYNLNAVSYHF 438

Query: 750  LNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
            L K++KE   H ++   Q  T      L  Y   DA L + LM  L  +  T ++  ++G
Sbjct: 439  L-KEQKEDVHHSIISDLQAGTDSDRRRLAVYCLKDALLPLRLMDKLMFVVNTMEMARVTG 497

Query: 808  NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
                  L   ++ +V   LL     +  ++P     V +T+ + Q               
Sbjct: 498  IPLSYLLTRGQSVKVMAQLLRESSIRDLVMP-----VLKTEQSDQ--------------- 537

Query: 868  NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
                                   Y G  V++P +G Y + I  LDF SLYPSI++ +N+C
Sbjct: 538  -----------------------YEGATVIDPIRGYYKEPITTLDFASLYPSIMRAHNLC 574

Query: 928  FTTV-----ERSPDGLVPHLPSSKTTG---VLPELLKN--LVQRRRMVKTWMKTASGLKI 977
            +TT+     ERS       + +   TG   V PE+ +    +  + +++   K    LKI
Sbjct: 575  YTTLLSNKNERSKLDTSQFIKTP--TGDEFVKPEVREGLLPLILKNLLEARGKAKKELKI 632

Query: 978  QQ-------LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
            +Q       LD +Q ALK++ANS+YG  G    +    P++  +T  GR ++  T+  V+
Sbjct: 633  EQCPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLPISGSVTAFGRLMIEQTMKTVE 692

Query: 1031 NNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDG 1081
             +         + +V+YGDTDS+MI  G   IAK+  +  +  + V  ++   ++++ + 
Sbjct: 693  EHYTRANGFEHDAKVVYGDTDSVMIKFGTSSIAKSFELGAEAAKFVTSQFINPIKLEFEK 752

Query: 1082 LYKRMLLLKKKKYAAVKVQFKDGMP--YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
            +Y   LL+ KK+YA +   +    P  ++ ++ KG++ VRRD   L+ E+   CL  +L 
Sbjct: 753  VYCPYLLINKKRYAGL---YYSSNPDKHDKMDCKGIETVRRDNCRLASELISKCLDMMLI 809

Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
             R  +  ++   +++     D+   +V + K VITK LT+  E Y  A  Q H ++A R+
Sbjct: 810  NRDPDGAIDYAKDTI----RDLLLNRVDISKLVITKELTQKAENY--ANKQAHCELAERM 863

Query: 1200 KQSGYSTGCSAGDTVPYII 1218
            ++    +    GD VPY+ 
Sbjct: 864  RKRDPGSAPQLGDRVPYVF 882


>gi|448932568|gb|AGE56127.1| DNA polymerase [Acanthocystis turfacea Chlorella virus MO0605SPH]
 gi|448933574|gb|AGE57130.1| DNA polymerase [Acanthocystis turfacea Chlorella virus NE-JV-3]
 gi|448936701|gb|AGE60248.1| DNA polymerase [Acanthocystis turfacea Chlorella virus WI0606]
          Length = 902

 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 206/833 (24%), Positives = 350/833 (42%), Gaps = 162/833 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+    W+ +S+  S PA  RVS C  E+  +     +V  S   V   PP+ + + ++
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDIEVECNF---TQVGPSD--VVSTPPLVIASWDI 182

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T   +R+                      +A+ +++ G    F  V      +F +   
Sbjct: 183  ETYSRERK---------FPLASNPDDYVTQIATSFQRYGEAEPFKRV------VFCL--- 224

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                D     G  ++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  RAQ+ 
Sbjct: 225  ---NDTAGVPGVEIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYVYGRAQML 280

Query: 680  RVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               ++    +            G++   E+     G+  F    +PG++       L   
Sbjct: 281  VDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD----LLQW 336

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYGETDA 783
            F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E   E    + +Y   D 
Sbjct: 337  FRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDAEDRAVIAKYAAQDT 390

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
             L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD  
Sbjct: 391  LLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDNK 448

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
             +  E K                                          + G  VLEPKK
Sbjct: 449  AWPAEGK------------------------------------------FEGATVLEPKK 466

