BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000430
(1517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana
GN=POLA PE=3 SV=2
Length = 1524
Score = 1920 bits (4973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1538 (62%), Positives = 1197/1538 (77%), Gaps = 37/1538 (2%)
Query: 1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
M + GRRRSRGAEAS+R + LERLKA+R+GG RS GY+I+L+ PI+DTV ++
Sbjct: 1 MSGDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDE 60
Query: 61 EYDALVARRREEARGFIVDDD---GLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQ 117
EYDALV+RRREEARGF+V+D LGY DEG+EEDWS P S+D+ G+ S + +
Sbjct: 61 EYDALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLK 120
Query: 118 RIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDE 177
+ +K ++ V+K NP+L AAA + G+ RLS+M TS++ FKK K+ + E ++DE
Sbjct: 121 KKKKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILDE 179
Query: 178 VLAEFAPDEADRERRRR---------SVSSNIKSFVSVNSVKTNSQLVTNST---NSVKE 225
++A+ PDE+DR++ R ++ N K F +S+ T ST +SV
Sbjct: 180 IIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKESEPTPSTYEGDSVSM 239
Query: 226 NSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV-KEKVKDEVNEDVKECKK 284
+++L+ ++ + E+ EL +++ K D ++ K +VK E+ VKE
Sbjct: 240 DNELMKEEDMKESEVIPSETMELL-----GSDIVKEDGSNKIRKTEVKSELG--VKEVFT 292
Query: 285 LNAKIST-EKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQ-ESEFEVDDDGSLPFYILDA 342
LNA I EKD LSATAGWKE G + G + + ++EF++D DGSL F+ILDA
Sbjct: 293 LNATIDMKEKDSALSATAGWKEAMGKVGTENGALLGSSSEGKTEFDLDADGSLRFFILDA 352
Query: 343 HEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
+E+ GA+MGT+YLFGKVK G T+ SCCVVVKN+QRCVYAIPN +F + E++ LE++ +
Sbjct: 353 YEEAFGASMGTIYLFGKVKMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSHELIMLEQEVK 412
Query: 403 ESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVL 462
+SR+SP +FR KL ++A LK EIA +LL LNVSN+ ++PVKR YAF + ++PAGE YVL
Sbjct: 413 DSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERPDVPAGEQYVL 472
Query: 463 KINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRV 522
KINY FKD PLP DLKGE+F +LLG+H+SALE F++KRK+ GP WL IS FS+C + V
Sbjct: 473 KINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISSFSTCSPSEGV 532
Query: 523 SWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHK 582
SWCK+E+TV SPKDI + S + V PP VTAINLKT+ N++Q+++EIVSASV+C H
Sbjct: 533 SWCKFEVTVQSPKDITILVSEEKVVH-PPAVVTAINLKTIVNEKQNISEIVSASVLCFHN 591
Query: 583 AKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERA 642
AKID PM A E K+ G+LSHFTVVR +G +P+G+ KE +DRNSK G NVL E+SERA
Sbjct: 592 AKIDVPMPAPERKRSGILSHFTVVRNPEGTGYPIGWKKEVSDRNSKNGCNVLSIENSERA 651
Query: 643 LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK 702
LLNRL +EL KLDSD+LVGHNISGFDLDVLL RAQ C+V SSMWSKIGRLKRS MPKL K
Sbjct: 652 LLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-K 710
Query: 703 GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
G + +GSGA+PG+MSCIAGRLLCDT LCSRDLL+EVSYSLT L+KTQLN+DRKE+ P+D+
Sbjct: 711 GNSNYGSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDI 770
Query: 763 LKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRV 822
KMFQ+ ++L+ELIE GETDAWLSMELMFHLSVLPLT QLTNISGNLWGKTLQGARAQR+
Sbjct: 771 PKMFQSSKTLVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRI 830
Query: 823 EYLLLHAFRAKKYIVPDKFTY-VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
EY LLH F +KK+I+PDK + +KE K +K+R ++ EDRNV+EL + D +ND S
Sbjct: 831 EYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDEL-DADLTLENDPSKGS 889
Query: 882 HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
K K+GPAYAGGLVLEPK+GLYDKY+LLLDFNSLYPSIIQEYNICFTT+ RS DG VP
Sbjct: 890 --KTKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRSEDG-VPR 946
Query: 942 LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
LPSS+T G+LP+L+++LV R+ VK MK +GLK +LDI+QQALKLTANSMYGCLGFS
Sbjct: 947 LPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLKYWELDIRQQALKLTANSMYGCLGFS 1006
Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
NSRFYAKPLAELIT QGR+IL+ TVDLVQN+LNLEVIYGDTDSIMIHSG+DDI + KAI
Sbjct: 1007 NSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIK 1066
Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
KVIQEVNKKY+CL+ID DG+YKRMLLL+KKKYAAVK+QFKDG P E IERKG+DMVRRD
Sbjct: 1067 SKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGKPCEDIERKGVDMVRRD 1126
Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
WSLLSKE+GD CLS+IL SCEDVVE+IHN LMK++E+MR+GQVALEKYVITKTLTKPP
Sbjct: 1127 WSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKTLTKPP 1186
Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT-SSGSSVGIAQRARHPD 1240
AYPD+K+QPHVQVALR++Q GY G +A DTVPYIIC EQG SS SS GIA+RARHPD
Sbjct: 1187 AAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPD 1246
Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMS 1300
E+K +W++DIDYY +QQIHPVVSRLCA I+GTSPERLA+CLGLDPSK++SK ++ S
Sbjct: 1247 EVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSKYRSKSNDATS 1306
Query: 1301 SDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYN- 1359
SDPS+SLLFA DEERY+ CEPL L+CPSCS+ F+CP++ SS+C S+S+KP+ PETE +
Sbjct: 1307 SDPSTSLLFATSDEERYKSCEPLALTCPSCSTAFNCPSIISSVCASISKKPATPETEESD 1366
Query: 1360 --FWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSL 1417
FW L CPKC +E G ISP MIANQVKRQ DGFVSMYYKG+M+C+DE+CK+TT S
Sbjct: 1367 STFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVSMYYKGIMVCEDESCKHTTRSP 1426
Query: 1418 NLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
N RL+G+ ERGTVCPNYP CNG L+RKYTEADLYKQL+YFCH+LDTQ +EKM++ +I
Sbjct: 1427 NFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCSLEKMDVGVRIQ 1486
Query: 1478 LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515
+EK + KIRP V AA+ + R+RCAYGW++L DI I
Sbjct: 1487 VEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1524
>sp|O48653|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp.
japonica GN=Os01g0868300 PE=2 SV=2
Length = 1534
Score = 1915 bits (4961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1541 (64%), Positives = 1209/1541 (78%), Gaps = 47/1541 (3%)
Query: 8 VAGRR-RSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALV 66
+GRR R+RG+EA AR+ ALERL+A+R GG R+ +V +++E PIYDTVAE++Y ALV
Sbjct: 10 ASGRRSRARGSEAVARSAALERLRAIRDGGARAAAAV--QVRIEAPIYDTVAEEDYAALV 67
Query: 67 ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKE 126
ARRR++A FIVDDDGLGY D+G+EEDW+ + SSSD+ S DG+ ++R + R + +
Sbjct: 68 ARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEGS-DGEDGAPRKRKQPRPQSK 126
Query: 127 NNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKES----ESVIDEVLAEF 182
SL+AAAAMMGKQRLS+M TS+ +F+K ++ ++S +S++D+V+AEF
Sbjct: 127 RPPQQSAAAASLSAAAAMMGKQRLSSMFTSS-VFRKPGSDRGRDSSLAADSIVDDVIAEF 185
Query: 183 APDEADRERRRRSVSSNIKS--------FVSVNSVKTNSQLVTNSTN--SVKENSDLINN 232
APD+ DRE RRR V + +V ++ + S N E SD N+
Sbjct: 186 APDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTAMAFRSDNVFEAHEVSDHGND 245
Query: 233 FVQIQNCDVVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVK--ECKKLNAKIS 290
DV E K L S EL N +E + K E N +VK + +LNAKI
Sbjct: 246 MDMELKPDVEMEPK-LDTPLGASAELANNSNSLE---EPKQEANGEVKIEKVHRLNAKIK 301
Query: 291 TEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSLPFYILD 341
TE + SATAGW ++ G G+ EG N + SEFE+ D G+LPFYILD
Sbjct: 302 TEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GALPFYILD 360
Query: 342 AHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDA 401
A+E+ GAN GT+YLFGKV+ G HSCCVVVKNMQRC+YAIP+ +F D I +LEK++
Sbjct: 361 AYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTISRLEKNS 420
Query: 402 EESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYV 461
S SP + R L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P GE YV
Sbjct: 421 TTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYV 479
Query: 462 LKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQR 521
LKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +CPA QR
Sbjct: 480 LKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQR 539
Query: 522 VSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCH 581
VSWCK+E+TVDSPKDI V +S + EVPPV V A+NLKT+ N++ +V+EIVSASV+CCH
Sbjct: 540 VSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSASVICCH 598
Query: 582 KAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSER 641
+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL ESSER
Sbjct: 599 RVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLALESSER 658
Query: 642 ALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLR 701
ALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS MP+L
Sbjct: 659 ALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRSVMPRLT 718
Query: 702 KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHD 761
KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RKEV PHD
Sbjct: 719 KGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHD 778
Query: 762 VLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
+ MFQ+ +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQG+RAQR
Sbjct: 779 IPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQR 838
Query: 822 VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
VEYLLLHAF A+K+IVPDKF KE K++ N E +E D + D++ H D
Sbjct: 839 VEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDE---ADPSIDDEGHHVD 895
Query: 882 HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH 941
K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS DG VP+
Sbjct: 896 QGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPN 955
Query: 942 LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFS 1001
LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMYGCLGFS
Sbjct: 956 LPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFS 1015
Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIA 1061
NSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+G+DDI++AK IA
Sbjct: 1016 NSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIA 1075
Query: 1062 GKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
GKVIQEVNKKY+CLEIDLDG+YKRMLLLKKKKYAA+KV DG E IERKGLDMVRRD
Sbjct: 1076 GKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGLDMVRRD 1134
Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP 1181
WSLLSKE+GDFCL+QILS SC+DV+ESIH+SL++VQE MR GQ LEKY+ITK+LTK P
Sbjct: 1135 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAP 1194
Query: 1182 EAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241
E YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + S S GIAQRARHP+E
Sbjct: 1195 EDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEE 1253
Query: 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSS 1301
LK+ KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQS+ +E+ +
Sbjct: 1254 LKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESDNQ 1313
Query: 1302 DPSSSLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP----ET 1356
D SS LL + DE ERYRGCEPL LSCPSCS+TFDCP V S I S S S P +
Sbjct: 1314 DTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGNDA 1373
Query: 1357 EYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCS 1416
NFWR +RCP+CP++ + R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE CKY+T S
Sbjct: 1374 SINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHS 1433
Query: 1417 LNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKI 1476
+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D R +EK++ A++
Sbjct: 1434 VNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARL 1493
Query: 1477 PLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
P EKE + + LA VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1494 PFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1534
>sp|P09884|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1
SV=2
Length = 1462
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1514 (35%), Positives = 818/1514 (54%), Gaps = 159/1514 (10%)
Query: 1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
+ D V+ R R R EALERLK ++G+ Y ++ +Y+ V E+
Sbjct: 10 LSDSGSFVSSRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDFTGVYEEVDEE 64
Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
+Y LV R+++ IVDDDG+GY ++G+E D + +D++ DG+ K +R
Sbjct: 65 QYSKLVQARQDDDW--IVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRN 122
Query: 120 EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
K+ V KPN + A GK+ T+ SKD + + ++
Sbjct: 123 VKK------LAVTKPNNIKSMFIACAGKK------TADKAVDLSKDGLLGDILQDLNTET 170
Query: 180 AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
+ P +++RS+ ++ F SV++ S S KE ++
Sbjct: 171 PQITPPPVMILKKKRSIGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 229
Query: 231 NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNA 287
+ VQ+++ + +ES +++E D E+ + D + K D+ +E +E K+
Sbjct: 230 GDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD-LEPMAAKAWDKESEPAEEVKQ--- 285
Query: 288 KISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFE---------VDDDGSLPFY 338
+ + K + + +VS + + EG S + QE + + D++ FY
Sbjct: 286 EADSGKGTVSYLGSFLPDVSCWD-IDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFY 344
Query: 339 ILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMK 396
LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P MK
Sbjct: 345 WLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE--------MK 395
Query: 397 LEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPA 456
++ + + +P++ ++DV +IA + + + PV++ YAF ++P
Sbjct: 396 IDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNYAFEIPDVPE 448
Query: 457 GENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSC 516
Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP WL + S
Sbjct: 449 KSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVK--SPQ 505
Query: 517 PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSAS 576
Q VSWCK E P + V PP+ V A ++KT+ N + NEI++ +
Sbjct: 506 LLNQPVSWCKVEAMALKPDLVNVIKD----VSPPPLVVMAFSMKTMQNAKNHQNEIIAMA 561
Query: 577 VVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCC 636
+ H +D KP SHF VV K IFP F + +N K
Sbjct: 562 ALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----V 611
Query: 637 ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+ P WSKIGRLKRS
Sbjct: 612 AATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSN 669
Query: 697 MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
MPKL GR+ FG + GR++CD + +++L+R SY L++L + L +R
Sbjct: 670 MPKL-GGRSGFGE------RNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVV 722
Query: 757 VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
+ ++ M+ L+ L+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G
Sbjct: 723 IPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 782
Query: 817 ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
R++R E+LLLHAF YIVPDK + K ++L +ED D D
Sbjct: 783 GRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QKLGDEDEEIDGD 826
Query: 877 TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
T N ++KG++ AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R
Sbjct: 827 T--NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAS 884
Query: 934 -----SPDG---LVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDI 982
+ DG +P LP S G+LP ++ LV+RR+ VK MK + I Q DI
Sbjct: 885 EAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944
Query: 983 QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL T ++VQ +NLEVIYGDT
Sbjct: 945 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDT 1003
Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-F 1101
DSIMI++ ++ + + KV EVNK YK LEID+DG++K +LLLKKKKYAA+ V+
Sbjct: 1004 DSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPT 1063
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
DG E KGLD+VRRDW L+K+ G+F + QILS++S + +VE+I L+++ E++
Sbjct: 1064 SDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENV 1123
Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
+G V + ++ I K LTK P+ YPD K+ PHV VAL + G AGDTV Y+IC
Sbjct: 1124 LNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-- 1180
Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
GS++ +QRA P++L+K D ID YY +QQIHPVV+R+C I+G +A
Sbjct: 1181 ---QDGSNLTASQRAYAPEQLQKQDN-LTIDTQYYLAQQIHPVVARICEPIDGIDAVLIA 1236
Query: 1282 DCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPA 1338
LGLDP++F+ + + +LL + DEE+YR CE CP+C +
Sbjct: 1237 TWLGLDPTQFRV--HHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT------ 1288
Query: 1339 VCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVS 1396
+I +V + S + E + +R + C P ++N++ F+
Sbjct: 1289 --ENIYDNVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV------QLSNKLIMDIRRFIK 1339
Query: 1397 MYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTY 1456
YY G ++C++ TC+ T L L+ + G +CP + L +Y++ LY QL +
Sbjct: 1340 KYYDGWLICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCF 1394
Query: 1457 FCHLLDTQRGIEKM 1470
+ ++ D + +EK+
Sbjct: 1395 YRYIFDAECALEKL 1408
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/1521 (34%), Positives = 798/1521 (52%), Gaps = 148/1521 (9%)
Query: 1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
+ D VA R R R EALERLK ++G+ Y ++ +Y+ V E+
Sbjct: 16 VSDSGSFVASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70
Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE-EDWSVAGLPSSSDDESLDGQRSIKKQRI 119
+Y LV R+++ VDDDG+GY ++G+E D + + E DG+ K ++
Sbjct: 71 QYSKLVQARQDDDWI--VDDDGIGYVEDGREIFDDDLEDDALDTCGEGSDGKAHRKDRKD 128
Query: 120 EKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVL 179
K+ +V KPN A GK+ T+ SKD+ + + ++
Sbjct: 129 VKK------PSVTKPNNIKAMFIASAGKK------TTDKTVDLSKDDLLGDILQDLNTET 176
Query: 180 AEFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKE---------NSDLI 230
+ AP +++RS ++ F SV++ S S KE ++
Sbjct: 177 PQIAPPPVLIPKKKRSTGASPNPF-SVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFA 235
Query: 231 NNFVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECK-KLN 286
+ Q + + +ES +++E D + + D V K+ D+ +E V+ K + +
Sbjct: 236 GDLAQPECPEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPVEGVKHEAD 295
Query: 287 AKISTEK--DPLLSATAGWK--EVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDA 342
+ T D L + W + + +L E + N DD+ FY LDA
Sbjct: 296 PETGTTSFLDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDA 355
Query: 343 HEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKD 400
+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P MK++ +
Sbjct: 356 YEDPYN-QPGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE--------MKIDLN 406
Query: 401 AEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENY 460
+ +P+ ++DV ++I+ + + + IV ++ YAF ++P Y
Sbjct: 407 TGKETATPIT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNYAFEIPDVPEKSEY 459
Query: 461 VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
L++ Y + P LP +LKGE F + GT++S+LELFL+ RK+KGP WL + P
Sbjct: 460 -LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP- 517
Query: 521 RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
+SWCK+E P + V PP+ V + ++KT+ N + +EI++ + +
Sbjct: 518 -ISWCKFEAMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNVQNHQHEIIAMAALVH 572
Query: 581 HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSE 640
H +D KP +HF VV K IFP F + +N + ++E
Sbjct: 573 HNFPLDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATE 622
Query: 641 RALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL 700
R LL + +++KLD D+LVGHNI GF+L+VLL R C+VP WSKIGRL+RS MPKL
Sbjct: 623 RTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL 680
Query: 701 RKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPH 760
GS + G + GR++CD + ++L+ SY L++L + L +R +
Sbjct: 681 -------GSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTE 733
Query: 761 DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQ 820
++ M+ L+ L+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++
Sbjct: 734 NIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 793
Query: 821 RVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHN 880
R E+LLLHAF YIVPDK + K +Q+ +ED D DT N
Sbjct: 794 RNEFLLLHAFYENNYIVPDKQIFRK----PQQKPG------------DEDEEIDGDT--N 835
Query: 881 DHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-- 938
++KG++ AYAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+NICFTTV+R
Sbjct: 836 KYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETLK 895
Query: 939 ---------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA--SGLKIQQLDIQQQA 986
+P LP G+LP ++ LV+RR+ VK MK + + Q DI+Q+A
Sbjct: 896 ATEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKA 955
Query: 987 LKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
LKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL T ++VQ +NLEVIYGDTDSIM
Sbjct: 956 LKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIM 1014
Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGM 1105
I++ ++ + + KV EVNK YK LEID+DG++K +LLLKKKKYAA+ V+ DG
Sbjct: 1015 INTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGN 1074
Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
