Query 000430
Match_columns 1517
No_of_seqs 444 out of 1738
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:22:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000430.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_206-210//hhsearch_pdb/000430hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 1.0 1 1 1302.8 75.6 817 332-1280 44-916 (919)
2 2gv9_A DNA polymerase; polymer 1.0 1 1 1193.6 65.3 851 351-1277 137-1139(1193)
3 1qht_A Protein (DNA polymerase 1.0 1 1 1091.3 58.7 737 338-1280 1-755 (775)
4 3k59_A POL II, DNA polymerase 1.0 1 1 1051.3 62.4 736 335-1281 6-779 (786)
5 1s5j_A DNA polymerase I; repli 1.0 1 1 995.8 36.8 764 331-1272 10-822 (847)
6 3qex_A DNA polymerase, GP43; d 1.0 1 1 914.1 44.4 638 549-1290 105-893 (903)
7 3flo_B DNA polymerase alpha ca 1.0 1 1 399.5 15.8 187 1304-1515 2-202 (206)
8 1noy_A Protein (DNA polymerase 1.0 1 1 354.3 17.3 263 549-842 103-382 (388)
9 2py5_A DNA polymerase; protein 1.0 1 1 280.5 21.9 367 644-1116 44-534 (575)
10 1n5g_A 38-MER of DNA polymeras 1.0 1 1 66.9 -4.5 37 1402-1444 1-38 (38)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1302.80 Aligned_cols=817 Identities=25% Similarity=0.386 Sum_probs=663.6
Q ss_pred CCCEEEEEEEEECCCC-----CCCCCEEEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCC---CCCHHHHHHHHHHHH
Q ss_conf 9917599993002335-----78896899988962399215799998231235999628999---990467776674432
Q 000430 332 DGSLPFYILDAHEQLS-----GANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPL---FQTDEIMKLEKDAEE 403 (1517)
Q Consensus 332 ~~~l~fywlDa~E~~~-----~~~~g~i~LFGKv~~~~~~~Sccv~V~ni~R~ly~lPr~~~---~~~~~~~~~~~~~~~ 403 (1517)
.+.+.|++||+.+.+. .....+|.|||++.+| .|+||+|+|+.+||| ++.+.. +...++.+
T Consensus 44 ~~~~~f~~ld~~~~~~~~~~~~~~~~virlfg~t~~G---~sv~v~V~gf~PYFY-v~~~~~~~~~~~~~~~~------- 112 (919)
T 3iay_A 44 LYDISFQQIDAEQSVLNGIKDENTSTVVRFFGVTSEG---HSVLCNVTGFKNYLY-VPAPNSSDANDQEQINK------- 112 (919)
T ss_dssp TCCEEEEEEEEEEEECSSSCBTTBCEEEEEEEEETTS---CEEEEEEESCCCEEE-EECCSSGGGGCHHHHHH-------
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCC---CEEEEEECCCCCEEE-EECCCCCCCCCHHHHHH-------
T ss_conf 7843799984234444565465982699999880899---989999878388799-97678644345667999-------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEC--CCCCCCCCCCC-C-
Q ss_conf 0476478999989998455799997762187336999999731122789989972138999833--89999975777-8-
Q 000430 404 SRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYP--FKDPPLPADLK-G- 479 (1517)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~v~~ei~~~~~~~~i~~~~~k~v~r~yaFe~~~vp~~~~~~lkv~y~--~~~p~lp~~l~-G- 479 (1517)
+.+.+ ...+ .-.+..+.....+..|.|... ....|+||... ...+.+...+. |
T Consensus 113 -------~~~~L-----------~~~~-~~~v~~ve~v~K~~l~gy~~~----~~~~~lKI~~~~p~~v~~~r~~l~~g~ 169 (919)
T 3iay_A 113 -------FVHYL-----------NETF-DHAIDSIEVVSKQSIWGYSGD----TKLPFWKIYVTYPHMVNKLRTAFERGH 169 (919)
T ss_dssp -------HHHHH-----------HTTT-TTCEEEEEEEEEEESSCCSCS----CCEEEEEEEESSTTHHHHHHHHHHHSC
T ss_pred -------HHHHH-----------HHHH-CCCCEEEEEEEEECCCCCCCC----CCEEEEEEEECCHHHHHHHHHHHHCCC
T ss_conf -------99999-----------8750-477107999964446457889----834799999819999999999987066
Q ss_pred C-------CCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 8-------52113587922787885416987865689821--53379999855431899970799720026888878999
Q 000430 480 E-------NFCSLLGTHSSALELFLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550 (1517)
Q Consensus 480 ~-------tfs~vfgtn~s~lErFli~rkI~Gp~Wl~i~~--~~~~~~~~~~S~Ck~E~~v~~~~~i~~~~~~~~~~~~P 550 (1517)
. ....+|| |+++++||+||++|+||||+++++ +..+....+.|||++|+.|+.++.+.+ ....++..+|
T Consensus 170 ~~~~~~~~~~~~~yE-dI~~~~RfliD~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~-~~~~~~~~~P 247 (919)
T 3iay_A 170 LSFNSWFSNGTTTYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAH-PAEGDWSHTA 247 (919)
T ss_dssp CCGGGSSTTCCCCBC-CCCHHHHHHHHHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEE-CSSGGGSCCC
T ss_pred CCCCCCCCCCCCCCC-CCCHHHHHEEECCCCCCEEEEEECCCCEECCCCCCCCCEEEEEEEECCCCCCC-CCCCCCCCCC
T ss_conf 543433556742035-87767664044588653699995574011146678531038999613333436-5544456799
Q ss_pred CCEEEEEEEEEC-----CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCC
Q ss_conf 935999996525-----788878663899988875065456854655556899642079974279965677630211012
Q 000430 551 PVTVTAINLKTV-----FNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625 (1517)
Q Consensus 551 pL~ilSldIet~-----~n~~~~~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~~~ 625 (1517)
||++|||||||. ||+++ .++|+|||++++..... .+ .....|++.+.
T Consensus 248 plrilSfDIEt~~~~g~fP~~~-~D~Ii~IS~~v~~~g~~-~~---------~~r~~f~l~~~----------------- 299 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPE-YDPVIQIANVVSIAGAK-KP---------FIRNVFTLNTC----------------- 299 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTT-TCCEEEEEEEEEETTCS-SC---------SEEEEEEESCC-----------------
T ss_pred CCEEEEEEEEECCCCCCCCCCC-CCCEEEEEEEEECCCCC-CC---------CEEEEEEECCC-----------------
T ss_conf 8469999999877899898988-78289999998527986-43---------22579972587-----------------
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-C-CCCC
Q ss_conf 6889971396046499999999999984299879823557546999999999849999752112655568775-3-4447
Q 000430 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-K-LRKG 703 (1517)
Q Consensus 626 ~~~~g~~v~~~~~sEr~LL~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~lkI~~~~wsriGRlkr~~~p-k-~~~~ 703 (1517)
....|..|..+ ++|++||.+|+++|+++|||||+|||+.+||||||++||..||++. |+++||+++..+. + ...+
T Consensus 300 ~~~~~~~V~~~-~sE~eLL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~--~~~lGR~~~~~~~~~~~~~~ 376 (919)
T 3iay_A 300 SPITGSMIFSH-ATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVND--FPYFGRLKTVKQEIKESVFS 376 (919)
T ss_dssp CCBTTBEEEEE-SSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTT--CSCCSSBTTCCCCBCCEEEE
T ss_pred CCCCCCEEEEC-CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCC--HHHHCCCCCCCCCCCCCCCC
T ss_conf 77799869977-9999999999999887199999960786678999999999809982--56526456766553345445
Q ss_pred CCCCCCCCCCCCEEEECCEEEEECHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCC-HHHHHHHHHHHHH
Q ss_conf 654458999994133101399522798731014689898999998607988855955499999636-4599999999986
Q 000430 704 RTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELIEYGETD 782 (1517)
Q Consensus 704 ~~~fg~~~~~~~~~~i~GRli~Dl~~~~ke~~k~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~-~~l~~L~~Y~~~D 782 (1517)
++.||.+... ...++||++||+|.++++.+++.||+|++||+++||.+|.++++++|..+|..+ ..+.+++.||++|
T Consensus 377 ~~~~g~~~~~--~~~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~D 454 (919)
T 3iay_A 377 SKAYGTRETK--NVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKD 454 (919)
T ss_dssp ETTTEEEEEC--CBCCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--EEEECCEEEEEHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 3311455552--36876849988199997536878899999999965668888998999999850905599999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89889988540451248777520278324430163210247867899884482035952034675531102578866654
Q 000430 783 AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862 (1517)
Q Consensus 783 a~l~~~L~~kl~ilpL~~qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~~~r~~~~~e~~~ 862 (1517)
|+++++|+.++++++++.++++|+|++|++++..|++.++|++|+|+||++|||+|++...
T Consensus 455 a~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ves~Llr~a~~~~~ilP~~~~~------------------- 515 (919)
T 3iay_A 455 AYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQ------------------- 515 (919)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHHHHHHHHHHTTEECBCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCC-------------------
T ss_conf 9999999999733677999988709987996406663999999999874077457786444-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC--------
Q ss_conf 111223467788898755454689998778843441456531232899622575324898727651343249--------
Q 000430 863 VEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-------- 934 (1517)
Q Consensus 863 ~~~~~~~d~~~~~~~~~~~~~~~~kk~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tTv~~~-------- 934 (1517)
..+.+|+||+|++|++|+|++||++|||+|||||||++|||||||+++.
T Consensus 516 -----------------------~~~~~y~Gg~V~eP~~G~y~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~~~~ 572 (919)
T 3iay_A 516 -----------------------ASDDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL 572 (919)
T ss_dssp -----------------------CCSSCCCCCCBCCCCCEEECSCEEEEEETTHHHHHHHHTTCSGGGEECHHHHHHTTC
T ss_pred -----------------------CCCCCCCCCEEECCCCCCEECCEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHCCC
T ss_conf -----------------------665567787885478873656589987332034789860748542136410643379
Q ss_pred -CCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -999845688-------8886677288999999999999999742012-5787659999998631132235654345656
Q 000430 935 -PDGLVPHLP-------SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005 (1517)
Q Consensus 935 -~~~~v~~~P-------~~~~~GilP~iL~~Lv~~R~~vK~~mK~~~~-~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srf 1005 (1517)
+++++...| .+.++||||++|+.|++.|+++|+.||++++ .++.+||++|+|+|++|||+|||+|++++||
T Consensus 573 ~~~~~~~~~p~g~~f~~~~~~~gilp~~l~~ll~~R~~~K~~mk~~~d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~~r~ 652 (919)
T 3iay_A 573 KIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKL 652 (919)
T ss_dssp CBTTTEEECTTSCEEECTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred CCCCCEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98766465799857843677787239999999999999999875367868999889999863410134344135426756
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 7877899999997999999999998416--------9359995054003523866299999999999999861362-168
Q 000430 1006 YAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYK-CLE 1076 (1517)
Q Consensus 1006 y~~~lA~~VT~~GReiL~~t~~~ve~~~--------g~~VIYGDTDSimI~~~~~d~~e~~~ig~~i~~~Vn~~~~-~le 1076 (1517)
||.++|++||++||++|+.|++++|+.+ |++|||||||||||+++..+.++++++|++++++||+.|+ +++
T Consensus 653 ~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~~~~~g~~~~~~v~~~~~~~i~ 732 (919)
T 3iay_A 653 PCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPIN 732 (919)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 79889999999989999999999998631013787884999983770699718989999999999999999874788879
Q ss_pred EEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 72110120244202430159995412882110588953013307624757999999999993269988999999999999
Q 000430 1077 IDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMK 1156 (1517)
Q Consensus 1077 le~E~vy~~llLl~KKrYa~l~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vl~~iL~~~~~e~~v~~i~~~l~~ 1156 (1517)
||||++|.++||++||||||+.++. +...+++++||+|+||||||+|+|++++.+|+.||.+++++.++++++ +
T Consensus 733 le~E~vy~~~ll~~KKrYag~~~~~--~~~~~~~~~KGie~vRrD~~~~~k~~~~~~l~~ll~~~~~~~~~~~~~----~ 806 (919)
T 3iay_A 733 LEFEKAYFPYLLINKKRYAGLFWTN--PDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVR----E 806 (919)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEESS--SSSCCEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH----H
T ss_pred EEEEEEEHHHHHHCCCCEEEEEECC--CCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----H
T ss_conf 9994401656523026268998416--887762777767888477069999999999999974799999999999----9
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999648888444677303588998899989935799999987509998899999368999931699989876743333
Q 000430 1157 VQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRA 1236 (1517)
Q Consensus 1157 ~~~~l~~g~v~l~~lvI~k~LtK~p~~Y~~~k~~PHV~vA~rl~~~g~~~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~RA 1236 (1517)
...+|++|++|+++|+|+|+|+| +|+. .+|||++|+||++++ +..++.||+|+|||+ ++ +.++++||
T Consensus 807 ~~~~l~~~~~~~~~lvi~k~l~k---~Y~~--~~phv~~A~r~~~~~-~~~~~~G~rI~YVi~-g~------~~~~~~ra 873 (919)
T 3iay_A 807 TINDILHNRVDISKLIISKTLAP---NYTN--PQPHAVLAERMKRRE-GVGPNVGDRVDYVII-GG------NDKLYNRA 873 (919)
T ss_dssp HHHHHHTTCSCGGGGCEEEECCS---CCSS--CCHHHHHHHHHHHHH-SCCCCTTSEEEEEEB-CS------SSCGGGCE
T ss_pred HHHHHHCCCCCHHHEEEEEECCC---CCCC--CCHHHHHHHHHHHHC-CCCCCCCCEEEEEEE-CC------CCCHHHHC
T ss_conf 99999828999899188410155---7798--882999999999746-989999999899998-89------97445313
Q ss_pred CCCHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCC-CHHHH
Q ss_conf 691555406997788947998507438899841024899-97899
Q 000430 1237 RHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGT-SPERL 1280 (1517)
Q Consensus 1237 ~~P~ev~~~~~~l~iD~eYYl~~QI~P~v~Rl~~~I~g~-~~~~l 1280 (1517)
++|.++++++ ++||++|||++||+||++|||+||+|+ .++.|
T Consensus 874 ~~p~~~~~~~--~~iD~~yYi~~qi~ppl~Ri~~~i~g~~~~~~~ 916 (919)
T 3iay_A 874 EDPLFVLENN--IQVDSRYYLTNQLQNPIISIVAPIIGDKQANGM 916 (919)
T ss_dssp ECHHHHHHTT--CCBCHHHHHHHTTHHHHHHHHHHHHCHHHHHHH
T ss_pred CCHHHHHCCC--CCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHH
T ss_conf 6888874359--887779998834687999998875499644654
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=1.00 E-value=1 Score=1193.58 Aligned_cols=851 Identities=20% Similarity=0.312 Sum_probs=641.7
Q ss_pred CCEEEEEEEEECCCCEEEEEEEEECCEEEEEEEECCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9689998896239921579999823123599962899--99904677766744320476478999989998455799997
Q 000430 351 MGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGP--LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIAN 428 (1517)
Q Consensus 351 ~g~i~LFGKv~~~~~~~Sccv~V~ni~R~ly~lPr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ei~~ 428 (1517)
..+|.|||++.+| .|+||+|+|+.+|||+...+. .+... ...++...+++. +..
