BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000431
(1515 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max]
Length = 1903
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/1070 (44%), Positives = 611/1070 (57%), Gaps = 137/1070 (12%)
Query: 509 QLPLQCNKADGPSNVHNAVVPYQVGPSSEHG--ALVPHQIKEKRKKLKPEVVLDPGTLRM 566
QL L D + NA+VPY+ S HG +VP IK ++ L+P+V LD T R+
Sbjct: 850 QLNLNAEARDLAFHEENALVPYKQKNSLIHGDGVIVPFHIK--KQHLRPKVNLDDETDRV 907
Query: 567 WNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
W L++ +D + ++ED KWW++ER VF GR SF ARMHL+ GDRRF WKGSVV
Sbjct: 908 WKLLL-LDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVV 966
Query: 627 DSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTN---DHTPSDENLRTTAS----LEPIG 679
DSVVGV+LTQNV+D+LSSSA+MSLAARFP S++ H D L +EP
Sbjct: 967 DSVVGVFLTQNVTDHLSSSAFMSLAARFPKNSSSMCKRHHKEDTRLVVNEPQVHIVEPEE 1026
Query: 680 SNSTS----NGAVYDS---------EGNMYFVTEPE----PDRCCELKDRDDAFDSRIQR 722
S N +VYD G V E P L D ++ S + +
Sbjct: 1027 STEWDVKLLNQSVYDQTSTIDMAEHSGEKEAVNSNESCGTPSSVISLTDESNSRLSELPQ 1086
Query: 723 KALQE-----------------------NGDIKVMTDAVPSQ--------AFDTSSVQSL 751
K ++E NGD K + D V SQ + D S+ Q+
Sbjct: 1087 KNIKEHCSPTRSGILSATIEEGEEKSCYNGDRKELNDIVSSQGSVFSSQISGDFSNDQNP 1146
Query: 752 DRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQ 811
++ NS+ +V SST N T FS L+ S + + + K++ S
Sbjct: 1147 EKIGSCSDSNSEVEVLSSTAKYNHFGSNTSFSKL--LEMVSSTKFYEDNSQKSE----SI 1200
Query: 812 NHITQSSVTQFWP--TGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILF 869
+ V F P T ST+D+ + + SS+ + Q+ T
Sbjct: 1201 ENSGMLEVNGFDPFKTEASTSDLKKKDENGMNRSSLQTTEPAGQVAITH----------- 1249
Query: 870 CDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSIS--SSDFNDPFEISVLPSNRESFRT 927
+ + P N Q S F +IS + D S L + + R
Sbjct: 1250 -SQSIASQVHPREQSNHQQQS----------FFNISGQTQDLMQKERGSGLGEQKNATRN 1298
Query: 928 GMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLR---RI 984
G + A K +GK K ++ +WD LR +
Sbjct: 1299 GTNEISSAPIKLKTKEQGKEKKDDF------------------------NWDSLRIDAQA 1334
Query: 985 YSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
+ E++ + MDS+DW+AVRCAD SEIA+ IKERG N +A RIK FLNRLVE H SID
Sbjct: 1335 KAGKREKTENTMDSLDWDAVRCADVSEIAETIKERGMNNRLAERIKNFLNRLVEEHESID 1394
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
LEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQP
Sbjct: 1395 LEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 1454
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
LP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC AC
Sbjct: 1455 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVFCTKSKPNCNAC 1514
Query: 1165 PLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVN----PIPVIRIEAD 1220
P+R EC+HFASA ASARFALPGP +K IV++ + I Q+P +++ P P + D
Sbjct: 1515 PMRAECRHFASAFASARFALPGPEQKSIVSTTGNSVINQNPSEIISQLHLPPPENTAQED 1574
Query: 1221 PVS--------ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRL 1272
+ ES ++IN C+PIIEEPR+P P+C + ES+ D +D D EIPT+ L
Sbjct: 1575 EIQLTEVSRQLESKFEINICQPIIEEPRTPEPECLQ--ESQTDIEDAFYEDSSEIPTINL 1632
Query: 1273 QEREFKENFPNFMEMNKVML--QDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF N N+M+ N + + S ALVAL +AAS+P KLK LRTEH VY LPD
Sbjct: 1633 NIEEFTLNLQNYMQENMELQGGEMSKALVALNPQAASIPMPKLKNVGRLRTEHCVYELPD 1692
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD--SKLCNSEICYSCNS 1388
H LL+G+D R+PDDP YLLAIW+PGE+ NS+ P+ C+S++ +LCN + C+SCNS
Sbjct: 1693 THPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESNCSSQEECGQLCNEKECFSCNS 1752
Query: 1389 VCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRR 1448
E N+ IVRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR I NL R
Sbjct: 1753 FREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPISVPRSWIWNLNR 1812
Query: 1449 EIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
V FG+S TT+F L ++ Q+ FWRG++CVRGFDR R PRPL+ RLH
Sbjct: 1813 RTVYFGTSVTTIFKGLTTQETQQCFWRGYICVRGFDREARAPRPLMARLH 1862
>gi|449456184|ref|XP_004145830.1| PREDICTED: uncharacterized protein LOC101216331 [Cucumis sativus]
Length = 1810
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/1039 (42%), Positives = 589/1039 (56%), Gaps = 107/1039 (10%)
Query: 518 DGPSNVHNA-VVPY-----QVGPSSEH---------GALVPH--QIKEKRKKLKPEVVLD 560
+G ++VH ++PY + EH GA+VPH + +KK V L+
Sbjct: 791 EGTASVHEKQIIPYARKGGKKNSKHEHNPNSLDGMQGAIVPHPKSLNSTKKKEFGRVYLE 850
Query: 561 PGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKP 620
P + +W +++ D + K++ E+WW+ ER+VF GRI +F A MHLILGDRRF P
Sbjct: 851 PRDITVWKVLIENDSNSEKEKID----EEWWENERKVFRGRINAFNAIMHLILGDRRFSP 906
Query: 621 WKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDH-----------TPSDENL 669
WKGSVVDSVVGV+LTQNVSD+LSSSAYMSLAA FPL T ++ T +E L
Sbjct: 907 WKGSVVDSVVGVFLTQNVSDHLSSSAYMSLAATFPLLETENYHGEEIFCIQQSTQRNERL 966
Query: 670 RTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSR-IQRKALQEN 728
S S +N A D P+ EL DDA S+ Q +++EN
Sbjct: 967 FLRESKWNNDSMMETNKATGD------------PEEAKELMSADDAISSQGCQGSSIKEN 1014
Query: 729 GDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNL 788
D+ +++ T ++LD T + K+ +SN +S ++ G+
Sbjct: 1015 HDLTLLSSTCLEDDCGTCLFKNLDDTDNLALHSDKSTFEKEPYSSNQDSTLS----CGSN 1070
Query: 789 KKNSV-----------NQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSK 837
KKN N + +N V +P SS + + + A S
Sbjct: 1071 KKNRTSEYKEVGWRDQNPISGNLNPSDTVHTPRSLGKCYSSAECISKSKSGLENNAEDSN 1130
Query: 838 TCI------------KESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDN 885
+C K S E Q + L+ D C E +G +++
Sbjct: 1131 SCEEMAVDLQFTPNEKSQGFIGSIEKFQNQEIQLIGDVNAKCSLCSESNEG-----KMEA 1185
Query: 886 GNQASTSGRND---LKSDFRSISSSDFNDPFEISVLPSNRES-FRTGMPQAHDATTTSKK 941
G+Q S+ N + D + S + SV+P++ + + +
Sbjct: 1186 GSQFSSDIDNSSLLVDFDVERVQSDE-------SVVPASENTNKAKEKEKKEVKGYLEDR 1238
Query: 942 SPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDW 1001
+P KE +D + K P+ + N++++ WD LRR + E RS D MDSVDW
Sbjct: 1239 NPNHLNDEKE--TDKGKAKKSKMKPEVDW-NSLREKWDSLRRKHPPCEPRSRDHMDSVDW 1295
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EAVR A+ ++IADAIKERGQ NIIAGRIK+FL+R LHG IDLEWLR+ PP VKEYLL
Sbjct: 1296 EAVRFAEPTKIADAIKERGQHNIIAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVKEYLL 1355
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+I+GLGLKSVEC+RLL+LQ +AFPVD+NVGRIAVRLGWVPL+PLP ++ +HLL+ +P+MD
Sbjct: 1356 EIDGLGLKSVECIRLLALQQVAFPVDINVGRIAVRLGWVPLEPLPEEVQMHLLETFPMMD 1415
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASAR 1181
IQ YLWPRL LDQ+TLYELHYQ+ITFGK+FC KR PNC ACPLR +C+H+ASA ASAR
Sbjct: 1416 SIQKYLWPRLSMLDQRTLYELHYQLITFGKVFCTKRKPNCNACPLRADCRHYASAYASAR 1475
Query: 1182 FALPGPSEKGIVTSEFGNGIGQSPPLVVNP-IPVIRIEADPVSESGYQINNCEPIIEEPR 1240
ALPG EKGIV++ + N ++ I+A+P S + +NCEPI+E P
Sbjct: 1476 LALPGLQEKGIVST-----MSSEKSFEGNTRASLLHIDANPFS-AECSTDNCEPIVEAPP 1529
Query: 1241 SPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVA 1300
SP P ES ++I +D D +++P +RL +F N ++ N + ALV
Sbjct: 1530 SPEPAHDESQLTDI--EDLYEYDSDDVPIIRLSSGQFTTTSLNCVD-NSI-----GALVP 1581
Query: 1301 LTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESP 1360
L AS+P RKLK LRTEH VY LPD H LL +RRDP+DP PYLL I SPGE+
Sbjct: 1582 LHPRVASIPMRKLKHIERLRTEHQVYELPDIHPLLSKLERRDPNDPCPYLLCILSPGETV 1641
Query: 1361 NSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTY 1419
+S P C ++ ++C+ C SCN V ++N+G V GTILIPCRTA RG+FPLNGTY
Sbjct: 1642 DSCEPPNTICMYREIGEICSEGSCSSCNIVRQQNSGAVHGTILIPCRTAMRGKFPLNGTY 1701
Query: 1420 FQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVC 1479
FQVNEVFAD ETS +PI +PR I +L R I FG+S TT+F L+ IQ F +GF+C
Sbjct: 1702 FQVNEVFADDETSKNPIQIPREWIWDLPRRIAYFGTSTTTIFRGLEKEDIQYCFQKGFIC 1761
Query: 1480 VRGFDRRYRCPRPLVNRLH 1498
VRGF+RR R P+ L RLH
Sbjct: 1762 VRGFNRRTRTPKRLTERLH 1780
>gi|449530536|ref|XP_004172250.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1176
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/983 (43%), Positives = 576/983 (58%), Gaps = 83/983 (8%)
Query: 539 GALVPH--QIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKERE 596
GA+VPH + +KK V L+P + +W +++ D + K++ E+WW+ ER+
Sbjct: 224 GAIVPHPKSLNSTKKKEFGRVYLEPRDITVWKVLIENDSNSEKEKID----EEWWENERK 279
Query: 597 VFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
VF GRI +F A MHLILGDRRF PWKGSVVDSVVGV+LTQNVSD+LSSSAYMSLAA FPL
Sbjct: 280 VFRGRINAFNAIMHLILGDRRFSPWKGSVVDSVVGVFLTQNVSDHLSSSAYMSLAATFPL 339
Query: 657 KSTNDH-----------TPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDR 705
T ++ T +E L S S +N A D P+
Sbjct: 340 LETENYHGEEVFCIQQSTQRNERLFLCESKWNNDSMMETNKATGD------------PEE 387
Query: 706 CCELKDRDDAFDSR-IQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKA 764
EL DDA S+ Q +++EN D+ +++ T ++LD T + K+
Sbjct: 388 AKELMSADDAISSQGCQGSSIKENHDLTLLSSTCLEDDCGTCLCKNLDDTDNLALHSDKS 447
Query: 765 DVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSK-ADVASPSQNHITQSSVTQFW 823
+SN +S ++ S N+ N+K A+ S S++ + ++
Sbjct: 448 TFEKEPYSSNQDSTLSCGS----------NKKIELQNTKSAECISKSKSGLENNA----- 492
Query: 824 PTGNSTADVASPSKTCIKESS--IAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPT 881
NS ++A + E S S E Q + L+ D C E +G
Sbjct: 493 EDSNSCEEMAVDLQFTPNEKSQGFIGSIEKFQNQEIELIGDVNAKCSLCSESNEG----- 547
Query: 882 RIDNGNQASTSGRND---LKSDFRSISSSDFNDPFEISVLPSNRES-FRTGMPQAHDATT 937
+++ G+Q S+ N + D + S + SV+P++ + +
Sbjct: 548 KMEAGSQFSSDIDNSSLLVDFDVERVQSDE-------SVVPASENTNKAKEKEKKEVKGY 600
Query: 938 TSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMD 997
++P KE +D + K P+ + N++++ WD LRR + E RS D MD
Sbjct: 601 LEDRNPNHLNDEKE--TDKGKAKKSKMKPEVDW-NSLREKWDSLRRKHPPCEPRSRDHMD 657
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
SVDWEAVR A+ ++IADAIKERGQ NIIAGRIK+FL+R LHG IDLEWLR+ PP VK
Sbjct: 658 SVDWEAVRFAEPTKIADAIKERGQHNIIAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVK 717
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
EYLL+I+GLGLKSVEC+RLL+LQ +AFPVD+NVGRIAVRLGWVPL+PLP ++ +HLL+ +
Sbjct: 718 EYLLEIDGLGLKSVECIRLLALQQVAFPVDINVGRIAVRLGWVPLEPLPEEVQMHLLETF 777
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
P+MD IQ YLWPRL LDQ+TLYELHYQ+ITFGK+FC KR PNC ACPLR +C+H+ASA
Sbjct: 778 PMMDSIQKYLWPRLSMLDQRTLYELHYQLITFGKVFCTKRKPNCNACPLRADCRHYASAY 837
Query: 1178 ASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNP-IPVIRIEADPVSESGYQINNCEPII 1236
ASAR ALPG EKGIV++ + N ++ I+A+P S + +NCEPI+
Sbjct: 838 ASARLALPGLQEKGIVST-----MSSGKSFEGNTRASLLHIDANPFS-AECSTDNCEPIV 891
Query: 1237 EEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSS 1296
E P SP P ES ++I +D D +++P +RL +F N ++ +
Sbjct: 892 EAPPSPEPAHDESQLTDI--EDLYEYDSDDVPIIRLSSGQFTTTSLNCVDGS------IG 943
Query: 1297 ALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSP 1356
ALV L AS+P RKLK LRTEH VY LPD H LL +RRDP+DP PYLL I SP
Sbjct: 944 ALVPLHPRVASIPMRKLKHIERLRTEHQVYELPDIHPLLSKLERRDPNDPCPYLLCILSP 1003
Query: 1357 GESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPL 1415
GE+ +S P C ++ ++C+ C SCN V ++N+G V GTILIPCRTA RG+FPL
Sbjct: 1004 GETVDSCEPPNTICMYREIGEICSEGSCSSCNIVRQQNSGAVHGTILIPCRTAMRGKFPL 1063
Query: 1416 NGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWR 1475
NGTYFQVNEVFAD ETS +PI +PR I +L R I FG+S TT+F L+ IQ F +
Sbjct: 1064 NGTYFQVNEVFADDETSKNPIQIPREWIWDLPRRIAYFGTSTTTIFRGLEKEDIQYCFQK 1123
Query: 1476 GFVCVRGFDRRYRCPRPLVNRLH 1498
GF+CVRGF+RR R P+ L RLH
Sbjct: 1124 GFICVRGFNRRTRTPKRLTERLH 1146
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1881
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/559 (59%), Positives = 408/559 (72%), Gaps = 23/559 (4%)
Query: 977 DWDLLR---RIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR + + E++ + MDS+DW+AVRCAD SEIA+ IKERG N +A RIK FL
Sbjct: 1295 DWDSLRIEAQAKAGKREKTDNTMDSLDWDAVRCADVSEIAETIKERGMNNRLADRIKNFL 1354
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLVE HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1355 NRLVEEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1414
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1415 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVF 1474
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVN--- 1210
C K PNC ACP+RGEC+HFASA ASAR ALPGP +K IV++ + I Q+P +++
Sbjct: 1475 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVSTTGNSVIDQNPSEIISQLH 1534
Query: 1211 -PIPVIRIEADPVS--------ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSI 1261
P P +AD + ES +IN C+PIIEEP +P P+C + +++I+D +
Sbjct: 1535 LPPPESTAQADDIQLTEVSRQLESKSEINICQPIIEEPTTPEPECLQVSQTDIEDAFYE- 1593
Query: 1262 GDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAH 1318
D+ EIPT+ L EF N N+M+ K+ LQ+ S ALVAL EAAS+P KLK +
Sbjct: 1594 -DLCEIPTINLNIEEFTMNLQNYMQ-EKMELQEAEMSKALVALNPEAASIPMPKLKNVSR 1651
Query: 1319 LRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD--SK 1376
LRTEH VY LPD H LL+G+D R+PDDP YLLAIW+PGE+ NS+ P+ +C+S++ +
Sbjct: 1652 LRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESKCSSQEECGQ 1711
Query: 1377 LCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPI 1436
LCN C+SCNS E N+ IVRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI
Sbjct: 1712 LCNENECFSCNSFREANSQIVRGTLLIPCRTATRGSFPLNGTYFQVNEVFADHDSSLNPI 1771
Query: 1437 NVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNR 1496
+VPR I NL R V FG+S TT+F L ++IQ+ FWRG+VCVRGFDR R PRPL+ R
Sbjct: 1772 SVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQEIQQCFWRGYVCVRGFDREARAPRPLMAR 1831
Query: 1497 LHCSPSKKEAGSKRSRDES 1515
LH SK +R++ ES
Sbjct: 1832 LHFPASKLAKTKERTKKES 1850
Score = 128 bits (322), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 509 QLPLQCNKADGPSNVHNAVVPYQVGPSSEHG--ALVPHQIKEKRKKLKPEVVLDPGTLRM 566
QL L D + NA+VPY+ S HG +VP IK ++ L+P+V LD T R+
Sbjct: 772 QLNLNTEVRDLAFHEQNALVPYKQQNSLIHGDGVIVPFHIK--KQHLRPKVDLDDETDRV 829
Query: 567 WNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
W L++ +D + ++ED KWW++ER VF GR SF ARMHL+ GDRRF WKGSVV
Sbjct: 830 WKLLL-LDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVV 888
Query: 627 DSVVGVYLTQNVSDNLSSSAYMSLAARFP 655
DSVVGV+LTQNV+D+LSSSA+MSLAARFP
Sbjct: 889 DSVVGVFLTQNVTDHLSSSAFMSLAARFP 917
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 2198
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/534 (60%), Positives = 400/534 (74%), Gaps = 10/534 (1%)
Query: 977 DWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + + G ERS D MDS+D+EA+RCA + I++AIKERG N++A RIK+FL
Sbjct: 1659 DWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNNMLAERIKDFL 1718
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR+ PPDK K+YLL I GLGLKSVECVRLL+L +AFPVD NVGRI
Sbjct: 1719 NRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLAFPVDTNVGRI 1778
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQ+ITFGK+F
Sbjct: 1779 AVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 1838
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA ASAR ALP P EK IV+S + ++P +NPIP
Sbjct: 1839 CTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADRNPTAFINPIP 1898
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ +E++ + + + CEPIIE P +P PQC E+ ES+I+D + D +EIPT++L
Sbjct: 1899 LPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYE--DPDEIPTIKLN 1956
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF N N+M+ N + LQ+ S ALVAL +A S+PT KLK + LRTEH VY LPD
Sbjct: 1957 FEEFTLNLQNYMQEN-MELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEHQVYELPD 2015
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSV 1389
+H LL+G D R+PDDPSPYLLAIW+PGE+ NS P+ RC S++ KLCN + C+SCNS+
Sbjct: 2016 SHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKTCFSCNSL 2075
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E N+ VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR I NL R
Sbjct: 2076 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAWIWNLPRR 2135
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T++F L IQ FWRGFVCVRGFD++ R PRPL+ RLH S +K
Sbjct: 2136 TVYFGTSVTSIFRGLPTEGIQYCFWRGFVCVRGFDQKSRAPRPLMARLHLSANK 2189
Score = 150 bits (380), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 21/171 (12%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKL 553
II + K L + D ++ S NA++ Y+ GA++P++IK ++K
Sbjct: 1107 IIERLKSLELNDTSNETV---------SQEENAIILYK-----GDGAIIPYEIK--KRKP 1150
Query: 554 KPEVVLDPGTLRMWNLIMNIDDGTTKD-QTSNEDMEKWWQKEREVFEGRIQSFTARMHLI 612
+P+V LD T R+W L+M G +D S+E KWW++EREVF GR SF ARMHL+
Sbjct: 1151 RPKVDLDLETERVWKLLM----GAEQDVGDSDERKAKWWEEEREVFRGRADSFIARMHLV 1206
Query: 613 LGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHT 663
GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSL +RFPL ++ T
Sbjct: 1207 QGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLVSRFPLHPESNKT 1257
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum]
Length = 1758
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/559 (57%), Positives = 406/559 (72%), Gaps = 24/559 (4%)
Query: 977 DWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + E++ MDS+DWEAVRCA+ EIA+ IKERG N++A RIK+FL
Sbjct: 1203 DWDSLRKQTEVNGRKREKTERTMDSLDWEAVRCAEVHEIAETIKERGMNNVLAQRIKDFL 1262
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1263 NRLVRDHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1322
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1323 AVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1382
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA ASAR ALPGP EK IV++ ++P ++++ +
Sbjct: 1383 CTKGKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENGTSDRNPAVIIDQLA 1442
Query: 1214 VIRIEADPVSESGYQ------------INNCEPIIEEPRSPGPQCSESPESEIDDDDFSI 1261
+ +++ + + YQ +N C+PIIEEP SP P+C++ E++I +D FS
Sbjct: 1443 LPLPQSNELLDRNYQSEANQHLQAASTVNKCDPIIEEPASPEPECTQVAENDI-EDMFS- 1500
Query: 1262 GDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAH 1318
D +EIPT++L EF + N+M+ N + LQ+ S ALVALTAEAAS+PT +LK
Sbjct: 1501 EDPDEIPTIKLNMEEFTQTLQNYMQ-NNIELQEGDMSKALVALTAEAASIPTPRLKNVNR 1559
Query: 1319 LRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKL 1377
LRTEH VY LPD+H LL D+R+PDDP YLLAIW+PGE+ NS+ P+ RCNS++ KL
Sbjct: 1560 LRTEHQVYELPDSHPLLNELDKREPDDPCKYLLAIWTPGETANSIQQPERRCNSQEHGKL 1619
Query: 1378 CNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPIN 1437
C+ E C+SCNS+ E + IVRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI
Sbjct: 1620 CDDETCFSCNSIQEAESQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIA 1679
Query: 1438 VPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRL 1497
VPR + NL R +V FG+S ++F L IQ FWRG+VCVRGFD++ R PRPL+ RL
Sbjct: 1680 VPREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARL 1739
Query: 1498 HCSPSK--KEAGSKRSRDE 1514
H S+ K G DE
Sbjct: 1740 HFPVSRLAKAKGKGAGEDE 1758
Score = 150 bits (378), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 113/174 (64%), Gaps = 23/174 (13%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNV----HNAVVPYQVGPSSEHGALVPHQIKEK 549
++ +F L I GS + Q A P N+ HNA+V Y+ G +VP + +
Sbjct: 623 LLEQFNQLDINREGSAIACQEQNALVPYNMIYQEHNALVVYR------DGTIVPF-VPTR 675
Query: 550 RKKLKPEVVLDPGTLRMWNLIM-NID----DGTTKDQTSNEDMEKWWQKEREVFEGRIQS 604
+++ +P+V LD T R+W L++ NI+ DGT +E+ KWW ER VF GR S
Sbjct: 676 KRRPRPKVDLDEETNRVWKLLLENINSEGIDGT------DEEKAKWW-AERRVFSGRADS 728
Query: 605 FTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
F ARMHL+ GDRRF PWKGSV+DSV+GV+LTQNVSD+LSSSA+MSLAARFP+KS
Sbjct: 729 FIARMHLVQGDRRFSPWKGSVLDSVIGVFLTQNVSDHLSSSAFMSLAARFPIKS 782
Score = 47.0 bits (110), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 35/141 (24%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHET-TRKRKYVRKNSV-SGNVVM 59
+ HRP+V+ EG P + P++P TPK P+ + ET T KRKYVRK++V +G ++
Sbjct: 137 RKHRPKVVTEGKPGR-------PRKPATPK---PDGSQETPTGKRKYVRKSTVKNGTSIL 186
Query: 60 ------DESVSKRRKCGRGNRQSNSDAII---------LLPPPPI----KTCRQALNFDL 100
++S KR+ R + N D+ I P + K CR+AL+FD
Sbjct: 187 PGVANAEKSTGKRKYVRR--KGLNKDSTIPTQEEGGKGATHPETLEHNKKPCRRALDFDT 244
Query: 101 ENQSRDDKAIIIAIPECGVQA 121
Q R++ + P C + +
Sbjct: 245 GGQEREESS--ACKPACNLNS 263
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1736
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/552 (58%), Positives = 403/552 (73%), Gaps = 11/552 (1%)
Query: 967 KKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKERGQQN 1023
K NS+ DWD LR+ + + G+ E+ D MDS+D+EA+R AD EI++AIKERG N
Sbjct: 1192 KVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADVREISNAIKERGMNN 1251
Query: 1024 IIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
++A RIKEFLNRLV HGSIDLEWLR+VPPDK K+YLL + GLGLKSVECVRLL+L H+A
Sbjct: 1252 MLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLKSVECVRLLTLHHLA 1311
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
FPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELH
Sbjct: 1312 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 1371
Query: 1144 YQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQ 1203
YQ+ITFGK+FC K PNC ACP+RGECKHFASA ASAR ALP P EKGIV S +
Sbjct: 1372 YQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDEKGIVASTNPMSTEK 1431
Query: 1204 SPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGD 1263
PP+V NP+P++ E +E+ + CEPI+E P +P P+ +E ES+I+D + D
Sbjct: 1432 QPPIVTNPLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPNEITESDIEDAFYE--D 1489
Query: 1264 IEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEH 1323
+EIPT++L EFK +++ + S ALVAL EAA +PT KLK + LRTEH
Sbjct: 1490 PDEIPTIKLSMEEFKTTLQHYIPEGDM----SKALVALNPEAAFIPTPKLKNVSRLRTEH 1545
Query: 1324 HVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEI 1382
VY LPD+H LLR DRR+PDDPSPYLLAIW+PGE+ NS+ P+ C S+D ++LCN
Sbjct: 1546 QVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPEQSCGSQDPNRLCNEIT 1605
Query: 1383 CYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHT 1442
C++CNS E N+ VRGT+L+PCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR
Sbjct: 1606 CFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMFADHESSMKPIDVPRKW 1665
Query: 1443 IANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPS 1502
+ NL R V FG+S +T+F L +IQ+ FWRGFVCVRGFD++ R PRPL+ RLH P+
Sbjct: 1666 LWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRGFVCVRGFDQKTRAPRPLIARLHF-PA 1724
Query: 1503 KKEAGSKRSRDE 1514
K A K + E
Sbjct: 1725 SKLAKVKNGQTE 1736
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 37/312 (11%)
Query: 493 DIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKE--KR 550
+I+ K K L++ D + + NA+VPY+ +GA+VP+ E ++
Sbjct: 654 EILHKMKRLSLNDHEVSIRSE----------QNAIVPYK-----GNGAVVPYVESEYLRK 698
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
+K +P V +DP T R+WNL+M +G+ ++ +D EKWW++ER+VF GR SF ARMH
Sbjct: 699 RKARPRVDIDPETERIWNLLMG-KEGSEGIESHEKDKEKWWEEERKVFRGRADSFIARMH 757
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLR 670
L+ GDRRF WKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFP+KS + NLR
Sbjct: 758 LVQGDRRFSRWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPVKSAS-------NLR 810
Query: 671 TTASLE-PIGSNSTSNGAVYDSEGNMYFVTEPEPDRC----CELKDRDDAFDSRIQRKAL 725
T +E I +N ++ +Y +E + V E R + ++ +S ++
Sbjct: 811 TQGEVETSIVANESAACVLYPAESIRWHVQELSVPRFEMPQTSINHQNQIANSGTEKIFT 870
Query: 726 QENGDIKVMTDAVPSQ-AFDTSSVQSLDRTQLFPTGNSKAD---VASSTKTSNAESF--I 779
+ G I V + + SQ +FD++ Q + NS+A+ V+ ++ +++ +F I
Sbjct: 871 ELGGQI-VEEEVISSQDSFDSTITQGTAGARSCSGSNSEAEEPIVSYNSSSTHYSNFTDI 929
Query: 780 TQFSHTGNLKKN 791
Q T ++K+
Sbjct: 930 KQMETTATIQKS 941
Score = 43.5 bits (101), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 27/101 (26%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHET-TRKRKYVRKNSVSGNVVMD 60
+ HRP+V+ EG PKK +PKPVTP + ET + KRKYVRK ++
Sbjct: 165 RKHRPKVIKEGKPKK------------SPKPVTPKISKETPSGKRKYVRKKNIKEATTPP 212
Query: 61 ESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLE 101
+V + + + K+CR+ ++F++E
Sbjct: 213 ANVVEIKDSNTATK--------------TKSCRRVIHFEME 239
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1679
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/552 (58%), Positives = 403/552 (73%), Gaps = 11/552 (1%)
Query: 967 KKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKERGQQN 1023
K NS+ DWD LR+ + + G+ E+ D MDS+D+EA+R AD EI++AIKERG N
Sbjct: 1135 KVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADVREISNAIKERGMNN 1194
Query: 1024 IIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
++A RIKEFLNRLV HGSIDLEWLR+VPPDK K+YLL + GLGLKSVECVRLL+L H+A
Sbjct: 1195 MLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLKSVECVRLLTLHHLA 1254
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
FPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELH
Sbjct: 1255 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 1314
Query: 1144 YQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQ 1203
YQ+ITFGK+FC K PNC ACP+RGECKHFASA ASAR ALP P EKGIV S +
Sbjct: 1315 YQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDEKGIVASTNPMSTEK 1374
Query: 1204 SPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGD 1263
PP+V NP+P++ E +E+ + CEPI+E P +P P+ +E ES+I+D + D
Sbjct: 1375 QPPIVTNPLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPNEITESDIEDAFYE--D 1432
Query: 1264 IEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEH 1323
+EIPT++L EFK +++ + S ALVAL EAA +PT KLK + LRTEH
Sbjct: 1433 PDEIPTIKLSMEEFKTTLQHYIPEGDM----SKALVALNPEAAFIPTPKLKNVSRLRTEH 1488
Query: 1324 HVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEI 1382
VY LPD+H LLR DRR+PDDPSPYLLAIW+PGE+ NS+ P+ C S+D ++LCN
Sbjct: 1489 QVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPEQSCGSQDPNRLCNEIT 1548
Query: 1383 CYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHT 1442
C++CNS E N+ VRGT+L+PCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR
Sbjct: 1549 CFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMFADHESSMKPIDVPRKW 1608
Query: 1443 IANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPS 1502
+ NL R V FG+S +T+F L +IQ+ FWRGFVCVRGFD++ R PRPL+ RLH P+
Sbjct: 1609 LWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRGFVCVRGFDQKTRAPRPLIARLHF-PA 1667
Query: 1503 KKEAGSKRSRDE 1514
K A K + E
Sbjct: 1668 SKLAKVKNGQTE 1679
Score = 170 bits (430), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 37/312 (11%)
Query: 493 DIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKE--KR 550
+I+ K K L++ D + + NA+VPY+ +GA+VP+ E ++
Sbjct: 597 EILHKMKRLSLNDHEVSIRSE----------QNAIVPYK-----GNGAVVPYVESEYLRK 641
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
+K +P V +DP T R+WNL+M +G+ ++ +D EKWW++ER+VF GR SF ARMH
Sbjct: 642 RKARPRVDIDPETERIWNLLMG-KEGSEGIESHEKDKEKWWEEERKVFRGRADSFIARMH 700
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLR 670
L+ GDRRF WKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFP+KS + NLR
Sbjct: 701 LVQGDRRFSRWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPVKSAS-------NLR 753
Query: 671 TTASLE-PIGSNSTSNGAVYDSEGNMYFVTEPEPDRC----CELKDRDDAFDSRIQRKAL 725
T +E I +N ++ +Y +E + V E R + ++ +S ++
Sbjct: 754 TQGEVETSIVANESAACVLYPAESIRWHVQELSVPRFEMPQTSINHQNQIANSGTEKIFT 813
Query: 726 QENGDIKVMTDAVPSQ-AFDTSSVQSLDRTQLFPTGNSKAD---VASSTKTSNAESF--I 779
+ G I V + + SQ +FD++ Q + NS+A+ V+ ++ +++ +F I
Sbjct: 814 ELGGQI-VEEEVISSQDSFDSTITQGTAGARSCSGSNSEAEEPIVSYNSSSTHYSNFTDI 872
Query: 780 TQFSHTGNLKKN 791
Q T ++K+
Sbjct: 873 KQMETTATIQKS 884
Score = 43.5 bits (101), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 27/101 (26%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHET-TRKRKYVRKNSVSGNVVMD 60
+ HRP+V+ EG PKK +PKPVTP + ET + KRKYVRK ++
Sbjct: 108 RKHRPKVIKEGKPKK------------SPKPVTPKISKETPSGKRKYVRKKNIKEATTPP 155
Query: 61 ESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLE 101
+V + + + K+CR+ ++F++E
Sbjct: 156 ANVVEIKDSNTATK--------------TKSCRRVIHFEME 182
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera]
Length = 1621
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/534 (60%), Positives = 400/534 (74%), Gaps = 10/534 (1%)
Query: 977 DWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + + G ERS D MDS+D+EA+RCA + I++AIKERG N++A RIK+FL
Sbjct: 1082 DWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNNMLAERIKDFL 1141
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR+ PPDK K+YLL I GLGLKSVECVRLL+L +AFPVD NVGRI
Sbjct: 1142 NRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLAFPVDTNVGRI 1201
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQ+ITFGK+F
Sbjct: 1202 AVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 1261
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA ASAR ALP P EK IV+S + ++P +NPIP
Sbjct: 1262 CTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADRNPTAFINPIP 1321
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ +E++ + + + CEPIIE P +P PQC E+ ES+I+D + D +EIPT++L
Sbjct: 1322 LPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYE--DPDEIPTIKLN 1379
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF N N+M+ N + LQ+ S ALVAL +A S+PT KLK + LRTEH VY LPD
Sbjct: 1380 FEEFTLNLQNYMQEN-MELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEHQVYELPD 1438
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSV 1389
+H LL+G D R+PDDPSPYLLAIW+PGE+ NS P+ RC S++ KLCN + C+SCNS+
Sbjct: 1439 SHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKTCFSCNSL 1498
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E N+ VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR I NL R
Sbjct: 1499 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAWIWNLPRR 1558
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T++F L IQ FWRGFVCVRGFD++ R PRPL+ RLH S +K
Sbjct: 1559 TVYFGTSVTSIFRGLPTEGIQYCFWRGFVCVRGFDQKSRAPRPLMARLHLSANK 1612
Score = 150 bits (380), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 21/171 (12%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKL 553
II + K L + D ++ S NA++ Y+ GA++P++IK ++K
Sbjct: 782 IIERLKSLELNDTSNETV---------SQEENAIILYK-----GDGAIIPYEIK--KRKP 825
Query: 554 KPEVVLDPGTLRMWNLIMNIDDGTTKD-QTSNEDMEKWWQKEREVFEGRIQSFTARMHLI 612
+P+V LD T R+W L+M G +D S+E KWW++EREVF GR SF ARMHL+
Sbjct: 826 RPKVDLDLETERVWKLLM----GAEQDVGDSDERKAKWWEEEREVFRGRADSFIARMHLV 881
Query: 613 LGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHT 663
GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSL +RFPL ++ T
Sbjct: 882 QGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLVSRFPLHPESNKT 932
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum]
Length = 1796
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/585 (56%), Positives = 406/585 (69%), Gaps = 45/585 (7%)
Query: 958 NDRTKKTTPKKNSDNTVQQDWDLLR-RIYSTGE--ERSHDKMDSVDWEAVRCADESEIAD 1014
N + KK P K N DWD LR + + G+ ER+ + MDS+DWEAVRCAD +EIA
Sbjct: 1230 NTKAKKERPGKEKQNV---DWDSLRLQAQNNGKKRERTANTMDSLDWEAVRCADVNEIAH 1286
Query: 1015 AIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 1074
I+ERG N++A RIK+FLNR+ HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECV
Sbjct: 1287 TIRERGMNNMLAERIKDFLNRIFREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECV 1346
Query: 1075 RLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYL 1134
RLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC L
Sbjct: 1347 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 1406
Query: 1135 DQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVT 1194
DQ+TLYELHY MITFGK+FC K PNC ACPLRGEC+HFASA ASAR ALP P EK IV+
Sbjct: 1407 DQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPAPEEKSIVS 1466
Query: 1195 SEFGNGIGQSP---------PL------------VVNPIPVIRIEADPVSESGYQINNCE 1233
+ GQ+P PL ++N P+I + A P E
Sbjct: 1467 ATENKAAGQNPFQNFSQLLLPLPQADQTPLEHSKLINSAPIIEVPATP-----------E 1515
Query: 1234 PIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVM-- 1291
PI+EEP SP P+ +PE +I+D F D EIPT+ L EF +N FME N +
Sbjct: 1516 PIVEEPASPEPE-QNAPEVDIEDAYFE--DPNEIPTITLNMAEFTQNVKKFMENNMELQQ 1572
Query: 1292 LQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLL 1351
++ S ALVALT EAAS+P KLK + LRTEH VY L D+H LL GFD+R+PDDP YLL
Sbjct: 1573 VEMSKALVALTPEAASIPVPKLKHISRLRTEHQVYELSDSHPLLEGFDKREPDDPCSYLL 1632
Query: 1352 AIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANR 1410
AIW+PGE+ +S+ P +CNS+++ +LC+ E C++CNS+ E ++ VRGTILIPCRTA R
Sbjct: 1633 AIWTPGETADSIHPPAIKCNSQEAGRLCDDETCFACNSLREAHSQTVRGTILIPCRTAMR 1692
Query: 1411 GRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQ 1470
G FPLNGTYFQVNEVFADH++S +PI+VPR + NL R V FG+S T+F L IQ
Sbjct: 1693 GSFPLNGTYFQVNEVFADHDSSLNPIDVPRDWLWNLPRRTVYFGTSIPTIFKGLTTESIQ 1752
Query: 1471 EYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDES 1515
FWRGFVCVRGFD++ R PRPL+ RLH P+ + + +K DE+
Sbjct: 1753 HCFWRGFVCVRGFDKKTRAPRPLMARLHF-PASRLSRTKGKPDEN 1796
Score = 123 bits (309), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 97/135 (71%), Gaps = 7/135 (5%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKE-KRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
NA+V Y+ G++VP +R+K +P+V LD T R+W L++ + D T
Sbjct: 737 NALVIYR-----RDGSIVPFAGSFIRRRKPRPKVDLDDETTRVWKLLLQDINSEGIDGT- 790
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
+ED KWW++ER VF GR+ SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 791 DEDKAKWWEEERGVFHGRVDSFVARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLS 850
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAA+FPLKS
Sbjct: 851 SSAFMSLAAQFPLKS 865
>gi|225440992|ref|XP_002277401.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 1942
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/551 (58%), Positives = 399/551 (72%), Gaps = 11/551 (1%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAI 1016
+ KK ++ NT+ WD LR+ + ER+ + MDS+DWEAVRC+D +EIA+ I
Sbjct: 1385 KAKKGKARREEKNTLH--WDNLRKEAQVNGRKRERTVNTMDSLDWEAVRCSDVNEIANTI 1442
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
KERG N++A RIK+FLNRLV HGSIDLEWLR+VPPDK KEYLL GLGLKSVECVRL
Sbjct: 1443 KERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 1502
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ
Sbjct: 1503 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 1562
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
+TLYELHYQMITFGK+FC K PNC ACP+RGEC+HFASA ASAR AL GP E+ IV++
Sbjct: 1563 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALTGPEERSIVSTN 1622
Query: 1197 FGNGIGQSPPLVVNPIPVIRIEADP-VSESGYQINNCEPIIEEPRSPGPQCSESPESEID 1255
+ +P + +NP+P+ SE+ INNCEPI+E P +P + + ES+I+
Sbjct: 1623 ANESMDGNPDVTINPLPLPPPLPQKQSSEANPGINNCEPIVEVPATPEQEHPQILESDIE 1682
Query: 1256 DDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKL 1313
D + D +EIPT++L EF N N+M+ N + + S ALVALT E AS+P KL
Sbjct: 1683 DTLYE--DPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALTPEVASIPMPKL 1740
Query: 1314 KRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK 1373
K + LRTEHHVY LPD+H LL G D+R+PDDP YLLAIW+PGE+ NS+ P+ C+S+
Sbjct: 1741 KNVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETANSIQPPERTCSSQ 1800
Query: 1374 DS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
+S LC+ + C+SCNS+ E N+ VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S
Sbjct: 1801 ESGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 1860
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
+PI+VPR I NL R V FG+S T+F L IQ FWRGFVCVRGFD++ R PRP
Sbjct: 1861 LNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEDIQYCFWRGFVCVRGFDQKTRAPRP 1920
Query: 1493 LVNRLHCSPSK 1503
L+ RLH S+
Sbjct: 1921 LMARLHFPASR 1931
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 26/186 (13%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVH----NAVVPYQVGPSSEHGALVPHQIK-- 547
II + K L I + S++ Q A P N++ NA+V Y+ G +VP +
Sbjct: 822 IIEQLKHLDI-NRESKISYQEQNALVPYNMNKEEKNALVLYK-----RDGTIVPFEDSFG 875
Query: 548 -EKRKKLKPEVVLDPGTLRMWNLIM-NID----DGTTKDQTSNEDMEKWWQKEREVFEGR 601
K+++ +P V LD T R+W L+M NI+ DGT +++ ++ER VF GR
Sbjct: 876 LVKKRRPRPRVDLDEETSRVWKLLMGNINSEGIDGTDEEKAKWW------EEERNVFRGR 929
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTND 661
SF ARMHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+MSLAA FP K +
Sbjct: 930 ADSFIARMHLVQGDRRFSKWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAAHFPCKC--N 987
Query: 662 HTPSDE 667
H PS E
Sbjct: 988 HRPSTE 993
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 40/136 (29%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTP---NRAHETTRKRKYVRKNSV----- 53
K HRP+V++EG PK +TPKPV P T KRKYVRKN V
Sbjct: 336 KKHRPKVVIEGKPK------------RTPKPVNPKCTGSQGNPTGKRKYVRKNGVNKPST 383
Query: 54 -SGNVVMDESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLENQSRDDKAIII 112
S +M S R P + +CR+ LNFD ++R + I
Sbjct: 384 NSPAEIMGRSTEPER-----------------PERTMMSCRRGLNFDDNGRARGGSSSCI 426
Query: 113 AIPECGV--QALDECA 126
+ + QA D C
Sbjct: 427 STSDLNSEPQAQDFCT 442
>gi|297740062|emb|CBI30244.3| unnamed protein product [Vitis vinifera]
Length = 1470
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/551 (58%), Positives = 399/551 (72%), Gaps = 11/551 (1%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAI 1016
+ KK ++ NT+ WD LR+ + ER+ + MDS+DWEAVRC+D +EIA+ I
Sbjct: 913 KAKKGKARREEKNTLH--WDNLRKEAQVNGRKRERTVNTMDSLDWEAVRCSDVNEIANTI 970
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
KERG N++A RIK+FLNRLV HGSIDLEWLR+VPPDK KEYLL GLGLKSVECVRL
Sbjct: 971 KERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 1030
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ
Sbjct: 1031 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 1090
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
+TLYELHYQMITFGK+FC K PNC ACP+RGEC+HFASA ASAR AL GP E+ IV++
Sbjct: 1091 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALTGPEERSIVSTN 1150
Query: 1197 FGNGIGQSPPLVVNPIPVIRIEADP-VSESGYQINNCEPIIEEPRSPGPQCSESPESEID 1255
+ +P + +NP+P+ SE+ INNCEPI+E P +P + + ES+I+
Sbjct: 1151 ANESMDGNPDVTINPLPLPPPLPQKQSSEANPGINNCEPIVEVPATPEQEHPQILESDIE 1210
Query: 1256 DDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKL 1313
D + D +EIPT++L EF N N+M+ N + + S ALVALT E AS+P KL
Sbjct: 1211 DTLYE--DPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALTPEVASIPMPKL 1268
Query: 1314 KRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK 1373
K + LRTEHHVY LPD+H LL G D+R+PDDP YLLAIW+PGE+ NS+ P+ C+S+
Sbjct: 1269 KNVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETANSIQPPERTCSSQ 1328
Query: 1374 DS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
+S LC+ + C+SCNS+ E N+ VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S
Sbjct: 1329 ESGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 1388
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
+PI+VPR I NL R V FG+S T+F L IQ FWRGFVCVRGFD++ R PRP
Sbjct: 1389 LNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEDIQYCFWRGFVCVRGFDQKTRAPRP 1448
Query: 1493 LVNRLHCSPSK 1503
L+ RLH S+
Sbjct: 1449 LMARLHFPASR 1459
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 26/186 (13%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVH----NAVVPYQVGPSSEHGALVPHQIK-- 547
II + K L I + S++ Q A P N++ NA+V Y+ G +VP +
Sbjct: 556 IIEQLKHLDI-NRESKISYQEQNALVPYNMNKEEKNALVLYK-----RDGTIVPFEDSFG 609
Query: 548 -EKRKKLKPEVVLDPGTLRMWNLIM-NID----DGTTKDQTSNEDMEKWWQKEREVFEGR 601
K+++ +P V LD T R+W L+M NI+ DGT +++ ++ER VF GR
Sbjct: 610 LVKKRRPRPRVDLDEETSRVWKLLMGNINSEGIDGTDEEKAKWW------EEERNVFRGR 663
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTND 661
SF ARMHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+MSLAA FP K +
Sbjct: 664 ADSFIARMHLVQGDRRFSKWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAAHFPCKC--N 721
Query: 662 HTPSDE 667
H PS E
Sbjct: 722 HRPSTE 727
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 40/136 (29%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTP---NRAHETTRKRKYVRKNSV----- 53
K HRP+V++EG PK +TPKPV P T KRKYVRKN V
Sbjct: 98 KKHRPKVVIEGKPK------------RTPKPVNPKCTGSQGNPTGKRKYVRKNGVNKPST 145
Query: 54 -SGNVVMDESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLENQSRDDKAIII 112
S +M S R P + +CR+ LNFD ++R + I
Sbjct: 146 NSPAEIMGRSTEPER-----------------PERTMMSCRRGLNFDDNGRARGGSSSCI 188
Query: 113 AIPECGV--QALDECA 126
+ + QA D C
Sbjct: 189 STSDLNSEPQAQDFCT 204
>gi|218187756|gb|EEC70183.1| hypothetical protein OsI_00912 [Oryza sativa Indica Group]
Length = 1952
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/576 (56%), Positives = 397/576 (68%), Gaps = 28/576 (4%)
Query: 959 DRTKKTTPKKNSDNTVQQDWDLLRR--IYSTG-EERSHDKMDSVDWEAVRCADESEIADA 1015
D +K P+ + DWD+LR+ +YS G +ERS + DS+DWE +R A+ EI+D
Sbjct: 1384 DGSKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDT 1443
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
I+ERG N++A RIK+FLNRLV HGSIDLEWLR V DK K+YLL I GLGLKSVECVR
Sbjct: 1444 IRERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECVR 1503
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
LL+L H+AFPVD NVGRI VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LD
Sbjct: 1504 LLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQKYLWPRLCKLD 1563
Query: 1136 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS 1195
Q+TLYELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR ALPGP EK +VTS
Sbjct: 1564 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTS 1623
Query: 1196 EFGNGIGQSPPLVVNPIPVIRIEADPV--------SESGYQINNCEPIIEEPRSPGPQCS 1247
P+ I + PV + + +NN +PIIEEP SP P+
Sbjct: 1624 --------GTPIAAETFHQTYISSRPVVSQLEWNSNTCHHGMNNRQPIIEEPASPEPEHE 1675
Query: 1248 ESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAE 1304
E +D + D EEIPT++L EF +N ++M+ N + ++D S ALVA+T E
Sbjct: 1676 TEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIEDADMSKALVAITPE 1735
Query: 1305 AASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVG 1364
AS+PT KLK + LRTEH VY LPD+H LL GF++R+PDDP PYLL+IW+PGE+ S
Sbjct: 1736 VASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLLSIWTPGETAQSTD 1795
Query: 1365 SPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVN 1423
+P+ CNS+++ +LC S C+SCNS+ E A VRGT+LIPCRTA RG FPLNGTYFQVN
Sbjct: 1796 APKSVCNSQENGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVN 1855
Query: 1424 EVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGF 1483
EVFADH++S +PI+VPR I NL R V FG+S T+F L +IQ FWRGFVCVRGF
Sbjct: 1856 EVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGF 1915
Query: 1484 DRRYRCPRPLVNRLHCSPS-----KKEAGSKRSRDE 1514
DR R PRPL RLH S KK AGS RD+
Sbjct: 1916 DRTSRAPRPLYARLHFPASKITRNKKSAGSAPGRDD 1951
Score = 137 bits (345), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 110/164 (67%), Gaps = 7/164 (4%)
Query: 512 LQCNKADGPSNV--HNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNL 569
L NK++ P H A+VPY + E G +VP + K KRK+ + +V LDP T MW L
Sbjct: 824 LDINKSEDPVTAEPHGALVPY----NGEFGPIVPFEGKVKRKRSRAKVDLDPVTALMWKL 879
Query: 570 IMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSV 629
+M D + ++D EKW +ER++F+GR+ SF ARMHL+ GDRRF PWKGSVVDSV
Sbjct: 880 LMGPDMSDCAEGM-DKDKEKWLNEERKIFQGRVDSFIARMHLVQGDRRFSPWKGSVVDSV 938
Query: 630 VGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTA 673
VGV+LTQNVSD+LSSSA+M+LAA+FP+K P++ T +
Sbjct: 939 VGVFLTQNVSDHLSSSAFMALAAKFPVKPEASEKPANVMFHTIS 982
>gi|449440467|ref|XP_004138006.1| PREDICTED: uncharacterized protein LOC101222935 [Cucumis sativus]
Length = 1849
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/583 (56%), Positives = 410/583 (70%), Gaps = 25/583 (4%)
Query: 950 KEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRC 1006
KE K ++K+ +K++ N WD LR+ T +R+ D MDS+DWEA+RC
Sbjct: 1274 KELKPASSRSQSKQVAKEKDNIN-----WDNLRKRTETNGKTRQRTEDTMDSLDWEAIRC 1328
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +EIA AI+ERG N++A RIK+FLNRLV+ HGSIDLEWLR+V PD+ KEYLL I GL
Sbjct: 1329 ADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRGL 1388
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
GLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ Y
Sbjct: 1389 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 1448
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 1186
LWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+RGEC+HFASA ASAR LP
Sbjct: 1449 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLPA 1508
Query: 1187 PSEKGIVTS----EFGNGIGQS---PPLVVNPIPVIRIEADPV----SESGYQINNCEPI 1235
P +K IV++ E N ++ P L + P + +E P S+ C PI
Sbjct: 1509 PEDKRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVPI 1568
Query: 1236 IEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD- 1294
IEEP +P Q + + ++ ID +D D +EIPT++L EF +N N+++ N + LQ+
Sbjct: 1569 IEEPATP-EQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKN-MELQEG 1626
Query: 1295 --SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLA 1352
S AL+ALT EAAS+PT KLK + LRTEH VY LPD H LL DRR+PDDPS YLLA
Sbjct: 1627 DMSKALIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLDRREPDDPSSYLLA 1686
Query: 1353 IWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRG 1411
IW+PGE+ NS+ P+ RC+S++ +LC E C SCNSV E N+ +VRGT+LIPCRTA RG
Sbjct: 1687 IWTPGETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAMRG 1746
Query: 1412 RFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQE 1471
FPLNGTYFQVNEVFADHE+S +PI+VPR I NL R V FG+S T+F L + IQ
Sbjct: 1747 SFPLNGTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGIQH 1806
Query: 1472 YFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
FWRGFVCVRGFD++ R PRPL+ RLH SK G ++ D+
Sbjct: 1807 CFWRGFVCVRGFDQKTRAPRPLMARLHFPASKLNRGRGKTEDQ 1849
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 96/135 (71%), Gaps = 7/135 (5%)
Query: 524 HNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
HNA+V Y G +VP +KR+ +P+V LD T R+W L+M + D T
Sbjct: 786 HNAIVVY-----GRDGTIVPFNPIKKRRP-RPKVELDEETGRVWKLLMGNINSKGIDGTD 839
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
E++ KWW++ER+VF+GR SF ARMHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 840 EENI-KWWEEERKVFQGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLS 898
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAARFP KS
Sbjct: 899 SSAFMSLAARFPPKS 913
>gi|356533903|ref|XP_003535497.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1915
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/558 (56%), Positives = 400/558 (71%), Gaps = 13/558 (2%)
Query: 953 KSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADE 1009
KS +K + +K P+ ++ + DWD LR+ + T +ERS D MDS+D+EAVRCA
Sbjct: 1356 KSQIKVSKARKEKPE--TEKKLASDWDKLRKEVQVNGTEKERSMDTMDSLDYEAVRCASV 1413
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IKERG N++A RIKEFL+RLV HGSIDLEWLR+VP DK K++LL GLGLK
Sbjct: 1414 KEISKTIKERGMNNLLAERIKEFLDRLVTEHGSIDLEWLRHVPQDKAKDFLLSFRGLGLK 1473
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
SVECVRLL+LQ+IAFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ +Q YLWP
Sbjct: 1474 SVECVRLLTLQNIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLEAVQKYLWP 1533
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSE 1189
RLC LDQ+TLYELHYQMITFGK+FC K+ P C ACP+R EC+HFASA ASAR ALPGP E
Sbjct: 1534 RLCKLDQRTLYELHYQMITFGKVFCTKKKPKCNACPMRAECRHFASAFASARLALPGPEE 1593
Query: 1190 KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSES 1249
K IV+ ++ + NP+ + +E + + Q CEPIIEEP +P + +E+
Sbjct: 1594 KHIVSMHVPIAAERNYFVNENPMVLPLLENNLSRQVSPQSWQCEPIIEEPATPEREWTEA 1653
Query: 1250 PESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFM----EMNKVMLQDSSALVALTAEA 1305
ES++ +DF D +EI ++ L ++ N N++ E N+ + S ALVAL +
Sbjct: 1654 EESDM--EDFFKEDSDEILSIDLNAKKSTVNVQNYLQEYNEHNEGCM--SKALVALNPRS 1709
Query: 1306 ASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGS 1365
AS+PT KLK + LRTEH VY LPD+H LL D+R+PDDPSPYLLAIW+PGE+PNSV
Sbjct: 1710 ASIPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGETPNSVEP 1769
Query: 1366 PQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEV 1425
P+ RC S+DS LCN C+SCNS+ E N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+
Sbjct: 1770 PERRCGSQDSALCNDNTCFSCNSIREANSQTVRGTLLIPCRTATRGSFPLNGTYFQVNEL 1829
Query: 1426 FADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDR 1485
FADH +S PI++PR I NL R V FG+S +++F L ++IQ FWRGFVCVRGFD+
Sbjct: 1830 FADHASSVQPIDIPREWIWNLPRRTVYFGTSVSSIFKDLSTQEIQHCFWRGFVCVRGFDQ 1889
Query: 1486 RYRCPRPLVNRLHCSPSK 1503
+ R PRPL RLH S S+
Sbjct: 1890 KERAPRPLQARLHFSASR 1907
Score = 148 bits (374), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 112/179 (62%), Gaps = 14/179 (7%)
Query: 493 DIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKK 552
+II + DL +R+ ++ KA P N +VVPYQ E L K+ K
Sbjct: 821 EIICRPNDLKLRESNMS-EMEGLKALVPYNGDRSVVPYQ-----EFELL-------KKHK 867
Query: 553 LKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLI 612
+P+V LD T R W L+M G+ + ++++ EKWW KER VF GR+ SF ARMHLI
Sbjct: 868 PRPKVDLDAETERTWKLLMG-KVGSEGLEETDKEKEKWWDKERNVFHGRVDSFIARMHLI 926
Query: 613 LGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRT 671
GDRRF WKGSVVDSV+GV+LTQNVSD+LSSSA+MSLA+RFPL+S + D + T
Sbjct: 927 QGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLASRFPLQSKSSKKTYDVDTNT 985
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 32/133 (24%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNV-VMD 60
+ HRP+V+ E PK+ PKP Q K +KRKYVRK + + V++
Sbjct: 452 RKHRPKVIKEAKPKRTPKPATQKTQVK----------ENLHKKRKYVRKTAATPQTDVIE 501
Query: 61 ESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLENQSRDDKAIIIAIPECGVQ 120