E KGLD+VRRDW L+K+ G+F + QILS++S + +VE+I L+++ E++ +G
Sbjct: 1075 YITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGS 1134
Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
V + ++ I K LTK P+ YPD K+ PHV VAL + G AGDTV Y+IC
Sbjct: 1135 VPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----Q 1188
Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLG 1285
GS++ QRA P++L+K D ID YY +QQIHPVV+R+C I+G +A LG
Sbjct: 1189 DGSNLPATQRAYAPEQLQKQDN-LAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLG 1247
Query: 1286 LDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
LD ++F+ + + + +LL + DEE+Y+ CE CPSC + V
Sbjct: 1248 LDSTQFRV--HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLCPSCGTENIYDNVFEG 1305
Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
M + E N + C P ++N++ + YY G
Sbjct: 1306 SGMDM-------EPSLNRCSNIDCKASPATFMV------QLSNKLIMDIRRCIKKYYDGW 1352
Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLL 1461
++C++ TC+ L L + G +C P C ++R +Y++ LY QL ++ ++
Sbjct: 1353 LICEEPTCRNRIRRLPLHF---SRNGPLC---PACMKAVLRPEYSDKSLYTQLCFYRYIF 1406
Query: 1462 DTQRGIEKMEISAKIPLEKEL 1482
D +EK+ K L+K+
Sbjct: 1407 DADCALEKLPEHEKDKLKKQF 1427
>sp|Q9DE46|DPOLA_XENLA DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1
PE=2 SV=1
Length = 1458
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1217 (38%), Positives = 678/1217 (55%), Gaps = 137/1217 (11%)
Query: 332 DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
DGS FY LDA+E + G +YLFGKV ++ + SCCV VKN++R VY +P
Sbjct: 336 DGSQVFRFYWLDAYED-QYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPREN 394
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
Q + KD + +S M ++ + A+ K +I + V + Y
Sbjct: 395 RVQ----LSTGKDTG-APVSMMHVYQEFNE-AVAEKYKIMK---------FKSKKVDKDY 439
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++PA Y L++ Y P LP DLKGE F + GT++S+LELFL+ RK+KGPSW
Sbjct: 440 AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 498
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L I S + Q +SWCK E V P + V K +A PPV V ++++KTV N +
Sbjct: 499 LEIK--SPQLSSQPMSWCKVEAVVTRPDQVSVV---KDLAP-PPVVVLSLSMKTVQNAKT 552
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEIV+ + + H +D +P +HF V+ KL+ IFP +N+ +N+
Sbjct: 553 HQNEIVAIAALVHHTFPLDKAP-----PQPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA 607
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
+ +ER LL + +++K+D DV+VGH+I GFDL+VLL R C+VP WS
Sbjct: 608 N-----IEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP--FWS 660
Query: 688 KIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAK 747
KIGRL+RS MPKL GR+ F + GR++CD + +++L+R SY L++L
Sbjct: 661 KIGRLRRSVMPKL-GGRSGFAE------RNAACGRIICDIEISAKELIRCKSYHLSELVH 713
Query: 748 TQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
L +R + P ++ + L+ ++E DA +++M L+VLPL Q+TNI+G
Sbjct: 714 QILKAERVVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAG 773
Query: 808 NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELT 867
N+ +TL G R++R EYLLLHAF +IVPDK + K +++ T
Sbjct: 774 NVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKK-----------------MQQTT 816
Query: 868 NEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC 927
ED N D T N ++ K+ AYAGGLVLEPK G YDK+ILLLDFNSLYPSIIQEYNIC
Sbjct: 817 VED-NDDMGTDQNKNKSRKKA-AYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNIC 874
Query: 928 FTTVERSPDGL--------VPHLPSSK-TTGVLPELLKNLVQRRRMVKTWMKTAS---GL 975
FTTV R +P LP S G+LP ++ LV+RRR VK MK L
Sbjct: 875 FTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDL 934
Query: 976 KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
+Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T QGREIL T ++VQ +NL
Sbjct: 935 YLQ-YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQK-MNL 992
Query: 1036 EVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYA 1095
EVIYGDTDSIMI++ +++ + + +V E+NK YK LEID+DG++K +LLLKKKKYA
Sbjct: 993 EVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYA 1052
Query: 1096 AVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSL 1154
A+ V+ DG E KGLD+VRRDW L+K+ G++ +SQILS++ + +VE+I L
Sbjct: 1053 ALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKL 1112
Query: 1155 MKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTV 1214
++ E++ +G V + +Y I K LTK P+ YPD K+ PHV VAL + G AGDT+
Sbjct: 1113 TEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQG-GRKVKAGDTI 1171
Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
Y+IC GS++ +QRA ++L+K + ID YY SQQ+HPVV+R+C I+G
Sbjct: 1172 SYVIC-----QDGSNLSASQRAYAQEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPIDG 1225
Query: 1275 TSPERLADCLGLDPSKF-------QSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSC 1327
+A LGLDPS+F Q + ++ + PS + DEE+YR CE C
Sbjct: 1226 IDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGGPSQ-----LTDEEKYRDCERFKFFC 1280
Query: 1328 PSCSSTFDCPAVCSSICMSVS---EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIA 1384
P C + V + + ++ SKPE C P + +
Sbjct: 1281 PKCGTENIYDNVFDGSGLQIEPGLKRCSKPE----------CDASPLDYVI------QVH 1324
Query: 1385 NQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR- 1443
N++ ++ YY G ++C+++TC+ T L L + G +C C+ +R
Sbjct: 1325 NKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRLPLSF---SRNGPIC---QACSKATLRS 1378
Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKM-------EISAKIPLEKELNKIRPVVALAASTV 1496
+Y E LY QL ++ + D +EK+ + K+ E E N+ + + STV
Sbjct: 1379 EYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKKKLFQESE-NQYKKL----KSTV 1433
Query: 1497 QRIRERCAYGWVKLNDI 1513
++ R Y V L+ +
Sbjct: 1434 DQVLSRSGYSEVNLSKL 1450
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
M D A R R E S R EALERLK ++G+ V Y ++ + IY+ V E
Sbjct: 1 MSDSGSFAASRSRREKTEKSGRKEALERLKRA-----KAGEKVKYEVEQVSSIYEEVDEA 55
Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQE 91
EY LV R + +IVDDDG GY ++G+E
Sbjct: 56 EYSKLV--RDRQDDDWIVDDDGTGYVEDGRE 84
>sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1
SV=2
Length = 1465
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1543 (34%), Positives = 802/1543 (51%), Gaps = 187/1543 (12%)
Query: 1 MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED 60
+ D A R R R EALERLK ++G+ Y ++ +Y+ V E+
Sbjct: 16 VSDSGSFAASRARREKKSKKGRQEALERLKK-----AKAGEKYKYEVEDLTSVYEEVDEE 70
Query: 61 EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE 120
+Y LV R+++ VDDDG+GY ++G+E + D G+ S K +
Sbjct: 71 QYSKLVQARQDDDWI--VDDDGIGYVEDGRE----IFDDDLEDDALDTCGKGSDGKAHRK 124
Query: 121 KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA 180
R K +V KPN A GK+ T+ SKD+ + + ++ A
Sbjct: 125 DR-KDVKKPSVTKPNNIKAMFIASAGKK------TTDKAVDLSKDDLLGDILQDLNTETA 177
Query: 181 EFAPDEADRERRRRSVSSNIKSFV-----SVNSVKTNSQLVTNS---TNSVKENSDLINN 232
+ P +++RS + + F ++ S K S ++ N T + ++L
Sbjct: 178 QITPPPVLIPKKKRSTGALLNPFSVHTPKAIPSGKPASPVLRNEPLLTPIPLKRAELAGE 237
Query: 233 FVQIQNCDVVEESKELKWES---DNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKI 289
Q + + +E +++E D S + K D V K D+ E V+ ++
Sbjct: 238 LAQPECPEDEQELGVMEFEDGDFDESMDTEKVDE-KPVTAKTWDQETEPVE-------RV 289
Query: 290 STEKDP----------LLSATAGWK------------EVSGGNMVLDEGKSGLNCQESEF 327
E DP L + W +V N+ L +G
Sbjct: 290 EHEADPERGTTSYLENFLPDVSCWDIDQDDESIPQEVQVDSSNLPLVKG----------- 338
Query: 328 EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPN 385
DD+ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 339 -ADDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPR 396
Query: 386 GPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKR 445
MK + + + P+ ++DV ++I+ + + + IV ++
Sbjct: 397 E--------MKFDLNTGKETAIPVT----MKDVYEEFDSKISAKYKIMKFKSKIV---EK 441
Query: 446 RYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGP 505
YAF ++P Y L++ Y + P LP +LKGE F + GT++S+LELFL+ RK+KGP
Sbjct: 442 NYAFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGP 500
Query: 506 SWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNK 565
WL + P +SWCK+E+ P + V PP+ V + ++KT+ N
Sbjct: 501 CWLEVKNPQLLNQP--ISWCKFEVMALKPDLVNVIKD----VSPPPLVVMSFSMKTMQNV 554
Query: 566 RQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
+ +EI++ + + H +D +P +HF VV K IFP F + + +
Sbjct: 555 QNHQHEIIAMAALVHHSFALDKAP-----PEPPFQTHFCVVSKPKDCIFPCDFKEVISKK 609
Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
N K ++ER L+ + +++K+D D+LVGHNI F+L+VLL R C+VP
Sbjct: 610 NMKVE-----IAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVP--Y 662
Query: 686 WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
WSKIGRL+RS MPKL GS + G + GR++CD + +++L+ SY L++L
Sbjct: 663 WSKIGRLRRSNMPKL-------GSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSEL 715
Query: 746 AKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
+ L +R + ++ M+ L+ L+E+ DA +++M L+VLPL Q+TNI
Sbjct: 716 VQQILKTERIVIPTENIRNMYSESSYLLYLLEHIWKDARFILQIMCELNVLPLALQITNI 775
Query: 806 SGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
+GN+ +TL G R++R E+LLLHAF YIVPDK + K ++
Sbjct: 776 AGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQ----------------QK 819
Query: 866 LTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 925
L +ED D DT N ++KG++ YAGGLVL+PK G YDK+ILLLDFNSLYPSIIQE+N
Sbjct: 820 LGDEDEEIDGDT--NKYKKGRKKATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFN 877
Query: 926 ICFTTVERSPDGL-----------VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTA- 972
ICFTTV+R + +P LP G+LP ++ LV+RR+ VK MK
Sbjct: 878 ICFTTVQRVTSEVQKATEDEEQEQIPELPDPNLEMGILPREIRKLVERRKQVKQLMKQQD 937
Query: 973 -SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
+ + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L+T +GREIL T D+VQ
Sbjct: 938 LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQK 997
Query: 1032 NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKK 1091
+NLEVIYGDTDSIMI++ ++ + + KV EVNK YK LEID+D ++K +LLLKK
Sbjct: 998 -MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDAVFKSLLLLKK 1056
Query: 1092 KKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESI 1150
KKYAA+ V+ DG E KGLD+VRRDW L+K+ G+F + QILS++S + +VE+I
Sbjct: 1057 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1116
Query: 1151 HNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
L+++ E++ +G V + ++ I K LTK P+ YPD K+ PHV VAL + G A
Sbjct: 1117 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQG-GRKVKA 1175
Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
GDTV Y+IC GS++ QRA P++L+K D ID YY +QQIHPVV+R+C
Sbjct: 1176 GDTVSYVIC-----QDGSNLTATQRAYAPEQLQKLDN-LAIDTQYYLAQQIHPVVARICE 1229
Query: 1271 SIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFA---VGDEERYRGCEPLILSC 1327
I+G +A LGLD ++F+ + + + +LL + DEE+Y+ CE C
Sbjct: 1230 PIDGIDAVLIALWLGLDSTQFRV--HQYHKDEENDALLGGPAQLTDEEKYKDCEKFKCLC 1287
Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIAN 1385
PSC + +I +V E S + E + +R + C P ++N
Sbjct: 1288 PSCGT--------ENIYDNVFEG-SGLDMEPSLYRCSNVDCKVSPLTFMV------QLSN 1332
Query: 1386 QVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRL-IGDAERGTVCPNYPRCNGRLVR- 1443
++ + YY G ++C++ TC CS RL + + G +C P C ++R
Sbjct: 1333 KLIMDIRRCIKKYYDGWLICEEPTC----CSRLRRLPLHFSRNGPLC---PVCMKAVLRP 1385
Query: 1444 KYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIR 1486
+Y++ LY QL ++ ++ D +EK+ K L+K+ +R
Sbjct: 1386 EYSDKSLYTQLCFYRYIFDADCALEKLTEHEKDKLKKQFFPLR 1428
>sp|Q94636|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1
Length = 1492
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/1503 (32%), Positives = 761/1503 (50%), Gaps = 180/1503 (11%)
Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGY---GDEGQEEDWSV--AGLPSSSDDES 107
I++ + ++EY+ + R+ + FIVDDDG GY G E + D V G +
Sbjct: 14 IFEEIDDNEYEKIQDSRKND--DFIVDDDGYGYRDHGGEIWDRDGDVEEVGKKKKKKQNN 71
Query: 108 LDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEK 167
D +I + K+ + N NPS + +Q M +F++ +
Sbjct: 72 HDPNENIMNYMMPASTLKKKS-NAASTNPSAQQKPKVSVEQSRDIM---NNLFQQLDAKD 127
Query: 168 VKESESV-------IDEVLAEFAPDEADRERRRRSVS----SNIKSFVSVNSVKTNSQLV 216
V E E V + E+ A ++ + R SV+ + +K + +
Sbjct: 128 VDELEDVNEAKNMFVQEMNRPVAFNKEEDFNNRYSVTLESREEQERRRQSEQLKQQANIG 187
Query: 217 TNSTN----SVKENSDLI-----NNFVQIQNCDVVEESKELKWESDNSTELTKRDNFVEV 267
N ++ S K D N++ QN V +SK E N + +
Sbjct: 188 QNQSDVNPFSKKRKLDEFQQVQANSYQSKQNSHSVSKSKPGDHEMANHADGVDLNLLAID 247
Query: 268 KEKVKDEVNEDVKECKKLNAKISTEKDPLLSATAG----------WKEVSGGNMVLDE-- 315
K+ D ++ + + +S+ ++ +T G W+++ N V ++
Sbjct: 248 DTKMTDSHPSEIITQNQRASAVSSVNQQIMESTNGKNQLEKNDTEWQQMKEKNAVFNQDL 307
Query: 316 --GKSGL--NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SC 369
+ L N Q+ +++DG+L FY +DAHE+ +GA+ L++FGK+ SC
Sbjct: 308 RMNDNALMSNQQDYPLPLNEDGTLSFYWIDAHEENNGAD---LFVFGKIYQHEERKFVSC 364
Query: 370 CVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQ 429
+ V MQR ++ +P ++ M E++ E++R M G++
Sbjct: 365 SIKVNGMQRELFVLPKMS-GKSRAAMTTEEEKEQARKVMMELE--------GVRKRFPA- 414
Query: 430 LLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTH 489
++ + PV R+YAF + I GE+ +KI Y P LP+ ++G F + G +
Sbjct: 415 -----ITKWRCKPVTRKYAF-ELPIQHGEHQFVKIKYDATFPSLPSTVQGNTFECIFGAN 468
Query: 490 SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVS-----WCKYEITVDSPKDIRVSSSSK 544
S LE F++KRK++GP W++I PQ+V+ WCK EI V +PKDI ++
Sbjct: 469 QSMLESFILKRKIRGPCWMTIRN------PQKVTDFRRTWCKQEILVSNPKDIEITLDDL 522
Query: 545 HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFT 604
+ E+PP+T +KT Q+ NEI S + + P K + FT
Sbjct: 523 NKTELPPLTSVTFAIKTC-RSSQNTNEIAMLSCIVNENISQEGP------SKIDVHKSFT 575
Query: 605 VVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
++RKLDG P+ + + D+ + + ER L+ + ++Y+LD D++V HN+
Sbjct: 576 LLRKLDGKPMPIEYERAFRDKKD----SFIQFFQHERQLIEAFVAKIYQLDPDLMVAHNL 631
Query: 665 SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRK---GRTIFGSGASPGIMSCIAG 721
G D+LL R Q+ ++ S WS+IGRLK++++P + G GS P ++C G
Sbjct: 632 CGGMFDLLLARIQMLKI--SHWSRIGRLKKNQIPNKKSDQSGANYGGSQWIPRQVTC--G 687
Query: 722 RLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGET 781
RLL DTFL +++L+RE +Y LT LAK QL KDR + + + + L +LI++ E
Sbjct: 688 RLLVDTFLTAKELIRETNYDLTHLAKVQLQKDRIDFDDDLLPTFYVQMAKLFQLIDHTEK 747
Query: 782 DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
DA+L+++LM HL V+PLT+QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+++PDK
Sbjct: 748 DAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFVLPDK- 806
Query: 842 TYVKETKMAKQRSNHGVEDRNVEEL-TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
+ N ++L N A+ + ++ AYAGGLV+EPK
Sbjct: 807 -----------------KQLNAKDLKKNMFADEYEEGDGKTKGGKRKKAAYAGGLVIEPK 849
Query: 901 KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGL------------------ 938
G YD ILLLDFNSLYPSIIQEYN+CFTTV R P DG
Sbjct: 850 AGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEMKNQYKKGENGEEEVDI 909
Query: 939 ----VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANS 993
+P + VLP +L++LVQ+R+ VK MKT +K+ QL+I+Q+A+KLTANS
Sbjct: 910 EEADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMKTEKDHVKLSQLEIRQKAIKLTANS 969
Query: 994 MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDD 1053
MYGCLGF +SRF+A+ +A LIT+ GRE L T D+ +N L V+YGDTDSIMI++G +
Sbjct: 970 MYGCLGFGSSRFHAQAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQ 1029
Query: 1054 IAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVI-E 1111
+ +A + ++ EVN YKCLEI++DG++K +LLLKKKKYAA+K + F +V+ E
Sbjct: 1030 LQQALEMGKRLKGEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYENFLSPAEVKVVQE 1089
Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
KGLDMVRRDW LSK VG + L QILS + E+VV +++ L + +++ G + L ++
Sbjct: 1090 MKGLDMVRRDWCPLSKRVGRYVLDQILSGKQREEVVLNLNEFLSNIGNELKEGTIKLNEF 1149
Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ-GTSSGSSV 1230
+ITK +TK Y D K QPHV VA RL+ G S + +PY+IC + G ++ SS
Sbjct: 1150 IITKQITKAISDYNDIKGQPHVAVAKRLRDQGKSENQLVNNFIPYVICQQTYGDTTKSST 1209
Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
++ +A HPDE+ GK ID D+Y S Q+ P ++RL IEG E +A CLGLDP K
Sbjct: 1210 ALSDKAYHPDEVISSRGKVTIDSDWYVSTQLLPPITRLIEHIEGIEVEFVAQCLGLDPKK 1269
Query: 1291 FQSKPSETMSSDPSSSLLFAVG-----DEER---YRGCEPLILSCPSCSSTFDCPAVCSS 1342
++ + + +P+ L + ER R L + CP C+ + P +
Sbjct: 1270 YRYHSEKKNTDNPTDDPLIVSNPVLQTETERSLKNRTVAELNIKCPHCAHNYHFPGILV- 1328
Query: 1343 ICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
PS TE L C KC + RI + N++ ++YY G+
Sbjct: 1329 --------PSSNNTELT---GLACVKCNQ-----RIPDAYMLNRLNLFLKQLTALYYLGM 1372
Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
C + C T L L C C G++ +Y+E + L Y L +
Sbjct: 1373 KECKEPQCGMKTNQLLL--------NNKCI-VKGCKGKMNSEYSELRINDTLRYLEGLFN 1423
Query: 1463 TQR 1465
++
Sbjct: 1424 VKK 1426
>sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3
SV=1
Length = 1513
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1194 (36%), Positives = 661/1194 (55%), Gaps = 121/1194 (10%)
Query: 321 NCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHH--SCCVVVKNMQR 378
N QE ++++G+L FY +DAHE+ +G + LY+FGK+ SC + V MQR
Sbjct: 342 NTQEFPLPLNENGTLSFYWIDAHEENNGTD---LYIFGKIYQPQMRQFVSCSMKVNGMQR 398
Query: 379 CVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNY 438
+YA+P K ++R + +K Q A+ ++ + + +S +
Sbjct: 399 ELYALP--------------KMRGKARGALTVEEEKQQVRAVMMELDDIRKKRFPQISKW 444
Query: 439 IVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLV 498
PV R+YAF + I GE+ LKI Y PPLP+ ++G F + G+ S LELF++
Sbjct: 445 RCKPVNRKYAF-EMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFIL 503
Query: 499 KRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAIN 558
KRK++GP W++I + ++ +WC+ I +D+PK++ V+ + E+PP+T +
Sbjct: 504 KRKIRGPCWMTIKNPTKVTDFKK-TWCRQGIVIDNPKNVEVTLEDLNKQELPPLTSLTFS 562
Query: 559 LKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGF 618
KT +Q+ NEI A + C I+T + + FT++RKLDG P F
Sbjct: 563 FKTT-RAQQNTNEI--AMISCL----INTNIAQEGPSQVERTQSFTLLRKLDGKPMPYDF 615
Query: 619 NKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV 678
+++ R N++ +ER ++ + +++ +D D++V HN+ G D+LL R Q
Sbjct: 616 DQKVKQRKE----NIIQKFENERQMIEAFIAKVFIVDPDLVVAHNLCGGMFDLLLARIQY 671
Query: 679 CRVPSSMWSKIGRLKRSEMPKLR---KGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLL 735
+V + WS+IGRLK++++P + G + GS P ++C GRLL DTFL +++L+
Sbjct: 672 LKV--NHWSRIGRLKKTQIPNKKLDFGGSSYGGSQWIPRQVTC--GRLLVDTFLSAKELV 727
Query: 736 REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSV 795
RE SY LT LAK QL KDR++ + ++ T E L LI++ E DA+L+++LM HL++
Sbjct: 728 RETSYDLTYLAKVQLKKDRQDFDDELLPTLYITSERLFSLIDHTEKDAYLTIQLMNHLAI 787
Query: 796 LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
+PLT QLTNI+GNLW ++LQ ARA+R E LLLH F+ KK+I+PD K+ AK
Sbjct: 788 IPLTLQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPD-----KKAPFAKDFKR 842
Query: 856 HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNS 915
+ D EEL + ++ AYAGGLV+EPK G YD ILLLDFNS
Sbjct: 843 NMFADE-FEELKS--------GKGPKKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNS 893
Query: 916 LYPSIIQEYNICFTTVERSP----DGL-----------------------VPHLPSSKTT 948
LYPSIIQEYN+CFTTV R P DG +P +
Sbjct: 894 LYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLPDKNVNVKD 953
Query: 949 GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
VLP +L++LVQ+R+ VK MK +K+ QL+I+Q+A+KLTANSMYGCLGF +SRF+A
Sbjct: 954 AVLPNVLRDLVQKRKAVKEKMKNEKDAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHA 1013
Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQ- 1066
+ +A LIT+ GR+ L T D+ +N L V+YGDTDSIMI++G + + ++ + GK Q
Sbjct: 1014 QAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEM-GKRPQG 1072
Query: 1067 -EVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQ-FKDGMPYEVIERKGLDMVRRDWSL 1124
++ YKCLEI++DG++K +LLLKKKKYAA+K + F V E KGLDMVRRDW
Sbjct: 1073 LKLIALYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCP 1132
Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
LSK VG+F L+QILS + EDVV +++ L + E M++ + L++++ITK LTK Y
Sbjct: 1133 LSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFIITKQLTKAISEY 1192
Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
D K QPHV VA RLK G S + +PY+I + S ++ +A +A HP+E+
Sbjct: 1193 SDIKGQPHVAVAQRLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPALAGKAYHPEEVVS 1252
Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPS 1304
GK ++DI++Y + Q+ P ++RL I+G E +A CLG+DP K++ SE + + +
Sbjct: 1253 SKGKILLDIEWYITMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSSEKKTGETN 1312
Query: 1305 S-------SLLFAVGDEERYRG--CEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPE 1355
+ + + E +G L + CP CS ++ P + +
Sbjct: 1313 NDDGTLIQNPILQTETERSLKGRTIAELTIKCPHCSESYHFPGIFQ-------------D 1359
Query: 1356 TEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
+ N L C KC + I I N+V +++YY+G C + C
Sbjct: 1360 GKNNTLSGLLCIKCTQP-----IPEAYIQNRVTLFLKQLLTLYYQGNKQCQEPAC----G 1410
Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEK 1469
+++ +L+ + + C N C + +YTE L Y L + ++ I++
Sbjct: 1411 AVSRQLLYNNK----CINLA-CKLKNDTRYTEQKTNDTLRYLQGLFNVKKYIQE 1459
Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE 91