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSKT 947
            G Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K+
Sbjct: 467  GAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQKS 526

Query: 948  TGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S  
Sbjct: 527  QGVVPALLDDLAKFRKNAKKLMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGFLGASKG 586

Query: 1004 RFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-------- 1051
                 P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +        
Sbjct: 587  FIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPEGKDQNN 643

Query: 1052 --DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D     
Sbjct: 644  INDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEKG 697

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  +
Sbjct: 698  KVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYPM 753

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++          
Sbjct: 754  EKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----EDD 802

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVSRLCASIEGTSPER 1279
              + + Q  R  D     +   ++D  +Y   Q + P+VS     +E   PE+
Sbjct: 803  DKIDLKQSMRAEDPTFAQNNGLVVDRLFYIDHQLLKPLVSLFDPLVE--DPEK 853


>gi|448936036|gb|AGE59585.1| DNA polymerase [Acanthocystis turfacea Chlorella virus OR0704.3]
          Length = 902

 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 204/820 (24%), Positives = 345/820 (42%), Gaps = 160/820 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+    W+ +S+  S PA  RVS C  EI  +     +V  S   V   PP+ + + ++
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDVEIECNF---TQVGPSD--VVTTPPLVIASWDI 182

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T   +R+                      +A+ +++ G    F  V      +F +   
Sbjct: 183  ETYSRERK---------FPLASNPDDYVTQIATSFQRYGEAEPFKRV------VFCL--- 224

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                D     G  ++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  RAQ+ 
Sbjct: 225  ---NDTAGVPGVEIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYVYGRAQML 280

Query: 680  RVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               ++    +            G++   E+     G+  F    +PG++       L   
Sbjct: 281  VDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD----LLQW 336

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYGETDA 783
            F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E   E    + +Y   D 
Sbjct: 337  FRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDAEDRAVIAKYAAQDT 390

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
             L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD  
Sbjct: 391  LLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDNK 448

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
             +  E K                                          + G  VLEPKK
Sbjct: 449  AWPAEGK------------------------------------------FEGATVLEPKK 466

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSKT 947
            G Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K+
Sbjct: 467  GAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQKS 526

Query: 948  TGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S  
Sbjct: 527  QGVVPALLDDLAKFRKNAKKLMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGFLGASKG 586

Query: 1004 RFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-------- 1051
                 P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +        
Sbjct: 587  FIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPEGKDQNN 643

Query: 1052 --DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D     
Sbjct: 644  INDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEKG 697

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  +
Sbjct: 698  KVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYPM 753

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++          
Sbjct: 754  EKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----EDD 802

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVS 1266
              + + Q  R  D     +   ++D  +Y   Q + P+VS
Sbjct: 803  DKIDLKQSMRAEDPTFAQNNGLVVDRLFYIDHQLLKPLVS 842


>gi|448932259|gb|AGE55819.1| DNA polymerase [Acanthocystis turfacea Chlorella virus MN0810.1]
          Length = 902

 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 204/822 (24%), Positives = 348/822 (42%), Gaps = 164/822 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEI----TVDSPKDIRVSSSSKHVAEVPPVTVT 555
            RK+    W+ +S+  S P+  RVS C  E+    T   P DI  +         PP+ + 
Sbjct: 130  RKLSPSGWVRVSQ--SYPSMTRVSRCDIEVDCNFTQVGPSDITAT---------PPLVIA 178

Query: 556  AINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFP 615
            + +++T   +R+                +     +A+ +++ G    F  V      +F 
Sbjct: 179  SWDIETYSRERK---------FPLATNPEDYVTQIATSFQRYGESEPFKRV------VFC 223

Query: 616  MGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHR 675
            +    E  D     G +++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  R
Sbjct: 224  LN---ETADV---PGVDIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYIYGR 276

Query: 676  AQVCRVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
            AQ+    ++    +            G++   E+     G+  F    +PG++       
Sbjct: 277  AQILVDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD---- 332

Query: 724  LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYG 779
            L   F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E        + +Y 
Sbjct: 333  LLQWFRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDANDRAVIAKYA 386