T Consensus 137 g~vi~l~g~t~~G---~sv~v~v~~f~pYFYv~~~~~~~~~~~~--------------~~~~~~~~l~~~-------l~~ 192 (1193)
T 2gv9_A 137 GTVITLLGLTPEG---HRVAVHVYGTRQYFYMNKEEVDRHLQCR--------------APRDLCERMAAA-------LRE 192 (1193)
T ss_dssp EEEEEEEEECSSC---CEEEEEEECCCEEEEEEHHHHHHTTCCC--------------SHHHHHHHHHHH-------HHH
T ss_pred CCEEEEEEECCCC---CEEEEEECCCCEEEEEECCCCCCCCCCC--------------CHHHHHHHHHHH-------HHH
T ss_conf 8789999983899---9799998787749999778742101332--------------178999999999-------975
Q ss_pred HH----HCCCEEEEEEEEEEEE--CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHC
Q ss_conf 76----2187336999999731--1227899899721389998338999997577788--52113587922787885416
Q 000430 429 QL----LNLNVSNYIVSPVKRR--YAFGQAEIPAGENYVLKINYPFKDPPLPADLKGE--NFCSLLGTHSSALELFLVKR 500 (1517)
Q Consensus 429 ~~----~~~~i~~~~~k~v~r~--yaFe~~~vp~~~~~~lkv~y~~~~p~lp~~l~G~--tfs~vfgtn~s~lErFli~r 500 (1517)
.. ....-..+.+..|+|. |.|+ .. ...|+||... .|..-..++.. ....+||+|+++++|||||+
T Consensus 193 ~~~~~~~~~~~~~~~ve~V~k~~l~~~~----~~-~~~~~ki~~~--~p~~v~~lr~~~~~~~~~~E~dI~~~~RfliD~ 265 (1193)
T 2gv9_A 193 SPGASFRGISADHFEAEVVERTDVYYYE----TR-PALFYRVYVR--SGRVLSYLCDNFCPAIKKYEGGVDATTRFILDN 265 (1193)
T ss_dssp SSSCCTTCCCGGGCEEEEEEEEESSCSS----CC-CEEEEEEEES--CHHHHHHHHHHTCSSSCEESTTCCHHHHHHHHS
T ss_pred HCCCCCCCCCCCCCEEEEEEEEECCCCC----CC-CCEEEEEECC--CHHHHHHHHHHCCCCCEEEECCCCHHHEEEEEC
T ss_conf 2034445656675048999976035567----77-6428999601--899999998604577437753675251576774
Q ss_pred -CCCCCEEEEEECC------CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEC--------CCC
Q ss_conf -9878656898215------3379999855431899970799720026888878999935999996525--------788
Q 000430 501 -KVKGPSWLSISKF------SSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTV--------FNK 565 (1517)
Q Consensus 501 -kI~Gp~Wl~i~~~------~~~~~~~~~S~Ck~E~~v~~~~~i~~~~~~~~~~~~PpL~ilSldIet~--------~n~ 565 (1517)
+|+|+||++++.. ......++.|||++|+.|..+ ++.+. + +...+|||++|||||||. ||+
T Consensus 266 ~~i~~~~W~~i~~~~~g~~~~~r~~~~~~s~c~~E~~~~~~-~~~~~--~-~~~~~P~lrvlsfDIE~~~~g~~~~~FP~ 341 (1193)
T 2gv9_A 266 PGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTAD-NLAIE--G-GMSDLPAYKLMCFDIECKAGGEDELAFPV 341 (1193)
T ss_dssp TTCCSSEEEEECCBTTTBCCEECCGGGCSBSCSEEEEEEGG-GEEEC--C-SCCCCCCCEEEEEEEEEECCSSCTTSCCC
T ss_pred CCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECC-CCEEC--C-CCCCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 89887533997225666401220432457777558999746-53674--6-65789985599999897356777778998
Q ss_pred CCC-CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCHHHHH
Q ss_conf 878-6638999888750654568546555568996420799742799656776302110126889971396046499999
Q 000430 566 RQD-VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALL 644 (1517)
Q Consensus 566 ~~~-~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~~~~~~~g~~v~~~~~sEr~LL 644 (1517)
+++ .++|+|||++++.... +.. . .+++..+..+.+|.+|....+... ..|..|+.+ .+|++||
T Consensus 342 a~~~~D~Ii~IS~~~~~~~~-~~~------------~-~~~v~~l~~~~~~~~f~~~~k~~~-~~~~~V~~~-~sE~eLL 405 (1193)
T 2gv9_A 342 AGHPEDLVIQISCLLYDLST-TAL------------E-HVLLFSLGSCDLPESHLNELAARG-LPTPVVLEF-DSEFEML 405 (1193)
T ss_dssp TTSTTSEEEEEEEEEEETTT-CCE------------E-EEEEEEESCCCCCHHHHHHHHHTT-CCCCEEEEE-SSHHHHH
T ss_pred CCCCCCCEEEEEEEEEECCC-CCC------------C-EEEEEECCCCCCCCHHHHHCCCCC-CCCCEEEEC-CCHHHHH
T ss_conf 65567855889889974267-776------------4-699997798678503332011136-788559965-9999999
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCE
Q ss_conf 99999998429987982355754699999999-98499997521126555687753-44476544589999941331013
Q 000430 645 NRLMIELYKLDSDVLVGHNISGFDLDVLLHRA-QVCRVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSGASPGIMSCIAGR 722 (1517)
Q Consensus 645 ~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra-~~lkI~~~~wsriGRlkr~~~pk-~~~~~~~fg~~~~~~~~~~i~GR 722 (1517)
.+|+++|+++|||||+|||+.+||||||++|+ ..++++.+ .+||+++..+++ +..++..|+.. ....+.||
T Consensus 406 ~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~---~~GRl~r~~~~k~~~~~~~~f~~~----~~~~i~GR 478 (1193)
T 2gv9_A 406 LAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLD---GYGRMNGRGVFRVWDIGQSHFQKR----SKIKVNGM 478 (1193)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCT---TTSSBSSSCCEEECC--------------CEEETTB
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHH---HHCCCCCCCCCEEECCCCCCCCCC----CEEEECCE
T ss_conf 99999988529989997488676289999999997398857---726335677510442666554666----33887175
Q ss_pred EEEECHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf 995227987310146898989999986079888559554999996364-599999999986898899885404-512487
Q 000430 723 LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE-SLMELIEYGETDAWLSMELMFHLS-VLPLTR 800 (1517)
Q Consensus 723 li~Dl~~~~ke~~k~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~~-~l~~L~~Y~~~Da~l~~~L~~kl~-ilpL~~ 800 (1517)
++||+|.++++.+++.||+|++||+++||.+|.++++++|..+|.+++ .+..++.||++|++++++|+.++. .+.+ .
T Consensus 479 v~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~~~lel-~ 557 (1193)
T 2gv9_A 479 VNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLEL-S 557 (1193)
T ss_dssp EEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-H
T ss_pred EEEHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 762699999987356888989999998366878899999999997297468999999789999999999999999989-9
Q ss_pred HHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHH--HHH--CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 775202783244301632102478678998844820359520346755--311--0257886665411122346778889
Q 000430 801 QLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK--MAK--QRSNHGVEDRNVEELTNEDANFDND 876 (1517)
Q Consensus 801 qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~--~~~--~r~~~~~e~~~~~~~~~~d~~~~~~ 876 (1517)
++++|+|++|+++|.+|++.++|++|||++|++|||+|++........ ... .... ..+.. +.+. ..+.+..
T Consensus 558 elarl~gi~~~~vl~~G~~irves~Ll~~a~~~~~ilP~k~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~~ 632 (1193)
T 2gv9_A 558 AVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAR-EDEER-PEEE---GEDEDER 632 (1193)
T ss_dssp HHHHHHTSCGGGTTSSCSTHHHHHHHHHHHHHHTEECBCCC---------------------------------------
T ss_pred HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCC---CCCCCCC
T ss_conf 99998198889974076389999999999997998078766432223333334432234-44433-2224---6431011
Q ss_pred C--CC---CC--CCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCC--------CCCC
Q ss_conf 8--75---54--54689998778843441456531232899622575324898727651343249999--------8456
Q 000430 877 T--SH---ND--HRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG--------LVPH 941 (1517)
Q Consensus 877 ~--~~---~~--~~~~~kk~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tTv~~~~~~--------~v~~ 941 (1517)
. .. .+ ....+++.+|+||+|+||++|||++||++|||+|||||||++|||||||++..+++ +...