I+D + +DEYD + +R+ + FIVDDDG GY D G E
Sbjct: 30 IFDEIDDDEYDKIQDQRKND--DFIVDDDGYGYRDHGGE 66
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/1227 (35%), Positives = 640/1227 (52%), Gaps = 147/1227 (11%)
Query: 278 DVKECKKLNAKISTEKDPLLSATAGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPF 337
DV ++N+KI P S ++ +VS ++ ++DGSL F
Sbjct: 290 DVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVT-----------------EEDGSLFF 332
Query: 338 YILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
+ +D E G+L LFGKV KA + SC + V + R +Y +P
Sbjct: 333 FWMDYTEMY-----GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPR---------- 377
Query: 396 KLEKDAEESRISPMAFRKKLQDVALGLKT---EIANQLLNLNVSNYIVSPVKRRYAFGQA 452
P + +A K E+AN L V + K +YAF
Sbjct: 378 ------------PSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELE 425
Query: 453 EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
++P +Y L++ Y + P LP DL G +F + GT+++ E F++ R+V GP WL I +
Sbjct: 426 DVPRTADY-LEVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKIQQ 484
Query: 513 FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHV-AEVPPVTVTAINLKTVFNKRQDVNE 571
+ A + SWC+ EI SP++I VS + ++ PP+TV ++ +T+ NK Q+ E
Sbjct: 485 -PNFDAVKNASWCRVEIGCSSPQNISVSFEKNEITSKTPPMTVMSLAFRTLINKEQNKQE 543
Query: 572 IVSASVVCCHKAKIDTPMLASEWKKPGMLSH-FTVVRKLDGGIFPMGFNKEATDRNSKAG 630
+V S I+ + A++ M S+ F+++R L IFP GF K A S
Sbjct: 544 VVMISARIFENVDIEKGLPAND-----MPSYSFSLIRPLKQ-IFPNGFEKLARQHKSS-- 595
Query: 631 SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL--DVLLHRAQVCRVPSSMWSK 688
+ CE SE +LLN + ++ D DV GH+ F++ VLL R + ++ + WS
Sbjct: 596 ---IFCERSEVSLLNNFLNKVRTYDPDVYFGHD---FEMCYSVLLSRLKERKIHN--WSS 647
Query: 689 IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREVSYSLTQLAK 747
IGRL+RSE P R+ S IAGRL+CD + R +++ S+SL+++
Sbjct: 648 IGRLRRSEWP-----RSFNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVL 702
Query: 748 TQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNIS 806
+L+ R+++ L+ + T L++ + + E D + + F + +L L++ LTNI+
Sbjct: 703 KELDIKRQDINQEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIA 762
Query: 807 GNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
GN W +TL G RA+R EY+LLH F+ YIVPDK + + + G ED EE
Sbjct: 763 GNSWARTLTGTRAERNEYILLHEFKKNGYIVPDK-----QQSIRRHAEAFGAEDGLQEES 817
Query: 867 TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
+ + Y GGLV EP+KGLY+ IL++DFNSLYPSIIQEYNI
Sbjct: 818 LGKKKD-----------------KYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNI 860
Query: 927 CFTTVERSP-----DGLVPHLPS-SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL 980
CFTTV+RSP D +P PS S G+ P L+ NLV+RRR +K +K S Q+L
Sbjct: 861 CFTTVDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRL 920
Query: 981 --DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVI 1038
DIQQQALKLTANSMYGCLG++ SRFYA+PLA LIT +GRE L +T +L + + L+VI
Sbjct: 921 QWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELA-DQMGLQVI 979
Query: 1039 YGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVK 1098
YGDTDS+M+++ + D A I + ++VN++Y LEID+D +Y+RMLL KKKYAA++
Sbjct: 980 YGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQ 1039
Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
+ G P ++ KGLDM RR++ L+KE FCL QILS E V+E+IH+ LM
Sbjct: 1040 LD-SQGKPN--LDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFS 1096
Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
E MR+G+ K++I L K PE YP+ K P VQVAL+ K G GD +P+II
Sbjct: 1097 EKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALKKKARG--ENVRVGDVIPFII 1154
Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPE 1278
S + A RA P E+ + +ID +YY S QI P + R+ A IEGT+
Sbjct: 1155 A-----GSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRA 1209
Query: 1279 RLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPA 1338
RLA+CLGLD K+ S ET S + D++ + PL+L CPSC++T
Sbjct: 1210 RLAECLGLDARKYYSH--ETSESSAFQRYESTLTDDQCFINVSPLLLKCPSCNAT----- 1262
Query: 1339 VCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
S S + K E + T+ C C E S I Q Q F+++Y
Sbjct: 1263 -------SFSLRSVKSLKETLYANTVEC-DCGYEY-----SDFTIILQFSSQLRDFINLY 1309
Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
Y+G+++CDD +C T +++ G C N C G + +Y + LY Q+ +
Sbjct: 1310 YEGILVCDDSSCGNRTRQMSV-------YGKRCCN-KSCRGSVHFEYNDEQLYNQIKFLL 1361
Query: 1459 HLLDTQRGIEKMEISAKIPLEKELNKI 1485
+ T G + I + K +++I
Sbjct: 1362 KAVQTTTGATRNGIIRCNAINKNISRI 1388
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 11 RRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRR 70
R+R+ G + S R L+ALR+ G+ + Y K +YD V+E+EY +V R+R
Sbjct: 2 RKRNAGIKPSQR---FAELRALRQAGKTRAST--YESKENEELYDNVSEEEYRKIV-RQR 55
Query: 71 EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
+ F+VDD+G GY D G +E W + S DDE+ G S +K++ K E NQ
Sbjct: 56 LDEDDFVVDDNGAGYVDNGYDE-WDQSHY-SDEDDENEKGS-SGRKRKKSKNVLAEPNQQ 112
Query: 131 V 131
+
Sbjct: 113 I 113
>sp|P26019|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster
GN=DNApol-alpha180 PE=1 SV=2
Length = 1488
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 426/1169 (36%), Positives = 627/1169 (53%), Gaps = 115/1169 (9%)
Query: 314 DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM-GTLYLFGKVKAGSTHHSCCVV 372
D+ + + E + + D L F+ +A+E M G ++LFG+ G S C+
Sbjct: 341 DDFEKSVLTTEQDSTISSDQQLRFWYWEAYE--DPVKMPGEVFLFGRTADGK---SVCLR 395
Query: 373 VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
V+N+ R +Y +P F D I K P + + D+ +E+ANQL
Sbjct: 396 VQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVANQLKL 443
Query: 433 LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP--PLPADLKGENFCSLLGTHS 490
+ V+ +A G E+P +Y L+++Y K P L AD K + + G +
Sbjct: 444 EFFRSRKVTKSFAHHAIG-IEVPQSCDY-LEVHYDGKKPLPNLSADKKYNSIAHIFGATT 501
Query: 491 SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
+ALE FL+ RK+KGP WL ++ F P P +SWC E+T+ PK++ + A P
Sbjct: 502 NALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKGKPAPPP 559
Query: 551 PVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
P+T+ ++N++T N + NEI S++ ++ ID P +P H + +
Sbjct: 560 PLTLLSLNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMCALTRPA 614
Query: 611 GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
+P+ N E +K S + SERALL+ + + K+D+D++V + L+
Sbjct: 615 VVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLN 670
Query: 671 VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
V+ + ++P WS++GRL+ S+ FG ++ GR++CD
Sbjct: 671 VITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRS 715
Query: 731 SRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSM 787
+ + +R SY L L K L +R EV D+L+M++ ES+ +LI D +
Sbjct: 716 AEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLL 775
Query: 788 ELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
LM L+++PL Q+TNI GN +TLQG R++R E+LLLHAF K YIVPDK
Sbjct: 776 RLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK------- 828
Query: 848 KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
K +RS G D L+ DA + K+ AYAGGLVLEP +GLY+KY
Sbjct: 829 KPVSKRSGAGDTDAT---LSGADATM----------QTKKKAAYAGGLVLEPMRGLYEKY 875
Query: 908 ILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPSSKTT-GVLPELLKNLVQRRRMV 965
+LL+DFNSLYPSIIQEYNICFTTV++ D +P LP SKT G+LP LK LV+ R+ V
Sbjct: 876 VLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPDSKTEPGILPLQLKRLVESRKEV 935
Query: 966 KTWMKTASGLKIQ---QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
K M A L + Q I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL
Sbjct: 936 KKLM-AAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREIL 994
Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
+T LVQ +N +V+YGDTDS+MI++ I D + I + Q VNK YK LE+D+DG+
Sbjct: 995 TNTQQLVQ-KMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDGV 1053
Query: 1083 YKRMLLLKKKKYAAVKVQFKD--GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
+ +LLLKKKKYAA+K+ KD G E KGLD+VRRDWS L+ VG L ++LSE
Sbjct: 1054 FGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1112
Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK 1200
+ E+ ++++H L K++ + G V L +VITK LT+ P+ Y ++ + PHVQVALR+
Sbjct: 1113 KPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN 1172
Query: 1201 QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG-DGKWMIDIDYYASQ 1259
+ + GD V Y+IC + G++ QRA H DELK D K +D +YY
Sbjct: 1173 RER-NRRYKKGDMVDYVICLD-----GTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1226
Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QSKPSETMSSDPSSSLLFAVGDEE 1315
QIHPVV+R+ +EGT R+A+CLG+DP+KF Q E SLL +
Sbjct: 1227 QIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTL--Q 1284
Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEA 1375
YR CEP C +C + M+ + +P + + +C K E +
Sbjct: 1285 LYRLCEPFRFQCVTCK---------TEQLMASAYRPGPSNSHIAVLQ--QCAKS--ECQT 1331
Query: 1376 GRISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNY 1434
I + NQ++ +V +YK ++CD C + T + +LR + + P
Sbjct: 1332 APIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFNTRTHSLR------KKSHRPLC 1385
Query: 1435 PRC-NGRLVRKYTEADLYKQLTYFCHLLD 1462
+C +G L+R+YTE DLY QL Y + D
Sbjct: 1386 QKCRSGSLLRQYTERDLYNQLCYLRFMFD 1414
>sp|Q54SV8|DPOLA_DICDI DNA polymerase alpha catalytic subunit OS=Dictyostelium discoideum
GN=pola1 PE=3 SV=1
Length = 1509
Score = 583 bits (1504), Expect = e-165, Method: Compositional matrix adjust.
Identities = 408/1183 (34%), Positives = 610/1183 (51%), Gaps = 177/1183 (14%)
Query: 332 DGSLPFYILDAHEQLSGANMGTLYLFGKVK------------AGST-------------- 365
DGSL F++L E G + LFGKVK G+T
Sbjct: 377 DGSLDFFLLTTEED----KQGRIILFGKVKLQASKSNKPGGGGGATKQTSITDEPVTKVP 432
Query: 366 --HHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLK 423
+ SCC++++ M+R V+ +P KL++D E + I Q ++
Sbjct: 433 LKYASCCIIIEKMERNVFFLPRD--------YKLDQDGESTTI---------QVTDTMIE 475
Query: 424 TEIANQLLNLNVSNYIVSPVKRRYAFG----QAEIPAGE-NYVLKINYPFKDPPLPADLK 478
E+ + + +Y + VKR AF P GE +YV K++YP P D+K
Sbjct: 476 AELKQLVDRSKIKDYKLKKVKRTSAFDYSVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIK 535
Query: 479 GENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR 538
G F G SS +ELFL+KRK+ GP+WL++S + Q+ S+ +YE TV S K I+
Sbjct: 536 GSTFRCAYGITSSPVELFLIKRKIMGPTWLTVSGIT-LNFDQKKSFARYEATVKSFKSIK 594
Query: 539 VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
S + PP+TV +I+ K+V + +E+V S V D P +
Sbjct: 595 PSMYKNEPS--PPLTVMSISTKSVM--KGSSHEVVMISSVIHESISADGPT-----ENQD 645
Query: 599 MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
+ + T +R L G +FP F K S NV C +SER LL+ + D DV
Sbjct: 646 SIKYITAIRPLTGQVFPPDFQKPGA---STTKQNVTIC-TSERNLLSFFCETVLNADPDV 701
Query: 659 LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
GHNI G+D++V+L R + +V W+ IGRLKRS +
Sbjct: 702 FAGHNIIGYDIEVILDRLEKLKVME--WAFIGRLKRSSFDRFNH---------------- 743
Query: 719 IAGRLLCDTFLCSRDLL-REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE 777
I+GRL+CD++L ++ L +E +YSL +L+K QL+ ++ E+ + F+T + L IE
Sbjct: 744 ISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPYFETTKKLNIFIE 803
Query: 778 YGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
E D ++ L+F L V PLT+QLTN++GN W K+L+ RA+R+EYLLLH F KKY++
Sbjct: 804 INENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLL 863
Query: 838 PDKFTYVKETKM-----AKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYA 892
PDK Y K + AK + NH AY+
Sbjct: 864 PDKI-YQKSSSSGGGGGAKDKDNHA--------------------------------AYS 890
Query: 893 GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-------DGLVPHLPSS 945
GGLVL+PK YD+Y++LLDFNSLYPSIIQEYN+CFTT+ R + + P PSS
Sbjct: 891 GGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTTINRVKRDDGKWEEAMPP--PSS 948
Query: 946 KTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSR 1004
G+LP++L LV +RR +K M+ I+ Q DIQQQA+KL ANSMYGCLGFS+SR
Sbjct: 949 IEKGILPKVLHGLVSKRREIKKRMEQEKNKIIKAQYDIQQQAVKLIANSMYGCLGFSHSR 1008
Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKV 1064
FYA PLAEL+T++GRE L+ +V N + +VIYGDTDS+MI++G+ +A+ I ++
Sbjct: 1009 FYALPLAELVTRKGRENLQKGASIV-NKMCYDVIYGDTDSLMIYTGVGTFNEAETIGKEI 1067
Query: 1065 IQEVNKKYK--CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIER--KGLDMVRR 1120
+++N +Y+ +EI LDG++KR+LL KKKKYA +K +F+ ER KG+D+VRR
Sbjct: 1068 QKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLK-EFRIDSTTTKCERENKGIDIVRR 1126
Query: 1121 DWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180
D+ L+K++G + L+ IL + I L VQ+ ++ +A+EK++ITKTL+K
Sbjct: 1127 DYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIITKTLSKQ 1186
Query: 1181 PEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPD 1240
PE Y DA QPHVQVAL+++ G G+ VPYII +SS RAR P
Sbjct: 1187 PEEYNDADIQPHVQVALQMRAKGLH--VQPGEQVPYII-THGNSSSDIKEEWHHRARAPS 1243
Query: 1241 ELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSE-TM 1299
+++ +DID+Y SQQI P + R I G P LA LG+ +K+Q +
Sbjct: 1244 DVESIQD---VDIDWYLSQQILPSIQRNTGPI-GMEPHELAQWLGMTGTKYQKQFDHLQQ 1299
Query: 1300 SSDPSSSLLFAVGDEE-RYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEY 1358
S+ + + E+ RY+ C+ CP C + + + K E+ +
Sbjct: 1300 QSNQDFKPRYTLSTEDLRYKQCKSFNFECPYCGQNNEFTGIVK------IDSEGKSESGF 1353
Query: 1359 NFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLN 1418
+ C +C +I +ANQ++ ++ Y + C + C+ S N
Sbjct: 1354 D------CNQC-----HAKIPLKKLANQLQLNIRTYLKQYNDWDLRCTE--CE--KVSKN 1398
Query: 1419 LRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLL 1461
+ E C P+C G++++ T + L+ Q+++F L
Sbjct: 1399 YK-----ETSYRCAR-PQCRGKMIQIMTSSKLFNQISFFSKLF 1435
>sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit OS=Leishmania donovani PE=3
SV=1
Length = 1339
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 384/1035 (37%), Positives = 561/1035 (54%), Gaps = 136/1035 (13%)
Query: 337 FYILDAHEQLSGANM--GTLYLFGKV---KAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQ 390
FY DA EQ ++ G+L+LFGK+ K G T + SCCV V+NM R V+ +P Q
Sbjct: 243 FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGSSQ 302
Query: 391 TDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFG 450
D + K++ D+ N + + V+R YAF
Sbjct: 303 EDVV------------------KEINDICR-----------NQGIEQRRIKFVERYYAFE 333
Query: 451 QAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSI 510
+P + K+ YP + PPL A + ++G SS LELFL+KRK+KGPS+L I
Sbjct: 334 VPGVPHEKTQWAKLRYPGRYPPLNAKGPFRHILIIMGASSSLLELFLIKRKLKGPSFLRI 393
Query: 511 SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVN 570
S + + R+S C E +V+SPK++R + VPP T+ +I + T + + N
Sbjct: 394 SGLVA--SANRISHCALEFSVESPKNLRAEDTK---LPVPPFTLASIQIHTQLDSKGACN 448
Query: 571 EIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630
EI+ ASV I+ + + +L T VR P+ + E+ S G
Sbjct: 449 EILIASVAIYKDVNIENTI---RYIPDNIL---TGVRPASMST-PLPIDLESY--CSAKG 499
Query: 631 SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIG 690
+ ++ERALL+ L +L K+D+D+++GHN GF LD+LL R Q + S WS IG
Sbjct: 500 LPGVRRFANERALLDWLAQQLGKIDADMMIGHNFLGFTLDILLRRYQELSISS--WSTIG 557
Query: 691 RLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ- 749
RL +P+ + T +CI GRL+ D++ SR+ + V+Y L LA
Sbjct: 558 RLDLKRLPRFQGTATNVNQEKE----TCI-GRLVVDSYSLSREHYKTVNYRLLSLADQMQ 612
Query: 750 ---LNKDRKEVGPHDVL---KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ K P + M + +++ A LS ++ HL V+ LT++LT
Sbjct: 613 LQGITKGSNNFEPGTSVLTPAMLSASRDIYDVLLQVCNCAVLSTAVVSHLDVIRLTKRLT 672
Query: 804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
I+GNLW +TL GAR++R+EYLLLH F K+I PD++
Sbjct: 673 TIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDRYV--------------------- 711
Query: 864 EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
NF + GKR Y GG+VL+PK GLY YILLLDFNSLYPS+IQE
Sbjct: 712 -------QNFKRGRDDEEEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQE 764
Query: 924 YNICFTTVERS---------PDGLVPHLPSSKTTG---------VLPELLKNLVQRRRMV 965
+NICFTTV+R P+ L+ S G VLP+++K+LV RR V
Sbjct: 765 FNICFTTVDRESGSEIDVPPPENLI--CASCAAAGLSAPCLHKCVLPKVIKSLVDSRREV 822
Query: 966 KTWMKT---ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
K MK A+ L + L+I+Q+ALKLTANSMYGCLGF SRF+A+PLAEL+T+QGR L
Sbjct: 823 KRLMKIEKDANNLAL--LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLAL 880
Query: 1023 RSTVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLD 1080
+STVDL+ Q N +L VIYGDTDS+MI +GI +DI + + + ++NK+Y+ LEID+D
Sbjct: 881 QSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDID 940
Query: 1081 GLYKRMLLLKKKKYAAVKVQ--FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
G+++ +LLLKKKKYAA+ V +G Y+ E KGLDMVRRDW LSK V D LS++L
Sbjct: 941 GVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKCVCDSVLSRVL 999
Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
+ ED+++ + N + V E +R+G+ L+ +VI+K+LTK PEAY + PH VALR
Sbjct: 1000 NAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFVISKSLTKEPEAY-RGNSFPHATVALR 1058
Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
+KQ GD +PY+IC + ++ +A H +E+++ + + ID ++Y S
Sbjct: 1059 MKQR--KELVRVGDLIPYVIC--------TGDRLSDKAFHVEEVRQ-NSQLQIDSEWYLS 1107
Query: 1259 QQIHPVVSRLCASIEGTSPERLADCLGL---DPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
QI+P V RLC I+G S +L++ +G+ +K + + +ETM+ SSL + EE
Sbjct: 1108 VQIYPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAETMNDFSHSSLFQSRNLEE 1167
Query: 1316 RYRGCEPLILSCPSC 1330
+ L ++C C
Sbjct: 1168 CFPAALSLQVACTHC 1182
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 364/985 (36%), Positives = 535/985 (54%), Gaps = 131/985 (13%)
Query: 337 FYILDAHEQLSGANM-GTLYLFGKV---KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
FY DA EQ GT+ LFGKV + SCCV ++++ R V+ +P
Sbjct: 243 FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLPK------- 295
Query: 393 EIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA 452
+ DAE + EI + + V+R YAF +
Sbjct: 296 ---EGSTDAE-------------------VVQEINAICRGSGIEERRIKFVERYYAFEEP 333
Query: 453 EIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISK 512
+P +N K+ YP + PP P + ++G S LELFL+K+++ GPS+L I
Sbjct: 334 GVPREKNRWAKLVYPGRYPPFPNKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEH 393
Query: 513 FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572
+ A RVS CK E V SPKDI+V +SSK PP TV +I L + NE+
Sbjct: 394 LVT--AMDRVSHCKTEFLVPSPKDIKVYNSSK---PPPPFTVASIQLHAQLDSDGVKNEV 448
Query: 573 VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD-GGIFPMGFNKEATDRNSKAGS 631
++AS+ ID +KP + FT VR+L P+ +
Sbjct: 449 IAASIALYGDVSIDGE------RKPNITECFTGVRQLSPDAPLPLDLETYCLSKRMPGVH 502
Query: 632 NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
+ +ERALL L LD D++VGHNI G+ ++ LL+R Q + WS IGR
Sbjct: 503 RFI----NERALLTWFAETLAALDPDIIVGHNIIGYTVETLLNRYQELNI--VRWSTIGR 556
Query: 692 LKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSL----TQL 745
L P+++ G+ + I +C+ GRL+ DT+L +R+ + +Y L TQ+
Sbjct: 557 LDVRRFPRIQ------GNNFNLAIEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLSTQM 609
Query: 746 AKTQLNKDRKEVGPHDVLKMFQTL---ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
+ +R P + + ++ E+L ++ A LS + L V+PLT++L
Sbjct: 610 EIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRL 669
Query: 803 TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
T ++GNLW +TL GAR++R+EYLLLHAF K++ PDK K+ G ED
Sbjct: 670 TLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDK---------KKRDLKRGRED-- 718
Query: 863 VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
D +GKR Y GG+VLEPK GLY +YILLLDFNSLYPS+IQ
Sbjct: 719 ------------------DDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQ 760
Query: 923 EYNICFTTVERSPDGLVPHLP--------SSKTTG---------VLPELLKNLVQRRRMV 965
E+N+C+TT++R + + +P S + G +LP++++ LV RR +
Sbjct: 761 EFNVCYTTIDRDENTVSAEVPPPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREI 820
Query: 966 KTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
K MK+ + L+I+Q ALKLTANSMYGCLGF SRFYA+PLAEL+T+QGR L++
Sbjct: 821 KRMMKSEKDPGNLAMLEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQN 880
Query: 1025 TVDLV-QNNLNLEVIYGDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
TV+L+ Q + ++ VIYGDTDS+MI +GI DDI K + + ++ +VN++Y+ LE+D+DG+
Sbjct: 881 TVELIPQISPSIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGV 940
Query: 1083 YKRMLLLKKKKYAAVKV--QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE 1140
++ MLLL+KKKYAA+ V +G Y+ E KGLDMVRRDW LS+ V D L +IL+
Sbjct: 941 FRAMLLLRKKKYAALSVVDWQGEGKVYKR-EVKGLDMVRRDWCPLSQHVSDAVLKRILNA 999
Query: 1141 RSCEDVVESIHNSLMKVQEDMRSGQV-ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
ED+++ + + V +D+RSG V LE++VI+K+LTK PE+Y PH VALR+
Sbjct: 1000 EGGEDILDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESY-HGTGYPHAVVALRM 1058
Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
KQ G GD +PY+IC +G I +A H DE+++ DG +D+++Y S
Sbjct: 1059 KQR--KEGVRVGDLIPYVIC--EGDEH-----IDDKAYHIDEVRRSDG-LSVDVEWYLSS 1108
Query: 1260 QIHPVVSRLCASIEGTSPERLADCL 1284
Q++P V RLC I+G PE+L++ +
Sbjct: 1109 QLYPPVMRLCEHIQGFVPEQLSEAM 1133
>sp|P13382|DPOA_YEAST DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL1 PE=1 SV=2
Length = 1468
Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust.