ESV D+I+ K+CR+ALNFDLE+ ++ I E +
Sbjct: 502 ESV---------------DSIVATK----KSCRRALNFDLEHNKYASQSTIGCQQE--IN 540
Query: 121 ALDECAFTKATEH 133
+E AF ++H
Sbjct: 541 HRNEKAFNTTSDH 553
>gi|356574657|ref|XP_003555462.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1851
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/557 (57%), Positives = 395/557 (70%), Gaps = 10/557 (1%)
Query: 953 KSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADE 1009
KS +K + +K P+ ++ DWD LR+ I +ERS D MDS+D+EA+RCA
Sbjct: 1279 KSKIKVSKERKAKPE--TEKKHASDWDKLRKEVQINRIEKERSTDTMDSLDYEAIRCASV 1336
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IKERG N++A RIKEFLNRLV HGSIDLEWLR+VP DK K+YLL GLGLK
Sbjct: 1337 KEISKTIKERGMNNMLAERIKEFLNRLVTEHGSIDLEWLRHVPQDKAKDYLLSFRGLGLK 1396
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
SVECVRLL+L HIAFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ +Q YLWP
Sbjct: 1397 SVECVRLLTLHHIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLETVQKYLWP 1456
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSE 1189
RLC LDQ+TLYELHYQMITFGK+FC K+ PNC ACP+R EC+HFASA ASAR ALPGP E
Sbjct: 1457 RLCKLDQRTLYELHYQMITFGKVFCTKKKPNCNACPMRAECRHFASAFASARLALPGPEE 1516
Query: 1190 KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSES 1249
K IV+ ++ + NP+ + +E + + + CEPIIEEP +P + E+
Sbjct: 1517 KRIVSMHVPIATERNYFVNENPMVLPLLENNLSRQVNPESWQCEPIIEEPATPEREWKEA 1576
Query: 1250 PESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAAS 1307
ES++ +DF D +EI ++ L +E N N ++ K + S ALVAL E+AS
Sbjct: 1577 EESDM--EDFLKVDSDEILSIGLNAKESTVNVQNHLQEYKEHNEGDMSKALVALNPESAS 1634
Query: 1308 VPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
+PT KLK + LRTEH VY LPD+H LL D+R+PDDPSPYLLAIW+PGE+PNSV P+
Sbjct: 1635 IPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGETPNSVEPPE 1694
Query: 1368 YRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVF 1426
RC S+DS LCN C+SCNS+ E N+ VRGTILIPCRTA RG FPLNGTYFQVNE+F
Sbjct: 1695 RRCESQDSANLCNDSTCFSCNSIREANSQTVRGTILIPCRTATRGSFPLNGTYFQVNELF 1754
Query: 1427 ADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRR 1486
ADH +S PI++PR I NL R FG+S +++F L +QIQ FWRGFVCVRGFD++
Sbjct: 1755 ADHASSVQPIDIPREWIWNLPRRTAYFGTSVSSIFKGLSTQQIQHCFWRGFVCVRGFDQK 1814
Query: 1487 YRCPRPLVNRLHCSPSK 1503
R PRPL RLH S S+
Sbjct: 1815 ERAPRPLQARLHFSASR 1831
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 112/176 (63%), Gaps = 16/176 (9%)
Query: 484 QQLMQSTTADIIRKFKDLTIRDGGSQLP-LQCNKADGPSNVHNAVVPYQVGPSSEHGALV 542
Q+ + +II + DL + G S + ++ KA P N +VVPYQ E L
Sbjct: 735 HQIYSNLIDEIICQLNDLKL--GESNMTEMEGQKALVPYNGDRSVVPYQ-----EFELL- 786
Query: 543 PHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRI 602
K+ K +P+V LD T R W L+M G+ + ++++ EKWW +ER VF GR+
Sbjct: 787 ------KKHKPRPKVDLDAETERTWKLLMG-KGGSEGLEGTDKEKEKWWDEERNVFHGRV 839
Query: 603 QSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
SF ARMHLI GDRRF WKGSVVDSV+GV+LTQNVSD+LSSSA+MSLA+RFPL+S
Sbjct: 840 DSFIARMHLIQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLASRFPLQS 895
Score = 45.8 bits (107), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNV-VMD 60
+ HRP+V+ E PK KP Q K +KRKYVRK + + V +
Sbjct: 361 RKHRPKVIKEAKPKSTRKPATQKTQMK----------ENPHKKRKYVRKTAATPQTNVTE 410
Query: 61 ESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLENQSRDDKAIIIAIPECGVQ 120
ESV D+I+ K+CR+ALNFDLE+ ++ I E +
Sbjct: 411 ESV---------------DSIVATK----KSCRRALNFDLEHNKYASQSTISCQQE--ID 449
Query: 121 ALDECAFTKATEH 133
+E AF ++H
Sbjct: 450 HRNEKAFNTTSDH 462
>gi|356503779|ref|XP_003520681.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1764
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/557 (56%), Positives = 403/557 (72%), Gaps = 21/557 (3%)
Query: 977 DWDLLR---RIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR + E++ + MDS+DW+AVR AD SEIA+AIKERG N++A RI+ FL
Sbjct: 1182 DWDSLRIQAEAKAGKREKTENTMDSLDWDAVRRADVSEIANAIKERGMNNMLAERIQSFL 1241
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
N LV+ HG IDLEWLR+VPPD+ KE+LL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1242 NLLVDKHGGIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1301
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQ+ITFGK+F
Sbjct: 1302 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 1361
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA ASAR ALPG +K IV + N Q+P LV+N +P
Sbjct: 1362 CTKSKPNCNACPMRGECRHFASAFASARLALPGSEQKSIVITTGNNATEQNPSLVINQLP 1421
Query: 1214 VI-----------RIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIG 1262
++ + E E+ +IN +PIIEEP +P P+CS+ E++I +D F+
Sbjct: 1422 LLLPENINQAELQQTEVIRQLEAKSEINISQPIIEEPATPEPECSQVSENDI-EDTFNEE 1480
Query: 1263 DIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHL 1319
EIPT++L EF N N+M+ N + LQ+ S ALVAL AA +PT KLK + L
Sbjct: 1481 SC-EIPTIKLDIEEFTLNLQNYMQEN-MELQEGEMSKALVALHPGAACIPTPKLKNVSRL 1538
Query: 1320 RTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLC 1378
RTEH+VY LPD+H LL G+++R+PDDP YLLAIW+PGE+ +S+ P+ +C+S++ +LC
Sbjct: 1539 RTEHYVYELPDSHPLLNGWNKREPDDPGKYLLAIWTPGETADSIQPPESKCSSQECGRLC 1598
Query: 1379 NSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINV 1438
N C+SCNS E ++ IVRGT+LIPCRTA RG FPLNGTYFQVNEVFAD+++S +PI+V
Sbjct: 1599 NENECFSCNSFREASSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNDSSLNPISV 1658
Query: 1439 PRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
PR I NL R V FG+S ++F L R+IQ+ FWRG+VCVRGFDR R PRPL+ RLH
Sbjct: 1659 PRSWIWNLDRRTVYFGTSIPSIFKGLSTREIQQCFWRGYVCVRGFDREKRAPRPLLARLH 1718
Query: 1499 CSPSKKEAGSKRSRDES 1515
S+ +++ ES
Sbjct: 1719 FPVSRLPKNRDKTQQES 1735
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 11/178 (6%)
Query: 490 TTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ---- 545
T + +F+ L I ++ L P N N V E+G ++P +
Sbjct: 651 TVDTLTEQFERLNIYREAREIVLHGQNMLVPYNQQNQKNKRLV---HEYGTIIPFEGPFD 707
Query: 546 -IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQS 604
I+++R + P+V LD T R+W L+M +D + ++ED KWW+ ER VF GR +S
Sbjct: 708 PIRKQRPR--PKVDLDEETNRVWKLLM-LDINSHGINGTDEDKAKWWEDERNVFRGRAES 764
Query: 605 FTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDH 662
F ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFPL+S++++
Sbjct: 765 FIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLRSSSNY 822
>gi|449501064|ref|XP_004161268.1| PREDICTED: uncharacterized protein LOC101230418 [Cucumis sativus]
Length = 1768
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/585 (56%), Positives = 410/585 (70%), Gaps = 27/585 (4%)
Query: 950 KEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRC 1006
KE K ++K+ +K++ N WD LR+ T +R+ D MDS+DWEA+RC
Sbjct: 1191 KELKPASSRSQSKQVAKEKDNIN-----WDNLRKRTETNGKTRQRTEDTMDSLDWEAIRC 1245
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +EIA AI+ERG N++A RIK+FLNRLV+ HGSIDLEWLR+V PD+ KEYLL I GL
Sbjct: 1246 ADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRGL 1305
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
GLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YPV++ IQ Y
Sbjct: 1306 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 1365
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 1186
LWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+RGEC+HFASA ASAR LP
Sbjct: 1366 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLPA 1425
Query: 1187 PSEKGIVTS----EFGNGIGQS---PPLVVNPIPVIRIEADPV----SESGYQINNCEPI 1235
P +K IV++ E N ++ P L + P + +E P S+ C PI
Sbjct: 1426 PEDKRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVPI 1485
Query: 1236 IEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD- 1294
IEEP +P Q + + ++ ID +D D +EIPT++L EF +N N+++ N + LQ+
Sbjct: 1486 IEEPATP-EQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKN-MELQEG 1543
Query: 1295 --SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYL 1350
S AL+ALT EAAS+PT KLK + LRTEH VY LPD H LL DRR+PDDPS YL
Sbjct: 1544 DMSKALIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLKLDRREPDDPSSYL 1603
Query: 1351 LAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTAN 1409
LAIW+PGE+ NS+ P+ RC+S++ +LC E C SCNSV E N+ +VRGT+LIPCRTA
Sbjct: 1604 LAIWTPGETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAM 1663
Query: 1410 RGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQI 1469
RG FPLNGTYFQVNEVFADHE+S +PI+VPR I NL R V FG+S T+F L + I
Sbjct: 1664 RGSFPLNGTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGI 1723
Query: 1470 QEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
Q FWRGFVCVRGFD++ R PRPL+ RLH SK G ++ D+
Sbjct: 1724 QHCFWRGFVCVRGFDQKTRAPRPLMARLHFPASKLNRGRGKTEDQ 1768
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 96/135 (71%), Gaps = 7/135 (5%)
Query: 524 HNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
HNA+V Y G +VP +KR+ +P+V LD T R+W L+M + D T
Sbjct: 703 HNAIVVY-----GRDGTIVPFNPIKKRRP-RPKVELDEETGRVWKLLMGNINSKGIDGTD 756
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
E++ KWW++ER+VF+GR SF ARMHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 757 EENI-KWWEEERKVFQGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLS 815
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAARFP KS
Sbjct: 816 SSAFMSLAARFPPKS 830
>gi|357155497|ref|XP_003577140.1| PREDICTED: uncharacterized protein LOC100841571 [Brachypodium
distachyon]
Length = 1974
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/597 (55%), Positives = 405/597 (67%), Gaps = 44/597 (7%)
Query: 934 DATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEE 990
D ++ +KK+ G GK + Y DWD+LR+ + EE
Sbjct: 1407 DGSSKAKKARVGTGKKRAY------------------------DWDILRKEVLVNHGNEE 1442
Query: 991 RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRN 1050
R+++ D++DWE +R D EI+D I+ERG N++A RIK FLNRLV HGSIDLEWLR
Sbjct: 1443 RANNAKDALDWETIRQIDVKEISDTIRERGMNNMLAERIKAFLNRLVTDHGSIDLEWLRY 1502
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
V PDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVPLQPLP L
Sbjct: 1503 VDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQ 1562
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R EC
Sbjct: 1563 LHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAEC 1622
Query: 1171 KHFASAVASARFALPGPSEKGIVTSEFGNGI----GQSPPLVVNPIPVIRIEADPVSESG 1226
KHFASA ASAR ALPGP EK +VTS GN I Q P + P+ + A P
Sbjct: 1623 KHFASAFASARLALPGPEEKSLVTS--GNPIVAESCQQPYISSRPLNQLDWNAHP---HD 1677
Query: 1227 YQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFME 1286
+ + N +PIIEEP SP P+ + E +D D EEIPT++L EF +N N+M+
Sbjct: 1678 HVLGNRQPIIEEPASPEPEPETAELKEGAIEDMFFDDPEEIPTIKLNFEEFAQNLKNYMQ 1737
Query: 1287 MNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDP 1343
+N + ++D SSALVA+T EAAS+PT +LK + LRTEH VY LPD+H LL GFD+R+P
Sbjct: 1738 VNNIDIEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPDSHPLLEGFDQREP 1797
Query: 1344 DDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTIL 1402
DDP PYLL+IW+PGE+ S +P CNS +S KLC+S C+SCNS+ E A VRGT+L
Sbjct: 1798 DDPCPYLLSIWTPGETAQSADAPMTSCNSHESGKLCDSSACFSCNSIREVQAQKVRGTLL 1857
Query: 1403 IPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFN 1462
IPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR I NL R V FG+S T+F
Sbjct: 1858 IPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSVPTIFK 1917
Query: 1463 ALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK----KEAGSKRSRDES 1515
L IQ FWRGFVCVRGFDR R PRPL RLH SK K+ + +RD++
Sbjct: 1918 GLTTEDIQHCFWRGFVCVRGFDRISRAPRPLYARLHFPASKITRNKKPTASAARDDA 1974
Score = 149 bits (376), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 126/191 (65%), Gaps = 19/191 (9%)
Query: 512 LQCNKAD--GPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNL 569
L NK+D G +H+A+VPY+ E GA+VP++ K KRK+ + +V LDP T MW L
Sbjct: 833 LDINKSDDTGAVELHSALVPYK----GEVGAVVPYEGKVKRKRARAKVSLDPVTALMWKL 888
Query: 570 IMNID--DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVD 627
+M D DG+ + ++D EKW +ER++F+GR+ SF ARMHL+ GDRRF PWKGSVVD
Sbjct: 889 LMEPDMVDGS---EEMDKDKEKWLDEERKIFQGRVDSFIARMHLVQGDRRFSPWKGSVVD 945
Query: 628 SVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGA 687
SVVGV+LTQNVSD+LSSSA+M+LAA+FP KS PSD T P N +G
Sbjct: 946 SVVGVFLTQNVSDHLSSSAFMALAAKFPAKSEVSKIPSDRMFHT-----PSEKNGGCSGL 1000
Query: 688 VYDS---EGNM 695
DS +GN+
Sbjct: 1001 FGDSVKLQGNI 1011
>gi|193082832|emb|CAQ58412.1| putative transcriptional activator DEMETER [Hordeum vulgare subsp.
vulgare]
Length = 1981
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/554 (57%), Positives = 404/554 (72%), Gaps = 14/554 (2%)
Query: 959 DRTKKTTPKKNSDNTVQQDWDLLRR--IYSTG-EERSHDKMDSVDWEAVRCADESEIADA 1015
DR+K T K + DWD+LR+ + + G EERS + D++DWE +R + EI++
Sbjct: 1417 DRSK--TKKTRAGKKRTYDWDILRKEVLANRGNEERSENAKDALDWETIRQINVKEISNT 1474
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
I+ERG N++A RIK+FLNR+V HGSIDLEWLR+V PDK KEYLL I GLGLKSVECVR
Sbjct: 1475 IRERGMNNMLAERIKDFLNRVVRDHGSIDLEWLRHVDPDKAKEYLLSIRGLGLKSVECVR 1534
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
LL+L H+AFPVD NVGRI VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LD
Sbjct: 1535 LLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLD 1594
Query: 1136 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS 1195
Q+TLYELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR ALPGP EK +VTS
Sbjct: 1595 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTS 1654
Query: 1196 E--FGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESE 1253
+G Q P ++P+ + +++ + + + ++NC+PIIEEP SP P+ + E
Sbjct: 1655 GNPIASGSCQQP--YISPMRLNQLDWNAHAHD-HILDNCQPIIEEPASPEPEPETAEMRE 1711
Query: 1254 IDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPT 1310
+D + D EEIPT++L EF +N N+M++N + ++D SSALVA+T EAAS+PT
Sbjct: 1712 SAIEDIFLDDPEEIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPT 1771
Query: 1311 RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC 1370
+LK + LRTEH VY LPD+H LL G+D+R+PDDP PYLL+IW+PGE+ S+ +P+ C
Sbjct: 1772 PRLKNVSRLRTEHQVYELPDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTAC 1831
Query: 1371 NSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADH 1429
NS +S KLC+S C+SCNS+ E A VRGTIL+PCRTA RG FPLNGTYFQVNEVFADH
Sbjct: 1832 NSNESGKLCDSSACFSCNSMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADH 1891
Query: 1430 ETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRC 1489
++S +P++VPR I +L R V FG+S ++F L IQ+ FWRGFVCVRGFDR R
Sbjct: 1892 DSSRNPVDVPRRWIWDLPRRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRA 1951
Query: 1490 PRPLVNRLHCSPSK 1503
PRPL RLH SK
Sbjct: 1952 PRPLYARLHFPASK 1965
Score = 141 bits (355), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 22/184 (11%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNV--HNAVVPYQVGPSSEHGALVPHQIKEKRK 551
II+K K L I NK+DG + H A+VPY+ E GA++P++ K KRK
Sbjct: 839 IIQKIKVLDI-----------NKSDGIGSAEPHGALVPYK----GEFGAIIPYEGKGKRK 883
Query: 552 KLKPEVVLDPGTLRMWNLIMNID--DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARM 609
+ +V LDP T MW L+M D DG+ + ++D EKW +ER++F GRI SF ARM
Sbjct: 884 YARAKVNLDPVTALMWKLLMEPDMVDGS---EGMDKDKEKWLDEERKIFRGRIDSFIARM 940
Query: 610 HLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENL 669
HL+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LSSSA+M+LAA+FP K +D
Sbjct: 941 HLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLSSSAFMALAAKFPAKPEVSKISADRMF 1000
Query: 670 RTTA 673
T +
Sbjct: 1001 HTAS 1004
>gi|413925773|gb|AFW65705.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1904
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 339/650 (52%), Positives = 427/650 (65%), Gaps = 20/650 (3%)
Query: 868 LFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRT 927
L C + YT T G + S SG +D R ++S ++ + S L N+ S
Sbjct: 1259 LVCSNPQEVYTTSTD-QMGAEQSQSGCGQKYNDARVQTAS--HERHQSSTLCDNQNSCSV 1315
Query: 928 GMPQ-AHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR-IY 985
+ A D+T + +G K+++ S K + PKK +D DWD LR+ +
Sbjct: 1316 VLQGVASDSTQKFVDTQKGPSKARQNGSKAK----VRGRPKKKTD-----DWDSLRKKVL 1366
Query: 986 STG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI 1043
S G ++RSHD D+VDWEAVR A+ EI++ I+ERG N++A RIKEFLNRLV HGSI
Sbjct: 1367 SNGGDKQRSHDARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGSI 1426
Query: 1044 DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
DLEWLR+V PDK K++LL I GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVPLQ
Sbjct: 1427 DLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQ 1486
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA 1163
PLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC +
Sbjct: 1487 PLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNS 1546
Query: 1164 CPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVS 1223
CP+R ECKHFASA ASAR ALP P EK +VT E N + S +N V ++E
Sbjct: 1547 CPMRAECKHFASAFASARLALPAPEEKCLVTLEDPNVVEFSHQTYINSGSVGQLEWSANY 1606
Query: 1224 ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPN 1283
N +PIIEEP SP + E +DF + +EIPT+ L EF +N +
Sbjct: 1607 PKHAVSGNHQPIIEEPLSPECETENIEAHEGAIEDFFCEESDEIPTINLNIEEFTQNLKD 1666
Query: 1284 FMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDR 1340
+M+ N V ++ S ALVA+T +AAS+PT KLK LRTEH VY LPD+H LL GF++
Sbjct: 1667 YMQANNVEIEYADMSKALVAITPDAASIPTPKLKNVNRLRTEHQVYELPDSHPLLEGFEQ 1726
Query: 1341 RDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRG 1399
R+PDDP PYLL+IW+PGE+ S+ +P+ C+S ++ +LC S C+SCN++ E A VRG
Sbjct: 1727 REPDDPCPYLLSIWTPGETAQSIDAPKTFCDSGETGRLCGSSTCFSCNNIREMQAQKVRG 1786
Query: 1400 TILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATT 1459
T+LIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR I +L R V FG+S T
Sbjct: 1787 TLLIPCRTAMRGSFPLNGTYFQVNEVFADHCSSQNPIDVPRSWIWDLPRRTVYFGTSVPT 1846
Query: 1460 LFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSK 1509
+F L +IQ FWRGFVCVRGFDR R PRPL RLH SK G K
Sbjct: 1847 IFRGLTTEEIQRCFWRGFVCVRGFDRTVRAPRPLYARLHFPVSKVVRGKK 1896
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 20/167 (11%)
Query: 494 IIRKFKDLTIRD---GGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKR 550
II K K LTI G S++P NA+VPY+ E AL+ + K K+
Sbjct: 799 IIEKIKLLTINGPDKGVSEVP------------KNALVPYE----GEFSALIAFEGKAKK 842
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
+ + +V +DP T MWNL+M D G + ++D EKW +ER VF GR+ SF ARMH
Sbjct: 843 SRPRAKVNIDPVTTMMWNLLMGPDMGDDAEGL-DKDKEKWLDEERRVFRGRVDSFIARMH 901
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK 657
L+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+M++AA+FP+K
Sbjct: 902 LVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMAVAAKFPVK 948
>gi|224113515|ref|XP_002316517.1| DNA glycosylase [Populus trichocarpa]
gi|222865557|gb|EEF02688.1| DNA glycosylase [Populus trichocarpa]
Length = 519
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 317/515 (61%), Positives = 383/515 (74%), Gaps = 12/515 (2%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
MDS+D+EAVR A EI+DAIKERG N++A RI+EFLNRLV HGSIDLEWLR+VPPDK
Sbjct: 1 MDSLDYEAVRSARVKEISDAIKERGMNNMLAERIQEFLNRLVREHGSIDLEWLRDVPPDK 60
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
K+YLL I GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+
Sbjct: 61 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 120
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R EC+HFAS
Sbjct: 121 LYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSRPNCNACPMRAECRHFAS 180
Query: 1176 AVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPI 1235
A ASAR ALPGP EKGI TS +SP + +NP+P+ E +P G I +C PI
Sbjct: 181 AFASARLALPGPEEKGITTSTVPFMPERSPGIGINPMPLPPPEDNPHKRHGSDIGSCVPI 240
Query: 1236 IEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD- 1294
IEEP +P + +E E++I+D D +EIPT++L EF EN N+M N + LQ+
Sbjct: 241 IEEPATPDQENTELTETDIEDFG---EDPDEIPTIKLNMEEFTENLQNYMHTN-LELQEG 296
Query: 1295 --SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRG---FDRRDPDDPSPY 1349
S ALVAL AS+PT KLK + LRTEH VY LPD+H LL G DRR+PDDPSPY
Sbjct: 297 DMSKALVALNPN-ASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGNLQMDRREPDDPSPY 355
Query: 1350 LLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTA 1408
LLAIW+PGE+ NS+ P +C S++ +KLC+ + C+SCNS+ E N+ VRGT+LIPCRTA
Sbjct: 356 LLAIWTPGETANSIEPPDQQCQSREPNKLCDEKTCFSCNSIREANSQTVRGTLLIPCRTA 415
Query: 1409 NRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQ 1468
RG FPLNGTYFQVNE+FADHE+S +PI+VPR I NL R IV FG+S +++F L
Sbjct: 416 MRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYFGTSVSSIFKGLSTEG 475
Query: 1469 IQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
IQ FWRGFVCVRGFD++ R PRPL RLH S+
Sbjct: 476 IQFCFWRGFVCVRGFDQKTRAPRPLKARLHFPASR 510
>gi|333471379|gb|AEF38423.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1975
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/536 (58%), Positives = 394/536 (73%), Gaps = 12/536 (2%)
Query: 977 DWDLLRR--IYSTG-EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD+LR+ + S G EER + D++DWE +R D EI++AI+ERG N+++ RI++FL
Sbjct: 1427 DWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDFL 1486
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NR+V HGSIDLEWLR V PDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1487 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1546
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1547 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1606
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE--FGNGIGQSPPLVVNP 1211
C K PNC ACP+R ECKHFASA ASAR ALPGP EK +VTS +G Q P ++
Sbjct: 1607 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQP--YISS 1664
Query: 1212 IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
+ + +++ + + + ++N +PIIEEP SP P+ + E +D + D EEIPT++
Sbjct: 1665 MRLNQLDWN-ANAHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIK 1723
Query: 1272 LQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L EF +N N+M++N + ++D SSALVA+T EAAS+PT +LK + LRTEH VY L
Sbjct: 1724 LNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYEL 1783
Query: 1329 PDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCN 1387
PD+H LL G+D+R+PDDP PYLL+IW+PGE+ S+ +P+ CNS +S KLC+S C+SCN
Sbjct: 1784 PDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCN 1843
Query: 1388 SVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLR 1447
S+ E A VRGTIL+PCRTA RG FPLNGTYFQVNEVFADH++S +P++VPR I +L
Sbjct: 1844 SMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLP 1903
Query: 1448 REIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
R V FG+S ++F L IQ+ FWRGFVCVRGFDR R PRPL RLH SK
Sbjct: 1904 RRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPASK 1959
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 22/184 (11%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKAD--GPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRK 551
II+K K L I NK+D G + H A+VPY+ E GA++P++ K KRK
Sbjct: 833 IIQKIKILDI-----------NKSDDTGSAEPHGALVPYK----GEFGAIIPYEGKGKRK 877
Query: 552 KLKPEVVLDPGTLRMWNLIMNID--DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARM 609
+ +V LDP T MW L+M D DG+ + ++D EKW ++ER++F GRI SF ARM
Sbjct: 878 YARAKVNLDPVTALMWKLLMEPDMVDGS---EGMDKDKEKWLEEERKIFRGRIDSFIARM 934
Query: 610 HLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENL 669
HL+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LSSSA+M+LAA+FP K +D
Sbjct: 935 HLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLSSSAFMALAAKFPAKPEVSKISADRMF 994
Query: 670 RTTA 673
T +
Sbjct: 995 HTAS 998
>gi|333471383|gb|AEF38425.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1981
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/536 (58%), Positives = 394/536 (73%), Gaps = 12/536 (2%)
Query: 977 DWDLLRR--IYSTG-EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD+LR+ + S G EER + D++DWE +R D EI++AI+ERG N+++ RI++FL
Sbjct: 1433 DWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDFL 1492
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NR+V HGSIDLEWLR V PDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1493 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1552
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1553 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1612
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE--FGNGIGQSPPLVVNP 1211
C K PNC ACP+R ECKHFASA ASAR ALPGP EK +VTS +G Q P ++
Sbjct: 1613 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQP--YISS 1670
Query: 1212 IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
+ + +++ + + + ++N +PIIEEP SP P+ + E +D + D EEIPT++
Sbjct: 1671 MRLNQLDWN-ANAHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIK 1729
Query: 1272 LQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L EF +N N+M++N + ++D SSALVA+T EAAS+PT +LK + LRTEH VY L
Sbjct: 1730 LNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYEL 1789
Query: 1329 PDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCN 1387
PD+H LL G+D+R+PDDP PYLL+IW+PGE+ S+ +P+ CNS +S KLC+S C+SCN
Sbjct: 1790 PDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCN 1849
Query: 1388 SVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLR 1447
S+ E A VRGTIL+PCRTA RG FPLNGTYFQVNEVFADH++S +P++VPR I +L
Sbjct: 1850 SMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLP 1909
Query: 1448 REIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
R V FG+S ++F L IQ+ FWRGFVCVRGFDR R PRPL RLH SK
Sbjct: 1910 RRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPASK 1965
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 113/166 (68%), Gaps = 11/166 (6%)
Query: 512 LQCNKAD--GPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNL 569
L NK+D G + H A+VPY+ E GA++P++ K KRK + +V LDP T MW L
Sbjct: 846 LDINKSDDTGSAEPHGALVPYK----GEFGAIIPYEGKGKRKYARAKVNLDPVTALMWKL 901
Query: 570 IMNID--DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVD 627
+M D DG+ + ++D EKW ++ER++F GRI SF ARMHL+ GDRRF PWKGSVVD
Sbjct: 902 LMEPDMVDGS---EGMDKDKEKWLEEERKIFRGRIDSFIARMHLVQGDRRFSPWKGSVVD 958
Query: 628 SVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTA 673
SVVGV+LTQNVSD+LSSSA+M+LAA+FP K +D T +
Sbjct: 959 SVVGVFLTQNVSDHLSSSAFMALAAKFPAKPEVSKISADRMFHTAS 1004
>gi|255580114|ref|XP_002530889.1| conserved hypothetical protein [Ricinus communis]
gi|223529542|gb|EEF31495.1| conserved hypothetical protein [Ricinus communis]
Length = 1876
Score = 630 bits (1625), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/535 (57%), Positives = 382/535 (71%), Gaps = 10/535 (1%)
Query: 953 KSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADE 1009
K+++ + +K K S DWD LR+ + +ERS MDS+D+EA+R A
Sbjct: 1318 KANLNRNASKARKAKAESGQKDAVDWDSLRKQVLVNGRKKERSESAMDSLDYEAMRSAHV 1377
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
+EI+D IKERG N++A RIK+FLNRLV HGSIDLEWLR+VPPDK KEYLL I GLGLK
Sbjct: 1378 NEISDTIKERGMNNMLAERIKDFLNRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLK 1437
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
SVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWP
Sbjct: 1438 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWP 1497
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSE 1189
RLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R EC+HFASA ASAR ALPGP +
Sbjct: 1498 RLCKLDQRTLYELHYQMITFGKVFCTKSRPNCNACPMRAECRHFASAFASARLALPGPED 1557
Query: 1190 KGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSES 1249
K IVT+ +SP +V++P+P+ E + ++ G I +C PIIEEP +P + +E
Sbjct: 1558 KSIVTATVPLTTERSPGIVIDPLPLPPAEDNLLTRRGSDIVSCVPIIEEPATPEQEHTEV 1617
Query: 1250 PESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAA 1306
ES+I +D D +EIPT++L E N N+M+ N + LQ+ S ALVAL EAA
Sbjct: 1618 IESDI--EDIFDEDPDEIPTIKLNMEELTVNLQNYMQAN-MELQECDMSKALVALNPEAA 1674
Query: 1307 SVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSP 1366
S+PT KLK + LRTEH VY LPD+H LL D+R PDDPSPYLLAIW+PGE+ NS+ P
Sbjct: 1675 SIPTPKLKNVSRLRTEHQVYELPDSHPLLNRMDKRQPDDPSPYLLAIWTPGETANSIQPP 1734
Query: 1367 QYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEV 1425
+ C + KLCN + C+SCNS+ E N+ VRGT+LIPCRTA RG FPLNGTYFQVNEV
Sbjct: 1735 ERHCQFQGPDKLCNEQTCFSCNSIRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 1794
Query: 1426 FADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCV 1480
FADHE+S +PI+VPR I NL R +V FG+S +T+F L IQ FW+G V
Sbjct: 1795 FADHESSLNPIDVPRAWIWNLPRRMVYFGTSVSTIFKGLSTEGIQYCFWKGAYAV 1849
Score = 150 bits (380), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 101/140 (72%), Gaps = 8/140 (5%)
Query: 526 AVVPYQVGPSSEHGALVPHQIKE--KRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
A+VPY+ GAL+P+ E K++K +P+V LDP T R+W L+M + G + T
Sbjct: 831 AIVPYKGD-----GALIPYDGFEIIKKRKPRPKVDLDPETERVWKLLMWKEGGEGLEGTD 885
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
E ++WW++ER VF GR SF ARMHL+ GDRRF WKGSVVDSV+GV+LTQNVSD+LS
Sbjct: 886 QEK-KQWWEEERRVFGGRADSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLS 944
Query: 644 SSAYMSLAARFPLKSTNDHT 663
SSA+M+LAA+FPLKS + T
Sbjct: 945 SSAFMNLAAKFPLKSMRNRT 964
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 28/131 (21%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRK----------- 50
+ HRP+V+VEG PKK PK TPK V PN + KRKYVRK
Sbjct: 325 RKHRPKVIVEGKPKKTPK-------SVTPKTVDPNE--KAIEKRKYVRKKGQKESTTEHP 375
Query: 51 NSVSGNVVMDESVSKRRKCGRGN-----RQSNSDAIILLPPPPIKT---CRQALNFDLEN 102
+S+ E ++RK R + N+D P T CR+ALNF++EN
Sbjct: 376 DSIGETTNSTEKPKQKRKYVRKKSLKEPQIRNADYAGETTYPSAGTAASCRKALNFEMEN 435
Query: 103 QSRDDKAIIIA 113
+ + ++A
Sbjct: 436 TYSEREKNLVA 446
>gi|30680560|ref|NP_196076.2| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|332003377|gb|AED90760.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1729
Score = 630 bits (1625), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/534 (57%), Positives = 382/534 (71%), Gaps = 10/534 (1%)
Query: 978 WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ E ER+ + MDS+D+EA+R A SEI++AIKERG N++A RIK+FL
Sbjct: 1192 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1251
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+V+ HG IDLEWLR PPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 1252 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1311
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VR+GWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC
Sbjct: 1312 VRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFC 1371
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K PNC ACP+RGEC+HFASA ASAR ALP P E+ + ++ PP+ + I +
Sbjct: 1372 TKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIEL 1431
Query: 1215 -IRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ +E S + NCEPIIEEP SPG +C+E ES+I+D ++ D +EIPT++L
Sbjct: 1432 PLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYN-EDPDEIPTIKLN 1490
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
+F ME N + LQ+ S ALVAL S+PT KLK + LRTEH VY LPD
Sbjct: 1491 IEQFGMTLREHMERN-MELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPD 1549
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL G D+R+PDDPSPYLLAIW+PGE+ NS P+ +C K S K+C E C CNS+
Sbjct: 1550 SHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSL 1609
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR I +L R
Sbjct: 1610 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRR 1669
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T++F L QIQ FW+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 1670 TVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1723
Score = 137 bits (345), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 20/194 (10%)
Query: 486 LMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ 545
L Q + A+II + ++L + D + NA+V Y+ GALVP++
Sbjct: 646 LCQDSIAEIIYRMQNLYLGDKERE------------QEQNAMVLYK-----GDGALVPYE 688
Query: 546 IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSF 605
K++K +P+V +D T R+WNL+M D D+ ++ EKWW++ER VF GR SF
Sbjct: 689 --SKKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSF 746
Query: 606 TARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPS 665
ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFP K ++
Sbjct: 747 IARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKLSSSRE-D 805
Query: 666 DENLRTTASLEPIG 679
+ N+R+ +P G
Sbjct: 806 ERNVRSVVVEDPEG 819
Score = 43.5 bits (101), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 6 PRVLVEGMPKKEP-KPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNVVMDESVS 64
P+V+VEG PK++P KP + P+ KP R T K K S + + +
Sbjct: 48 PKVVVEGKPKRKPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNLKESATK 107
Query: 65 KRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLEN 102
K G + +S P +K+CR+ALNFDLEN
Sbjct: 108 KPANVGDMSNKS--------PEVTLKSCRKALNFDLEN 137
>gi|333471381|gb|AEF38424.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1982
Score = 630 bits (1625), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/536 (57%), Positives = 388/536 (72%), Gaps = 12/536 (2%)
Query: 977 DWDLLRR--IYSTGEE-RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD+LR+ + S G E R + D++DWE +R D EI++ I+ERG N+++ RI++FL
Sbjct: 1434 DWDILRKEVLASRGNEGRGENAKDALDWETIRQIDVKEISNTIRERGMNNMLSERIQDFL 1493
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NR+V HGSIDLEWLR V PDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1494 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1553
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1554 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1613
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE--FGNGIGQSPPLVVNP 1211
C K PNC ACP+R ECKHFASA ASAR ALPGP EK +VTS +G Q P +
Sbjct: 1614 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSMR 1673
Query: 1212 IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
+ + A+ + ++N +PIIEEP SP P+ + E +D + D EEIPT++
Sbjct: 1674 LNQLDWNAN---AHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIK 1730
Query: 1272 LQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L EF +N N+M++N + ++D SSALVA+T EAAS+PT +LK + LRTEH VY L
Sbjct: 1731 LNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYEL 1790
Query: 1329 PDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCN 1387
PD+H LL G+D+R+PDDP PYLL+IW+PGE+ S+ +P+ CNS +S KLC+S C+SCN
Sbjct: 1791 PDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCN 1850
Query: 1388 SVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLR 1447
S+ E A VRGTIL+PCRTA RG FPLNGTYFQVNEVFADH++S +P++VPR I +L
Sbjct: 1851 SMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLP 1910
Query: 1448 REIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
R V FG+S ++F L IQ+ FWRGFVCVRGFDR R PRPL RLH SK
Sbjct: 1911 RRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPASK 1966
Score = 141 bits (355), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 22/184 (11%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKAD--GPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRK 551
II+K K L I NK+D G + H A+VPY+ E GA++P++ K KRK
Sbjct: 840 IIQKIKVLDI-----------NKSDDTGSAEPHGALVPYK----GEFGAIIPYEGKGKRK 884
Query: 552 KLKPEVVLDPGTLRMWNLIMNID--DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARM 609
+ +V LDP T MW L+M D DG+ + ++D EKW ++ER +F GRI SF ARM
Sbjct: 885 YARAKVNLDPVTALMWKLLMEPDMVDGS---EGMDKDKEKWLEEERRIFRGRIDSFIARM 941
Query: 610 HLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENL 669
HL+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LSSSA+M+LAA+FP K +D
Sbjct: 942 HLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLSSSAFMALAAKFPAKPEVSKISADRMF 1001
Query: 670 RTTA 673
T +
Sbjct: 1002 HTAS 1005
>gi|21743571|gb|AAM77215.1| DEMETER protein [Arabidopsis thaliana]
Length = 1729
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/534 (57%), Positives = 382/534 (71%), Gaps = 10/534 (1%)
Query: 978 WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ E ER+ + MDS+D+EA+R A SEI++AIKERG N++A RIK+FL
Sbjct: 1192 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1251
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+V+ HG IDLEWLR PPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 1252 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1311
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VR+GWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC
Sbjct: 1312 VRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFC 1371
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K PNC ACP+RGEC+HFASA ASAR ALP P E+ + ++ PP+ + I +
Sbjct: 1372 TKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESFPPVAIPMIEL 1431
Query: 1215 -IRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ +E S + NCEPIIEEP SPG +C+E ES+I+D ++ D +EIPT++L
Sbjct: 1432 PLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYN-EDPDEIPTIKLN 1490
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
+F ME N + LQ+ S ALVAL S+PT KLK + LRTEH VY LPD
Sbjct: 1491 IEQFGMTLREHMERN-MELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPD 1549
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL G D+R+PDDPSPYLLAIW+PGE+ NS P+ +C K S K+C E C CNS+
Sbjct: 1550 SHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSL 1609
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR I +L R
Sbjct: 1610 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRR 1669
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T++F L QIQ FW+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 1670 TVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1723
Score = 137 bits (345), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 20/194 (10%)
Query: 486 LMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ 545
L Q + A+II + ++L + D + NA+V Y+ GALVP++
Sbjct: 646 LCQDSIAEIIYRMQNLYLGDKERE------------QEQNAMVLYK-----GDGALVPYE 688
Query: 546 IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSF 605
K++K +P+V +D T R+WNL+M D D+ ++ EKWW++ER VF GR SF
Sbjct: 689 --SKKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSF 746
Query: 606 TARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPS 665
ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFP K ++
Sbjct: 747 IARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKLSSSRE-D 805
Query: 666 DENLRTTASLEPIG 679
+ N+R+ +P G
Sbjct: 806 ERNVRSVVVEDPEG 819
Score = 43.5 bits (101), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 6 PRVLVEGMPKKEP-KPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNVVMDESVS 64
P+V+VEG PK++P KP + P+ KP R T K K S + + +
Sbjct: 48 PKVVVEGKPKRKPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNLKESATK 107
Query: 65 KRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLEN 102
K G + +S P +K+CR+ALNFDLEN
Sbjct: 108 KPANVGDMSNKS--------PEVTLKSCRKALNFDLEN 137
>gi|145334291|ref|NP_001078527.1| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|108935833|sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA
glycosylase-related protein DME
gi|84782664|gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana]
gi|332003378|gb|AED90761.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1987
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/534 (57%), Positives = 382/534 (71%), Gaps = 10/534 (1%)
Query: 978 WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ E ER+ + MDS+D+EA+R A SEI++AIKERG N++A RIK+FL
Sbjct: 1450 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1509
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+V+ HG IDLEWLR PPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 1510 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1569
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VR+GWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC
Sbjct: 1570 VRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFC 1629
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K PNC ACP+RGEC+HFASA ASAR ALP P E+ + ++ PP+ + I +
Sbjct: 1630 TKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIEL 1689
Query: 1215 -IRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ +E S + NCEPIIEEP SPG +C+E ES+I+D ++ D +EIPT++L
Sbjct: 1690 PLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYN-EDPDEIPTIKLN 1748
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
+F ME N + LQ+ S ALVAL S+PT KLK + LRTEH VY LPD
Sbjct: 1749 IEQFGMTLREHMERN-MELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPD 1807
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL G D+R+PDDPSPYLLAIW+PGE+ NS P+ +C K S K+C E C CNS+
Sbjct: 1808 SHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSL 1867
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR I +L R
Sbjct: 1868 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRR 1927
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T++F L QIQ FW+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 1928 TVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1981
Score = 137 bits (344), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 20/194 (10%)
Query: 486 LMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ 545
L Q + A+II + ++L + D + NA+V Y+ GALVP++
Sbjct: 904 LCQDSIAEIIYRMQNLYLGDKERE------------QEQNAMVLYK-----GDGALVPYE 946
Query: 546 IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSF 605
K++K +P+V +D T R+WNL+M D D+ ++ EKWW++ER VF GR SF
Sbjct: 947 --SKKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSF 1004
Query: 606 TARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPS 665
ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAARFP K ++
Sbjct: 1005 IARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKLSSSRE-D 1063
Query: 666 DENLRTTASLEPIG 679
+ N+R+ +P G
Sbjct: 1064 ERNVRSVVVEDPEG 1077
Score = 43.9 bits (102), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 6 PRVLVEGMPKKEP-KPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNVVMDESVS 64
P+V+VEG PK++P KP + P+ KP R T K K S + + +
Sbjct: 306 PKVVVEGKPKRKPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNLKESATK 365
Query: 65 KRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLEN 102
K G + +S P +K+CR+ALNFDLEN
Sbjct: 366 KPANVGDMSNKS--------PEVTLKSCRKALNFDLEN 395
>gi|255573046|ref|XP_002527453.1| conserved hypothetical protein [Ricinus communis]
gi|223533188|gb|EEF34945.1| conserved hypothetical protein [Ricinus communis]
Length = 1712
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 322/580 (55%), Positives = 394/580 (67%), Gaps = 32/580 (5%)
Query: 954 SDMKNDR-------TKKTTPKKNSDNTVQQD--WDLLRRIYSTGEERSHDKMDSVDWEAV 1004
+ MKN R T+KTT K + N V++ W+ L R YS RS DS+DWEAV
Sbjct: 1143 TSMKNKRSGLVPGETRKTT--KGTKNVVKEKSYWNDLGRKYS--RPRSSAATDSIDWEAV 1198
Query: 1005 RCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIE 1064
R A E+EIADAIK RGQ NI+A +IK+ LNR+++ HGSIDLEWLR+ P D VK YLL+IE
Sbjct: 1199 RQAPETEIADAIKSRGQHNIMARKIKKSLNRILDYHGSIDLEWLRHAPDDDVKVYLLEIE 1258
Query: 1065 GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
GLGLKSVEC+RLL+L H AFPVD NV RIAVRLGWVPL+PLPG L +HLL+EYPVMD IQ
Sbjct: 1259 GLGLKSVECLRLLTLYHDAFPVDTNVARIAVRLGWVPLEPLPGVLQLHLLEEYPVMDTIQ 1318
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFAL 1184
YLWPRLC LDQKTLYELHYQMITFGK+FC K PNCG CP+R EC+H ASA+AS L
Sbjct: 1319 KYLWPRLCKLDQKTLYELHYQMITFGKVFCTKLKPNCGVCPMRAECRHLASAIASENLCL 1378
Query: 1185 PGPSEKGIVTSEFGN------GIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEE 1238
PG ++G S+ N + + L+VNP V SES ++ +CEP+IEE
Sbjct: 1379 PGIPKRGEERSKVPNMSLESSAVDANDALIVNPTAVSLSGYVKASESKFETQSCEPLIEE 1438
Query: 1239 PRSPGPQCSESPESEIDD----DDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQ- 1293
P+SP P ++I+D + I D EEIP ++L F+ N FM+ + LQ
Sbjct: 1439 PKSP------EPVADIEDFEIANGIDINDGEEIPIIQLSNEPFRANVQYFMDEYRNNLQT 1492
Query: 1294 DSS--ALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLL 1351
DSS ALV L+ SVP RKLK + LRTEH VY +PD HELL G R D +D SPYLL
Sbjct: 1493 DSSSRALVPLSVNVDSVPVRKLKNISRLRTEHQVYEIPDDHELLIGLPRPDRNDQSPYLL 1552
Query: 1352 AIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRG 1411
AIW+PGESP S P+ RCNS+ ++LC E C+ C S+ E VRGTIL+PCRTA RG
Sbjct: 1553 AIWTPGESPASCQPPEKRCNSQGAELCKDETCFYCQSIWEERTETVRGTILVPCRTAMRG 1612
Query: 1412 RFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQE 1471
RFPLNGTYFQVNEVFADHE+S++ I VPR +I LRR IV G+S +F A +++IQE
Sbjct: 1613 RFPLNGTYFQVNEVFADHESSYNAIIVPRSSIWYLRRRIVYCGTSPNAIFKACSLKEIQE 1672
Query: 1472 YFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRS 1511
FW+GF+CVRG+D + P+PL R HC PSK S +S
Sbjct: 1673 NFWKGFICVRGWDAKTGAPKPLAKRFHCPPSKMVKNSSKS 1712
Score = 134 bits (338), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 163/264 (61%), Gaps = 22/264 (8%)
Query: 496 RKFKDLTIRDGGSQLPLQCNK------ADGPSNVH--NAVVPYQVGPSSEHG---ALVPH 544
RK K+L I D G C+ D P+ + +A+VPYQ S++ G A+V
Sbjct: 776 RKHKNLLIDDIGEGRLDVCDADAIVSYQDPPTKIEGSSAIVPYQDPSSTKIGGSSAIV-- 833
Query: 545 QIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQS 604
K K+KKL +V+LD T+R WNL++ ID+ ++ +++ EK W++E E+F GRI+S
Sbjct: 834 LHKHKKKKLTAQVLLDKETIRQWNLLVKIDN-VLGEKEEDKEREKKWEEEVEIFHGRIKS 892
Query: 605 FTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTP 664
FT+RMH+ILGDRRFKPWKGSVVDSVVGV+LTQNV+D LSS+AYMSLA+++P++S ++
Sbjct: 893 FTSRMHVILGDRRFKPWKGSVVDSVVGVFLTQNVTDFLSSAAYMSLASKYPIQSKSNQEA 952
Query: 665 SDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCE------LKDRDDAFDS 718
SD+ L S EPIG + G + N YF+TE E + L D D ++
Sbjct: 953 SDDELDYKNSQEPIGDDIVCTGTTENLHANGYFITEFEEGTSVDIVEEISLVDVKDIGNA 1012
Query: 719 RIQRKALQENGDIKVMTDAVPSQA 742
+Q+++ ++ +IK +T P A
Sbjct: 1013 ILQKQSYRQ--EIKALTHENPENA 1034
>gi|449451249|ref|XP_004143374.1| PREDICTED: protein ROS1-like [Cucumis sativus]
Length = 1782
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/598 (54%), Positives = 415/598 (69%), Gaps = 35/598 (5%)
Query: 924 SFRTGMP--QAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLL 981
S+ TG P HD + +SK + D K+D K + + V DWD L
Sbjct: 1188 SWETGEPAQNKHDHSLSSKFN------------DPKSDIIKPNRERVKKEKRVGVDWDSL 1235
Query: 982 RR-IYSTGE-ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL 1039
R+ + +TG +R+ + MDS+DWEAVRCAD +IA I+ERG N +A RIK+FL+RLV+
Sbjct: 1236 RKQVEATGRRDRTTNTMDSLDWEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKD 1295
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGW 1099
HGS DLEWLR+VPPD+ KEYLL I GLGLKSVECVRLL+LQ +AFPVD NVGRIAVRLGW
Sbjct: 1296 HGSTDLEWLRDVPPDQAKEYLLSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGW 1355
Query: 1100 VPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSP 1159
VPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K P
Sbjct: 1356 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKP 1415
Query: 1160 NCGACPLRGECKHFASAVASARFALPGPSEKGIV-TSEFGNGIGQSPPLVVNPIPVIRIE 1218
NC ACP+RGEC+HFASA ASAR +LP P EK ++ +E I Q+ + P+ + + E
Sbjct: 1416 NCNACPMRGECRHFASAFASARLSLPAPEEKSLINATERKADINQAVVVHQQPLALTQ-E 1474
Query: 1219 ADPVSESGYQI-------NNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
++P+ ES Q+ +N +PIIEEP++P P+C + SEID +D D +EIPT++
Sbjct: 1475 SEPI-ESIQQLISVKSGGSNKDPIIEEPQTPEPECPQI--SEIDIEDTLYEDPDEIPTIK 1531
Query: 1272 LQEREFKENFPNFMEMNKVMLQDSS---ALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L F ++ N+M+ N + LQ+ S ALV L+ EAAS+P KLK + LRTEH VY L
Sbjct: 1532 LNIEAFTKHVQNYMQEN-MELQEGSMSKALVLLSPEAASIPMPKLKNISRLRTEHQVYEL 1590
Query: 1329 PDAHELLRG--FDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYS 1385
PD+H LL +RR+PDDP YLLAIW+PGE+ NSV C+S++S LC + C+S
Sbjct: 1591 PDSHPLLEKLQLERREPDDPCFYLLAIWTPGETANSVEQLHAHCSSQESGGLCGEKECFS 1650
Query: 1386 CNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIAN 1445
CNSV E ++ +VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR +
Sbjct: 1651 CNSVREPDSEVVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRSWLWK 1710
Query: 1446 LRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
L R V FG+S T+F L +IQ FW+G+VCVRGFD+ R PRPL+ RLH SK
Sbjct: 1711 LSRRTVYFGTSIPTIFKGLSTEEIQGCFWKGYVCVRGFDQTTRAPRPLIARLHFPASK 1768
Score = 143 bits (361), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 151/283 (53%), Gaps = 20/283 (7%)
Query: 524 HNAVVPYQVGPSSEHGALVPHQ-----IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTT 578
H+A+V Y+ G++VP + IK++R+ K V LD T+R+W L+M D +
Sbjct: 704 HSALVVYRGD-----GSIVPFEGALDPIKKRRRFAK--VDLDEETVRVWKLLM---DNSN 753
Query: 579 KD--QTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQ 636
K+ + S+E +KWW++ER VF GR SF A+MHLI GDR F WKGSV+DSV+GV+LTQ
Sbjct: 754 KELVEGSDEAKDKWWEEERSVFSGRTDSFIAKMHLIQGDRGFSQWKGSVLDSVIGVFLTQ 813
Query: 637 NVSDNLSSSAYMSLAARFPLKSTNDHTPS-DENLRTTASLEPIGSNSTSNGAVYDSEGNM 695
NVSD+LSSSA+MSLAAR+PLKS + H S DE + + + ++ + +
Sbjct: 814 NVSDHLSSSAFMSLAARYPLKSKSLHESSVDEQTSLILNESQVTLCQAEDSVIWAKQISD 873
Query: 696 YFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQ 755
+ + CE+ ++ F + + G + ++ + + L+ +
Sbjct: 874 QSICKQSCTTVCEIDQAEENFLTSSDSSGSKSAGVTSMRGYQCSVTSYSSKKIVELEDRR 933
Query: 756 LFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFP 798
L N+ + S A++ I+ S + ++S+N L P
Sbjct: 934 LTTEINTTVEACSLGNEKTADAAIS--SQMSVVSEHSINSLCP 974
>gi|297806437|ref|XP_002871102.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
gi|297316939|gb|EFH47361.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
Length = 1997
Score = 628 bits (1619), Expect = e-176, Method: Compositional matrix adjust.