Query: 780  ETDAWLSMELMFHLSVLPLTRQLTNISGNL--WGKTLQGARAQRVEYL--LLHAFRAKKY 835
              D  L ++L+  L++     ++ N       W     G R Q+V     L    R   Y
Sbjct: 387  AQDTLLPLKLLSKLAIFEDVAEMANAVKIPVDW----VGFRGQQVRAFSCLFGKAREMGY 442

Query: 836  IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
             +PD   +  E K                                          + G  
Sbjct: 443  AIPDNKAWPAEGK------------------------------------------FEGAT 460

Query: 896  VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPH 941
            VLEPKKG Y + I  LDF SLYPSII+ +N+   T+   P               G+   
Sbjct: 461  VLEPKKGAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKF 520

Query: 942  LPSSKTTGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGC 997
              S K+ GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG 
Sbjct: 521  RYSQKSQGVVPALLDDLAKFRKNAKKLMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGF 580

Query: 998  LGFSNSRFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-- 1051
            LG S       P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +  
Sbjct: 581  LGASKGFIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPE 637

Query: 1052 ----DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
                D+I     +A  +  E+ K+YK   +++ + +Y   +L  KK+YAA+K  ++D   
Sbjct: 638  GKDQDNINDHFEVAKWLAGEITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--YEDPAE 695

Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
               I+ KGL +VRRD+S +++E+    L  IL  +     V+     + KV ++    + 
Sbjct: 696  KGKIDVKGLALVRRDFSPITREILQESLDTILFAKDTPTAVKDTREKIRKVLDN----EY 751

Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTS 1225
             +EK+V++KTL      Y + + QPH+ VA + L ++G      +G  VP++        
Sbjct: 752  PMEKFVMSKTLKT---GYKN-EMQPHLIVANKILDRTG--VPVPSGARVPFVYV-----E 800

Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVS 1266
               ++ + Q  R  D     D   ++D  +Y   Q + P+VS
Sbjct: 801  DDDNIDLKQSMRAEDPTFAKDNGLVVDRLFYIDHQLLKPLVS 842


>gi|145514650|ref|XP_001443230.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410608|emb|CAK75833.1| unnamed protein product [Paramecium tetraurelia]
          Length = 980

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 172/689 (24%), Positives = 298/689 (43%), Gaps = 123/689 (17%)

Query: 640  ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
            E  LLN   +    LD D+++G+NI  FD+  +L+RAQ  ++ +  + K GR+  ++   
Sbjct: 222  EEDLLNEFQVFFQGLDPDIIIGYNIQNFDIPYILNRAQNLKLKN--YGKFGRIP-TDQST 278

Query: 700  LRKGRTI---FGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
            ++ G+ +    G   +  I   I GR+  D  +      +  S+SL  ++  Q  K +KE
Sbjct: 279  IKNGKFLSKAMGMRETKDIN--IEGRIQLDMMIHMMKEHKLSSFSLNNVS-FQFLKQQKE 335

Query: 757  VGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL 814
               + ++   Q    E+   +  Y   DA L + LM  L  L    ++  ++G       
Sbjct: 336  DVHYSIIYTLQNKNPETRKRIAVYCLKDAELPILLMDKLCCLYNYAEMARVTGVPVNYLF 395

Query: 815  QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
               +  +V   LL   +   +I+P                         E   + D    
Sbjct: 396  MRGQQIKVASQLLRKAKHYDFIIP------------------------TEHFKSTDQE-- 429

Query: 875  NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT---- 930
                            Y G  VL+P K  Y   I  LDF SLYPSI+  +N+C++T    
Sbjct: 430  ----------------YQGAFVLDPVKNFYKVPIATLDFASLYPSIMMAHNMCYSTLLNT 473

Query: 931  -----------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQ 978
                       V  SP+     +  +   G+LP +L++L+  R+  K  + +     K  
Sbjct: 474  SPFKVGLADEQVTVSPETNAIFVKPNVRKGMLPLILEDLINARKKAKNQLAQETDPFKKA 533

Query: 979  QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN------ 1032
             LD +Q ALK++ANS+YG  G    +     ++  IT  GR++++ T D V  +      
Sbjct: 534  VLDGRQLALKISANSVYGFTGAQVGQLPCLEISASITSFGRQMIQFTRDTVLEHYSKKNG 593