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~Y~Gg~VleP~~Gly~~pV~vLDF~SLYPSII~a~Nlc~sTl~~~~~~~~~l~~~~dy~~ 712 (1193)
T 2gv9_A 633 EEGGGEREPEGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLE 712 (1193)
T ss_dssp --------------------------CCCCCCEEECSCEEEEEEETHHHHHHHHTTCCTTTEESCSTTSTTCCTTTTEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCEEECCEEEEECCCCCHHHHHHHCCCCCEECCCCHHHCCCCCCCCEEE
T ss_conf 34444456201210013234557877860578806675898861231418999735785213357101004787555367
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf ----------8888866772889999999999999997420125787659999998631132235654345656787789
Q 000430 942 ----------LPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011 (1517)
Q Consensus 942 ----------~P~~~~~GilP~iL~~Lv~~R~~vK~~mK~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA 1011 (1517)
.....++|+||.+|+.|+++|+++|++||.+++.++.+||.+|+|+|++|||+|||+|++++||||+++|
T Consensus 713 ~~~~~~~~~fvk~~~~~gilp~lL~~ll~~Rk~~K~~mk~~~~~~~~llD~~QlAlKi~aNS~YG~~G~~~grlpc~~iA 792 (1193)
T 2gv9_A 713 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVA 792 (1193)
T ss_dssp EECSSSEEEEECTTTSCCHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCCHHHH
T ss_pred ECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHH
T ss_conf 55799821311576656468999999999999999766238988999999999998875422113364405435687889
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------------CCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999979999999999984----------------------16935999505400352386629999999999999986
Q 000430 1012 ELITQQGREILRSTVDLVQN----------------------NLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVN 1069 (1517)
Q Consensus 1012 ~~VT~~GReiL~~t~~~ve~----------------------~~g~~VIYGDTDSimI~~~~~d~~e~~~ig~~i~~~Vn 1069 (1517)
++||++||+||++|+++||+ .+|++|||||||||||+++..+.++++++|.+++++||
T Consensus 793 ~sVT~~GR~~L~~tk~~IE~~~~~~~~l~~~f~~~~~~~~~~~~g~~VIYGDTDSvfV~~~~~~~~~~~~~g~~i~~~i~ 872 (1193)
T 2gv9_A 793 ATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKMASHIS 872 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHCGGGGGGBCSSCCEEEEEEECSSEEEEEEETBCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999989999999999986510023444421221123455231111034067732786489998999999999999999
Q ss_pred CC-C-CEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 13-6-216872110120244202430159995412882110588953013307624757999999999993269988999
Q 000430 1070 KK-Y-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVV 1147 (1517)
Q Consensus 1070 ~~-~-~~lele~E~vy~~llLl~KKrYa~l~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vl~~iL~~~~~e~~v 1147 (1517)
+. | .+++||+|++|++|||++||||||+. .+|+ +++||+|+||||||+|+|++++.+|+.||.+.+.++++
T Consensus 873 ~~~~~~~i~LE~Ekvy~~~ll~~KKRYag~~---~~g~----l~~KG~e~vRRD~~~lvk~~~~~vl~~ll~~~d~~~a~ 945 (1193)
T 2gv9_A 873 RALFLPPIKLECEKTFTKLLLIAKKKYIGVI---YGGK----MLIKGVDLVRKNNCAFINRTSRALVDLLFYDDTVSGAA 945 (1193)
T ss_dssp HHHCCTTCEEEEEEEEEEEEEEETTEEEEEE---TTSC----EEEESCCSCCTTSCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHCCCCCEEEEECEEEHHHHHHCCCEEEEEE---CCCE----EEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 7516777899966141877533046499996---5987----68888731058567999999999999997699989999
Q ss_pred HH--------------------HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99--------------------9999999999996488884446773035889988999899357999999875099988
Q 000430 1148 ES--------------------IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTG 1207 (1517)
Q Consensus 1148 ~~--------------------i~~~l~~~~~~l~~g~v~l~~lvI~k~LtK~p~~Y~~~k~~PHV~vA~rl~~~g~~~~ 1207 (1517)
+. +++++.+...+|++|++++++|+|+|+|+|+|++|++ +++|||++|+||++++. ..
T Consensus 946 ~~v~~~~~~e~~~~~~~~~~~~i~~~l~~~~~~l~~~~v~i~~lvitk~LsK~~~~Y~~-~~~phv~vA~rl~~~~~-~~ 1023 (1193)
T 2gv9_A 946 AALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTAELSRHPRAYTN-KRLAHLTVYYKLMARRA-QV 1023 (1193)
T ss_dssp HHGGGSCHHHHHHSCCCGGGHHHHHHHHHHHHHHHSSCSCCGGGCBCC--------------------------------
T ss_pred HHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCC-CCCCHHHHHHHHHHHCC-CC
T ss_conf 98763011333201314678899999999999987499889998777652888567422-57728999999998558-88
Q ss_pred CCCCCEEEEEEEECCCCCC-----------------C--------------------------------CCCCCCCCCCC
Q ss_conf 9999936899993169998-----------------9--------------------------------87674333369
Q 000430 1208 CSAGDTVPYIICCEQGTSS-----------------G--------------------------------SSVGIAQRARH 1238 (1517)
Q Consensus 1208 ~~~Gd~I~YVI~~~~~~~~-----------------~--------------------------------~~~~~~~RA~~ 1238 (1517)
++.||+|+|||+.+..... + .+..++++|++
T Consensus 1024 p~~GdrI~YVI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aed 1103 (1193)
T 2gv9_A 1024 PSIKDRIPYVIVAQTREVEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSHADPPGGASKPRKLLVSELAED 1103 (1193)
T ss_dssp -CCTTTSCBEEBCC--------------------------------------------------------CCCSSCCEEC
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 99999899999979977641001012321011235687544433455544565544333455322233441032322258
Q ss_pred CHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCH
Q ss_conf 155540699778894799850743889984102489997
Q 000430 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277 (1517)
Q Consensus 1239 P~ev~~~~~~l~iD~eYYl~~QI~P~v~Rl~~~I~g~~~ 1277 (1517)
|.+|++++ ++||++||+++ +..|+.|+++||.|.+.
T Consensus 1104 p~yv~~~~--~~i~~~yY~~~-~~~~~~~~~~~~~~~~~ 1139 (1193)
T 2gv9_A 1104 PAYAIAHG--VALNTDYYFSH-LLGAACVTFKALFGNNA 1139 (1193)
T ss_dssp HHHHHHTT--CCBCHHHHHHH-HHHHHHHHSGGGGTTCH
T ss_pred CHHHHHCC--CCCCHHHHHHH-HHHHHHHHHHHHCCCCH
T ss_conf 18886469--86557999987-63078889998617641
No 3
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=1.00 E-value=1 Score=1091.26 Aligned_cols=737 Identities=26% Similarity=0.407 Sum_probs=595.5
Q ss_pred EEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99930023357889689998896239921579999823123599962899999046777667443204764789999899
Q 000430 338 YILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQD 417 (1517)
Q Consensus 338 ywlDa~E~~~~~~~g~i~LFGKv~~~~~~~Sccv~V~ni~R~ly~lPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1517)
|.||+.++.. .+..+|+|||.. .| .|.|++|+++.+|||..+.+ .+....
T Consensus 1 ~ll~~~y~~~-~~~~~i~~~~~~-~g---~~~~~~~~~f~PYfyv~~~~-~~~~~~------------------------ 50 (775)
T 1qht_A 1 MILDTDYITE-NGKPVIRVFKKE-NG---EFKIEYDRTFEPYFYALLKD-DSAIED------------------------ 50 (775)
T ss_dssp CEEEEEEEEE-TTEEEEEEEEEE-TT---EEEEEEECCCCCEEEEEESC-GGGHHH------------------------
T ss_pred CEEEEEEECC-CCCEEEEEEEEE-CC---EEEEEEECCCCEEEEEECCC-CCCHHH------------------------
T ss_conf 9599999636-998799999820-99---89999977983599997899-756899------------------------
Q ss_pred HHHHHHHHHHHHHHC--CCEE--EEEEEEEEEECCCCCCCCCCCCEEEEEEEEC--CCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 984557999977621--8733--6999999731122789989972138999833--89999975777-885211358792
Q 000430 418 VALGLKTEIANQLLN--LNVS--NYIVSPVKRRYAFGQAEIPAGENYVLKINYP--FKDPPLPADLK-GENFCSLLGTHS 490 (1517)
Q Consensus 418 ~~~~v~~ei~~~~~~--~~i~--~~~~k~v~r~yaFe~~~vp~~~~~~lkv~y~--~~~p~lp~~l~-G~tfs~vfgtn~ 490 (1517)
+..+... -+.. -.+.. |+|++ ++ ....++||... ...+.+...++ ......+||+|+
T Consensus 51 --------~~~~~~~~~~~~~~~~~~~~-v~k~~-~g------~~~~~~ki~~~~~~~~~~~r~~l~~~~~~~~~~E~dI 114 (775)
T 1qht_A 51 --------VKKVTAKRHGTVVKVKRAEK-VQKKF-LG------RPIEVWKLYFNHPQDVPAIRDRIRAHPAVVDIYEYDI 114 (775)
T ss_dssp --------HTTCEEEETTEEEECCEEEE-EEEEE-TT------EEEEEEEEECSCTTHHHHHHHHHHTSTTEEEEESCSS
T ss_pred --------HHHHHHHHCCCCCCEEEEEE-EEEEE-CC------CCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf --------99999872578754178999-97556-48------8835999998699999999999974898401574367
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECC---CCCC
Q ss_conf 2787885416987865689821533799998554318999707997200268888789999359999965257---8887
Q 000430 491 SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF---NKRQ 567 (1517)
Q Consensus 491 s~lErFli~rkI~Gp~Wl~i~~~~~~~~~~~~S~Ck~E~~v~~~~~i~~~~~~~~~~~~PpL~ilSldIet~~---n~~~ 567 (1517)
.+..||++|++|.++.| .||++++||||||.. +++
T Consensus 115 ~~~~r~lid~~i~~~~~-----------------------------------------~~~l~ilsfDIEt~~~~~p~~- 152 (775)
T 1qht_A 115 PFAKRYLIDKGLIPMEG-----------------------------------------DEELTMLAFAIATLYHEGEEF- 152 (775)
T ss_dssp CHHHHHHHHTTCCTTCS-----------------------------------------CCCCCEEEEEEEECCCTTCCT-
T ss_pred CHHHEEEEECCCCCCCC-----------------------------------------CCCCEEEEEEEEECCCCCCCC-
T ss_conf 74751457758455688-----------------------------------------888679999999867999987-
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 86638999888750654568546555568996420799742799656776302110126889971396046499999999
Q 000430 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647 (1517)
Q Consensus 568 ~~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~~~~~~~g~~v~~~~~sEr~LL~~F 647 (1517)
..++|++||+...... ..++. + +. .+..+. .+++|++||..|
T Consensus 153 ~~d~Ii~Is~~~~~~~-----------------~~~t~-~-------~i------------~~~~v~-~~~~E~~LL~~f 194 (775)
T 1qht_A 153 GTGPILMISYADGSEA-----------------RVITW-K-------KI------------DLPYVD-VVSTEKEMIKRF 194 (775)
T ss_dssp TCSCEEEEEEECSSCE-----------------EEEES-S-------CC------------CCSSEE-ECSCHHHHHHHH
T ss_pred CCCCEEEEEEEECCCC-----------------EEEEE-C-------CC------------CCCCEE-ECCCHHHHHHHH
T ss_conf 7781899999846997-----------------46751-2-------55------------666538-759999999999
Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 99998429987982355754699999999984999975211265556877534447654458999994133101399522
Q 000430 648 MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT 727 (1517)
Q Consensus 648 l~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~lkI~~~~wsriGRlkr~~~pk~~~~~~~fg~~~~~~~~~~i~GRli~Dl 727 (1517)
+++|+++|||||+|||+.+||||||.+|+..+|++. .+||.++ .|++.+++.. ....++||++||+
T Consensus 195 ~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~----~lgR~~~--~~~~~~~g~~--------~~~~i~Gr~~lDl 260 (775)
T 1qht_A 195 LRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKF----TLGRDGS--EPKIQRMGDR--------FAVEVKGRIHFDL 260 (775)
T ss_dssp HHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCC----CCSTTSC--CCEEEEETTE--------EEEECTTSEEEEH
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCC----CCCCCCC--CCCEEECCCE--------EEEEECCEEEEEH
T ss_conf 999986399999996788763899999999809993----0156777--6734105843--------5677667499878
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 79873101468989899999860798885595549999963645999999999868988998854045124877752027
Q 000430 728 FLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807 (1517)
Q Consensus 728 ~~~~ke~~k~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~~~l~~L~~Y~~~Da~l~~~L~~kl~ilpL~~qLt~IaG 807 (1517)
+..+++.+++.||+|++||+++||.+|.++++.+|.++|.+++.+.++++||++||.++++|+. +++|++.+|++++|
T Consensus 261 ~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~--~~~~~~~~la~i~g 338 (775)
T 1qht_A 261 YPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGR--EFFPMEAQLSRLIG 338 (775)
T ss_dssp HHHHHHHSCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC
T ss_conf 9999875576768899999998399977659999999986593188999999999999999987--43189999999868
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83244301632102478678998844820359520346755311025788666541112234677888987554546899
Q 000430 808 NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887 (1517)
Q Consensus 808 n~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~~~r~~~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~k 887 (1517)
+++..++..++++++|++|||+++++|||+|++...... .++
T Consensus 339 ~~~~~v~r~~~~~~ve~~Ll~~~~~~~~i~P~~~~~~~~--------------------------------------~~~ 380 (775)
T 1qht_A 339 QSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDEREL--------------------------------------ARR 380 (775)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHTTBCCCCCCCHHHH--------------------------------------HHT
T ss_pred CCCHHCEECCCHHHHHHHHHHHHHHCCEECCCCCCHHHH--------------------------------------HCC
T ss_conf 980440432428999999768897598837778743443--------------------------------------044
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCC---CCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 9877884344145653123289962257532489872765134324999984---5688---888667728899999999
Q 000430 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLV---PHLP---SSKTTGVLPELLKNLVQR 961 (1517)
Q Consensus 888 k~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tTv~~~~~~~v---~~~P---~~~~~GilP~iL~~Lv~~ 961 (1517)
+++|+||+|++|++|+|++ |++|||+|||||||++|||||+|+++....+. |..+ ++.++|++|++|++|++.