Identities = 312/537 (58%), Positives = 384/537 (71%), Gaps = 14/537 (2%)
Query: 978 WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ E ERS D MDS+D+EA+R A SEI+DAIKERG N++A RIK+FL
Sbjct: 1458 WDSLRKDVEVNEGRKERSKDSMDSIDYEAIRRASISEISDAIKERGMNNMLAVRIKDFLE 1517
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R V+ HG IDLEWLR+VPPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 1518 RTVKDHGGIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1577
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VRLGWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ TLYELHYQ+ITFGK+FC
Sbjct: 1578 VRLGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQPTLYELHYQLITFGKVFC 1637
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPS--EKGIVTSEFGNGIGQSPPLVVNPI 1212
K PNC ACP+RGEC+HFASA ASAR ALP P+ E+ + ++ PP+ + P+
Sbjct: 1638 TKSRPNCNACPMRGECRHFASAYASARLALPAPAPDERSLTSATIPVPPKSFPPVAI-PM 1696
Query: 1213 PVIRIEADPVSESGYQIN--NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTL 1270
+ + + G N NCEPIIEEP SP +C+E ES+I+D ++ D +EIPT+
Sbjct: 1697 IELPLPLEKALARGAPSNRENCEPIIEEPASPEQECTEITESDIEDAYYN-EDPDEIPTI 1755
Query: 1271 RLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYV 1327
+L +F ME N + LQ+ S ALVAL A S+PT KLK + LRTEH VY
Sbjct: 1756 KLNIEQFGMTLREHMERN-MELQEGDMSKALVALNPTATSIPTPKLKNISRLRTEHQVYQ 1814
Query: 1328 LPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSC 1386
LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ NS P+ +C K S K+C E C C
Sbjct: 1815 LPDSHPLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSEC 1874
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANL 1446
N+V E N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S +PI+VPR I +L
Sbjct: 1875 NNVREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLNPIDVPRDWIWDL 1934
Query: 1447 RREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
R V FG+S T++F L QIQ FW+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 1935 PRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1991
Score = 136 bits (342), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 21/194 (10%)
Query: 486 LMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ 545
L + A+II + ++L + D + NA+V Y+ GA+VP++
Sbjct: 909 LCLDSIAEIIYRMQNLNLGDKNRE------------QEQNALVLYR-----GDGAVVPYE 951
Query: 546 IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSF 605
K++K +P+V LD T R+WNL+M + D+ ++ EKWW++ER VF GR SF
Sbjct: 952 --SKKQKPRPKVDLDDETTRIWNLLMGKGE-KEGDEEMDKKKEKWWEEERRVFRGRADSF 1008
Query: 606 TARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPS 665
ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNV+D+LSSSA+MSLAARFP KS N
Sbjct: 1009 IARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVTDHLSSSAFMSLAARFPPKS-NSSRED 1067
Query: 666 DENLRTTASLEPIG 679
+ N+R+ +P G
Sbjct: 1068 ERNVRSVVVEDPEG 1081
Score = 40.0 bits (92), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 21/100 (21%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNVVMDE 61
K P+V+VEG KPK+ P++P T + V N + KRK +K + + E
Sbjct: 309 KKFMPKVVVEG------KPKRKPRKPATQEKV--NSKETGSGKRKKAQKTN------LKE 354
Query: 62 SVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLE 101
S +K+ G+ + S + L K+CR+ALNFDLE
Sbjct: 355 SATKK-PAHVGDMSNKSPEVTL------KSCRKALNFDLE 387
>gi|357142343|ref|XP_003572540.1| PREDICTED: uncharacterized protein LOC100823274 [Brachypodium
distachyon]
Length = 1946
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 308/534 (57%), Positives = 381/534 (71%), Gaps = 7/534 (1%)
Query: 977 DWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DW+ LR+ S ++RSH+ DSVDWEAVR AD +I++ I+ERG N++A RIKEFL
Sbjct: 1403 DWENLRKEVSCNGGNKQRSHNTKDSVDWEAVRQADVRDISETIRERGMNNVLAERIKEFL 1462
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR++ PDK K+YLL I GLGLKS ECVRLL+L H+AFPVD NV RI
Sbjct: 1463 NRLVSDHGSIDLEWLRDLQPDKAKDYLLSIRGLGLKSAECVRLLTLHHMAFPVDTNVARI 1522
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ TLYELHYQMITFGK+F
Sbjct: 1523 CVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYLWPRLCELDQLTLYELHYQMITFGKVF 1582
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR +LPGP EK +V SE N ++P P
Sbjct: 1583 CTKSKPNCNSCPMRAECKHFASAFASARLSLPGPEEKSLVASEATNAAESCHQTYIDPRP 1642
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
V ++E + N +PI+EEP SP P+ + ++ +DF + +EIPT+ L
Sbjct: 1643 VGQLEWNTNDCRHPGSGNHQPIVEEPSSPEPEPEIAETKQVSIEDFFTEEPDEIPTISLN 1702
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
+EFK+N ++M+ N + ++D S ALVA+T EAAS+PT +LK + LRTEH VY LPD
Sbjct: 1703 IKEFKQNLKSYMQANNIEIEDADMSRALVAITPEAASIPTPRLKNVSRLRTEHQVYELPD 1762
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL GFDRR DDP PYLL+IW+PGE+ S +P+ CNS+++ KLC S C+SC+S
Sbjct: 1763 SHPLLEGFDRRQTDDPCPYLLSIWTPGETAQSTDAPKTFCNSEETGKLCGSSTCFSCSSA 1822
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E A VR TILIPCRTA RG FPLNGTYFQVNE+FADH +S +PI+V R I NL R
Sbjct: 1823 REVQARKVRATILIPCRTAMRGSFPLNGTYFQVNELFADHYSSQNPIDVERSLIWNLPRR 1882
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
V FG+S T+F L +IQ+ FWRGFVCVRGFDR+ R PRPL RLH SK
Sbjct: 1883 TVYFGTSIPTIFRGLTTEEIQQCFWRGFVCVRGFDRKLRAPRPLFPRLHFPASK 1936
Score = 129 bits (323), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 101/140 (72%), Gaps = 13/140 (9%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNID--DGTTKDQTSNEDMEKWWQKERE 596
GALVP + K+K+ + +V +DP T MWNL+M D DG + ++D EKW ++ER+
Sbjct: 842 GALVPFEGNVKKKRSRAKVNMDPVTALMWNLLMAPDMCDGA---EGMDKDKEKWLEEERK 898
Query: 597 VFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
VF GRI SF ARMHL+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LSSSA+MS+A++FP+
Sbjct: 899 VFRGRIDSFIARMHLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLSSSAFMSVASKFPV 958
Query: 657 KSTN--------DHTPSDEN 668
K + HTP ++N
Sbjct: 959 KLEDPEKPAARVSHTPPEQN 978
>gi|222617989|gb|EEE54121.1| hypothetical protein OsJ_00892 [Oryza sativa Japonica Group]
Length = 1964
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/589 (53%), Positives = 391/589 (66%), Gaps = 42/589 (7%)
Query: 959 DRTKKTTPKKNSDNTVQQDWDLLRR--IYSTG-EERSHDKMDSVDWEAVRCADESEIADA 1015
D +K P+ + DWD+LR+ +YS G +ERS + DS+DWE +R A+ EI+D
Sbjct: 1384 DGSKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDT 1443
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVEC-- 1073
I+ERG N++A RIK+FLNRLV HGSIDLEWLR V DK K+YLL I GLGLKSVEC
Sbjct: 1444 IRERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECNM 1503
Query: 1074 -----------VRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
R+ S+ + VD NVGRI VRLGWVPLQPLP L +HLL+ YP+++
Sbjct: 1504 CEAWMGATSAPTRVSSVAPVG-DVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEN 1562
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARF 1182
IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR
Sbjct: 1563 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARL 1622
Query: 1183 ALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPV--------SESGYQINNCEP 1234
ALPGP EK +VTS P+ I + PV + + +NN +P
Sbjct: 1623 ALPGPEEKSLVTS--------GTPIAAETFHQTYISSRPVVSQLEWNSNTCHHGMNNRQP 1674
Query: 1235 IIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD 1294
IIEEP SP P+ E +D + D EEIPT++L EF +N ++M+ N + ++D
Sbjct: 1675 IIEEPASPEPEHETEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIED 1734
Query: 1295 ---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLL 1351
S ALVA+T E AS+PT KLK + LRTEH VY LPD+H LL GF++R+PDDP PYLL
Sbjct: 1735 ADMSKALVAITPEVASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLL 1794
Query: 1352 AIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANR 1410
+IW+PGE+ S +P+ CNS+++ +LC S C+SCNS+ E A VRGT+LIPCRTA R
Sbjct: 1795 SIWTPGETAQSTDAPKSVCNSQENGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMR 1854
Query: 1411 GRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQ 1470
G FPLNGTYFQVNEVFADH++S +PI+VPR I NL R V FG+S T+F L +IQ
Sbjct: 1855 GSFPLNGTYFQVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQ 1914
Query: 1471 EYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPS-----KKEAGSKRSRDE 1514
FWRGFVCVRGFDR R PRPL RLH S KK AGS RD+
Sbjct: 1915 HCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNKKSAGSAPGRDD 1963
Score = 137 bits (344), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 110/164 (67%), Gaps = 7/164 (4%)
Query: 512 LQCNKADGPSNV--HNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNL 569
L NK++ P H A+VPY + E G +VP + K KRK+ + +V LDP T MW L
Sbjct: 824 LDINKSEDPVTAEPHGALVPY----NGEFGPIVPFEGKVKRKRSRAKVDLDPVTALMWKL 879
Query: 570 IMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSV 629
+M D + ++D EKW +ER++F+GR+ SF ARMHL+ GDRRF PWKGSVVDSV
Sbjct: 880 LMGPDMSDCAEGM-DKDKEKWLNEERKIFQGRVDSFIARMHLVQGDRRFSPWKGSVVDSV 938
Query: 630 VGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTA 673
VGV+LTQNVSD+LSSSA+M+LAA+FP+K P++ T +
Sbjct: 939 VGVFLTQNVSDHLSSSAFMALAAKFPVKPEASEKPANVMFHTIS 982
>gi|42569673|ref|NP_181190.3| protein ROS1 [Arabidopsis thaliana]
gi|71658826|sp|Q9SJQ6.2|ROS1_ARATH RecName: Full=Protein ROS1; AltName: Full=DEMETER-like protein 1;
AltName: Full=Repressor of silencing 1
gi|30909281|gb|AAP37178.1| ROS1 [Arabidopsis thaliana]
gi|330254169|gb|AEC09263.1| protein ROS1 [Arabidopsis thaliana]
Length = 1393
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 312/538 (57%), Positives = 374/538 (69%), Gaps = 22/538 (4%)
Query: 977 DWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LRR + E++ MD+VDW+A+R AD E+A+ IK RG + +A RI+ FL
Sbjct: 858 DWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFL 917
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
+RLV HGSIDLEWLR+VPPDK KEYLL GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 918 DRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRI 977
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQKTLYELHYQMITFGK+F
Sbjct: 978 AVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVF 1037
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVN-PI 1212
C K PNC ACP++GEC+HFASA ASAR ALP ++E G G PL ++ P
Sbjct: 1038 CTKSKPNCNACPMKGECRHFASAFASARLALP--------STEKGMGTPDKNPLPLHLPE 1089
Query: 1213 PVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPT 1269
P R + V SE ++ CEPIIEEP SP P+ +E ++I++ F D EEIPT
Sbjct: 1090 PFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIEEAFFE--DPEEIPT 1147
Query: 1270 LRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVY 1326
+RL F N ME NK LQD SSALVALTAE AS+P KLK + LRTEH VY
Sbjct: 1148 IRLNMDAFTSNLKKIMEHNK-ELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVY 1206
Query: 1327 VLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC-NSKDSKLCNSEICYS 1385
LPD H LL ++R+PDDP YLLAIW+PGE+ +S+ C + LC+ E C+S
Sbjct: 1207 ELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFS 1266
Query: 1386 CNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIAN 1445
CNS+ E + IVRGTILIPCRTA RG FPLNGTYFQVNEVFADH +S +PINVPR I
Sbjct: 1267 CNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWE 1326
Query: 1446 LRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
L R V FG+S T+F L +IQ FW+G+VCVRGFDR+ R P+PL+ RLH SK
Sbjct: 1327 LPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGPKPLIARLHFPASK 1384
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 93/136 (68%), Gaps = 7/136 (5%)
Query: 526 AVVPYQVGP-----SSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKD 580
A+VPY + GA+VP K+ + +P+V LD T R+W L++ + D
Sbjct: 494 ALVPYTMNSQIVLFGGGAGAIVP-VTPVKKPRPRPKVDLDDETDRVWKLLLENINSEGVD 552
Query: 581 QTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSD 640
S+E KWW++ER VF GR SF ARMHL+ GDRRF PWKGSVVDSVVGV+LTQNVSD
Sbjct: 553 -GSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWKGSVVDSVVGVFLTQNVSD 611
Query: 641 NLSSSAYMSLAARFPL 656
+LSSSA+MSLA++FP+
Sbjct: 612 HLSSSAFMSLASQFPV 627
>gi|330370551|gb|AEC12445.1| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase
[Gossypium hirsutum]
Length = 2055
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/540 (57%), Positives = 382/540 (70%), Gaps = 20/540 (3%)
Query: 954 SDMKNDRTKKTTPKKNSDNTVQQDWDLLRR-IYSTG--EERSHDKMDSVDWEAVRCADES 1010
S +K R K K N+ DWD LR+ + + G +ERS D MDS+D+EA+R A+ +
Sbjct: 1527 SSLKPKRRKAQEGKNNAT-----DWDQLRKQVQANGLKKERSKDTMDSLDYEAMRNANVN 1581
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
EI++ IKERG N++A RIK+FLNRLV H SIDLEWLR+VPPDK K+YLL I GLGLKS
Sbjct: 1582 EISNTIKERGMNNMLAERIKDFLNRLVRDHESIDLEWLRDVPPDKAKDYLLSIRGLGLKS 1641
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
VECVRLL+L H+AFPVD NVGRIAVRLGWVPLQP P L +HLL+ YP+++ IQ YLWPR
Sbjct: 1642 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPPPESLQLHLLELYPILESIQKYLWPR 1701
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 1190
LC LDQ TLYELHYQMITFGK+FC K PNC ACP+RGEC+HFA A ASARFALPGP E+
Sbjct: 1702 LCKLDQYTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAGAFASARFALPGPEER 1761
Query: 1191 GIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVS---ESGYQINNCEPIIEEPRSPGPQCS 1247
I +S +P VN IP+ PV + G + N EPIIEEP +P P+ +
Sbjct: 1762 SITSSTAPMISETNPTRAVNQIPL----PPPVHNLLKVGPNVGNNEPIIEEPTTPEPEHA 1817
Query: 1248 ESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEA 1305
E ES D +D D +EIPT++L EF N ++M+ N + S ALVAL A
Sbjct: 1818 EGSES--DTEDACYDDPDEIPTIKLNIEEFTANLQHYMQGNMEPQEGDLSKALVALNPNA 1875
Query: 1306 ASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGS 1365
AS+PT KLK + LRTEH VY LPD H LL+ ++R+PDDPSPYLLAIW+PGE+ NS+
Sbjct: 1876 ASIPTPKLKNVSRLRTEHCVYELPDKHPLLKQMEKREPDDPSPYLLAIWTPGETANSIQP 1935
Query: 1366 PQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNE 1424
P+ C S++ +LCN + C++CNSV E N VRGTILIPCRTA RG FPLNGTYFQVNE
Sbjct: 1936 PEQSCGSQEPGRLCNEKTCFACNSVREANTETVRGTILIPCRTAMRGSFPLNGTYFQVNE 1995
Query: 1425 VFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFD 1484
VFADH++S +P++VPR I NL R V FG+S +++F L IQ FW+GFVCVRGFD
Sbjct: 1996 VFADHDSSLNPVDVPREWIWNLPRRTVYFGTSVSSIFKGLSTEGIQYCFWKGFVCVRGFD 2055
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 113/169 (66%), Gaps = 21/169 (12%)
Query: 493 DIIRKFKDLTIRDGGSQLPLQCNKADGP-SNVHNAVVPYQVGPSSEHGALVPHQIKEK-R 550
+II +FK LT+ + K + P + + NA+V Y G +VP + E +
Sbjct: 969 EIINRFKGLTLEE----------KNNKPKAELQNALVLYNGA-----GTVVPFEGFESIK 1013
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
KK++P V LDP T R+WNL+M G + T D EKWW++ER VF GR+ SF ARMH
Sbjct: 1014 KKVRPRVDLDPETNRVWNLLM----GKEGEDTEGTDKEKWWEEERRVFHGRVDSFIARMH 1069
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKST 659
L+ GDRRF WKGSVVDSV+GV+LTQNVSD+LSSSA+MSLAA+FPLKS+
Sbjct: 1070 LVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAAKFPLKSS 1118
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 44/144 (30%)
Query: 2 KNHRPRVLVEGMPKKEPKP--------------------KKAPQQPKTPKPVTPNRAHET 41
+ HRP+V+VEG PK+ PKP +K +P T + P +A ++
Sbjct: 413 RKHRPKVIVEGKPKRTPKPTTTANVNSKDNPSGKRKYVRRKGLTEPAT-QHADPTKASDS 471
Query: 42 T----RKRKYVRKNSVS-----------GNVVMDESVSKRRKCGRGNRQSNS-----DAI 81
T KRKYVRK ++ N+++ + R KC Q S D I
Sbjct: 472 TAGTPAKRKYVRKKGLTELATQHAEVLQTNLLVMLGSTIRGKCMHETNQKESASPQGDCI 531
Query: 82 ILLPPPPI---KTCRQALNFDLEN 102
P P+ ++CR+ALNFDLEN
Sbjct: 532 RDSDPSPVCAPRSCRRALNFDLEN 555
>gi|297827135|ref|XP_002881450.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
gi|297327289|gb|EFH57709.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
Length = 1432
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/540 (58%), Positives = 382/540 (70%), Gaps = 20/540 (3%)
Query: 977 DWDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LRR E E++ MD+VDWEA+R AD SE+A+ IK RG + +A RI+ FL
Sbjct: 897 DWDSLRREAQGREGIREKTARTMDTVDWEAIRAADVSEVAETIKSRGMNHKLAERIQGFL 956
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
+RLV+ HGSIDLEWLR+VPPDK KEYLL GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 957 DRLVDDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1016
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQKTLYELHYQMITFGK+F
Sbjct: 1017 AVRLGWVPLQPLPESLQLHLLEMYPILESIQKYLWPRLCKLDQKTLYELHYQMITFGKVF 1076
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA ASAR ALP +EKG+ T + ++P + P P
Sbjct: 1077 CTKSKPNCNACPMRGECRHFASAFASARLALPS-TEKGMATPD------KNPLPLHLPEP 1129
Query: 1214 VIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTL 1270
+ R + V SE ++ EPIIEEP SP P+ ++ ++I+D F D EEIPT+
Sbjct: 1130 LQREQGSEVVQHSEPAKKVTCSEPIIEEPASPEPESAQVSIADIEDAFFE--DPEEIPTI 1187
Query: 1271 RLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYV 1327
RL F N ME NK LQD SSALVALTAEAAS+P KLK + LRTEH VY
Sbjct: 1188 RLNMDAFTSNLKKLMEHNK-ELQDGNMSSALVALTAEAASLPIPKLKNISQLRTEHQVYE 1246
Query: 1328 LPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC-NSKDSKLCNSEICYSC 1386
LPD H LL ++R+PDDP YLLAIW+PGE+ +S+ +C + KLC+ E C+SC
Sbjct: 1247 LPDEHPLLVHLEKREPDDPCSYLLAIWTPGETADSIQPAVSKCIFQANGKLCDEETCFSC 1306
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANL 1446
NS+ E IVRGTILIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR I +L
Sbjct: 1307 NSIKEARTQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPIDVPREWIWDL 1366
Query: 1447 RREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEA 1506
R V FG+S T+F L IQ+ FW+G+VCVRGFDR R P+PL+ RLH SK +A
Sbjct: 1367 PRRTVYFGTSIPTIFKGLPTETIQQCFWKGYVCVRGFDRTTRGPKPLIARLHFPASKLKA 1426
Score = 117 bits (293), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 94/145 (64%), Gaps = 10/145 (6%)
Query: 522 NVHNAVVPYQVGPSSEH--------GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNI 573
N A++PY + GA+VP +KR+ +P+V LD T R+W L++
Sbjct: 491 NSETALIPYSMRSQGNQIILFGGGAGAIVPVTPVKKRRP-RPKVDLDDETDRVWKLLLEN 549
Query: 574 DDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVY 633
+ D S+E KWW++ER VF GR SF ARMHL+ GDRRF PWKGSVVDSVVGV+
Sbjct: 550 INSEGVD-GSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWKGSVVDSVVGVF 608
Query: 634 LTQNVSDNLSSSAYMSLAARFPLKS 658
LTQNVSD+LSSSA+MSLAA FP S
Sbjct: 609 LTQNVSDHLSSSAFMSLAAEFPAPS 633
>gi|297827133|ref|XP_002881449.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
gi|297327288|gb|EFH57708.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
Length = 1619
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/540 (57%), Positives = 386/540 (71%), Gaps = 20/540 (3%)
Query: 977 DWDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LRR E E++ MDSVDWEA+R AD SE+A+ IK+RG +++A RI+ FL
Sbjct: 1076 DWDSLRREAEGREGKREKTTRTMDSVDWEAIRTADVSEVAETIKKRGMNHMLAERIQGFL 1135
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR++PPDK KEYLL GLGLKSVECVRLL+L H+AFPVD NV RI
Sbjct: 1136 NRLVNEHGSIDLEWLRDIPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVARI 1195
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQKTLYELHYQMITFGK+F
Sbjct: 1196 AVRLGWVPLQPLPESLQLHLLEMYPILESIQKYLWPRLCKLDQKTLYELHYQMITFGKVF 1255
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC ACP+RGEC+HFASA SAR ALP +EKG+ T + ++P + P P
Sbjct: 1256 CTKSKPNCNACPMRGECRHFASAFVSARLALPS-TEKGMGTPD------KNPLPLHLPEP 1308
Query: 1214 VIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTL 1270
+ R + V SE ++ CEPIIEEP SP P+ ++ ++I+D F D EEIPT+
Sbjct: 1309 LYREQGSEVKQHSEPAKKVTCCEPIIEEPASPEPESAQVSIADIEDAFFE--DPEEIPTI 1366
Query: 1271 RLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYV 1327
RL F N +E N+ LQD S+ALVALTAEAA +P KLK + LRTEH VY
Sbjct: 1367 RLNTDAFTSNLKKIIEQNQ-ELQDGNMSTALVALTAEAAYLPMPKLKNISQLRTEHQVYE 1425
Query: 1328 LPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSC 1386
LPD+H LL ++R+PDDP YLLAIW+PGE+ +S+ +C S+++ ++C+ E C+SC
Sbjct: 1426 LPDSHPLLVQLEKREPDDPCSYLLAIWTPGETADSIQPTVSKCISQENGQICDEETCFSC 1485
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANL 1446
NS+ E + VRGTILIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR T+ +L
Sbjct: 1486 NSIKEARSQTVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPIDVPRETLWDL 1545
Query: 1447 RREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEA 1506
R V FG+S T+F L IQ+ FWRG+VCVRGFDR R P+PL+ RLH SK ++
Sbjct: 1546 TRRAVYFGTSIPTIFKGLSTETIQQCFWRGYVCVRGFDRETRGPKPLIARLHFPVSKMKS 1605
Score = 97.4 bits (241), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 94/176 (53%), Gaps = 41/176 (23%)
Query: 522 NVHNAVVPYQVGPSSEH--------GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNI 573
N A+VPY + GA+VP +KR+ +P+V LD T ++W L++
Sbjct: 600 NSETALVPYSMKTQGNQIVLFGGGAGAIVPVTPVKKRRP-RPKVDLDDETEKVWKLLLEN 658
Query: 574 DDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVY 633
+ D S++ KWW++ER VF GR SF ARMHL+ GDRRF PWKGSVVDSVVGV+
Sbjct: 659 INSEGID-GSDDQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWKGSVVDSVVGVF 717
Query: 634 LTQNVSDNLS-------------------------------SSAYMSLAARFPLKS 658
LTQNVSD+LS SSA+MSL + FP+ S
Sbjct: 718 LTQNVSDHLSRYKHLRNSTSKPNPTQQQVTKLTCFVFFCPCSSAFMSLVSEFPVTS 773
>gi|218196882|gb|EEC79309.1| hypothetical protein OsI_20143 [Oryza sativa Indica Group]
Length = 1873
Score = 617 bits (1591), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/568 (54%), Positives = 387/568 (68%), Gaps = 23/568 (4%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAI 1016
+ +TT KKNS+N DWD LRR +ER D+ DSVDWEAVRCAD I+ AI
Sbjct: 1313 KKSRTTSKKNSENF---DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAI 1369
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
+ERG N++A RI++FLNRLV HGSIDLEWLR+VPPD K+YLL I GLGLKSVECVRL
Sbjct: 1370 RERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRL 1429
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ
Sbjct: 1430 LTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQ 1489
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
+TLYELHYQMITFGK+FC K +PNC ACP+R EC+HFASA ASAR ALP P +K +V
Sbjct: 1490 QTLYELHYQMITFGKVFCTKSTPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS 1549
Query: 1197 ----FGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPES 1252
F NG +P N P+ ++E + NN PIIEEP SP +
Sbjct: 1550 NQFAFHNGTMPTP----NSTPLPQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLE 1604
Query: 1253 EIDDDDFSIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVP 1309
D +DF D +EIPT++L F +N N + E NK D + ALVA++ EAAS+P
Sbjct: 1605 N-DIEDFD-EDTDEIPTIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIP 1662
Query: 1310 TRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
KLK LRTEH+VY LPD+H L++ ++R+PDDPSPYLLAIW+P E ++ +P+
Sbjct: 1663 VPKLKNVHRLRTEHYVYELPDSHPLMQQLALEQREPDDPSPYLLAIWTPDELKDTREAPK 1722
Query: 1368 YRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVF 1426
CN + + LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVF
Sbjct: 1723 PCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVF 1782
Query: 1427 ADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRR 1486
ADH +SH+PIN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGF+
Sbjct: 1783 ADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNME 1842
Query: 1487 YRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
R PRPL H + SK SK++ E
Sbjct: 1843 TRAPRPLCPHFHLAASKLRRSSKKAATE 1870
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 23/185 (12%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIK---EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQ 581
NA+VPY VG GA+VP+Q + K+++ + +V LD T R+WNL+M G D
Sbjct: 836 NALVPY-VG-----GAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLM----GKAADP 885
Query: 582 TSNEDM--EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVS 639
D+ E+WW++EREVF+GR SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNV+
Sbjct: 886 VDGTDVDKERWWKQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVA 945
Query: 640 DNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVT 699
D+LSSSAYM+LAA FP T H ++ + + E I +++ + ++ +F
Sbjct: 946 DHLSSSAYMALAASFP---TGSHGNCNDGIAGQDNEEIISTSAVGDRGTFE-----FFYN 997
Query: 700 EPEPD 704
PD
Sbjct: 998 GSRPD 1002
>gi|220682961|gb|ACL80319.1| DNA glycosylase/lyase 701 [Oryza sativa Japonica Group]
Length = 1812
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/568 (54%), Positives = 385/568 (67%), Gaps = 23/568 (4%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAI 1016
+ +TT KKNS+N DWD LRR +ER D+ DSVDWEAVRCAD I+ AI
Sbjct: 1252 KKSRTTSKKNSENF---DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAI 1308
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
+ERG N++A RI++FLNRLV HGSIDLEWLR+VPPD K+YLL I GLGLKSVECVRL
Sbjct: 1309 RERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRL 1368
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ
Sbjct: 1369 LTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQ 1428
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
+TLYELHYQMITFGK+FC K PNC ACP+R EC+HFASA ASAR ALP P +K +V
Sbjct: 1429 QTLYELHYQMITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS 1488
Query: 1197 ----FGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPES 1252
F NG +P N P+ ++E + NN PIIEEP SP +
Sbjct: 1489 NQFAFHNGTMPTP----NSTPLPQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLE 1543
Query: 1253 EIDDDDFSIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVP 1309
D +DF D +EIP ++L F +N N + E NK D + ALVA++ EAAS+P
Sbjct: 1544 N-DIEDFD-EDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIP 1601
Query: 1310 TRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
KLK LRTEH+VY LPD+H L++ D+R+PDDPSPYLLAIW+P E ++ +P+
Sbjct: 1602 VPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPK 1661
Query: 1368 YRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVF 1426
CN + + LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVF
Sbjct: 1662 PCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVF 1721
Query: 1427 ADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRR 1486
ADH +SH+PIN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGF+
Sbjct: 1722 ADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNME 1781
Query: 1487 YRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
R PRPL H + SK SK++ E
Sbjct: 1782 TRAPRPLCPHFHLAASKLRRSSKKAATE 1809
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 23/185 (12%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIK---EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQ 581
NA+VPY VG GA+VP+Q + K+++ + +V LD T R+WNL+M G D
Sbjct: 775 NALVPY-VG-----GAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLM----GKAADP 824
Query: 582 TSNEDM--EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVS 639
D+ E+WW++EREVF+GR SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNV+
Sbjct: 825 VDGTDVDKERWWKQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVA 884
Query: 640 DNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVT 699
D+LSSSAYM+LAA FP T H ++ + + E I +++ + ++ +F
Sbjct: 885 DHLSSSAYMALAASFP---TGSHGNCNDGIAGQDNEEIISTSAVGDRGTFE-----FFYN 936
Query: 700 EPEPD 704
PD
Sbjct: 937 GSRPD 941
>gi|222631766|gb|EEE63898.1| hypothetical protein OsJ_18723 [Oryza sativa Japonica Group]
Length = 1857
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/568 (54%), Positives = 385/568 (67%), Gaps = 23/568 (4%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAI 1016
+ +TT KKNS+N DWD LRR +ER D+ DSVDWEAVRCAD I+ AI
Sbjct: 1297 KKSRTTSKKNSENF---DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAI 1353
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
+ERG N++A RI++FLNRLV HGSIDLEWLR+VPPD K+YLL I GLGLKSVECVRL
Sbjct: 1354 RERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRL 1413
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ
Sbjct: 1414 LTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQ 1473
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
+TLYELHYQMITFGK+FC K PNC ACP+R EC+HFASA ASAR ALP P +K +V
Sbjct: 1474 QTLYELHYQMITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS 1533
Query: 1197 ----FGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPES 1252
F NG +P N P+ ++E + NN PIIEEP SP +
Sbjct: 1534 NQFAFHNGTMPTP----NSTPLPQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLE 1588
Query: 1253 EIDDDDFSIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVP 1309
D +DF D +EIP ++L F +N N + E NK D + ALVA++ EAAS+P
Sbjct: 1589 N-DIEDFD-EDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIP 1646
Query: 1310 TRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
KLK LRTEH+VY LPD+H L++ D+R+PDDPSPYLLAIW+P E ++ +P+
Sbjct: 1647 VPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPK 1706
Query: 1368 YRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVF 1426
CN + + LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVF
Sbjct: 1707 PCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVF 1766
Query: 1427 ADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRR 1486
ADH +SH+PIN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGF+
Sbjct: 1767 ADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNME 1826
Query: 1487 YRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
R PRPL H + SK SK++ E
Sbjct: 1827 TRAPRPLCPHFHLAASKLRRSSKKAATE 1854
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 23/185 (12%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIK---EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQ 581
NA+VPY VG GA+VP+Q + K+++ + +V LD T R+WNL+M G D
Sbjct: 820 NALVPY-VG-----GAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLM----GKAADP 869
Query: 582 TSNEDM--EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVS 639
D+ E+WW++EREVF+GR SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNV+
Sbjct: 870 VDGTDVDKERWWKQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVA 929
Query: 640 DNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVT 699
D+LSSSAYM+LAA FP T H ++ + + E I +++ + ++ +F
Sbjct: 930 DHLSSSAYMALAASFP---TGSHGNCNDGIAGQDNEEIISTSAVGDRGTFE-----FFYN 981
Query: 700 EPEPD 704
PD
Sbjct: 982 GSRPD 986
>gi|297734851|emb|CBI17085.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 305/540 (56%), Positives = 373/540 (69%), Gaps = 21/540 (3%)
Query: 977 DWDLLRRIYSTG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
DWD LRR YS + R HD DS+DWEAVR A+ + +A AI RG N++A RIK+FL+
Sbjct: 375 DWDSLRRFYSNRGRKSRIHDARDSLDWEAVRDANVTHVAKAISTRGMNNVLAARIKDFLD 434
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
RLV HG +DLEWLR+VPP+K K+YLL I GLGLKSVECVRLL+L H AFPVD NVGRI
Sbjct: 435 RLVRDHGKLDLEWLRDVPPEKAKDYLLSIRGLGLKSVECVRLLTLHHHAFPVDTNVGRIT 494
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VRLGWVPLQPLP D+++H L +YP MD IQ YLWPRLC LDQKTLYELHYQMITFGK+FC
Sbjct: 495 VRLGWVPLQPLPSDVYLHSLDQYPPMDTIQKYLWPRLCTLDQKTLYELHYQMITFGKVFC 554
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K++P C ACPLRG+CKH+AS VAS + P E+GI N +G S +V N +P+
Sbjct: 555 TKKNPYCDACPLRGDCKHYASVVASRFVCISAPKEEGI-----PNYVG-SNLVVDNHVPL 608
Query: 1215 IRI---EADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
+ + E P + G NNCEPIIE P SP P+ E D +DF D +EIPT+R
Sbjct: 609 VSVSILEDGPNYQPGGTYNNCEPIIEMPTSPRPKSEEK-----DIEDFCDEDFDEIPTIR 663
Query: 1272 LQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDA 1331
L E EF N M ++ AL + A S+PTRKLK + LRTEHHVY LPD+
Sbjct: 664 LDE-EFGAGIQNCPHMYPTPQEEDHGSQALVSVATSIPTRKLKNISRLRTEHHVYELPDS 722
Query: 1332 HELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVC 1390
H LL R+ DP P+L AIWSPGE+ +S PQ RCN + S +LC E C CN+
Sbjct: 723 HHLLTEVSLRESCDPCPFLFAIWSPGETADSFEQPQRRCNLEGSGELCKDETCSFCNATR 782
Query: 1391 ERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREI 1450
E+++ I+RGT+LIPCRTA RG FPLNGTYFQVNEVFAD E+S +PI V R I NL R +
Sbjct: 783 EQDSQIIRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADDESSRNPIIVRRTEIWNLPRRM 842
Query: 1451 VCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPS---KKEAG 1507
FG+SAT++F L + +IQ FW+GF+CVRGF+R+ R P+PLV RLH SPS K +AG
Sbjct: 843 AYFGTSATSIFRGLSIMEIQNCFWQGFICVRGFNRKTRAPKPLVRRLHISPSHMGKAKAG 902
Score = 143 bits (361), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 119/196 (60%), Gaps = 29/196 (14%)
Query: 466 PTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHN 525
PT PPR S + E+ + S +I+K + L+I D +QL
Sbjct: 157 PTSTTPPRQS---SWEAEEVRVDS----LIQKLELLSISDKINQL--------------- 194
Query: 526 AVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNE 585
VPYQ + + LV +Q K K P+V LDP TL+MWNLI+ + ++ ++
Sbjct: 195 --VPYQKS-APKGNQLVRYQAK----KPAPKVDLDPETLKMWNLIVLKNRSEGVEEEMDK 247
Query: 586 DMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSS 645
EK W++EREVF GR++SF A MHL+ GDRRF PWKGSV+DSVVGV+LTQNVSD LSSS
Sbjct: 248 KDEKRWEEEREVFRGRVKSFLACMHLLQGDRRFHPWKGSVLDSVVGVFLTQNVSDKLSSS 307
Query: 646 AYMSLAARFPLKSTND 661
A+M+LAA FPL ST +
Sbjct: 308 AFMALAALFPLPSTGN 323
>gi|413945495|gb|AFW78144.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 909
Score = 600 bits (1548), Expect = e-168, Method: Compositional matrix adjust.
Identities = 303/570 (53%), Positives = 381/570 (66%), Gaps = 16/570 (2%)
Query: 938 TSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR-IYSTGE--ERSHD 994
TSK S + + + +TT KN++N DW+ LRR S G+ +RS +
Sbjct: 330 TSKSSFTSYNGVPDTAAQASKPKKTRTTTAKNTENF---DWEKLRRQACSEGQMKQRSFE 386
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
+ DS+DWEAVRCAD I+ AI+ERG N++A RI+ FLNRLV HGSIDLEWLR +PPD
Sbjct: 387 RRDSIDWEAVRCADVRRISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPD 446
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K+YLL I GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVP+QPLP L +HLL
Sbjct: 447 SAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLL 506
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC KR PNC ACP+R ECKHFA
Sbjct: 507 ELYPILETIQKYLWPRLCKLDQQTLYELHYQMITFGKVFCTKRQPNCNACPMRSECKHFA 566
Query: 1175 SAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEP 1234
SA ASAR ALP P E+ +V S +N + R+E + + N EP
Sbjct: 567 SAFASARLALPAPQEESLVKLSNPFAFQNSSMHAMNSTHLPRLEGS-IHSREFLPKNSEP 625
Query: 1235 IIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD 1294
IIEEP SP E P +++D + EIPT++L F +N N ++ + LQ
Sbjct: 626 IIEEPASPR---EERPPETMENDIEDFYEDGEIPTIKLNMEAFAQNLENCIKESNNELQS 682
Query: 1295 ---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPY 1349
+ ALVA++ EAAS+P KLK LRTEH+VY LPDAH LL+ G D+R+ DDP+PY
Sbjct: 683 DDIAKALVAISTEAASIPVPKLKNVLRLRTEHYVYELPDAHPLLQQLGLDQREHDDPTPY 742
Query: 1350 LLAIWSPGESPNSVGSPQYRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTA 1408
LLAIW+P +P+ C+ + LCN+E+C++C + E + VRGTIL+PCRTA
Sbjct: 743 LLAIWTPDGIKEITKTPKPCCDPQMGGDLCNNEMCHNCTAEKENQSRYVRGTILVPCRTA 802
Query: 1409 NRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQ 1468
RG FPLNGTYFQVNEVFADH +SH+PI+V R + NL+R +V FG+S T+F L +
Sbjct: 803 MRGSFPLNGTYFQVNEVFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIFKGLRTEE 862
Query: 1469 IQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
IQ+ FWRGFVCVRGFD R PRPL LH
Sbjct: 863 IQQCFWRGFVCVRGFDMETRAPRPLCPHLH 892
>gi|359479390|ref|XP_002270885.2| PREDICTED: DEMETER-like protein 3-like [Vitis vinifera]
Length = 1372
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 322/619 (52%), Positives = 397/619 (64%), Gaps = 58/619 (9%)
Query: 919 PSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDW 978
P ESF + Q ++ T K+ + K K++ K D + DW
Sbjct: 778 PHCMESFTSYSEQRNEMGETENKNLNNSNEGKRGKTNDKEDHSF--------------DW 823
Query: 979 DLLRRIYSTGEERS--HDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
D LRR YS +S HD DS+DWEAVR A+ + +A AI RG N++A RIK+FL+RL
Sbjct: 824 DSLRRFYSNRGRKSRIHDARDSLDWEAVRDANVTHVAKAISTRGMNNVLAARIKDFLDRL 883
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
V HG +DLEWLR+VPP+K K+YLL I GLGLKSVECVRLL+L H AFPVD NVGRI VR
Sbjct: 884 VRDHGKLDLEWLRDVPPEKAKDYLLSIRGLGLKSVECVRLLTLHHHAFPVDTNVGRITVR 943
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LGWVPLQPLP D+++H L +YP MD IQ YLWPRLC LDQKTLYELHYQMITFGK+FC K
Sbjct: 944 LGWVPLQPLPSDVYLHSLDQYPPMDTIQKYLWPRLCTLDQKTLYELHYQMITFGKVFCTK 1003
Query: 1157 RSPNCGACPLRGECKHFASAVAS------------ARFALP------GPSEKGIVTSEFG 1198
++P C ACPLRG+CKH+AS VAS A P P E+GI
Sbjct: 1004 KNPYCDACPLRGDCKHYASVVASRLPLIKNGGDGQLDLASPIENQPAAPKEEGIP----- 1058
Query: 1199 NGIGQSPPLVV-NPIPVIRI---EADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEI 1254
N +G + LVV N +P++ + E P + G NNCEPIIE P SP P+ E
Sbjct: 1059 NYVGSN--LVVDNHVPLVSVSILEDGPNYQPGGTYNNCEPIIEMPTSPRPKSEEK----- 1111
Query: 1255 DDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLK 1314
D +DF D +EIPT+RL E EF N M ++ AL + A S+PTRKLK
Sbjct: 1112 DIEDFCDEDFDEIPTIRLDE-EFGAGIQNCPHMYPTPQEEDHGSQALVSVATSIPTRKLK 1170
Query: 1315 RCAHLRTEHHVYVLPDAHELL--RGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNS 1372
+ LRTEHHVY LPD+H LL RG RR+ DP P+L AIWSPGE+ +S PQ RCN
Sbjct: 1171 NISRLRTEHHVYELPDSHHLLTERGM-RRESCDPCPFLFAIWSPGETADSFEQPQRRCNL 1229
Query: 1373 KDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHET 1431
+ S +LC E C CN+ E+++ I+RGT+LIPCRTA RG FPLNGTYFQVNEVFAD E+
Sbjct: 1230 EGSGELCKDETCSFCNATREQDSQIIRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADDES 1289
Query: 1432 SHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPR 1491
S +PI V R I NL R + FG+SAT++F L + +IQ FW+GF+CVRGF+R+ R P+
Sbjct: 1290 SRNPIIVRRTEIWNLPRRMAYFGTSATSIFRGLSIMEIQNCFWQGFICVRGFNRKTRAPK 1349
Query: 1492 PLVNRLHCSPS---KKEAG 1507
PLV RLH SPS K +AG
Sbjct: 1350 PLVRRLHISPSHMGKAKAG 1368
Score = 143 bits (360), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 99/137 (72%), Gaps = 5/137 (3%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSN 584
N +VPYQ S+ G + ++ + KK P+V LDP TL+MWNLI+ + ++ +
Sbjct: 613 NQLVPYQ--KSAPKGNQL---VRYQAKKPAPKVDLDPETLKMWNLIVLKNRSEGVEEEMD 667
Query: 585 EDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSS 644
+ EK W++EREVF GR++SF A MHL+ GDRRF PWKGSV+DSVVGV+LTQNVSD LSS
Sbjct: 668 KKDEKRWEEEREVFRGRVKSFLACMHLLQGDRRFHPWKGSVLDSVVGVFLTQNVSDKLSS 727
Query: 645 SAYMSLAARFPLKSTND 661
SA+M+LAA FPL ST +
Sbjct: 728 SAFMALAALFPLPSTGN 744
>gi|357152016|ref|XP_003575981.1| PREDICTED: uncharacterized protein LOC100830449 [Brachypodium
distachyon]
Length = 1717
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/553 (54%), Positives = 377/553 (68%), Gaps = 22/553 (3%)
Query: 963 KTTPKKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKER 1019
+TT KKN +N DWD RR Y G ERS ++ DSV+WEAVRCAD I+ AI+ER
Sbjct: 1141 RTTNKKNMENF---DWDKFRRQAYDDGHMNERSFERRDSVNWEAVRCADVQRISHAIRER 1197
Query: 1020 GQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 1079
G N++A RI+ FL RLV HGSIDLEWLR++PPD K+YLL I GLGLKSVECVRLL+L
Sbjct: 1198 GMNNVLAERIQNFLKRLVRDHGSIDLEWLRDIPPDSAKDYLLSIRGLGLKSVECVRLLTL 1257
Query: 1080 QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTL 1139
H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TL
Sbjct: 1258 HHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTL 1317
Query: 1140 YELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS--EF 1197
YELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR ALP P EK +V S +F
Sbjct: 1318 YELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKSSNQF 1377
Query: 1198 GNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDD- 1256
G P +P ++E + NN EPI+EEP SP + E PE+ ++D
Sbjct: 1378 SFENGGLPTRNSTVLP--QLEGSTFGRD-FPANNSEPIVEEPASPREE--ECPETLVNDI 1432
Query: 1257 DDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQ---DSSALVALTAEAASVPTRKL 1313
+D+ + D EIPT++L F N N ++ + LQ + ALVA++ +AAS+P KL
Sbjct: 1433 EDYDV-DTGEIPTIKLNMETFARNLENCIKESNNDLQFGDIAKALVAISTQAASIPAPKL 1491
Query: 1314 KRCAHLRTEHHVYVLPDAHELLRG--FDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCN 1371
K LRTEH+VY LPD+H L++ D+R+PDDPSPYLL IW + + + C+
Sbjct: 1492 KNVHRLRTEHYVYELPDSHSLVQQLELDQREPDDPSPYLLTIWMEDDIKEMSKASKSCCD 1551
Query: 1372 SK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHE 1430
S+ ++ CN+E C+ C E + VRGTIL+PCRTA +G FPLNGTYFQVNEVFADH+
Sbjct: 1552 SEVETGFCNNE-CHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNGTYFQVNEVFADHK 1610
Query: 1431 TSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCP 1490
+SH PI V R + NL+R +V FG+S ++F L ++Q+ FWRGFVCVRGFD R P
Sbjct: 1611 SSHDPIYVAREQLWNLQRRMVYFGTSVPSIFKGLTTEKVQQCFWRGFVCVRGFDMETRAP 1670
Query: 1491 RPLVNRLHCSPSK 1503
RPL LH + S+
Sbjct: 1671 RPLCPHLHLAASR 1683
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 8/133 (6%)
Query: 523 VHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQT 582
V N++VPY P H IK++R + K V LD T R+WNL+M T D T
Sbjct: 705 VSNSLVPYSGLPYER----PLHLIKKQRPRAK--VDLDYETTRVWNLLMG-KAAETVDGT 757
Query: 583 SNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNL 642
+ D E++WQKER+VF+GR SF ARM L+ GDR F PWKGSVVDSVVGV+LTQNVSD+L
Sbjct: 758 -DVDKERFWQKERDVFQGRANSFIARMRLVQGDRHFSPWKGSVVDSVVGVFLTQNVSDHL 816
Query: 643 SSSAYMSLAARFP 655
SSSAYM+LAA FP
Sbjct: 817 SSSAYMALAASFP 829
>gi|222631769|gb|EEE63901.1| hypothetical protein OsJ_18726 [Oryza sativa Japonica Group]
Length = 1837
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 304/564 (53%), Positives = 375/564 (66%), Gaps = 31/564 (5%)
Query: 963 KTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKER 1019
+TT KKNS+N DWD LRR +ER D+ DSVDWEAVRCAD I+ AI+ER
Sbjct: 1290 RTTSKKNSENF---DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRER 1346
Query: 1020 GQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 1079
G N++A RI++FLNRLV HGSIDLEWLR+VPPD K+YLL I GLGLKSVECVRLL+L
Sbjct: 1347 GMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTL 1406
Query: 1080 QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTL 1139
H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TL
Sbjct: 1407 HHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTL 1466
Query: 1140 YELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS---- 1195
YELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR ALP P +K +V
Sbjct: 1467 YELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPSPQDKRLVNMSNQF 1526
Query: 1196 EFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEID 1255
+F NG +P + P++++E + NN PIIEEP SP + D
Sbjct: 1527 DFQNGTMPTP----HSTPLLQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLEN-D 1580
Query: 1256 DDDFSIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVPTRK 1312
+DF D +EIPT++L F +N N + E NK D + ALVA++ EAAS+P K
Sbjct: 1581 IEDFD-EDTDEIPTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPK 1639
Query: 1313 LKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC 1370
LK LRTEH+VY LPD+H L++ D+R+PDDP+ + E+P +PQ
Sbjct: 1640 LKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPN----ELKDTREAPKPCCNPQ--- 1692
Query: 1371 NSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHE 1430
+ LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVFADH
Sbjct: 1693 --TEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHS 1750
Query: 1431 TSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCP 1490
+SH+PIN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGFD R P
Sbjct: 1751 SSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFDMETRAP 1810
Query: 1491 RPLVNRLHCSPSKKEAGSKRSRDE 1514
RPL H + SK SK + E
Sbjct: 1811 RPLCPHFHLAASKLRRSSKTAATE 1834
Score = 124 bits (311), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 98/136 (72%), Gaps = 15/136 (11%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIK---EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQ 581
NA+VPY VG GA+VP+Q + K+++ + +V LD T R+WNL+M G D
Sbjct: 809 NALVPY-VG-----GAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLM----GKAADP 858
Query: 582 TSNEDM--EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVS 639
D+ E+WW++EREVF+GR SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNV+
Sbjct: 859 VDGTDVDKERWWKQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVA 918
Query: 640 DNLSSSAYMSLAARFP 655
D+LSSSAYM+LAA FP
Sbjct: 919 DHLSSSAYMALAASFP 934
>gi|242090707|ref|XP_002441186.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
gi|241946471|gb|EES19616.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
Length = 1704
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 309/619 (49%), Positives = 386/619 (62%), Gaps = 67/619 (10%)
Query: 894 RNDLKSDFRSISSSDFNDPF---EISVLPSNRE---SFRTGMPQAHDATTTSKKSPRGKG 947
R+D +S F + + F EI+V + +E + ++G + T+ ++P+ K
Sbjct: 1122 RHDKRSSFEAPDLKEHESVFPTHEIAVEATRKEYEYTSKSGFTSCNGVPDTAAQAPKAK- 1180
Query: 948 KSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAV 1004
+T KK+++N DWD LRR YS G+ RS ++ DSVDWEAV
Sbjct: 1181 -------------KTRTATKKDAENF---DWDKLRRQAYSEGQMKTRSVERRDSVDWEAV 1224
Query: 1005 RCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIE 1064
RCAD I+ AI+ERG NI+A RI+ FLNRLV HGSIDLEWLR +PPD K+YLL I
Sbjct: 1225 RCADAQRISHAIRERGMNNILAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIR 1284
Query: 1065 GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YP+++ IQ
Sbjct: 1285 GLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQ 1344
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFAL 1184
YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R ECKHFASA ASAR AL
Sbjct: 1345 KYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLAL 1404
Query: 1185 PGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGP 1244
P P EK +V S +N + R+E + + N EPIIEEP SP
Sbjct: 1405 PAPQEKSLVKLSNQFAFQNSSMHTMNSTHLPRLEGS-LHSREFLPKNSEPIIEEPASPR- 1462
Query: 1245 QCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVAL 1301
E P I++D + EIPT++L F +N N ++ + LQ + ALVA+
Sbjct: 1463 --EEGPPETIENDIEDFYEDGEIPTIKLNMEVFAQNLENCIKESNNELQSDDIAKALVAI 1520
Query: 1302 TAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGES 1359
+ EAAS+P KLK LRTEH+VY LPDAH LL+ G D+R+PDDP+PYLLAIW+P +
Sbjct: 1521 STEAASIPVPKLKNVHRLRTEHYVYELPDAHPLLQQLGLDQREPDDPTPYLLAIWTPEK- 1579
Query: 1360 PNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTY 1419
E + VRGTIL+PCRTA RG FPLNGTY
Sbjct: 1580 -------------------------------ENQSRYVRGTILVPCRTAMRGSFPLNGTY 1608
Query: 1420 FQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVC 1479
FQVNEVFADH +SH+PI+V R + NL+R +V FG+S T+F L +IQ+ FWRGFVC
Sbjct: 1609 FQVNEVFADHRSSHNPIHVQREQLWNLQRRMVFFGTSVPTIFKGLTTEEIQQCFWRGFVC 1668
Query: 1480 VRGFDRRYRCPRPLVNRLH 1498
VRGFD R PRPL LH
Sbjct: 1669 VRGFDMETRAPRPLCPHLH 1687
Score = 128 bits (321), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 30/191 (15%)
Query: 518 DGPSNVHNAVVPYQVGPSSEHGALVPHQ-----IKEKRKKLKPEVVLDPGTLRMWNLIMN 572
+G S NA+VPY +VP++ +K++R + K V LD T R+WNL+M
Sbjct: 700 EGTSGPSNALVPYG------GAVMVPYERPLQLVKKQRPRAK--VDLDFETTRVWNLLMG 751
Query: 573 ID---DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSV 629
DGT ++ E+WWQ+EREVF+GR SF ARM L+ GDRRF PWKGSVVDSV
Sbjct: 752 KSAEPDGTDVEK------ERWWQQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSV 805
Query: 630 VGVYLTQNVSDNLSSSAYMSLAARFPLKSTN----DHTPSDENLRTTASLEPIGSNST-- 683
VGV+LTQNV+D+LSSSAYM+LAA FP +S N D +++N +TT++ +G S
Sbjct: 806 VGVFLTQNVADHLSSSAYMALAASFPSRSVNNSCKDDATTEDNEQTTSTSALVGEKSVFD 865
Query: 684 --SNGAVYDSE 692
NGA D E
Sbjct: 866 LFYNGARPDLE 876
>gi|240255311|ref|NP_187612.5| protein demeter-like 2 [Arabidopsis thaliana]
gi|378405159|sp|Q9SR66.2|DML2_ARATH RecName: Full=DEMETER-like protein 2
gi|332641327|gb|AEE74848.1| protein demeter-like 2 [Arabidopsis thaliana]
Length = 1332
Score = 581 bits (1498), Expect = e-162, Method: Compositional matrix adjust.