Identities = 365/1058 (34%), Positives = 573/1058 (54%), Gaps = 102/1058 (9%)
Query: 435 VSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-----PLPADLKGENFCSLLGTH 489
+ N P K +Y+F +IP+ +Y LK+ P++ P +P+DL + F + G +
Sbjct: 420 LDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGN 478
Query: 490 SSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
S+ E F+++ ++ GP WL I K + + + S C E++VD P++I +++ +
Sbjct: 479 SNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNITPTTTKT----M 533
Query: 550 PPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKL 609
P + +++++T+ N +++ EIVS ++ +D+P+ E KP L T+VR
Sbjct: 534 PNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPDDLC--TLVRPP 589
Query: 610 DGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDL 669
FP+G A + G L ++E+A+L+ L D DV++GH + L
Sbjct: 590 QSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL 645
Query: 670 DVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASP----GIMSCIAGRLLC 725
DVL HR +P+ +S IGR R P+ FG G S I +GRL+C
Sbjct: 646 DVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLIC 697
Query: 726 DTFLCSRDLLREV-----SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYG 779
D + ++ + + S+ L+++ + K+ K + +Q + S+ ++
Sbjct: 698 D---IANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQEN 754
Query: 780 ETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
T+ +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F +IVPD
Sbjct: 755 ITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPD 814
Query: 840 KFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
K ++ KQR N N DA ++ +K K Y GGLV EP
Sbjct: 815 KEG--NRSRAQKQRQNE----------ENADAPVNS-------KKAK----YQGGLVFEP 851
Query: 900 KKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSSKT-TGVLPELLK 956
+KGL+ Y+L++DFNSLYPSIIQE+NICFTTV+R+ + + +P +P S+ GVLP LL
Sbjct: 852 EKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLA 911
Query: 957 NLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
NLV RRR VK MKT + K Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T
Sbjct: 912 NLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 971
Query: 1016 QQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCL 1075
+GREIL +T L ++ +NL V+YGDTDS+MI +G D+ A A I + VN++Y+ L
Sbjct: 972 NKGREILMNTRQLAES-MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLL 1030
Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
EID+D ++K++LL KKKYAA+ V K+G V+E KGLDM RR++ LS++V L
Sbjct: 1031 EIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVL 1090
Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
+ ILS++ E+ ++ +++ L ++ + + + ++KY I L+K P+AYP KN P VQ
Sbjct: 1091 NTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQ 1150
Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMI 1251
VALR++++G AG + ++I + + + ++ +A+RA +E+ +
Sbjct: 1151 VALRMRKAGRVV--KAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIP 1208
Query: 1252 DIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLL--- 1308
D YY +QI V RL I+ + RL++ LGLD K+ + + + ++L
Sbjct: 1209 DPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLE 1268
Query: 1309 FAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPK 1368
+ D ER++ L LSCPSC F + SS VS + L+C
Sbjct: 1269 TTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS------------YNGLQCKH 1316
Query: 1369 CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERG 1428
C + +P + +Q++ +S+YY G + CDD TC T +++ G
Sbjct: 1317 CEQ-----LFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FG 1364
Query: 1429 TVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG 1466
C N C G + KY++ LY QL YF L D ++
Sbjct: 1365 KRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN 1401
Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 40/251 (15%)
Query: 20 SARAEALERLKALR--RGGRRSGDSVGYNIKLENPIYDTVAEDEYDALVARRREE--ARG 75
S+++E LE+L+ L+ R G D G + IYD + E EY A R+R+E
Sbjct: 2 SSKSEKLEKLRKLQAARNGTSIDDYEGDESDGDR-IYDEIDEKEYRA---RKRQELLHDD 57
Query: 76 FIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPN 135
F+VDDDG+GY D G EEDW SS +D G + K + +K K+E + +
Sbjct: 58 FVVDDDGVGYVDRGVEEDWREVDNSSSDEDT---GNLASKDSKRKKNIKREKDHQI---- 110
Query: 136 PSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLAEFAPDEAD------- 188
M+ Q + L + A KKS+ + + D++L EF E +
Sbjct: 111 ------TDMLRTQHSKSTLLAHA--KKSQKKSIPIDN--FDDILGEFESGEVEKPNILLP 160
Query: 189 ---RERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSD---LINNFVQIQNCDVV 242
RE S +S KS S+ V N + ++ S K D + +++I++ +
Sbjct: 161 SKLRENLNSSPTSEFKS--SIKRVNGNDESSHDAGISKKVKIDPDSSTDKYLEIESSPLK 218
Query: 243 EESKELKWESD 253
+S++L++ +D
Sbjct: 219 LQSRKLRYAND 229
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 292/646 (45%), Gaps = 93/646 (14%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
S+E+ ++ R + + + D DVL+ +N FD L R++ V + GR
Sbjct: 185 STEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFIL----GR--EGSE 238
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
PK+++ F + GR+ D + R + +Y+L + + + +++V
Sbjct: 239 PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKV 290
Query: 758 GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
++ + ++T E L + Y DA ++ EL P+ QL+ + G +LW + +
Sbjct: 291 YAEEIAQAWETGEGLERVARYSMEDAKVTYEL--GKEFFPMEAQLSRLVGQSLWDVS-RS 347
Query: 817 ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
+ VE+ LL + + P+K E ++A++R
Sbjct: 348 STGNLVEWFLLRKAYERNELAPNK---PDERELARRRE---------------------- 382
Query: 877 TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
+YAGG V EP++GL++ I+ LDF SLYPSII +N+ T+ R
Sbjct: 383 -------------SYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428
Query: 934 -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
+P V H G +P LL +L++ R+ VK MK T ++ + LD +Q+A+
Sbjct: 429 EEYDVAPQ--VGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAI 486
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K+ ANS YG G++ +R+Y K AE +T GR+ + +T+ ++ +V+Y DTD
Sbjct: 487 KILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFA 546
Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
D K A + + +N K LE++ +G YKR + KKKYA + + K
Sbjct: 547 TIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDEEDK---- 602
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
I +GL++VRRDWS ++KE L IL E+ V + +V E + +V
Sbjct: 603 ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
EK VI + +T+ + Y PHV VA RL G G + YI+ G
Sbjct: 656 PPEKLVIYEQITRDLKDY--KATGPHVAVAKRLAARG--IKIRPGTVISYIVLKGSGR-- 709
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
I RA DE K+ D +YY Q+ P V R+ +
Sbjct: 710 -----IGDRAIPFDEFDPAKHKY--DAEYYIENQVLPAVERILRAF 748
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 201/835 (24%), Positives = 378/835 (45%), Gaps = 126/835 (15%)
Query: 481 NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIR 538
N +L ++ + + +FL K + G W+ I K ++ S C+ E+TV K++
Sbjct: 208 NVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPV-KNLI 266
Query: 539 VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
V S A + P+ +++++ + +R E + ++ +A+ K G
Sbjct: 267 VHESDGEWAGIAPIRTLSLDIECI-GRRGVFPEAIKDPII----------QIANLVKIEG 315
Query: 599 MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
F + G P+ GSN++ C +E+ LL + + ++D D+
Sbjct: 316 EAEPFVRNCFVLGTCAPV------------VGSNIIQC-VNEKVLLEKWAEFVREVDPDI 362
Query: 659 LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
+ G+NI FDL +L RA+V +P S +GR K KG + + S M
Sbjct: 363 ITGYNILNFDLPYILDRAKVLSLPQV--SHLGRQKE-------KGSVVRDAAISSKQMGS 413
Query: 719 -------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TL 769
I GR++ D + SY+L ++ L++ +++V H+++ Q
Sbjct: 414 RVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV-EHNIIPDLQRGDE 472
Query: 770 ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
++ L +Y DA+L + L+ L + ++ ++G L + ++ ++L
Sbjct: 473 QTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRR 532
Query: 830 FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
+ + +P V E + D G
Sbjct: 533 CKQNNFFLP------------------------VIEANSGD-----------------GE 551
Query: 890 AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPS- 944
Y G V++P +G Y++ I LDF SLYPSI+ +N+C+TT+ +SP G+ PS
Sbjct: 552 GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSG 611
Query: 945 ------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGC 997
SK G+LPE+L++++ R+ K MK K + +Q ALK++ANS+YG
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGF 671
Query: 998 LGFSNSRFYAKPLAELITQQGREILRST---VDLVQNNLNLE--------VIYGDTDSIM 1046
G + + +++ +T GR+++ T V+ + L+ VIYGDTDS+M
Sbjct: 672 TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731
Query: 1047 IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGM 1105
+ G++ +A+A I +EV+K + ++++ + +Y LL+ KK+YA + F
Sbjct: 732 VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAG--LYFTKPD 789
Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
++ ++ KGL+ VRRD L +V CL ++L ER + ++ ++ D+ +
Sbjct: 790 VHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTI----SDLLCNK 845
Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTS 1225
+ + +I+K LTK + Y Q HV++A R+K+ + GD VPY+ +
Sbjct: 846 IDISLLIISKELTKSGDKY--QAKQAHVELAARMKKRDAGSAPRLGDRVPYVF-----VA 898
Query: 1226 SGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
+ +V +RA P + + + +D +Y + Q+ ++R+ I G E++
Sbjct: 899 AAKNVPAYERAEDPTFVLQNN--IPLDTKHYLTNQLAKPLARIFEPILGDRAEKI 951
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 174/650 (26%), Positives = 293/650 (45%), Gaps = 92/650 (14%)
Query: 653 KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS--- 709
++D D+++G+NI FDL L+ RA+V ++ + +GR++ S ++R T F S
Sbjct: 391 EVDPDIIIGYNICKFDLPYLIERAEVLKIVE--FPILGRIRNS---RVRVRDTTFSSRQY 445
Query: 710 GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT- 768
G + GR+ D + + SYSL ++ L + +++V H ++ Q
Sbjct: 446 GMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVH-HSIISDLQNG 504
Query: 769 -LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
E+ L Y DA+L L+ L + ++ ++G L ++ +V LL
Sbjct: 505 NSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLL 564
Query: 828 HAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887
+ K ++P N S D
Sbjct: 565 RKAKQKNLVIP---------------------------------NIKGQASGQD------ 585
Query: 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKT 947
+ G VLE + G Y+K I LDF SLYPSI+ YN+C+ T+ D +LP
Sbjct: 586 --TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESV 643
Query: 948 T---------------GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
G+LPE+L+ L+ R+ K +K A + LD +Q ALK++A
Sbjct: 644 NKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISA 703
Query: 992 NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTD 1043
NS+YG G + + ++ +T GR+++ T LV++ N EVIYGDTD
Sbjct: 704 NSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTD 763
Query: 1044 SIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
S+M+ G+ + A + + ++ + K ++++ + +Y LL+ KK+YA + +
Sbjct: 764 SVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAG--LYWT 821
Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
+ ++ ++ KG++ VRRD LL K + CL +IL +R V+ + N++ D+
Sbjct: 822 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTI----SDLL 877
Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
+V L VITK LTK E Y A HV++A R+++ +T + GD VPY+I
Sbjct: 878 MNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAPTVGDRVPYVII--- 932
Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
++ G R D + D ID YY QI + R+ I
Sbjct: 933 ----KAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPI 978
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 175/646 (27%), Positives = 290/646 (44%), Gaps = 93/646 (14%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
S+E+ ++ R + + + D DVL+ +N FD L R + + ++ GR
Sbjct: 185 STEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTL----GR--DGSE 238
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
PK+++ F + GR+ D + R + +Y+L + + K +++V
Sbjct: 239 PKIQRMGDRFAVE--------VKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290
Query: 758 GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGKTLQG 816
++ + +++ E L + Y DA ++ EL P+ QL+ + G +LW + +
Sbjct: 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYEL--GREFFPMEAQLSRLIGQSLWDVS-RS 347
Query: 817 ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
+ VE+ LL + + P+K E ++A++R
Sbjct: 348 STGNLVEWFLLRKAYKRNELAPNK---PDERELARRRG---------------------- 382
Query: 877 TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--- 933
YAGG V EP++GL+D I+ LDF SLYPSII +N+ T+ R
Sbjct: 383 -------------GYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC 428
Query: 934 -----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQAL 987
+P+ V H G +P LL +L++ R+ +K MK T L+ + LD +Q+A+
Sbjct: 429 KEYDVAPE--VGHKFCKDFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLDYRQRAI 486
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K+ ANS YG G++ +R+Y K AE +T GRE + + ++ +V+Y DTD +
Sbjct: 487 KILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHA 546
Query: 1048 HSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMP 1106
D K A + ++ +N K LE++ +G Y R + KKKYA + + K
Sbjct: 547 TIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGK---- 602
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
I +GL++VRRDWS ++KE L IL E+ V + +V E + +V
Sbjct: 603 ---ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTEKLSKYEV 655
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
EK VI + +T+ Y PHV VA RL G G + YI+ G
Sbjct: 656 PPEKLVIHEQITRDLRDY--KATGPHVAVAKRLAARG--VKIRPGTVISYIVLKGSGR-- 709
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
I RA DE ++ D +YY Q+ P V R+ +
Sbjct: 710 -----IGDRAIPADEFDPTKHRY--DAEYYIENQVLPAVERILKAF 748
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 202/782 (25%), Positives = 339/782 (43%), Gaps = 127/782 (16%)
Query: 629 AGSNVLCCESSERALLN-RLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS 687
G +V+ E+ LL R +I +D D+++G+NI FDL L+ RA + +
Sbjct: 360 VGVDVMSFETEREVLLAWRDLIR--DVDPDIIIGYNICKFDLPYLIERAATLGIEE--FP 415
Query: 688 KIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQ 744
+GR+K S ++R + F S G + I GR D + SYSL
Sbjct: 416 LLGRVKNS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNS 472
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L++ +++V H ++ Q E+ L Y DA+L L+ L + ++
Sbjct: 473 VSAHFLSEQKEDVH-HSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 531
Query: 803 TNISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVED 860
++G L AR Q ++ L LL + K ++P+ AKQ
Sbjct: 532 ARVTGVPISFLL--ARGQSIKVLSQLLRKGKQKNLVLPN----------AKQ-------- 571
Query: 861 RNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
G Y G VLE + G Y+K I LDF SLYPSI
Sbjct: 572 -----------------------SGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSI 608
Query: 921 IQEYNICFTTVERSPDGLVPHLPSSKTT---------------GVLPELLKNLVQRRRMV 965
+ YN+C+ T+ D +LP T G+LPE+L+ L+ R+
Sbjct: 609 MMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRA 668
Query: 966 KTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS 1024
K +K A L+ LD +Q ALK++ANS+YG G + + ++ +T GR+++
Sbjct: 669 KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQ 728
Query: 1025 TVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCL 1075
T LV++ N EVIYGDTDS+M+ G+ D+ A + + + ++ + K +
Sbjct: 729 TKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPI 788
Query: 1076 EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLS 1135
+++ + +Y LL+ KK+YA + + + ++ ++ KG++ VRRD LL K + L+
Sbjct: 789 KLEFEKVYFPYLLINKKRYAG--LLWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLN 846
Query: 1136 QILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV 1195
+IL +R E++ ++ D+ ++ L VITK LTK + Y H ++
Sbjct: 847 KILIDRDVPGAAENVKKTI----SDLLMNRIDLSLLVITKGLTKTGDDY--EVKSAHGEL 900
Query: 1196 ALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDY 1255
A R+++ +T + GD VPY+I ++ G R D + ID +Y
Sbjct: 901 AERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLQNNIPIDPNY 953
Query: 1256 YASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEE 1315
Y QI + R+ + + + L L S +S T PS+S + ++
Sbjct: 954 YLENQISKPLLRIFEPVLKNASKEL-----LHGSHTRSISITT----PSNSGIMKFAKKQ 1004
Query: 1316 RYRGCEPLILSCPSCSSTFDCPAVCSS--------ICMSVSEKPSKPETEYNFWRTLRCP 1367
LSC C +C+S C +VS+ E W +C
Sbjct: 1005 ---------LSCVGCKVPISNGTLCASCKGREAELYCKNVSQVAELEEVFGRLWT--QCQ 1053
Query: 1368 KC 1369
+C
Sbjct: 1054 EC 1055
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 180/676 (26%), Positives = 307/676 (45%), Gaps = 97/676 (14%)
Query: 629 AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
G +V+ E+ ER +L + ++D D+++G+NI FDL L+ RA ++ + +
Sbjct: 325 VGVDVMPFET-EREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERALNLKI--AEFPI 381
Query: 689 IGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQ 744
+GR++ S ++R T F S G + GR+ D + RD ++S
Sbjct: 382 LGRIRNS---RVRVKDTTFSSRQYGTRESKEVAVEGRVTFDLLQVMQRDY--KLSSYSLN 436
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
+ ++KE H ++ Q E+ L Y DA+L L+ L + ++
Sbjct: 437 SVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEM 496
Query: 803 TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
++G L ++ +V LL R K ++P+ AKQ
Sbjct: 497 ARVTGVPISFLLSRGQSIKVLSQLLRRARQKNLVIPN----------AKQ---------- 536
Query: 863 VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQ 922
G + G VLE + G Y+K I LDF SLYPSI+
Sbjct: 537 ---------------------AGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMM 575
Query: 923 EYNICFTT----------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
YN+C+ T V R+P G + S+ G+LPE+L+ L+ R+ K
Sbjct: 576 AYNLCYCTLVIPEDARKLNIPPESVNRTPSGET-FVKSNLQKGILPEILEELLTARKRAK 634
Query: 967 TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
+K A L+ LD +Q ALK++ANS+YG G + + ++ +T GR+++ T
Sbjct: 635 ADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHT 694
Query: 1026 VDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLE 1076
LV++ N EVIYGDTDS+M+ G+ + +A + + + ++ + K ++
Sbjct: 695 KKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIK 754