Query: 1033 --LNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLL 1089
               + EVIYGDTDS+M+  G   + KA A+  +    ++KK+ + ++++ + +Y   LL+
Sbjct: 594  AEFDAEVIYGDTDSVMVKFGDYSVEKAMALGREAAALISKKFIQPIKLEFEKVYYPYLLM 653

Query: 1090 KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
             +K+YA  ++  K   P + I+ KG++ VRRD   L +++    L+ +L ++  +  V+ 
Sbjct: 654  NRKRYAG-QLWTKPDKP-DKIDTKGIESVRRDNCFLIRKMVTEILNFLLIKQDEKSAVQY 711

Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTL------------------------------TK 1179
                +     ++   +V + + VITK+L                               K
Sbjct: 712  TKEQI----RNLYLNKVDISELVITKSLNSKKEDKDNNNNNNNNNNKEKKKNQNEDDGNK 767

Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
              + Y   + Q HV VA +++    S   SAGD + YII   QG     +    + A  P
Sbjct: 768  LTKNY--KQKQAHVVVAEKMQNRDASNAPSAGDRIAYIII--QGAKGTKTY---ENAEDP 820

Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
             E+ + D  + ID DYY + QI   + RL
Sbjct: 821  VEVLEKD--FPIDFDYYVNNQIKKPIMRL 847


>gi|448926077|gb|AGE49655.1| DNA polymerase [Acanthocystis turfacea Chlorella virus Can0610SP]
          Length = 902

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 204/820 (24%), Positives = 345/820 (42%), Gaps = 160/820 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+    W+ +S+  S PA  RVS C  EI  +     +V  S   V   PP+ + + ++
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDVEIECNF---TQVGPSD--VVTTPPLVIASWDI 182

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T   +R+                      +A+ +++ G    F  V      +F +   
Sbjct: 183  ETYSRERK---------FPLASNPDDYVTQIATSFQRYGEAEPFKRV------VFCL--- 224

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                D     G  ++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  RAQ+ 
Sbjct: 225  ---NDTAGVPGVEIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYVYGRAQML 280

Query: 680  RVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               ++    +            G++   E+     G+  F    +PG++       L   
Sbjct: 281  VDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD----LLQW 336

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYGETDA 783
            F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E   E    + +Y   D 
Sbjct: 337  FRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDAEDRAVIAKYAAQDT 390

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
             L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD  
Sbjct: 391  LLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDNK 448

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
             +  E K                                          + G  VLEPKK
Sbjct: 449  AWPAEGK------------------------------------------FEGATVLEPKK 466

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSKT 947
            G Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K+
Sbjct: 467  GAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQKS 526

Query: 948  TGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S  
Sbjct: 527  QGVVPALLDDLAKFRKNAKKLMAQAHKDGDDFKEALYDASQRSYKVVMNSVYGFLGASKG 586

Query: 1004 RFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-------- 1051
                 P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +        
Sbjct: 587  FIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPEGKDQNN 643

Query: 1052 --DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D     
Sbjct: 644  INDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEKG 697

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  +
Sbjct: 698  KVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYPM 753

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++          
Sbjct: 754  EKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----EDD 802

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVS 1266
              + + Q  R  D     +   ++D  +Y   Q + P+VS
Sbjct: 803  DKIDLKQSMRAEDPTFAQNNGLVVDRLFYIDHQLLKPLVS 842


>gi|448925748|gb|AGE49327.1| DNA polymerase [Acanthocystis turfacea Chlorella virus Br0604L]
          Length = 902

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 206/833 (24%), Positives = 350/833 (42%), Gaps = 162/833 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+    W+ +S+  S PA  RVS C  E+  +     +V  S   V   PP+ + + ++
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDIEVECNF---TQVGPSD--VVTTPPLVIASWDI 182

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T   +R+                      +A+ +++ G    F  V      +F +   
Sbjct: 183  ETYSRERK---------FPLASNPDDYVTQIATSFQRYGEAEPFKRV------VFCL--- 224