Identities = 323/717 (45%), Positives = 428/717 (59%), Gaps = 39/717 (5%)
Query: 814 ITQSSVTQFWP-TGNSTADVASPSKT---------------CIKESSIAASTEIPQLENT 857
+TQ ++ P TG ST + +P++ C +ESS + + I + +
Sbjct: 613 VTQETILNLDPRTGVSTPRIRNPTRVIIEEIDDDENDIDAVCSQESSKTSDSSITSADQS 672
Query: 858 -ALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEIS 916
+L D + +L ++ K G+ T NDL +SS+ + ++
Sbjct: 673 KTMLLDPFNTVLMNEQVDSQMVK----GKGHIPYTDDLNDLSQGISMVSSASTHCELNLN 728
Query: 917 VLPSNRESFRTGM-PQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQ 975
+P E P++ T ++S R + K K + KK+ S
Sbjct: 729 EVPPEVELCSHQQDPESTIQTQDQQESTRTEDVKKNRKKPTTSKPKKKSKESAKSTQKKS 788
Query: 976 QDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEF 1032
DWD LR+ +G ER+ MD+VDW+A+RC D +IA+ I +RG N++A RIK F
Sbjct: 789 VDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAERIKAF 848
Query: 1033 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
LNRLV+ HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLLSL IAFPVD NVGR
Sbjct: 849 LNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGR 908
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
IAVRLGWVPLQPLP +L +HLL+ YPV++ +Q YLWPRLC LDQKTLYELHY MITFGK+
Sbjct: 909 IAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMITFGKV 968
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPI 1212
FC K PNC ACP++ EC+H++SA ASAR ALP P E + + P+VVN
Sbjct: 969 FCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFR 1028
Query: 1213 PVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEE------ 1266
P + + + E+ + NCEPIIEEP SP P+ E + D ++G E+
Sbjct: 1029 PSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEYIEHDIEDYPRDKNNVGTSEDPWENKD 1087
Query: 1267 -IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHV 1325
IPT+ L + + + + +NK S LV L+ AA++P RKLK LRTEHHV
Sbjct: 1088 VIPTIILNK---EAGTSHDLVVNKEA-GTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHV 1143
Query: 1326 YVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCN--SKDSKLCNSEIC 1383
+ LPD H +L GF+RR+ +D PYLLAIW+PGE+ NS+ P+ RC ++ LCN C
Sbjct: 1144 FELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKC 1203
Query: 1384 YSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTI 1443
+ CN E + VRGTILIPCRTA RG FPLNGTYFQ NEVFADH++S +PI+VP I
Sbjct: 1204 FQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELI 1263
Query: 1444 ANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCS 1500
+L+R + GSS +++ L + I+ F G+VCVRGFDR R P+ LV RLHCS
Sbjct: 1264 WDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGYVCVRGFDRENRKPKSLVKRLHCS 1320
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 105/171 (61%), Gaps = 17/171 (9%)
Query: 488 QSTTADIIRK-FKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQI 546
+S T D I K F++L I G LP N A++ Y+ E A+V +
Sbjct: 443 RSLTIDAITKLFEELDINKEGLCLP---------HNRETALILYKKS-YEEQKAIVKYS- 491
Query: 547 KEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFT 606
KK KP+V LDP T R+W L+M+ D D S+E+ KWW++ER +F GR SF
Sbjct: 492 ----KKQKPKVQLDPETSRVWKLLMSSIDCDGVD-GSDEEKRKWWEEERNMFHGRANSFI 546
Query: 607 ARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK 657
ARM ++ G+R F PWKGSVVDSVVGV+LTQNV+D+ SSSAYM LAA FP++
Sbjct: 547 ARMRVVQGNRTFSPWKGSVVDSVVGVFLTQNVADHSSSSAYMDLAAEFPVE 597
>gi|242065150|ref|XP_002453864.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|241933695|gb|EES06840.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|333471385|gb|AEF38426.1| 5-methylcytosine DNA glycosylase [Sorghum bicolor]
Length = 1891
Score = 580 bits (1496), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/540 (55%), Positives = 364/540 (67%), Gaps = 30/540 (5%)
Query: 977 DWDLLRR-IYSTG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + S G ++RSHD D+VDWEAVR A+ EI++ I+ERG N++A RIKEFL
Sbjct: 1367 DWDSLRKEVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFL 1426
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR+V PDK K++LL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1427 NRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1486
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ +YELHYQMITFGK+F
Sbjct: 1487 CVRLGWVPLQPLPESLQLHLLE-----------------------MYELHYQMITFGKVF 1523
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR ALP P EK + TSE N + +N
Sbjct: 1524 CTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKRLATSEDANVVEFCHQTYINSGT 1583
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
V ++E N +PIIEEP SP P+ E +DF D +EIPT+ L
Sbjct: 1584 VGQLEWSANYPKHAVSGNHQPIIEEPLSPEPEPENVEAKEGAIEDFFCEDPDEIPTINLN 1643
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF +N N+M+ N V ++ S ALVA+T +AAS+PT KLK + LRTEH VY LPD
Sbjct: 1644 IEEFTQNLKNYMQANNVDIEYADMSKALVAITPDAASIPTPKLKNISRLRTEHQVYELPD 1703
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL GF++R+PDDP PYLL+IW+PGE+ S +P+ C+S ++ +LC S C+SCNS+
Sbjct: 1704 SHPLLDGFEQREPDDPCPYLLSIWTPGETAQSTDAPKTFCDSGETGRLCGSSTCFSCNSI 1763
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E A VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR I +L R
Sbjct: 1764 REMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHYSSQNPIDVPRSWIWDLPRR 1823
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSK 1509
V FG+S T+F L QIQ+ FWRGFVCVRGFDR R PRPL RLH SK G K
Sbjct: 1824 TVYFGTSVPTIFRGLTTEQIQQCFWRGFVCVRGFDRTVRAPRPLYARLHFPASKVVRGKK 1883
Score = 130 bits (326), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 111/165 (67%), Gaps = 14/165 (8%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKL 553
II+K K L+I +G ++ + K NA+VPY+ E GALV + K K+ +
Sbjct: 808 IIQKIKLLSI-NGPDKIVAEVPK--------NALVPYE----GEFGALVAFEGKTKKSRS 854
Query: 554 KPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLIL 613
+ +V +DP T MWNL+M D G + ++D EKW +ER VF GR+ SF ARMHL+
Sbjct: 855 RAKVNIDPVTTMMWNLLMGPDMGDGAEGL-DKDKEKWLDEERRVFRGRVDSFIARMHLVQ 913
Query: 614 GDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+M++AA+FP K+
Sbjct: 914 GDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMAVAAKFPAKT 958
>gi|242085358|ref|XP_002443104.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
gi|241943797|gb|EES16942.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
Length = 1856
Score = 578 bits (1489), Expect = e-161, Method: Compositional matrix adjust.
Identities = 299/540 (55%), Positives = 366/540 (67%), Gaps = 30/540 (5%)
Query: 977 DWDLLRR-IYSTG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + S G ++RSHD D+VDWEAVR A+ EI++ I+ERG N++A RIKEFL
Sbjct: 1331 DWDSLRKEVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFL 1390
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
+RLV HGSIDLEWLR+V PDK K++LL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1391 DRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1450
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ +YELHYQMITFGK+F
Sbjct: 1451 CVRLGWVPLQPLPESLQLHLLE-----------------------MYELHYQMITFGKVF 1487
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR ALP P EK + TSE N P+ +N
Sbjct: 1488 CTKSKPNCNSCPMRVECKHFASAFASARLALPAPEEKRLATSEDPNVAEFCHPIYINSGT 1547
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
V ++E +N +PIIEEP SP P+ E +DF D +EIPT+ L
Sbjct: 1548 VGQLEWTANYPKHAVSDNHQPIIEEPLSPEPEPENVEAKEGAIEDFFCEDPDEIPTINLN 1607
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF +N N+M+ N V ++ S ALVA+T +AAS+PT KLK + LRTEH VY LPD
Sbjct: 1608 IEEFTQNLKNYMQANNVEIEYADMSKALVAITPDAASIPTPKLKNVSRLRTEHQVYELPD 1667
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL GF++R+PDDP PYLL+IW+PGE+ S +P+ C+S ++ +LC S C+SCNS+
Sbjct: 1668 SHPLLEGFEQREPDDPCPYLLSIWTPGETAQSTDAPKTFCDSGETGRLCGSSTCFSCNSI 1727
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E A VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR I +L R
Sbjct: 1728 RETQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHYSSQNPIDVPRSWIWDLPRR 1787
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSK 1509
V FG+S T+F L +IQ+ FWRGFVCVRGFDR R PRPL RLH SK G K
Sbjct: 1788 TVYFGTSVPTIFRGLTTEEIQQCFWRGFVCVRGFDRTVRAPRPLYARLHFPASKVVRGRK 1847
Score = 130 bits (328), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 111/183 (60%), Gaps = 24/183 (13%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNV-----HNAVVPYQVGPSSEHGALVPHQIKE 548
II+K K L+I +GP V NA+VPYQ E GALV + K
Sbjct: 771 IIQKIKLLSI--------------NGPDKVVAEVPKNALVPYQ----GEFGALVAFKGKT 812
Query: 549 KRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTAR 608
K+ + + +V +DP T MWNL+M D G + ++D EKW +ER VF GR+ SF AR
Sbjct: 813 KKSRSRAKVNIDPVTTMMWNLLMGPDMGDGAEGL-DKDKEKWLDEERRVFRGRVDSFIAR 871
Query: 609 MHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDEN 668
MHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+M +AA+FP K+ P E
Sbjct: 872 MHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMGVAAKFPAKTEVPEKPVAEM 931
Query: 669 LRT 671
T
Sbjct: 932 CHT 934
>gi|226499668|ref|NP_001146555.1| uncharacterized protein LOC100280151 [Zea mays]
gi|219887797|gb|ACL54273.1| unknown [Zea mays]
Length = 501
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/491 (58%), Positives = 348/491 (70%), Gaps = 4/491 (0%)
Query: 1023 NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
N++A RIKEFLNRLV HGSIDLEWLR+V PDK K++LL I GLGLKSVECVRLL+L H+
Sbjct: 3 NMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHM 62
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
AFPVD NVGRI VRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYEL
Sbjct: 63 AFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTLYEL 122
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIG 1202
HYQMITFGK+FC K PNC +CP+R ECKHFASA ASAR ALP P EK +VT E N +
Sbjct: 123 HYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKCLVTLEDPNVVE 182
Query: 1203 QSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIG 1262
S +N V ++E N +PIIEEP SP + E +DF
Sbjct: 183 FSHQTYINSGSVGQLEWSANYPKHAVSGNHQPIIEEPLSPECETENIEAHEGAIEDFFCE 242
Query: 1263 DIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHL 1319
+ +EIPT+ L EF +N ++M+ N V ++ S ALVA+T +AAS+PT KLK L
Sbjct: 243 ESDEIPTINLNIEEFTQNLKDYMQANNVEIEYADMSKALVAITPDAASIPTPKLKNVNRL 302
Query: 1320 RTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLC 1378
RTEH VY LPD+H LL GF++R+PDDP PYLL+IW+PGE+ S+ +P+ C+S ++ +LC
Sbjct: 303 RTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSIDAPKTFCDSGETGRLC 362
Query: 1379 NSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINV 1438
S IC+SCN++ E A VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+V
Sbjct: 363 GSSICFSCNNIREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHCSSQNPIDV 422
Query: 1439 PRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
PR I +L R V FG+S T+F L +IQ FWRGFVCVRGFDR R PRPL RLH
Sbjct: 423 PRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQRCFWRGFVCVRGFDRTVRAPRPLYARLH 482
Query: 1499 CSPSKKEAGSK 1509
SK G K
Sbjct: 483 FPVSKVVRGKK 493
>gi|413936924|gb|AFW71475.1| hypothetical protein ZEAMMB73_049283 [Zea mays]
Length = 1906
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 297/540 (55%), Positives = 363/540 (67%), Gaps = 30/540 (5%)
Query: 977 DWDLLRR-IYSTG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ ++S G ++R++D D+VDWEAVR A+ EI++ I+ERG N++A RIKEFL
Sbjct: 1382 DWDSLRKEVFSNGGDKQRNNDARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFL 1441
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HG IDLEWLR+VPPDK K++LL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1442 NRLVTDHGGIDLEWLRDVPPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1501
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ +YELHYQMITFGK+F
Sbjct: 1502 CVRLGWVPLQPLPESLQLHLLE-----------------------MYELHYQMITFGKVF 1538
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CPLR ECKHFASA ASAR ALP P EK + TSE N + +N
Sbjct: 1539 CTKSKPNCNSCPLRAECKHFASAFASARLALPAPEEKRLATSEDPNVVEFCHQTYINSGA 1598
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
V +E N +P IEEP SP P+ + +DF D +EIPT+ L
Sbjct: 1599 VGELEWSANYPKHAVCGNLQPFIEEPLSPEPEPENVEAKDGAIEDFFNEDPDEIPTINLN 1658
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF +N N+M+ N V ++ S ALVA+T EAAS+PT KLK + LRTEH VY LPD
Sbjct: 1659 IEEFTQNLKNYMQANHVEIEYADMSKALVAITPEAASIPTPKLKNVSRLRTEHQVYELPD 1718
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 1389
+H LL GF++R+PDDP PYLL+IW+PGE+ S +P+ C+S ++ +LC S C+SCNS+
Sbjct: 1719 SHPLLEGFEQREPDDPCPYLLSIWTPGETAQSTNAPKTFCDSGETGQLCGSLTCFSCNSL 1778
Query: 1390 CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1449
E A VRGT+LIPCRTA RG FPLNGTYFQVNEVFADH +S +PI+VPR I +L R
Sbjct: 1779 REMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHCSSQNPIDVPRSWIWDLPRR 1838
Query: 1450 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSK 1509
V FG+S T+F L +IQ+ FWRGFVCVRGFDR R PRPL RLH SK G K
Sbjct: 1839 TVYFGTSVPTIFRGLTTEEIQQCFWRGFVCVRGFDRTVRAPRPLYARLHFPASKVVRGKK 1898
Score = 127 bits (319), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 97/133 (72%), Gaps = 5/133 (3%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSN 584
+A+VPY+ E GALV + K K+ + + +V +DP T MWNL+M D G + +
Sbjct: 842 DALVPYE----GEFGALVAFEGKTKKNRSRAKVNIDPVTTMMWNLLMGPDMGDGAEGL-D 896
Query: 585 EDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSS 644
+D EKW +ER+VF GR+ SF ARMHL+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSS
Sbjct: 897 KDKEKWLDEERKVFRGRVDSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSS 956
Query: 645 SAYMSLAARFPLK 657
SA+M++AA+FP K
Sbjct: 957 SAFMAVAAKFPAK 969
>gi|449527101|ref|XP_004170551.1| PREDICTED: LOW QUALITY PROTEIN: protein ROS1-like, partial [Cucumis
sativus]
Length = 987
Score = 574 bits (1480), Expect = e-160, Method: Compositional matrix adjust.
Identities = 306/577 (53%), Positives = 392/577 (67%), Gaps = 42/577 (7%)
Query: 924 SFRTGMP--QAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLL 981
S+ TG P HD + +SK + D K+D K + + V DWD L
Sbjct: 428 SWETGEPAQNKHDHSLSSKFN------------DPKSDIIKPNRERVKKEKRVGVDWDSL 475
Query: 982 RR-IYSTGE-ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL 1039
R+ + +TG +R+ + MDS+DWEAVRCAD +IA I+ERG N +A RIK+FL+RLV+
Sbjct: 476 RKQVEATGRRDRTTNTMDSLDWEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKD 535
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGW 1099
HGS DLEWLR+VPPD+ KEYLL I GLGLKSVECVRLL+LQ +AFPVD NVGRIAVRLGW
Sbjct: 536 HGSTDLEWLRDVPPDQAKEYLLSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGW 595
Query: 1100 VPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSP 1159
VPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K P
Sbjct: 596 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKP 655
Query: 1160 NCGACPLRGECKHFASAVASARFALPGPSEKGIV-TSEFGNGIGQSPPLVVNPIPVIRIE 1218
NC ACP+RGEC+HFASA ASAR +LP P EK ++ +E I Q+ + P+ + + E
Sbjct: 656 NCNACPMRGECRHFASAFASARLSLPAPEEKSLINATERKADINQAVVVHQQPLALTQ-E 714
Query: 1219 ADPVSESGYQI-------NNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
++P+ ES Q+ +N +PIIEEP++P P+C + SEID +D D +EIPT++
Sbjct: 715 SEPI-ESIQQLISVKSGGSNKDPIIEEPQTPEPECPQI--SEIDIEDTLYEDPDEIPTIK 771
Query: 1272 LQEREFKENFPNFMEMNKVMLQDSS---ALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L F ++ N+M+ N + LQ+ S ALV L+ EAAS+P KLK + LRTEH VY L
Sbjct: 772 LNIEAFTKHVQNYMQEN-MELQEGSMSKALVLLSPEAASIPMPKLKNISRLRTEHQVYEL 830
Query: 1329 PDAHELLRG--FDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYS 1385
PD+H LL +RR+PDDP YLLAIW+PGE+ NSV C+S++S LC + C+S
Sbjct: 831 PDSHPLLEKLQLERREPDDPCFYLLAIWTPGETANSVEQLHAHCSSQESGGLCGEKECFS 890
Query: 1386 CNSVCERNAGIVRGTI-------LIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINV 1438
CNSV E ++ +VRGT IPCRTA RG FPLNGTYFQVNEVFADH++S +PI+V
Sbjct: 891 CNSVREPDSEVVRGTTSANQLQXXIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDV 950
Query: 1439 PRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWR 1475
PR + L R V FG+S T+F L +IQ FW+
Sbjct: 951 PRSWLWKLSRRTVYFGTSIPTIFKGLSTEEIQGCFWK 987
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 3/185 (1%)
Query: 615 DRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPS-DENLRTTA 673
DR F WKGSV+DSV+GV+LTQNVSD+LSSSA+MSLAAR+PLKS + H S DE
Sbjct: 28 DRGFSQWKGSVLDSVIGVFLTQNVSDHLSSSAFMSLAARYPLKSKSLHESSVDEQTSLIL 87
Query: 674 SLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKV 733
+ + + ++ + + + + CE+ ++ F + + G +
Sbjct: 88 NESQVTLCQAEDSVIWAKQISDQSICKQSCTTVCEIDQAEENFLTSSDSSGSKTAGVTSM 147
Query: 734 MTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSV 793
++ + + L+ +L N+ + S A++ I+ S + ++S+
Sbjct: 148 RGYQCSVTSYSSKKIVELEDRRLTTEINTTVEACSLGNEKTADAAIS--SQMSVVSEHSI 205
Query: 794 NQLFP 798
N L P
Sbjct: 206 NSLCP 210
>gi|339699499|gb|AEJ87849.1| hypothetical protein [Fragaria x ananassa]
Length = 496
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 287/498 (57%), Positives = 358/498 (71%), Gaps = 10/498 (2%)
Query: 990 ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLR 1049
E++ + MDSVDWEAVR A+ ++IA IKERG N++A RIKEFLNRL+ HGS+DLEWLR
Sbjct: 2 EKTRNTMDSVDWEAVRTANVNDIAQTIKERGMNNMLAERIKEFLNRLLREHGSVDLEWLR 61
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
+VPPD+ KEYLL GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L
Sbjct: 62 DVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 121
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHY+MITFGK+FC K PNC ACP+RGE
Sbjct: 122 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYRMITFGKVFCTKSKPNCNACPMRGE 181
Query: 1170 CKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQI 1229
C+HFASA ASAR ALPGP +K IV+S ++P +V N + + E P+ + G
Sbjct: 182 CRHFASAFASARLALPGPGQKSIVSSTSSPVAEKNPAVVGNIMSLPPPENYPLQKVGAY- 240
Query: 1230 NNCEPIIEEPRSPGPQCSESPESEIDD---DDFSIGDIEEIPTLRLQEREFKENFPNFME 1286
EPIIEEP SP + + SEI+D ++ D ++I + + + + + M+
Sbjct: 241 -RSEPIIEEPVSPEQEFTNLSHSEIEDLLNEEEYDDDPDDITHINISMEQLTDTLQDHMQ 299
Query: 1287 MNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDP 1343
N + L+D S ALVAL A S+PT KLK + LRTEH VY LPD+H LL G DR +P
Sbjct: 300 -NNMDLKDGDLSKALVALNPAATSLPTPKLKDVSRLRTEHQVYELPDSHPLLEGVDRLEP 358
Query: 1344 DDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTIL 1402
DDPSPYLLAIW+PGE+ NS P+ C SK+ + LC+ + C++CNS+ E + IVRGTIL
Sbjct: 359 DDPSPYLLAIWTPGETANSFQPPESSCGSKEGNTLCSEKTCFTCNSIREEKSQIVRGTIL 418
Query: 1403 IPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFN 1462
IPCRTA RG FPLNGTYFQVNE+FADH +S +PI+VPR I NL R V FG+S T++F
Sbjct: 419 IPCRTAMRGSFPLNGTYFQVNEMFADHASSANPIDVPRGWIWNLPRRPVYFGTSVTSIFR 478
Query: 1463 ALDMRQIQEYFWRGFVCV 1480
L IQ FW+G+VCV
Sbjct: 479 GLTTEGIQYCFWKGYVCV 496
>gi|357129088|ref|XP_003566199.1| PREDICTED: uncharacterized protein LOC100844361 [Brachypodium
distachyon]
Length = 1546
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/494 (54%), Positives = 336/494 (68%), Gaps = 30/494 (6%)
Query: 1030 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
K FLNRLV HGSIDLEWLR++PPD K+YLL I GLGLKSVECVRLL+L H+AFPVD N
Sbjct: 1041 KSFLNRLVRDHGSIDLEWLRDIPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 1100
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
VGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ Y+WPRLC LDQ+TLYELHYQMITF
Sbjct: 1101 VGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYIWPRLCKLDQQTLYELHYQMITF 1160
Query: 1150 GKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS--EFG--------- 1198
GK+FC K PNC ACP+R ECKHFASA ASAR ALP P EK +V S +F
Sbjct: 1161 GKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKSSNQFSFENSGLPTR 1220
Query: 1199 NGIGQSPPLVVNPIPVIRIEADPVSESGYQI--NNCEPIIEEPRSP-GPQCSESPESEID 1255
N S L V P ++E S G + EPI+EEP SP +C E+ E++I+
Sbjct: 1221 NHAWNSTVLSVLP----QLEG---STYGRDVLATYSEPIVEEPASPREEECPETLENDIE 1273
Query: 1256 DDDFSIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVPTRK 1312
D D D EIPT++L F +N N + E NK + D + ALVA++ EAAS+P K
Sbjct: 1274 DYD---ADNGEIPTIKLNMEAFAQNLENCIKESNKDLQSDDIAKALVAISTEAASIPVPK 1330
Query: 1313 LKRCAHLRTEHHVYVLPDAHELLRGFD--RRDPDDPSPYLLAIWSPGESPNSVGSPQYRC 1370
LK LRTEH+VY LPD+H L++ + RR+PDDPSPYLL IW + +P+ C
Sbjct: 1331 LKNVRRLRTEHYVYELPDSHSLVQQLELARREPDDPSPYLLTIWMEDDIKEMSKAPKSCC 1390
Query: 1371 NSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADH 1429
+S+ ++ CN+ C+ C E + VRGTIL+PCRTA +G FPLNGTYFQVNEVFADH
Sbjct: 1391 DSQMEADFCNNGKCHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNGTYFQVNEVFADH 1450
Query: 1430 ETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRC 1489
++SH PI+V R + +L+R +V FG+S +T+F L ++Q+ FWRGFVCVRGFD +
Sbjct: 1451 KSSHDPIHVAREQLWSLQRRMVYFGTSVSTIFKGLTTEEVQQCFWRGFVCVRGFDMETKA 1510
Query: 1490 PRPLVNRLHCSPSK 1503
PRPL LH + SK
Sbjct: 1511 PRPLCPHLHLAASK 1524
Score = 110 bits (275), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 109/176 (61%), Gaps = 24/176 (13%)
Query: 523 VHNAVVPYQVGPSSEHGALV------PHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDG 576
+ N++VPY G ++ H +K++R + K V LD T R+WNL+M
Sbjct: 701 LSNSLVPYS-------GQMIFPYERPLHLVKKQRPRAK--VNLDYETTRVWNLLMG--KA 749
Query: 577 TTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLIL----GDRRFKPWKGSVVDSVVGV 632
T ++ D E+WWQ+EREVF+GR SF ARM L+ GDR F PWKGSVVDSVVGV
Sbjct: 750 TEPVDGTDVDKERWWQQEREVFQGRANSFIARMRLVQVYRNGDRHFSPWKGSVVDSVVGV 809
Query: 633 YLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAV 688
+LTQNVSD+LSSSA+M+LAA FP S H+ ++++ + A+ E I S S G +
Sbjct: 810 FLTQNVSDHLSSSAFMALAASFPPGSV--HSNCEDDITSQAN-EEIFSMSAVGGDI 862
>gi|297833776|ref|XP_002884770.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
gi|297330610|gb|EFH61029.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1078
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 306/662 (46%), Positives = 391/662 (59%), Gaps = 73/662 (11%)
Query: 856 NTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSS------DF 909
NT L+ ++VD + + G G+ T N + +SS+ +
Sbjct: 461 NTVLMNEQVDS-----QMVKG--------KGHMPYTDDLNGMSEGISMVSSTSTHCELNL 507
Query: 910 ND-PFEISVLPSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKK 968
N+ P E+ + RE T PQ D ++ K + K S +K KK+T
Sbjct: 508 NEVPPEVELCSHQRELESTIQPQ--DQQENTRTEDVKKNRKKPTTSKLK----KKSTEPA 561
Query: 969 NSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNII 1025
S+ DWD LR+ +G ER+ MD+VDW+A+RC D ++IA+ I +RG N++
Sbjct: 562 KSNKKKSFDWDSLRKQAESGGRKRERTERTMDTVDWDALRCTDVNKIANIIIKRGMNNML 621
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
A RIK FLNRLV HGSIDLEWLR++ PD+ KEYLL I GLGLKSVECVRLLSL IAFP
Sbjct: 622 AERIKAFLNRLVRKHGSIDLEWLRDIHPDQAKEYLLSINGLGLKSVECVRLLSLHQIAFP 681
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VD NVGRIAVRLGWVPLQPLP +L +HLL+ YPV++ +Q YLWPRLC LDQKTLYELHY
Sbjct: 682 VDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYH 741
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSP 1205
MITFGK+FC K PNC ACP++ EC+H+ASA ASAR ALP P E T +
Sbjct: 742 MITFGKVFCTKVKPNCNACPMKAECRHYASARASARLALPEPEESDRTTVMVHERRYKRK 801
Query: 1206 PLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIE 1265
P VVN P + + + E+ + NCEPIIEEP SP P+ E E ++ ++G +
Sbjct: 802 PFVVNFRPSLFLFQEKEHEAQ-RSQNCEPIIEEPASPEPEYIERDIEEYPWNNNNVGTSK 860
Query: 1266 E-------IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAH 1318
+ IPT+ L KE + + +NK S LV L+ AA++P RKLK
Sbjct: 861 DPWENKDVIPTIMLN----KEAGTSHLVVNKEA-GTSQDLVVLSTYAAAIPRRKLKIKEK 915
Query: 1319 LRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLC 1378
LRTEH+VY LP H +L GF+R + DD PYLLAI +PGE
Sbjct: 916 LRTEHNVYELPKYHSILEGFERHEDDDLVPYLLAICTPGEE------------------- 956
Query: 1379 NSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINV 1438
E + VRGTILIPCRTA RG FPLNGTYFQ NEVFADH +S +PI V
Sbjct: 957 ------------EESHNTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHGSSINPIEV 1004
Query: 1439 PRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
P +I +LRR I FGSS +++ L +++I++ F G+VCVRGFDR R P+ LV RLH
Sbjct: 1005 PTQSIWDLRRRIAYFGSSVSSICKGLSVKEIEDNFQEGYVCVRGFDRENRKPKSLVKRLH 1064
Query: 1499 CS 1500
CS
Sbjct: 1065 CS 1066
Score = 94.0 bits (232), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 113/197 (57%), Gaps = 26/197 (13%)
Query: 488 QSTTADIIRK-FKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQI 546
+S T D I K F++L I S LP N A++ Y+ +E A+V +
Sbjct: 223 RSLTIDAITKLFEELDINKESSCLP---------HNRETALILYKKA-YAEQQAIVKYS- 271
Query: 547 KEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFT 606
KK KP+V LDP T R+W L+M D D S+E+ KWW++ER +F GR SF
Sbjct: 272 ----KKQKPKVQLDPETSRVWKLLMLSIDSDGVD-GSDEEKRKWWEEERNMFHGRANSFI 326
Query: 607 ARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSD 666
ARM ++ G+R F PWKGSVVDSVVGV+LTQNV+D+ SSSAYM LAA FP+ D
Sbjct: 327 ARMRVVQGNRTFSPWKGSVVDSVVGVFLTQNVADHSSSSAYMDLAAEFPV---------D 377
Query: 667 ENLRTTASLEPIGSNST 683
N + LE GS+ T
Sbjct: 378 WNFNKGSCLEEWGSSVT 394
>gi|255575365|ref|XP_002528585.1| Protein ROS1, putative [Ricinus communis]
gi|223531981|gb|EEF33793.1| Protein ROS1, putative [Ricinus communis]
Length = 1634
Score = 518 bits (1333), Expect = e-143, Method: Compositional matrix adjust.
Identities = 274/559 (49%), Positives = 345/559 (61%), Gaps = 88/559 (15%)
Query: 977 DWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + + G ER+ + MDS+DWEAVRCA+ ++IA+ IKERG N++A RIK FL
Sbjct: 1103 DWDALRKQVEANGRKRERTPNTMDSLDWEAVRCAEVNDIANTIKERGMNNVLAERIKNFL 1162
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1163 NRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1222
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+F
Sbjct: 1223 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1282
Query: 1154 CKKRSPNCGACPLRGECKHFASAVA----------------------------------- 1178
C K PNC ACP+RGEC+HFASA A
Sbjct: 1283 CTKSKPNCNACPMRGECRHFASAFARSKNLNVIKETSYNWSFRLSTMNSMCKQSTGLFPV 1342
Query: 1179 --------SARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADP--------- 1221
SAR ALPGP EKG+V++ +P +V +P+ +A
Sbjct: 1343 SKDHHVKCSARLALPGPEEKGMVSATENRTNEPNPAAMVGQLPLPLPQATEQSEENQLSK 1402
Query: 1222 ---VSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFK 1278
SE+ Y +N+CEPI+EEP SP P+ + E++++D D +EIPT++L EF
Sbjct: 1403 SIQQSEAQYGVNSCEPIVEEPSSPEPERIQVTENDMEDT--FCEDPDEIPTIKLNIEEFT 1460
Query: 1279 ENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGF 1338
+N N+M+ N + LQ+ ALT + ++ H +Y L +
Sbjct: 1461 QNLQNYMQ-NNMELQECDMSKALTGSS-------------IQYGHPLYTLTLFQSHI--- 1503
Query: 1339 DRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCN-SKDSKLCNSEICYSCNSVCERNAGIV 1397
PS + A E+ NS+ P+ CN +D KLC+ + C+SCNS+ E N+ IV
Sbjct: 1504 ------SPSYWTCAC----ETANSIQPPENNCNLQEDGKLCDEKTCFSCNSIREANSQIV 1553
Query: 1398 RGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSA 1457
RGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR I NL R V FG+S
Sbjct: 1554 RGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRSWIWNLPRRTVYFGTSI 1613
Query: 1458 TTLFNALDMRQIQEYFWRG 1476
T+F L IQ FWRG
Sbjct: 1614 PTIFKGLTTEGIQHCFWRG 1632
Score = 126 bits (316), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 102/151 (67%), Gaps = 24/151 (15%)
Query: 524 HNAVVPYQVGPSSEH--------GALVPHQ---IKEKRKKLKPEVVLDPGTLRMWNLIM- 571
NA+VPY G ++ G +VP+ IK++R + P+V LD T ++W L+M
Sbjct: 739 QNALVPYSAGNEQQNALVLYRSNGTVVPYTDSLIKKRRSR--PQVDLDEETNKVWRLLMA 796
Query: 572 NID----DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVD 627
NI+ +GTT ED KWW++ER VF GR SF ARMHL+ GDRRF WKGSVVD
Sbjct: 797 NINSEGINGTT------EDKAKWWEEERNVFRGRANSFIARMHLVQGDRRFSQWKGSVVD 850
Query: 628 SVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
SVVGV+LTQNVSD+LSSSA+MSLAA FPLKS
Sbjct: 851 SVVGVFLTQNVSDHLSSSAFMSLAAHFPLKS 881
Score = 46.2 bits (108), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTR---KRKYVRKNSVSGNVV 58
K HRP+V+ EG +P+P+K P TP A T R KRKYVRK +S
Sbjct: 216 KKHRPKVITEG----KPRPRK---------PATPKHALNTERPTGKRKYVRKKPLSKAPT 262
Query: 59 MDESVSKRRKCG-RGNRQSNSDAIILLPP--------------PPIKTCRQALNFDLENQ 103
+ +VS G R + I PP P K+CR++LNF E Q
Sbjct: 263 TNLAVSTEIPAGKRKYVRRKPLNKISTPPVEATGKSVSTISVEPAKKSCRRSLNFYTEGQ 322
Query: 104 SRDDKA 109
RD+ +
Sbjct: 323 PRDNNS 328
>gi|79496905|ref|NP_195132.3| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|84028203|sp|O49498.2|DML3_ARATH RecName: Full=DEMETER-like protein 3
gi|332660916|gb|AEE86316.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 1044
Score = 511 bits (1316), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/538 (49%), Positives = 342/538 (63%), Gaps = 14/538 (2%)
Query: 977 DWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
DW+ LRR+Y+ R MDSV+W VR + ++ + IK+RGQ I++ RI +FLN
Sbjct: 501 DWNNLRRMYTKEGSRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDE 560
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
V +G+IDLEWLRN P VK YLL+IEG+GLKS ECVRLL L+H AFPVD NVGRIAVR
Sbjct: 561 VNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVR 620
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LG VPL+PLP + +H L EYP MD IQ YLWPRLC L Q+TLYELHYQMITFGK+FC K
Sbjct: 621 LGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTK 680
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP++ ECK+FASA S++ L P EK + F N Q + V+ I
Sbjct: 681 TIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMNAHSQD--VAVDMTSNIN 738
Query: 1217 IEADPVSESGYQINNC-EPIIEEPRSPGPQCSESPESEIDDDDFS--IGDIEEIPTLRLQ 1273
+ + VS C +P++E P SP + ES ++I+D F +P +
Sbjct: 739 LVEECVSSGCSDQAICYKPLVEFPSSPRAEIPES--TDIEDVPFMNLYQSYASVPKIDFD 796
Query: 1274 EREFKENFPNFMEMNKVMLQD----SSALVALTAEAASVPT---RKLKRCAHLRTEHHVY 1326
K++ + + ++ M S ALV T E A +P RK+K LRTEH VY
Sbjct: 797 LDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVY 856
Query: 1327 VLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSC 1386
VLPD HELL F+RR DDPSPYLLAIW PGE+ +S P+ +C+S SKLC + C C
Sbjct: 857 VLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSSDGSKLCKIKNCSYC 916
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANL 1446
++ E+N+ I RGTILIPCRTA RG FPLNGTYFQ NEVFADHETS +PI R L
Sbjct: 917 WTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGL 976
Query: 1447 RREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKK 1504
+ + GS+ T++F LD R+I+ FW GF+C+R FDR+ R P+ LV RLH P ++
Sbjct: 977 EKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPKELVRRLHTPPDER 1034
Score = 94.4 bits (233), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 542 VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGR 601
V IK +K + +V LDP T++ W+++M ++D ++ E KW +KERE+F+ R
Sbjct: 334 VTTMIKADKKLVTAKVNLDPETIKEWDVLM-VNDSPSRSYDDKETEAKW-KKEREIFQTR 391
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
I F RMH + G+R+FK WKGSVVDSVVGV+LTQN +D LSS+A+MS+AA+FP+
Sbjct: 392 IDLFINRMHRLQGNRKFKQWKGSVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFPV 446
>gi|52354425|gb|AAU44533.1| hypothetical protein AT4G34060 [Arabidopsis thaliana]
Length = 1044
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/538 (49%), Positives = 342/538 (63%), Gaps = 14/538 (2%)
Query: 977 DWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
DW+ LRR+Y+ R MDSV+W VR + ++ + IK+RGQ I++ RI +FLN
Sbjct: 501 DWNNLRRMYTKEGSRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDE 560
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
V +G+IDLEWLRN P VK YLL+IEG+GLKS ECVRLL L+H AFPVD NVGRIAVR
Sbjct: 561 VNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVR 620
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LG VPL+PLP + +H L EYP MD IQ YLWPRLC L Q+TLYELHYQMITFGK+FC K
Sbjct: 621 LGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTK 680
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP++ ECK+FASA S++ L P EK + F N Q + V+ I
Sbjct: 681 TIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMNAHSQD--VAVDMTSNIN 738
Query: 1217 IEADPVSESGYQINNC-EPIIEEPRSPGPQCSESPESEIDDDDFS--IGDIEEIPTLRLQ 1273
+ + VS C +P++E P SP + ES ++I+D F +P +
Sbjct: 739 LVEECVSSGCSDQAICYKPLVEFPSSPRAEIPES--TDIEDVPFMNLYQSYASVPKIDFD 796
Query: 1274 EREFKENFPNFMEMNKVMLQD----SSALVALTAEAASVPT---RKLKRCAHLRTEHHVY 1326
K++ + + ++ M S ALV T E A +P RK+K LRTEH VY
Sbjct: 797 LDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVY 856
Query: 1327 VLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSC 1386
VLPD HELL F+RR DDPSPYLLAIW PGE+ +S P+ +C+S SKLC + C C
Sbjct: 857 VLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSSDGSKLCKIKNCSYC 916
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANL 1446
++ E+N+ I RGTILIPCRTA RG FPLNGTYFQ NEVFADHETS +PI R L
Sbjct: 917 WTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGL 976
Query: 1447 RREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKK 1504
+ + GS+ T++F LD R+I+ FW GF+C+R FDR+ R P+ LV RLH P ++
Sbjct: 977 EKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPKELVRRLHTPPDER 1034
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 542 VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGR 601
V IK +K + +V LDP T++ W+++M ++D ++ +++ E +KERE+F+ R
Sbjct: 334 VTTMIKADKKLVTAKVNLDPETIKEWDVLM-VNDSPSRSY-DDKETEAKXKKEREIFQTR 391
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
I F RMH + G+R+FK WKGSVVDSVVGV+LTQN +D LSS+A+MS+AA+FP+
Sbjct: 392 IDLFINRMHRLQGNRKFKQWKGSVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFPV 446
>gi|115464171|ref|NP_001055685.1| Os05g0445900 [Oryza sativa Japonica Group]
gi|113579236|dbj|BAF17599.1| Os05g0445900, partial [Oryza sativa Japonica Group]
Length = 473
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/477 (54%), Positives = 322/477 (67%), Gaps = 17/477 (3%)
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPG 1107
LR+VPPD K+YLL I GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVP+QPLP
Sbjct: 1 LRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPE 60
Query: 1108 DLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K PNC ACP+R
Sbjct: 61 SLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMR 120
Query: 1168 GECKHFASAVASARFALPGPSEKGIVTSE----FGNGIGQSPPLVVNPIPVIRIEADPVS 1223
EC+HFASA ASAR ALP P +K +V F NG +P N P+ ++E +
Sbjct: 121 SECRHFASAFASARLALPSPQDKRLVNLSNQFAFHNGTMPTP----NSTPLPQLEGS-IH 175
Query: 1224 ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPN 1283
NN PIIEEP SP + D +DF D +EIP ++L F +N N
Sbjct: 176 ARDVHANNTNPIIEEPASPREEECRELLEN-DIEDFD-EDTDEIPIIKLNMEAFSQNLEN 233
Query: 1284 FM-EMNKVMLQD--SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLR--GF 1338
+ E NK D + ALVA++ EAAS+P KLK LRTEH+VY LPD+H L++
Sbjct: 234 CIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLAL 293
Query: 1339 DRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK-DSKLCNSEICYSCNSVCERNAGIV 1397
D+R+PDDPSPYLLAIW+P E ++ +P+ CN + + LC++E+C++C S E V
Sbjct: 294 DQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLCSNEMCHNCVSERENQYRYV 353
Query: 1398 RGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSA 1457
RGT+L+PCRTA RG FPLNGTYFQVNEVFADH +SH+PIN+PR + NL R +V FG+S
Sbjct: 354 RGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSV 413
Query: 1458 TTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDE 1514
T+F L +IQ FWRGFVCVRGF+ R PRPL H + SK SK++ E
Sbjct: 414 PTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCPHFHLAASKLRRSSKKAATE 470
>gi|6143875|gb|AAF04422.1|AC010927_15 hypothetical protein [Arabidopsis thaliana]
Length = 1309
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 393/698 (56%), Gaps = 63/698 (9%)
Query: 814 ITQSSVTQFWP-TGNSTADVASPSKT---------------CIKESSIAASTEIPQLENT 857
+TQ ++ P TG ST + +P++ C +ESS + + I + +
Sbjct: 613 VTQETILNLDPRTGVSTPRIRNPTRVIIEEIDDDENDIDAVCSQESSKTSDSSITSADQS 672
Query: 858 -ALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEIS 916
+L D + +L ++ K G+ T NDL +SS+ + ++
Sbjct: 673 KTMLLDPFNTVLMNEQVDSQMVK----GKGHIPYTDDLNDLSQGISMVSSASTHCELNLN 728
Query: 917 VLPSNRESFRTGM-PQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQ 975
+P E P++ T ++S R + K K + KK+ S
Sbjct: 729 EVPPEVELCSHQQDPESTIQTQDQQESTRTEDVKKNRKKPTTSKPKKKSKESAKSTQKKS 788
Query: 976 QDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEF 1032
DWD LR+ +G ER+ MD+VDW+A+RC D +IA+ I +RG N++A RIK F
Sbjct: 789 VDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAERIKAF 848
Query: 1033 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
LNRLV+ HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLLSL IAFPVD NVGR
Sbjct: 849 LNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGR 908
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
IAVRLGWVPLQPLP +L +HLL+ LYELHY MITFGK+
Sbjct: 909 IAVRLGWVPLQPLPDELQMHLLE-----------------------LYELHYHMITFGKV 945
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPI 1212
FC K PNC ACP++ EC+H++SA ASAR ALP P E + + P+VVN
Sbjct: 946 FCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFR 1005
Query: 1213 PVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEE------ 1266
P + + + E+ + NCEPIIEEP SP P+ E + D ++G E+
Sbjct: 1006 PSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEYIEHDIEDYPRDKNNVGTSEDPWENKD 1064
Query: 1267 -IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHV 1325
IPT+ L + + + + +NK S LV L+ AA++P RKLK LRTEHHV
Sbjct: 1065 VIPTIILNK---EAGTSHDLVVNKEA-GTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHV 1120
Query: 1326 YVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCN--SKDSKLCNSEIC 1383
+ LPD H +L GF+RR+ +D PYLLAIW+PGE+ NS+ P+ RC ++ LCN C
Sbjct: 1121 FELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKC 1180
Query: 1384 YSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTI 1443
+ CN E + VRGTILIPCRTA RG FPLNGTYFQ NEVFADH++S +PI+VP I
Sbjct: 1181 FQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELI 1240
Query: 1444 ANLRREIVCFGSSATTLFNALDMRQIQEYFWRG-FVCV 1480
+L+R + GSS +++ L + I+ F G +C+
Sbjct: 1241 WDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGMLICL 1278
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 105/171 (61%), Gaps = 17/171 (9%)
Query: 488 QSTTADIIRK-FKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQI 546
+S T D I K F++L I G LP N A++ Y+ E A+V +
Sbjct: 443 RSLTIDAITKLFEELDINKEGLCLP---------HNRETALILYKKS-YEEQKAIVKYS- 491
Query: 547 KEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFT 606
KK KP+V LDP T R+W L+M+ D D S+E+ KWW++ER +F GR SF
Sbjct: 492 ----KKQKPKVQLDPETSRVWKLLMSSIDCDGVD-GSDEEKRKWWEEERNMFHGRANSFI 546
Query: 607 ARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK 657
ARM ++ G+R F PWKGSVVDSVVGV+LTQNV+D+ SSSAYM LAA FP++
Sbjct: 547 ARMRVVQGNRTFSPWKGSVVDSVVGVFLTQNVADHSSSSAYMDLAAEFPVE 597
>gi|125552526|gb|EAY98235.1| hypothetical protein OsI_20146 [Oryza sativa Indica Group]
Length = 1802
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/559 (48%), Positives = 342/559 (61%), Gaps = 56/559 (10%)
Query: 963 KTTPKKNSDNTVQQDWDLLRRIYSTG---EERSHDKMDSVDWEAVRCADESEIADAIKER 1019
+TT KKNS+N DWD LRR +ER D+ DSVDWEAVRCAD I+ AI+ER
Sbjct: 1290 RTTSKKNSENF---DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRER 1346
Query: 1020 GQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 1079
G N++A RI++FLNRLV HGSIDLEWLR+VPPD K+YLL I GLGLKSVECVRLL+L
Sbjct: 1347 GMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTL 1406
Query: 1080 QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTL 1139
H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YPV++ IQ YLWPRLC LDQ+TL
Sbjct: 1407 HHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTL 1466
Query: 1140 YELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGN 1199
YELHYQMITFGK CK C F+S + E+ +F N
Sbjct: 1467 YELHYQMITFGK--CKT-------------CTSFSSGQKVGEY------EQSF---DFQN 1502
Query: 1200 GIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDF 1259
G +P + P++++E + NN PIIEEP SP + D +DF
Sbjct: 1503 GTMPTP----HSTPLLQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLEN-DIEDF 1556
Query: 1260 SIGDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVPTRKLKRC 1316
D +EIPT++L F +N N + E NK D + ALVA++ EAAS+P KLK
Sbjct: 1557 D-EDTDEIPTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNV 1615
Query: 1317 AHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK-DS 1375
LRTEH+V+ R SP+ + E ++ +P+ CN + +
Sbjct: 1616 HRLRTEHYVFC----------SQLRTSRFTSPH-----ATDELKDTREAPKPCCNPQTEG 1660
Query: 1376 KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHP 1435
LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVFADH +SH+P
Sbjct: 1661 GLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNP 1720
Query: 1436 INVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVN 1495
IN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGFD R PRPL
Sbjct: 1721 INIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFDMETRAPRPLCP 1780
Query: 1496 RLHCSPSKKEAGSKRSRDE 1514
H + SK SK + E
Sbjct: 1781 HFHLAASKLRRSSKTAATE 1799
Score = 124 bits (311), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 98/136 (72%), Gaps = 15/136 (11%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIK---EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQ 581
NA+VPY VG GA+VP+Q + K+++ + +V LD T R+WNL+M G D
Sbjct: 809 NALVPY-VG-----GAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLM----GKAADP 858
Query: 582 TSNEDM--EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVS 639
D+ E+WW++EREVF+GR SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNV+
Sbjct: 859 VDGTDVDKERWWKQEREVFQGRANSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVA 918
Query: 640 DNLSSSAYMSLAARFP 655
D+LSSSAYM+LAA FP
Sbjct: 919 DHLSSSAYMALAASFP 934
>gi|224100667|ref|XP_002311968.1| predicted protein [Populus trichocarpa]
gi|222851788|gb|EEE89335.1| predicted protein [Populus trichocarpa]
Length = 411
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/406 (57%), Positives = 296/406 (72%), Gaps = 9/406 (2%)
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K
Sbjct: 1 LGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 60
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP+R EC+HFASA SAR ALPGP K I TS +SP +V+NP+P++
Sbjct: 61 SRPNCNACPMRAECRHFASAFTSARLALPGPETKDITTSTVPFMPEKSPSIVINPMPLLP 120
Query: 1217 IEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQERE 1276
E + G+ I +CEPIIEEP +P + +E E++I+D D +EIPT++L E
Sbjct: 121 PEDNQHKSVGFDIGSCEPIIEEPVTPDQEQTELAETDIEDFG---EDPDEIPTIKLNMEE 177
Query: 1277 FKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHE 1333
F EN N++ N + LQ+ S ALVAL AS+PT KLK + LRTEH VY LPD+H
Sbjct: 178 FTENLQNYIHSN-MELQEYDMSKALVALDPN-ASIPTPKLKNVSRLRTEHQVYELPDSHP 235
Query: 1334 LLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD-SKLCNSEICYSCNSVCER 1392
LL+G D+R+PDDPSPYLLAIW+PGE+ NS+ P+ +C S++ +KLCN +IC+SCNS+ E
Sbjct: 236 LLQGMDKREPDDPSPYLLAIWTPGETANSIEPPEQQCQSREPNKLCNEKICFSCNSIREA 295
Query: 1393 NAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVC 1452
N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S +PI+VPR I NL R IV
Sbjct: 296 NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVY 355
Query: 1453 FGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
FG+S ++F L +Q FW+GFVCVRGFD++ R PRPL RLH
Sbjct: 356 FGTSVPSIFKGLSTEGVQHCFWKGFVCVRGFDQKTRAPRPLKARLH 401
>gi|138996990|dbj|BAF52857.1| repressor of silencing 2b [Nicotiana tabacum]
Length = 1673
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/464 (53%), Positives = 308/464 (66%), Gaps = 50/464 (10%)
Query: 953 KSDMKND---RTKKTTPKKNSDNTVQQDWDLLR---RIYSTGEERSHDKMDSVDWEAVRC 1006
K D ND + KK K +N DWD LR + E++ + +DS+DWEAVRC
Sbjct: 1222 KVDSVNDNPSKAKKGQLGKEKENI---DWDSLRLEAQANGKKREKTANTLDSLDWEAVRC 1278
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A+ +EIA I+ERG N +A RIK FLNR+V HGSIDLEWLR+VPPDK KEYLL I GL
Sbjct: 1279 ANVNEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGL 1338
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
GLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YP+++ IQ Y
Sbjct: 1339 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKY 1398
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 1186
LWPRLC LDQ+TLYELHY MITFGK+FC K PNC ACPLRGEC+HFASA ASAR ALP
Sbjct: 1399 LWPRLCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPA 1458
Query: 1187 PSEKGIVTSEFGNGIGQSP-------PL--------------VVNPIPVIRIEADPVSES 1225
P EK IV++ +P PL ++N P+I + A P
Sbjct: 1459 PEEKSIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKLINSAPIIEVPATP---- 1514
Query: 1226 GYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNF- 1284
EPI+E P +P + ++PE +I+D F D EIPT+ L EF +N +
Sbjct: 1515 -------EPIVELPATPEQEQIQAPEIDIEDTYFE--DPCEIPTIELNMAEFTQNLKKYV 1565
Query: 1285 ---MEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRR 1341
ME+++V + S+ALVALT+EAAS+P KLK + LRTEH VY LPD+H LL G D+R
Sbjct: 1566 KNNMELHQVEI--SNALVALTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKR 1623
Query: 1342 DPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICY 1384
+PDDP YLLAIW+PGE+ NS P+ +CNS++S KLC +E +
Sbjct: 1624 EPDDPCSYLLAIWTPGETANSFQPPETQCNSQESGKLCENETMF 1667
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKEKRK-KLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
+A+V YQ G++VP RK K +P+V +D T R+W L++ + D T
Sbjct: 807 SALVLYQ-----RDGSIVPFGSSLVRKRKPRPKVDVDDETDRVWKLLLQDINSEGVDGT- 860
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
+ED KWW++ER VF R SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 861 DEDKAKWWEEERRVFNSRADSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLS 920
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAA FPLK+
Sbjct: 921 SSAFMSLAAHFPLKT 935
Score = 48.5 bits (114), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 43/139 (30%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSG------ 55
+ HRP+V+VEG PK+ PK + Q P T KRKYVR+N V
Sbjct: 289 RKHRPKVVVEGKPKRTPKRRTEKQ---------PGSVETKTEKRKYVRRNKVGSPAPTSA 339