Query: 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQ 1136
++ + +Y LL+ KK+YA + D ++ ++ KG++ VRRD LL K + + CL +
Sbjct: 755 LEFEKVYYPYLLISKKRYAGLFWTKPDN--FDKMDTKGIETVRRDNCLLVKNLVNDCLHK 812
Query: 1137 ILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVA 1196
IL +R V+ + N++ D+ ++ L VITK LTK + Y HV++A
Sbjct: 813 ILIDRDIPGAVQYVKNAI----SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELA 866
Query: 1197 LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256
R+++ +T + GD VPY+I ++ G R D + + ID YY
Sbjct: 867 ERMRKRDAATAPNVGDRVPYVII-------KAAKGAKAYERSEDPIYVLENNIPIDPHYY 919
Query: 1257 ASQQIHPVVSRLCASI 1272
QI + R+ I
Sbjct: 920 LENQISKPILRIFEPI 935
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 177/655 (27%), Positives = 304/655 (46%), Gaps = 95/655 (14%)
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
+ +D DV+ G+NI FDL L+ RAQ +V ++ L+ + + R +
Sbjct: 381 ILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 437
Query: 710 GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
G + + GR+ D + LLRE SY+L ++ L + +++V H ++
Sbjct: 438 GRRDSKVVSMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 493
Query: 767 QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
Q ++ L Y DA+L + L+ L VL ++ ++G G L +R Q+V+
Sbjct: 494 QNGNEQTRRRLAVYCLRDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--SRGQQVKV 551
Query: 825 LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
+ +++ +Q G+ V+ ED
Sbjct: 552 V---------------------SQLLRQAMRQGLLMPVVKTEGGED-------------- 576
Query: 885 GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R P
Sbjct: 577 ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 630
Query: 936 DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
D + + SS G+LP++L+NL+ R+ K + + L+ Q LD +Q ALK
Sbjct: 631 DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 690
Query: 989 LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYG 1040
++ANS+YG G + +++ +T GR+++ T LV++ N N +V+YG
Sbjct: 691 VSANSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYG 750
Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
DTDS+M G+ +A+A ++ + V+ + + ++ + +Y LL+ KK+YA +
Sbjct: 751 DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 810
Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
+ ++ ++ KGL+ VRRD L + L +IL +R + V + V
Sbjct: 811 SSQPDT-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 865
Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
D+ ++ + + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 866 DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 923
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 924 -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLGQQLAKPLLRIFEPILG 971
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 303/659 (45%), Gaps = 109/659 (16%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
+D DV+ G+NI FDL L+ RAQ +VP + +GR ++ S + GR
Sbjct: 387 MDPDVITGYNIQNFDLPYLISRAQTLKVPG--FPLLGRVIGLRSNIRESSFQSRQTGRR- 443
Query: 707 FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
++S + GR+ D + LLRE SY+L ++ L + +++V H ++
Sbjct: 444 -----DSKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 493
Query: 764 KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
Q ++ L Y DA+L + L+ L VL ++ ++G G L +R Q+
Sbjct: 494 TDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLL--SRGQQ 551
Query: 822 VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
V+ + +++ +Q G+ V+ ED
Sbjct: 552 VKVV---------------------SQLLRQAMRQGLLMPVVKTEGGED----------- 579
Query: 882 HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER-------- 933
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R
Sbjct: 580 ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLG 630
Query: 934 --------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
+P G + +S G+LP++L+NL+ R+ K + K L+ Q LD +Q
Sbjct: 631 LTEDQFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 689
Query: 985 QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
ALK++ANS+YG G R +++ +T GR+++ T LV+ +E
Sbjct: 690 LALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAK 749
Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
V+YGDTDS+M G+ +A+A A+ + V+ + + ++ + +Y LL+ KK+YA
Sbjct: 750 VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 809
Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
+ + ++ ++ KGL+ VRRD L + L ++L +R V +
Sbjct: 810 GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQD--- 865
Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
V D+ ++ + + VITK LT+ Y A Q HV++A R+++ + S GD VP
Sbjct: 866 -VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 922
Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
Y+I ++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 923 YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 974
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 176/655 (26%), Positives = 303/655 (46%), Gaps = 95/655 (14%)
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
+ +D DV+ G+NI FDL L+ RAQ +V ++ L+ + + R +
Sbjct: 383 ILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGLRSNIRDSSFQSRQV--- 439
Query: 710 GASPGIMSCIAGRLLCDTFLCSRDLLRE---VSYSLTQLAKTQLNKDRKEVGPHDVLKMF 766
G + + GR+ D + LLRE SY+L ++ L + +++V H ++
Sbjct: 440 GRRDSKVISMVGRVQMDML---QVLLREHKLRSYTLNAVSFHFLGEQKEDVQ-HSIITDL 495
Query: 767 QT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEY 824
Q ++ L Y DA+L + L+ L VL ++ ++G G L R Q+V+
Sbjct: 496 QNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLL--TRGQQVKV 553
Query: 825 LLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRK 884
+ +++ +Q G+ V+ +ED
Sbjct: 554 V---------------------SQLLRQAMRQGLLMPVVKTEGSED-------------- 578
Query: 885 GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS---------P 935
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R P
Sbjct: 579 ------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKP 632
Query: 936 DGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
D + + SS G+LP++L+NL+ R+ K + + L+ Q LD +Q ALK
Sbjct: 633 DEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALK 692
Query: 989 LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYG 1040
++ANS+YG G + +++ +T GR+++ T LV++ +E V+YG
Sbjct: 693 VSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYG 752
Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKV 1099
DTDS+M G+ +A+A ++ + V+ + + ++ + +Y LL+ KK+YA +
Sbjct: 753 DTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLF 812
Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
+ ++ ++ KGL+ VRRD L + L +IL +R + V + V
Sbjct: 813 SSRSDA-HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VIS 867
Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
D+ ++ + + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 868 DLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII 925
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 926 -------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 177/666 (26%), Positives = 304/666 (45%), Gaps = 95/666 (14%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMP 698
E LL + +D DV+ G+NI FDL L+ RAQ +V ++ L+ +
Sbjct: 370 EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGLRSNIRD 429
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRK 755
+ R + G + + GR+ D + LLRE SY+L ++ L + ++
Sbjct: 430 SSFQSRQV---GRRDSKVVSMVGRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKE 483
Query: 756 EVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
+V H ++ Q ++ L Y DA+L + L+ L VL ++ ++G G
Sbjct: 484 DVQ-HSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYL 542
Query: 814 LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
L +R Q+V+ + +++ +Q G+ V+ ED
Sbjct: 543 L--SRGQQVKVV---------------------SQLLRQAMREGLLMPVVKTEGGED--- 576
Query: 874 DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R
Sbjct: 577 -----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619
Query: 934 S---------PDGLVP------HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKI 977
PD + + +S G+LP++L+NL+ R+ K + + L+
Sbjct: 620 PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679
Query: 978 QQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE- 1036
Q LD +Q ALK++ NS+YG G + +++ +T GR+++ T LV+ LE
Sbjct: 680 QVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739
Query: 1037 -------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLL 1088
V+YGDTDS+M G+ +A+A ++ + V+ + + ++ + +Y LL
Sbjct: 740 GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799
Query: 1089 LKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
+ KK+YA + + ++ ++ KGL+ VRRD L + L +IL +R + V
Sbjct: 800 ISKKRYAGLLFSSRSDA-HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA 858
Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
+ V D+ ++ + + VITK LT+ Y A Q HV++A R+++ +
Sbjct: 859 HAKD----VISDLLCNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAP 912
Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
+ GD VPY+I G++ G+A + D L + ID YY QQ+ + R+
Sbjct: 913 NLGDRVPYVII-------GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRI 965
Query: 1269 CASIEG 1274
I G
Sbjct: 966 FEPILG 971
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 183/687 (26%), Positives = 317/687 (46%), Gaps = 104/687 (15%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GS VLC E +L++ + ++D D+L G+NI+ FD LL+RA +V + + +
Sbjct: 349 GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRN--FEYL 405
Query: 690 GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
GR+K RS + + G + + GR+ D F+ RD LR SY+L +
Sbjct: 406 GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L + +++V H ++ Q ++ L Y DA+L + L+ L + ++
Sbjct: 462 SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520
Query: 804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
++G L + +V LL + K +I+P ++ G +++
Sbjct: 521 RVTGVPLESLLTRGQQIKVLSQLLRKAKTKGFIMPS-------------YTSQGSDEQ-- 565
Query: 864 EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
Y G V+EPK+G Y I LDF SLYPSI+
Sbjct: 566 ---------------------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMA 598
Query: 924 YNICFTT--------------------VERSPDGLVPHLPSSKTTGVLPELLKNLVQRRR 963
+N+C+TT VER+P + S G+LPE+L++L+ R+
Sbjct: 599 HNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARK 657
Query: 964 MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
K +K + K + LD +Q ALK++ANS+YG G + ++ +T GR ++
Sbjct: 658 RAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMI 717
Query: 1023 RSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-K 1073
T + V+++ N VIYGDTDS+M++ G+ + ++ + + + V+ K+
Sbjct: 718 EMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKFVH 777
Query: 1074 CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFC 1133
++++ + +Y LL+ KK+YA + D Y+ ++ KG++ VRRD S L + + C
Sbjct: 778 PIKLEFEKVYYPYLLINKKRYAGLYFTRPDT--YDKMDCKGIETVRRDNSPLVANLMNSC 835
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHV 1193
L ++L ER + V + +V D+ ++ + VITK L K A Q HV
Sbjct: 836 LQKLLIERDPDGAVAYVK----QVIADLLCNRIDISHLVITKELAKTDY----AAKQAHV 887
Query: 1194 QVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDI 1253
++A ++K+ T GD VPY+IC ++ + Q+A P L + ID
Sbjct: 888 ELAAKMKKRDPGTAPKLGDRVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDA 940
Query: 1254 DYYASQQIHPVVSRLCASIEGTSPERL 1280
YY QQ+ + R+ I G + E +
Sbjct: 941 TYYLEQQLSKPLLRIFEPILGDNAESI 967
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 179/652 (27%), Positives = 294/652 (45%), Gaps = 110/652 (16%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
SSER ++ R + + + D D++V +N FD L RA+ + + IGR
Sbjct: 185 SSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT----IGR--DGSE 238
Query: 698 PKLRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
PK+++ G M+ + GR+ D + + +Y+L + + K ++
Sbjct: 239 PKMQR----------IGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKE 288
Query: 756 EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTL 814
+V ++ K +++ E+L + +Y DA + EL LP+ QL+ + G LW +
Sbjct: 289 KVYADEIAKAWESGENLERVAKYSMEDAKATYEL--GKEFLPMEIQLSRLVGQPLWDVS- 345
Query: 815 QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
+ + VE+ LL + + P
Sbjct: 346 RSSTGNLVEWFLLRKAYERNEVAP------------------------------------ 369
Query: 875 NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
N S ++++ R +Y GG V EP+KGL++ I+ LDF +LYPSII +N+ S
Sbjct: 370 NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNV-------S 420
Query: 935 PDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
PD L V H G +P LL +L++ R+ +KT MK T ++ L
Sbjct: 421 PDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKMKETQDPIEKILL 480
Query: 981 DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
D +Q+A+KL ANS YG G++ +R+Y K AE +T GR+ + ++ +V+Y
Sbjct: 481 DYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYI 540
Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
DTD + I G + K KA+ + ++ +N K LE++ +G YKR + KK+YA +
Sbjct: 541 DTDGLYATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVI 598
Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
+ K VI R GL++VRRDWS ++KE L IL E+ V + + K
Sbjct: 599 DEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK- 650
Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
+ + ++ EK I + +T+P Y PHV VA +L G G + YI
Sbjct: 651 ---LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGMVIGYI 703
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
+ G I+ RA +E K+ D +YY Q+ P V R+
Sbjct: 704 VLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 179/652 (27%), Positives = 294/652 (45%), Gaps = 110/652 (16%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
SSER ++ R + + + D D++V +N FD L RA+ + + IGR
Sbjct: 185 SSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT----IGR--DGSE 238
Query: 698 PKLRKGRTIFGSGASPGIMSCI--AGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
PK+++ G M+ + GR+ D + + +Y+L + + K ++
Sbjct: 239 PKMQR----------IGDMTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKE 288
Query: 756 EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-LWGKTL 814
+V ++ K +++ E+L + +Y DA + EL LP+ QL+ + G LW +
Sbjct: 289 KVYADEIAKAWESGENLERVAKYSMEDAKATYEL--GKEFLPMEIQLSRLVGQPLWDVS- 345
Query: 815 QGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFD 874
+ + VE+ LL + + P
Sbjct: 346 RSSTGNLVEWFLLRKAYERNEVAP------------------------------------ 369
Query: 875 NDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS 934
N S ++++ R +Y GG V EP+KGL++ I+ LDF +LYPSII +N+ S
Sbjct: 370 NKPSEEEYQRRLR-ESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNV-------S 420
Query: 935 PDGL-------------VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
PD L V H G +P LL +L++ R+ +KT MK T ++ L
Sbjct: 421 PDTLNLEGCKNYDIAPQVGHKFCKDIPGFIPSLLGHLLEERQKIKTKMKETQDPIEKILL 480
Query: 981 DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
D +Q+A+KL ANS YG G++ +R+Y K AE +T GR+ + ++ +V+Y
Sbjct: 481 DYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYI 540
Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
DTD + I G + K KA+ + ++ +N K LE++ +G YKR + KK+YA +
Sbjct: 541 DTDGLYATIPGGESEEIKKKAL--EFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVI 598
Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
+ K VI R GL++VRRDWS ++KE L IL E+ V + + K
Sbjct: 599 DEEGK------VITR-GLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK- 650
Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
+ + ++ EK I + +T+P Y PHV VA +L G G + YI
Sbjct: 651 ---LANYEIPPEKLAIYEQITRPLHEYKAI--GPHVAVAKKLAAKG--VKIKPGMVIGYI 703
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLC 1269
+ G I+ RA +E K+ D +YY Q+ P V R+
Sbjct: 704 VLRGDGP-------ISNRAILAEEYDPKKHKY--DAEYYIENQVLPAVLRIL 746
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 178/659 (27%), Positives = 304/659 (46%), Gaps = 109/659 (16%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR-------LKRSEMPKLRKGRTI 706
+D DV+ G+NI FDL L+ RAQ +V + +GR ++ S + GR
Sbjct: 388 MDPDVITGYNIQNFDLPYLISRAQTLKV--QTFPFLGRVAGLCSNIRDSSFQSKQTGRR- 444
Query: 707 FGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVL 763
++S + GR+ D + LLRE SY+L ++ L + +++V H ++
Sbjct: 445 -----DTKVVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDVQ-HSII 494
Query: 764 KMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQR 821
Q ++ L Y DA+L + L+ L VL ++ ++G L +R Q+
Sbjct: 495 TDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLL--SRGQQ 552
Query: 822 VEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
V+ + +++ +Q + G+ V+ ED
Sbjct: 553 VKVV---------------------SQLLRQAMHEGLLMPVVKSEGGED----------- 580
Query: 882 HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE--------- 932
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+
Sbjct: 581 ---------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLG 631
Query: 933 -------RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQ 984
R+P G + +S G+LP++L+NL+ R+ K + K L+ Q LD +Q
Sbjct: 632 LTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQ 690
Query: 985 QALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE-------- 1036
ALK++ANS+YG G + +++ +T GR+++ T LV++ +E
Sbjct: 691 LALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAK 750
Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
V+YGDTDS+M G+ +A+A A+ + V+ + + ++ + +Y LL+ KK+YA
Sbjct: 751 VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 810
Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
+ + ++ ++ KGL+ VRRD L + L ++L +R E V +
Sbjct: 811 GLLFSSRPDA-HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD--- 866
Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVP 1215
V D+ ++ + + VITK LT+ Y A Q HV++A R+++ + S GD VP
Sbjct: 867 -VISDLLCNRIDISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVP 923
Query: 1216 YIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
Y+I ++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 924 YVII-------SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
>sp|P0CL76|DPOL_PYRAY DNA polymerase 1 OS=Pyrococcus abyssi GN=polI PE=1 SV=1