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                D     G  ++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  RAQ+ 
Sbjct: 225  ---NDTAGVPGVEIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYVYGRAQML 280

Query: 680  RVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               ++    +            G++   E+     G+  F    +PG++       L   
Sbjct: 281  VDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD----LLQW 336

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYGETDA 783
            F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E   E    + +Y   D 
Sbjct: 337  FRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDAEDRAVIAKYAAQDT 390

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
             L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD  
Sbjct: 391  LLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDNK 448

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
             +  E K                                          + G  VLEPKK
Sbjct: 449  AWPAEGK------------------------------------------FEGATVLEPKK 466

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSKT 947
            G Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K+
Sbjct: 467  GAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQKS 526

Query: 948  TGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S  
Sbjct: 527  QGVVPALLDDLAKFRKNAKKLMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGFLGASKG 586

Query: 1004 RFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-------- 1051
                 P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +        
Sbjct: 587  FIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPEGKDQKN 643

Query: 1052 --DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D     
Sbjct: 644  INDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEKG 697

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  +
Sbjct: 698  KVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYPM 753

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++          
Sbjct: 754  EKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----EDD 802

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVSRLCASIEGTSPER 1279
              + + Q  R  D     +   ++D  +Y   Q + P+VS     +E   PE+
Sbjct: 803  DKIDLKQSMRAEDPTFAKNNGLVVDRLFYIDHQLLKPLVSLFDPLVE--EPEK 853


>gi|155371745|ref|YP_001427279.1| hypothetical protein ATCV1_Z798L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155125065|gb|ABT16932.1| hypothetical protein ATCV1_Z798L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 902

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 204/820 (24%), Positives = 345/820 (42%), Gaps = 160/820 (19%)

Query: 500  RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
            RK+    W+ +S+  S PA  RVS C  EI  +     +V  S   V   PP+ + + ++
Sbjct: 130  RKLSPSGWVRVSQ--SYPAMTRVSRCDVEIECNF---TQVGPSD--VVTTPPLVIASWDI 182

Query: 560  KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
            +T   +R+                      +A+ +++ G    F  V      +F +   
Sbjct: 183  ETYSRERK---------FPLASNPDDYVTQIATSFQRYGEAEPFKRV------VFCL--- 224

Query: 620  KEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVC 679
                D     G  ++ C S E  ++N  M  + K  +DVL+G+N+  +D   +  RAQ+ 
Sbjct: 225  ---NDTADVQGVEIVSC-SQEADVINAWMDAITKEKTDVLIGYNVFQYDWKYVYGRAQML 280

Query: 680  RVPSSMWSKI------------GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727
               ++    +            G++   E+     G+  F    +PG++       L   
Sbjct: 281  VDDATAEETVFPEKLGYLLEDGGKVVERELASNAFGQNFFYYLDTPGVIQLD----LLQW 336

Query: 728  FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME----LIEYGETDA 783
            F  +R+L    SYSL  ++K  L  D+K+  P   +K+F+  E   E    + +Y   D 
Sbjct: 337  FRKNRNL---ESYSLNNVSKLYLG-DQKDDLP--AMKIFEKFEGDAEDRAVIAKYAAQDT 390

Query: 784  WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKF 841
             L ++L+  L++     ++ N           G R Q+V     L    R   Y +PD  
Sbjct: 391  LLPLKLLSKLAIFEDVAEMANAVK--IPMDWVGFRGQQVRAFSCLFGKAREMGYAIPDNK 448

Query: 842  TYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKK 901
             +  E K                                          + G  VLEPKK
Sbjct: 449  AWPAEGK------------------------------------------FEGATVLEPKK 466

Query: 902  GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD--------------GLVPHLPSSKT 947
            G Y + I  LDF SLYPSII+ +N+   T+   P               G+     S K+
Sbjct: 467  GAYFEPIAALDFASLYPSIIRAHNMSPETIVMEPKFANVPGVEYYEIQTGIGKFRYSQKS 526

Query: 948  TGVLPELLKNLVQRRRMVKTWM----KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
             GV+P LL +L + R+  K  M    K     K    D  Q++ K+  NS+YG LG S  
Sbjct: 527  QGVVPALLDDLAKFRKNAKKLMAQAHKEGDDFKEALYDASQRSYKVVMNSVYGFLGASKG 586