Query: 56 ---NVVMDESVS---------KRRKCGR-------------GNRQSNSDAIILLPPPPIK 90
N +DE + KR+ R GN + + LP K
Sbjct: 340 EEVNNTIDEGKTPSSKETPPAKRKYVRRNQVKKSTEKPSEEGNGGTTEPKKVSLPR---K 396
Query: 91 TCRQALNFDLENQSRDDKA 109
+CR+ LNF+ E Q+ D+ +
Sbjct: 397 SCRRTLNFEFERQASDENS 415
>gi|138996988|dbj|BAF52856.1| repressor of silencing 2a [Nicotiana tabacum]
Length = 1673
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/461 (53%), Positives = 304/461 (65%), Gaps = 44/461 (9%)
Query: 953 KSDMKNDRTKKTTPKKNSDNTVQQDWDLLR---RIYSTGEERSHDKMDSVDWEAVRCADE 1009
K D ND K + DWD LR + E++ + +DS+DWEAVRCA+
Sbjct: 1222 KVDSVNDNPSKAKKGQLGKEKENIDWDSLRLEAQANGKKREKTANTLDSLDWEAVRCANV 1281
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
+EIA I+ERG N +A RIK FLNR+V HGSIDLEWLR+VPPDK KEYLL I GLGLK
Sbjct: 1282 NEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLK 1341
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
SVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWP
Sbjct: 1342 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWP 1401
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSE 1189
RLC LDQ+TLYELHY MITFGK+FC K PNC ACPLRGEC+HFASA ASAR ALP P E
Sbjct: 1402 RLCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPAPEE 1461
Query: 1190 KGIVTSEFGNGIGQSP-------PL--------------VVNPIPVIRIEADPVSESGYQ 1228
K IV++ +P PL ++N P+I + A P
Sbjct: 1462 KSIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKLINSAPIIEVPATP------- 1514
Query: 1229 INNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNF---- 1284
EPI+E P +P + ++PE +I+D F D EIPT+ L EF +N +
Sbjct: 1515 ----EPIVELPATPEQEQIQAPEIDIEDTYFE--DPCEIPTIELNMAEFTQNLKKYVKNN 1568
Query: 1285 MEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPD 1344
ME+++V + S+ALVALT+EAAS+P KLK + LRTEH VY LPD+H LL G D+R+PD
Sbjct: 1569 MELHQVEI--SNALVALTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPD 1626
Query: 1345 DPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICY 1384
DP YLLAIW+PGE+ NS P+ +CNS++S KLC +E +
Sbjct: 1627 DPCSYLLAIWTPGETANSFQPPETQCNSQESGKLCENETMF 1667
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKEKRK-KLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
+A+V YQ G++VP RK K +P+V +D T R+W L++ + D T
Sbjct: 807 SALVLYQ-----RDGSIVPFGSSLVRKRKPRPKVDVDDETDRVWKLLLQDINSEGVDGT- 860
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
+ED KWW++ER VF R SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 861 DEDKAKWWEEERRVFNSRADSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLS 920
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAA FPLK+
Sbjct: 921 SSAFMSLAAHFPLKT 935
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 43/139 (30%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSG------ 55
+ HRP+V+VEG PK+ PK + Q P T KRKYVR+N V
Sbjct: 289 RKHRPKVVVEGKPKRTPKRRTEKQ---------PGSVETKTEKRKYVRRNKVGSPAPTSA 339
Query: 56 ---NVVMDESVS---------KRRKCGR-------------GNRQSNSDAIILLPPPPIK 90
N +DE + KR+ R GN + + LP K
Sbjct: 340 EEVNNTIDEGKTPSSKETPPAKRKYVRRNQVKKSTEKPSEEGNGGTTEPKKVSLPR---K 396
Query: 91 TCRQALNFDLENQSRDDKA 109
+CR+ LNF+ E Q+ D+ +
Sbjct: 397 SCRRTLNFEFERQASDENS 415
>gi|45935143|gb|AAS79601.1| putative endonuclease III protein [Ipomoea trifida]
gi|118562896|dbj|BAF37786.1| hypothetical protein [Ipomoea trifida]
Length = 1687
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 282/634 (44%), Positives = 351/634 (55%), Gaps = 125/634 (19%)
Query: 953 KSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEI 1012
KS K + K PK + D W+ LRR Y MDS+DW AVRCA EI
Sbjct: 1098 KSTEKKGKVTKMMPKPDVD------WEELRRTYYNPNRTPGTLMDSIDWNAVRCAPVGEI 1151
Query: 1013 ADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVE 1072
A I+ RG N++A +IK FL+RLVE HGSIDLEWL++VPP+K KE+LL I G+GLKS E
Sbjct: 1152 AKVIENRGMNNVLAEKIKAFLDRLVEDHGSIDLEWLKDVPPEKAKEFLLSIRGVGLKSTE 1211
Query: 1073 CVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLC 1132
CVRLL+L H AFPVD N+ RI VRLGWVPL+PLPGDL IHLL +
Sbjct: 1212 CVRLLTLGHHAFPVDTNIARIVVRLGWVPLEPLPGDLQIHLLDQ---------------- 1255
Query: 1133 YLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK-G 1191
Y LHYQ+ITFGK+ C K++PNC ACP+R ECKHFASA AS+R L G EK G
Sbjct: 1256 -------YVLHYQLITFGKVICTKKNPNCNACPMRAECKHFASAFASSRLRLRGAPEKPG 1308
Query: 1192 IVTSE---------------FGNG-IGQSPPLVVNPIPVIRIEADPV------------- 1222
+ S+ F + I Q P + I + +ADP
Sbjct: 1309 MSNSQPMLPHIPDIEDFPYKFKDSHIRQQPSALA--IEIASQDADPTRGLVRDIEDFPYE 1366
Query: 1223 ----------SESGYQINN---------CEPIIEEPRS-------------------PGP 1244
E Y+++N CEPIIE P S P P
Sbjct: 1367 LGNKYEILASQEFPYELDNKDEKSYTQTCEPIIEVPASLEPESQTCEPIIEVPASPEPEP 1426
Query: 1245 QCSESPESEI--------DDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSS 1296
+ + S E +I DDDD EIP ++L EFK N F+ + S+
Sbjct: 1427 ESTVSLERDISNILHETEDDDD-------EIPHIKLDTEEFKRNLKTFLNSEFEDEEVSN 1479
Query: 1297 ALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSP 1356
ALVALT + ++P K+K LRT H VY++PD+H LL GF+RR+ DDP PYLLAIW P
Sbjct: 1480 ALVALTPQDTTIPAPKIKSVERLRTRHRVYIVPDSHPLLIGFERRELDDPCPYLLAIW-P 1538
Query: 1357 GESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLN 1416
ES N S C S+DS +C+ ++ ++ E N V GTILIPCRTAN+G FPLN
Sbjct: 1539 QESLNVKES----C-SQDSLICSGDL---DSAFQETNNQTVCGTILIPCRTANKGSFPLN 1590
Query: 1417 GTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRG 1476
GTYFQVNEVFADHE+S PIN+PR I NL + + GS+A+ + + M +IQ FW G
Sbjct: 1591 GTYFQVNEVFADHESSVCPINIPRKWIWNLTQRYLYCGSTASAIARGMQMDEIQHCFWNG 1650
Query: 1477 FVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKR 1510
FVCVR FDR+ R P L R H PS AG K+
Sbjct: 1651 FVCVRAFDRQTRNPIHLSKRFHELPSL--AGKKK 1682
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 133/236 (56%), Gaps = 26/236 (11%)
Query: 493 DIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPH--QIKEKR 550
+II+K + L I D QL ++ N+H AV+P+ + GA++P+ ++++KR
Sbjct: 719 EIIQKLQRLQISDEHGQLVVR------DLNLHGAVIPFN---NKFDGAIIPYNNKLEKKR 769
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
K P+V LDP +LR WNL+M D + + +E +K W++++E+F R++ F MH
Sbjct: 770 KMPMPKVDLDPESLRRWNLLMETD-ASELPEDEDEKKKKDWEEQKEIFCSRLKEFITCMH 828
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS----SSAYMSLAARFPLKSTNDHTPSD 666
++ GDRRF PWKGSVVDSVVGV+LTQNVSD LS S+A+M LAA++ + ST+ D
Sbjct: 829 VLQGDRRFSPWKGSVVDSVVGVFLTQNVSDYLSRFFYSNAFMYLAAKYGVTSTSCDIQVD 888
Query: 667 ENLRTTASLEPIGSNSTSNGAVYDSE--------GNMYFVTEP--EPDRCCELKDR 712
++ P G N+ + + S G+ V P D CC D+
Sbjct: 889 SPCSQESTSNPTGPNNVQSHETFISSAEKEPGSLGDDRVVKHPPVNHDFCCSSPDK 944
>gi|26451047|dbj|BAC42629.1| unknown protein [Arabidopsis thaliana]
gi|28950995|gb|AAO63421.1| At5g04570 [Arabidopsis thaliana]
Length = 416
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/412 (55%), Positives = 287/412 (69%), Gaps = 7/412 (1%)
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
+GWVPLQPLP L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC K
Sbjct: 1 MGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTK 60
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV-I 1215
PNC ACP+RGEC+HFASA ASAR ALP P E+ + ++ PP+ + I + +
Sbjct: 61 SRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPL 120
Query: 1216 RIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQER 1275
+E S + NCEPIIEEP SPG +C+E ES+I+D ++ D +EIPT++L
Sbjct: 121 PLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYN-EDPDEIPTIKLNIE 179
Query: 1276 EFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAH 1332
+F ME N + LQ+ S ALVAL S+PT KLK + LRTEH VY LPD+H
Sbjct: 180 QFGMTLREHMERN-MELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSH 238
Query: 1333 ELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCE 1391
LL G D+R+PDDPSPYLLAIW+PGE+ NS P+ +C K S K+C E C CNS+ E
Sbjct: 239 RLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLRE 298
Query: 1392 RNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIV 1451
N+ VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S PI+VPR I +L R V
Sbjct: 299 ANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTV 358
Query: 1452 CFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
FG+S T++F L QIQ FW+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 359 YFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 410
>gi|357495073|ref|XP_003617825.1| DNA glycosylase [Medicago truncatula]
gi|355519160|gb|AET00784.1| DNA glycosylase [Medicago truncatula]
Length = 1004
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/551 (44%), Positives = 329/551 (59%), Gaps = 64/551 (11%)
Query: 976 QDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1035
Q W+ LR+I+S ++ D DSVDWEAVR A+ +E+A AIK+RGQQNIIA +I+ L
Sbjct: 452 QHWETLRKIHSKSDQHI-DHADSVDWEAVRDANVNEVAAAIKKRGQQNIIAYKIQVALKG 510
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAV 1095
+ HGS++LEWL+++PP++ KEY L I GLGLKSVEC+RLL+LQHI+FPVDVNVGRI V
Sbjct: 511 FMVNHGSMNLEWLKDIPPNEAKEYFLSIFGLGLKSVECLRLLTLQHISFPVDVNVGRIVV 570
Query: 1096 RLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK 1155
RLGWVPLQPLP + IH L+++P KIQ YLWPRLC LD +TLYELHYQ+ITFGK+FC
Sbjct: 571 RLGWVPLQPLPESIQIHNLEKFPDPIKIQQYLWPRLCKLDHQTLYELHYQLITFGKVFCT 630
Query: 1156 KRSPNCGACPLRGECKHFASAVASARFALP--GPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
KR+PNC ACP++ CK++AS++A + ALP +++ IV ++ + S +
Sbjct: 631 KRNPNCNACPMKDGCKYYASSLARTKLALPPKSTTDQSIVATQMDHCFPYSDYWSNSTST 690
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDI--------- 1264
+ E+ CEPI+E P SP IDDD+ D
Sbjct: 691 LFTKES----------KECEPIVEMPASP---------ELIDDDEEIYHDYTYESDEEDI 731
Query: 1265 --------------EEIPTLRLQEREFKENFP---NFMEMNKVMLQDSSALVALTAEAAS 1307
E+IPT + +E P N E + S +LVA A +
Sbjct: 732 ESDEEDIESDEEDIEDIPTFNISSQESSSCLPMYGNSFEEFDHGVNASQSLVAFHPNATN 791
Query: 1308 VPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
K+K + L+TE VYVL D H LL + R+ DDPSPYLL +W P E +S S +
Sbjct: 792 SHLSKMKNASRLKTERTVYVLTDNHPLLAEYPSREHDDPSPYLLVVWRPAELESSGESSK 851
Query: 1368 YRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFA 1427
+ ++S + V GT+LIPCRTA R RFPLNGTYFQVNEVFA
Sbjct: 852 TDLHEEESSQTET----------------VPGTLLIPCRTAMRARFPLNGTYFQVNEVFA 895
Query: 1428 DHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRY 1487
D+ + PI+VPR I +L+++I FG+ A+++ L M +I+++F +GF+CVR D
Sbjct: 896 DYASMKKPIHVPRKWIWSLKKQIAYFGTGASSMTRGLSMEEIKDFFCKGFICVRAIDTNT 955
Query: 1488 RCPRPLVNRLH 1498
PRP+ + LH
Sbjct: 956 GAPRPISSILH 966
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 556 EVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGD 615
EV+LD TLR+WNL++ K + ++E ++W+ R+++ + SF ++H + GD
Sbjct: 289 EVMLDEETLRVWNLLV----VENKHEENDEHKRRYWEMIRKLYHKMVISFLDQVHTVQGD 344
Query: 616 RRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK 657
RRF PWKGSV+DSV GV+LTQNVSD+LSSSA+MSLAARFP+K
Sbjct: 345 RRFLPWKGSVLDSVGGVFLTQNVSDHLSSSAFMSLAARFPVK 386
>gi|147785279|emb|CAN77395.1| hypothetical protein VITISV_035357 [Vitis vinifera]
Length = 1824
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/551 (47%), Positives = 332/551 (60%), Gaps = 74/551 (13%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAI 1016
+ KK ++ NT+ WD LR+ + ER+ + MDS+DWEAVRC+D +EIA+ I
Sbjct: 1262 KAKKGKARREEKNTLH--WDNLRKEAQVNGRKRERTVNTMDSLDWEAVRCSDVNEIANTI 1319
Query: 1017 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
KERG N++A RIK+FLNRLV HGSIDLEWLR+VPPDK KEYLL GLGLKSVECVRL
Sbjct: 1320 KERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 1379
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
L+L H+AFPVD NVGRIAVRLGWVPLQPLP L L
Sbjct: 1380 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ-----------------------LHL 1416
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
LYELHYQMITFGK+FC K PNC ACP+RGEC+HFASA ASAR AL GP E+ IV++
Sbjct: 1417 LELYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALTGPEERSIVSTN 1476
Query: 1197 FGNGIGQSPPLVVNPIPVIRIEADP-VSESGYQINNCEPIIEEPRSPGPQCSESPESEID 1255
+ +P + +NP+P+ SE+ INNCEPI+E P +P + + ES+I+
Sbjct: 1477 ANESMDGNPDVTINPLPLPPPLPQKQSSEANPGINNCEPIVEVPATPEQEHPQILESDIE 1536
Query: 1256 DDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKL 1313
D + D +EIPT++L EF N N+M+ N + + S ALVALT E AS+P KL
Sbjct: 1537 DTLYE--DPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALTPEVASIPMPKL 1594
Query: 1314 KRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK 1373
K + LRTEHHV+ + + F SP+ PQ +
Sbjct: 1595 KNVSRLRTEHHVWTKENLMIHVHTF--------SPF---------------GPQVKLQIP 1631
Query: 1374 DSKLCNSEICYSC-NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
+ L + + V +R+A +IPCRTA RG FPLNGTYFQVNEVFADH++S
Sbjct: 1632 FNHLKEXVAXRNLEDYVMKRHA----SRAIIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 1687
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
+PI+VPR I NL R V FG+S T+F +GFVCVRGFD++ R PRP
Sbjct: 1688 LNPIDVPRAWIWNLPRRTVYFGTSIPTIF-------------KGFVCVRGFDQKTRAPRP 1734
Query: 1493 LVNRLHCSPSK 1503
L+ RLH S+
Sbjct: 1735 LMARLHFPASR 1745
Score = 100 bits (250), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 112/181 (61%), Gaps = 16/181 (8%)
Query: 494 IIRKFKDLTIRDGGSQLPLQCNKADGPSNVH----NAVVPYQVGPSSEHGALVPHQIK-- 547
II + K L I + S++ Q A P N++ NA+V Y+ G +VP +
Sbjct: 725 IIEQLKHLDI-NRESKISYQEQNALVPYNMNKEEKNALVLYK-----RDGTIVPFEDSFG 778
Query: 548 -EKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFT 606
K+++ +P V LD T R+W L+M + D T +E+ KWW++ER VF GR SF
Sbjct: 779 LVKKRRPRPRVDLDEETSRVWKLLMGNINSEGIDGT-DEEKAKWWEEERNVFRGRADSFI 837
Query: 607 ARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSD 666
ARMHL+ GDRRF W GSVVDSVVGV+LTQNVSD+LSSSA+MSLAA FP K +H PS
Sbjct: 838 ARMHLVQGDRRFSKWXGSVVDSVVGVFLTQNVSDHLSSSAFMSLAAHFPCKC--NHRPST 895
Query: 667 E 667
E
Sbjct: 896 E 896
Score = 46.6 bits (109), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 40/136 (29%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQQPKTPKPVTP---NRAHETTRKRKYVRKNSV----- 53
K HRP+V++EG PK +TPKPV P T KRKYVRKN V
Sbjct: 239 KKHRPKVVIEGKPK------------RTPKPVNPKCTGSQGNPTGKRKYVRKNGVNKPST 286
Query: 54 -SGNVVMDESVSKRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLENQSRDDKAIII 112
S +M S R P + +CR+ LNFD ++R + I
Sbjct: 287 NSPAEIMGRSTEPER-----------------PERTMMSCRRGLNFDDNGRARGGSSSCI 329
Query: 113 AIPECGV--QALDECA 126
+ + QA D C
Sbjct: 330 STSDLNSEPQAQDFCT 345
>gi|186516091|ref|NP_001119112.1| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|332660917|gb|AEE86317.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/458 (50%), Positives = 291/458 (63%), Gaps = 14/458 (3%)
Query: 977 DWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
DW+ LRR+Y+ R MDSV+W VR + ++ + IK+RGQ I++ RI +FLN
Sbjct: 501 DWNNLRRMYTKEGSRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDE 560
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
V +G+IDLEWLRN P VK YLL+IEG+GLKS ECVRLL L+H AFPVD NVGRIAVR
Sbjct: 561 VNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVR 620
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LG VPL+PLP + +H L EYP MD IQ YLWPRLC L Q+TLYELHYQMITFGK+FC K
Sbjct: 621 LGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTK 680
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP++ ECK+FASA S++ L P EK + F N Q + V+ I
Sbjct: 681 TIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMNAHSQD--VAVDMTSNIN 738
Query: 1217 IEADPVSESGYQINNC-EPIIEEPRSPGPQCSESPESEIDDDDFS--IGDIEEIPTLRLQ 1273
+ + VS C +P++E P SP + ES ++I+D F +P +
Sbjct: 739 LVEECVSSGCSDQAICYKPLVEFPSSPRAEIPES--TDIEDVPFMNLYQSYASVPKIDFD 796
Query: 1274 EREFKENFPNFMEMNKVMLQD----SSALVALTAEAASVPT---RKLKRCAHLRTEHHVY 1326
K++ + + ++ M S ALV T E A +P RK+K LRTEH VY
Sbjct: 797 LDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVY 856
Query: 1327 VLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSC 1386
VLPD HELL F+RR DDPSPYLLAIW PGE+ +S P+ +C+S SKLC + C C
Sbjct: 857 VLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSSDGSKLCKIKNCSYC 916
Query: 1387 NSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNE 1424
++ E+N+ I RGTILIPCRTA RG FPLNGTYFQ NE
Sbjct: 917 WTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNE 954
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 542 VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGR 601
V IK +K + +V LDP T++ W+++M ++D ++ E KW +KERE+F+ R
Sbjct: 334 VTTMIKADKKLVTAKVNLDPETIKEWDVLM-VNDSPSRSYDDKETEAKW-KKEREIFQTR 391
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
I F RMH + G+R+FK WKGSVVDSVVGV+LTQN +D LSS+A+MS+AA+FP+
Sbjct: 392 IDLFINRMHRLQGNRKFKQWKGSVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFPV 446
>gi|302818184|ref|XP_002990766.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
gi|300141504|gb|EFJ08215.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
Length = 470
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 239/499 (47%), Positives = 303/499 (60%), Gaps = 55/499 (11%)
Query: 1023 NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
NI+AGR+K FL+R+ E HGSIDLEW+R+VPP K++LL I GLGLKSVEC+RLL+L H+
Sbjct: 3 NILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALDHL 62
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
AFPVD NVGRI VRLGWVP+QPLP +L +HLL+ YPV + +Q Y+WPRLC LD+ TLYEL
Sbjct: 63 AFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYIWPRLCTLDRLTLYEL 122
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIG 1202
HYQMITFGK+FC K PNC ACP+R EC+HFASA ASAR ALP P + + G+ G
Sbjct: 123 HYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQ---CQQQGDKAG 179
Query: 1203 QS---------PPLVVNPIPVIRIEADPVSESGYQINNCEPII------EEPRSPGPQCS 1247
PP+ + P + + A P CEPII E
Sbjct: 180 PQQQEEVLTLPPPVSLPPATLTNVVATP--------KKCEPIIEEPGSPEPEPESESCEG 231
Query: 1248 ESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAAS 1307
S +++D F+ G TL L E + P + V S L+ L E A
Sbjct: 232 SSTCPDMEDLLFTQGS----ETLHLNLIEQTQAPPQY----TVASASSKELMVLPPEFAY 283
Query: 1308 VPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQ 1367
+P KLK LRT H+VY LPD H L++ + R+ DDP YLLA+WS E P
Sbjct: 284 IPVPKLKNIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDEQP------- 336
Query: 1368 YRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFA 1427
++S+L N + + V+GT+LIPCRTA RG FPLNGTYFQVNEVFA
Sbjct: 337 -----QNSQLENQQ---------RVDDEFVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFA 382
Query: 1428 DHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRY 1487
D ET + P+NV R + NL R+ V FG+S +F L ++Q FW+G+VCVRGFDR+
Sbjct: 383 DSETGNFPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKGYVCVRGFDRKS 442
Query: 1488 RCPRPLVNRLHCSPSKKEA 1506
R PRPL RLH +PS ++
Sbjct: 443 RSPRPLAARLHIAPSNRKG 461
>gi|302809902|ref|XP_002986643.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|302809904|ref|XP_002986644.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145531|gb|EFJ12206.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145532|gb|EFJ12207.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
Length = 469
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 239/498 (47%), Positives = 303/498 (60%), Gaps = 54/498 (10%)
Query: 1023 NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
NI+AGR+K FL+R+ E HGSIDLEW+R+VPP K++LL I GLGLKSVEC+RLL+L H+
Sbjct: 3 NILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALDHL 62
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
AFPVD NVGRI VRLGWVP+QPLP +L +HLL+ YPV + +Q Y+WPRLC LD+ TLYEL
Sbjct: 63 AFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYVWPRLCTLDRLTLYEL 122
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIG 1202
HYQMITFGK+FC K PNC ACP+R EC+HFASA ASAR ALP P + + G+ G
Sbjct: 123 HYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQ---CEQQGDKAG 179
Query: 1203 QS--------PPLVVNPIPVIRIEADPVSESGYQINNCEPII------EEPRSPGPQCSE 1248
PP+ + P + + A P CEPII E
Sbjct: 180 AQQQEVLTLPPPVSLPPATLTNVVATP--------KKCEPIIEEPRSPEPEPESESCEGS 231
Query: 1249 SPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASV 1308
S +++D F+ G TL L E + P + V S L+ L E A +
Sbjct: 232 STCPDMEDLLFTQGS----ETLHLNLIEQPQAPPQY----TVASASSKELMVLPPEFAYI 283
Query: 1309 PTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQY 1368
P KLK LRT H+VY LPD H L++ + R+ DDP YLLA+WS E P
Sbjct: 284 PVPKLKNIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDEQP-------- 335
Query: 1369 RCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFAD 1428
++S+L N + + V+GT+LIPCRTA RG FPLNGTYFQVNEVFAD
Sbjct: 336 ----QNSQLENQQ---------RVDDEFVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 382
Query: 1429 HETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYR 1488
ET + P+NV R + NL R+ V FG+S +F L ++Q FW+G+VCVRGFDR+ R
Sbjct: 383 SETGNFPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKGYVCVRGFDRKSR 442
Query: 1489 CPRPLVNRLHCSPSKKEA 1506
PRPL RLH +PS ++
Sbjct: 443 SPRPLAARLHIAPSNRKG 460
>gi|138996994|dbj|BAF52858.1| repressor of silencing 3 [Nicotiana tabacum]
Length = 1662
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/455 (48%), Positives = 277/455 (60%), Gaps = 80/455 (17%)
Query: 977 DWDLLR---RIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR + ER+ + MDS+DWEAVRCA+ +EIA IKERG N +A RIK FL
Sbjct: 1260 DWDSLRLEAQANGKKRERTANTMDSLDWEAVRCANVNEIAHTIKERGMNNKLAERIKNFL 1319
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NR+V HGSIDLEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRI
Sbjct: 1320 NRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1379
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
AVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+T
Sbjct: 1380 AVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTF-------------- 1425
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSP-------P 1206
AR ALP EK IV++ +P P
Sbjct: 1426 --------------------------ARLALPAQEEKSIVSATENKASNNNPREKFTHLP 1459
Query: 1207 L--------------VVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPES 1252
L ++N P+I + A P EPI+E P +P + ++PE
Sbjct: 1460 LPLPPGNQQPVEHQKLINSAPIIEVLATP-----------EPIVELPATPEQEQMQAPEI 1508
Query: 1253 EIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVM--LQDSSALVALTAEAASVPT 1310
+I+D + D EIPT+ + EF +N ++E N + ++ S+ALVALT+EAAS+P
Sbjct: 1509 DIEDTYYE--DPCEIPTIEVNMAEFTQNLKKYVENNMELHQVEMSNALVALTSEAASIPV 1566
Query: 1311 RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC 1370
KLK + LRTEH VY LPD+H LL G D+R+PDDP YLLAIW+PGE+ NS P+ +C
Sbjct: 1567 PKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETANSFQPPETQC 1626
Query: 1371 NSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIP 1404
NS++S KLC +E C SCNS+ E ++ VRGT+LIP
Sbjct: 1627 NSQESGKLCENETCSSCNSIREAHSQTVRGTLLIP 1661
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 525 NAVVPYQVGPSSEHGALVPHQIKEKRK-KLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTS 583
+A+V YQ G++VP RK K +P+V +D T R+W L++ + D T
Sbjct: 821 SALVLYQ-----RDGSIVPFGSSLVRKRKPRPKVDVDDETDRVWKLLLQDINSEGVDGT- 874
Query: 584 NEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLS 643
+ED KWW++ER VF R SF ARM L+ GDRRF PWKGSVVDSVVGV+LTQNVSD+LS
Sbjct: 875 DEDKAKWWEEERRVFNSRADSFIARMRLVQGDRRFSPWKGSVVDSVVGVFLTQNVSDHLS 934
Query: 644 SSAYMSLAARFPLKS 658
SSA+MSLAA FPLK+
Sbjct: 935 SSAFMSLAAHFPLKT 949
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 41/138 (29%)
Query: 2 KNHRPRVLVEGMPKKEPKPKKAPQ----QPKT-------------PKPVTPNRAHETT-- 42
+ HRP+V+VEG PK+ PKP+ Q + KT P P + H T
Sbjct: 303 RKHRPKVVVEGKPKRTPKPRTEKQPGSVETKTEKRKYVRRNKVGSPAPTSAEEVHNTIDN 362
Query: 43 -----------RKRKYVRKNSVSGNVVMDESVSKRRKCGRGNRQSNSDAIILLPPPPIKT 91
KRKYVR+N V + E S+ G +++ S PP K+
Sbjct: 363 GKTPSSKETPPAKRKYVRRNQVKKST---EQPSEEGSSGTTDQKKVS--------PPRKS 411
Query: 92 CRQALNFDLENQSRDDKA 109
CR+ LNF+ E Q+ D+ +
Sbjct: 412 CRKTLNFEFERQASDENS 429
>gi|115446223|ref|NP_001046891.1| Os02g0496500 [Oryza sativa Japonica Group]
gi|48716417|dbj|BAD23025.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|48716542|dbj|BAD23146.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|113536422|dbj|BAF08805.1| Os02g0496500 [Oryza sativa Japonica Group]
Length = 1207
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 235/552 (42%), Positives = 304/552 (55%), Gaps = 71/552 (12%)
Query: 978 WDLLRR-IYSTGEE-RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1035
WD LR YS G + + DS DWEAV A EIA++I RGQ +IA RI+ FL R
Sbjct: 677 WDKLREEAYSKGYKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIALRIQAFLKR 736
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAV 1095
+ + HG+ DL+WLR VP + K YL+ I GLG KSV+C+RLLSL+H FPVDVNV RI
Sbjct: 737 VKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPVDVNVARIVT 796
Query: 1096 RLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK 1155
RLGWV LQPLP HL+ YP+M +Q YLWPRLC + ++ LYELH MITFGK C
Sbjct: 797 RLGWVKLQPLPFSAEFHLVGLYPIMRDVQKYLWPRLCTISKEKLYELHCLMITFGKAICT 856
Query: 1156 KRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNP---- 1211
K SPNC ACP +CK++ S++ AR +LP P+E G+ G+ P
Sbjct: 857 KVSPNCRACPFSAKCKYYNSSL--ARLSLP-PAEG------HGHEYGEEQASTATPGRLL 907
Query: 1212 --------------IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESP-ESEIDD 1256
P I+I ES Y+ CEPIIE P SP + ESP E E+ +
Sbjct: 908 LSNDSHIAGFQQVCQPQIKINMPAGRESIYK---CEPIIEIPPSPEHEYEESPYEQELYE 964
Query: 1257 DDFSIGDIEE-IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKR 1315
DD DIE+ IP L+ + + + L + ++ ASV ++LK
Sbjct: 965 DDLC--DIEDTIPELQYDFEIDLCSLKHTVNNGSWTPNSGKDLALINSQHASVQNKRLKN 1022
Query: 1316 CAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS 1375
LRTEH+ YVLPD H +L F+ R P+DP PYLL + S
Sbjct: 1023 IGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVVIS-------------------- 1062
Query: 1376 KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHP 1435
C+ E V+GTILIPCRTA RG FPLNGTYFQ +EVFADH +S P
Sbjct: 1063 --CSDE-------------HTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSSRSP 1107
Query: 1436 INVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVN 1495
I +PR I NL R IV FGSS ++ + I++ + +G++CVRGFDR R P+P+
Sbjct: 1108 ITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKPICA 1167
Query: 1496 RLHCSPSKKEAG 1507
+LH + + G
Sbjct: 1168 KLHATNERNGTG 1179
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 522 NVHNAVVPYQVGPS-SEHGALVPHQ------IKEKR---KKLKPEVV-LDPGTLRMWNLI 570
N +A+VPYQ P+ + ALVP Q I R K L+ +V+ LD TL+++N++
Sbjct: 408 NGESALVPYQKAPAATSSSALVPIQNSTQLAIVHHRNHLKNLRTKVLGLDEKTLQVYNVL 467
Query: 571 MNIDDGTTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
D+ D S E ++ W + R FE + F A +H +LG RRF W GSV
Sbjct: 468 RKWDE---TDSESFEGVDIGSGPEWNETRRHFEHYVDVFIATVHGLLGPRRFSEWGGSVT 524
Query: 627 DSVVGVYLTQNVSDNLSSSAYMSLAARFP 655
DSVVG +LTQNV+DNLSS+A+++L A+FP
Sbjct: 525 DSVVGTFLTQNVADNLSSNAFLNLVAKFP 553
>gi|218190787|gb|EEC73214.1| hypothetical protein OsI_07297 [Oryza sativa Indica Group]
Length = 1165
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/456 (47%), Positives = 276/456 (60%), Gaps = 79/456 (17%)
Query: 977 DWDLLRR--IYSTGEERSHDKM-DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ + + G + DK D++DWEA +FL
Sbjct: 751 DWDNLRKEVLRNHGNRQRSDKAKDTIDWEA---------------------------DFL 783
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR++ PDK K++LL I GLGLKS ECVRLL+L +AFPVD NV RI
Sbjct: 784 NRLVRDHGSIDLEWLRDIEPDKAKDFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNVARI 843
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ Y+WPRLC LDQ LYELHYQMITFGK+F
Sbjct: 844 CVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYIWPRLCKLDQLILYELHYQMITFGKVF 903
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR ALPGPS+K E+ N S +
Sbjct: 904 CSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKK-TSKPEYPNDAESSHKKYTH--- 959
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ P+ + + N+ PG E+ E+EI +DF D +EIP + L
Sbjct: 960 -----SRPMGQLSWNTNH----------PG-HVYEAREAEI--EDFFSEDPDEIPIINLN 1001
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
+EF +N +++ N + ++D S+ALVA++ +AASVPT KLK LRTEH VY LPD
Sbjct: 1002 VKEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNVNRLRTEHQVYELPD 1061
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSP-----------------------GESPNSVGSPQ 1367
+H LL GFD+R+PDDPSPYLL+IW+P GE+ S +P+
Sbjct: 1062 SHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIKISTGETAQSTDAPK 1121
Query: 1368 YRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTIL 1402
CNSK++ K C S C+SCNS E + VRGT+L
Sbjct: 1122 TFCNSKETGKFCESSTCFSCNSTREMQSQKVRGTLL 1157
Score = 127 bits (319), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVF 598
GALVP + K K++ EV +DP T MWNL+M +D + +ED E+ ++ER +F
Sbjct: 298 GALVPLEGKVKKRGSWAEVKIDPVTNLMWNLLMALDKCEGVEGI-DEDKERLLEEERRMF 356
Query: 599 EGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
GRI SF ARMHL+ GDRRF PWKGSVVDSVV V+LTQNVSD+LSSSA+M+LAARFP+KS
Sbjct: 357 RGRIDSFIARMHLVQGDRRFSPWKGSVVDSVVDVFLTQNVSDHLSSSAFMALAARFPVKS 416
Query: 659 TNDHTPS 665
P+
Sbjct: 417 EGPEKPA 423
>gi|297802586|ref|XP_002869177.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
gi|297315013|gb|EFH45436.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
Length = 1072
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/555 (41%), Positives = 309/555 (55%), Gaps = 65/555 (11%)
Query: 971 DNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIK 1030
D TV DW LR++Y+ R MDSV+W VR + + I+ RGQ I++ RI
Sbjct: 553 DETV--DWKTLRKMYTKEGSRPKMHMDSVNWSDVRLSGQKVFETTIRRRGQFRILSERIL 610
Query: 1031 EFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNV 1090
+FLN V+ +G++DLEWLRN P D VK YLL+IEG+GLKS ECVRLL L+H AFPVD NV
Sbjct: 611 KFLNDEVQHNGTLDLEWLRNAPSDLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNV 670
Query: 1091 GRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMI--- 1147
GRIAVRLGWVPL+PLP + +H Q++ +LC+L + ++HY
Sbjct: 671 GRIAVRLGWVPLEPLPNGVQMH-----------QLF---QLCFLIN-LIKKIHYTFTNNY 715
Query: 1148 -------TFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNG 1200
+F ++FC K PNC ACP++ ECK+FASA S++ L GP EK F N
Sbjct: 716 LLSIKTNSF-QVFCTKVIPNCNACPMKSECKYFASAYVSSKVLLEGPEEKMHEPDTFMNA 774
Query: 1201 IGQSPPL-VVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDF 1259
Q + + + I +I P Q C+P++E P SP + ES ++I+D F
Sbjct: 775 YSQDADVDMTSNINLIEECVSPGCSD--QAICCKPLVEFPSSPRAEIPES--TDIEDIPF 830
Query: 1260 --SIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD-----SSALVALTAEAASVPT-- 1310
+P + K+N + + ML S ALV LT E A +P
Sbjct: 831 INPYQLYARVPKIDFDMDALKKNVEDALVKGGRMLSSSDEEISKALVVLTPENACIPIKP 890
Query: 1311 -RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYR 1369
RK+K LRTEH VYVLPD HELL F+RR+ DDPSPYLLAIW PGE+ +S P+ +
Sbjct: 891 PRKMKYYDRLRTEHVVYVLPDNHELLHDFERRELDDPSPYLLAIWQPGETSSSFIPPKKK 950
Query: 1370 CNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADH 1429
CNS SKLC + C C ++ E+++ RGTIL VFADH
Sbjct: 951 CNSDGSKLCKIKSCSYCWTIREQSSNTFRGTIL----------------------VFADH 988
Query: 1430 ETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRC 1489
ETS PI PR L + + GSS T++F LD R+IQ FW GF+C+R FDR+ R
Sbjct: 989 ETSLKPIVFPRELCDGLEKRALYCGSSVTSIFRFLDTRRIQLCFWTGFLCMRAFDRKQRY 1048
Query: 1490 PRPLVNRLHCSPSKK 1504
P+ LV RLH P ++
Sbjct: 1049 PKELVRRLHTPPDER 1063
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 110/183 (60%), Gaps = 17/183 (9%)
Query: 479 QVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEH 538
Q+ ++ S+ AD+ +D ++ S LP Q K ++ + E
Sbjct: 311 QISYQKYHSLSSLADVPLHIEDTLMKSASSVLPEQPIKKT--KDIAKLI--------KEM 360
Query: 539 GAL-----VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQK 593
G L V IK +K + +V LDP T++ W L+M ++D ++ ++++ E W+K
Sbjct: 361 GRLKINKRVTTMIKSAKKLVTAKVSLDPETIKEWELLM-VNDLPSR-SYADKETEAKWKK 418
Query: 594 EREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAAR 653
ERE+F+ RI F RMHL+ G+R+FK WKGSVVDSVVGV+LTQNV+D LSS+A+MS+AA+
Sbjct: 419 EREIFQSRIDLFINRMHLLQGNRKFKQWKGSVVDSVVGVFLTQNVTDYLSSNAFMSVAAK 478
Query: 654 FPL 656
FP+
Sbjct: 479 FPV 481
>gi|357510919|ref|XP_003625748.1| DNA glycosylase [Medicago truncatula]
gi|355500763|gb|AES81966.1| DNA glycosylase [Medicago truncatula]
Length = 497
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/448 (47%), Positives = 270/448 (60%), Gaps = 81/448 (18%)
Query: 1140 YELHYQMITFGKI--------------------------FCKKRSPNCGACPLRGECKHF 1173
YELHYQ+ITFGK+ FC K PNC ACP+RGEC+HF
Sbjct: 16 YELHYQLITFGKVNYISHASETDHILVKSSLNLNQCMQVFCTKSKPNCNACPMRGECRHF 75
Query: 1174 ASAVASARFALPGPSEK---GIVTSEFGNGIGQSPPLVVNPIPV---------------- 1214
ASA ASAR ALPGP +K +V + N Q+P VN +P+
Sbjct: 76 ASAFASARLALPGPEQKEQKNLVITTGNNATDQNPSTTVNQLPLSLPGLEQKNIEITTGT 135
Query: 1215 --------IRIEADPVS--------------------ESGYQINNCEPIIEEPRSPGPQC 1246
+ I P+S E +INNC+PIIEEP +P P+C
Sbjct: 136 DATDQNSSVVINQLPLSLSENKNQTEELQQTVAIRQLEMNSEINNCQPIIEEPTTPEPEC 195
Query: 1247 SESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTA 1303
S E++I+D F + EIPT+ L EF N N+M+ N + LQ+ S ALVAL
Sbjct: 196 SHVSENDIED--FFYEESNEIPTINLDIEEFTLNLQNYMQEN-MELQEGEMSKALVALNQ 252
Query: 1304 EAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSV 1363
EAA +PT KLK + LRTEH VY LPD+H LL G+++R+PDDP YLLAIW+PGE+ NS+
Sbjct: 253 EAAYIPTTKLKNVSRLRTEHSVYELPDSHPLLEGWEKREPDDPGKYLLAIWTPGETANSI 312
Query: 1364 GSPQYRCNSKD-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQV 1422
P RC+++D +LCN E C+SCNS E N+ IVRGTILIPCRTA RG FPLNGTYFQV
Sbjct: 313 QPPDRRCSAQDCGQLCNEEECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQV 372
Query: 1423 NEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRG 1482
NEVFADHE+S +PI+VPR I NL R V FG+S T++F L +IQ+ FWRGFVCVRG
Sbjct: 373 NEVFADHESSLNPISVPRSLIWNLDRRTVHFGTSVTSIFKGLATPEIQQCFWRGFVCVRG 432
Query: 1483 FDRRYRCPRPLVNRLHCSPSKKEAGSKR 1510
F+R R PRPL+ RLH P+ + A +K+
Sbjct: 433 FERSTRAPRPLMARLH-FPASRLAKNKK 459
>gi|115446213|ref|NP_001046886.1| Os02g0494700 [Oryza sativa Japonica Group]
gi|113536417|dbj|BAF08800.1| Os02g0494700 [Oryza sativa Japonica Group]
Length = 1648
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/458 (47%), Positives = 283/458 (61%), Gaps = 71/458 (15%)
Query: 977 DWDLLRR--IYSTGEERSHDKM-DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ +++ G + DK D++DWEA +FL
Sbjct: 1222 DWDNLRKEVLHNHGNRQRSDKAKDTIDWEA---------------------------DFL 1254
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR++ PDK K +LL I GLGLKS ECVRLL+L +AFPVD NV RI
Sbjct: 1255 NRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNVARI 1314
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ Y+WPRLC LDQ LYELHYQMITFGK+F
Sbjct: 1315 CVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLILYELHYQMITFGKVF 1374
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR ALPGPS+K E+ N S + P
Sbjct: 1375 CSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKK-TSKPEYPNDAESSHKKYTHSRP 1433
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQ--CSESPESEIDDDDFSIGDIEEIPTLR 1271
+ ++ + + G+ + EP +P P+ +E+ E+EI +DF D +EIP +
Sbjct: 1434 MGQLSWN-TNHPGH--------VYEPSTPEPEPDIAEAREAEI--EDFFSEDPDEIPIIN 1482
Query: 1272 LQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVL 1328
L EF +N +++ N + ++D S+ALVA++ +AASVPT KLK LRTEH VY L
Sbjct: 1483 LNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNVNRLRTEHQVYEL 1542
Query: 1329 PDAHELLRGFDRRDPDDPSPYLLAIWSP-----------------------GESPNSVGS 1365
PD+H LL GFD+R+PDDPSPYLL+IW+P GE+ S +
Sbjct: 1543 PDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIKISTGETAQSTDA 1602
Query: 1366 PQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTIL 1402
P+ CNSK++ KLC S C+SCNS E + VRGT+L
Sbjct: 1603 PKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1640
Score = 142 bits (359), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVF 598
GALVP + K K++ + EV +DP T MWNL+M +D + +ED E+ ++ER +F
Sbjct: 769 GALVPLEGKVKKRGSRAEVKIDPVTNLMWNLLMALDKCEGVEGI-DEDKERLLEEERRMF 827
Query: 599 EGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
GRI SF A MHL+ GDRRF PWKGS+VDSVV V+LTQNVSD+LSSSA+M+LAARFP+KS
Sbjct: 828 RGRIDSFIAHMHLVQGDRRFSPWKGSIVDSVVDVFLTQNVSDHLSSSAFMALAARFPVKS 887
Query: 659 TNDHTPS 665
P+
Sbjct: 888 EGPEKPA 894
>gi|222622896|gb|EEE57028.1| hypothetical protein OsJ_06806 [Oryza sativa Japonica Group]
Length = 1615
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/456 (47%), Positives = 276/456 (60%), Gaps = 79/456 (17%)
Query: 977 DWDLLRR--IYSTGEERSHDKM-DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DWD LR+ +++ G + DK D++DWEA +FL
Sbjct: 1201 DWDNLRKEVLHNHGNRQRSDKAKDTIDWEA---------------------------DFL 1233
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
NRLV HGSIDLEWLR++ PDK K +LL I GLGLKS ECVRLL+L +AFPVD NV RI
Sbjct: 1234 NRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNVARI 1293
Query: 1094 AVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
VRLGWVPLQPLP L +HLL+ YP+++ IQ Y+WPRLC LDQ LYELHYQMITFGK+F
Sbjct: 1294 CVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLILYELHYQMITFGKVF 1353
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIP 1213
C K PNC +CP+R ECKHFASA ASAR ALPGPS+K E+ N S +
Sbjct: 1354 CSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKK-TSKPEYPNDAESSHKKYTH--- 1409
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ P+ + + N+ PG E+ E+EI +DF D +EIP + L
Sbjct: 1410 -----SRPMGQLSWNTNH----------PG-HVYEAREAEI--EDFFSEDPDEIPIINLN 1451
Query: 1274 EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 1330
EF +N +++ N + ++D S+ALVA++ +AASVPT KLK LRTEH VY LPD
Sbjct: 1452 VEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNVNRLRTEHQVYELPD 1511
Query: 1331 AHELLRGFDRRDPDDPSPYLLAIWSP-----------------------GESPNSVGSPQ 1367
+H LL GFD+R+PDDPSPYLL+IW+P GE+ S +P+
Sbjct: 1512 SHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIKISTGETAQSTDAPK 1571
Query: 1368 YRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTIL 1402
CNSK++ KLC S C+SCNS E + VRGT+L
Sbjct: 1572 TFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1607
Score = 142 bits (359), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVF 598
GALVP + K K++ + EV +DP T MWNL+M +D + +ED E+ ++ER +F
Sbjct: 748 GALVPLEGKVKKRGSRAEVKIDPVTNLMWNLLMALDKCEGVEGI-DEDKERLLEEERRMF 806
Query: 599 EGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
GRI SF A MHL+ GDRRF PWKGS+VDSVV V+LTQNVSD+LSSSA+M+LAARFP+KS
Sbjct: 807 RGRIDSFIAHMHLVQGDRRFSPWKGSIVDSVVDVFLTQNVSDHLSSSAFMALAARFPVKS 866
Query: 659 TNDHTPS 665
P+
Sbjct: 867 EGPEKPA 873
>gi|242077266|ref|XP_002448569.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
gi|241939752|gb|EES12897.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
Length = 901
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/551 (41%), Positives = 298/551 (54%), Gaps = 65/551 (11%)
Query: 977 DWDLLRR-IYSTG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
DW LR Y G ++ + D VDWE+V A SE+A I RGQ NI++ RI+E L
Sbjct: 385 DWKELREEAYKKGYNDKSGTETSDVVDWESVLNAPFSEVAKCIAVRGQHNILSVRIRELL 444
Query: 1034 NRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
+ + + GS DL+WLR + +K K+ LL I G G+KSV+C+ LLSL+H AFPVDVNV R
Sbjct: 445 DHVQKAQDGSFDLDWLRFISHEKAKKILLSIHGFGVKSVDCICLLSLRHRAFPVDVNVAR 504
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
I RLGWV LQPL G HL+ YP++D +Q YLWPRLC +D++ LYELH MITFGK+
Sbjct: 505 IVTRLGWVKLQPLNG-ADFHLINLYPLLDDVQRYLWPRLCTIDKEKLYELHCLMITFGKV 563
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALP-------GPSEKGIVTSEFGNGIGQSP 1205
C K++PNC ACP G C ++ S +A LP G + ++ S G+
Sbjct: 564 VCTKQNPNCRACPFSGSCIYYNSLLARKPLPLPEKHEYEQGEQQAKMIAS--GSCTPSFQ 621
Query: 1206 PLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESP-ESEIDDDDFSIGDI 1264
+ IP+ P I+NCEPIIE P SP + + +P E E D+ + DI
Sbjct: 622 QMYQYQIPISSTTETP------PIHNCEPIIEMPPSPEYEHNRTPNEQENSYGDYYVCDI 675
Query: 1265 EEIPTLRLQ-EREFK----ENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHL 1319
E+ +Q + E + PN N L + + + V +KLK L
Sbjct: 676 EDFAPEGVQYDAEINICSSKRVPN---SNSWTPSRGKDLAVINPKGSFVRNKKLKNIGRL 732
Query: 1320 RTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCN 1379
RTEH+ YVLPD H +L F+ R P D PYLL + S C
Sbjct: 733 RTEHNAYVLPDDHRILEEFEDRVPGDTCPYLLVVLS----------------------CP 770
Query: 1380 SEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVP 1439
+ V GT+LIPCRTANRG+FPLNGTYFQ NEVFAD+ +S +PI +P
Sbjct: 771 DDF-------------TVEGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPITIP 817
Query: 1440 RHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHC 1499
R I L+R IV FGSS ++ IQE F +G+VCVR F RR R P L LH
Sbjct: 818 RECIGLLKRSIVYFGSSIHSITKGQTREDIQECFKKGYVCVRAFHRRSRVPLRLCATLHA 877
Query: 1500 SPS-KKEAGSK 1509
+ + KK AG K
Sbjct: 878 TNTIKKPAGDK 888
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 526 AVVPYQVGPSSEHGALVP--HQIK------EKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
A++PYQ ++ AL P H + + KL+ +V+ L TLR++ ++
Sbjct: 125 ALLPYQRTVAASF-ALAPLWHSTELDIPRPQNHGKLQAKVLDLTDETLRVFAVL------ 177
Query: 577 TTKDQTSNEDMEKW-------WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSV 629
T D++ +E E + W ER FE + F M ++G R++ W GS++DSV
Sbjct: 178 TEWDRSDSESFEGFDIGNGPEWDTERRTFENYVDIFIDEMFALIGPRKYSRWGGSLIDSV 237
Query: 630 VGVYLTQNVSDNLS-----------SSAYMSLAARFPLKSTNDHTPSDENLRTTASLE 676
VG +LTQN +DNLS S A+M+LAA+FP K D+N+ + +L+
Sbjct: 238 VGTFLTQNSADNLSSYIFHSLSMENSQAFMNLAAKFPPKKRKKLDGDDKNMNSNEALD 295
>gi|413936930|gb|AFW71481.1| hypothetical protein ZEAMMB73_696780 [Zea mays]
Length = 650
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/531 (41%), Positives = 295/531 (55%), Gaps = 64/531 (12%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDK 1055
D VDWE+V A SE+A I RGQ NI+A RI FL+ + + GS DL+WLR V +K
Sbjct: 148 DVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFLDHVKKAQDGSFDLDWLRFVSREK 207
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
K++LL I G+G+KS +C+ LLSL+H AFPVDVNV RI RLGWV LQPL G HL+
Sbjct: 208 AKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVARIVTRLGWVKLQPLNG-ADFHLID 266
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
YP++D +Q YLWPRLC +D++ LYELH MITFGK+ C+K++PNCGACP CK++ S
Sbjct: 267 LYPILDDVQRYLWPRLCTIDKEKLYELHCLMITFGKVVCRKKNPNCGACPFSASCKYYNS 326
Query: 1176 AVASARFALPGPSEKG---IVTSEFGNGIGQSPPLVVNPIPV--IRIEADPVSESGYQIN 1230
++A LP E+G +G+ S + I + E P I+
Sbjct: 327 SLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSSQQMYRYQIAISSTTTETPP-------IH 379
Query: 1231 NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKV 1290
+CEPI+E P SP + +E+P + D + DIE+ + E + NK
Sbjct: 380 SCEPIVEMPPSPEYEYNETPNEQEDFYEDYACDIEDFAPGVQYDSEIN------ICSNKH 433
Query: 1291 MLQDSSA-------LVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDP 1343
L ++S L + + + ++KLK LRTEH+ YVLPD H +L F+ R P
Sbjct: 434 TLNNNSWTPNCGKDLAVINPKCSFGQSKKLKNTGRLRTEHNAYVLPDGHVILEEFEDRVP 493
Query: 1344 DDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILI 1403
D PYLL + + P D K V+GT+LI
Sbjct: 494 GDRCPYLLVV---------ISCPD------DYK--------------------VKGTVLI 518
Query: 1404 PCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNA 1463
PCRTANRG+FPLNGTYFQ NEVFAD+ +S +PI VPR I L R IV FGSS ++
Sbjct: 519 PCRTANRGKFPLNGTYFQENEVFADYSSSRNPITVPRECIGMLERSIVYFGSSIHSITKG 578
Query: 1464 LDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK--KEAGSKRSR 1512
+ IQE G++CVR F R+ R P L + LH + +K +E KR+R
Sbjct: 579 QTRQDIQECLKEGYICVRSFHRKTRIPLRLCSTLHATNTKPAREKPMKRTR 629
>gi|293331251|ref|NP_001168988.1| uncharacterized protein LOC100382817 [Zea mays]
gi|223974285|gb|ACN31330.1| unknown [Zea mays]
Length = 650
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/531 (41%), Positives = 294/531 (55%), Gaps = 64/531 (12%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDK 1055
D VDWE+V A SE+A I RGQ NI+A RI FL+ + + GS DL+WLR V +K
Sbjct: 148 DVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFLDHVKKAQDGSFDLDWLRFVSREK 207
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
K++LL I G+G+KS +C+ LLSL+H AFPVDVNV RI RLGWV LQPL G HL+
Sbjct: 208 AKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVARIVTRLGWVKLQPLNG-ADFHLID 266
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
YP++D +Q YLWPRLC +D++ LYE H MITFGK+ C+K++PNCGACP CK++ S
Sbjct: 267 LYPILDDVQRYLWPRLCTIDKEKLYEPHCLMITFGKVVCRKKNPNCGACPFSASCKYYNS 326
Query: 1176 AVASARFALPGPSEKG---IVTSEFGNGIGQSPPLVVNPIPV--IRIEADPVSESGYQIN 1230
++A LP E+G +G+ S + I + E P I+
Sbjct: 327 SLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSSQQMYRYQIAISSTTTETPP-------IH 379
Query: 1231 NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKV 1290
+CEPI+E P SP + +E+P + D + DIE+ + E + NK
Sbjct: 380 SCEPIVEMPPSPEYEYNETPNEQEDFYEDYACDIEDFAPGVQYDSEIN------ICSNKH 433
Query: 1291 MLQDSSA-------LVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDP 1343
L ++S L + + + ++KLK LRTEH+ YVLPD H +L F+ R P
Sbjct: 434 TLNNNSWTPNCGKDLAVINPKCSFGQSKKLKNTGRLRTEHNAYVLPDGHVILEEFEDRVP 493
Query: 1344 DDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILI 1403
D PYLL + + P D K V+GT+LI
Sbjct: 494 GDRCPYLLVV---------ISCPD------DYK--------------------VKGTVLI 518
Query: 1404 PCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNA 1463
PCRTANRG+FPLNGTYFQ NEVFAD+ +S +PI VPR I L R IV FGSS ++
Sbjct: 519 PCRTANRGKFPLNGTYFQENEVFADYSSSRNPITVPRECIGMLERSIVYFGSSIHSITKG 578
Query: 1464 LDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK--KEAGSKRSR 1512
+ IQE G++CVR F R+ R P L + LH + +K +E KR+R
Sbjct: 579 QTRQDIQECLKEGYICVRSFHRKTRIPLRLCSTLHATNTKPAREKPMKRTR 629
>gi|383100759|emb|CCG47990.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 367 bits (943), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 227/538 (42%), Positives = 302/538 (56%), Gaps = 43/538 (7%)
Query: 978 WDLLRR-IYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ Y G + D V+WEAV+ A ++A I RGQ ++A RI+ FL