Length = 771
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 181/650 (27%), Positives = 296/650 (45%), Gaps = 101/650 (15%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
SSER ++ RL+ + + D DV++ +N FD LL RA+ + + GR SE
Sbjct: 185 SSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLPL----GR-DNSE- 238
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
PK+++ G S + I GR+ D F R + +Y+L + + K +++V
Sbjct: 239 PKMQR------MGDSLAVE--IKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 290
Query: 758 GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
H++ + ++T + L + +Y DA ++ EL P+ QL + G + +
Sbjct: 291 YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWDVSRSS 348
Query: 818 RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
VE+ LL + + P+K
Sbjct: 349 TGNLVEWFLLRKAYERNELAPNK------------------------------------- 371
Query: 878 SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
+ + +Y GG V EP+KGL++ I+ LDF SLYPSII +N+ T+ R
Sbjct: 372 PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 430
Query: 934 ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
+P V H G +P LL NL++ R+ +K MK + ++ + LD +Q+A+K
Sbjct: 431 EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 488
Query: 989 LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
+ ANS YG G++ +R+Y K AE +T GR+ +DLV+ L +V+Y DTD +
Sbjct: 489 ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESSGFKVLYIDTDGL 544
Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
I + K KA+ K ++ +N K LE++ +G Y R + KKKYA + + K
Sbjct: 545 YATIPGAKPNEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 602
Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
I +GL++VRRDWS ++KE L IL + ++ V+ + +V E +
Sbjct: 603 -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 651
Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
++ EK VI + +T+P Y PHV VA RL G G + YI+
Sbjct: 652 KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 707
Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
G S ++ I +E K+ D +YY Q+ P V R+ +
Sbjct: 708 GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 748
>sp|P0CL77|DPOL_PYRAB DNA polymerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=polI
PE=1 SV=1
Length = 771
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 181/650 (27%), Positives = 296/650 (45%), Gaps = 101/650 (15%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
SSER ++ RL+ + + D DV++ +N FD LL RA+ + + GR SE
Sbjct: 185 SSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLPL----GR-DNSE- 238
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
PK+++ G S + I GR+ D F R + +Y+L + + K +++V
Sbjct: 239 PKMQR------MGDSLAVE--IKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKV 290
Query: 758 GPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
H++ + ++T + L + +Y DA ++ EL P+ QL + G + +
Sbjct: 291 YAHEIAEAWETGKGLERVAKYSMEDAKVTFEL--GKEFFPMEAQLARLVGQPVWDVSRSS 348
Query: 818 RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
VE+ LL + + P+K
Sbjct: 349 TGNLVEWFLLRKAYERNELAPNK------------------------------------- 371
Query: 878 SHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---- 933
+ + +Y GG V EP+KGL++ I+ LDF SLYPSII +N+ T+ R
Sbjct: 372 PDEREYERRLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDTLNRENCK 430
Query: 934 ----SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALK 988
+P V H G +P LL NL++ R+ +K MK + ++ + LD +Q+A+K
Sbjct: 431 EYDVAPQ--VGHRFCKDFPGFIPSLLGNLLEERQKIKKRMKESKDPVEKKLLDYRQRAIK 488
Query: 989 LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL---NLEVIYGDTDSI 1045
+ ANS YG G++ +R+Y K AE +T GR+ +DLV+ L +V+Y DTD +
Sbjct: 489 ILANSYYGYYGYAKARWYCKECAESVTAWGRQ----YIDLVRRELESRGFKVLYIDTDGL 544
Query: 1046 M--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
I + K KA+ K ++ +N K LE++ +G Y R + KKKYA + + K
Sbjct: 545 YATIPGAKHEEIKEKAL--KFVEYINSKLPGLLELEYEGFYARGFFVTKKKYALIDEEGK 602
Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
I +GL++VRRDWS ++KE L IL + ++ V+ + +V E +
Sbjct: 603 -------IVTRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVK----EVTEKLS 651
Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
++ EK VI + +T+P Y PHV VA RL G G + YI+
Sbjct: 652 KYEIPPEKLVIYEQITRPLSEYKAI--GPHVAVAKRLAAKG--VKVKPGMVIGYIVLRGD 707
Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
G S ++ I +E K+ D +YY Q+ P V R+ +
Sbjct: 708 GPISKRAIAI-------EEFDPKKHKY--DAEYYIENQVLPAVERILRAF 748
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 297/655 (45%), Gaps = 110/655 (16%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
SSER ++ R + + + D DV++ +N FDL L+ RA+ K+G
Sbjct: 185 SSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAE----------KLG------- 227
Query: 698 PKLRKGRTIFGSGASP-----GIMSC--IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
KL GR G+ P G M+ I GR+ D + R + +Y+L + +
Sbjct: 228 IKLPLGR----DGSEPKMQRLGDMTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIF 283
Query: 751 NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN-L 809
K +++V H++ + ++T + L + +Y DA ++ EL P+ QL+ + G L
Sbjct: 284 GKPKEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTYEL--GREFFPMEAQLSRLVGQPL 341
Query: 810 WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
W + + + VE+ LL + + P+K
Sbjct: 342 WDVS-RSSTGNLVEWYLLRKAYERNELAPNK----------------------------- 371
Query: 870 DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
+ + +YAGG V EP+KGL++ ++ LDF SLYPSII +N+
Sbjct: 372 --------PDEREYERRLRESYAGGYVKEPEKGLWEG-LVSLDFRSLYPSIIITHNVSPD 422
Query: 930 TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQL 980
T+ R +P+ V H G +P LLK L+ R+ +K MK + ++ + L
Sbjct: 423 TLNREGCREYDVAPE--VKHKFCKDFPGFIPSLLKRLLDERQEIKRKMKASKDPIEKKML 480
Query: 981 DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
D +Q+A+K+ ANS YG G++ +R+Y K AE +T GRE + ++ +V+Y
Sbjct: 481 DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYI 540
Query: 1041 DTDSIM--IHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAV 1097
DTD + I + K KA+ + ++ +N K LE++ +G Y R + KKKYA +
Sbjct: 541 DTDGLYATIPGAKPEEIKRKAL--EFVEYINAKLPGLLELEYEGFYVRGFFVTKKKYALI 598
Query: 1098 KVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV 1157
+ K I +GL++VRRDWS ++KE L IL + E+ V+ + V
Sbjct: 599 DEEGK-------IITRGLEIVRRDWSEIAKETQAKVLEAILKHGNVEEAVKIVKE----V 647
Query: 1158 QEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYI 1217
E + ++ EK VI + +T+P Y PHV VA RL G G + YI
Sbjct: 648 TEKLSKYEIPPEKLVIYEQITRPLHEYKAI--GPHVAVAKRLAARG--VKVRPGMVIGYI 703
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ G I++RA +E K+ D +YY Q+ P V R+ +
Sbjct: 704 VLRGDGP-------ISKRAILAEEFDPRKHKY--DAEYYIENQVLPAVLRILEAF 749
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 174/656 (26%), Positives = 293/656 (44%), Gaps = 104/656 (15%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---G 710
+D DVL+G+NI FD+ LL RA+ R+ + + +GR+ + K T F S G
Sbjct: 372 VDPDVLIGYNICNFDIPYLLDRAKSLRIHN--FPLLGRIH--NFFSVAK-ETTFSSKAYG 426
Query: 711 ASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--T 768
+ I GRL D + + SYSL + L + +++V + ++ Q T
Sbjct: 427 TRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVH-YSIITDLQNGT 485
Query: 769 LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
+S L Y DA+L LM L ++ ++G + L AR Q+++ +
Sbjct: 486 ADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL--ARGQQIKVI--- 540
Query: 829 AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRG 888
+++ ++ H + N+ R
Sbjct: 541 ------------------SQLFRKALQHDLVVPNI-------------------RVNGTD 563
Query: 889 PAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-------------- 934
Y G V+EP KG YD I LDF+SLYPSI+Q +N+C+TT+ S
Sbjct: 564 EQYEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDY 623
Query: 935 ---PDG---LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
P+G + PH+ G+LP +L +L+ R+ K +K + K LD +Q AL
Sbjct: 624 SVTPNGDYFVKPHV----RKGLLPIILADLLNARKKAKADLKKETDPFKKAVLDGRQLAL 679
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIY 1039
K++ANS+YG G +N R ++ +T GR+++ T D+V+ +E VIY
Sbjct: 680 KVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIY 739
Query: 1040 GDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVK 1098
GDTDS+M+ G+ + +A + + V+ ++ ++++ + +Y LL+ KK+YA +
Sbjct: 740 GDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLF 799
Query: 1099 VQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ 1158
D Y+ ++ KG++ VRRD L V D L ++L ++ VE KV
Sbjct: 800 WTRTD--TYDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQD----VEGAQLFTKKVI 853
Query: 1159 EDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
D+ ++ + + VITK L+K A HV++A R+++ + + GD V Y+I
Sbjct: 854 SDLLQNKIDMSQLVITKALSKTDY----AAKMAHVELAERMRKRDAGSAPAIGDRVAYVI 909
Query: 1219 CCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
+ G R D + + ID YY Q+ + R+ I G
Sbjct: 910 I-------KGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILG 958
>sp|Q7SIG7|DPOL_DESST DNA polymerase OS=Desulfurococcus sp. (strain Tok) GN=pol PE=1 SV=1
Length = 773
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 170/653 (26%), Positives = 287/653 (43%), Gaps = 107/653 (16%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
S+E+ ++ R + + + D DVL+ +N FD L R+++ V
Sbjct: 185 STEKEMIKRFLKVIQEKDPDVLITYNGDNFDFAYLKKRSEMLGV---------------- 228
Query: 698 PKLRKGRTIFGSGASPGIMSC-------IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL 750
K GR G+ P I + GR+ D + R + +Y+L + +
Sbjct: 229 -KFILGR----DGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLETVYEPVF 283
Query: 751 NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NL 809
+ +++V ++ + +++ E L + Y DA + EL P+ QL+ + G +L
Sbjct: 284 GQPKEKVYAEEIARAWESGEGLERVARYSMEDAKATYEL--GKEFFPMEAQLSRLVGQSL 341
Query: 810 WGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNE 869
W + + + VE+ LL + + P+K
Sbjct: 342 WDVS-RSSTGNLVEWFLLRKAYERNDVAPNK----------------------------- 371
Query: 870 DANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT 929
++ +R +YAGG V EP+KGL++ I+ LD+ SLYPSII +N+
Sbjct: 372 ---------PDERELARRTESYAGGYVKEPEKGLWEN-IVYLDYKSLYPSIIITHNVSPD 421
Query: 930 TVER--------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQL 980
T+ R +P V H G +P LL +L++ R+ VK MK T ++ + L
Sbjct: 422 TLNREGCREYDVAPQ--VGHRFCKDFPGFIPSLLGDLLEERQKVKKKMKATVDPIERKLL 479
Query: 981 DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040
D +Q+A+K+ ANS YG ++N+R+Y + AE +T GR+ + +T+ ++ +V+Y
Sbjct: 480 DYRQRAIKILANSYYGYYAYANARWYCRECAESVTAWGRQYIETTMREIEEKFGFKVLYA 539
Query: 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKV 1099
DTD D K A + + +N + LE++ +G Y+R + KKKYA +
Sbjct: 540 DTDGFFATIPGADAETVKNKAKEFLNYINPRLPGLLELEYEGFYRRGFFVTKKKYAVIDE 599
Query: 1100 QFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
+ K I +GL++VRRDWS ++KE L IL E+ V + +V E
Sbjct: 600 EDK-------ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVK----EVTE 648
Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
+ +V EK VI + +T+ +Y PHV VA RL G G + YI+
Sbjct: 649 KLSRHEVPPEKLVIYEQITRDLRSY--RATGPHVAVAKRLAARG--IKIRPGTVISYIVL 704
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
G + RA DE ++ D +YY Q+ P V R+ +
Sbjct: 705 KGPGR-------VGDRAIPFDEFDPAKHRY--DAEYYIENQVLPAVERILRAF 748
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 174/674 (25%), Positives = 299/674 (44%), Gaps = 92/674 (13%)
Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
+S G++V+ E LL + K+D DV++G+NI FD+ L+ RA+ ++P
Sbjct: 366 SSIVGAHVIP-HKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPE-- 422
Query: 686 WSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
++ +GR+K S++ R + G+ S I + GR D + + SYSL
Sbjct: 423 FALLGRIKTTISKIKSTRFSSSNLGTRESKEI--SMPGRTQFDLMQAIQRDHKLTSYSLN 480
Query: 744 QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
++ L K++KE ++ Q T + L Y DA L M L+ L +L +
Sbjct: 481 NVSAHFL-KEQKEDVHFSIISDLQNGTDDDRRRLAVYCIKDAVLPMRLLDKLMILINYTE 539
Query: 802 LTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDR 861
+ ++G L +V L + +++P
Sbjct: 540 MARVTGVPLSYLLGRGEGIKVLSQLYRKAMVENFLIPT---------------------- 577
Query: 862 NVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 921
++ +G + G +V+EP G YD I LDF SLYPSI+
Sbjct: 578 --------------------YKVTGKGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIM 617
Query: 922 QEYNICFTTV------ERSPDGLVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTW 968
+N+C++T+ ++ P + P S G+LP +L+ L+ R+ K
Sbjct: 618 MAHNLCYSTLLSAEEAKKLPPEIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDE 677
Query: 969 MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
+K K LD +Q ALK++ANS+YG G + ++ +T GRE+L T
Sbjct: 678 LKNEKDPFKRAVLDGRQLALKISANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKK 737
Query: 1028 LVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEID 1078
+V+ + +IYGDTDS+M+ G+ +A+A + + V + + + +D
Sbjct: 738 IVEERYTIANGYKHDAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLD 797
Query: 1079 LDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQIL 1138
+ +Y LL+ KKKYA + D ++ ++ KGL+MVRRD LL + V L +IL
Sbjct: 798 FEKVYYPYLLMAKKKYAGLYWTKPDI--HDRMDVKGLEMVRRDTCLLVRNVVSTILKKIL 855
Query: 1139 SERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALR 1198
E+ + E + V D+ ++ L VITK L+K Y H ++A +
Sbjct: 856 IEKDLKSAEEYTKS----VISDLLQNRLDLSMLVITKALSK--TQY--KGKVIHNELARK 907
Query: 1199 LKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYAS 1258
++ +T + GD VPY++ QG+ I ++A P L + ++D YY
Sbjct: 908 MRARDPATAPNLGDRVPYVVI--QGSKGAP---IYEKAEDP--LYALEHNILLDCQYYLD 960
Query: 1259 QQIHPVVSRLCASI 1272
+Q+ + R+ I
Sbjct: 961 KQLKAPLIRIFKPI 974
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 200/818 (24%), Positives = 359/818 (43%), Gaps = 139/818 (16%)
Query: 496 FLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
+V + G SW+++ K+S RVS C+ E++++ +++ + + P+
Sbjct: 258 LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINY-RNLIAHPAEGDWSHTAPLR 316
Query: 554 VTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRK 608
+ + +++ VF + + I A+VV AK KP + + FT+
Sbjct: 317 IMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-----------KPFIRNVFTL--- 362
Query: 609 LDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
+ S +++ ++E +L+ + K+D DV++G+N + FD
Sbjct: 363 ---------------NTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFD 407
Query: 669 LDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCD 726
+ LL+RA+ +V + GRLK + E+ + +G+ + + I GRL D
Sbjct: 408 IPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFSSKAYGTRETKNV--NIDGRLQLD 463
Query: 727 TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAW 784
+ + SY+L ++ L + +++V + ++ Q E+ L Y DA+
Sbjct: 464 LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAY 522
Query: 785 LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYV 844
L + LM L L ++ ++G + L AR Q+++ +V F
Sbjct: 523 LPLRLMEKLMALVNYTEMARVTGVPFSYLL--ARGQQIK------------VVSQLF--- 565
Query: 845 KETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLY 904
R E+ N + S + Y G V+EP +G Y
Sbjct: 566 ----------------RKCLEIDTVIPNMQSQASDDQ---------YEGATVIEPIRGYY 600
Query: 905 DKYILLLDFNSLYPSIIQEYNICFT------TVER-----------SPDGLVPHLPSSKT 947
D I LDFNSLYPSI+ +N+C+T TVER +P+G + + +
Sbjct: 601 DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDY-FVTTKRR 659
Query: 948 TGVLPELLKNLVQ-RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
G+LP +L L+ R+R K K L+ +Q ALK++ANS+YG G + +
Sbjct: 660 RGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 719
Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSGIDDIAKAK 1058
++ +T GR ++ T VQ ++ V+YGDTDS+M+ G D+ +A
Sbjct: 720 CLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 779
Query: 1059 AIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDM 1117
+ + + V+ +K + ++ + Y LL+ KK+YA + D ++ +++KGL
Sbjct: 780 DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD--KFDKLDQKGLAS 837
Query: 1118 VRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTL 1177
VRRD L V + L +IL ER+ + + + ++ D+ +V + K +I+KTL
Sbjct: 838 VRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIISKTL 893
Query: 1178 TKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236
P+ N QPH +A R+K+ G + GD V Y+I G + + RA
Sbjct: 894 A------PNYTNPQPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYNRA 939
Query: 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
P L + +D YY + Q+ + + A I G
Sbjct: 940 EDP--LFVLENNIQVDSRYYLTNQLQNPIISIVAPIIG 975
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 196/817 (23%), Positives = 359/817 (43%), Gaps = 133/817 (16%)
Query: 496 FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
++ K+ G SW+++ + ++S C+ E ++D +D+ ++ P+ +
Sbjct: 189 LMIDCKITGMSWITLPRDKYKIVNNKISTCQIECSIDY-RDLISHPPEGEWLKMAPLRIL 247
Query: 556 AINL-----KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLD 610
+ ++ K VF + + I A+VV S KP + + FTV
Sbjct: 248 SFDIECAGRKGVFPEAEHDPVIQIANVV-----------QKSGESKPFVRNVFTV----- 291
Query: 611 GGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLD 670
+S GS + + E L++ + K+D DV++G+N + FD+
Sbjct: 292 ------------NTCSSIIGSQIFEHQREEDMLMHWKEF-ITKVDPDVIIGYNTANFDIP 338
Query: 671 VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDT 727
+L+RA+ + + + GRLKR K +F S G + I GR+ D
Sbjct: 339 YVLNRAKALGL--NDFPFFGRLKRV---KQEIKDAVFSSRAYGTRENKVVNIDGRMQLDL 393
Query: 728 FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWL 785
+ + SY+L ++ L + +++V H ++ Q T E+ L Y DA+L
Sbjct: 394 LQFIQREYKLRSYTLNSVSAHFLGEQKEDVQ-HSIITDLQNGTKETRRRLAVYCLKDAFL 452
Query: 786 SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
+ L+ L L ++ ++G + L +R Q+++ ++ FR
Sbjct: 453 PLRLLDKLMCLVNYTEMARVTGVPFSYLL--SRGQQIK-VISQLFR-------------- 495
Query: 846 ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYD 905
K + ED + L +E +N Y G V+EP++G YD
Sbjct: 496 --KCLQ-------EDIVIPNLKSEGSN----------------EEYEGATVIEPERGYYD 530
Query: 906 KYILLLDFNSLYPSIIQEYNICFTTV----------------ERSPDGLVPHLPSSKTTG 949
I LDF+SLYPSI+ +N+C+TT+ ++P+G + S+ G
Sbjct: 531 VPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDY-FVHSNLRKG 589