Query: 1004 RFYAKPLAELITQQGREIL----RSTVDLVQNNLNLEVIYGDTDSIMIHSGI-------- 1051
                 P+A  +T  GR ++    R  ++L+  ++   V+YGDTDSIM+   +        
Sbjct: 587  FIPCVPIAASVTATGRNMIDVAARRALELLPGSV---VVYGDTDSIMVKMKLPEGKDQNN 643

Query: 1052 --DDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYE 1108
              D    AK +AG    E+ K+YK   +++ + +Y   +L  KK+YAA+K  F+D     
Sbjct: 644  INDHFEVAKWLAG----EITKEYKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPNEKG 697

Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
             ++ KGL +VRRD+S +++++    L  IL  +     V+     + KV ++    +  +
Sbjct: 698  KVDVKGLALVRRDFSPITRDILKESLDTILFAKDTPTAVKDTREKIRKVLDN----EYPM 753

Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
            EK+V++KTL      Y + + QPH+ VA + L+++G      +G  VP++          
Sbjct: 754  EKFVMSKTLKT---GYKN-EMQPHLIVANKILERTG--VPVPSGARVPFVYV-----EDD 802

Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVS 1266
              + + Q  R  D     +   ++D  +Y   Q + P+VS
Sbjct: 803  DKIDLKQSMRAEDPTFAQNNGLVVDRLFYIDHQLLKPLVS 842


>gi|347826748|emb|CCD42445.1| similar to Similar to dna polymerase delta catalytic subunit (ec
            2.7.7.7) [Botryotinia fuckeliana]
          Length = 616

 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 141/537 (26%), Positives = 242/537 (45%), Gaps = 89/537 (16%)

Query: 768  TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL-- 825
            T ES   L  Y   DA+L   LM  LS L    ++  ++G  +   L  +R Q+V+++  
Sbjct: 9    TPESRRRLAVYCLKDAFLPQRLMDKLSCLENYTEMARVTGVPFNFLL--SRGQQVKFISQ 66

Query: 826  LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
            L      +K ++P                                 N  +++S       
Sbjct: 67   LFRKALEQKLVIP---------------------------------NLSSNSSEEQ---- 89

Query: 886  KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-----------VERS 934
                 Y G  V+EP +G Y   I  LDF SLYPSIIQ +N+C+TT           +E+ 
Sbjct: 90   -----YEGATVIEPTRGYYSVPIATLDFASLYPSIIQAHNLCYTTLLKKDVVEALKLEKD 144

Query: 935  PDGLVP-----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
             D +V       + + +  G+L ++L+ L+  R+  K  +   +   K   L+ +Q ALK
Sbjct: 145  EDYIVTPNGDMFVTTKQRKGLLTQILEELLTARKQAKRELAVETDPFKKAVLNGRQLALK 204

Query: 989  LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYG 1040
            ++ANS+YG  G +  +    P+A   T  GR+++  T   V+    +        +VIYG
Sbjct: 205  ISANSVYGLTGATVGKVPCLPIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYG 264

Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKV 1099
            DTDS+M+  G+ ++A+A  +  +  Q V+ K+ K ++++ + +Y   LL+ KK+YA +  
Sbjct: 265  DTDSVMVKFGVKELAEAMKLGEEAAQYVSSKFIKPIKLEFEKVYYPYLLINKKRYAGLYW 324

Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
               D   Y+ ++ KG++ VRRD   L + V +  L  IL ++  +   + + +++     
Sbjct: 325  TNPD--KYDKMDTKGIETVRRDNCRLVQNVIETVLRMILIDQDVQGAQDYVKDTI----S 378

Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
            D+   ++ + K VITK L K          Q HV++A R+K+    +  + GD V Y+I 
Sbjct: 379  DLLQNKIDMSKLVITKALAKADY----TAKQAHVELAERMKKRDAGSAPTLGDRVAYVII 434

Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
                     S G     R  D +   +    ID  YY   Q+   + R+   I G +
Sbjct: 435  -------KGSAGAKNFERSEDPIFVLENNVPIDTKYYLDNQLAKPLGRIFEPILGET 484


>gi|324120760|dbj|BAJ78771.1| DNA polymerase delta catalytic subunit [Lucidina biplagiata]
          Length = 1045

 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 163/674 (24%), Positives = 299/674 (44%), Gaps = 94/674 (13%)

Query: 636  CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-LKR 694
            C  +E+ +L      +  LD DV  G+NI+ FD+  LL RA+  ++ +  +  +GR L  
Sbjct: 309  CFETEQQMLEAWADFVRDLDPDVFTGYNINNFDIPYLLDRAKHLKLKN--FDFLGRILGI 366

Query: 695  SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
                K    +T FG      +     GR+  D F+  +   +  SY+L  ++   L + +
Sbjct: 367  KSAVKETVNQTKFGKRTFKTVN--FEGRVTYDMFVVMKRDFKLRSYTLNNVSNEILGEQK 424

Query: 755  KEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWG 811
            ++V  + ++   Q    ++   L  Y   DA L + L+ H+       ++  ++G ++  
Sbjct: 425  EDVH-YSIITDLQNGDEQTRRRLAVYCIKDADLPLRLLDHVKSFANDIEMARVTGVSITS 483

Query: 812  KTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDA 871
               +G + + V  LL H+ +   Y +P                                 
Sbjct: 484  LLTKGEQIKVVAQLLRHS-QQSGYFMPT-------------------------------- 510

Query: 872  NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
                      HR       Y G  V+EP +G Y   I  LDF+SLYPSI+  +N+C+TT+
Sbjct: 511  ----------HRYAPSSEQYEGATVIEPIRGYYTDPIATLDFSSLYPSIMIAHNLCYTTL 560

Query: 932  ERS----PDGLVP-----------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK 976
              S      GL              + SS   G+LPE+L+ L+  R+  K  +K      
Sbjct: 561  LHSGMKDKLGLTSDEITVTPSQNMFVKSSVRPGLLPEILQQLLAARKRAKDALKDEQDPV 620

Query: 977  IQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
            ++  L+ +Q ALK++ANS+YG  G    +     ++  +T  GR ++  T   V+ + ++
Sbjct: 621  MRAVLNGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEQTRLEVERHYSV 680

Query: 1036 --------EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRM 1086
                    +VIYGDTDS+M++  +  + +   +  +    +++K+ K ++++ + +Y   
Sbjct: 681  ANGFENDAKVIYGDTDSVMVNFQVKTLEQTMELGREAAGLISQKFVKPIKLEFEKVYFPY 740

Query: 1087 LLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDV 1146
            LL+ KK+YA +     D   Y+ ++ KG++ VRRD   L  +V + CL ++L  R  +  
Sbjct: 741  LLINKKRYAGLYFTRTD--KYDKMDCKGIETVRRDNCTLVVDVINTCLQKLLIYRDPDGA 798

Query: 1147 VESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
            +        ++  D+    V + + VITK LTK   A   A    HV+++ ++ +    +
Sbjct: 799  IAYAK----RIISDLLQNNVDISQLVITKELTKADYATKVA----HVELSKKMTKRDPGS 850

Query: 1207 GCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVS 1266
                GD +PY+I      ++  +    Q+A  P  +   +    ID  YY   Q+   + 
Sbjct: 851  APKLGDRIPYVI-----IAAAKNTPAFQKAEDP--IYVLENNIPIDATYYLENQLSKPLV 903

Query: 1267 RLCASIEGTSPERL 1280
            R+   I G + E +
Sbjct: 904  RIFQPILGDNAESI 917


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,242,363,807
Number of Sequences: 23463169
Number of extensions: 992279547
Number of successful extensions: 2862655
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3687
Number of HSP's successfully gapped in prelim test: 2157
Number of HSP's that attempted gapping in prelim test: 2829676
Number of HSP's gapped (non-prelim): 15242
length of query: 1517
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1361
effective length of database: 8,698,941,003
effective search space: 11839258705083
effective search space used: 11839258705083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 84 (37.0 bits)