T Consensus 381 ~~~y~Gg~V~eP~~G~y~~-v~~lDF~SLYPSIi~~~nl~~~t~~~~~~~~~~~~~~~~~~f~~~~~g~lp~~l~~l~~~ 459 (775)
T 1qht_A 381 RGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVGHKFCKDFPGFIPSLLGDLLEE 459 (775)
T ss_dssp TTCCCCCCBCCCCCSCEEE-EEEEECSSHHHHHHHHTTCSTTTBTCTTCSCEEECTTTCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEECCCCCCCCC-EEECCHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 4456785575166784334-254122013178998608995103456521255688667412255688764999999999
Q ss_pred HHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999742012-578765999999863113223565434565678778999999979999999999984169359995
Q 000430 962 RRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG 1040 (1517)
Q Consensus 962 R~~vK~~mK~~~~-~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~VT~~GReiL~~t~~~ve~~~g~~VIYG 1040 (1517)
|+++|+.||++++ .++.+||.+|+|+|++|||+|||+|++++||||+++|++||++||++|+.|++.+++.+|++||||
T Consensus 460 R~~~K~~~k~~~~~~~~~~~d~~Q~A~Ki~~NS~YG~~g~~~~r~~~~~~A~~vT~~Gr~~i~~~~~~i~~~~g~~Viyg 539 (775)
T 1qht_A 460 RQKIKRKMKATVDPLEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYA 539 (775)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTHHHHHHCTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999986328997999999999875425210230314444667678889999899999999999999998639768996
Q ss_pred ECCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEE
Q ss_conf 05400352386629999999999999986136-21687211012024420243015999541288211058895301330
Q 000430 1041 DTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVR 1119 (1517)
Q Consensus 1041 DTDSimI~~~~~d~~e~~~ig~~i~~~Vn~~~-~~lele~E~vy~~llLl~KKrYa~l~~~~~dG~~~~~~e~KGle~vR 1119 (1517)
|||||||+++..+.++++++|+++++.||+.| .+++||+|++|++++|++|||||++. .+|+ +++||+|+||
T Consensus 540 DTDSi~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~e~~y~~~~l~~KKrYa~~~---~~g~----l~~KG~e~vR 612 (775)
T 1qht_A 540 DTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVID---EEGK----ITTRGLEIVR 612 (775)
T ss_dssp ETTEEEEECTTCCHHHHHHHHHHHHHHHC------CCCEEEEEEEEEEEEETTEEEEEC---TTCC----CEEESCSCCC
T ss_pred ECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEHEECCCCEEEEEC---CCCE----EEEEEEEEEE
T ss_conf 05532787589999999999999999987608988699984875001000557699982---6986----9888538880
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76247579999999999932699889999999999999999964888844467730358899889998993579999998
Q 000430 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199 (1517)
Q Consensus 1120 RD~~~l~k~~~~~vl~~iL~~~~~e~~v~~i~~~l~~~~~~l~~g~v~l~~lvI~k~LtK~p~~Y~~~k~~PHV~vA~rl 1199 (1517)
||||+|+|++++.+++.||.+++.+++++.+++ +.+++++|++|+++|+|+|+|+|++++|+. .+|||++|+||
T Consensus 613 rd~~~l~k~~~~~vl~~ll~~~d~~~~~~~v~~----~~~~l~~~~~~~~~lvi~k~lsk~~~~Y~~--~~phv~~A~rl 686 (775)
T 1qht_A 613 RDWSEIAKETQARVLEAILKHGDVEEAVRIVKE----VTEKLSKYEVPPEKLVIHEQITRDLRDYKA--TGPHVAVAKRL 686 (775)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----TC------------CCBCCBC--------C--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHCCCHHHCCC--CCHHHHHHHHH
T ss_conf 774899999999999999627999999999999----999998389998995344784389878288--88599999999
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHH
Q ss_conf 75099988999993689999316999898767433336915554069977889479985074388998410248999789
Q 000430 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279 (1517)
Q Consensus 1200 ~~~g~~~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~RA~~P~ev~~~~~~l~iD~eYYl~~QI~P~v~Rl~~~I~g~~~~~ 1279 (1517)
+++|.. +++||+|+|||+.++ .++++||++|+++..+ +++||++|||++||+||++|||+++ |.+...
T Consensus 687 ~~~g~~--~~~GdrI~YVi~~g~-------~~~~~ra~~~~~~~~~--~~~iD~~yYi~~qi~ppl~ri~~~~-g~~~~~ 754 (775)
T 1qht_A 687 AARGVK--IRPGTVISYIVLKGS-------GRIGDRAIPADEFDPT--KHRYDAEYYIENQVLPAVERILKAF-GYRKED 754 (775)
T ss_dssp HTTTCC--CCTTCBCCEEECCC------------CSEEETTCC-----------CHHHHTTHHHHSHHHHHTT-TC----
T ss_pred HHCCCC--CCCCCEEEEEEEECC-------CCHHHCCCCHHHHCCC--CCCCCHHHHHHHCCHHHHHHHHHHH-CCCHHH
T ss_conf 964999--999998999999689-------8735213688896337--8987879999963788999999883-999999
Q ss_pred H
Q ss_conf 9
Q 000430 1280 L 1280 (1517)
Q Consensus 1280 l 1280 (1517)
|
T Consensus 755 l 755 (775)
T 1qht_A 755 L 755 (775)
T ss_dssp -
T ss_pred H
T ss_conf 6
No 4
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=1.00 E-value=1 Score=1051.29 Aligned_cols=736 Identities=22% Similarity=0.352 Sum_probs=573.0
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 75999930023357889689998896239921579999823123599962899999046777667443204764789999
Q 000430 335 LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKK 414 (1517)
Q Consensus 335 l~fywlDa~E~~~~~~~g~i~LFGKv~~~~~~~Sccv~V~ni~R~ly~lPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1517)
..=|.||.+..... +..+|+|||++.+| . +||.|.|..+++| +|.+.. . .
T Consensus 6 ~~g~~l~~~~~~~~-~g~~i~~~g~t~~G---~-~~v~v~~~~~yfy-~~~~~~---~-----------------~---- 55 (786)
T 3k59_A 6 QAGFILTRHWRDTP-QGTEVSFWLATDNG---P-LQVTLAPQESVAF-IPADQV---P-----------------R---- 55 (786)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEETTE---E-EEEECSCCCEEEE-EEGGGH---H-----------------H----
T ss_pred CCCEEEEEEEEEEC-CCEEEEEEEECCCC---C-EEEEECCCCEEEE-EECCCH---H-----------------H----
T ss_conf 45479831799968-95599999985999---8-8999848836999-977867---8-----------------8----
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8999845579999776218733699999973112278998997213899983--38999997577788521135879227
Q 000430 415 LQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY--PFKDPPLPADLKGENFCSLLGTHSSA 492 (1517)
Q Consensus 415 ~~~~~~~v~~ei~~~~~~~~i~~~~~k~v~r~yaFe~~~vp~~~~~~lkv~y--~~~~p~lp~~l~G~tfs~vfgtn~s~ 492 (1517)
+..++.. ...+.++++..+ .|.. +. +++|.. |...+.+...++.. -..+||+|+.+
T Consensus 56 -----------~~~~~~~--~~~~~~~~~~l~-~~~~------~~-~~~i~~~~~~~~~~~r~~l~~~-g~~v~EadI~~ 113 (786)
T 3k59_A 56 -----------AQHILQG--EQGFRLTPLALK-DFHR------QP-VYGLYCRAHRQLMNYEKRLREG-GVTVYEADVRP 113 (786)
T ss_dssp -----------HHHHTTT--CCSEEEEEEEEE-CTTC------CE-EEEEEESSHHHHHHHHHHHHHT-TCCCBSTTCCH
T ss_pred -----------HHHHHHC--CCCEEEEEEEEE-EECC------CE-EEEEEECCHHHHHHHHHHHHHC-CCCEEECCCCH
T ss_conf -----------9999733--883699985534-1269------56-9999987999999999999975-98363246883
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCE
Q ss_conf 87885416987865689821533799998554318999707997200268888789999359999965257888786638
Q 000430 493 LELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEI 572 (1517)
Q Consensus 493 lErFli~rkI~Gp~Wl~i~~~~~~~~~~~~S~Ck~E~~v~~~~~i~~~~~~~~~~~~PpL~ilSldIet~~n~~~~~~EI 572 (1517)
..|||||++|.|++|++..... ...+.| .+.+ . . ..+|||+++||||||.. ..+|
T Consensus 114 ~~RfliD~~i~~~~w~~~~~~~-----~~~~~~----------~~~~--~-~--~~~p~lrilsfDIE~~~-----~g~i 168 (786)
T 3k59_A 114 PERYLMERFITSPVWVEGDMHN-----GTIVNA----------RLKP--H-P--DYRPPLKWVSIDIETTR-----HGEL 168 (786)
T ss_dssp HHHHHHHTTCSSEEEEEEEEET-----TEEEEE----------EEEE--C-S--SCCCCCCEEEEEEEECT-----TSCE
T ss_pred HHEEEEECCCCCCEEEEEECCC-----CCEECC----------EEEE--C-C--CCCCCCEEEEEEEEECC-----CCCE
T ss_conf 5515576586650699973347-----815211----------5745--7-8--88888708999999768-----9988
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 99988875065456854655556899642079974279965677630211012688997139604649999999999998
Q 000430 573 VSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652 (1517)
Q Consensus 573 ~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~~~~~~~g~~v~~~~~sEr~LL~~Fl~~I~ 652 (1517)
++|+.- ... . ...|++-. +.+. ....+..|..+ ++|++||.+|+++|+
T Consensus 169 ~~I~~~--~~~--~-------------~~v~~l~~-~~~~-------------~~~~~~~V~~f-~~E~~lL~~f~~~i~ 216 (786)
T 3k59_A 169 YCIGLE--GCG--Q-------------RIVYMLGP-ENGD-------------ASSLDFELEYV-ASRPQLLEKLNAWFA 216 (786)
T ss_dssp EEEEEE--ETT--E-------------EEEEEESS-CCSC-------------CTTCSSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEEC--CCC--C-------------CEEEEEEC-CCCC-------------CCCCCCEEEEE-CCHHHHHHHHHHHHH
T ss_conf 999823--899--8-------------86999966-8877-------------77888449996-999999999999998
Q ss_pred HCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECHHHHH
Q ss_conf 42998798235575469999999998499997521126555687753444765445899999413310139952279873
Q 000430 653 KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSR 732 (1517)
Q Consensus 653 ~~DPDIIvGhNi~gFDLpyLl~Ra~~lkI~~~~wsriGRlkr~~~pk~~~~~~~fg~~~~~~~~~~i~GRli~Dl~~~~k 732 (1517)
++|||||+|||+.+||||||++||..||++. ++||.++...++ . ..++. ......++||++||++.+.+
T Consensus 217 ~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~----~lGR~~~~~~~~--~--~~~~~---~~~~~~i~GRv~lDl~~~lk 285 (786)
T 3k59_A 217 NYDPDVIIGWNVVQFDLRMLQKHAERYRLPL----RLGRDNSELEWR--E--HGFKN---GVFFAQAKGRLIIDGIEALK 285 (786)
T ss_dssp HHCCSEEEESSTTTTHHHHHHHHHHHHTCCC----CCBTTTBCCEEE--E--CSSST---TCEEEECTTCEEEEHHHHHH
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHCCCC----EECCCCCCCCCC--C--CCCCC---CCEEEEECCEEEEEHHHHHH
T ss_conf 7099999961776676899999999849994----014478865323--5--66677---73168875879998199897
Q ss_pred H-CCCCCCCCHHHHHHHHCCCCCCCCCH----HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 1-01468989899999860798885595----549999963645999999999868988998854045124877752027
Q 000430 733 D-LLREVSYSLTQLAKTQLNKDRKEVGP----HDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807 (1517)
Q Consensus 733 e-~~k~~SYsL~~va~~~Lg~~k~di~~----~eI~~~~~~~~~l~~L~~Y~~~Da~l~~~L~~kl~ilpL~~qLt~IaG 807 (1517)
. .+++.||+|++||+++||.+|.+.++ .+|.++|.+++ .+++.||++||.++++|+.+++++|++.++++++|
T Consensus 286 ~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl~ll~~~~elarl~G 363 (786)
T 3k59_A 286 SAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKTEIMPFLLERATVNG 363 (786)
T ss_dssp HTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6037878888899999980898756574235999999996297--99999999999999999987508999999999969
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83244301632102478678998844820359520346755311025788666541112234677888987554546899
Q 000430 808 NLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKR 887 (1517)
Q Consensus 808 n~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~~~r~~~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~k 887 (1517)
++|+++ |++..++++||||++|++||++|++.. ..