Sbjct: 431 WDKLRKEAYGKGYDNGSKTRITDKVNWEAVQKASFVDVAKCIAGRGQHYLLALRIQAFLT 490
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WLR +P + K+YLL I GLG KSV+C+RLLSL+H AFPVDVNV RI
Sbjct: 491 RIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 550
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL WV LQ + H L YP+M +Q YLWPRLC +D++ LYELH MITFGK+ C
Sbjct: 551 TRLQWVELQCCSEEFHSVDL--YPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVIC 608
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K PNC ACP RG+C+++ S + R LP P+E+ + E I S L+ N +
Sbjct: 609 TKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSCM 665
Query: 1215 IRIEADPVSESGYQIN-NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEI-PTLRL 1272
+ + +G Q + +CEPIIE P SP + E E ++D + DIE+I P +
Sbjct: 666 PSHQIEESRTAGRQPSRSCEPIIEVPPSPEYEYEALDEQEYPNED-DLVDIEDIMPGVHY 724
Query: 1273 Q-EREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDA 1331
E N P M N + +AL+ + +RK+K LRTEH YVLPD
Sbjct: 725 DVEINLCSNKP--MVSNCSWTPNHGKDLALSNSQHT--SRKMKHIGRLRTEHLAYVLPDD 780
Query: 1332 HELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCE 1391
H LL F+ R P+DPSPYLL + ++P E C
Sbjct: 781 HPLLEEFEERVPEDPSPYLLVLHPCPDNPPPGA---------------VENC-------- 817
Query: 1392 RNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIV 1451
+V+GTILIPCRTA+RG FPLNGTYFQ +EVFAD +S PI+ + +L + IV
Sbjct: 818 ----MVKGTILIPCRTASRGNFPLNGTYFQDHEVFADDSSSRLPIDFSSECLNDLGKCIV 873
Query: 1452 CFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSK 1509
FGSS ++ + I++ + +G+VC+RGFDRR R PR L LH KKE SK
Sbjct: 874 YFGSSIHSITKGQTRQDIEDCYKKGYVCIRGFDRRTRSPRRLCAALHSINEKKEDNSK 931
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 18/144 (12%)
Query: 526 AVVPYQVGPSSE--------HGALVPHQIKEKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
AVVPYQ ++ G L PH +++P+V+ LD TLR+ ++ ++
Sbjct: 211 AVVPYQNAAPTDASCSALVPFGGLGPHG--NHSNQVRPKVLGLDVETLRVCGVLTKWEE- 267
Query: 577 TTKDQTSNEDME----KWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGV 632
D S E ++ W + R ++ + SF A + + G R + W GSV+DSVVG
Sbjct: 268 --IDSESFEGVDIGSGPGWAETRRDYKKLVDSFIATVKDLFGLREYSRWGGSVIDSVVGT 325
Query: 633 YLTQNVSDNLSSSAYMSLAARFPL 656
+LTQNV+D+LSS+A+M LAA+FPL
Sbjct: 326 FLTQNVADHLSSNAFMILAAKFPL 349
>gi|357142346|ref|XP_003572541.1| PREDICTED: protein ROS1-like [Brachypodium distachyon]
Length = 992
Score = 363 bits (933), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 223/556 (40%), Positives = 300/556 (53%), Gaps = 73/556 (13%)
Query: 978 WDLLR--RIYSTGEERSHDKM-DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR + RS ++ D VDWEAV A E+A I RGQ ++A RI+ FL
Sbjct: 476 WDRLRGEACRKGYDNRSETRITDKVDWEAVLHAPLIEVAKCIAGRGQHYLLALRIQAFLA 535
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WL+ VP + K YLL + GLG KSV+C+RLLSL+ AFPVDVNV RI
Sbjct: 536 RIKKDHGSFDLDWLKYVPRESAKNYLLSVNGLGAKSVDCIRLLSLKQKAFPVDVNVSRIV 595
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL WV L+ P + HL+ YP+M IQ YLWPRLC + ++ LYELH MITFGK+ C
Sbjct: 596 TRLEWVELECSPEEF--HLVDLYPLMKDIQTYLWPRLCTIGKEKLYELHCLMITFGKVIC 653
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS-----ARFALPGPSEK--GIVTSE---FGNGIGQS 1204
K +PNC ACP R C+++ S +A A ++ GP E+ +VTSE NG
Sbjct: 654 TKAAPNCKACPFRARCRYYKSNLARSLLPPAEESVHGPGEEQTSMVTSERLLLPNGSCTP 713
Query: 1205 PPLVVNPIPVIRIEADPVSESGYQ----INNCEPIIEEPRSPGPQCSESPESEIDDDDFS 1260
LV + + ES NCEPIIE P P P+C E E D+
Sbjct: 714 GHLVCQ---------NQIKESKTAGRVPTRNCEPIIEVP--PSPEC----EHEALDEQEQ 758
Query: 1261 IGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCA 1317
DIE++ + ++ + K N ++ M + LV + S + KLK
Sbjct: 759 CLDIEDMMS-DGEQYDAKINLCSYKPMVSIGCWTPNRGKDLVLSNSHHTSYQSPKLKNPG 817
Query: 1318 HLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKL 1377
LRTEHH YVLPD H +L F++R P+DP PYLL + + P
Sbjct: 818 RLRTEHHAYVLPDDHVILEEFEKRVPEDPCPYLLVV---------IPCP----------- 857
Query: 1378 CNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPIN 1437
+ +V+GT+LIPCRTA+RG FPLNGTYFQ +EVFAD+ +S PI
Sbjct: 858 ---------------DDEVVKGTMLIPCRTASRGNFPLNGTYFQDHEVFADYTSSRFPIT 902
Query: 1438 VPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRL 1497
+ R I L R IV FGSS ++ + I++ F +G+VC+R FDR+ R P+ L L
Sbjct: 903 IHRELIWELERCIVYFGSSIHSITKGQTRQDIEDCFKKGYVCIRAFDRQTRYPKRLCATL 962
Query: 1498 HCSPSKKEAGSKRSRD 1513
H + K+E ++ D
Sbjct: 963 HANTGKQEGSEQKEGD 978
Score = 87.0 bits (214), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 20/147 (13%)
Query: 526 AVVPYQVGP------------SSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNI 573
A+VPYQ P +S A+VP+ + K+ + K + + P T R+++++M
Sbjct: 219 AMVPYQNAPIDSPCSALVPFGNSAQLAMVPYLNRGKKVRAK-LLGITPETKRVYDVLMKW 277
Query: 574 DDGTTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSV 629
D+ D S E ++ W K R ++ + SF A + + G R F W GSV+DSV
Sbjct: 278 DE---IDGESFEGLDIGSGPEWDKIRLEYKKHVDSFIAIVKDLFGPREFSQWGGSVIDSV 334
Query: 630 VGVYLTQNVSDNLSSSAYMSLAARFPL 656
VG +LTQNV+D+LSS+A+M LAA+FP+
Sbjct: 335 VGTFLTQNVADHLSSNAFMVLAAKFPM 361
>gi|300681535|emb|CBH32632.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 224/537 (41%), Positives = 300/537 (55%), Gaps = 39/537 (7%)
Query: 978 WDLLR-RIYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR Y G + D V+WEAV+ A ++A I RGQ ++A RI+ FL
Sbjct: 431 WDKLRDEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLT 490
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WLR +P + K+YLL I GLG KSV+C+RLLSL+H AFPVDVNV RI
Sbjct: 491 RIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 550
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL WV LQ + H L YP+M +Q YLWPRLC +D++ LYELH MITFGK+ C
Sbjct: 551 TRLQWVELQCCSEEFHSVDL--YPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVIC 608
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 1214
K PNC ACP RG+C+++ S + R LP P+E+ + E I S L+ N +
Sbjct: 609 TKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSSI 665
Query: 1215 IRIEADPVSESGYQIN-NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 1273
+ + +G Q + +CEPIIE P SP + E E ++D + DIE+I +
Sbjct: 666 PSHQIEESRTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNED-DLVDIEDIMSGVHY 724
Query: 1274 EREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHE 1333
+ E N + +AL+ + +RK+K LRTEH YVLPD H
Sbjct: 725 DVEINLCSNKPTVSNCSWTPNRGKDLALSNSQHT--SRKMKHIGRLRTEHLAYVLPDGHP 782
Query: 1334 LLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERN 1393
LL F+ R P+DPSPYLL + ++P G+ Q +C
Sbjct: 783 LLEEFEERVPEDPSPYLLVLHPCPDNPPP-GAVQ-----------------NC------- 817
Query: 1394 AGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCF 1453
+V+GTILIPCRTA+ G FPLNGTYFQ +EVFAD +S PI + +L + IV F
Sbjct: 818 --MVKGTILIPCRTASTGNFPLNGTYFQDHEVFADDSSSRLPIVFSSECLNDLGKCIVYF 875
Query: 1454 GSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKR 1510
GSS ++ + I++ + +G+VC+RGFDRR R PR L LH KKE GSK
Sbjct: 876 GSSIHSITKGQTRQDIEDCYKKGYVCIRGFDRRTRSPRRLRAALHSINEKKEDGSKH 932
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 18/144 (12%)
Query: 526 AVVPYQVGPSSE--------HGALVPHQIKEKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
A+VPYQ ++ G L H +++P+V+ LD TLR+ ++ ++
Sbjct: 211 AIVPYQNAAPTDASCSTLVPFGGLGGH--GNHSNQVRPKVLGLDVETLRVCGVLTKWEE- 267
Query: 577 TTKDQTSNEDME----KWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGV 632
D S E ++ W + R ++ R+ F A + + G R + W GSV+DSVVG
Sbjct: 268 --IDSESFEGVDIGSGPGWNETRRDYKKRVDWFIATVKDLFGPREYSRWGGSVIDSVVGT 325
Query: 633 YLTQNVSDNLSSSAYMSLAARFPL 656
+LTQNV+D+LSS+A+M LAA+FP+
Sbjct: 326 FLTQNVADHLSSNAFMILAAKFPM 349
>gi|52353713|gb|AAU44279.1| unknow protein [Oryza sativa Japonica Group]
Length = 375
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 238/379 (62%), Gaps = 17/379 (4%)
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE----FGNGI 1201
MITFGK+FC K PNC ACP+R EC+HFASA ASAR ALP P +K +V F NG
Sbjct: 1 MITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLSNQFAFHNGT 60
Query: 1202 GQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSI 1261
+P N P+ ++E + NN PIIEEP SP + D +DF
Sbjct: 61 MPTP----NSTPLPQLEGS-IHARDVHANNTNPIIEEPASPREEECRELLEN-DIEDFD- 113
Query: 1262 GDIEEIPTLRLQEREFKENFPNFM-EMNKVMLQD--SSALVALTAEAASVPTRKLKRCAH 1318
D +EIP ++L F +N N + E NK D + ALVA++ EAAS+P KLK
Sbjct: 114 EDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHR 173
Query: 1319 LRTEHHVYVLPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK-DS 1375
LRTEH+VY LPD+H L++ D+R+PDDPSPYLLAIW+P E ++ +P+ CN + +
Sbjct: 174 LRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEG 233
Query: 1376 KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHP 1435
LC++E+C++C S E VRGT+L+PCRTA RG FPLNGTYFQVNEVFADH +SH+P
Sbjct: 234 GLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNP 293
Query: 1436 INVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVN 1495
IN+PR + NL R +V FG+S T+F L +IQ FWRGFVCVRGF+ R PRPL
Sbjct: 294 INIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCP 353
Query: 1496 RLHCSPSKKEAGSKRSRDE 1514
H + SK SK++ E
Sbjct: 354 HFHLAASKLRRSSKKAATE 372
>gi|168003630|ref|XP_001754515.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694136|gb|EDQ80485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 413
Score = 338 bits (867), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/418 (46%), Positives = 246/418 (58%), Gaps = 26/418 (6%)
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LGWVPL+PLP +L +HLL+ YPV IQ YLWPRLC LD +TLYELHYQMI+FGK+FC K
Sbjct: 1 LGWVPLEPLPEELQLHLLELYPVQATIQKYLWPRLCKLDHQTLYELHYQMISFGKVFCTK 60
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP+R ECKHFASAV+SA+ ALP P P L + P +
Sbjct: 61 SKPNCNACPMRPECKHFASAVSSAKLALPAPERP-----------HDRPTLALPPGTISS 109
Query: 1217 IEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQERE 1276
D + C+P +EEP +P + + +I+D FS+ ++EE + L +
Sbjct: 110 SGEDYLRPPRTVSQYCQPFVEEPMTPESEANVEDLDDIEDYPFSVEEVEEDAVMNLYQES 169
Query: 1277 FKENFPNFM--EMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHEL 1334
M + N S +V + EAAS+P KLK LRT H+VY LPD H L
Sbjct: 170 PSTVTEQSMSGDANPNGSSGSQEMVLVPLEAASIPVPKLKNVGRLRTVHYVYELPDNHPL 229
Query: 1335 LRGFDRRDPDDPSPYLLAIWSP--------GESPNSVGS-PQYRCNSKDSKLCNSEICYS 1385
L G D R+PDDP YLLAIWSP SVG P+ N D+ N E ++
Sbjct: 230 LDGLDSREPDDPCTYLLAIWSPVTRLVLIVAYLELSVGKVPESIPNINDNA--NEENPFA 287
Query: 1386 CNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIAN 1445
+S E + I + T+L+PCRTA +G FPLNGTYFQVNEVFADH +S PI VPR + N
Sbjct: 288 -SSGSEGDESI-KATLLVPCRTAMQGSFPLNGTYFQVNEVFADHASSLQPILVPRTLLWN 345
Query: 1446 LRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
LRR V FG+S T++F + +IQ FWRG+VCVRGFDR R P+PLV RLH K
Sbjct: 346 LRRRFVFFGTSVTSIFRGMTAEEIQACFWRGYVCVRGFDRTTRAPKPLVGRLHLQAGK 403
>gi|413945496|gb|AFW78145.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 565
Score = 299 bits (765), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 162/205 (79%), Gaps = 6/205 (2%)
Query: 963 KTTPKKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKER 1019
+TT KN++N DW+ LRR S G+ +RS ++ DS+DWEAVRCAD I+ AI+ER
Sbjct: 355 RTTTAKNTENF---DWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCADVRRISHAIRER 411
Query: 1020 GQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 1079
G N++A RI+ FLNRLV HGSIDLEWLR +PPD K+YLL I GLGLKSVECVRLL+L
Sbjct: 412 GMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLGLKSVECVRLLTL 471
Query: 1080 QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTL 1139
H+AFPVD NVGRI VRLGWVP+QPLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TL
Sbjct: 472 HHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYLWPRLCKLDQQTL 531
Query: 1140 YELHYQMITFGKIFCKKRSPNCGAC 1164
YELHYQMITFGK+FC KR PNC AC
Sbjct: 532 YELHYQMITFGKVFCTKRQPNCNAC 556
>gi|357445859|ref|XP_003593207.1| Repressor of silencing [Medicago truncatula]
gi|355482255|gb|AES63458.1| Repressor of silencing [Medicago truncatula]
Length = 731
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 130/204 (63%), Positives = 165/204 (80%), Gaps = 1/204 (0%)
Query: 975 QQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
+Q W+ LR+I+S + R D +DS+DWEAVR A E+A+AIK RGQ NIIA +I+ LN
Sbjct: 485 RQKWEALRKIHSRSD-RHIDHVDSIDWEAVRNAKVGEVAEAIKMRGQHNIIAKKIQLALN 543
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+ +E HG+ DLEWL+ +PP++ KEYLL+I GLGLKSVEC+RLL+LQHI+FPVDVNVGRI
Sbjct: 544 KFLEHHGTTDLEWLKYIPPNEAKEYLLNIFGLGLKSVECLRLLTLQHISFPVDVNVGRIV 603
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VRLGWVPLQPLP + IH L+++P KIQ YLWPRLC LD TLYELHYQ+ITFGK+FC
Sbjct: 604 VRLGWVPLQPLPESIQIHNLEQFPDPIKIQQYLWPRLCKLDHHTLYELHYQLITFGKVFC 663
Query: 1155 KKRSPNCGACPLRGECKHFASAVA 1178
KR+PNC ACP++ CK++AS++A
Sbjct: 664 TKRNPNCNACPMKDNCKYYASSLA 687
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 14/166 (8%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVF 598
G LV ++ R LK V D TLR+WNL++ + KD E ++W++ R+ +
Sbjct: 294 GELVLYE----RPLLKVNVKFDEETLRVWNLLVAENKHDEKD----EHKRRYWEEIRKAY 345
Query: 599 EGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
++SF R+H + GDRRF PWKGSV+DS+ GV+LTQNVSD+LSSSA+MSLAARFP+KS
Sbjct: 346 HEAVESFLTRVHNVQGDRRFLPWKGSVLDSIGGVFLTQNVSDHLSSSAFMSLAARFPVKS 405
Query: 659 -----TNDHTPSD-ENLRTTASLEPIGSNSTSNGAVYDSEGNMYFV 698
+N+ SD ++ + +E +N +S +++ + Y +
Sbjct: 406 VSCEQSNNMIFSDPKSDKKVEEMEAQKANESSKVVNKETQNSSYLI 451
>gi|224068973|ref|XP_002326244.1| DNA glycosylase [Populus trichocarpa]
gi|222833437|gb|EEE71914.1| DNA glycosylase [Populus trichocarpa]
Length = 257
Score = 282 bits (722), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 142/251 (56%), Positives = 179/251 (71%), Gaps = 5/251 (1%)
Query: 1257 DDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKL 1313
+D D +EIP ++L EF +N N+M+ N + LQ+ S ALVALTAEAAS+P KL
Sbjct: 2 EDTFCEDPDEIPIIKLNIEEFTQNLQNYMQEN-MELQEADMSKALVALTAEAASIPVPKL 60
Query: 1314 KRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK 1373
K + LRTEH VY LPD+H LL+ DRR+PDDP YLLAIW+PGE+ NS+ + C+
Sbjct: 61 KNVSRLRTEHQVYELPDSHPLLQRLDRREPDDPCSYLLAIWTPGETANSIQPLERSCSLH 120
Query: 1374 D-SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
+ KLC+ + C+SCN++ E N+ IVRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S
Sbjct: 121 ECGKLCDEKTCFSCNNIREENSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 180
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
+PI+VPR I NL R V FG+S T+F L IQ FWRG+VCVRGFD++ R PRP
Sbjct: 181 LNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLTTAGIQHCFWRGYVCVRGFDQKTRAPRP 240
Query: 1493 LVNRLHCSPSK 1503
L+ RLH SK
Sbjct: 241 LMARLHFPASK 251
>gi|300681534|emb|CBH32631.1| conserved hypothetical protein [Triticum aestivum]
Length = 840
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 166/382 (43%), Positives = 219/382 (57%), Gaps = 16/382 (4%)
Query: 978 WDLLR-RIYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR Y G + D V+WEAV+ A ++A I RGQ ++A RI+ FL
Sbjct: 431 WDKLRDEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLT 490
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WLR +P + K+YLL I GLG KSV+C+RLLSL+H AFPVDVNV RI
Sbjct: 491 RIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 550
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL WV LQ + H L YP+M +Q YLWPRLC +D++ LYELH MITFGK+ C
Sbjct: 551 TRLQWVELQCCSEEFHSVDL--YPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVIC 608
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVN--PI 1212
K PNC ACP RG+C+++ S + R LP P+E+ + E I S L+ N I
Sbjct: 609 TKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSSI 665
Query: 1213 PVIRIEADPVSESGYQIN-NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLR 1271
P +IE +G Q + +CEPIIE P SP + E E ++D + DIE+I +
Sbjct: 666 PSHQIEES--RTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNED-DLVDIEDIMSGV 722
Query: 1272 LQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDA 1331
+ E N + +AL+ + +RK+K LRTEH YVLPD
Sbjct: 723 HYDVEINLCSNKPTVSNCSWTPNRGKDLALSNSQHT--SRKMKHIGRLRTEHLAYVLPDG 780
Query: 1332 HELLRGFDRRDPDDPSPYLLAI 1353
H LL F+ R P+DPSPYLL +
Sbjct: 781 HPLLEEFEERVPEDPSPYLLVL 802
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 18/144 (12%)
Query: 526 AVVPYQVGPSSE--------HGALVPHQIKEKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
A+VPYQ ++ G L H +++P+V+ LD TLR+ ++ ++
Sbjct: 211 AIVPYQNAAPTDASCSTLVPFGGLGGH--GNHSNQVRPKVLGLDVETLRVCGVLTKWEE- 267
Query: 577 TTKDQTSNEDME----KWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGV 632
D S E ++ W + R ++ R+ F A + + G R + W GSV+DSVVG
Sbjct: 268 --IDSESFEGVDIGSGPGWNETRRDYKKRVDWFIATVKDLFGPREYSRWGGSVIDSVVGT 325
Query: 633 YLTQNVSDNLSSSAYMSLAARFPL 656
+LTQNV+D+LSS+A+M LAA+FP+
Sbjct: 326 FLTQNVADHLSSNAFMILAAKFPM 349
>gi|7406462|emb|CAB85564.1| putative protein [Arabidopsis thaliana]
Length = 234
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Query: 1295 SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIW 1354
S ALVAL S+PT KLK + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW
Sbjct: 19 SKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIW 78
Query: 1355 SPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRF 1413
+PGE+ NS P+ +C K S K+C E C CNS+ E N+ VRGT+LIPCRTA RG F
Sbjct: 79 TPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSF 138
Query: 1414 PLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYF 1473
PLNGTYFQVNE+FADHE+S PI+VPR I +L R V FG+S T++F L QIQ F
Sbjct: 139 PLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCF 198
Query: 1474 WRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1503
W+GFVCVRGF+++ R PRPL+ RLH SK
Sbjct: 199 WKGFVCVRGFEQKTRAPRPLMARLHFPASK 228
>gi|31296708|gb|AAP46637.1| PG3 [Hordeum vulgare]
Length = 689
Score = 256 bits (655), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 220/389 (56%), Gaps = 23/389 (5%)
Query: 978 WDLLRR-IYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR Y G + D V+WEAV+ A ++A I RGQ ++A RI+ FL
Sbjct: 251 WDKLREEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLT 310
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WLR +P + K+YL+ I GLG KSV+C+RLLSL+H AFPVDVNV RI
Sbjct: 311 RIKKDHGSFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVPRIV 370
Query: 1095 VRLGWVPLQPLPGDLH-IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
RL WV LQ + H + L + P KI LWPRLC +D++ LYELH MITFGK+
Sbjct: 371 TRLQWVELQCCSEEFHSVDLYQLMPGCGKIT--LWPRLCTIDKEKLYELHCLMITFGKVI 428
Query: 1154 CKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNP-- 1211
C K PNC ACP RG+C+++ S + R LP P+E+ + E + S L+ N
Sbjct: 429 CTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKKSMVTSERLLSNGSC 485
Query: 1212 IPVIRIEADPVSES---GYQIN-NCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEI 1267
+P +++ + ES G Q + +CEPIIE P SP + E E ++D + DIE+I
Sbjct: 486 MPSLQVWQHQIEESRAAGRQPSRSCEPIIEVPPSPEYEYEALDEQEYPNED-DLVDIEDI 544
Query: 1268 PTLRLQ---EREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHH 1324
+ R+ E N P M N + AL+ + +R LK LRTEH
Sbjct: 545 MSKRVHYDVEINLCSNKP--MVSNCSWTPNHGKDWALSNSQHT--SRNLKHIGRLRTEHL 600
Query: 1325 VYVLPDAHELLRGFDRRDPDDPSPYLLAI 1353
YVLPD H LL + R P+DPSPYLL +
Sbjct: 601 AYVLPDGHALLEEVEERVPEDPSPYLLVL 629
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 18/144 (12%)
Query: 526 AVVPYQVGPSSEH--------GALVPHQIKEKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
A+VPYQ ++ G L PH + +++P+V+ LD TLR++ + ++
Sbjct: 29 AIVPYQNAAQADASCSALVSLGDLGPH--GNRSNQVRPKVLGLDDDTLRVYGALTKWEE- 85
Query: 577 TTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGV 632
D S E ++ W R +E + F A + + G R + W GSV+DSVVG
Sbjct: 86 --IDSESFEGVDIGSGPKWDDIRRKYENLVDWFIATVKDLFGPREYSRWGGSVIDSVVGT 143
Query: 633 YLTQNVSDNLSSSAYMSLAARFPL 656
+LTQNV+D+LS +A+M LAA+FP+
Sbjct: 144 FLTQNVADHLSRNAFMILAAKFPM 167
>gi|4581149|gb|AAD24633.1| hypothetical protein [Arabidopsis thaliana]
Length = 1207
Score = 256 bits (653), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 180/298 (60%), Gaps = 21/298 (7%)
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSE 1196
K YELHYQMITFGK+FC K PNC ACP++GEC+HFASA ASAR ALP ++E
Sbjct: 921 KAKYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALP--------STE 972
Query: 1197 FGNGIGQSPPLVVN-PIPVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCSESPES 1252
G G PL ++ P P R + V SE ++ CEPIIEEP SP P+ +E +
Sbjct: 973 KGMGTPDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIA 1032
Query: 1253 EIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVP 1309
+I++ F D EEIPT+RL F N ME NK LQD SSALVALTAE AS+P
Sbjct: 1033 DIEEAFFE--DPEEIPTIRLNMDAFTSNLKKIMEHNK-ELQDGNMSSALVALTAETASLP 1089
Query: 1310 TRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYR 1369
KLK + LRTEH VY LPD H LL ++R+PDDP YLLAIW+PGE+ +S+
Sbjct: 1090 MPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVST 1149
Query: 1370 C-NSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVF 1426
C + LC+ E C+SCNS+ E + IVRGTIL+ R R +F ++ F
Sbjct: 1150 CIFQANGMLCDEETCFSCNSIKETRSQIVRGTILV--YQLRRYRLAFGKVHFVLSSFF 1205
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 93/136 (68%), Gaps = 7/136 (5%)
Query: 526 AVVPYQVGP-----SSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKD 580
A+VPY + GA+VP K+ + +P+V LD T R+W L++ + D
Sbjct: 466 ALVPYTMNSQIVLFGGGAGAIVP-VTPVKKPRPRPKVDLDDETDRVWKLLLENINSEGVD 524
Query: 581 QTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSD 640
S+E KWW++ER VF GR SF ARMHL+ GDRRF PWKGSVVDSVVGV+LTQNVSD
Sbjct: 525 -GSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWKGSVVDSVVGVFLTQNVSD 583
Query: 641 NLSSSAYMSLAARFPL 656
+LSSSA+MSLA++FP+
Sbjct: 584 HLSSSAFMSLASQFPV 599
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 14/112 (12%)
Query: 977 DWDLLRR---IYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKE-- 1031
DWD LRR + E++ MD+VDW+A+R AD E+A+ IK RG + +A RI+
Sbjct: 830 DWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQYLT 889
Query: 1032 --------FLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
FL+RLV HGSIDLEWLR+VPPDK K Y L + + V C +
Sbjct: 890 LNMKIMQGFLDRLVNDHGSIDLEWLRDVPPDKAK-YELHYQMITFGKVFCTK 940
>gi|413925772|gb|AFW65704.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1522
Score = 251 bits (640), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 180/276 (65%), Gaps = 16/276 (5%)
Query: 868 LFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRT 927
L C + YT T G + S SG +D R ++S ++ + S L N+ S
Sbjct: 1259 LVCSNPQEVYTTSTD-QMGAEQSQSGCGQKYNDARVQTAS--HERHQSSTLCDNQNSCSV 1315
Query: 928 GMPQ-AHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR-IY 985
+ A D+T + +G K+++ S K + PKK +D DWD LR+ +
Sbjct: 1316 VLQGVASDSTQKFVDTQKGPSKARQNGSKAK----VRGRPKKKTD-----DWDSLRKKVL 1366
Query: 986 STG--EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI 1043
S G ++RSHD D+VDWEAVR A+ EI++ I+ERG N++A RIKEFLNRLV HGSI
Sbjct: 1367 SNGGDKQRSHDARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGSI 1426
Query: 1044 DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
DLEWLR+V PDK K++LL I GLGLKSVECVRLL+L H+AFPVD NVGRI VRLGWVPLQ
Sbjct: 1427 DLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQ 1486
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTL 1139
PLP L +HLL+ YP+++ IQ YLWPRLC LDQ+TL
Sbjct: 1487 PLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTL 1522
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 20/167 (11%)
Query: 494 IIRKFKDLTIRD---GGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKR 550
II K K LTI G S++P NA+VPY+ E AL+ + K K+
Sbjct: 799 IIEKIKLLTINGPDKGVSEVP------------KNALVPYE----GEFSALIAFEGKAKK 842
Query: 551 KKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMH 610
+ + +V +DP T MWNL+M D G + ++D EKW +ER VF GR+ SF ARMH
Sbjct: 843 SRPRAKVNIDPVTTMMWNLLMGPDMGDDAEGL-DKDKEKWLDEERRVFRGRVDSFIARMH 901
Query: 611 LILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK 657
L+ GDRRF WKGSVVDSVVGV+LTQNVSD+LSSSA+M++AA+FP+K
Sbjct: 902 LVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMAVAAKFPVK 948
>gi|224138760|ref|XP_002326683.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
gi|222834005|gb|EEE72482.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
Length = 210
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 147/211 (69%), Gaps = 2/211 (0%)
Query: 1295 SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIW 1354
S ALV++ S P K+KR LRTEH VY LPD HE+L G D+R+ DD PYLLAIW
Sbjct: 2 SQALVSVGTTPLSAP--KMKRVTSLRTEHQVYELPDNHEILVGLDKRERDDSVPYLLAIW 59
Query: 1355 SPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFP 1414
PGE+PNS P+ C+S+ S+LC+ + C++C + E+ AGIVRGTILIPCRTA +G FP
Sbjct: 60 QPGETPNSSQQPEKLCSSQGSQLCDQKTCFACEGIREQQAGIVRGTILIPCRTALKGSFP 119
Query: 1415 LNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFW 1474
LNGTYFQVNEVFADH++S+ PI VPR + NL + + GSS ++F L +++I + FW
Sbjct: 120 LNGTYFQVNEVFADHKSSYDPIIVPRELLWNLVKRTLYVGSSTKSIFRDLSLKEIHQNFW 179
Query: 1475 RGFVCVRGFDRRYRCPRPLVNRLHCSPSKKE 1505
GF CV+ F+R P+PL R HCS SK E
Sbjct: 180 TGFTCVKAFERGTGAPKPLARRFHCSASKME 210
>gi|222628678|gb|EEE60810.1| hypothetical protein OsJ_14411 [Oryza sativa Japonica Group]
Length = 1072
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 183/571 (32%), Positives = 256/571 (44%), Gaps = 131/571 (22%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
KKN + +D R + G R D D VDWEA+ A +++ D IK+RGQ + +A
Sbjct: 268 KKNDTSHWHSLYDEAR---NRGYIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMA 324
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAF-- 1084
RI FL R+ HG+IDLEWLR +P K K+YL + GLG KSV+C+RLLSL+H AF
Sbjct: 325 FRILAFLIRMKRDHGNIDLEWLRFIPRAKAKQYLHSVIGLGHKSVDCIRLLSLRHRAFPA 384
Query: 1085 ----------PVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYL 1134
P+D N+ I RLGWV L+PLP +E+ +DK
Sbjct: 385 SYLFSNQIILPIDTNIAHIVTRLGWVQLRPLPSS------QEFHRVDK------------ 426
Query: 1135 DQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVT 1194
YELH QMITFGK C+K PNCGACP ECK++ S A ALP S++
Sbjct: 427 -----YELHCQMITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATK 481
Query: 1195 SEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSP-----GPQCSES 1249
+ ++ L+ +IE +E +N CEP+IE P +P G E
Sbjct: 482 DANMDDPAKTYDLIFKAHQY-QIEYGKNTE----MNYCEPVIEIPPTPLHENRGETSDED 536
Query: 1250 PES--EIDDDDFSIG----DIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTA 1303
E+ DDD IG D+E+I E + + P ++ ++ +
Sbjct: 537 DENGYYFDDDMEDIGRHDYDMEDIEHDYDMEVDLRSAKPT-TNTSQAGATPGKEMIPINP 595
Query: 1304 EAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSV 1363
A S P + + LRTE+ ++PD H +L+ FD R P D +PYLL S E
Sbjct: 596 RAKSTP---MVKKFSLRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLVFRSFDEH---- 648
Query: 1364 GSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVN 1423
V+ TIL
Sbjct: 649 --------------------------------TVKATIL--------------------- 655
Query: 1424 EVFADHETSHHPINVPRHTIANLRRE--IVCFGSSATTLFNALDMRQIQEYFWRGFVCVR 1481
VFADH +S PI + R + LRR+ IV FG+ ++ +G++C R
Sbjct: 656 -VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVT-------------KGYICTR 701
Query: 1482 GFDRRYRCPRPLVNRLHCSPSKKEAGSKRSR 1512
FDRR + P+ L +H + K+ G KR+R
Sbjct: 702 EFDRRTKFPKQLCVEIHATNVNKDIGKKRAR 732
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 591 WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSL 650
W + R FE ++ F M I+GDR F PW GSVV SVVG +LTQNVSDNLSS+A+M++
Sbjct: 68 WNERRREFERKVDHFMYNMRSIIGDRNFSPWGGSVVTSVVGTFLTQNVSDNLSSNAFMTI 127
Query: 651 AARFPLKSTNDHTPSDENL 669
AARFPLK+ + +N+
Sbjct: 128 AARFPLKNRRNAGHHSDNV 146
>gi|48716531|dbj|BAD23135.1| putative transcriptional activator DEMETER [Oryza sativa Japonica
Group]
Length = 1552
Score = 237 bits (605), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/238 (52%), Positives = 150/238 (63%), Gaps = 38/238 (15%)
Query: 945 GKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRR--IYSTGEERSHDKM-DSVDW 1001
GK K E + +N R + DWD LR+ +++ G + DK D++DW
Sbjct: 1174 GKSKHTEKRPKARNVRGRTKMK--------HYDWDNLRKEVLHNHGNRQRSDKAKDTIDW 1225
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA +FLNRLV HGSIDLEWLR++ PDK K +LL
Sbjct: 1226 EA---------------------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLL 1258
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
I GLGLKS ECVRLL+L +AFPVD NV RI VRLGWVPLQPLP L +HLL+ YP+++
Sbjct: 1259 SIRGLGLKSTECVRLLTLHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLE 1318
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
IQ Y+WPRLC LDQ LYELHYQMITFGK+FC K PNC +CP+R ECKHFASA AS
Sbjct: 1319 HIQKYIWPRLCKLDQLILYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFAS 1376
Score = 146 bits (369), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 110/189 (58%), Gaps = 30/189 (15%)
Query: 1244 PQCSESP---ESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQD---SSA 1297
P C+ P E + F+ D +EIP + L EF +N +++ N + ++D S+A
Sbjct: 1356 PNCNSCPMRAECKHFASAFASEDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNA 1415
Query: 1298 LVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSP- 1356
LVA++ +AASVPT KLK LRTEH VY LPD+H LL GFD+R+PDDPSPYLL+IW+P
Sbjct: 1416 LVAISPQAASVPTSKLKNVNRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPG 1475
Query: 1357 ----------------------GESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERN 1393
GE+ S +P+ CNSK++ KLC S C+SCNS E
Sbjct: 1476 KLMCSHPTFTLIQVILMIKISTGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQ 1535
Query: 1394 AGIVRGTIL 1402
+ VRGT+L
Sbjct: 1536 SQKVRGTLL 1544
Score = 142 bits (359), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 539 GALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVF 598
GALVP + K K++ + EV +DP T MWNL+M +D + +ED E+ ++ER +F
Sbjct: 745 GALVPLEGKVKKRGSRAEVKIDPVTNLMWNLLMALDKCEGVEGI-DEDKERLLEEERRMF 803
Query: 599 EGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKS 658
GRI SF A MHL+ GDRRF PWKGS+VDSVV V+LTQNVSD+LSSSA+M+LAARFP+KS
Sbjct: 804 RGRIDSFIAHMHLVQGDRRFSPWKGSIVDSVVDVFLTQNVSDHLSSSAFMALAARFPVKS 863
Query: 659 TNDHTPS 665
P+
Sbjct: 864 EGPEKPA 870
>gi|168050578|ref|XP_001777735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670836|gb|EDQ57397.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1992
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 193/661 (29%), Positives = 296/661 (44%), Gaps = 134/661 (20%)
Query: 541 LVPHQIKEKRKKLKPEVVLDPGTLRMWN-LIMNIDDGTTKDQTSNEDMEKWWQKEREVFE 599
+V ++ + K KP+V LD T++ + L++ + + D+T W ++R+++
Sbjct: 901 MVSYRGMRPKVKCKPKVFLDEVTIKTFERLLLQGGEASDADRTDEN-----WAEQRQLWG 955
Query: 600 GRIQSFTARMHLI-------------------LGDRRFKPWKGSVVDSVVGVYLTQNVSD 640
GR SF A M + GDR F W GSV+DSVVGV+LTQNVSD
Sbjct: 956 GRAHSFNAVMRDVQGWNPDVVVCVLCWTCPGDAGDRTFSKWGGSVLDSVVGVFLTQNVSD 1015
Query: 641 NLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYF--- 697
LSS+A+M L ARFP + ++T+ V E ++
Sbjct: 1016 FLSSNAFMELCARFP----------------------VRRDATTGSCVASKEQSLLSKEM 1053
Query: 698 -----VTEPEPDRCCELKDRDDA----FDSRIQRKALQENGDIKVMTDAVPSQAFDT--- 745
V P+P L R + D Q+ A ++ +V+T+ ++ DT
Sbjct: 1054 SRECPVETPDPYLTRALHPRAEGSAAGIDELQQKTAGAQDDSGQVITEVCVAETPDTLLK 1113
Query: 746 SSVQSLDRTQLFPT---GNSKADVASSTKTSNAESFITQFSHT----------------- 785
++ D PT G+ D++ S+ I S +
Sbjct: 1114 KPQEAKDILVDLPTRDDGHRDLDISDPYSLSDGHGGIEALSRSIAIDNLAVALETVHIQS 1173
Query: 786 --------GNLKKNSVNQLFPT--VNSKADVAS-----------PSQNHITQSSVTQFWP 824
+K + N P V AD AS P N + +S T+
Sbjct: 1174 SAVPKDCCSFMKMTTTNVRAPDEHVTDDADYASRPQATKIVSEMPGDNRVQESIGTEAGT 1233
Query: 825 TGNSTADVA----SPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKP 880
G T DV S + C+ + + T P ++LQDK L D D K
Sbjct: 1234 QG-PTQDVGEKRHSSEQGCLVGNDEKSDTRKPFSRGYSVLQDKFKLSLEEDLTPDRSEK- 1291
Query: 881 TRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDATTTSK 940
+T+ R+ L + ++ +P +I R ++ H + + K
Sbjct: 1292 -------LLATALRHILGKSITAREAAVVKEPLKIE----KRRKLKSSKNARHVSKISVK 1340
Query: 941 KSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLR-RIYSTGEERSHDKMDSV 999
+ G+ + E+ + K + KTT W+ LR ++ S E+ + DSV
Sbjct: 1341 ELTGGQRATYEHGFNYKLNAEMKTT------------WEALRAKVLSDNFEKDYSISDSV 1388
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKE 1058
DWEAVR AD + +AD IKERG NI++GRIK L+R+ + GS+DLEW+R + P +
Sbjct: 1389 DWEAVRLADVAVVADLIKERGMNNILSGRIKSLLDRIYRDQDGSLDLEWIRKLSPIDSQN 1448
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L+++ GLG+KSVEC+RLL+L H +FPVD NVGRI VRLGWVPL+PLP + +HLL+ Y
Sbjct: 1449 FLINVRGLGIKSVECIRLLTLHHPSFPVDTNVGRILVRLGWVPLEPLPEKIRLHLLEMYF 1508
Query: 1119 V 1119
V
Sbjct: 1509 V 1509
Score = 162 bits (411), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 137/284 (48%), Gaps = 80/284 (28%)
Query: 1295 SSALVALTAEAASVPTRKLKRCAHLRTEHHVYV--------------------------- 1327
S L+ L AAS P LK LRT H+VYV
Sbjct: 1708 SQELILLPPYAASFPAPLLKSVQRLRTIHYVYVPLHGQFLSDFEIEQNVQVRYTVQLSFL 1767
Query: 1328 -------------LPDAHELLR--GFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNS 1372
LPD H LL D+RD DDP YLLAIW+ E P ++
Sbjct: 1768 ALIHFNLVDCSYELPDHHPLLHQAKMDKRDSDDPCLYLLAIWNADEVPAAM--------P 1819
Query: 1373 KDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
K S S SCNS E V GTIL+PCRTAN+G FPLNGTYFQVNEVFADH +S
Sbjct: 1820 KISDDDASNPFASCNSGQE-----VPGTILVPCRTANKGSFPLNGTYFQVNEVFADHASS 1874
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNAL--------------------DMRQ--IQ 1470
H P+ V R + NL+R+ V FG+S T++F L DM Q IQ
Sbjct: 1875 HDPLRVSRTLMWNLKRKFVYFGTSVTSIFRDLKKVRLFASSQKDLTRNGIETDMSQGEIQ 1934
Query: 1471 EYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK---KEAGSKRS 1511
F +G+VCVR FD+ R P+PL RLH S +K AG++RS
Sbjct: 1935 CCFKKGYVCVRAFDQATRKPKPLAPRLHQSAAKIVAARAGAQRS 1978
>gi|326503606|dbj|BAJ86309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 723
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Query: 978 WDLLRR-IYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR Y G + D V+WEAV+ A ++A I RGQ ++A RI+ FL
Sbjct: 485 WDKLREEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLT 544
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+ + HGS DL+WLR +P + K+YL+ I GLG KSV+C+RLLSL+H AFPVDVNV RI
Sbjct: 545 RIKKDHGSFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 604
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL WV LQ + H L YP+M +Q YLWPRLC +D++ LYELH MITFGK+ C
Sbjct: 605 TRLQWVELQCCSEEFHSVDL--YPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVIC 662
Query: 1155 KKRSPNCGACPLRGECKHFASAV 1177
K PNC ACP RG+C+++ S +
Sbjct: 663 TKVDPNCNACPFRGDCRYYKSKL 685
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 18/144 (12%)
Query: 526 AVVPYQVGPSSEH--------GALVPHQIKEKRKKLKPEVV-LDPGTLRMWNLIMNIDDG 576
A+VPYQ ++ G L PH + +++P V+ LD TLR++ + ++
Sbjct: 227 AIVPYQNAAQADASCSALVPLGDLGPH--GNRSNQVRPRVLGLDDDTLRVYGALTKWEE- 283
Query: 577 TTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGV 632
D S E ++ W R +E + F A + + G R + W GSV+DSVVG
Sbjct: 284 --IDSESFEGVDIGSGPKWDDIRRKYENLVDWFIATVKDLFGPREYSRWGGSVIDSVVGT 341
Query: 633 YLTQNVSDNLSSSAYMSLAARFPL 656
+LTQNV+D+LSS+A+M LAA+FP+
Sbjct: 342 FLTQNVADHLSSNAFMILAAKFPM 365
>gi|218190781|gb|EEC73208.1| hypothetical protein OsI_07289 [Oryza sativa Indica Group]
Length = 1111
Score = 213 bits (541), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 185/375 (49%), Gaps = 69/375 (18%)
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNP- 1211
C K SPNC ACP +CK++ S++A R +LP P+E G+ G+ P
Sbjct: 758 ICTKVSPNCRACPFSAKCKYYNSSLA--RLSLP-PAEG------HGHEYGEEQASTATPG 808
Query: 1212 -----------------IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESP-ESE 1253
P I+I ES Y+ CEPIIE P SP + ESP E E
Sbjct: 809 RLLLSNDSHIAGFQQVCQPQIKINMPAGRESIYK---CEPIIEIPPSPEHEYEESPYEQE 865
Query: 1254 IDDDDFSIGDIEE-IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRK 1312
+ +DD DIE+ IP L+ + + + L + ++ ASV +K
Sbjct: 866 LYEDDLC--DIEDTIPELQYDFEIDLCSLKHTVNNGSWTPNSGKDLALINSQHASVQNKK 923
Query: 1313 LKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNS 1372
LK LRTEH+ YVLPD H +L F+ R P+DP PYLL + S
Sbjct: 924 LKNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVVIS----------------- 966
Query: 1373 KDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
C+ E V+GTILIPCRTA RG FPLNGTYFQ +EVFADH +S
Sbjct: 967 -----CSDE-------------HTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSS 1008
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
PI +PR I NL R IV FGSS ++ + I++ + +G++CVRGFDR R P+P
Sbjct: 1009 RSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKP 1068
Query: 1493 LVNRLHCSPSKKEAG 1507
+ +LH + + G
Sbjct: 1069 ICAKLHATNERNGTG 1083
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
Query: 978 WDLLRR-IYSTGEE-RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1035
WD LR YS G + + K DS DWEAV A EIA++I RGQ +IA RI+ FL R
Sbjct: 647 WDKLREEAYSKGYKIKGTGKSDSADWEAVLHAPAVEIANSIAVRGQHYVIALRIQAFLKR 706
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
+ + HG+ DL+WLR VP + K YL+ I GLG KSV+C+RLLSL+H FP
Sbjct: 707 VKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 757
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 522 NVHNAVVPYQVGPS-SEHGALVPHQ------IKEKR---KKLKPEVV-LDPGTLRMWNLI 570
N +A+VPYQ P+ + ALVP Q I R K L+ +V+ LD TL+++N++
Sbjct: 378 NGESALVPYQKAPAATSSSALVPIQNSTQLAIVHHRNHLKNLRTKVLGLDEKTLQVYNVL 437
Query: 571 MNIDDGTTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
D+ D S E ++ W + R FE + F A +H +LG RRF W GSV
Sbjct: 438 RKWDE---TDSESFEGVDIGSGPEWNETRRHFEHYVDVFIATVHGLLGPRRFSEWGGSVT 494
Query: 627 DSVVGVYLTQNVSDNLSSSAYMSLAARFP 655
DSVVG +LTQNV+DNLSS+A+++L A+FP
Sbjct: 495 DSVVGTFLTQNVADNLSSNAFLNLVAKFP 523
>gi|222622899|gb|EEE57031.1| hypothetical protein OsJ_06813 [Oryza sativa Japonica Group]
Length = 1051
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 185/375 (49%), Gaps = 69/375 (18%)
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNP- 1211
C K SPNC ACP +CK++ S++A R +LP P+E G+ G+ P
Sbjct: 698 ICTKVSPNCRACPFSAKCKYYNSSLA--RLSLP-PAEG------HGHEYGEEQASTATPG 748
Query: 1212 -----------------IPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESP-ESE 1253
P I+I ES Y+ CEPIIE P SP + ESP E E
Sbjct: 749 RLLLSNDSHIAGFQQVCQPQIKINMPAGRESIYK---CEPIIEIPPSPEHEYEESPYEQE 805
Query: 1254 IDDDDFSIGDIEE-IPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRK 1312
+ +DD DIE+ IP L+ + + + L + ++ ASV ++
Sbjct: 806 LYEDDLC--DIEDTIPELQYDFEIDLCSLKHTVNNGSWTPNSGKDLALINSQHASVQNKR 863
Query: 1313 LKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNS 1372
LK LRTEH+ YVLPD H +L F+ R P+DP PYLL + S
Sbjct: 864 LKNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVVIS----------------- 906
Query: 1373 KDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETS 1432
C+ E V+GTILIPCRTA RG FPLNGTYFQ +EVFADH +S
Sbjct: 907 -----CSDE-------------HTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSS 948
Query: 1433 HHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
PI +PR I NL R IV FGSS ++ + I++ + +G++CVRGFDR R P+P
Sbjct: 949 RSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKP 1008
Query: 1493 LVNRLHCSPSKKEAG 1507
+ +LH + + G
Sbjct: 1009 ICAKLHATNERNGTG 1023
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 978 WDLLRR-IYSTGEE-RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1035
WD LR YS G + + DS DWEAV A EIA++I RGQ +IA RI+ FL R
Sbjct: 587 WDKLREEAYSKGYKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIALRIQAFLKR 646
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
+ + HG+ DL+WLR VP + K YL+ I GLG KSV+C+RLLSL+H FP
Sbjct: 647 VKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 697
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 522 NVHNAVVPYQVGPS-SEHGALVPHQ------IKEKR---KKLKPEVV-LDPGTLRMWNLI 570
N +A+VPYQ P+ + ALVP Q I R K L+ +V+ LD TL+++N++
Sbjct: 318 NGESALVPYQKAPAATSSSALVPIQNSTQLAIVHHRNHLKNLRTKVLGLDEKTLQVYNVL 377
Query: 571 MNIDDGTTKDQTSNEDMEKW----WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
D+ D S E ++ W + R FE + F A +H +LG RRF W GSV
Sbjct: 378 RKWDE---TDSESFEGVDIGSGPEWNETRRHFEHYVDVFIATVHGLLGPRRFSEWGGSVT 434
Query: 627 DSVVGVYLTQNVSDNLSSSAYMSLAARFP 655
DSVVG +LTQNV+DNLSS+A+++L A+FP
Sbjct: 435 DSVVGTFLTQNVADNLSSNAFLNLVAKFP 463
>gi|168067245|ref|XP_001785533.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662839|gb|EDQ49643.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1894
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 165/292 (56%), Gaps = 36/292 (12%)
Query: 978 WDLLRRIYSTGEERSHDKM--DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1035
W+ LR + S D + D VDW AV+ A E+AD IK RGQ N +AGR+K FL+R
Sbjct: 1218 WEPLRARIVAEQTYSRDTLTEDCVDWNAVQQASVHEVADVIKNRGQHNALAGRLKAFLDR 1277
Query: 1036 LV-ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+ + +G IDLEW+R +PP+ K +LL G+GLKSVEC+RLL L H +FPVD NVGRIA
Sbjct: 1278 VHRDQNGVIDLEWIRKLPPEDAKAFLLSFRGVGLKSVECIRLLCLHHPSFPVDTNVGRIA 1337
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
VRLGWVPL+PLP + + LYELHY MITFGK+FC
Sbjct: 1338 VRLGWVPLEPLPEETQL-----------------------HLLELYELHYHMITFGKVFC 1374
Query: 1155 KKRSPNCGACPLRGECKHFASAVASARFALPGPSE-KGIVTSEFGNGIGQSPPLVVNPIP 1213
K PNC ACPLR ECKH+AS+ ASA+ L P + + ++ F P + I
Sbjct: 1375 TKSKPNCNACPLRSECKHYASSYASAKLLLKWPEKPQNKQSTVFALPEHHPAPQAESVIS 1434
Query: 1214 VIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIE 1265
R+ + Q C PIIEEP SP P P +I+++ F I + E
Sbjct: 1435 DSRL-------TEVQSVACLPIIEEPCSPEPCIDNIP--DIEENPFRIDNNE 1477
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 84/127 (66%), Gaps = 8/127 (6%)
Query: 1397 VRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSS 1456
VRGT+LIPC+TA RG FPLNGTYFQVNEVFADH +S PI+VPR + +LRR V F ++
Sbjct: 1763 VRGTLLIPCKTAMRGWFPLNGTYFQVNEVFADHTSSLQPISVPRTLLWSLRRRFVYFSTA 1822
Query: 1457 ATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK--------KEAGS 1508
+ LF + + +I+ F +G+VC+R FD R P+ L +RLH S +K K G
Sbjct: 1823 VSNLFKDMSLEEIRCCFQKGYVCLRAFDLATRQPKILAHRLHQSGAKIVKAPVPRKGKGI 1882
Query: 1509 KRSRDES 1515
RSR+ +
Sbjct: 1883 GRSRNNA 1889
Score = 87.8 bits (216), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 14/128 (10%)
Query: 547 KEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEK---WWQKEREVFEGRIQ 603
+++R + KP+V LD T++M+ + T +S+E+ E+ W++ R+ ++ R
Sbjct: 762 RKRRLRYKPKVDLDLNTVKMFKTL-------TMKGSSHEESERNKASWEECRQQWQNRAH 814
Query: 604 SFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK-STND- 661
F + M + G+R F WKGSV+DSV G +LTQNVSD LSS+A+M+L ARFP + T D
Sbjct: 815 QFISIMRQVQGNRAFSRWKGSVMDSVGGAFLTQNVSDFLSSNAFMALRARFPARPGTADE 874
Query: 662 --HTPSDE 667
HTP E
Sbjct: 875 ETHTPLAE 882
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 39/64 (60%)
Query: 1295 SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIW 1354
S L+ L A P KLK LRT H+VY LPD H LL D R+PDDP YLLAIW
Sbjct: 1603 SQELILLPPCADLAPAPKLKNVQRLRTVHYVYELPDNHPLLFAMDEREPDDPCFYLLAIW 1662
Query: 1355 SPGE 1358
SPG+
Sbjct: 1663 SPGK 1666
>gi|2911056|emb|CAA17566.1| hypothetical protein [Arabidopsis thaliana]
gi|7270355|emb|CAB80123.1| hypothetical protein [Arabidopsis thaliana]
Length = 917
Score = 193 bits (491), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 182/391 (46%), Gaps = 92/391 (23%)
Query: 977 DWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
DW+ LRR+Y+ R MDSV+W VR + QN++ IK+
Sbjct: 571 DWNNLRRMYTKEGSRPEMHMDSVNWSDVRLSG-------------QNVLETTIKK----- 612
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
G R+LS + + VD NVGRIAVR
Sbjct: 613 ---RGQF-------------------------------RILSERIL---VDTNVGRIAVR 635
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156
LG VPL+PLP + +H L EY ELHYQMITFGK+FC K
Sbjct: 636 LGLVPLEPLPNGVQMHQLFEY-----------------------ELHYQMITFGKVFCTK 672
Query: 1157 RSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIR 1216
PNC ACP++ ECK+FASA S++ L P EK + F N Q + V+ I
Sbjct: 673 TIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTFMNAHSQD--VAVDMTSNIN 730
Query: 1217 IEADPVSESGYQINNC-EPIIEEPRSPGPQCSESPESEIDDDDFS--IGDIEEIPTLRLQ 1273
+ + VS C +P++E P SP + ES ++I+D F +P +
Sbjct: 731 LVEECVSSGCSDQAICYKPLVEFPSSPRAEIPES--TDIEDVPFMNLYQSYASVPKIDFD 788
Query: 1274 EREFKENFPNFMEMNKVMLQD----SSALVALTAEAASVPT---RKLKRCAHLRTEHHVY 1326
K++ + + ++ M S ALV T E A +P RK+K LRTEH VY
Sbjct: 789 LDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVY 848
Query: 1327 VLPDAHELLRGFDRRDPDDPSPYLLAIWSPG 1357
VLPD HELL F+RR DDPSPYLLAIW PG
Sbjct: 849 VLPDNHELLHDFERRKLDDPSPYLLAIWQPG 879
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 542 VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGR 601
V IK +K + +V LDP T++ W+++M ++D ++ E E W+KERE+F+ R
Sbjct: 404 VTTMIKADKKLVTAKVNLDPETIKEWDVLM-VNDSPSRSYDDKE-TEAKWKKEREIFQTR 461
Query: 602 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL 656
I F RMH + G+R+FK WKGSVVDSVVGV+LTQN +D LSS+A+MS+AA+FP+
Sbjct: 462 IDLFINRMHRLQGNRKFKQWKGSVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFPV 516
>gi|7406461|emb|CAB85563.1| putative protein [Arabidopsis thaliana]
Length = 555
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 111/141 (78%), Gaps = 3/141 (2%)
Query: 978 WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
WD LR+ E ER+ + MDS+D+EA+R A SEI++AIKERG N++A RIK+FL
Sbjct: 414 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 473
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R+V+ HG IDLEWLR PPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 474 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 533
Query: 1095 VRLGWVPLQPLPGDLHIHLLK 1115
VR+GWVPLQPLP L +HLL+
Sbjct: 534 VRMGWVPLQPLPESLQLHLLE 554
>gi|224068969|ref|XP_002326243.1| predicted protein [Populus trichocarpa]
gi|222833436|gb|EEE71913.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 193 bits (490), Expect = 7e-46, Method: Composition-based stats.