Query: 950 VLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
+LP +L L+ R+ K +K + K L+ +Q ALK++ANS+YG G + +
Sbjct: 590 ILPTILDELLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCL 649
Query: 1009 PLAELITQQGREILRSTVDLVQ--------NNLNLEVIYGDTDSIMIHSGIDDIAKAKAI 1060
++ +T GRE++ T + VQ + + +VIYGDTDS+M+ G D+ +
Sbjct: 650 AISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKL 709
Query: 1061 AGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119
+ V+ K+K ++++ + +Y LL+ KK+YA + + ++ ++ KG++ VR
Sbjct: 710 GEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG--LYWTRPEKFDKMDTKGIETVR 767
Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
RD L + V L IL ER + ++ D+ ++ L + VITK +K
Sbjct: 768 RDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIA----DLLQNRIDLSQLVITKAYSK 823
Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
+ + Q HV++A R+++ + + GD V Y+I + G +
Sbjct: 824 ----HDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVII--------KTGGDKNYEKSE 871
Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
D L + ID+ YY QQ+ + R+ I G +
Sbjct: 872 DPLYVLENSLPIDVKYYLDQQLTKPLERIFIPILGET 908
>sp|P52025|DPOL_METVO DNA polymerase OS=Methanococcus voltae GN=pol PE=3 SV=1
Length = 824
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 180/679 (26%), Positives = 306/679 (45%), Gaps = 130/679 (19%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
E+ L+ + IE+ K DV+ +N FD L RA + + + ++ ++ K
Sbjct: 231 EKELIQK-TIEILK-QYDVIYTYNGDNFDFPYLKKRANIYEIELD-FDNASNSQQPQIIK 287
Query: 700 LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
+ KG I PGI+ D + +R LL Y L + + +++ V
Sbjct: 288 ISKG-GINRKSKIPGIIHI-------DLYPIARKLLNLTKYKLENVVQELFKINKEAVDY 339
Query: 760 HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARA 819
D+ KM++T ++ L+ Y DA + ++ + LPL + I T + +
Sbjct: 340 GDIPKMWETEDTT--LLRYAYEDALYTYKMGNYF--LPLEIMFSRIVNQPLYDTSRMNSS 395
Query: 820 QRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSH 879
Q VE+LLL + I P N S
Sbjct: 396 QMVEFLLLKRSFEQNMISP------------------------------------NRPSS 419
Query: 880 NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---ERSPD 936
+ +R+ + +Y GG V EP KG+ + I+ LDF SLYPSI+ +NI TV E+ +
Sbjct: 420 SSYRERAKF-SYEGGYVREPLKGIQED-IVSLDFMSLYPSILISHNISPETVIYEEKERE 477
Query: 937 GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ---------LDIQQQAL 987
+ G++P+ L L+ RR+ +K +K KIQ+ L+ +Q+++
Sbjct: 478 NM--------ELGIIPKTLNELLSRRKHIKMLLKD----KIQKNEFDEEYSRLEHEQKSI 525
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K+ ANS YG L F +R+Y+ AE++T GR+ ++ T++ + +VIY DTD
Sbjct: 526 KVLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAE-EFGFKVIYADTDGFYA 584
Query: 1048 HSGIDDIAKAKA----------------------IAGKVIQEVNKKY-KCLEIDLDGLYK 1084
D + K K + K ++ +N++ + +E++ +G +K
Sbjct: 585 KWDYDKLQKGKKEENDKSDKLSNLPKLSKEELIILTKKFLKGINEELPEGMELEFEGHFK 644
Query: 1085 RMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCE 1144
R L + KKKYA ++ DG I KGL++VRRDWS ++K+ + +L +
Sbjct: 645 RGLFVTKKKYALIE---DDGH----IVVKGLEVVRRDWSNIAKDTQQAVIRALLEDGDVN 697
Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
+ I N++ ++++ G + +I LTK E Y PH++VA ++KQ G
Sbjct: 698 LAKKIIKNTI----DNLKKGNIDKNDLLIHTQLTKNIEEYKST--APHIEVAKKIKQRGD 751
Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
S GD + YII +G+ S I++RA EL + G + DI+YY Q+ P
Sbjct: 752 S--VRVGDVISYIIV--KGSRS-----ISERA----ELLEYAGDY--DINYYIDNQVLPP 796
Query: 1265 VSRLCASIEGTSPERLADC 1283
V R+ S+ G S + L +
Sbjct: 797 VIRIMESL-GISEDELKNS 814
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879
/ JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 177/679 (26%), Positives = 302/679 (44%), Gaps = 132/679 (19%)
Query: 628 KAGSNVLCCESSERA---LLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS 684
+AG + E+ +R+ ++ + + +D DV+VG+N + FD L+ RA+V V
Sbjct: 214 QAGGEIEILEAEDRSDKKVIAGFVERVKSIDPDVIVGYNQNRFDWPYLVERARVLGV--- 270
Query: 685 MWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMS--CIAGRLLCDTFLCSRDLLREVSYSL 742
K+ +RS P+ PG+ ++GRL D + +L EV
Sbjct: 271 ---KLAVGRRSVEPQ-------------PGLYGHYSVSGRLNVDLLDFAEEL-HEVKVKT 313
Query: 743 TQLAKTQLNKDRKEVGPHDVLKMFQTLE-----SLMELI-EYGETDAWLSMELMFHLSVL 796
+ L + +G L+ +Q E S E++ +Y D +M L L
Sbjct: 314 LEEVADYLGVVK--IGERVTLEWWQIGEYWDDPSKREILRKYLRDDVRSTMGLAEKF--L 369
Query: 797 PLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNH 856
P +L+ +SG + + + R+E+ L+ +VP
Sbjct: 370 PFGAELSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVP------------------ 411
Query: 857 GVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSL 916
N ++ R YAG +VL PK G+++ I +LDF S+
Sbjct: 412 ------------------NRVERSEGR-------YAGAIVLRPKPGVHED-IAVLDFASM 445
Query: 917 YPSIIQEYNICFTTVER------------SPDGLVPHLPSSKTTGVLPELLKNLVQRRRM 964
YP+I+ +YN+ T+ R +P+ V H G ++L+ + RR
Sbjct: 446 YPNIMVKYNVGPDTLVRPGEEYGEEEVYTAPE--VGHKFRKSPPGFFKKILERFLSWRRQ 503
Query: 965 VKTWMKT--ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
+++ MK + + LD +Q+A+KL AN+ YG +G+ ++R+Y + AE +T GR I+
Sbjct: 504 IRSEMKKHPPDSPEYKLLDERQKAIKLLANASYGYMGWPHARWYCRECAEAVTAWGRSII 563
Query: 1023 RSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGL 1082
R+ + L LEVIYGDTDS+ + +D K + + V +E+ +I +D +
Sbjct: 564 RTAIRKA-GELGLEVIYGDTDSLFVK---NDPEKVERLIRFVEEELG-----FDIKVDKV 614
Query: 1083 YKRMLLLK-KKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSER 1141
Y+R+ + KK+Y + V K I+ G + VR DWS L+KE +L
Sbjct: 615 YRRVFFTEAKKRYVGLTVDGK-------IDVVGFEAVRGDWSELAKETQFKVAEIVLKTG 667
Query: 1142 SCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQ 1201
S ++ V+ + N + E +R GQV + K VI KTLT+PP Y QPHV AL +++
Sbjct: 668 SVDEAVDYVRN----IIEKLRRGQVDMRKLVIWKTLTRPPSMY--EARQPHVTAALLMER 721
Query: 1202 SGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI 1261
+G G + Y++ G + RA+ K + +D++YY +Q+
Sbjct: 722 AGIK--VEPGAKIGYVVTKGSGP-------LYTRAKPYFMASKEE----VDVEYYVDKQV 768
Query: 1262 HPVVSRLCASIEGTSPERL 1280
P R+ G + +RL
Sbjct: 769 VPAALRILQYF-GVTEKRL 786
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 209/842 (24%), Positives = 367/842 (43%), Gaps = 176/842 (20%)
Query: 496 FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
+++ K+ G SW++ K + +++S C +EI + S +HV P+T
Sbjct: 245 YIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDI----------SYEHVE---PIT 291
Query: 554 VTAINLKTVFNKRQDVNE--IVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDG 611
+ N+ Q + + I+S + C KLDG
Sbjct: 292 LE--------NEYQQIPKLRILSFDIECI---------------------------KLDG 316
Query: 612 GIFP-------------MGFNKEATDRNSKAGSNVLCCES----------SERALLNRLM 648
FP + F E D +K +L C S E+ LL
Sbjct: 317 KGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLLECASIPGSNVIWFNDEKTLLEAWN 376
Query: 649 IELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR--SEMPKLRKGRTI 706
+ ++D D L G+NI FDL +L+R + + +GR+K S +
Sbjct: 377 EFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKF--LGRIKNVASTVKDSSFSSKQ 434
Query: 707 FGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKM 765
FG+ + I I GR+ D + L RD + SY+L ++ L K++KE + ++
Sbjct: 435 FGTHETKEIN--IFGRIQFDVYDLIKRDY-KLKSYTLNYVSFEFL-KEQKEDVHYSIMND 490
Query: 766 FQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
Q + ES + Y D L + L+ L + ++ ++G + L + +V
Sbjct: 491 LQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVT 550
Query: 824 YLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
L + Y++P TY+K TNE
Sbjct: 551 SQLYRKCKELNYVIPS--TYMKVN-------------------TNE-------------- 575
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP 943
Y G VLEP KG Y + I LDF SLYPSI+ +N+C++T+ +S + V L
Sbjct: 576 ------KYEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKS-NHEVSDLQ 628
Query: 944 SSKTT-----------------GVLPELLKNLVQRRRMVKTWMKT-ASGLKIQQLDIQQQ 985
+ T G+LP +++ L++ R+ VK +K + + L+ +Q
Sbjct: 629 NDDITTIQGKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQL 688
Query: 986 ALKLTANSMYGCLGFSN-SRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLE 1036
ALK++ANS+YG G S+ + +A IT GR ++ T + V++ N
Sbjct: 689 ALKISANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNST 748
Query: 1037 VIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYA 1095
VIYGDTDS+M+ G ++I +A + + ++K++ ++++ + +Y LLL KK+YA
Sbjct: 749 VIYGDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYA 808
Query: 1096 AVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLM 1155
+ + + ++ ++ KG++ VRRD+ +L +++ + L+++L E++ +E + +
Sbjct: 809 G--LLYTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKI- 865
Query: 1156 KVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ-PHVQVALRLKQSGYSTGCSAGDTV 1214
+++ + + + V+TK+L K D + + PHV++A +LKQ +T + GD V
Sbjct: 866 ---KELLTNNIDMSLLVVTKSLGK-----TDYETRLPHVELAKKLKQRDSATAPNVGDRV 917
Query: 1215 PYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
YII +G G AQ R D L D ID ++Y P +SR+ I
Sbjct: 918 SYIIV--KGVK-----GQAQYERAEDPLYVLDNNLAIDYNHYLDAIKSP-LSRIFEVIMQ 969
Query: 1275 TS 1276
S
Sbjct: 970 NS 971
>sp|O29753|DPOL_ARCFU DNA polymerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=pol PE=3 SV=1
Length = 781
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 168/673 (24%), Positives = 301/673 (44%), Gaps = 128/673 (19%)
Query: 634 LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK 693
+ ER +++ + + D D++VG+N FD L RA+ +P +GR
Sbjct: 198 IILTGDERKIISDFVKLIKSYDPDIIVGYNQDAFDWPYLRKRAERWNIPLD----VGR-- 251
Query: 694 RSEMPKLRKGRTIFGSGASPGIMSCIAGRL---LCDTFLCSRDLLREVSYSLTQLAKTQL 750
G + G P I GRL L D + D+ + ++ + T++
Sbjct: 252 --------DGSNVVFRGGRPKI----TGRLNVDLYDIAMRISDIKIKKLENVAEFLGTKI 299
Query: 751 NKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
+ ++ D+ + + E +++ Y DA + + +LP+ +L+ +
Sbjct: 300 --EIADIEAKDIYRYWSRGEK-EKVLNYARQDAINTY--LIAKELLPMHYELSKMIRLPV 354
Query: 811 GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
+ R ++V++LLL + I P
Sbjct: 355 DDVTRMGRGKQVDWLLLSEAKKIGEIAP-------------------------------- 382
Query: 871 ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI---- 926
N H + +Y G VLEP++GL++ + LDF S+YPSI+ +NI
Sbjct: 383 ----NPPEHAE--------SYEGAFVLEPERGLHEN-VACLDFASMYPSIMIAFNISPDT 429
Query: 927 --CFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS--GLKIQQLDI 982
C +P+ V H G +L+ L+++RR +K +K S + + LDI
Sbjct: 430 YGCRDDCYEAPE--VGHKFRKSPDGFFKRILRMLIEKRRELKVELKNLSPESSEYKLLDI 487
Query: 983 QQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDT 1042
+QQ LK+ NS YG +G++ +R+Y P AE T GR +R++ + + ++ +V+YGDT
Sbjct: 488 KQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAWGRHFIRTSAKIAE-SMGFKVLYGDT 546
Query: 1043 DSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
DSI + K ++I +++++ ++I++D Y + ++KK+YA + +
Sbjct: 547 DSIFVTKA----GMTKEDVDRLIDKLHEELP-IQIEVDEYYSAIFFVEKKRYAGLT---E 598
Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
DG + KGL++ R DW L+K+V + IL E++ E + + + +++++E
Sbjct: 599 DGR----LVVKGLEVRRGDWCELAKKVQREVIEVILKEKNPEKALSLVKDVILRIKE--- 651
Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQ 1222
G+V+LE+ VI K LTK P Y Q HV+ AL+ ++ G S+ + Y+I
Sbjct: 652 -GKVSLEEVVIYKGLTKKPSKYESM--QAHVKAALKAREMGIIYPVSS--KIGYVIVKGS 706
Query: 1223 GTSSGSSVGIAQRARHPDELKKGDGKWM------------IDIDYYASQQIHPVVSRLC- 1269
G I RA D ++ DG+ + +D DYY QI P V R+
Sbjct: 707 GN-------IGDRAYPIDLIEDFDGENLRIKTKSGIEIKKLDKDYYIDNQIIPSVLRILE 759
Query: 1270 ------ASIEGTS 1276
AS++G+S
Sbjct: 760 RFGYTEASLKGSS 772
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 188/821 (22%), Positives = 340/821 (41%), Gaps = 157/821 (19%)
Query: 500 RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA-----EVPPVTV 554
R + W+ +SK + P R+S DI V +S +H+ EVPP+ +
Sbjct: 138 RNINPADWMHVSK--AFPVETRIS----------NSDIEVETSFQHLGPSDLKEVPPLII 185
Query: 555 TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
+ +++T ++K + + + C +A+ ++K G + V
Sbjct: 186 ASWDIET-YSKDRKFPLAENPADYCIQ--------IATTFQKYGEPEPYRRVV------- 229
Query: 615 PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
+ + + A S G ++ C + E ++N M L +DV +G+N+ +DL +
Sbjct: 230 -VCYKQTA----SVEGVEIISC-AEEADVMNTWMTILQDEITDVSIGYNLWQYDLRYIHG 283
Query: 675 RAQVC-----RVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL 729
R+ +C + +GRL + + + G + + + G + D
Sbjct: 284 RSMMCVDDITGEDNVRLKNLGRLLVGGGEVIERDLSSNAFGQNKFFLLDMPGVMQIDLLQ 343
Query: 730 CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE-YGETDAWLSME 788
R SYSL ++K L + ++ + + F+ +I Y D L ++
Sbjct: 344 WFRKNRNLESYSLNNVSKLYLGDQKNDLPAMQIFEKFEGGADDRAIIAAYARKDTDLPLK 403
Query: 789 LMFHLSVLPLTRQLTN-ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKET 847
L+ +++L ++ N + + +G + + L+ A R Y +PD + +
Sbjct: 404 LLKKMAILEDITEMANAVKVPVDYINFRGQQVRAFSCLVGKA-RQMNYAIPDDKMWTVDG 462
Query: 848 KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKY 907
K Y G VL+ KKG Y
Sbjct: 463 K------------------------------------------YEGATVLDAKKGAYFTS 480
Query: 908 ILLLDFNSLYPSIIQEYNICFTTVERSPDGLV-----PHLP------------------- 943
I LDF SLYPSII+ +N+ SP+ LV +LP
Sbjct: 481 IAALDFASLYPSIIRAHNM-------SPETLVMDKRFENLPGIEYYEIETGLGTFKYPQK 533
Query: 944 ---SSKTTGVLPELLKNLVQRRRMVKTWMKTASG----LKIQQLDIQQQALKLTANSMYG 996
+ + GV+P LL +L + R+ K M A + D QQ++ K+ NS+YG
Sbjct: 534 NDETGEGQGVVPALLDDLAKFRKQAKKHMAEAKKNDDEFREALYDAQQRSYKIVMNSVYG 593
Query: 997 CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL-NLEVIYGDTDSIMIH-----SG 1050
LG S P+A +T GR+++ T V L EVIYGDTDS+MI
Sbjct: 594 FLGASRGFIPCVPIAASVTATGRKMIEHTAKRVTELLPGSEVIYGDTDSVMIRMKLPDDK 653
Query: 1051 IDDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEV 1109
I D+ + +A + E+ K +K +++ + +Y +L KK+YAA+K F+D
Sbjct: 654 IHDMDEQFKMAKWLAGEITKDFKAPNDLEFEKIYYPYILYSKKRYAAIK--FEDPDEKGK 711
Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
++ KGL +VRRD+S +++E+ L IL ++ V + KV ++ + +E
Sbjct: 712 VDVKGLALVRRDFSPITREILKESLDTILFKKDTPTAVTETVECIRKVLDN----EYPME 767
Query: 1170 KYVITKTLTKPPEAYPDAKN--QPHVQVALRL-KQSGYSTGCSAGDTVPYIICCEQGTSS 1226
K+ ++KTL KN QPH+ V+ ++ +++G+ +G VP++ ++
Sbjct: 768 KFTMSKTLKT------GYKNECQPHLHVSNKIFERTGFP--VPSGARVPFVYIEDK---- 815
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQI-HPVVS 1266
++ Q R D + ++D +Y Q+ P+ S
Sbjct: 816 -KNLDTKQSFRAEDPTFAQENDLIVDRLFYIEHQLMKPICS 855
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 196/828 (23%), Positives = 341/828 (41%), Gaps = 171/828 (20%)
Query: 500 RKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVA-----EVPPVTV 554
R + W+ +SK + PA R+S DI V +S +H+ VPP+ +
Sbjct: 138 RNINPADWIRVSK--AYPAQTRIS----------NSDIEVETSFQHLGPVEDKTVPPLVI 185
Query: 555 TAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIF 614
+ +++T ++K + + + C +A+ ++K G + V
Sbjct: 186 ASWDIET-YSKDRKFPLAENPTDYCIQ--------IATTFQKYGEPEPYRRVVVCYKQTA 236
Query: 615 PMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLH 674
P+ G ++ C E ++N M L +DV +G+N +DL +
Sbjct: 237 PV------------EGVEIISC-LEESDVMNTWMKILQDEKTDVSIGYNTWQYDLRYVHG 283
Query: 675 RAQVC--------RVPSSMWSKI----GRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGR 722
R Q+C +V S ++ G + ++ G+ F PG+M
Sbjct: 284 RTQMCVDDMTGEDKVKLSNLGRLLSGGGEVVERDLSSNAFGQNKFFLLDMPGVMQID--- 340
Query: 723 LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ-TLESLMELIEYGET 781
L F +R+L SYSL ++K L + ++ + + F+ E + Y
Sbjct: 341 -LLQWFRKNRNL---ESYSLNNVSKLYLGDQKNDLPAMQIFEKFEGNAEDRAIIAAYAAK 396
Query: 782 DAWLSMELMFHLSVLP-LTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
D L ++L+ +++L LT + + +G + + L+ A R Y +PD
Sbjct: 397 DTDLPLKLLKKMAILEDLTEMANAVKVPVDYINFRGQQIRAFSCLVGKA-RQMNYAIPDD 455
Query: 841 FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK 900
+ E K Y G VL+ K
Sbjct: 456 KAWATEGK------------------------------------------YEGATVLDAK 473
Query: 901 KGLYDKYILLLDFNSLYPSIIQEYNICFTTV------ERSP--------DGLVPHLPSSK 946
KG Y I LDF SLYPSII+ +N+ T+ E P GL + K
Sbjct: 474 KGAYFTPIAALDFASLYPSIIRAHNMSPETLVMEKRFENVPGVEYYEIETGLGKFKYAQK 533
Query: 947 T------TGVLPELLKNLVQRRRMVKTWMKTA----SGLKIQQLDIQQQALKLTANSMYG 996
GV+P LL +L + R++ K M A K D QQ++ K+ NS+YG
Sbjct: 534 NDETGEGQGVVPALLDDLAKFRKLAKKHMAEAKRNGDDFKEALYDAQQRSFKVVMNSVYG 593
Query: 997 CLGFSNSRFYAKPLAELITQQGREILRST----VDLVQNNLNLEVIYGDTDSIM------ 1046
LG S P+A +T GR+++ T V+L+ + EVIYGDTDS+M
Sbjct: 594 FLGASKGFIPCVPIAASVTATGRKMIEHTAKRAVELLPGS---EVIYGDTDSVMVKMKLP 650
Query: 1047 ---IHSGIDDIAKAKAIAGKVIQEVNKKYKCL-EIDLDGLYKRMLLLKKKKYAAVKVQFK 1102
+H + AK +AG E+ K ++ +++ + +Y +L KK+YAAVK F+
Sbjct: 651 DDKVHDMDEQFKMAKWLAG----EITKDFRAPNDLEFEKIYYPYILYSKKRYAAVK--FE 704
Query: 1103 DGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMR 1162
+ ++ KGL +VRRD+S +++++ L IL ++ V + KV ++
Sbjct: 705 EPDEKGKVDVKGLALVRRDFSPITRDILKESLDTILYKKDTPTAVSETLERIRKVLDN-- 762
Query: 1163 SGQVALEKYVITKTLTKPPEAYPDAKN--QPHVQVALRL-KQSGYSTGCSAGDTVPYIIC 1219
+ +EK++++K L KN QPH+ VA ++ +++G+ +G VP++
Sbjct: 763 --EYPMEKFMMSKLLKT------GYKNECQPHLHVANKIYERTGFP--VPSGARVPFVYI 812
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ-IHPVVS 1266
++ I Q + D D ++D +Y Q + P+ S
Sbjct: 813 EDKKNPD-----IKQSFKAEDPTFAQDNGLIVDRLFYIEHQLLKPICS 855
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3 SV=1
Length = 1009
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 159/693 (22%), Positives = 290/693 (41%), Gaps = 135/693 (19%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRA-QVCRVPSSMWSKI--GRLKRS 695
SE +L+ + + +++ G+NIS FDL L+ RA Q+ + S +S++ G + +
Sbjct: 345 SEIDMLHGFFSLIRDFNVEIITGYNISNFDLPYLIDRATQIYNIKLSDYSRVKTGSIFQV 404
Query: 696 EMPKLRKGRTIFGSGASPGIMSC-IAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDR 754
PK G+G + I+G + D ++ +D L +Y L +A + +
Sbjct: 405 HTPKDT------GNGFMRSVSKIKISGIIAIDMYIVCKDKLSLSNYKLDTVANHCIGAKK 458
Query: 755 KEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
++V D++ +F + E ++ Y D+ L M+L+ + ++ ++ +
Sbjct: 459 EDVSYKDIMPLFMSGPEGRAKIGLYCVIDSVLVMKLLKFFMIHVEISEIAKLAKIPTRRV 518
Query: 814 LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
L + RV LL A RA+ YI+P + D N
Sbjct: 519 LTDGQQIRVFSCLLAAARAENYILP----------------------------VSNDVNA 550
Query: 874 DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT-VE 932