T Consensus 364 i~~~~~--ggs~~~~~~lll~~~~~~~~i~P~~~~-------------------------------------------~~ 398 (786)
T 3k59_A 364 LPVDRH--GGSVAAFGHLYFPRMHRAGYVAPNLGE-------------------------------------------VP 398 (786)
T ss_dssp SCTTCC--CCHHHHHHHHHHHHHHHTTBCCCCTTS-------------------------------------------SC
T ss_pred CCHHHC--CCHHHHHHHHHHHHHHHCCEECCCCCC-------------------------------------------CC
T ss_conf 897880--557999999999998775900777665-------------------------------------------56
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC-----CCCCCCCCC---CCCCCCCCHHHHHHHH
Q ss_conf 98778843441456531232899622575324898727651343249-----999845688---8886677288999999
Q 000430 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERS-----PDGLVPHLP---SSKTTGVLPELLKNLV 959 (1517)
Q Consensus 888 k~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tTv~~~-----~~~~v~~~P---~~~~~GilP~iL~~Lv 959 (1517)
..+|+||+|++|++|+|++ |++|||+|||||||++|||||+|++.. ++..++... ...++|+||++|++|+
T Consensus 399 ~~~y~Gg~V~eP~~G~y~~-V~~lDF~SLYPSIi~~~ni~~~t~~~~~~~~~~~~~~~~~~g~~f~~~~g~lp~~l~~l~ 477 (786)
T 3k59_A 399 PHASPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIW 477 (786)
T ss_dssp CCCCCCCCBCCCCCEEESC-EEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSCCSHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCEEE-EEEEEHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 6668885796045774326-999980110478999857896433345677544552368998457526874399999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999999974201257876599999986311322356543456567877899999997999999999998416935999
Q 000430 960 QRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIY 1039 (1517)
Q Consensus 960 ~~R~~vK~~mK~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~VT~~GReiL~~t~~~ve~~~g~~VIY 1039 (1517)
+.|+++|+.|+ +.+|+|+|++|||+|||+|++++||||+++|++||++||++|+.|++++|+ +|++|||
T Consensus 478 ~~R~~~K~~~~----------~~~q~AlKi~~Ns~YG~~G~~~~~~~~~~~A~~iT~~GR~~l~~~~~~ie~-~g~~ViY 546 (786)
T 3k59_A 478 HGRDEAKRQGN----------KPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEA-QGYDVIY 546 (786)
T ss_dssp HHHHHHHHTTC----------HHHHHHHHHHHHHHHHGGGSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHHHCC----------HHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEE
T ss_conf 99999998441----------578874530002132402355777777789999999999999999999998-6988999
Q ss_pred EECCCEEEECCC-CCHHHHHHHHHHHHHHHHCCCC----------EEEEEEEEEEEEEEEE--------CCCEEEEEEEE
Q ss_conf 505400352386-6299999999999999861362----------1687211012024420--------24301599954
Q 000430 1040 GDTDSIMIHSGI-DDIAKAKAIAGKVIQEVNKKYK----------CLEIDLDGLYKRMLLL--------KKKKYAAVKVQ 1100 (1517)
Q Consensus 1040 GDTDSimI~~~~-~d~~e~~~ig~~i~~~Vn~~~~----------~lele~E~vy~~llLl--------~KKrYa~l~~~ 1100 (1517)
|||||+||+++. .+.++++++|++++++||+.|+ +++||+|++|++|||+ +||||||+.++
T Consensus 547 GDTDSvfv~~~~~~~~~~~~~~g~~l~~~vn~~~~~~~~~~~l~~~i~Le~Ekvy~~~ll~t~rg~~~~~KKRYag~~~~ 626 (786)
T 3k59_A 547 GDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQE 626 (786)
T ss_dssp CBSSEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEESEEEECBCTTSSSBCSSCEEEEEEE
T ss_pred EECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHEEHHCCCCCCCCCCEEEEEEEC
T ss_conf 95560499718989999999999999999989887542430588756999977575252032058766666428999852
Q ss_pred ECCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 12882110588953013307624757999999999993269988999999999999999996488884446773035889
Q 000430 1101 FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKP 1180 (1517)
Q Consensus 1101 ~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vl~~iL~~~~~e~~v~~i~~~l~~~~~~l~~g~v~l~~lvI~k~LtK~ 1180 (1517)
.+| +++++||+|+||||||+|+|++++++|+.||.+.+++ +++.+..++|++|+++ ++|+|+|+|+|+
T Consensus 627 -~~~---~~~~~KGle~vRrD~~~l~k~~~~~~l~~il~~~~v~-------~~~~~~~~~l~~g~~~-~~lv~~k~l~k~ 694 (786)
T 3k59_A 627 -GDK---QRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQ-------EYVRETIDKLMAGELD-ARLVYRKRLRRP 694 (786)
T ss_dssp -TTE---EEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHTTCCG-GGCCEEEEECSC
T ss_pred -CCC---CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCCCC-HHEEEEEEECCC
T ss_conf -899---7799985478768740999999999999997699999-------9999999999759997-362897322679
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC----CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 9889998993579999998750----999889999936899993169998987674333369155540699778894799
Q 000430 1181 PEAYPDAKNQPHVQVALRLKQS----GYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYY 1256 (1517)
Q Consensus 1181 p~~Y~~~k~~PHV~vA~rl~~~----g~~~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~RA~~P~ev~~~~~~l~iD~eYY 1256 (1517)
+++|+. +.+|||++|+++.++ |....++.||+|+|||+.+ |+ .|.++. +.+||++||
T Consensus 695 ~~~Y~~-~~~phv~aa~~~~~~~~~~g~~~~~~~G~rI~YVi~~~-g~-------------~p~~~~----~~~iD~~yY 755 (786)
T 3k59_A 695 LSEYQR-NVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTN-GP-------------EPLDYQ----RSPLDYEHY 755 (786)
T ss_dssp GGGCCS-CCCHHHHHHHHHHHHHHHTTCCCCSTTSEEEEEEEETT-EE-------------EEGGGC----CSCBCHHHH
T ss_pred HHHCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC-CC-------------CCHHHC----CCCCCHHHH
T ss_conf 677265-78579999999987523149876898899989999679-99-------------975552----699858999
Q ss_pred HHHCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 8507438899841024899978998
Q 000430 1257 ASQQIHPVVSRLCASIEGTSPERLA 1281 (1517)
Q Consensus 1257 l~~QI~P~v~Rl~~~I~g~~~~~la 1281 (1517)
|++||+|+++|++. +.|.|.+.|.
T Consensus 756 i~~ql~p~~~~il~-~~g~~~~~l~ 779 (786)
T 3k59_A 756 LTRQLQPVAEGILP-FIEDNFATLM 779 (786)
T ss_dssp HHHTHHHHHHTTGG-GGTCCHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCCCHHHHC
T ss_conf 99761999999987-6299999970
No 5
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=1.00 E-value=1 Score=995.85 Aligned_cols=764 Identities=20% Similarity=0.251 Sum_probs=564.4
Q ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 99917599993002335788968999889623992157999982312359996289999904677766744320476478
Q 000430 331 DDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMA 410 (1517)
Q Consensus 331 ~~~~l~fywlDa~E~~~~~~~g~i~LFGKv~~~~~~~Sccv~V~ni~R~ly~lPr~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1517)
.+..-.+|.||++.+..+ +..+|+|||.+..+ .|+|+.|+|+.+|||+ +.+. +++.
T Consensus 10 ~~~~~~~~ll~~~y~~~~-~~~vi~l~~~~~~~---~~~~~~v~gf~pYfyv-~~~~----~~~~--------------- 65 (847)
T 1s5j_A 10 AQENKIYFLLQVDYDGKK-GKAVCKLFDKETQK---IYALYDNTGHKPYFLV-DLEP----DKVG--------------- 65 (847)
T ss_dssp CCTTCEEEEEEEEEETTT-TEEEEEEEETTTTE---EEEEECCSCCCCEEEE-SSCH----HHHT---------------
T ss_pred CCCCCEEEEEEEEEECCC-CCEEEEEEEEECCC---CEEEEECCCCCEEEEE-ECCC----HHHH---------------
T ss_conf 445871799854520579-97699999861894---3899993898607999-7780----7889---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEE--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998999845579999776218733699999973112278998997213899983--3899999757778852113587
Q 000430 411 FRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINY--PFKDPPLPADLKGENFCSLLGT 488 (1517)
Q Consensus 411 ~~~~~~~~~~~v~~ei~~~~~~~~i~~~~~k~v~r~yaFe~~~vp~~~~~~lkv~y--~~~~p~lp~~l~G~tfs~vfgt 488 (1517)
.+ ...+.+..+ ..+..|+|.-.+.. ....++||.. |...+.+...+. .+|++
T Consensus 66 ----------~~----~~~~~~~~~--~~ve~v~k~~~~~~-----~~~~~~ki~~~~p~~v~~~r~~l~-----~~~Ea 119 (847)
T 1s5j_A 66 ----------KI----PKIVRDPSF--DHIETVSKIDPYTW-----NKFKLTKIVVRDPLAVRRLRNDVP-----KAYEA 119 (847)
T ss_dssp ----------TC----HHHHTCTTE--EEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHTTSSS-----CEESC
T ss_pred ----------HH----HHHHCCCCC--EEEEEEEEEECCCC-----CCEEEEEEEEECHHHHHHHHHHHH-----HHEEC
T ss_conf ----------99----998643784--08999986742578-----743699999957899999999856-----66003
Q ss_pred CCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCC------CCC-----CCCCCCCEEEEE
Q ss_conf 922787885416987865689821533799998554318999707997200268------888-----789999359999
Q 000430 489 HSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSS------SKH-----VAEVPPVTVTAI 557 (1517)
Q Consensus 489 n~s~lErFli~rkI~Gp~Wl~i~~~~~~~~~~~~S~Ck~E~~v~~~~~i~~~~~------~~~-----~~~~PpL~ilSl 557 (1517)
|+.+..||+||++|.|++|+++...........+| .|+.+.. +++..... ..+ ...+||++++||
T Consensus 120 dI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ilsf 195 (847)
T 1s5j_A 120 HIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLD---EKDVEEI-KKAFADSDEMTRQMAVDWLPIFETEIPKIKRVAI 195 (847)
T ss_dssp SSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCC---HHHHHHH-HHHTTTSCHHHHHHHHHHTHHHHSCCCCCCEEEE
T ss_pred CCCHHHHHHEECCCCCEEEEEEECCCCCCCCCCCC---HHHCCCH-HHHHCCCHHHHCCCCCCCCHHCCCCCCCCEEEEE
T ss_conf 77668651112486640799985465533565455---2110102-3333065033101101101000157998549999
Q ss_pred EEEE-C-----CCCCCC-CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 9652-5-----788878-66389998887506545685465555689964207997427996567763021101268899
Q 000430 558 NLKT-V-----FNKRQD-VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAG 630 (1517)
Q Consensus 558 dIet-~-----~n~~~~-~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~~~~~~~g 630 (1517)
|||| . ||++++ .+.|++||+.. ... . ...|++- +. ..+.+.. ...|
T Consensus 196 DIEt~s~~~g~fP~~~~~~d~Ii~Is~~~-~~g----~-----------~~~~~~~-~~---~~~~~~~-------~i~~ 248 (847)
T 1s5j_A 196 DIEVYTPVKGRIPDSQKAEFPIISIALAG-SDG----L-----------KKVLVLN-RN---DVNEGSV-------KLDG 248 (847)
T ss_dssp EEEECCSSSSCCCCTTTCCSCEEEEEEEE-TTS----C-----------EEEEEEC-SS---CCCCCCE-------EETT
T ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEC-CCC----C-----------CEEEEEE-CC---CCCCCCC-------CCCC
T ss_conf 77867688899999544677189999980-689----7-----------3899992-77---4555666-------7799
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 713960464999999999999842998798235575469999999998499997521-12-6555687753444765445
Q 000430 631 SNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWS-KI-GRLKRSEMPKLRKGRTIFG 708 (1517)
Q Consensus 631 ~~v~~~~~sEr~LL~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~lkI~~~~ws-ri-GRlkr~~~pk~~~~~~~fg 708 (1517)
..+..+ ++|++||.+|+++|++ +|+|+|||+.+||||||.+||..+|++...|. .+ || +
T Consensus 249 ~~v~~~-~~E~~LL~~f~~~i~~--~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr-------------~--- 309 (847)
T 1s5j_A 249 ISVERF-NTEYELLGRFFDILLE--YPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGK-------------D--- 309 (847)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHTT--CSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCST-------------T---
T ss_pred CEEEEE-CCHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCC-------------C---
T ss_conf 769980-9999999999998444--99799957877569999999987299733378000599-------------8---
Q ss_pred CCCCCCCEEEECCEEEEECHHHHHHC--------CCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 89999941331013995227987310--------1468989899999860798885595549999963645999999999
Q 000430 709 SGASPGIMSCIAGRLLCDTFLCSRDL--------LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE 780 (1517)
Q Consensus 709 ~~~~~~~~~~i~GRli~Dl~~~~ke~--------~k~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~~~l~~L~~Y~~ 780 (1517)
...+.||+++|+|...+.. .++.||+|++||+++||.+|.+++ .+|. + ..+.++++||+
T Consensus 310 -------~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sysL~~Va~~~Lg~~K~dv~-~~i~----~-~~~~~l~~Ycl 376 (847)
T 1s5j_A 310 -------EAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVD-TLIS----F-LDVEKLIEYNF 376 (847)
T ss_dssp -------CCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--S-SCTT----T-CCHHHHHHHHH
T ss_pred -------CEEECCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHH-HHHH----H-CCHHHHHHHHH
T ss_conf -------368645787031788755334430024554656689999998099986545-7552----2-14999999988
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 86898899885--4045124877752027832443016321024786789988448203595203467553110257886
Q 000430 781 TDAWLSMELMF--HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGV 858 (1517)
Q Consensus 781 ~Da~l~~~L~~--kl~ilpL~~qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~~~r~~~~~ 858 (1517)
+||.++++|+. +..++++..++++++|.++..++.++.+.+++++|+|+++++||++|++....... . +.