Identities = 88/111 (79%), Positives = 97/111 (87%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
MDS+DWEAVRCAD +EIA+ IKERG NI+A RIK LNRLV HGSIDLEWLR++PPDK
Sbjct: 1 MDSLDWEAVRCADVNEIANTIKERGMNNILAERIKNLLNRLVREHGSIDLEWLRDIPPDK 60
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLP 1106
KEYLL I GLGLKSVEC+RLL+L H+AFPVD NVGRIAVRLGWVPLQPLP
Sbjct: 61 AKEYLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 111
>gi|224138764|ref|XP_002326684.1| DNA glycosylase [Populus trichocarpa]
gi|222834006|gb|EEE72483.1| DNA glycosylase [Populus trichocarpa]
Length = 121
Score = 192 bits (487), Expect = 2e-45, Method: Composition-based stats.
Identities = 88/121 (72%), Positives = 103/121 (85%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
MDSVDWEAVR A+ S++A I+ RGQQ IIAGRIK+FL+R+V++H SIDLEWLR PPD
Sbjct: 1 MDSVDWEAVRQAETSKVASIIEGRGQQTIIAGRIKQFLDRVVDMHKSIDLEWLRYAPPDD 60
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
VK+YLL+ GLGLKSVECVRLLSLQ +AFPVDVNV RIAVRLGWVPL+ LPG L HL++
Sbjct: 61 VKDYLLEFMGLGLKSVECVRLLSLQQVAFPVDVNVARIAVRLGWVPLKALPGSLQFHLIE 120
Query: 1116 E 1116
E
Sbjct: 121 E 121
>gi|14021063|dbj|BAB47587.1| putative FPPsynthase1 [Euphorbia tirucalli]
Length = 119
Score = 189 bits (480), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/108 (78%), Positives = 94/108 (87%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D +DWEAVRCAD EIA+ IKERG N++A RIK+FLNRLV HG+IDLEWLR+VPPDK
Sbjct: 12 DYLDWEAVRCADVDEIANTIKERGMNNVLAKRIKDFLNRLVREHGNIDLEWLRDVPPDKA 71
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQP
Sbjct: 72 KEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 119
>gi|224126427|ref|XP_002329551.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
gi|222870260|gb|EEF07391.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
Length = 121
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 99/121 (81%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
MDSVDWEAVR A+ SEIA I+ RGQQ IIAG IK FLNR+VE+H SIDLEWLR PPD
Sbjct: 1 MDSVDWEAVRQAETSEIASIIEARGQQTIIAGSIKGFLNRVVEMHKSIDLEWLRYAPPDD 60
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
VK+YLL+ GLGLKSVECVRLLS+QH+AFPVD+NV I RLGW PL+PLPG L HL++
Sbjct: 61 VKDYLLEFTGLGLKSVECVRLLSIQHVAFPVDINVAWIVFRLGWAPLKPLPGSLQFHLIE 120
Query: 1116 E 1116
E
Sbjct: 121 E 121
>gi|297723055|ref|NP_001173891.1| Os04g0358000 [Oryza sativa Japonica Group]
gi|255675367|dbj|BAH92619.1| Os04g0358000 [Oryza sativa Japonica Group]
Length = 1310
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 162/579 (27%), Positives = 235/579 (40%), Gaps = 134/579 (23%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
KKN + +D R + G R D D VDWEA+ A +++ D IK+RGQ + +A
Sbjct: 464 KKNDTSHWHSLYDEAR---NRGYIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMA 520
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
RI FL R+ HG+IDLEWLR +P K R+ + A
Sbjct: 521 FRILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIIS 566
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT-LYELHYQ 1145
V+ GR +Q +PG L + R+C +Q+T YELH Q
Sbjct: 567 GVSSGRQQNSKFSTLIQAMPGYLS-----------------FDRICLTNQRTNRYELHCQ 609
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSP 1205
MITFGK C+K PNCGACP ECK++ S A ALP S++ + ++
Sbjct: 610 MITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKDANMDDPAKTY 669
Query: 1206 PLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSP-----GPQCSESPES--EIDDDD 1258
L+ +IE +E +N CEP+IE P +P G E E+ DDD
Sbjct: 670 DLIFKA-HQYQIEYGKNTE----MNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDM 724
Query: 1259 FSIG----DIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLK 1314
IG D+E+I E + + P ++ ++ + A S P +
Sbjct: 725 EDIGRHDYDMEDIEHDYDMEVDLRSAKPT-TNTSQAGATPGKEMIPINPRAKSTP---MV 780
Query: 1315 RCAHLRTEHHVY-------------------VLPDAHELLRGFDRRDPDDPSPYLLAIWS 1355
+ LRTE+ ++PD H +L+ FD R P D +PYLL S
Sbjct: 781 KKFSLRTEYTAIFYSWALIILVFFTIAVFRCIIPDGHIILKKFDPRVPGDRNPYLLVFRS 840
Query: 1356 PGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPL 1415
E V+ TIL
Sbjct: 841 FDEH------------------------------------TVKATIL------------- 851
Query: 1416 NGTYFQVNEVFADHETSHHPINVPRHTIANLRRE--IVCFGSSATTLFNALDMRQIQEYF 1473
VFADH +S PI + R + LRR+ IV FG+ ++ + ++
Sbjct: 852 ---------VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVTKGQTREGLYHFY 902
Query: 1474 WRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSR 1512
G++C R FDRR + P+ L +H + K+ G KR+R
Sbjct: 903 NEGYICTREFDRRTKFPKQLCVEIHATNVNKDIGKKRAR 941
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 591 WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSL 650
W + R FE ++ F M I+GDR F PW GSVV SVVG +LTQNVSDNLSS+A+M++
Sbjct: 264 WNERRREFERKVDHFMYNMRSIIGDRNFSPWGGSVVTSVVGTFLTQNVSDNLSSNAFMTI 323
Query: 651 AARFPLKSTNDHTPSDENL 669
AARFPLK+ + +N+
Sbjct: 324 AARFPLKNRRNAGHHSDNV 342
>gi|224100671|ref|XP_002311969.1| predicted protein [Populus trichocarpa]
gi|222851789|gb|EEE89336.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 179 bits (455), Expect = 9e-42, Method: Composition-based stats.
Identities = 83/108 (76%), Positives = 94/108 (87%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
DS+D+EAVRCA +EI++AIKERG I+A RI+EFLNRLV HGSIDLEWLR+VPP K
Sbjct: 1 DSLDYEAVRCAGVNEISEAIKERGMNKILAERIQEFLNRLVREHGSIDLEWLRDVPPGKA 60
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
K+YLL I GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQP
Sbjct: 61 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 108
>gi|412985467|emb|CCO18913.1| predicted protein [Bathycoccus prasinos]
Length = 2056
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 997 DSVDWEAV-RCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
D VDW V A +I + I+ RG +++A RIK+ L R+++ G + LE+LR ++
Sbjct: 1123 DCVDWHRVLHEASIDDIIECIRCRGMHSMLAHRIKKILRRVLDERGVLSLEFLREASTEE 1182
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
YL +IEG+G K+ CV LLSL++ FPVDVNVGRI RLGWVPL+ D + LL+
Sbjct: 1183 ANAYLNEIEGMGAKTSACVNLLSLENRDFPVDVNVGRIMARLGWVPLE---DDFKLELLE 1239
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+Y + + +L RL D LYELHY MIT GK+FC KR PNC +CP+ +C++
Sbjct: 1240 QYAPEESVYEFLSERLNTFDVTMLYELHYHMITLGKVFCAKRDPNCASCPMNSDCEY 1296
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 1397 VRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSS 1456
++ + A + FPL+GTYFQVNEVF D ++ P++V T+ + + G+S
Sbjct: 1757 IKCVFFVTALCACKRSFPLHGTYFQVNEVFLDLRSAAKPVSVDIETLKTSPKIVTLLGAS 1816
Query: 1457 ATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPL 1493
++ + ++ F +CVR ++RR PR L
Sbjct: 1817 IGSVTRGMTRTEVTRLFNHQVLCVRAWERRTGYPREL 1853
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 587 MEKWWQKEREVFEGRIQSFTARMHLILGDRRFK-PWKGSVVDSVVGVYLTQNVSDNLSSS 645
++K+ E+ ++ +I F + LG R W GSV+DSV+G LTQNV+D LSS+
Sbjct: 720 IQKFGHDEKRMWRDKIGEFLRKSRKTLGHRPLDVSWGGSVLDSVIGANLTQNVTDVLSST 779
Query: 646 AYMSLAARFPL 656
A ++L A+FP+
Sbjct: 780 AMLNLMAKFPV 790
>gi|255072753|ref|XP_002500051.1| DNA glycosylase [Micromonas sp. RCC299]
gi|226515313|gb|ACO61309.1| DNA glycosylase [Micromonas sp. RCC299]
Length = 2192
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 991 RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLR 1049
RS + D +DW AV A ++ + I+ RG + A RI+ L R+ E G + LE+LR
Sbjct: 1387 RSENTYDMIDWRAVMNAPLGDVVECIRCRGMHFMQARRIQRILRRIHDERKGELSLEFLR 1446
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
N + + YLL +EG G+K+V C+ LLSL FPVDVNVGRI RLGWVPL+ +
Sbjct: 1447 NCTVEIARGYLLSLEGFGVKTVSCITLLSLFRADFPVDVNVGRIMARLGWVPLE---TEQ 1503
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ L EY + +L RL +TL+ELHY MIT GK+FC+KR+PNC ACPLR
Sbjct: 1504 ALEELAEYAPEPAVYTFLRERLNSFGLQTLFELHYHMITLGKVFCEKRTPNCRACPLRDM 1563
Query: 1170 CKHFASA 1176
C++ +S
Sbjct: 1564 CEYASSG 1570
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 1378 CNSEICYSCNSVCERNAG--IVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHP 1435
C + + +AG +V T+++PCR A G+FPL+GTYFQ NEVF D ET+ P
Sbjct: 1847 CGLPSATAAARIASESAGRKMVPLTVMVPCRAAMNGKFPLHGTYFQTNEVFLDAETAVRP 1906
Query: 1436 INVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPL 1493
V + L V GSS ++ + ++ F VCVR ++ PRPL
Sbjct: 1907 KLVAASELETLPTVSVYLGSSVASICRGMSRAEVASSFANRAVCVRSWEPHTGHPRPL 1964
Score = 70.5 bits (171), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 586 DMEKWWQKEREVFEGRIQSFTARMHLILGDRRFK--PWKGSVVDSVVGVYLTQNVSDNLS 643
DM + + ER + + F AR LGDRR K W GSV+DSV G LTQNVSD LS
Sbjct: 1133 DMIVFGRDERLEWARKTGMFLARARTALGDRRLKMDAWGGSVLDSVFGALLTQNVSDVLS 1192
Query: 644 SSAYMSLAARFPLKST 659
SSA M+LAA+FP T
Sbjct: 1193 SSAIMNLAAKFPGPGT 1208
>gi|224113519|ref|XP_002316518.1| predicted protein [Populus trichocarpa]
gi|222865558|gb|EEF02689.1| predicted protein [Populus trichocarpa]
Length = 1312
Score = 154 bits (388), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 167/319 (52%), Gaps = 38/319 (11%)
Query: 456 KIIQVERNGLPTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCN 515
KI Q ++ L + P RG +Q ST II + + L + G ++ N
Sbjct: 763 KIPQEPKDDLKVHQQPYAKRRGRPA---KQTFSSTIEQIIYQMEGLRLNAGSKKIE---N 816
Query: 516 KADGPSNVHNAVVPYQVGPSSEHGALVPHQIKE--KRKKLKPEVVLDPGTLRMWNLIMNI 573
K NA+VPY+ G LVP+ E K+ K +P+V LDP + R+W L+M
Sbjct: 817 KE------QNALVPYK-----GDGKLVPYDGFEVVKKHKPRPKVDLDPESDRVWKLLMG- 864
Query: 574 DDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVY 633
+G+ + +++ E+WW +ER+VF GR+ SF ARMHL+ GDRRF WKGSVVDSV+GV+
Sbjct: 865 KEGSQGLEGTDKGKEQWWGEERKVFHGRVDSFIARMHLVQGDRRFSKWKGSVVDSVIGVF 924
Query: 634 LTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRT------TASLEPIGSNSTSNGA 687
LTQNVSD+LSSSA+MSLA+ FPLK + E T L P SN
Sbjct: 925 LTQNVSDHLSSSAFMSLASLFPLKLRSSGACDRERTSIVIEEPDTCILNPNDIKWNSNPL 984
Query: 688 VYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQ-AFDTS 746
S + EP KD + F I+R ++ E + + V SQ +FD+S
Sbjct: 985 YNQSSVTHHGSAEPH-------KDSETLF---IERASMVETQSHSLEEEFVLSQDSFDSS 1034
Query: 747 SVQSLDRTQLFPTGNSKAD 765
+VQ+ + + + NS+A+
Sbjct: 1035 TVQA-NGVRSYSGSNSEAE 1052
Score = 47.8 bits (112), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 36/136 (26%)
Query: 2 KNHRPRVLVEGMPKKEPK--------PKKAP-----------QQPKT-PKPVTPNRAHET 41
+ HRP+V+VEG PK+ PK PK+ P ++P T P T + A +
Sbjct: 314 RKHRPKVIVEGKPKRTPKAATTKITDPKEKPIEKRKYVRKALKEPATKPTESTVDTAPPS 373
Query: 42 TRKRKYVRKNSVSGNVV-----MDESVSK---RRKCGR-------GNRQSNSDA-IILLP 85
+ KRKYVRK ++ + V + E+++ +RK R NR ++S I
Sbjct: 374 SAKRKYVRKKALDESAVQHTDSIGETINTHAVKRKYVRKKDLNKSANRHADSTVEITQSS 433
Query: 86 PPPIKTCRQALNFDLE 101
K+CR+AL FDLE
Sbjct: 434 SADAKSCRRALRFDLE 449
>gi|224126423|ref|XP_002329550.1| hypothetical protein POPTRDRAFT_783773 [Populus trichocarpa]
gi|222870259|gb|EEF07390.1| hypothetical protein POPTRDRAFT_783773 [Populus trichocarpa]
Length = 213
Score = 151 bits (381), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 23/185 (12%)
Query: 535 SSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKE 594
+SE A+VP+Q R + + EV LDP +LRMWN ++ I G +++ E E+WW++E
Sbjct: 10 TSEIHAVVPYQ---GRGRAEHEVDLDPESLRMWNQLVKIYSGVDEEKEDGE-REQWWRRE 65
Query: 595 REVFEGRIQSFTARMHLIL---------------GDRRFKPWKGSVVDSVVGVYLTQNVS 639
F+GRI F + +H +L GDRRFK W GSV+ SVVGV+LTQNV+
Sbjct: 66 LLTFQGRIDLFISLLHQVLETFYCTIEGHIACFSGDRRFKQWNGSVMGSVVGVFLTQNVA 125
Query: 640 DNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVT 699
D+LSS+AYMSL A+FP++ST+ S T P+ S+ S G +DS+G+ YFVT
Sbjct: 126 DHLSSAAYMSLVAKFPVRSTSIQQES----MTVDDQRPVESSMASIGPTFDSDGSQYFVT 181
Query: 700 EPEPD 704
EPEPD
Sbjct: 182 EPEPD 186
>gi|384251193|gb|EIE24671.1| hypothetical protein COCSUDRAFT_62092 [Coccomyxa subellipsoidea
C-169]
Length = 1568
Score = 147 bits (371), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
LEWLR+V D ++YL+ + GLG KSV CV LL+L FPVD NVGRI RLGW+PL
Sbjct: 722 LEWLRDVAEDDARQYLMGVMGLGRKSVACVMLLALCKHDFPVDTNVGRICARLGWIPLD- 780
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ + L Y ++ YL RL + D +TLYELHYQMIT GK+FC K+ PNC AC
Sbjct: 781 --AEEALEDLDRYAPEPEVHKYLHSRLMHFDTETLYELHYQMITLGKVFCSKKDPNCRAC 838
Query: 1165 PLRGECKH 1172
PLR +C++
Sbjct: 839 PLRPQCEY 846
Score = 100 bits (248), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 55/94 (58%)
Query: 1400 TILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATT 1459
+L+PCRTA RGRFPLNGTYFQVNEVF D + PI V + R V FG+S
Sbjct: 1282 AVLVPCRTAMRGRFPLNGTYFQVNEVFLDETSLRSPIQVADEVVGAWVRRPVYFGTSVAA 1341
Query: 1460 LFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPL 1493
+ + ++ +F G +CVR FD R PRPL
Sbjct: 1342 VCRGMGQSEVTRFFLDGLLCVRAFDPITRFPRPL 1375
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 598 FEGRIQSFTARMHLILGDRR--FKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFP 655
++ R+ SF +LGDRR W GSV+DSV+GV+LTQNVSD LSS A+M+LAA FP
Sbjct: 423 WQMRVASFLQAARGVLGDRRRVSGQWAGSVLDSVMGVFLTQNVSDALSSKAWMTLAATFP 482
Query: 656 LKSTNDH 662
L + ++
Sbjct: 483 LAAADNQ 489
>gi|224138768|ref|XP_002326685.1| hypothetical protein POPTRDRAFT_796365 [Populus trichocarpa]
gi|222834007|gb|EEE72484.1| hypothetical protein POPTRDRAFT_796365 [Populus trichocarpa]
Length = 897
Score = 147 bits (370), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 115/166 (69%), Gaps = 10/166 (6%)
Query: 540 ALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFE 599
AL+P+ R + + EV LDP +LR WN +M ID G +++ ++WWQ+E+ F
Sbjct: 596 ALIPYW---GRGRARHEVDLDPESLRRWNQLMKIDSGEGEEEDGKR--KEWWQREKITFN 650
Query: 600 GRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKST 659
GRI +FT+R H LGDRRF+ WKGSVVDSVVGV+LTQNVSD+LSS+AYMSL FP++ST
Sbjct: 651 GRIDAFTSRSHQFLGDRRFRQWKGSVVDSVVGVFLTQNVSDHLSSAAYMSLVENFPVQST 710
Query: 660 NDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTE-PEPD 704
++ S T +PI S+ TS GA YD++GN YFVTE PEPD
Sbjct: 711 SNQQAS----MTIDGQKPIESSMTSIGATYDADGNRYFVTEVPEPD 752
>gi|308803847|ref|XP_003079236.1| DEMETER protein (ISS) [Ostreococcus tauri]
gi|116057691|emb|CAL53894.1| DEMETER protein (ISS), partial [Ostreococcus tauri]
Length = 856
Score = 144 bits (364), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 3/138 (2%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++ G + LE+LR P D+ +EYLL ++G+G+K+ CV LL+L FPVDVNVGRI
Sbjct: 243 RVMAQRGCLSLEFLREAPTDEAREYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIM 302
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLGWVPL+ + + L +Y + +L RL LYELHY MIT GK+FC
Sbjct: 303 ARLGWVPLE---SETALEELAQYAPEPAVYTFLRKRLNSFGIDMLYELHYHMITLGKVFC 359
Query: 1155 KKRSPNCGACPLRGECKH 1172
KR PNCGACPLR C++
Sbjct: 360 GKRLPNCGACPLRDICEY 377
Score = 70.5 bits (171), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 1400 TILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATT 1459
IL PC ++ +FPL+GTYFQ NEVF D ++S P+ + + + RR V G+S +
Sbjct: 617 AILTPCASSMGNKFPLHGTYFQTNEVFLDEKSSVVPLKILKGALVKCRRVRVLVGTSIGS 676
Query: 1460 LFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPL 1493
+ + Q+ F +CVR ++R + P PL
Sbjct: 677 ITRGMSRAQVTAAFASQRICVRSWNRVTKQPGPL 710
>gi|357445861|ref|XP_003593208.1| Transcriptional activator DEMETER [Medicago truncatula]
gi|355482256|gb|AES63459.1| Transcriptional activator DEMETER [Medicago truncatula]
Length = 251
Score = 144 bits (363), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 126/235 (53%), Gaps = 23/235 (9%)
Query: 1232 CEPIIEEPRSPGPQCSESPESEIDDDDFSIG---DIEEIPTLRL--QEREFKENFPN-FM 1285
CEPI+E P SP + +E + E D+ + DIE++ TL L + F + N F
Sbjct: 30 CEPIVEMPASPELESTELIDDEKMYYDYVVENDEDIEDMMTLNLSIESSCFSKICDNSFQ 89
Query: 1286 EMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDD 1345
E + M +S LVAL A K+K + L+TE VYVL D H LL + R+ DD
Sbjct: 90 EFDHDMTAPTS-LVALHPNATINRLSKMKNASRLKTERLVYVLTDNHPLLTEYPPREHDD 148
Query: 1346 PSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPC 1405
PSPYLL IW P E +S S + + ++S V GT+LIPC
Sbjct: 149 PSPYLLVIWLPDELESSDESSKTDLHEEESS----------------QTKTVLGTLLIPC 192
Query: 1406 RTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTL 1460
RTA + FPLNGTYFQVNEVFAD+ + PINVPR I +L + I FG+ +T+
Sbjct: 193 RTAMKACFPLNGTYFQVNEVFADYASMIQPINVPRQWIWSLEKRITYFGTGTSTI 247
>gi|357452085|ref|XP_003596319.1| Repressor of silencing [Medicago truncatula]
gi|355485367|gb|AES66570.1| Repressor of silencing [Medicago truncatula]
Length = 684
Score = 144 bits (362), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 83/122 (68%), Gaps = 19/122 (15%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+I DAIKERG N +A R++ FL RLV+ HGSIDLEWLR+VPPD+ KEYL
Sbjct: 546 KIVDAIKERGMNNKLAKRVQNFLIRLVDDHGSIDLEWLRDVPPDQTKEYL---------- 595
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
IAFP+D NVGRIAVRLGWVPL PLP L +HLL+ YP+++ IQ +LW R
Sbjct: 596 ---------SSIAFPIDTNVGRIAVRLGWVPLHPLPESLQLHLLELYPLVNSIQKHLWAR 646
Query: 1131 LC 1132
LC
Sbjct: 647 LC 648
Score = 103 bits (256), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 15/109 (13%)
Query: 990 ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLR 1049
E++ + MDSVDW+ VRC D +IADAIKERG N +A I+ FL RLV+ HG IDLE
Sbjct: 117 EKTENTMDSVDWDDVRCVDCKKIADAIKERGINNKLAKHIQNFLIRLVDDHGRIDLEC-- 174
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
+ LGLKS +CV+LL+L AFPV N+GRI++ LG
Sbjct: 175 -------------VAELGLKSAKCVQLLTLHQPAFPVATNIGRISIHLG 210
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 28/179 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+L I+ L ++EC+ + S++ + + I + GWVPLQPLP L +HLL+ P+
Sbjct: 307 MLVIQPLRAYALECLVIQSVEGSCPGMFI----IQIVGGWVPLQPLPESLQLHLLELNPL 362
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
++ IQ +LW RL L Y I+ G ++ KK NC ACP+R +C+HFASA AS
Sbjct: 363 VNFIQKHLWARLSTLP--------YDYISKGLMYQKK--TNCNACPMRADCRHFASAFAS 412
Query: 1180 ARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEE 1238
P P + I S GN + P VV +S+ +++N C+PIIEE
Sbjct: 413 TTLMFPRPEQCFIGAS--GNSVTDKIPPVV------------MSQLHFKVNICQPIIEE 457
Score = 85.1 bits (209), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 593 KEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAA 652
+E ++ GR +SF ARMH I G +F WKGS+VD VVGV+LTQ+VSD+LS SA+MSLAA
Sbjct: 456 EECKLLRGRAESFIARMHPIQGYIQFSRWKGSIVDLVVGVFLTQHVSDHLSCSAFMSLAA 515
Query: 653 RFPLKS 658
+FP KS
Sbjct: 516 QFPKKS 521
>gi|218194662|gb|EEC77089.1| hypothetical protein OsI_15494 [Oryza sativa Indica Group]
Length = 1253
Score = 134 bits (338), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 149/560 (26%), Positives = 217/560 (38%), Gaps = 156/560 (27%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
KKN + +D R + G R D D VDWEA+ A +++ D IK+RGQ + +A
Sbjct: 467 KKNDTSHWHSLYDEAR---NRGYIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMA 523
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
RI FL R+ HG+IDLEWLR +P K R+ + A
Sbjct: 524 FRILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIIS 569
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT-LYELHYQ 1145
V+ GR +Q +PG L + R+C +Q+T YELH Q
Sbjct: 570 GVSSGRQQNSKFSTLIQAMPGYLS-----------------FDRICLTNQRTNRYELHCQ 612
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSP 1205
MITFGK A ALP S++ + ++
Sbjct: 613 MITFGK----------------------------AALALPEYSQQDATKDANMDDPAKTY 644
Query: 1206 PLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSP-----GPQCSESPES--EIDDDD 1258
L+ +IE +E +N CEP+IE P +P G E E+ DDD
Sbjct: 645 DLIFKA-HQYQIEYGKNTE----MNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDM 699
Query: 1259 FSIG----DIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLK 1314
IG D+E+I E + + P ++ ++ + A S P +
Sbjct: 700 EDIGRHDYDMEDIEHDYDMEVDLRSAKPT-TNTSQAGATPGKEMIPINPRAKSTP---MV 755
Query: 1315 RCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD 1374
+ LRTE+ ++PD H +L+ FD R P D +PYLL S E
Sbjct: 756 KKFSLRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLVFRSFDEH--------------- 800
Query: 1375 SKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHH 1434
V+ TIL VFADH +S
Sbjct: 801 ---------------------TVKATIL----------------------VFADHSSSRS 817
Query: 1435 PINVPRHTIANLRRE--IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRP 1492
PI + R + LRR+ IV FG+ ++ +G++C R FDRR + P+
Sbjct: 818 PIEINRDLVWELRRQTCIVHFGTRVHSVT-------------KGYICTREFDRRTKFPKQ 864
Query: 1493 LVNRLHCSPSKKEAGSKRSR 1512
L +H + K+ G KR+R
Sbjct: 865 LCVEIHATNVNKDIGKKRAR 884
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 591 WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSL 650
W + R FE ++ F M I+GDR F PW GSVV SVVG +LTQNVSDNLSS+A+M++
Sbjct: 267 WNERRREFERKVDHFMYNMRSIIGDRNFSPWGGSVVTSVVGTFLTQNVSDNLSSNAFMTI 326
Query: 651 AARFPLKSTNDHTPSDENL 669
AARFPLK+ + +N+
Sbjct: 327 AARFPLKNRRNAGHHSDNV 345
>gi|38346441|emb|CAE04435.2| OSJNBa0018J19.2 [Oryza sativa Japonica Group]
gi|116309571|emb|CAH66631.1| OSIGBa0105P02.5 [Oryza sativa Indica Group]
Length = 798
Score = 130 bits (326), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 162/373 (43%), Gaps = 55/373 (14%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
KKN + +D R + G R D D VDWEA+ A +++ D IK+RGQ + +A
Sbjct: 464 KKNDTSHWHSLYDEAR---NRGYIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMA 520
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
RI FL R+ HG+IDLEWLR +P K R+ + A
Sbjct: 521 FRILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIIS 566
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT-LYELHYQ 1145
V+ GR +Q +PG L + R+C +Q+T YELH Q
Sbjct: 567 GVSSGRQQNSKFSTLIQAMPGYLS-----------------FDRICLTNQRTNRYELHCQ 609
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSP 1205
MITFGK C+K PNCGACP ECK++ S A ALP S++ + ++
Sbjct: 610 MITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKDANMDDPAKTY 669
Query: 1206 PLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSP-----GPQCSESPES--EIDDDD 1258
L+ +IE +E +N CEP+IE P +P G E E+ DDD
Sbjct: 670 DLIFK-AHQYQIEYGKNTE----MNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDM 724
Query: 1259 FSIG----DIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLK 1314
IG D+E+I E + + P ++ ++ + A S P +
Sbjct: 725 EDIGRHDYDMEDIEHDYDMEVDLRSAKPT-TNTSQAGATPGKEMIPINPRAKSTP---MV 780
Query: 1315 RCAHLRTEHHVYV 1327
+ LRTE+ Y
Sbjct: 781 KKFSLRTEYTAYA 793
Score = 93.2 bits (230), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%)
Query: 591 WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSL 650
W + R FE ++ F M I+GDR F PW GSVV SVVG +LTQNVSDNLSS+A+M++
Sbjct: 264 WNERRREFERKVDHFMYNMRSIIGDRNFSPWGGSVVTSVVGTFLTQNVSDNLSSNAFMTI 323
Query: 651 AARFPLKS 658
AARFPLK+
Sbjct: 324 AARFPLKN 331
>gi|413949116|gb|AFW81765.1| hypothetical protein ZEAMMB73_889003 [Zea mays]
Length = 107
Score = 119 bits (297), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/88 (60%), Positives = 64/88 (72%)
Query: 1411 GRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQ 1470
G FPLNGTYFQVNEVF++H +SH+PI+V R + NL+R +V FG+S T+F L +IQ
Sbjct: 3 GSFPLNGTYFQVNEVFSNHRSSHNPIHVKREQLWNLQRCMVFFGTSVPTIFRGLTTEEIQ 62
Query: 1471 EYFWRGFVCVRGFDRRYRCPRPLVNRLH 1498
FWRG VCVRGFDR R PRPL LH
Sbjct: 63 HCFWRGVVCVRGFDRETRAPRPLCPHLH 90
>gi|302856195|ref|XP_002959522.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f. nagariensis]
gi|300254966|gb|EFJ39413.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f. nagariensis]
Length = 108
Score = 115 bits (287), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 72/107 (67%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D VDWEAVR A + +AD I+ RG ++A RIK FLN++ +I LEWLRN ++
Sbjct: 2 DIVDWEAVRTAPDELLADLIRCRGMHVMLARRIKAFLNQVRTGRSTISLEWLRNANVEEA 61
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
YL+ +EGLG KSV C+ LL+L FPVD+NV R+ RLGW+P++
Sbjct: 62 TNYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE 108
>gi|145346471|ref|XP_001417710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577938|gb|ABO96003.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 107
Score = 108 bits (270), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 68/107 (63%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D VDW AV A EI I+ RG ++A RIK L R++ G + LE+LR+ P
Sbjct: 1 DQVDWYAVLDAPLVEIVKCIRCRGMHWMLARRIKGILKRVMAQRGCLSLEFLRDTPTRDA 60
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
EYLL ++G+G+K+ CV LL+L FPVDVNVGRI RLGWVPL+
Sbjct: 61 NEYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIMARLGWVPLE 107
>gi|303277163|ref|XP_003057875.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460532|gb|EEH57826.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 108
Score = 107 bits (268), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDK 1055
D +DW AV A ++ + I+ RG ++A RIK L R+ E G++ LE+LR+VP +
Sbjct: 1 DLIDWNAVLKAPIEDVVECIRCRGMHFMLARRIKNLLRRIASERDGALSLEFLRDVPTEL 60
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
+ YLL +EG G+K+V C+ LL+L FPVDVNVGRI RLGWVPL+
Sbjct: 61 ARGYLLSLEGYGVKTVSCILLLALYRADFPVDVNVGRIMARLGWVPLE 108
>gi|86605550|ref|YP_474313.1| base excision DNA repair protein [Synechococcus sp. JA-3-3Ab]
gi|86554092|gb|ABC99050.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-3-3Ab]
Length = 222
Score = 103 bits (258), Expect = 7e-19, Method: Composition-based stats.
Identities = 63/170 (37%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAV AD +++A I+ G + A RI+E L +V+ GS+ L++LR++ YL
Sbjct: 63 WEAVLAADPTKLAQVIRPGGLAQLKAARIQEILAAIVKRQGSLSLDFLRDLDDADALAYL 122
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L ++G+GLK+ CV L L PVD +V R+A RLG V + P D L P
Sbjct: 123 LSLKGVGLKTAACVLLFGLGRDLCPVDTHVHRVANRLGLVRARH-PDDTFAQLSPRIPA- 180
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
Y LH +I GK CK R P CG CPLR EC
Sbjct: 181 ----------------GKAYSLHVNLIRLGKRICKARMPECGRCPLRHEC 214
>gi|440791540|gb|ELR12778.1| base excision DNA repair protein, HhHGPD subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 494
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 19/174 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
DWE VR A S++AD I+ G G I+ LN+L E G + LE LR++P ++VK
Sbjct: 228 DWERVRTAKPSQLADVIRTGGLAQRKGGIIQGLLNQLHEERDGELSLEHLRDMPTEEVKH 287
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L +G+G K+ CV + +++ FPVD +V R++ RLG+V
Sbjct: 288 ALTKYKGIGPKTASCVLMFNMKRADFPVDTHVHRVSTRLGFVR----------------- 330
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ Q Y + D+ ++H +I GK CK RSP CG C LR +C++
Sbjct: 331 GTTREQTYEFMNATMPDE-IKRDMHVLLIRHGKQVCKARSPKCGECVLRDDCRY 383
>gi|302837608|ref|XP_002950363.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f. nagariensis]
gi|300264368|gb|EFJ48564.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f. nagariensis]
Length = 1442
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ YL+ +EGLG KSV C+ LL+L FPVD+NV R+ RLGW+P++ + + L
Sbjct: 25 LRSYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE---AEATLEQLD 81
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
YP ++ YL RL + D +TLYELHYQ IT GK+
Sbjct: 82 SYPQEPEVHKYLRSRLMHFDLETLYELHYQSITLGKL 118
Score = 63.5 bits (153), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 68/167 (40%), Gaps = 49/167 (29%)
Query: 1397 VRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHP----------INVPRHTIANL 1446
+R +L+PCR A RG FPLNGTYFQ NEVF T+ P I V +A L
Sbjct: 1269 LRAAVLMPCRVALRGGFPLNGTYFQTNEVFLVEHTAQQPLRLRLGQLLGIGV-EAGLAAL 1327
Query: 1447 R------------------------------REI------VCFGSSATTLFNALDMRQIQ 1470
RE+ V FG + +++ + ++
Sbjct: 1328 EPPSPSSLPTPSLPQNDAVEMAAAFGPTIVPREVRHECTAVYFGHATSSITRDMTAAEVA 1387
Query: 1471 EYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKK--EAGSKRSRDES 1515
E F G VCVR F PRP+ L + + AG++RS E+
Sbjct: 1388 ELFEEGAVCVRAFCLFTGNPRPIPAFLGAPSAGRGPRAGARRSAIEA 1434
>gi|365873799|ref|ZP_09413332.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
gi|363983886|gb|EHM10093.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
Length = 242
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W +V A E+A+AIK G N A RI+E L + G +E +++ PPD+V+E+L
Sbjct: 83 WGSVAVAPVEEVAEAIKVAGLGNSKAARIREILEVVRGRFGGYTMEPIKHWPPDRVREFL 142
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L + G+G K+ CV L L AFPVD +V R++ RLG+ PL P D+ + L +
Sbjct: 143 LSLPGVGAKTTACVMLFDLGIPAFPVDTHVARLSSRLGFAPLGMEPKDIQVVLEG----L 198
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K + YL H MI G+ C+ R PNC C + C
Sbjct: 199 LKPERYLGA-------------HVNMICHGRAVCRARRPNCKGCVVTSLC 235
>gi|86609598|ref|YP_478360.1| base excision DNA repair protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558140|gb|ABD03097.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 212
Score = 100 bits (249), Expect = 7e-18, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAV AD +++A I+ G ++ A RI+E L + E GS+ L++LR++ ++L
Sbjct: 55 WEAVLAADPADLAQVIRSGGLAHLKAARIQEILAAIQERQGSLSLDFLRDLDDAGALDFL 114
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L ++G+GLK+ CV L L PVD +V R+A RLG V + P D L + P
Sbjct: 115 LSLKGVGLKTATCVLLFGLGRDLCPVDTHVHRVANRLGLVRAKH-PDDTFAQLSPQIP-- 171
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ Y LH + GK CK R P CG CPLR C
Sbjct: 172 ---------------RGKAYSLHVNFVRLGKRICKARMPECGRCPLRPTC 206
>gi|312880248|ref|ZP_07740048.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans DSM
12260]
gi|310783539|gb|EFQ23937.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans DSM
12260]
Length = 232
Score = 98.2 bits (243), Expect = 3e-17, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DWE+V AD E+ +AI+ G N I+ L RL E G+ L LR+ PD+ +EY
Sbjct: 69 DWESVALADPGEVQEAIRIAGLANAKGPSIQAILERLREDWGAPTLVPLRSWKPDRAREY 128
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ CV + L AFPVD +V RI RLGWVP P + +++E
Sbjct: 129 LEALPGVGPKTAACVMVFDLGFPAFPVDTHVARICRRLGWVPANLPPHRIQ-RVMEETVA 187
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ Q H +I G+ C+ RSP C AC L G C
Sbjct: 188 RERFQ----------------GAHLNLIAHGRAVCRARSPRCPACVLVGVC 222
>gi|390556756|ref|ZP_10243163.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus hollandicus
Lb]
gi|390174670|emb|CCF82450.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus hollandicus
Lb]
Length = 247
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 104/218 (47%), Gaps = 36/218 (16%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ SD ++ + LRR Y T WEAVR A +++ADAI+ G A
Sbjct: 53 QHTSDVNSERAFQDLRRRYPT-------------WEAVRTAPVADVADAIRSGGLGARKA 99
Query: 1027 GRIKEFLNRLVELHGSIDLEW---LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
RI+ L+R++ HG+ D EW L+ +P + K L+ + G+G K+ CV L + A
Sbjct: 100 PRIQAALDRILS-HGTED-EWSRALKTLPLAEAKARLMALPGVGPKTAACVLLFACGRPA 157
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
PVD +V R++ RLG + +P+ H D+I+ L P + +Y H
Sbjct: 158 LPVDTHVYRVSKRLGLI--EPVVTAEQAH--------DQIEKLLNP-------EDVYSFH 200
Query: 1144 YQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASAR 1181
MI G+ C R P C CPLR C FA A +R
Sbjct: 201 LNMIAHGRQVCTARKPRCEWCPLRSRCA-FAQGKAGSR 237
>gi|269925878|ref|YP_003322501.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789538|gb|ACZ41679.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 236
Score = 94.7 bits (234), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 990 ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLR 1049
+R +D + DW+ V A E+A IK G NI A RI+ L + GS DL++L+
Sbjct: 60 DRLYDHFNG-DWKRVMEAPTEEVAQLIKSAGLSNIKAPRIQSVLKEIWSRLGSFDLQFLK 118
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
++P + KE+L I G+G K+ CV + SL PVD +V R+++RLG +P +
Sbjct: 119 DMPINAAKEWLTSINGVGPKTAACVLMFSLGLPVMPVDTHVHRVSLRLGLIPPKTNADRA 178
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
H D + + P + Y H +I G+ CK P C CPL
Sbjct: 179 H----------DILAQIVSP-------ERAYPFHINLIRHGRRVCKAPVPKCTICPLTCL 221
Query: 1170 CKHFASAVASAR 1181
C +F S R
Sbjct: 222 CVYFHQNSLSIR 233
>gi|320159427|ref|YP_004172651.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
gi|319993280|dbj|BAJ62051.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
Length = 237
Score = 93.6 bits (231), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A ++ +AI+ G N R++E L ++ G +DL +L+++P ++ + +L
Sbjct: 67 WEDVRDAPLEQVIEAIRPAGLANQKGARLQEVLRQITAERGGLDLSFLQDLPAEEARTWL 126
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L +G+G+K+ V L SL AFPVD +V R++ R+G P Q D H +L + +
Sbjct: 127 LRFKGVGVKTASIVLLFSLNKPAFPVDTHVHRVSGRIGLRPPQMSAEDAHAYLAQVF--- 183
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ H +I G+ C R P C CPLR C+
Sbjct: 184 --------------TPEQYAAGHLNLIRLGREVCHARKPACPRCPLRAVCE 220
>gi|392407188|ref|YP_006443796.1| endoIII-related endonuclease [Anaerobaculum mobile DSM 13181]
gi|390620324|gb|AFM21471.1| putative endoIII-related endonuclease [Anaerobaculum mobile DSM
13181]
Length = 253
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V A EIA I+ G N+ A RIKE L + + G L LR + + E+L
Sbjct: 88 WDEVLAATHEEIASVIRPAGLSNVKAMRIKEILKIVSDRFGDCSLRDLRRMKKGDIVEFL 147
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+V CV L L AFPVD +VGR+ R+GWV + P P +
Sbjct: 148 SSLPGVGPKTVACVLLFDLGLPAFPVDTHVGRLCKRIGWVSAKCSP-----------PEI 196
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
KI + P Y + H +I+ G+ C R P CG CPL
Sbjct: 197 QKIMESIIPEELY------WSAHLDLISHGRNICLARRPQCGECPL 236
>gi|289523004|ref|ZP_06439858.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503547|gb|EFD24711.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 255
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V E+E+A+ IK G NI A RIK L + E GS L+ L+ + +++ ++L
Sbjct: 88 WEDVLVTAETELAEVIKPAGLSNIKASRIKSVLGLITERFGSCSLKPLKGMKKEEIIDFL 147
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+V CV L L AFPVD +V R+ R+GWV + P +
Sbjct: 148 SSLPGVGPKTVACVLLFDLGIPAFPVDTHVNRLCKRIGWVSPKSTPEETQ---------- 197
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
KI + P Y + H +I+ G+ C R P C CPL
Sbjct: 198 -KIMGSVIPSDLY------WSAHLDIISHGRNICVSRRPKCTICPL 236
>gi|357419910|ref|YP_004932902.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
gi|355397376|gb|AER66805.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
Length = 244
Score = 92.0 bits (227), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V A E+ADAI+ G N+ A RIK+ L + + GS L+ L+ + +++ +L
Sbjct: 83 WQQVIDAKVEEVADAIRSAGIANVKAQRIKKILATVNGVWGSCSLKGLKRLEKEEIISFL 142
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K++ CV L L AFPVD +V R++ RLG+V LP D+
Sbjct: 143 SSLPGVGPKTIACVLLFDLGIPAFPVDTHVARLSKRLGFVGGNTLPEDI----------- 191
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
+KI L P +L H MI G+ CK +P C C L C+H S A+
Sbjct: 192 EKILEELVPEERFLGG------HLNMIAHGRAICKALNPRCQLCSLAHLCEHLNSKGAA 244
>gi|282856173|ref|ZP_06265456.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
gi|282585932|gb|EFB91217.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
Length = 234
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + IA+AIK G N A I L + E G L+ L++ P +++
Sbjct: 77 WDRVAALPQDRIAEAIKPAGICNNKAATILRVLKTVKERFGEYSLKRLKSGTPAAAWDFM 136
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
I+G+G K+ CV L AFPVD +V RI+ RLGW + P ++ L + P
Sbjct: 137 THIQGVGPKTAACVLAFDLGFPAFPVDTHVARISKRLGWADAKETPAEIQARLERLVPDG 196
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K H +I GK CK R+P CG CPLRG C
Sbjct: 197 MKCAG-----------------HLDVIQHGKNICKARAPKCGECPLRGIC 229
>gi|325968210|ref|YP_004244402.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
gi|323707413|gb|ADY00900.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
Length = 231
Score = 88.2 bits (217), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E +A+AIK G I A +I E L+R++ + DL W++++P D+ ++ LL++ G+G
Sbjct: 76 EDALANAIKPAGMHRIRARKIIE-LSRVILENYRGDLTWIKDLPLDEARKALLELPGVGE 134
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ + + L++L +AFPVD ++ RI++RLG I + Y + + W
Sbjct: 135 KTADVI-LVNLGKLAFPVDTHITRISIRLG------------IAKSRNYHEIQRA----W 177
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
R+ D E+H ++I FG+ C R+P C C R C ++ S V
Sbjct: 178 MRILTPDPSRYLEIHLKLIQFGRDICIARNPRCDMCGFREVCTYYISNV 226
>gi|374850043|dbj|BAL53042.1| HhH-GPD family protein [uncultured Chloroflexi bacterium]
Length = 235
Score = 88.2 bits (217), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAVR A E+ +AI+ G A R+++ L + + G+++L++L ++P ++ + +L
Sbjct: 70 WEAVRDAPLDEVIEAIRLAGLAQQKAPRLQQVLREITQQRGALELDFLADLPLEEARRWL 129
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ +G+G K+ V L SL AFPVD ++ R++ R+G P + + H L +P
Sbjct: 130 MQFKGVGPKTAAIVLLFSLGRPAFPVDTHIYRVSGRIGLRPARMSVEEAHAFLEALFP-- 187
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+T Y +H +I G+ C+ R P C CP+R C +
Sbjct: 188 ---------------PETYYAVHLNLIRLGREVCQARRPQCERCPIREWCDY 224
>gi|269792590|ref|YP_003317494.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100225|gb|ACZ19212.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 232
Score = 87.0 bits (214), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE+V A ++ AI+ G A RIKE L ++ E G++ L +R+ D+V+ +L
Sbjct: 75 WESVMEAPVEDLEGAIRVAGLGASKARRIKEVLYKVKETLGTLSLGAMRSWRRDEVEAFL 134
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+V CV + L AFPVD +VGR++VR+G P P ++ + L
Sbjct: 135 STLPGVGPKTVACVLVFDLGIPAFPVDTHVGRLSVRMGLAPGGMKPWEIQLRLES----- 189
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+D + H +I G+ CK + P CG CPL G C
Sbjct: 190 ------------LIDPERYLGAHVNLIFHGRRICKAQRPRCGDCPLLGTC 227
>gi|116754221|ref|YP_843339.1| HhH-GPD family protein [Methanosaeta thermophila PT]
gi|116665672|gb|ABK14699.1| HhH-GPD family protein [Methanosaeta thermophila PT]
Length = 219
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 23/169 (13%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E EIADAI+ G +I A RIK L RL + GS+DL L+ + + + YL I G+
Sbjct: 65 ASEEEIADAIRPGGLADIKAARIKGALERLRDDFGSVDLSPLKRMSAVEARNYLKSIPGI 124
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + L A PVD +V R++ R+G VP E +++ Q
Sbjct: 125 GPKTASVLMLFGFGMSAMPVDTHVYRVSRRMGLVP--------------ENASIEETQRI 170
Query: 1127 L---WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L P Y+ LH +I G++ CK R+P C C L+G C++
Sbjct: 171 LEEITPHEKYIS------LHINLIRHGRLVCKARNPLCKKCELKGLCRY 213
>gi|167997017|ref|XP_001751215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 85.1 bits (209), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V AD ++ DAI+ G A RI L+ + GSI LE++R++ D++K L
Sbjct: 96 WEEVHAADPKKVEDAIRCGGLAETKAKRIINILDTIFTERGSICLEYVRSMNVDQIKAEL 155
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + L+ FPVD +V R++ LGWVP ++H+ P
Sbjct: 156 SRFKGVGPKTVACVLMFHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVP-- 213
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC-----------GACPL 1166
D+++ Y+LH ++T G KR P C G CPL
Sbjct: 214 DEVK---------------YDLHCLLVTHG-----KRCPRCAKGGRAQTAPDGPCPL 250
>gi|298242385|ref|ZP_06966192.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297555439|gb|EFH89303.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 84.0 bits (206), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A E+ + I + A RI+ + ++ E G+++L++L ++P ++ +L
Sbjct: 81 WEGVRDAPTKEVEETIANVNFPEVKAPRIQAIMRQITEERGNLNLDFLCSLPVEEAAAWL 140
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+ CV L S + PVD++V R ++R+G + + + H L P
Sbjct: 141 NRFQGIGPKTTACVLLFSCKMPILPVDIHVHRTSIRIGLIGNKVTADNAHTLLQALLPN- 199
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
D +T+Y H ++ G+ C P C CPL C ++ + V
Sbjct: 200 --------------DARTIYNFHKGLLRLGQRICVYERPRCNQCPLTKLCDYYRTVV 242
>gi|288575002|ref|ZP_06393359.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570743|gb|EFC92300.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 238
Score = 84.0 bits (206), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 990 ERSHDKMDSVD--WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEW 1047
+R+ DK+ ++ WE V E+ADAI+ G N+ AGR+ + L + + G L
Sbjct: 67 DRAFDKLKTLYPLWEDVASVTPDELADAIRVAGIANVKAGRMLDVLKIIHDELGEYGLTG 126
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPG 1107
L+ D V+ +L + G+G K+ CV + + AFPVD +V R R+ WVP P
Sbjct: 127 LKYRDHDGVRAFLEGLPGVGPKTAACVLVFDMDIPAFPVDTHVARFCRRMEWVPRSATPV 186
Query: 1108 DLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
+ ++ K P D++ H +I+ GK CK R P C CPL
Sbjct: 187 RIQEYMEKIVP----------------DERK-KGAHLNIISHGKSICKARKPICQRCPLI 229
Query: 1168 GEC 1170
C
Sbjct: 230 DLC 232
>gi|325283930|ref|YP_004256471.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
gi|324315739|gb|ADY26854.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
Length = 248
Score = 83.6 bits (205), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW+A+ A ++A AI+ + A RI+ L + E G DL++L +P + +
Sbjct: 79 DWDAIVAAPVEQVAHAIRRSNYPDQKAPRIQATLRAIREKRGGYDLDFLAELPVAEALSW 138
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L D+ G+G+K+ V L + FPVD +V RI R+G +P G+ H
Sbjct: 139 LTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRINTRVGTIPKM---GEQTAH------- 188
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ + L P D LY+LH ++ G+ C +P CG C LR C +A
Sbjct: 189 --RALLTLLPS----DPPLLYDLHVNLLKHGQQVCTWNNPKCGRCILRERCDAYA 237
>gi|195645374|gb|ACG42155.1| ROS1 protein [Zea mays]
gi|219887377|gb|ACL54063.1| unknown [Zea mays]
Length = 276
Score = 83.6 bits (205), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G I LE+LR + D+VK+ L
Sbjct: 107 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 166
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + LQ FPVD +V RI +GWVP +IHL + P
Sbjct: 167 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIP-- 224
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMI--TFGKIFCKKRSPNCGACPLRGEC 1170
D ++ D L+ H ++ K+ KR + ACPL G C
Sbjct: 225 DDLK---------FDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 267
>gi|378733828|gb|EHY60287.1| endonuclease III [Exophiala dermatitidis NIH/UT8656]
Length = 442
Score = 83.6 bits (205), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 991 RSHDKMDSV-----DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL 1045
R+ MD V WEA+ ++++ +AIK G + + I LN++ E +G L
Sbjct: 243 RAKLNMDKVYGGSDKWEAIAAGGQAKLQEAIKSGGLSAVKSKVIISILNQVYEKYGVYSL 302
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
+ L + + +L +G+G K+ CV L LQ +F VD +V RI LGW P
Sbjct: 303 DHLHSASSEDAMREMLSFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLLGWRPKSAS 362
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGA 1163
+ + HL + P DK Y LH ++T GK CK N G
Sbjct: 363 RDETYAHLDSKIPDEDK-----------------YGLHILLVTHGKRCDECKAGGKNLGR 405
Query: 1164 CPLR 1167
C LR
Sbjct: 406 CELR 409
>gi|386855256|ref|YP_006259433.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|379998785|gb|AFD23975.1| Endonuclease III [Deinococcus gobiensis I-0]
Length = 223
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 16/192 (8%)
Query: 982 RRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1041
R ++ E H+ + DW + A +A AI+ A RI+E L R+ + G
Sbjct: 32 RTTHADEEAAYHELRELGDWADIIAAPTEVVAHAIRRSNYPESKAPRIQETLRRIRDAPG 91
Query: 1042 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
DL++LR++P ++L D+ G+G+K+ V L + FPVD +V RI +R+G +P
Sbjct: 92 GYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYHRPVFPVDTHVFRINIRVGTIP 151
Query: 1102 LQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ ++ L D LYELH +++ G+ C +P C
Sbjct: 152 ----------------QMTEQAAHRALLALLPPDPPFLYELHVNLLSHGRQVCTWTAPKC 195
Query: 1162 GACPLRGECKHF 1173
G C +R C +
Sbjct: 196 GECFIRERCDAY 207
>gi|297815970|ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321706|gb|EFH52127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 294
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+WE V A+ I AI+ G A IK LNRL G + LE+LR + ++VK
Sbjct: 127 NWEDVLAAESKSIESAIRCGGLAPKKAVCIKNILNRLQTERGVLCLEYLRGLSVEEVKTE 186
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L +G+G K+V CV + +LQH FPVD +V IA LGWVP ++HL + P
Sbjct: 187 LSHFKGIGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHLNRRIPD 246
Query: 1120 MDKIQ----MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
K +Y +LC +KT+ K K R + CPL G
Sbjct: 247 ELKFDLNCLLYTHGKLCSNCKKTV----------AKPKAKARVASPDECPLVG 289
>gi|255074589|ref|XP_002500969.1| predicted protein [Micromonas sp. RCC299]
gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 216
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A +++ DAI+ G + RI+ LN L E G +E+LR++ D VK L
Sbjct: 81 WEQVRTAKPAKVEDAIRCGGLAEVKVSRIQVILNTLKEERGECSMEYLRDMSDDDVKAEL 140
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + L+ FPVD +V +IA LGW+P D + HL + P
Sbjct: 141 SRFKGVGPKTVSCVLMFCLKRPDFPVDTHVWKIAKDLGWIPKGAGREDAYEHLNRRVP-- 198
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1153
++LH ++ GK++
Sbjct: 199 ---------------DDCKFDLHVLLVEHGKVY 216