D + G V+ P G Y+ +L++DF SLYPSIIQ +N+C++T +
Sbjct: 551 D---------------GFQGATVINPIPGFYNNAVLVVDFASLYPSIIQAHNLCYSTLIP 595
Query: 933 RSPDGLVPHLPSSK------------------TTGVLPELLKNLVQRRRMVKTWMKTASG 974
PHL SS +L LL + +R+ ++ +
Sbjct: 596 HHALHNYPHLKSSDYETFMLSSGPIHFVKKHIQASLLSRLLTVWLSKRKAIRQKLAECED 655
Query: 975 LKIQQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRS--------T 1025
L + LD QQ A+K+T N++YG G ++ +AE +T QGR +L T
Sbjct: 656 LDTKTILDKQQLAIKVTCNAVYGFTGVASGLLPCISIAETVTLQGRTMLEKSKIFIEAMT 715
Query: 1026 VDLVQN----------NLNLEVIYGDTDSIMIHS---GIDDIAKAKAIAGKVIQEVNKKY 1072
D +Q + VIYGDTDS+ + +D + K E K +
Sbjct: 716 PDTLQEIVPHIVKHEPDAKFRVIYGDTDSLFVECVGYSVDTVVKFGDFLAAFTSE--KLF 773
Query: 1073 KC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD---------- 1121
++++ + ++ +LLL KK+Y + K M KG+D+VR+
Sbjct: 774 NAPIKLESEKTFQCLLLLAKKRYIGILSNDKLLM-------KGVDLVRKTACKFVQNTSS 826
Query: 1122 --WSLLSKEVGDFCLSQILSERSCEDVV-ESIHNSLMKV-------QEDMRSGQVALEKY 1171
+L+ K+ +Q+LS + + E + + +KV +++R+GQV +E+
Sbjct: 827 KILNLILKDPEVKAAAQLLSTKDPDYAFREGLPDGFLKVIDILNESHKNLRTGQVPVEEL 886
Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
+ L++P +Y +N PH+ V ++ + + D +PY+ ++
Sbjct: 887 TFSTELSRPISSY-KTENLPHLTVYKKI-ITRHEEPPQVHDRIPYVFV------GKTTSC 938
Query: 1232 IAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
I+ A P + + I +D Y + IH V
Sbjct: 939 ISNMAEDPTYTVQNNIP--IAVDLYFDKLIHGV 969
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 160/694 (23%), Positives = 283/694 (40%), Gaps = 114/694 (16%)
Query: 626 NSKAGSNVLCCE----SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
NS G + C +SE L+N ++ +LD ++ G+ + L+ RA R
Sbjct: 705 NSSFGRSFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY-RF 763
Query: 682 PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
+ ++ RLK + K + + I I GR + + + R + ++YS
Sbjct: 764 NYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSIN--IVGRHVLNIWRILRGEVNLLNYS 821
Query: 742 LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
L + K D + ++Q+ L+ Y +E++ +++
Sbjct: 822 LENVVLNIFKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKI 881
Query: 800 RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
R+ I G + + +VE ++ + + YI P + AKQ V
Sbjct: 882 REQARIIGIDFMSVISRGSQFKVESIMFRIAKPENYIFP--------SPSAKQ-----VA 928
Query: 860 DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPS 919
++N E A LV+EPK LY+ +++LDF SLYPS
Sbjct: 929 EQNALE--------------------------ALPLVMEPKSDLYNNPVVVLDFQSLYPS 962
Query: 920 IIQEYNICFTT--------------------------------VERSPDGLVPHLPSSKT 947
II YN+C++T V SP+G ++ +
Sbjct: 963 IIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPNGYA-YVKENVR 1021
Query: 948 TGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFSNS-RF 1005
+L ++L+ L++ R MVK MK + + L+ +Q ALKL AN YG S S R
Sbjct: 1022 KSLLAKMLEELIETRNMVKRGMKDCDSDYVNKVLNSRQLALKLIANVTYGYTSASFSGRM 1081
Query: 1006 YAKPLAELITQQGREILRSTVDLVQNNLNL---EVIYGDTDSIMIHSGIDDIAKAKAIAG 1062
+A+ I + GREIL +++ + N L+ +V+YGDTDS+ + +A I
Sbjct: 1082 PCSEIADTIVETGREILSYSLEYI-NTLDFCHAKVVYGDTDSLFVELPGATKEQAFDIGQ 1140
Query: 1063 KVIQEVNKKYKC-LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRD 1121
++ + ++ + + + +Y LL KK+Y K + + E KG++ VRRD
Sbjct: 1141 QLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFE-SVSQKAPIFEAKGIETVRRD 1199
Query: 1122 WSLLSKEVGDFCLSQILS-------ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
+ + +++ CL + ++ ++V I + + V + S +V LEKY
Sbjct: 1200 GTPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFCFSKEVRLEKY--- 1256
Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
K L+ P P +A RL G+ VPY+I ++ +A
Sbjct: 1257 KELSTAP---------PGAVMARRLMTKDPRREPQYGERVPYLI-----IAAAPGTTLAN 1302
Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
R+ P+E +DI+YY + + P + R
Sbjct: 1303 RSVAPEEFLSSSFS-QLDINYYINNSLIPPLDRF 1335
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1 (strain
C500) GN=9 PE=3 SV=1
Length = 1026
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 152/628 (24%), Positives = 256/628 (40%), Gaps = 125/628 (19%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ-VCRVPSSMWSKIGRLKRSEM 697
SE LL L +++ G+NI FD +L+RAQ V + +SK +
Sbjct: 375 SEMDLLYGFFTLLRDYGIEMITGYNICNFDFPYILNRAQNVYNIKPEDFSKTKTNSLFYV 434
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
++G F S MS G ++ D + RD L +Y L +AK L + + +V
Sbjct: 435 YTPQEGN--FMRSHSKVKMS---GVVVIDMYQVCRDKLNLSNYKLNTVAKECLGEKKNDV 489
Query: 758 GPHDVLKMFQ-TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
D+ +F+ + + +L Y DA L ++L+ H ++ I+ + L
Sbjct: 490 SYKDIPILFKGSSKDRAKLGMYCVQDAVLVIDLLKHFMTHIEITEIAKIANIPTRRVLSD 549
Query: 817 ARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDND 876
+ RV LL A + + YI+P T +E
Sbjct: 550 GQQIRVFTCLLAAAQERDYILPMPVTGSQE------------------------------ 579
Query: 877 TSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
Y G V+ P G Y+ +L++DF SLYPSIIQ +N+C++T+ + D
Sbjct: 580 -------------GYQGATVINPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQQD 626
Query: 937 -------------------GLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI 977
G V + KT +L LLK + +R+ +K ++ K+
Sbjct: 627 LPKFTNLTANDYETFMISGGPVHFVKKHKTESLLASLLKTWLAKRKSIKKELEQCQDAKM 686
Query: 978 QQ-LDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN----- 1031
+ LD QQ A+K+T NS+YG G ++ +AE +T QGR +L T V+N
Sbjct: 687 KTILDKQQLAIKVTCNSVYGFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENVTVEY 746
Query: 1032 ----------------NLNLEVIYGDTDSIMIHS---GIDDIAK-AKAIAGKVIQEVNKK 1071
N V+YGDTDS+ I +D + K A+A +
Sbjct: 747 LQKICNFEVQCLPQHPNPKFRVVYGDTDSLFIKCEGFAMDTVIKFGDALASHTSSVLFA- 805
Query: 1072 YKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
++++ + ++K ++LL KK+Y + K I KG+D+VR+ + +EV
Sbjct: 806 -SPIKLESEKVFKCLMLLTKKRYVGILSNNK-------ILMKGVDLVRKTACVYVQEVTR 857
Query: 1132 FCLSQILSERSCEDVVESIHNS--------------------LMKVQEDMRSGQVALEKY 1171
L +L + + +++ S L + D++S +V +
Sbjct: 858 AVLELLLRDEEVKVAAQTLSYSPVANCFKTEPLLGFLKIIDILNQSYSDLKSNKVPVANL 917
Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRL 1199
+ L+KP Y N PH+ V +L
Sbjct: 918 TYSTELSKPFTEY-KTTNLPHLAVYKKL 944
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 165/714 (23%), Positives = 289/714 (40%), Gaps = 112/714 (15%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
SE +L I L + + G+NI+GFD+ +L RA+ K+ ++ +
Sbjct: 365 SEYEMLRGFFIFLSWYSPEFITGYNINGFDIKYILTRAE----------KLYKMDVGQFT 414
Query: 699 KLRKGRTIF---------GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
KLR+G +F G G S + +G ++ D + +Y L +A+
Sbjct: 415 KLRRGGRMFVFSPEKGKAGFGTSNTVKVFWSGTVVLDMYPVCTAKASSPNYKLDTMAEIY 474
Query: 750 LNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGN 808
L K + ++ ++ F E +Y DA L EL L+ + ++
Sbjct: 475 LKKKKDDLSYKEIPVQFSAGDEGRAPGGKYCLQDAVLVRELFEMLAFHFEAAAIARLARI 534
Query: 809 LWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTN 868
K + + R+ LL + I+P+ + + + T+
Sbjct: 535 PLRKVIFDGQQIRIYTCLLEECSGRDMILPN----MPSLGHGAAAAIEEAAAGGEGDETS 590
Query: 869 EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
E N +N R Y G VLEP+ G + + + DF SLYPSII N+C+
Sbjct: 591 EGENSNN----------SRTVGYQGATVLEPECGFHHVPVCVFDFASLYPSIIMSNNLCY 640
Query: 929 TT--VERSPDGLVP---------------HLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
+T VE SP+ VP + + +L ELL + +R++V+ MK
Sbjct: 641 STLLVEGSPE--VPEKDVLRVEIGDQCHRFVRENVHRSLLAELLVRWLTQRKLVREAMKQ 698
Query: 972 ASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
+ ++ +D QQ ALK+T N+ YG G + P+A IT+ GR++L +T ++
Sbjct: 699 CTNEMQRMIMDKQQLALKVTCNAFYGFTGVAAGMLPCLPIAASITKIGRDMLLATAGHIE 758
Query: 1031 NNLN----------------------LEVIYGDTDSIM-IHSGIDDIAKAKAIAGKVIQE 1067
+ N +++IYGDTDS+ GID A KA+
Sbjct: 759 DRCNRPDFLRTVLGLPPEAIDPEALRVKIIYGDTDSVFAAFYGIDKEALLKAVGALAANV 818
Query: 1068 VNKKYK-CLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLS 1126
N +K + ++ + ++ ++++ KK+Y KV + KG+D+VRR
Sbjct: 819 TNALFKEPVRLEFEKMFVSLMMICKKRYIG-KVHGSQNL-----SMKGVDLVRRTACGFV 872
Query: 1127 KEVGDFCLSQI------------LSERSCEDVVES--------IHNSLMKVQEDMRSGQV 1166
K V L + LS + +D+ ++ + + L + ++D+ +V
Sbjct: 873 KAVVSDVLHMVFNDETVSEGTMKLSRMTFDDLKKNGIPCEFGPVVSRLCRARDDLHLKKV 932
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + ++ L++ Y KN PH+ V RL + GD V Y++ G
Sbjct: 933 PVPELTLSSVLSQELSCY-KQKNLPHLAVIRRLAARKEELP-AVGDRVEYVLTLPDGCKK 990
Query: 1227 G-SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
+ IA+ RH E K I+ + Y Q + V + L P+R
Sbjct: 991 NVPNYEIAEDPRHVVE-----AKLSINAEKYYEQVVKAVTNTLMPVFPRDMPKR 1039
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3 SV=2
Length = 1117
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 161/667 (24%), Positives = 277/667 (41%), Gaps = 127/667 (19%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
SE LL I D+L G+NI+ FD+ LL R + KI SE
Sbjct: 378 SEYELLLGFFIFFKAYPPDILTGYNINLFDIKYLLQRME----------KIYHANVSEFT 427
Query: 699 KLRKG--RTIF-------GSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQ 749
KLR G +I+ + +S I G ++ D + +Y L +A+
Sbjct: 428 KLRFGGRFSIYVPVGTKPRNASSASIKVHCTGTVVLDMYPVCVAKTSAPNYKLETMAEMY 487
Query: 750 LNKDRKEVGPHDVLKMFQTLESLMELI-EYGETDAWLSMELM----FHLSVLPLTRQLTN 804
LN+ + ++ ++ F ++ ++ Y DA L L +H + R L
Sbjct: 488 LNEHKDDLSYKEIPPTFLANDNGRAVVGRYCIKDALLVKRLFEKLNYHYEAASVAR-LAR 546
Query: 805 ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVE 864
I L +G + R+ +L + I+P T + ++A + S + + E
Sbjct: 547 IP--LRSVIFEGQQI-RIYSCILEEAGERNMILPSFLTAKRPGELATESSPVASFEEDSE 603
Query: 865 ELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEY 924
+ ++ + +D G Y G VLEP G YD + + DF SLYPSII +
Sbjct: 604 QTSDSSLGEVSSQGSSDG-----GVGYQGATVLEPDVGFYDTPVAVFDFASLYPSIIMRH 658
Query: 925 NICFTTVERSPDGLVPHLPSSKTTG---------------------------VLPELLKN 957
N+C++T +LP + G +L ELL
Sbjct: 659 NLCYST----------YLPLGRDDGLSDDDVFLLEFDDGTRYGFVREHVRKSILGELLAR 708
Query: 958 LVQRRRMV-KTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQ 1016
+ +R+ V K + ++ LD Q ALK+T N+ YG G S+ P+A IT+
Sbjct: 709 WLAKRKSVRKVLAECQDEVEKLILDKYQLALKVTCNAFYGFTGVSSGMMPCLPIAAAITR 768
Query: 1017 QGREILRSTVDLVQ--------------------NNLNLEVIYGDTDSIMIHSG----ID 1052
GR++L S VD V + LN++VIYGDTDS+ + G
Sbjct: 769 IGRDMLMSVVDYVNTYMGHAEFWLRYLGEEDLTGDALNVKVIYGDTDSVFVICGGVKCGS 828
Query: 1053 DIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAA-VKVQFKDGMPYEVIE 1111
+ +AIAG + + + + + ++++ + ++ ++++ KK+Y + Q K M
Sbjct: 829 VLEHGEAIAGHITRALFR--EPIKLEFEKVFVNLMMICKKRYVGRIYGQTKLSM------ 880
Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQI------------LSERSCEDV--------VESIH 1151
KG+++VR+ K L+ I LS + +DV I
Sbjct: 881 -KGIELVRKTACEYVKSTVRNVLNMIFFEDDVSAGAVELSRMTMDDVKRHGVPSGFYRIV 939
Query: 1152 NSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAG 1211
+L ++++ +V ++K V++ +L++ AY +N PH++V RL S G
Sbjct: 940 EALSNARDELYLNRVDVKKLVLSASLSQEVSAY-KQQNLPHLRVIQRLAARREELP-SVG 997
Query: 1212 DTVPYII 1218
D VPY++
Sbjct: 998 DRVPYVL 1004
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 154/636 (24%), Positives = 265/636 (41%), Gaps = 110/636 (17%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
SE LL M + + + G+NI FD ++ + + S G + R +
Sbjct: 423 SEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLN--SIYSLKLDGYGSINRGGLF 480
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
K+ + SG I G + D + + + L+ SY L +A+ LN+ ++++
Sbjct: 481 KIWD---VGKSGFQRRSKVKINGLISLDMYAIATEKLKLSSYKLDSVAREALNESKRDLP 537
Query: 759 PHDVLKMFQTLESLMELI-EYGETDAWLSMELMF----HLSVLPLTRQLTNISGNLWGKT 813
D+ + + + +I EY D+ L +L F HL + + R L I+ K
Sbjct: 538 YKDIPGYYASGPNTRGIIGEYCIQDSALVGKLFFKYLPHLELSAVAR-LARIT---LTKA 593
Query: 814 LQGARAQRVEYLLLHAFRAKKYIVPD-----KFTYVKETKMAKQRSNHGVEDRNVEELTN 868
+ + R+ LL ++ +I+PD F Y ED +V
Sbjct: 594 IYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGT 653
Query: 869 EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
R Y G V +P G Y +++LDF SLYPSIIQ +N+CF
Sbjct: 654 SSG---------------RNVGYKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCF 698
Query: 929 TTVERSPDGLVPHLPSSKTT-----------------GVLPELLKNLVQRRRMVKTWMKT 971
TT+ + + + PS T +L LLK+ + R+ ++ +
Sbjct: 699 TTLTLNFETVKRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIRARIPG 758
Query: 972 ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
+S + LD QQ A+K+ NS+YG G + +A +T GR++L ST D + N
Sbjct: 759 SSSDEAVLLDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHN 818
Query: 1032 N-----------------------LNLEVIYGDTDSIMIH---SGIDDIAKAKAIAGKVI 1065
N ++VIYGDTDS+ I G++ IAK I K+
Sbjct: 819 NWAAFERFITAFPDIESSVLSQKAYEVKVIYGDTDSVFIRFKGVGVEGIAK---IGEKMA 875
Query: 1066 QEVNKKYKC--LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR--- 1120
++ C ++++ + + ++LL+ KKKY V K M KG+D+VR+
Sbjct: 876 HIISTALFCPPIKLECEKTFIKLLLITKKKYIGVIYGGKVLM-------KGVDLVRKNNC 928
Query: 1121 ----DWS--LLSKEVGDFCLSQILSERSCEDVVE-----------SIHNSLMKVQEDMRS 1163
D++ L+ + D +S+ +E SC + E + + S
Sbjct: 929 QFINDYARKLVELLLYDDTVSRAAAEASCVSIAEWNRRAMPSGMAGFGRIIADAHRQITS 988
Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
++ + K+V+T L++PP AY + + H+ V +L
Sbjct: 989 PKLDINKFVMTAELSRPPSAYIN-RRLAHLTVYYKL 1023
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 153/636 (24%), Positives = 264/636 (41%), Gaps = 110/636 (17%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
SE LL M + + + G+NI FD ++ + + S G + R +
Sbjct: 423 SEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLN--SIYSLKLDGYGSINRGGLF 480
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
K+ + SG I G + D + + + L+ SY L +A+ LN+ ++++
Sbjct: 481 KIWD---VGKSGFQRRSKVKINGLISLDMYAIATEKLKLSSYKLDSVAREALNESKRDLP 537
Query: 759 PHDVLKMFQTLESLMELI-EYGETDAWLSMELMF----HLSVLPLTRQLTNISGNLWGKT 813
D+ + + + +I EY D+ L +L F HL + + R L I+ K
Sbjct: 538 YKDIPGYYASGPNTRGIIGEYCIQDSALVGKLFFKYLPHLELSAVAR-LARIT---LTKA 593
Query: 814 LQGARAQRVEYLLLHAFRAKKYIVPD-----KFTYVKETKMAKQRSNHGVEDRNVEELTN 868
+ + R+ LL ++ +I+PD F Y ED +V
Sbjct: 594 IYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGT 653
Query: 869 EDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICF 928
R Y G V +P G Y +++LDF SLYPSIIQ +N+CF
Sbjct: 654 SSG---------------RNVGYKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCF 698
Query: 929 TTVERSPDGLVPHLPSSKTT-----------------GVLPELLKNLVQRRRMVKTWMKT 971
TT+ + + + PS T +L LLK+ + R+ ++ +
Sbjct: 699 TTLTLNFETVKRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIRARIPG 758
Query: 972 ASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
+S + LD QQ A+K+ NS+YG G + +A +T GR++L ST D + N
Sbjct: 759 SSSDEAVLLDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHN 818
Query: 1032 N-----------------------LNLEVIYGDTDSIMIH---SGIDDIAKAKAIAGKVI 1065
N ++VIYGDTDS+ I ++ IAK I K+
Sbjct: 819 NWAAFERFITAFPDIESSVLSQKAYEVKVIYGDTDSVFIRFKGVSVEGIAK---IGEKMA 875
Query: 1066 QEVNKKYKC--LEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRR--- 1120
++ C ++++ + + ++LL+ KKKY V K M KG+D+VR+
Sbjct: 876 HIISTALFCPPIKLECEKTFIKLLLITKKKYIGVIYGGKVLM-------KGVDLVRKNNC 928
Query: 1121 ----DWS--LLSKEVGDFCLSQILSERSCEDVVE-----------SIHNSLMKVQEDMRS 1163
D++ L+ + D +S+ +E SC + E + + S
Sbjct: 929 QFINDYARKLVELLLYDDTVSRAAAEASCVSIAEWNRRAMPSGMAGFGRIIADAHRQITS 988
Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
++ + K+V+T L++PP AY + + H+ V +L
Sbjct: 989 PKLDINKFVMTAELSRPPSAYIN-RRLAHLTVYYKL 1023
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1 (isolate
Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 148/654 (22%), Positives = 266/654 (40%), Gaps = 138/654 (21%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
+SE L+ + + + + G+NI+ FD+ ++ R CR + ++KR M
Sbjct: 379 ASEYELIESFLTFVRVYGPNFITGYNINAFDIPYVIGR---CRYYNIQCGAFTKMKRGRM 435
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEV 757
KG F + + I+G ++ D + D + ++ L + L + + V
Sbjct: 436 TCF-KGMESFLNRCQCKVT--ISGIVIIDMYRVCMDKVSAPNHKLDTVVDMLLGEKKHSV 492
Query: 758 GPHDVLKMFQTLESLMELI-EYGETDAWLS----MELMFHLSVLPLTRQLTNISGNLWGK 812
+ +F+ + ++ Y D+ L +L+FH + R L+NIS N K
Sbjct: 493 SYKQIPVLFRRDDDGRAVVGAYCVHDSVLVHKLFCKLLFHYEASAIAR-LSNISIN---K 548
Query: 813 TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
+ + R+ +L A R + I+P +++E ED
Sbjct: 549 VVFDGQQSRIFTCMLAAARREGLIIP-----------------------SIDE-AGEDT- 583
Query: 873 FDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV- 931
Y G VLEPK G Y+ + + DF SLYPSIIQ YN+C+ T+
Sbjct: 584 ------------------YQGATVLEPKTGFYNTPVAVFDFASLYPSIIQAYNLCYCTLI 625
Query: 932 --------------------ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKT 971
R + PH+ S +L +LL + + R+ V+ +K
Sbjct: 626 TDNYVASLREEDITMVTTNTGRVHRFVKPHVRKS----ILSQLLTSWLAERKAVREKLKH 681
Query: 972 ASGLKIQ-QLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLV- 1029
+Q LD QQ ALKLT N++YG G S F +AE +T QGR++L T +
Sbjct: 682 CKDPLMQILLDKQQLALKLTCNAVYGFTGVSKGMFPCLAIAESVTAQGRQLLAVTKQYIC 741
Query: 1030 ----------------------QNNLNLEVIYGDTDSIMI-HSGIDDIAKAKAIAGKVIQ 1066
N ++V+YGDTDS+ + GI++ + + +
Sbjct: 742 DRFNDWTFLTQIAPELVDCPVDSNRFKIDVVYGDTDSVFVLLCGIENADRLYSALPNFVA 801
Query: 1067 EVNKKY--KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSL 1124
+ K +++++D +++++LLL KK+Y V E + KG+D+VRR+
Sbjct: 802 HITKTLFPPPIKLEVDKVFEKLLLLCKKRYVGVL------HGEEKLSMKGIDLVRRNVCG 855
Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNS--------------------LMKVQEDMRSG 1164
K + + S+ + V+ + + +E +
Sbjct: 856 FVKNTTLAVIKSLFSDNVISEAVQKMSGMTQDQVCKEGLPPGFFKLVALITDARERLYEN 915
Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
+V + + ++ TLT+ + Y +N PH+ V +R K + GD + Y++
Sbjct: 916 RVDIHELQLSATLTQACDKY-KQQNLPHLTV-VRKKLERREEIPNTGDRIFYVL 967
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,106,361
Number of Sequences: 539616
Number of extensions: 24164637
Number of successful extensions: 73286
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 71775
Number of HSP's gapped (non-prelim): 1008
length of query: 1517
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1386
effective length of database: 120,879,763
effective search space: 167539351518
effective search space used: 167539351518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)