T Consensus 377 ~Da~lt~~L~~~~~~~~~~~~~~la~i~~lp~~~l~r~~~~~~v~slll~~~~~~~~i~P~~~~~~~~~-------~-~~ 448 (847)
T 1s5j_A 377 RDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEELTRTEISTWVKNLYYWEHRKRNWLIPLKEEILAKS-------S-NI 448 (847)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHCCCHHHHTTSCHHHHHHHHHHHHHHHHTBCCCCHHHHHHTT-------C-C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC-------C-CC
T ss_conf 879999999998767677999999988388905516642436668788999986695167814654320-------3-44
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCC--
Q ss_conf 665411122346778889875545468999877884344145653123289962257532489872765134324999--
Q 000430 859 EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD-- 936 (1517)
Q Consensus 859 e~~~~~~~~~~d~~~~~~~~~~~~~~~~kk~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tTv~~~~~-- 936 (1517)
......++.+|+||+|++|++|+|++ |++|||+|||||||++|||||+|+++...
T Consensus 449 ----------------------~~~~~~~~~~y~Gg~V~eP~~G~y~~-v~~lDf~SLYPSIi~~~Nl~~~T~~~~~~~~ 505 (847)
T 1s5j_A 449 ----------------------RTSALIKGKGYKGAVVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLSYETVDIQQCKK 505 (847)
T ss_dssp -----------------------------------CCCCCCCSEEEEE-EEEEEETTHHHHHHHHTTCCTTTBSCSCCSS
T ss_pred ----------------------CCHHCCCCCCCCCCCCCCCCCCCCCC-EEEEEHHHHCHHHHHHCCCCCCEECCCCCCC
T ss_conf ----------------------41000356545677111777786042-4676412136388987079831011455565
Q ss_pred -----CCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHC-C-H-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -----9845688---88866772889999999999999997420-1-2-5787659999998631132235654345656
Q 000430 937 -----GLVPHLP---SSKTTGVLPELLKNLVQRRRMVKTWMKTA-S-G-LKIQQLDIQQQALKLTANSMYGCLGFSNSRF 1005 (1517)
Q Consensus 937 -----~~v~~~P---~~~~~GilP~iL~~Lv~~R~~vK~~mK~~-~-~-~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srf 1005 (1517)
..+|..+ +..+.|++|.+++.|++.|+++|+.|++. . + .++.+||.+|+|+|++|||+|||+|++++||
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~g~~p~~l~~l~~~R~~~kk~~~k~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~~~~~ 585 (847)
T 1s5j_A 506 PYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAETFPL 585 (847)
T ss_dssp CCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 44442127987605750577666799999999999999998756579989999989999999998622321014545666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEE
Q ss_conf 78778999999979999999999984169359995054003523866299999999999999861362168721101202
Q 000430 1006 YAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKR 1085 (1517)
Q Consensus 1006 y~~~lA~~VT~~GReiL~~t~~~ve~~~g~~VIYGDTDSimI~~~~~d~~e~~~ig~~i~~~Vn~~~~~lele~E~vy~~ 1085 (1517)
||+++|++||++||++|++|++++++ +|++||||||||+||+.+.. +.+ .++++.|++.+ +++||+|++|++
T Consensus 586 ~~~~~A~~iT~~GR~~l~~t~~~ve~-~g~~ViYGDTDSi~v~~~~~--~~~----~~~~~~v~~~~-~i~le~e~vy~~ 657 (847)
T 1s5j_A 586 YAPRVAESVTALGRYVITSTVKKARE-EGLTVLYGDTDSLFLLNPPK--NSL----ENIIKWVKTTF-NLDLEVDKTYKF 657 (847)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT-TTCCEEEEETTEEEEESCCH--HHH----HHHHHHHHHHS-SCCEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCCCCCEEEECCCH--HHH----HHHHHHHHHHC-CCCEEECCHHHH
T ss_conf 68889999999999999999999985-89689617875348954867--899----99999987446-955786202175
Q ss_pred EEEE-CCCEEEEEEEEECCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHH
Q ss_conf 4420-24301599954128821105889530133076247579999999999932699---8899999999999999999
Q 000430 1086 MLLL-KKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERS---CEDVVESIHNSLMKVQEDM 1161 (1517)
Q Consensus 1086 llLl-~KKrYa~l~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vl~~iL~~~~---~e~~v~~i~~~l~~~~~~l 1161 (1517)
++|. +||||||+. .+|+ +++||+|+||||||+|+|++++.+++.||.+.+ .+.+++.+++++.+..++|
T Consensus 658 ~ll~~~KKrYag~~---~~g~----~~~KG~e~vRrd~~~l~k~~~~~~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~~l 730 (847)
T 1s5j_A 658 VAFSGLKKNYFGVY---QDGK----VDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKL 730 (847)
T ss_dssp EEEC----CEEEEC---SSSC----CCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTT
T ss_pred HCCCHHHCCEEEEE---CCCE----EEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72250008289883---6980----4026668850772799999999999999734885569999999999999999999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 64888844467730358899889998993579999998750999889999936899993169998987674333369155
Q 000430 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDE 1241 (1517)
Q Consensus 1162 ~~g~v~l~~lvI~k~LtK~p~~Y~~~k~~PHV~vA~rl~~~g~~~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~RA~~P~e 1241 (1517)
++|++|+++|+|+++|+|++++|.+ +.+|||++|++|++.|. .++.||+|+|||+.++. +.. |.+
T Consensus 731 ~~~~~~~~~l~~~k~l~k~~~~Y~~-~~~~hv~~A~~~~~~g~--~~~~GdrI~Yvi~~~~~-----g~~-------~~~ 795 (847)
T 1s5j_A 731 KNKGYNLDELAFKVMLSKPLDAYKK-NTPQHVKAALQLRPFGV--NVLPRDIIYYVKVRSKD-----GVK-------PVQ 795 (847)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HCCCCCHHHEEEEEEECCCHHHHCC-CCCHHHHHHHHHHHCCC--CCCCCCEEEEEEEECCC-----CCC-------HHH
T ss_conf 7599988998999885459667344-88789999999984699--99998988999996899-----988-------556
Q ss_pred HHHCCCCCCCCHHHHHHHCCHHHHHHHHCCC
Q ss_conf 5406997788947998507438899841024
Q 000430 1242 LKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272 (1517)
Q Consensus 1242 v~~~~~~l~iD~eYYl~~QI~P~v~Rl~~~I 1272 (1517)
..+. .+||++|||++ |.|++++|++++
T Consensus 796 ~~~~---~~iD~~~Yl~~-l~~~~~~il~~~ 822 (847)
T 1s5j_A 796 LAKV---TEIDAEKYLEA-LRSTFEQILRAF 822 (847)
T ss_dssp ---------CCSSTTHHH-HHTTSTTHHHHH
T ss_pred HCCC---CCCCHHHHHHH-HHHHHHHHHHHH
T ss_conf 2344---68899999985-466999999886
No 6
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=1.00 E-value=1 Score=914.14 Aligned_cols=638 Identities=16% Similarity=0.208 Sum_probs=489.8
Q ss_pred CCCCEEEEEEEEEC----CCCCC-CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 99935999996525----78887-86638999888750654568546555568996420799742799656776302110
Q 000430 549 VPPVTVTAINLKTV----FNKRQ-DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623 (1517)
Q Consensus 549 ~PpL~ilSldIet~----~n~~~-~~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~~~ 623 (1517)
.+.+++++||||+. ||+++ -..+|++||+. .+.. ++ ...|-+...+.+..-+.+....+.
T Consensus 105 ~~~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~-~~------------~~~~~l~~~~~~~~~~~~~~~~~~ 169 (903)
T 3qex_A 105 HTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSID-DR------------FYVFDLLNSPYGNVEEWSIEIAAK 169 (903)
T ss_dssp GGGSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTT-TE------------EEEEEECEETTEECCCCCHHHHHS
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEE--ECCC-CE------------EEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 66462899967867899998843477777999999--6799-97------------999986225445655544210012
Q ss_pred C--C--C-----CCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-CCCCC-CCCCCCCCC
Q ss_conf 1--2--6-----8899713960464999999999999842998798235575469999999998-49999-752112655
Q 000430 624 D--R--N-----SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV-CRVPS-SMWSKIGRL 692 (1517)
Q Consensus 624 ~--~--~-----~~~g~~v~~~~~sEr~LL~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~-lkI~~-~~wsriGRl 692 (1517)
. + . ...+..++.+ .+|++||.+|+++|+++|||||+|||+.+||||||++||.. +|++. ..|+.+||.
T Consensus 170 ~~~~~~~~~~~~~~~~v~v~~f-~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~ 248 (903)
T 3qex_A 170 LQEQGGDEVPSEIIDKIIYMPF-DNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKT 248 (903)
T ss_dssp CGGGTCCCCCHHHHTTEEEEEE-SSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCE
T ss_pred CCCCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 2456666665446797189974-999999999999999839998996277557799999999997398500000102654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECHHHHHH--CCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCH
Q ss_conf 56877534447654458999994133101399522798731--0146898989999986079888559554999996364
Q 000430 693 KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD--LLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLE 770 (1517)
Q Consensus 693 kr~~~pk~~~~~~~fg~~~~~~~~~~i~GRli~Dl~~~~ke--~~k~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~~ 770 (1517)
+....+ ..||.+. ...++||+++|++.++++ ..++.||+|++||+++||.+|.+++ .+|.++|..
T Consensus 249 ~~~~~~------~~~G~~~----~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~-~~I~~~~~~-- 315 (903)
T 3qex_A 249 RVKVIE------NMYGSRE----IITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD-GPISKLRES-- 315 (903)
T ss_dssp EEEEEE------ETTEEEE----EEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCS-SCGGGHHHH--
T ss_pred CCCCHH------HHCCCCE----EEEEECEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCH-HHHHHHHHC--
T ss_conf 443203------3228731----698717687539999987371676778999999997399966527-799999953--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHH
Q ss_conf 59999999998689889988540451248777520278324430163210247867899884482035952034675531
Q 000430 771 SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850 (1517)
Q Consensus 771 ~l~~L~~Y~~~Da~l~~~L~~kl~ilpL~~qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~ 850 (1517)
.+.++++||++||.++++|+.++++++++.++++++|++|.+++. +...+|+||+|+++++||++|++..
T Consensus 316 d~~~L~~Ycl~Da~Lt~~L~~Kl~li~~~~elArl~Gi~~~~vls--q~~v~e~LLlr~a~~~~~iiP~~~~-------- 385 (903)
T 3qex_A 316 NHQRYISYNIIAVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFS--PIKTWDAIIFNSLKEQNKVIPQGRS-------- 385 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGC--HHHHHHHHHHHHHHTTTEECCCCCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--HHHHHHHHHHHHHHHCCEECCCCCC--------
T ss_conf 989999999988899999999975179999999984988799334--1788999999999878982667755--------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 10257886665411122346778889875545468999877884344145653123289962257532489872765134
Q 000430 851 KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930 (1517)
Q Consensus 851 ~~r~~~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~kk~~Y~GGlVleP~~Gly~~~V~~LDFnSLYPSII~~~NIc~tT 930 (1517)
..+.+|+||+|++|++|+|++ |++|||+|||||||++|||||+|
T Consensus 386 -----------------------------------~~~~~y~Gg~V~~p~~G~y~~-v~~lDf~SLYPsIi~~~ni~~~T 429 (903)
T 3qex_A 386 -----------------------------------HPVQPYPGAFVKEPIPNRYKY-VMSFDLTSLYPSIIRQVNISPET 429 (903)
T ss_dssp -----------------------------------CCCCCCCCCCBCCCCCEECSS-EEEEEETTHHHHHHHHHTCCGGG
T ss_pred -----------------------------------CCCCCCCCCEEECCCCCCEEE-EEEEEHHHHCHHHHHHHCCCHHH
T ss_conf -----------------------------------556788887785566786689-99976234354899985859433
Q ss_pred CCCCCCC----------------CCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH---------------
Q ss_conf 3249999----------------845688-----8886677288999999999999999742012---------------
Q 000430 931 VERSPDG----------------LVPHLP-----SSKTTGVLPELLKNLVQRRRMVKTWMKTASG--------------- 974 (1517)
Q Consensus 931 v~~~~~~----------------~v~~~P-----~~~~~GilP~iL~~Lv~~R~~vK~~mK~~~~--------------- 974 (1517)
+++.... .+...| ++.++||||++|++|++.|+++|+.||.++.
T Consensus 430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~p~g~~F~k~~~GiLP~iL~~Ll~~R~~~K~~mk~~~~~~~~~k~~L~~~~~~ 509 (903)
T 3qex_A 430 IAGTFKVAPLHDYINAVAERPSDVYSCSPNGMMYYKDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNLS 509 (903)
T ss_dssp EEEECCCCCHHHHHTTCSCCSCSSSEECTTSEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC
T ss_conf 04654432100001124579877546679985673578825599999999999999999764535530122100233445
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -------------------------------------5787659999998631132235654345656787789999999
Q 000430 975 -------------------------------------LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQ 1017 (1517)
Q Consensus 975 -------------------------------------~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~VT~~ 1017 (1517)
.++.+||++|+|+|++|||+|||||++++||||.++|++||++
T Consensus 510 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~d~rQ~AlKi~~NS~YG~~G~~~~r~~~~~~A~sIT~~ 589 (903)
T 3qex_A 510 VDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQINRKALINGLAGALGNVWFRYYDLRNATAITTF 589 (903)
T ss_dssp CCCCCCCCTTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 56731000012332345444310115666555433467888878999878888887777656856666899999999997
Q ss_pred HHHHHHHHHHHHHHC-------CC-CEEEEEECCCEEEECCCCC-HH--HHHHHHHHHHHH------------HHC----
Q ss_conf 799999999999841-------69-3599950540035238662-99--999999999999------------861----
Q 000430 1018 GREILRSTVDLVQNN-------LN-LEVIYGDTDSIMIHSGIDD-IA--KAKAIAGKVIQE------------VNK---- 1070 (1517)
Q Consensus 1018 GReiL~~t~~~ve~~-------~g-~~VIYGDTDSimI~~~~~d-~~--e~~~ig~~i~~~------------Vn~---- 1070 (1517)
||++|+.|++.+++. .| .+|||||||||||+++... .+ +++++|+++... +++
T Consensus 590 GR~~i~~~~~~v~~~~~~~~~~~~~~~VIYGDTDSvfV~~~~~~~~~~~~~f~~g~~l~~~i~~~~~~~~~~~i~~~~~e 669 (903)
T 3qex_A 590 GQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFRE 669 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCEEEEETTEEEEECHHHHHHHCGGGCSSHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15999999999999987531777971899996880699847964312445556789999998899999888865567889
Q ss_pred ------CC-CEEEEEEEEEEEE--------EEEECCCEEEEEEEEECCCCC--CEEEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf ------36-2168721101202--------442024301599954128821--105889530133076247579999999
Q 000430 1071 ------KY-KCLEIDLDGLYKR--------MLLLKKKKYAAVKVQFKDGMP--YEVIERKGLDMVRRDWSLLSKEVGDFC 1133 (1517)
Q Consensus 1071 ------~~-~~lele~E~vy~~--------llLl~KKrYa~l~~~~~dG~~--~~~~e~KGle~vRRD~~~l~k~~~~~v 1133 (1517)
.| .++.|++|++|.+ ++|++||||||+.++ .+|+. .+++++||+|+||||||+++|++++++
T Consensus 670 l~e~~~~~~~p~~l~~E~i~~~~~gs~~~~~~l~~KKRYag~~~~-~~g~~~~~~kl~~kGlE~vRrd~~~~~k~~~~~~ 748 (903)
T 3qex_A 670 MCEYMNNKQHLMFMDREAIAGPPLGSKGIGGFWTGKKRYALNVWD-MEGTRYAEPKLKIMGLETQKSSTPKAVQKALKEC 748 (903)
T ss_dssp HHHHTTCSSCCCCEEEEEEECCCTTSCCCCEEEEETTEEEEEEEE-ETTEEEEEEEEEEESSGGGCTTSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHEEECCCEEEEEEE-CCCCCCCCCEEEEECEEEEECCCHHHHHHHHHHH
T ss_conf 998750377643402105644766654311100021546789860-5885467872678660788546369999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-----CCCHHHHHHHHHHH---CCCC
Q ss_conf 999932699889999999999999999964888844467730358899889998-----99357999999875---0999
Q 000430 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDA-----KNQPHVQVALRLKQ---SGYS 1205 (1517)
Q Consensus 1134 l~~iL~~~~~e~~v~~i~~~l~~~~~~l~~g~v~l~~lvI~k~LtK~p~~Y~~~-----k~~PHV~vA~rl~~---~g~~ 1205 (1517)
++.||.+.+ +. +++++.+..+++++ +++++|+|++++ +++++|.+. +.++||..|+..+. ++..
T Consensus 749 l~~ll~~~~-~~----~~~yv~~~~~~~~~--~~~~di~~~~~~-~~l~~Y~~~~~~~~~~p~hv~ga~~~n~~~~~~~~ 820 (903)
T 3qex_A 749 IRRMLQEGE-ES----LQEYFKEFEKEFRQ--LNYISIASVSSA-NNIAKYDVGGFPGPKCPFHIRGILTYNRAIKGNID 820 (903)
T ss_dssp HHHHHHTCH-HH----HHHHHHHHHHHGGG--SCGGGGCEEEEC-CCTGGGEETTEECTTCCHHHHHHHHHHHHTTTCSS
T ss_pred HHHHHHCCC-HH----HHHHHHHHHHHHHC--CCHHHEEEECCC-CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999986574-77----99999999999976--998887741014-99788177888899986027999999997521467
Q ss_pred -CCCCCCCEEEEEEEECCCCCCCCCCCCCCC-------CCCCHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCH
Q ss_conf -889999936899993169998987674333-------369155540699778894799850743889984102489997
Q 000430 1206 -TGCSAGDTVPYIICCEQGTSSGSSVGIAQR-------ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277 (1517)
Q Consensus 1206 -~~~~~Gd~I~YVI~~~~~~~~~~~~~~~~R-------A~~P~ev~~~~~~l~iD~eYYl~~QI~P~v~Rl~~~I~g~~~ 1277 (1517)
..++.|++|+||+.+++. ++.+| ...|.|+..+. ...+|++||+++||.||++|||+
T Consensus 821 ~~~~~~Gekv~~v~lk~~~-------~~~~~~i~~~~~~~~p~e~~~~~-~~~iD~~~~~~k~~~~pl~ri~~------- 885 (903)
T 3qex_A 821 APQVVEGEKVYVLPLREGN-------PFGDKCIAWPSGTEITDLIKDDV-LHWMDYTVLLEKTFIKPLEGFTS------- 885 (903)
T ss_dssp SCCCCTTSEEEEEEBCTTC-------TTSSSEEEEETTSCCCHHHHHHH-HHHBCHHHHHHHHTHHHHHHHHH-------
T ss_pred CCCCCCCCCCEEEEEECCC-------CCCCCEEECCCCCCCCHHHHHCC-CCCCCHHHHHHHHCHHHHHHHHH-------
T ss_conf 7777889834299971798-------88885675234566957775073-02337899998704539999998-------
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 8998881999755
Q 000430 1278 ERLADCLGLDPSK 1290 (1517)
Q Consensus 1278 ~~la~~lGld~~~ 1290 (1517)
.+|+|..+
T Consensus 886 -----~~g~~~e~ 893 (903)
T 3qex_A 886 -----AAKLDYEK 893 (903)
T ss_dssp -----HHTCCSSC
T ss_pred -----HCCCCHHH
T ss_conf -----72998898
No 7
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=399.54 Aligned_cols=187 Identities=28% Similarity=0.523 Sum_probs=164.3
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 87433367800001688771663999998222578422334445789999844323334456899998654677899999
Q 000430 1304 SSSLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMI 1383 (1517)
Q Consensus 1304 ~~~~~~~~~d~er~~~~~~l~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~i 1383 (1517)
+++|++|++|+|||++|+||+|+||+|+++++|+|++..... ...++|+.|++|+. .+++++|
T Consensus 2 ~~~lesqi~DeeRfr~c~~l~l~Cp~C~~~~~F~gv~~~~~~------------~~~~sg~~C~~C~~-----~~~~~~i 64 (206)
T 3flo_B 2 LQPLETTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYY------------RVSYNGLQCKHCEQ-----LFTPLQL 64 (206)
T ss_dssp ---------CTTTTTTCCCEEEECTTTCCEEEECSSSCCSSE------------EEETTEEEETTTCC-----BCCHHHH
T ss_pred CCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCC-----CCCHHHH
T ss_conf 878335699889747684148789999976378884457776------------42425550799887-----5789999
Q ss_pred HHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCH
Q ss_conf 99999999999985603132317965787554321466305767878899888620358441658899999999973133
Q 000430 1384 ANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463 (1517)
Q Consensus 1384 ~nql~~~ir~~i~~yy~~~~~C~d~~c~~~TR~~~~~~~~~~~~~~~C~~~~~C~g~~~~~ys~~~ly~qL~y~~~lfd~ 1463 (1517)
+|||+++||++|++||+|||+||||+|+++||++|+ .|.+|++ |+|+|+|++||||++|||||+||++|||+
T Consensus 65 ~nQl~l~iR~~i~~YY~gwlvCdD~~C~~rTR~lsv-------~g~rC~~-p~C~G~m~~eYtek~LYnQL~yf~~LFDv 136 (206)
T 3flo_B 65 TSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV-------FGKRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDC 136 (206)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEESCTTTCCEESCCCS-------STTBCSS-TTCCCBEEESSCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEC-------CCCCCCC-CCCCEEEEEEECHHHHHHHHHHHHHHHCH
T ss_conf 999999999999998067821178677865032002-------4887899-99880576660689999999999997078
Q ss_pred HHHHHHHHCCCC-----------CHH--HHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEE
Q ss_conf 576744100258-----------414--8998-645999999999999999842987552578601
Q 000430 1464 QRGIEKMEISAK-----------IPL--EKEL-NKIRPVVALAASTVQRIRERCAYGWVKLNDIAI 1515 (1517)
Q Consensus 1464 ~~~~~~~~~~~~-----------~~~--~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~v~l~~lf~ 1515 (1517)
++|++++.+... ... ..++ ..+++.|+.++++|++||++|||+||+|++||.
T Consensus 137 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nr~~~~~lk~vVdkyL~~~gy~~V~L~~lF~ 202 (206)
T 3flo_B 137 EKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDCGRRYVDMTSIFD 202 (206)
T ss_dssp HHHHTTCSCCSSCTTSTTCCSSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 999987202101110000221101112444240999999999999999999874986875888754
No 8
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=1.00 E-value=1 Score=354.28 Aligned_cols=263 Identities=15% Similarity=0.215 Sum_probs=203.5
Q ss_pred CCCCEEEEEEEEEC---CCCCCC-CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH---
Q ss_conf 99935999996525---788878-66389998887506545685465555689964207997427996567763021---
Q 000430 549 VPPVTVTAINLKTV---FNKRQD-VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE--- 621 (1517)
Q Consensus 549 ~PpL~ilSldIet~---~n~~~~-~~EI~~iS~~~~~~~~id~~~~~~~~~~~~~~~~ft~~r~~~~~~~p~~f~~~--- 621 (1517)
+||+++|||||||. ||.+++ .++|++||+..+.... ..+|+++.++.|...|......
T Consensus 103 ~p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~ 167 (388)
T 1noy_A 103 RKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDR---------------FYVFDLLNSMYGSVSKWDAKLAAKL 167 (388)
T ss_dssp GGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTE---------------EEEEEECCCSSCCCCCCCHHHHHSC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCE---------------EEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 8874799998886889999977899849999999964870---------------7999875046788775201222222
Q ss_pred ----HHCCCCC--CCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-CCCCC-CCCCCCCCCC
Q ss_conf ----1012688--99713960464999999999999842998798235575469999999998-49999-7521126555
Q 000430 622 ----ATDRNSK--AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQV-CRVPS-SMWSKIGRLK 693 (1517)
Q Consensus 622 ----~~~~~~~--~g~~v~~~~~sEr~LL~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~-lkI~~-~~wsriGRlk 693 (1517)
...+... .+..+..+ .+|++||.+|+++|++.|||||+|||+.+||||||++||.. +|++. +.|+++||++
T Consensus 168 ~~f~~~~~~~~~~~~v~v~~~-~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~ 246 (388)
T 1noy_A 168 DCEGGDEVPQEILDRVIYMPF-DNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVK 246 (388)
T ss_dssp GGGTCCCCCHHHHTTEEEEEE-SCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEE
T ss_pred CCCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 212346666556897589975-9999999999999987199699953777761999999999874973100147555004
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECHHHHHH-CCC-CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHH
Q ss_conf 6877534447654458999994133101399522798731-014-68989899999860798885595549999963645
Q 000430 694 RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD-LLR-EVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES 771 (1517)
Q Consensus 694 r~~~pk~~~~~~~fg~~~~~~~~~~i~GRli~Dl~~~~ke-~~k-~~SYsL~~va~~~Lg~~k~di~~~eI~~~~~~~~~ 771 (1517)
+..++ +.||.+. ...++||++||++.++++ .++ +.||+|++||+++||.+|.+++ ++|.++|. ..
T Consensus 247 ~~~~~------~~~g~~~----~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~-~~i~~~~~--~~ 313 (388)
T 1noy_A 247 SKLLQ------NMYGSKE----IYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYD-GPINKLRE--TN 313 (388)
T ss_dssp EEECC------GGGCSCE----EEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCS-SCGGGHHH--HH
T ss_pred CCCCH------HHHCCCC----EEEECCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCH-HHHHHHHH--HC
T ss_conf 55674------5628754----189737698577999865374756679999999999699977827-99999998--68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCC
Q ss_conf 99999999986898899885404512487775202783244301632102478678998844820359520
Q 000430 772 LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842 (1517)
Q Consensus 772 l~~L~~Y~~~Da~l~~~L~~kl~ilpL~~qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~ 842 (1517)
+.++++||++||.++++|+.+++++|++.++++|+|++|++++ |++ ...|+||||+||++|||+|++..
T Consensus 314 ~~~l~~Y~~~D~~l~~~L~~kl~~l~~~~ela~i~g~~~~~vl-~q~-~~~~~lll~~~~~~~~i~P~~~~ 382 (388)
T 1noy_A 314 HQRYISYNIIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVM-SPI-KTWDAIIFNSLKGEHKVIPQQGS 382 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGG-CHH-HHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHC-CCH-HHHHHHHHHHHHHCCEECCCCCC
T ss_conf 9999999999999999999987768889999675598979957-169-99999999999768998436876
No 9
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=1.00 E-value=1 Score=280.48 Aligned_cols=367 Identities=19% Similarity=0.253 Sum_probs=226.4
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCC-------CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999842998798235575469999999998499-------997521-1265556877534447654458999994
Q 000430 644 LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV-------PSSMWS-KIGRLKRSEMPKLRKGRTIFGSGASPGI 715 (1517)
Q Consensus 644 L~~Fl~~I~~~DPDIIvGhNi~gFDLpyLl~Ra~~lkI-------~~~~ws-riGRlkr~~~pk~~~~~~~fg~~~~~~~ 715 (1517)
|..|+.++...||||+ +||+ +||+.+|+.|+..++. |.. +. -++|.++....+. .++
T Consensus 44 l~~fi~~~~~~~~~i~-~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~-~~~~i~r~~~~~~~~i-----~~~------- 108 (575)
T 2py5_A 44 LDEFMAWVLKVQADLY-FHNL-KFAGAFIINWLERNGFKWSADGLPNT-YNTIISRMGQWYMIDI-----CLG------- 108 (575)
T ss_dssp HHHHHHHHHHHCCEEE-ETTH-HHHHHHHHHHHHHTTCEECTTCCTTE-EEEEEBTTCCEEEEEE-----EEE-------
T ss_pred HHHHHHHHHHCCCEEE-EECH-HHHHHHHHHHHHHHCCCCCCCCCCCC-CCCEECCCCEEEEEEE-----EEE-------
T ss_conf 9999999987199799-9874-43499999999973765432236411-0103426984899999-----980-------
Q ss_pred EEEECC--EEEEECHHHHHHCCCCCCCCHHHHHHHHCCC-CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 133101--3995227987310146898989999986079-8885595549999963645999999999868988998854
Q 000430 716 MSCIAG--RLLCDTFLCSRDLLREVSYSLTQLAKTQLNK-DRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFH 792 (1517)
Q Consensus 716 ~~~i~G--Rli~Dl~~~~ke~~k~~SYsL~~va~~~Lg~-~k~di~~~eI~~~~~~~~~l~~L~~Y~~~Da~l~~~L~~k 792 (1517)
..| ++++|.+.+.+. .++||..+++.++.. +|.++++..+... +-.....++.||++|+.++++++.+
T Consensus 109 ---~~~k~~~~i~~~Ds~~~----~~~SL~~~a~~f~~~~~K~~~py~~~~~~--~~~~~~~~~~Y~~~Dv~ll~~i~~~ 179 (575)
T 2py5_A 109 ---YKGKRKIHTVIYDSLKK----LPFPVKKIAKDFKLTVLKGDIDYHKERPV--GYKITPEEYAYIKNDIQIIAEALLI 179 (575)
T ss_dssp ---EETTEEEEEEEEEHHHH----SCSCHHHHHHHTTCCCCSSCCCTTSCCCT--TCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCEEEEEEEEHHHH----HHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---28874699999984865----25509999998289654776573004765--5111599999999999999999999
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 04512487775202783244301632102478678998844820359520346755311025788666541112234677
Q 000430 793 LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872 (1517)
Q Consensus 793 l~ilpL~~qLt~IaGn~~~rtL~g~raeriE~LLLhef~~~~yIiPdk~~~~~~~~~~~~r~~~~~e~~~~~~~~~~d~~ 872 (1517)
. +....+...++|+.|..... + +.- +..+..+|...... .++
T Consensus 180 ~--f~~~~~~~Tissla~~~f~~------~--~~~---~~~~~~~p~~~~~~-------------------~~~------ 221 (575)
T 2py5_A 180 Q--FKQGLDRMTAGSDSLKGFKD------I--ITT---KKFKKVFPTLSLGL-------------------DKE------ 221 (575)
T ss_dssp H--HHTTCCSSSHHHHHHHHHHH------H--HCH---HHHHHHSCCCCHHH-------------------HHH------
T ss_pred H--HHHHHHHCCCCCHHHHHHHH------H--HHH---CCCHHHCCCCCCHH-------------------HHH------
T ss_conf 9--87644432013089999986------7--410---00102146678217-------------------788------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEE-CC--CCCCCCEEEEEECCCCCHHHHHH--HCCCCCCCCCC-------------
Q ss_conf 88898755454689998778843441-45--65312328996225753248987--27651343249-------------
Q 000430 873 FDNDTSHNDHRKGKRGPAYAGGLVLE-PK--KGLYDKYILLLDFNSLYPSIIQE--YNICFTTVERS------------- 934 (1517)
Q Consensus 873 ~~~~~~~~~~~~~~kk~~Y~GGlVle-P~--~Gly~~~V~~LDFnSLYPSII~~--~NIc~tTv~~~------------- 934 (1517)
-..+|.||.|.. |. .|++++ |+++||+|||||+|.. +++...+....
T Consensus 222 --------------ir~~y~GGr~~~~p~y~~~~~~~-i~~~D~~SLYPs~m~~~~~P~g~p~~~~~~~~~~~~~~~~~g 286 (575)
T 2py5_A 222 --------------VRYAYRGGFTWLNDRFKEKEIGE-GMVFDVNSLYPAQMYSRLLPYGEPIVFEGKYVWDEDYPLHIQ 286 (575)
T ss_dssp --------------HHTTCCCCCEEECGGGBTCEECS-EEEEEETTHHHHHHHHSCEEEEEEEEEESSCCCCTTSCEEEE
T ss_pred --------------HHHCCCCCCCCCCCCCCCCCCCC-EEEEECCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEE
T ss_conf --------------99717885300011435667773-499866786488971799899984332441013457865228
Q ss_pred --------CCCCCCCCCC------------------------C-------------------------CCCCCCHHHHHH
Q ss_conf --------9998456888------------------------8-------------------------866772889999
Q 000430 935 --------PDGLVPHLPS------------------------S-------------------------KTTGVLPELLKN 957 (1517)
Q Consensus 935 --------~~~~v~~~P~------------------------~-------------------------~~~GilP~iL~~ 957 (1517)
+...+|.+|. . ...|+++..+..
T Consensus 287 ~v~~~v~~p~~~~P~lpp~~~~~~~~~~li~~~~~~~~g~~~t~vd~eL~~a~~g~ki~~i~~~~~f~~~~~~f~~~i~~ 366 (575)
T 2py5_A 287 HIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEYISGLKFKATTGLFKDFIDK 366 (575)
T ss_dssp EEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEEEEEEEEEEESCTTHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHH
T ss_conf 99999967700287456534666678853267776542089956628888605785788877889990688844999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------CCCC----------CHHHHHH
Q ss_conf 999999999997420125787659999998631132235654345--------------6567----------8778999
Q 000430 958 LVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSN--------------SRFY----------AKPLAEL 1013 (1517)
Q Consensus 958 Lv~~R~~vK~~mK~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~--------------srfy----------~~~lA~~ 1013 (1517)
|.+.|.+.+. ..+++.|+++||+||.+|... .+|+ +.++|++
T Consensus 367 l~~~k~~~~~--------------~~~~~~Kl~lNS~YGk~g~~~~~~~~~~~~~~~~~~~f~~~e~~~~~p~~v~ia~~ 432 (575)
T 2py5_A 367 WTYIKTTSEG--------------AIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYTPMGVF 432 (575)
T ss_dssp HHHHHHHCCH--------------HHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCHHHHHH
T ss_pred HHHHHHHCCH--------------HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9997652758--------------89999999877676662347555532898645310232037622268620468999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEC-CCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEEEEEEEEEEECC
Q ss_conf 999979999999999984169359995054003523-8662999999999999998-61362168721101202442024
Q 000430 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHS-GIDDIAKAKAIAGKVIQEV-NKKYKCLEIDLDGLYKRMLLLKK 1091 (1517)
Q Consensus 1014 VT~~GReiL~~t~~~ve~~~g~~VIYGDTDSimI~~-~~~d~~e~~~ig~~i~~~V-n~~~~~lele~E~vy~~llLl~K 1091 (1517)
||+.||.+|..+.+.+ |.+|+||||||+|+.. +..+. +.+.+ .+.+. .++.|..+..++++++
T Consensus 433 iTa~aR~~m~~~~~~~----~~~v~Y~DTDSi~~~~~~~~~~---------l~~~~~~~~lG--~~~~E~~~~~~~f~~~ 497 (575)
T 2py5_A 433 ITAWARYTTITAAQAC----YDRIIYCDTDSIHLTGTEIPDV---------IKDIVDPKKLG--YWAHESTFKRAKYLRQ 497 (575)
T ss_dssp HHHHHHHHHHHHHHHT----TTTEEEEETTEEEEESSSCCGG---------GGGGBCSSSTT--SEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHC----CCCEEEECCCCCEECCCCCHHH---------HHHCCCCCCHH--CHHHHHHEEEEEEEEC
T ss_conf 9999999999999974----7938996087604346555366---------64312633100--1003420426788217
Q ss_pred CEEEEEEEEE-CCCCC-----------CEEEEEEEEE
Q ss_conf 3015999541-28821-----------1058895301
Q 000430 1092 KKYAAVKVQF-KDGMP-----------YEVIERKGLD 1116 (1517)
Q Consensus 1092 KrYa~l~~~~-~dG~~-----------~~~~e~KGle 1116 (1517)
|+||+..+.. .+|+. ..+++.||+.
T Consensus 498 K~Y~~~~~~~~~~g~i~~~~~~~~~~~~~~~k~KGi~ 534 (575)
T 2py5_A 498 KTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMT 534 (575)
T ss_dssp TEEEEEEEEEEETTEEEECBTTBCSEEEEEEEETTCC
T ss_pred CEEEEEECCCCCCCCEEECCCCCCCCCCEEEECCCCC
T ss_conf 1476764033778967103544456752689937887
No 10
>1n5g_A 38-MER of DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; NMR {Synthetic} SCOP: g.67.1.1
Probab=1.00 E-value=1 Score=66.85 Aligned_cols=37 Identities=30% Similarity=0.788 Sum_probs=32.9
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf 3231796578755432146630576787889988862-035844
Q 000430 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRK 1444 (1517)
Q Consensus 1402 ~~~C~d~~c~~~TR~~~~~~~~~~~~~~~C~~~~~C~-g~~~~~ 1444 (1517)
||+||||+|.++||++++++ +++|+.|| +|+ |+|++|
T Consensus 1 wl~Cddp~C~~rtR~~~l~~---~~~gp~C~---~C~~g~l~~e 38 (38)
T 1n5g_A 1 WLICEEPTCRNRTRHLPLQF---SRTGPLCP---ACMKATLQPE 38 (38)
T ss_dssp CHHHHTHHHHHHHHHTTTCS---SSSCTTST---TCHHHHHTTC
T ss_pred CCCCCCCCCCCCEEEEEEEE---ECCCCCCC---CCCCEEEEEC
T ss_conf 92247887874417867884---25786688---8581676759
Done!