>gi|224133424|ref|XP_002321564.1| predicted protein [Populus trichocarpa]
gi|222868560|gb|EEF05691.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 36/184 (19%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V A+ I DAI+ G A I+ L+ L+E G + LE+LR++P ++K L
Sbjct: 144 WENVLAAESKFIEDAIRCGGLAPTKAACIRNILSSLMEKKGRLCLEYLRDLPVAEIKAEL 203
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + +LQ FPVD +V IA +GWVP PV
Sbjct: 204 SHFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKAIGWVP----------------PVA 247
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQ----MITFGKIFCKKRSPNCG----------ACPL 1166
D+ + YL +L+ + EL + + T GK+ C+K + G +CPL
Sbjct: 248 DRNKTYL-----HLNHRIPKELKFDLNCLLYTHGKL-CRKCTKKSGSQQRKETHDDSCPL 301
Query: 1167 RGEC 1170
C
Sbjct: 302 LNYC 305
>gi|448684914|ref|ZP_21693001.1| endonuclease III [Haloarcula japonica DSM 6131]
gi|445782845|gb|EMA33686.1| endonuclease III [Haloarcula japonica DSM 6131]
Length = 277
Score = 82.8 bits (203), Expect = 2e-12, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 101/231 (43%), Gaps = 25/231 (10%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEE-RSHDKMDSVDWEAVRCADESEIADAIKERGQQNII 1025
+ SD Q D L R Y EE S DS A+ AD+ E+A+ I G N
Sbjct: 64 QNTSDKASQPAHDELMRRYGGDEEANSEGDTDSDLARALADADQPELAETISSAGLYNQK 123
Query: 1026 AGRIKEFLNRLVELHG--SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHI 1082
+ RI R+ E +G S E++R P+ V+ LLD+ G+G K+ +CV L + +
Sbjct: 124 SERIIALAQRICEEYGGESGFDEFVREEDPEAVRSTLLDMNGVGPKTADCVLLFAGGRGG 183
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
FPVD +V RIA R+G P + +L ++ P +K +
Sbjct: 184 VFPVDTHVHRIARRMGLAPADADHETVREYLERDVPA----------------EKCGFG- 226
Query: 1143 HYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALPGPSE 1189
H MI FG+ +C R P C ACPL G C AS P +E
Sbjct: 227 HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQIGVYPASGEVVDPAEAE 277
>gi|242095290|ref|XP_002438135.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
gi|241916358|gb|EER89502.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
Length = 279
Score = 82.4 bits (202), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G I LE+LR + D+VK+ L
Sbjct: 109 WDQVVDEEGKRLEDAIRCGGLATTKAARIRAMLRDVRERRGKICLEYLRELSVDEVKKEL 168
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + LQ FPVD +V RI +GWVP +IHL + P
Sbjct: 169 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIP-- 226
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMI--TFGKIFCKKRSPNCGACPLRGEC 1170
D ++ D L+ H ++ K+ K + ACPL G C
Sbjct: 227 DDLK---------FDLNCLFVTHGKLCQSCTKKVVSDKSKNSNAACPLAGYC 269
>gi|413944180|gb|AFW76829.1| ROS1 protein [Zea mays]
Length = 340
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G I LE+LR + D+VK+ L
Sbjct: 171 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 230
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + LQ FPVD +V RI +GWVP +IHL + P
Sbjct: 231 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIP-- 288
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMI--TFGKIFCKKRSPNCGACPLRGEC 1170
D ++ D L+ H ++ K+ KR + ACPL G C
Sbjct: 289 DDLK---------FDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 331
>gi|15807425|ref|NP_296158.1| endonuclease III [Deinococcus radiodurans R1]
gi|6460251|gb|AAF11977.1|AE002073_7 endonuclease III [Deinococcus radiodurans R1]
Length = 259
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 17/196 (8%)
Query: 980 LLRRIYSTGEERSHDKMDSV-DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE 1038
L +R EE ++ ++ ++ DW+A+ A +A AI+ A RI+E L R+
Sbjct: 58 LSQRTTHADEEAAYQELRTLGDWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKA 117
Query: 1039 LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
G DL++LR++P ++L D+ G+G+K+ V L + FPVD +V R++ R+G
Sbjct: 118 APGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVG 177
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
+P + ++ L D LYELH ++ G+ C
Sbjct: 178 VIPR----------------MGEQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTR 221
Query: 1159 PNCGACPLRGECKHFA 1174
P CG C LR C +A
Sbjct: 222 PKCGKCILRERCDAYA 237
>gi|380494482|emb|CCF33119.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 385
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 980 LLRRIYS-----TGEERSHDKMDSV-----DWEAVRCADESEIADAIKERGQQNIIAGRI 1029
L+R I S T R+ MD+V +WE + S++ +AIK G + + I
Sbjct: 183 LVRTILSQNTSDTNSTRAKRSMDAVYGGSDEWERIVDGGVSKLQEAIKCGGLSQVKSKVI 242
Query: 1030 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
LN++ E +GS L+ L N + + L+ +G+G K+ CV L LQ +F VD +
Sbjct: 243 IGILNQVREKYGSYSLDHLFNASNEDAMQELISFQGVGPKTASCVLLFCLQRESFAVDTH 302
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
V RI +GW P + H HL P DK Y LH ++
Sbjct: 303 VWRITGLMGWRPRSASRDETHAHLDVRIPDEDK-----------------YGLHILLVKH 345
Query: 1150 GKIF--CKKRSPNCGACPLR 1167
GK+ CK + G C LR
Sbjct: 346 GKVCAECKAGGKSVGKCELR 365
>gi|326436846|gb|EGD82416.1| hypothetical protein PTSG_03059 [Salpingoeca sp. ATCC 50818]
Length = 495
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V AD + AI+ G + RIK L+ L HG + LE+LR +P VKE L
Sbjct: 271 WEDVHSADVGALEAAIRSAGLAQTKSRRIKSILDTLHAEHGKLSLEYLRELPSHTVKEQL 330
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+G+G K++ C+ L ++Q VD +V R+A R GWVP
Sbjct: 331 ARFKGVGPKTISCLLLFAMQRPDMAVDTHVFRLAKRAGWVP 371
>gi|310800884|gb|EFQ35777.1| base excision DNA repair protein [Glomerella graminicola M1.001]
Length = 389
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 980 LLRRIYS-----TGEERSHDKMDSV-----DWEAVRCADESEIADAIKERGQQNIIAGRI 1029
L+R I S T R+ MD+V +WE + ++ +AIK G + + I
Sbjct: 187 LVRTILSQNTSDTNSTRAKRSMDAVYGGSDEWEKIVEGGVHKLQEAIKCGGLSQVKSKVI 246
Query: 1030 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
LN++ E +GS L+ L N ++ + L+ +G+G K+ CV L LQ +F VD +
Sbjct: 247 IGILNQVKEKYGSYTLDHLFNATNEEAMQELISFQGVGPKTASCVLLFCLQRESFAVDTH 306
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
V RI LGW P + H HL P DK Y LH ++
Sbjct: 307 VWRITGLLGWRPKSASRDETHAHLDVRIPDEDK-----------------YGLHILLVKH 349
Query: 1150 GKIF--CKKRSPNCGACPLR 1167
GK+ CK + G C LR
Sbjct: 350 GKVCDECKAGGKSIGKCELR 369
>gi|384248095|gb|EIE21580.1| DNA glycosylase, partial [Coccomyxa subellipsoidea C-169]
Length = 257
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 80/178 (44%), Gaps = 35/178 (19%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V A ++ +AI+ G +I A RIK L L+E G I +E+LR + D++K L
Sbjct: 95 WEDVLRAPPGKMEEAIRMGGLADIKAERIKAILATLLEERGKICMEYLREMSDDEIKAEL 154
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + L FPVD +V RI+ LGWVP + + HL P
Sbjct: 155 F--KGVGKKTVACVLMFCLAREEFPVDTHVWRISKSLGWVPAKATRDAAYEHLNLHVPA- 211
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC-----------GACPLR 1167
Y+LH M+ G KR P C G CPLR
Sbjct: 212 ----------------DVRYDLHVLMVEHG-----KRCPRCASNGKPRKESHGDCPLR 248
>gi|303272857|ref|XP_003055790.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463764|gb|EEH61042.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 249
Score = 81.6 bits (200), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE +R A +E+ AIK G I RIK LN LVE G+ +E+LR++ D VK L
Sbjct: 114 WETIRAAPSAEVEAAIKCGGLAEIKTSRIKVILNTLVEERGAPCMEYLRDMSDDDVKSEL 173
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K++ CV + L+ FPVD +V +IA+ LGWVP + HL + P
Sbjct: 174 SRFKGVGPKTIACVLVFCLRR--FPVDAHVWKIAMALGWVPKSASRDAAYEHLNRRVPDA 231
Query: 1121 DKIQMYL 1127
K+ +++
Sbjct: 232 CKLDLHV 238
>gi|18408516|ref|NP_566893.1| HhH-GPD base excision DNA repair protein-related protein [Arabidopsis
thaliana]
gi|332644814|gb|AEE78335.1| HhH-GPD base excision DNA repair protein-related protein [Arabidopsis
thaliana]
Length = 293
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V A+ I +AI+ G A IK LNRL G + LE+LR + ++VK L
Sbjct: 128 WDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTEL 187
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + +LQH FPVD +V IA LGWVP ++HL ++ P
Sbjct: 188 SHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHLNRKIP-- 245
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGA-------CPLRG 1168
D+++ ++L+ + T GKI CKK A CPL G
Sbjct: 246 DELK---------------FDLNCLLYTHGKICSNCKKNVAKPKAKVASPDDCPLVG 287
>gi|255540783|ref|XP_002511456.1| Endonuclease III, putative [Ricinus communis]
gi|223550571|gb|EEF52058.1| Endonuclease III, putative [Ricinus communis]
Length = 291
Score = 81.3 bits (199), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K D W+ V A+ I +AI+ G A IK LN L+E G I LE+LR++ D
Sbjct: 112 KSDFPTWQDVLAAEPKWIENAIRCGGLAPAKASCIKNILNCLLEKKGKICLEYLRDMSVD 171
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
++K L +G+G K+V CV + LQ FPVD +V IA LGWVP ++HL
Sbjct: 172 EIKAELSQFKGVGPKTVACVLMFHLQQEDFPVDTHVFEIAKALGWVPEVADRNKTYLHLN 231
Query: 1115 KEYPVMDKIQ----MYLWPRLC 1132
+ P K +Y +LC
Sbjct: 232 QRIPNELKFDLNCLLYTHGKLC 253
>gi|357477261|ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
gi|355509971|gb|AES91113.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
Length = 280
Score = 80.9 bits (198), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 980 LLRRIYS--TGEERSHDKMDSVD-----WEAVRCADESEIADAIKERGQQNIIAGRIKEF 1032
L+R I S T E S+ S+ WE V A+ E+ +AI+ G A IK
Sbjct: 87 LVRTILSQNTTEANSNKAFASLKSLFPTWEHVHGAESKELENAIRCGGLAPTKAKCIKNL 146
Query: 1033 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
L+ L+E G + LE+LR++ D+VK L +G+G K+V CV + +LQ FPVD ++
Sbjct: 147 LSCLLERKGKMCLEYLRDLSVDEVKAELSLFKGIGPKTVSCVLMFNLQLDDFPVDTHIFE 206
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ----MYLWPRLC 1132
IA +GWVP ++HL + P K +Y +LC
Sbjct: 207 IAKTMGWVPAAADRNKTYLHLNQRIPDELKFDLNCLLYTHGKLC 250
>gi|307596439|ref|YP_003902756.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
gi|307551640|gb|ADN51705.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
Length = 232
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E +A+AIK G I A +I E ++E +G DL W+ + P D+ ++ LL++ G+G
Sbjct: 76 EDALANAIKPAGMHRIRARKIIELSRVILERYGG-DLTWIVDSPLDEARKALLELPGVGE 134
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ + + L++L FPVD ++ RI++RLG V + Y + K W
Sbjct: 135 KTADVI-LVNLGKPTFPVDTHITRISIRLGIVKS------------RNYREIQKA----W 177
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
+ D E+H ++I FG+ C+ R+P C C + C ++ S V
Sbjct: 178 MGILTPDPSRYLEVHLKLIQFGRDVCRARNPRCDMCGFKEVCNYYMSNV 226
>gi|330508003|ref|YP_004384431.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosaeta concilii GP6]
gi|328928811|gb|AEB68613.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Methanosaeta
concilii GP6]
Length = 224
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K D ++E++ A E+AD I+E G NI A RI+E L + G++D+ +L + D
Sbjct: 57 KRDYGNYESLLLAPTEEVADCIREGGLANIKALRIQEVLLSIKRDRGAMDIGFLEGMDKD 116
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ YLLD+ G+G K+ V L + PVD +V R++ RLG VP P
Sbjct: 117 EAMSYLLDLPGVGPKTASIVLLFAFGMPFMPVDTHVFRVSQRLGLVPENLSPE------- 169
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K +++I P CY + H +I G+ C+ R P C L+ C F
Sbjct: 170 KAQKALERI----VPPECY------HSFHLNLIRHGRQICRARGPKHEECALKECCDCF 218
>gi|320333147|ref|YP_004169858.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
gi|319754436|gb|ADV66193.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
Length = 258
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 989 EERSHDKMDSV-DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEW 1047
EE ++ ++ + DW+A+ A ++A AI+ + A RI+ L + G+ DL +
Sbjct: 60 EETAYQELVKIGDWDAIAEAPVEQVAHAIRASNYPEVKAPRIQATLKAICAQRGNYDLSF 119
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPG 1107
L ++P + ++L D+ G+G+K+ V L + FPVD +V RI R+G +P G
Sbjct: 120 LVDLPHEDGLKWLTDLPGVGVKTASLVLLFNFSKPVFPVDTHVHRITTRVGAIPRM---G 176
Query: 1108 DLHIH--LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACP 1165
+ H LLK L D LYELH ++ G+ C P C C
Sbjct: 177 EAVAHKALLK---------------LLAPDPPFLYELHINLLKHGQQVCTFSRPRCPKCV 221
Query: 1166 LRGECKHFA 1174
LR C A
Sbjct: 222 LRDLCDAHA 230
>gi|294102031|ref|YP_003553889.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium colombiense
DSM 12261]
gi|293617011|gb|ADE57165.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium colombiense
DSM 12261]
Length = 233
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 30/204 (14%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ +D + ++ LR++Y T WE V AD I +AI+ G +I +
Sbjct: 51 QNTNDRNRDRAYESLRQLYPT-------------WEEVAQADTERIKEAIRVAGLSDIKS 97
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
RIKE L + + GS ++ LR ++ + +L + G+G K+V CV L L + AFPV
Sbjct: 98 KRIKEILVAVQDAFGSYSIKELRKRGREQARAFLFKLPGVGAKTVACVLLFDLGYPAFPV 157
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D ++ R + R+GW + P ++ L + P + YL H +
Sbjct: 158 DTHIHRFSKRIGWAHDRCKPEEIEGMLEQVVPE----ERYLGG-------------HINI 200
Query: 1147 ITFGKIFCKKRSPNCGACPLRGEC 1170
IT G+ C R P C C + C
Sbjct: 201 ITHGRNICLARQPRCDKCSVNDLC 224
>gi|413945491|gb|AFW78140.1| hypothetical protein ZEAMMB73_391413 [Zea mays]
Length = 78
Score = 80.5 bits (197), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 1410 RGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLF 1461
RG FPLNGTYFQVNEVFADH +SH+PI+V R + NL+R +V FG+S T+F
Sbjct: 2 RGSFPLNGTYFQVNEVFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIF 53
>gi|193215044|ref|YP_001996243.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
gi|193088521|gb|ACF13796.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
Length = 227
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+W + A +EIA +I+ G N A RIK L LV G++ L++L + V E+
Sbjct: 68 EWAILLDAPVAEIAKSIEIGGLANQKAQRIKAILQELVRTQGALSLDFLADFSDKAVLEF 127
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L +G+G+K+ CV L L PVD ++ RI RLG +
Sbjct: 128 LTSFKGVGVKTAGCVLLFGLGRDVCPVDTHIHRILNRLGIFSTKH--------------- 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
D+ L P ++ Y LH +I GK C R PNC C L +C+ FA A
Sbjct: 173 ADETFAELQP---HIPTGKAYSLHVNLIRHGKRVCCARKPNCQTCMLAEDCE-FARA 225
>gi|307108459|gb|EFN56699.1| hypothetical protein CHLNCDRAFT_11543, partial [Chlorella variabilis]
Length = 185
Score = 79.7 bits (195), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A + +ADAI+ G +I AGRI+ L+ L G LE LR +P K L
Sbjct: 38 WEGVRTAPLAAVADAIRVGGLADIKAGRIQAILSTLAAERGECSLEHLRGLPAAAAKAEL 97
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+ CV L +L+ F VD +V I+ LGWVP+ + H+ + P
Sbjct: 98 SRFKGVGKKTAACVLLFALELPEFAVDTHVWEISKALGWVPVNATRDQAYDHMNELVP-- 155
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
D+++ Y+LH ++ GK C AC G K
Sbjct: 156 DELK---------------YDLHVLLVRHGK--------QCPACAKAGSAKQ 184
>gi|258406277|ref|YP_003199019.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
gi|257798504|gb|ACV69441.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
Length = 218
Score = 79.3 bits (194), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D E+A I+ G + AGRIK FL R E D L+ +P +++E LL + G+G
Sbjct: 70 DTEELAALIRPAGYYRVKAGRIKNFL-RFFEHEAGFDFTVLQALPTPEIRERLLGVNGIG 128
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + L +L F VD RI R G +P + DL + + P
Sbjct: 129 PETADSIALYALDKPTFVVDTYTARIFGRHGQIPEEISYADLQAYFTEALPE-------- 180
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
D E H Q++ GK +CKK+ P C CPL
Sbjct: 181 -------DTALFNEFHAQIVRVGKHWCKKKQPQCHRCPL 212
>gi|225457138|ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vinifera]
Length = 310
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V AD I +AI+ G A IK+ L+ L+E G + LE+LR++ D++K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + LQ FPVD +V +I +GWVP ++HL + P
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHLNRRIPDE 258
Query: 1121 DKIQ----MYLWPRLCY--------LDQKTLYELHYQMITFGKIFCKKRSPN 1160
K ++ +LC+ +K +E ++T+ K SPN
Sbjct: 259 LKFDLNCLLFTHGKLCHECTQKGANQKRKESHESSCPLLTYCGDMFKSSSPN 310
>gi|392966115|ref|ZP_10331534.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
gi|387845179|emb|CCH53580.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
Length = 255
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 19/194 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A ++ DAIK + A I+ L ++ G + +++LR++ + ++L
Sbjct: 66 WEQVRDAPLPDLIDAIKTANYPEVKAPYIQNVLAHIIRERGDVSIDFLRDLSTEAAMKWL 125
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
D+ G+GLK+ + L + + PVD +V R+ R+G + + + K Y ++
Sbjct: 126 TDLPGIGLKTATLLLLFNFRKPVLPVDTHVHRVTQRVGLIGPK-------VSAEKAYAML 178
Query: 1121 DKIQMYLWPRLCYL--DQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
L YL D K L+ H G+ C +P C C LR C ++ S
Sbjct: 179 ----------LAYLPQDAKDLFNFHKHFYWHGQRICTWYTPKCHECVLRDMCDYYQSGGT 228
Query: 1179 SARFALPGPSEKGI 1192
+ P P K +
Sbjct: 229 MMLSSTPVPKSKRV 242
>gi|449015802|dbj|BAM79204.1| similar to endonuclease III [Cyanidioschyzon merolae strain 10D]
Length = 276
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL--------VELHGSIDLEWLRNV 1051
DW V A EI + I+ G A I++ L L + + LE+LRNV
Sbjct: 101 DWADVLHAPVGEIEETIRIGGLARTKAQHIQDILRELEHNAATTGTDTDWTQGLEFLRNV 160
Query: 1052 PPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
P +V EYL G+G K+ CV + +L+ +FPVD ++ R+A RLGWVP + H
Sbjct: 161 PTAQVMEYLTRYPGVGPKTAACVAMFTLERDDSFPVDTHIFRLAKRLGWVP------NGH 214
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
+ + + I L Y +H MI G+ C R P C C L G
Sbjct: 215 TREQAQVDLENLIPSTLH-----------YPMHILMIEHGRKVCTARGPRCQHCKLAG 261
>gi|260655074|ref|ZP_05860562.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|424844920|ref|ZP_18269531.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
gi|260630185|gb|EEX48379.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|363986358|gb|EHM13188.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
Length = 234
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W ++E+ I+ G + + I L +L G L LR P + ++
Sbjct: 77 WADAAALSQAELISLIRPAGLCDSKSATIIRVLGAAKDLTGQYSLGLLRKKKPAEAWNFM 136
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
I+G+G+K+ CV + L AFPVD +V R R+GW P + P + + P
Sbjct: 137 TSIKGVGVKTAACVMVFDLGFPAFPVDTHVARFCRRMGWAPEKASPAAIQEMMEGLVPDS 196
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K H +IT G+ CK R P CG C LRG C
Sbjct: 197 RKAGA-----------------HLNIITHGRRVCKARGPLCGDCLLRGLC 229
>gi|383762204|ref|YP_005441186.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382472|dbj|BAL99288.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 239
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW+AVR A I +AI+ G N A I L R+ GS DL L P ++ Y
Sbjct: 69 DWDAVRTAPLDAIKEAIRPAGMYNQKAPAIVATLERIKADWGSYDLRPLAQKPVEEAFTY 128
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ V L AFPVD ++ RI+ R+G + Y +
Sbjct: 129 LTSLPGVGHKTASIVILFCFNGAAFPVDTHIQRISQRVG----------ISRRRADAYTI 178
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+W L ++ Y LH +I G+ C+ +P C CPL+ C ++
Sbjct: 179 KR-----IWESL--IEPSAFYALHINLIRHGRRTCQALTPRCELCPLQSMCDYY 225
>gi|297733838|emb|CBI15085.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 26/179 (14%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V AD I +AI+ G A IK+ L+ L+E G + LE+LR++ D++K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + LQ FPVD +V +I +GWVP ++HL + P
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHLNRRIP-- 256
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNC-------GACPLRGEC 1170
D+++ ++L+ + T GK+ C ++ N +CPL C
Sbjct: 257 DELK---------------FDLNCLLFTHGKLCHECTQKGANQKRKESHESSCPLLTYC 300
>gi|55378639|ref|YP_136489.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|55231364|gb|AAV46783.1| endonuclease III [Haloarcula marismortui ATCC 43049]
Length = 278
Score = 77.8 bits (190), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEE-RSHDKMDSVDW-EAVRCADESEIADAIKERGQQNI 1024
+ SD Q D L Y GE+ S +DS D A+ AD+ E+A+ I G N
Sbjct: 64 QNTSDKASQPAHDDLMARYGGGEDANSEGDIDSTDLARALADADQPELAETISSAGLYNQ 123
Query: 1025 IAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQ 1080
+ RI R+ E +G D ++R+ P+ V+ LLD+ G+G K+ +CV L + +
Sbjct: 124 KSERIIALAQRICEEYGGEAGFD-AFVRDSDPEAVRSTLLDMNGVGPKTADCVLLFAGGR 182
Query: 1081 HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY 1140
FPVD +V RIA R+G P + +L ++ P C
Sbjct: 183 GGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVPAAK----------CGFG----- 227
Query: 1141 ELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
H +I FG+ +C R P C ACPL G C
Sbjct: 228 --HTAIIQFGREYCSARKPACLDDPDACPLAGHC 259
>gi|357124677|ref|XP_003564024.1| PREDICTED: endonuclease III-like [Brachypodium distachyon]
Length = 277
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G+I LE+LR + D+VK L
Sbjct: 109 WDQVVDEEGKGLEDAIRCGGLAATKAARIRAMLRDVRERRGAICLEYLRELSVDEVKREL 168
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K++ CV + LQ FPVD +V RI +GWVP +IHL K+ P
Sbjct: 169 SQFKGIGPKTMACVLMFYLQKDDFPVDTHVLRITKAIGWVPSTATREKAYIHLNKKIP-- 226
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA---------CPLRGEC 1170
D ++ ++L+ +T GK+ C + GA CPL C
Sbjct: 227 DDLK---------------FDLNCLFVTHGKL-CPSCTKKLGAQKLKVANATCPLASYC 269
>gi|443896168|dbj|GAC73512.1| nitrogen permease regulator NLRG/NPR2, partial [Pseudozyma antarctica
T-34]
Length = 979
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
D +WEA+ A ESE+ +AI+ G N A IK L++ +E HG + L+ L
Sbjct: 528 DHFGRRNWEAIHAAPESELVEAIRCGGLANNKARTIKGILSQTMEKHGKLSLDHLHTATD 587
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
D++ + L+ G+G K CV + + VD +V R+ LGWVP + + HL
Sbjct: 588 DEIMQELVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKSLGWVPEKANRDQTYYHL 647
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA 1163
+ P K Y LH +I G KR NC A
Sbjct: 648 HERVPGHLK-----------------YPLHVLLIQHG-----KRCANCSA 675
>gi|448637456|ref|ZP_21675694.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|445764303|gb|EMA15458.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 278
Score = 76.6 bits (187), Expect = 1e-10, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEE-RSHDKMDSVDW-EAVRCADESEIADAIKERGQQNI 1024
+ SD Q D L Y GE+ S ++S D A+ AD+ E+A+ I G N
Sbjct: 64 QNTSDKASQPAHDDLMARYGGGEDTNSEGNINSTDLARALADADQPELAETISSAGLYNQ 123
Query: 1025 IAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQ 1080
+ RI R+ E +G D ++R+ +KV+ LLD+ G+G K+ +CV L + +
Sbjct: 124 KSERIIALAQRICEEYGGEAGFD-AFVRDSDSEKVRSTLLDMNGVGPKTADCVLLFAGGR 182
Query: 1081 HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY 1140
FPVD +V RIA R+G P + +L ++ P C
Sbjct: 183 GGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVPAAK----------CGFG----- 227
Query: 1141 ELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
H MI FG+ +C R P C ACPL G C
Sbjct: 228 --HTAMIQFGREYCSARKPACLDDPDACPLAGHC 259
>gi|448681086|ref|ZP_21691232.1| endonuclease III [Haloarcula argentinensis DSM 12282]
gi|445768144|gb|EMA19231.1| endonuclease III [Haloarcula argentinensis DSM 12282]
Length = 277
Score = 76.3 bits (186), Expect = 1e-10, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 25/227 (11%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHD-KMDSVDWEAVRCADESEIADAIKERGQQNII 1025
+ SD Q D L Y E S + DS A+ AD+ E+A+ I G N
Sbjct: 64 QNTSDKASQPAHDELMARYGGDENASSEGDTDSDLARALADADQPELAETISSAGLYNQK 123
Query: 1026 AGRIKEFLNRLVELHG--SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHI 1082
+ RI R+ E +G S E++R P++V+ LLD+ G+G K+ +CV L + +
Sbjct: 124 SERIIALAQRICEEYGGESGFDEFVRESDPEEVRSTLLDMNGVGPKTADCVLLFAGGRGG 183
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
FPVD +V RIA R+G P + +L ++ P +K +
Sbjct: 184 VFPVDTHVHRIARRMGLAPADADHETVREYLERDVPA----------------EKCGFG- 226
Query: 1143 HYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALP 1185
H MI FG+ +C R P C ACPL G C ++ A P
Sbjct: 227 HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPSTGEVADP 273
>gi|374857375|dbj|BAL60228.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
++E++ A ++A+AIK G A RI+E L R+ G DL +L+++ +
Sbjct: 60 NYESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVRE 119
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL +G+G K+ V SL FPVD ++ RI RLG V + P D+ L V
Sbjct: 120 LLKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDPHDVMNAL-----V 174
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D+++ Y+LH +I G+ CK R P C C + C
Sbjct: 175 PDRLK---------------YQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|302680965|ref|XP_003030164.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
gi|300103855|gb|EFI95261.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
Length = 317
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 986 STGEERSHDK-MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
S+G +RS D ++ A+ A S +ADAI+ G N A I+ L + HGS
Sbjct: 114 SSGAKRSLDAAFGRNNFAAIADAPTSAVADAIRSGGLANKKAATIQRVLRDIKAKHGSYS 173
Query: 1045 LEWLRNVPPD-KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
L+ L +V D +V L+ +G+G K+ CV L L +F VD +V R++ LGWVP
Sbjct: 174 LQHLADVCADAEVMRELMAYDGVGPKTASCVLLFCLGRESFAVDTHVFRLSKLLGWVP-- 231
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT----LYELHYQMITFGKIFCKKRSP 1159
P D++Q +LD + Y LH MI G+I ++
Sbjct: 232 --------------PKADRVQTQ-----AHLDLRIPGDRKYGLHVLMIDHGRICTGCKTK 272
Query: 1160 NCGACPLR 1167
G+C L+
Sbjct: 273 GKGSCILK 280
>gi|326510563|dbj|BAJ87498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G+I LE+LR++ D+VK L
Sbjct: 114 WDQVVDEEGMGLEDAIRCGGLAATKAARIRAMLRGVREKRGAICLEYLRDLSVDEVKREL 173
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+G+G K+V CV + LQ FPVD +V RI LGWVP +IH+ + P
Sbjct: 174 SQFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKALGWVPPTATREKAYIHMNNKIP 231
>gi|374852558|dbj|BAL55489.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
+E++ A ++A+AIK G A RI+E L R+ G DL +L+++ + L
Sbjct: 61 YESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVREL 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L +G+G K+ V SL FPVD ++ RI RLG V + P D+ L V
Sbjct: 121 LKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDPHDVMNAL-----VP 175
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D+++ Y+LH +I G+ CK R P C C + C
Sbjct: 176 DRLK---------------YQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|356513571|ref|XP_003525486.1| PREDICTED: endonuclease III-like [Glycine max]
Length = 284
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V A+ ++ +AI+ G A IK L L E G + LE+LR++ D+VK L
Sbjct: 117 WEQVLWAESKDVENAIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAEL 176
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+G+G K+V CV + +LQ FPVD ++ IA +GWVP ++HL + P
Sbjct: 177 SLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTMGWVPAVANRNKSYLHLNQRVPNE 236
Query: 1121 DKIQ----MYLWPRLCY 1133
K +Y +LC+
Sbjct: 237 LKFDLNCLLYTHGKLCH 253
>gi|323507809|emb|CBQ67680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 638
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+W A+ A ESE+ DAI+ G N A IK L + +E HG + L+ L + D + +
Sbjct: 199 ANWAAIHAAPESELVDAIRCGGLANNKARTIKGILAQTLEKHGKLSLDHLHDASDDDIMQ 258
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L+ G+G K CV + + VD +V R+ LGWVP + + HL + P
Sbjct: 259 QLVAFNGVGPKVASCVLAFCIGRDSMAVDTHVFRLCKALGWVPDKANRDQTYYHLHERVP 318
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA 1163
K Y LH +I G KR NC A
Sbjct: 319 GHLK-----------------YALHVLLIAHG-----KRCANCSA 341
>gi|298252264|ref|ZP_06976067.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297546856|gb|EFH80724.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 242
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH---------GSIDLEWLRNV 1051
WE VR A E+A+AIK G N+ A RI+ L+ L E + + L+
Sbjct: 65 WEEVRDAPTHEVAEAIKSGGLANVKAPRIQSALHTLSEWQRAKGDTRSLSAFLQDELKGQ 124
Query: 1052 PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
P ++ YL + G+G K+ CV L ++ P+D ++ R+ RLG + + H
Sbjct: 125 PLEEAWRYLQQMPGVGPKTAACVLLFNMGRPLMPIDTHLHRLTHRLGLIGPKVSADQAHT 184
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
LK P + Y LH +I G+ C + P C CPL EC
Sbjct: 185 IFLKALP-----------------PEWAYTLHVNLIRHGRTICHAQRPKCPQCPLLSECA 227
Query: 1172 HFASAVASARFALP 1185
+A +V LP
Sbjct: 228 -YAGSVNPQETMLP 240
>gi|125596638|gb|EAZ36418.1| hypothetical protein OsJ_20749 [Oryza sativa Japonica Group]
Length = 277
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 32/182 (17%)
Query: 1001 WEAVRCADESE---IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
W+ V DE E + DAI+ G A RI+ L + E G I LE+LR++ D+VK
Sbjct: 108 WDQV--VDEEEGKRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVK 165
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
L +G+G K+V CV + LQ FPVD +V RI +GWVP ++HL +
Sbjct: 166 TELSRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHLNSKI 225
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA---------CPLRG 1168
P D ++ ++L+ +T GK+ C+ S G CPL
Sbjct: 226 P--DDLK---------------FDLNCLFVTHGKL-CQSCSKKLGGQKTTGSNSMCPLAS 267
Query: 1169 EC 1170
C
Sbjct: 268 YC 269
>gi|51535148|dbj|BAD37860.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|51535812|dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|218197872|gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Group]
Length = 277
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 32/182 (17%)
Query: 1001 WEAVRCADESE---IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
W+ V DE E + DAI+ G A RI+ L + E G I LE+LR++ D+VK
Sbjct: 108 WDQV--VDEEEGKRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVK 165
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
L +G+G K+V CV + LQ FPVD +V RI +GWVP ++HL +
Sbjct: 166 TELSRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHLNSKI 225
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA---------CPLRG 1168
P D ++ ++L+ +T GK+ C+ S G CPL
Sbjct: 226 P--DDLK---------------FDLNCLFVTHGKL-CQSCSKKLGGQKTTGSNSMCPLAS 267
Query: 1169 EC 1170
C
Sbjct: 268 YC 269
>gi|358381882|gb|EHK19556.1| hypothetical protein TRIVIDRAFT_24735, partial [Trichoderma virens
Gv29-8]
Length = 274
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 71/170 (41%), Gaps = 19/170 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+WEA+ ++ I+ G + + I L + +GS L+ L + D
Sbjct: 108 NWEAIVDGGTEKLQRTIRSGGLSVVKSKVIINILRQTKAKYGSYSLDHLLHASNDSAMRE 167
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL +G+G K+ CV L LQ +FPVD +V RI LGW P + HL P
Sbjct: 168 LLSFQGVGPKTASCVLLFCLQRDSFPVDTHVYRITGLLGWRPETASREEAQAHLEARVPD 227
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGACPLR 1167
DK Y LH ++T GK C+ S G CPLR
Sbjct: 228 EDK-----------------YGLHILLVTHGKTCNECRAGSTKSGKCPLR 260
>gi|436837874|ref|YP_007323090.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
gi|384069287|emb|CCH02497.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
Length = 236
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAVR A ++ DAI+ I A I+ L L+ G+ ++++LR + ++ ++L
Sbjct: 61 WEAVRDAPLPDLIDAIQTANYPEIKAPYIQNVLRVLIAERGTANIDFLRELSTEEAMQWL 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
++ G+G K+ + L + Q PVD +V R+ R+G + + H LL P
Sbjct: 121 TNLPGIGPKTATLLLLFAFQKPVLPVDTHVHRVTQRIGAIGPKVSAAKAHDLLLSYLPA- 179
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
D L+ H G+ C +P C AC L +C + S
Sbjct: 180 --------------DAPVLFNFHKHFYWHGQRVCTWYNPRCEACVLAPDCDYLQSGKTML 225
Query: 1181 RFALPGPSEKG 1191
+ P KG
Sbjct: 226 LTSTPSKKPKG 236
>gi|345560267|gb|EGX43392.1| hypothetical protein AOL_s00215g128 [Arthrobotrys oligospora ATCC
24927]
Length = 531
Score = 74.7 bits (182), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 989 EERSHDKM-DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-------LH 1040
+E HD + V+W V D E+ AI++ G NI + IK L + E
Sbjct: 162 KEYGHDPVHGGVNWSLVHRRDVKELYKAIEKGGLANIKSKAIKGILEEVCEGTKKRGGKD 221
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
G I L++L D+V E L+ +G+G+K+ CV + L+ AFPVD +V RI+ LGWV
Sbjct: 222 GEISLDYLHEKGDDEVMETLMGFKGVGVKTATCVLMFCLRRSAFPVDTHVFRISKLLGWV 281
Query: 1101 P 1101
P
Sbjct: 282 P 282
>gi|159042442|ref|YP_001541694.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga maquilingensis
IC-167]
gi|157921277|gb|ABW02704.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga maquilingensis
IC-167]
Length = 230
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 983 RIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042
R+Y ER +++ S+ + +SE+ + ++ G A R+ E N + E +
Sbjct: 55 RVY----ERLKERLGSITPNTILSLSKSELENILRPIGSFRQRARRLIELANTVNEKYNG 110
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
LE++R + D+ + L+++ G+G K+ + V LL+L FPVD ++ RI+ RLG
Sbjct: 111 -SLEFIRGMGTDEARRTLMNLPGVGPKTADVV-LLNLGKPVFPVDTHIMRISHRLG---- 164
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
++ Y +K+ + W +L L +H +I FG+ C+ R P C
Sbjct: 165 ----------VMGGY---EKVSAF-WIKL--LKPNEYLMVHLGLIAFGRAICRSRRPLCE 208
Query: 1163 ACPLRGECKHFAS 1175
CPLR +CK++ S
Sbjct: 209 HCPLRVKCKYYLS 221
>gi|71003520|ref|XP_756426.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
gi|46096031|gb|EAK81264.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
Length = 1875
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+W A+ A ESE+ +AI+ G N A IK LN+ ++ HG + L+ L + D++ +
Sbjct: 1435 NWHAIHAAPESELVEAIRCGGLANNKARTIKGILNQTLQRHGKLSLDHLHDATDDEIMQE 1494
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ G+G K CV + + VD +V R+ L WVP + + HL + P
Sbjct: 1495 LVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALAWVPEKANRDQTYYHLHERVPG 1554
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
K Y LH +I GK+ C C +G
Sbjct: 1555 PLK-----------------YALHVLLIKHGKM--------CANCSAKG 1578
>gi|297625112|ref|YP_003706546.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
gi|297166292|gb|ADI16003.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
Length = 241
Score = 73.9 bits (180), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 980 LLRRIYSTGEERSHDKMDSV--DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 1037
L +R EER++ +M W VR A +E+A+AI + A I++ + R++
Sbjct: 55 LSQRTTWQNEERAYRRMWERFGSWVGVRDAPVAELAEAIAPSNYPEVKAPNIQKTVARVL 114
Query: 1038 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1097
E DL +LR++P D+ +L + G+GLK+ V L PVD +V R++ R+
Sbjct: 115 ERSPEADLSFLRDLPLDEALAWLTSLPGVGLKTASLVLLFCFARPVLPVDTHVYRVSQRV 174
Query: 1098 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKR 1157
G LL L + LY H ++ G+ C R
Sbjct: 175 G--------------LLSARVKTPTAAHAPLLALLPPEPAVLYNFHMALLVHGQRLCVWR 220
Query: 1158 SPNCGACPLRGECKHFASAVA 1178
+P C CPL C+ F + V
Sbjct: 221 APRCSRCPLTARCRWFRAQVG 241
>gi|297719745|ref|NP_001172234.1| Os01g0217900 [Oryza sativa Japonica Group]
gi|255673002|dbj|BAH90964.1| Os01g0217900, partial [Oryza sativa Japonica Group]
Length = 70
Score = 73.9 bits (180), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1451 VCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPS-----KKE 1505
V FG+S T+F L +IQ FWRGFVCVRGFDR R PRPL RLH S KK
Sbjct: 1 VYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNKKS 60
Query: 1506 AGSKRSRDE 1514
AGS RD+
Sbjct: 61 AGSAPGRDD 69
>gi|448626650|ref|ZP_21671429.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445760262|gb|EMA11526.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 277
Score = 73.6 bits (179), Expect = 9e-10, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 963 KTTPKKNSDNTVQQDW--DLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG 1020
+T +N+ + V Q +L+ R S G S D+ A+ AD+ E+A+ I G
Sbjct: 59 RTVLSQNTTDKVSQPAHDELMARYGSDGGPASGGDTDADLARALADADQPELAETISSAG 118
Query: 1021 QQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
N + RI R+ E +G D E++R PD+V+ LLD+ G+G K+ +CV L +
Sbjct: 119 LYNQKSKRIITLAQRICEEYGGEDGFDEFVREGDPDEVRSTLLDMNGVGPKTADCVLLFA 178
Query: 1079 -LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQK 1137
+ FPVD +V RI R+G P + + +L ++ P C
Sbjct: 179 GGRGGVFPVDTHVHRITRRMGLAPAEADHETVREYLERDVPAAK----------CGFG-- 226
Query: 1138 TLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALP 1185
H MI FG+ +C R P C ACPL G C AS P
Sbjct: 227 -----HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPASGDVVDP 273
>gi|448671097|ref|ZP_21687089.1| endonuclease III [Haloarcula amylolytica JCM 13557]
gi|445766179|gb|EMA17313.1| endonuclease III [Haloarcula amylolytica JCM 13557]
Length = 278
Score = 72.8 bits (177), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDI 1063
AD+ E+A+ I G N + RI R+ E +G D E++R+ P+ V+ LLD+
Sbjct: 106 ADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEAVRSTLLDM 164
Query: 1064 EGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
G+G K+ +CV L + + FPVD +V RIA R+G P + +L ++ P
Sbjct: 165 NGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVPAAK- 223
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVA 1178
C H MI FG+ +C R P C ACPL G C V
Sbjct: 224 ---------CGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQV--GVY 265
Query: 1179 SARFALPGPSE 1189
A + PSE
Sbjct: 266 PAADEITDPSE 276
>gi|340516169|gb|EGR46419.1| predicted protein [Trichoderma reesei QM6a]
Length = 274
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
S +W ++ ++ I G + + I + L++ +G L+ L + D+
Sbjct: 116 SDNWASIVEGGTEKLQRTIHSGGLSVVKSRVIMDILHQTKARYGKYSLDHLLDASDDEAM 175
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
LL +G+G K+ CV L L+ +F VD +V RI+ LGW+P HL
Sbjct: 176 RELLSFQGVGPKTASCVLLFCLRRDSFAVDTHVYRISSLLGWIPPSATREQAQAHLEARV 235
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGK--IFCKKRSPNCGACPLR 1167
P DK Y LH M+T GK CK R N G C LR
Sbjct: 236 PDEDK-----------------YGLHILMVTHGKRCAECKARGKNAGKCALR 270
>gi|170288346|ref|YP_001738584.1| HhH-GPD family protein [Thermotoga sp. RQ2]
gi|170175849|gb|ACB08901.1| HhH-GPD family protein [Thermotoga sp. RQ2]
Length = 220
Score = 72.8 bits (177), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++A+ IK G NI R+K L L E + +L LR++P ++E LL I+G+G
Sbjct: 68 EEKVAELIKPAGFFNIKTKRLKALLKFLKEY--NYNLSRLRDLPTHILRERLLKIKGIGK 125
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L +L+ F VD R+ R+ + L +Y + K+ M +
Sbjct: 126 ETADAILLYALEKPIFVVDSYTRRLLKRIFNIELN------------DYDEVQKLFMTHY 173
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
P D + E H ++ K FC K +P CG CPLR EC H +
Sbjct: 174 PE----DVRLYQEFHGLIVEHAKKFCNK-TPKCGVCPLRKECYHVS 214
>gi|15643148|ref|NP_228192.1| repair endonuclease [Thermotoga maritima MSB8]
gi|4980885|gb|AAD35467.1|AE001718_4 repair endonuclease, putative [Thermotoga maritima MSB8]
Length = 232
Score = 72.4 bits (176), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++A+ I+ G NI R+KE L L E + +L LR++P ++E LL I+G+G
Sbjct: 80 EEKVAELIRPAGFFNIKTKRLKELLKFLKEY--NYNLSRLRDLPTHILRERLLKIKGIGK 137
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L +L+ F VD R+ R+ + L +Y + K+ M +
Sbjct: 138 ETADAILLYALEKPVFVVDSYTRRLLKRIFNIELN------------DYDEVQKLFMTHY 185
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
P D + E H ++ K FC K +P CG CPL+ EC H +
Sbjct: 186 PE----DVRLYQEFHGLIVEHAKKFCSK-TPKCGVCPLKKECCHVS 226
>gi|448419884|ref|ZP_21580728.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
gi|445674798|gb|ELZ27335.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
Length = 283
Score = 72.4 bits (176), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVD---------WEAVRCADESEIADAIK 1017
+ SD Q D L YS+GE RS + + E++ A++SE+A+ I
Sbjct: 60 QNTSDVASQPAHDSLMERYSSGEARSASETRAGSEATRERSDLAESLAAAEQSELAETIS 119
Query: 1018 ERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
G N + I R+ E G D ++ P +V+E LLDI G+G K+ +CV
Sbjct: 120 SAGLYNQKSEMIIGAAERICEEFGGADGFDAFVTGGDPGEVRERLLDIHGVGPKTADCVL 179
Query: 1076 LLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYL 1134
L S + FPVD +V RIA R+G P + HL ++ P
Sbjct: 180 LFSGGRGGVFPVDTHVHRIARRMGLAPADADHEAVREHLERDVPA--------------- 224
Query: 1135 DQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECK 1171
+K + H MI FG+ +C R P C ACPL C+
Sbjct: 225 -EKCGFG-HTAMIQFGREYCTARKPACLDGPEACPLYDLCE 263
>gi|402075883|gb|EJT71306.1| hypothetical protein GGTG_10565 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 393
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 81/226 (35%), Gaps = 50/226 (22%)
Query: 970 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 1029
S NT + +R HD +W AV + + DAI+ G + I
Sbjct: 182 SQNTTDANSARAKRAMDAAYGGRHD-----NWAAVAAGGTARLEDAIRCGGLAAAKSRVI 236
Query: 1030 KEFLNRLVELHGS--------------------------IDLEWLRNVPPDKVKEYLLDI 1063
L RL E H S LE +R++P LL
Sbjct: 237 ISILERLRERHASSSSLSSLSSSPAVAKDDDEKNQNDSIYSLEHIRDLPTADAMRELLSF 296
Query: 1064 EGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ CV L L +F VD +V RIA LGW P + + H+HL P DK
Sbjct: 297 RGVGPKTASCVLLFCLGRDSFAVDTHVHRIAGLLGWRPPRATRDETHLHLDARVPDTDK- 355
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGK--IFCKKRSPNCGACPLR 1167
Y LH M+T GK CK G C LR
Sbjct: 356 ----------------YGLHVLMVTHGKRCAECKAGGRAAGRCELR 385
>gi|448411957|ref|ZP_21576313.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
gi|445669891|gb|ELZ22499.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
Length = 279
Score = 72.4 bits (176), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEY 1059
E++ AD+ E+A+ I G N + RI R+ E +G D E+++ P+ V+E
Sbjct: 100 ESLAAADQQELAETISSAGLYNQKSERIVALAERICEEYGGADGFDEFVKTGEPNVVRET 159
Query: 1060 LLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LLD+ G+G K+ +CV L S + FPVD +V RIA R+G L P D
Sbjct: 160 LLDMNGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMG---LAPADAD-------HEG 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
V + ++ + C H MI FG+ +C R P C ACPL C
Sbjct: 210 VREALEAAVPEEKCGFG-------HTAMIQFGREYCSARKPACLDDPEACPLADLCDQVG 262
Query: 1175 SAVASARFALPG 1186
+ + P
Sbjct: 263 VSPGTGEVVDPA 274
>gi|395217179|ref|ZP_10401538.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
gi|394455098|gb|EJF09644.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
Length = 235
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DWE V A E E+ADA+ A +I++ L + E G I++++L ++P D+ +
Sbjct: 65 DWEGVLNAPEDELADAVSTTRYPLQKAPQIQQTLRMIKEDRGEINIDFLADLPIDEAMAW 124
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ + L + + PVD +V R++ R+G + + H LL+ P
Sbjct: 125 LTRLPGVGPKTATLLLLFNFKKPVLPVDTHVFRVSQRVGLIGAKITANKAHDVLLEMLPK 184
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
D L+ H + G+ C P C C L G C +++ A
Sbjct: 185 ---------------DATELFNFHKHLFWHGQKVCTWSYPKCEKCVLNGICNYYSQVRAK 229
Query: 1180 A 1180
Sbjct: 230 G 230
>gi|418046315|ref|ZP_12684409.1| HhH-GPD family protein [Thermotoga maritima MSB8]
gi|351675868|gb|EHA59028.1| HhH-GPD family protein [Thermotoga maritima MSB8]
Length = 220
Score = 72.0 bits (175), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++A+ I+ G NI R+KE L L E + +L LR++P ++E LL I+G+G
Sbjct: 68 EEKVAELIRPAGFFNIKTKRLKELLKFLKEYN--YNLSRLRDLPTHILRERLLKIKGIGK 125
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L +L+ F VD R+ R+ + L +Y + K+ M +
Sbjct: 126 ETADAILLYALEKPVFVVDSYTRRLLKRIFNIELN------------DYDEVQKLFMTHY 173
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
P D + E H ++ K FC K +P CG CPL+ EC H +
Sbjct: 174 PE----DVRLYQEFHGLIVEHAKKFCSK-TPKCGVCPLKKECCHVS 214
>gi|358400221|gb|EHK49552.1| hypothetical protein TRIATDRAFT_26345, partial [Trichoderma
atroviride IMI 206040]
Length = 268
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
S +W+A+ ++ IK G + + I L + + +G+ L L N D+
Sbjct: 100 SDNWDAIVQGGTDKLQQTIKSGGLSVVKSKVIMNILRQTKDQYGTYSLNHLLNASNDEAM 159
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
LL +G+G K+ CV L LQ +F VD +V RI+ LGW P + + HL
Sbjct: 160 RELLSFQGVGPKTASCVLLFCLQRDSFAVDTHVYRISGLLGWRPGEANREEAQAHLEATV 219
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGACPLR 1167
P DK Y LH M+T G+ CK G C LR
Sbjct: 220 PDEDK-----------------YGLHVLMVTHGRTCDECKAGGKIAGKCALR 254
>gi|159898923|ref|YP_001545170.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon aurantiacus
DSM 785]
gi|159891962|gb|ABX05042.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon aurantiacus
DSM 785]
Length = 222
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W AV A+ SE+ + I+ G I A RI+ L ++E G L++LR + + + +L
Sbjct: 61 WAAVLNAESSELEETIRVGGLAKIKAARIQNTLAVILEQRGEFSLDFLRELGLHEARAWL 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+ CV + A VD ++ R+A R+G + + H L PV
Sbjct: 121 TALPGIGPKTAGCVLCFACNQPAMIVDTHIHRVAKRVGMIGPKVSADAAHDLLESAVPV- 179
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
DQ +Y+ H ++ G+ C + P C CPL C +
Sbjct: 180 --------------DQ--MYQFHVSVLLHGRQICHAQRPACERCPLTEICDFY 216
>gi|449541266|gb|EMD32251.1| hypothetical protein CERSUDRAFT_22472, partial [Ceriporiopsis
subvermispora B]
Length = 275
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK-- 1057
D+ A+ A +SE+ +AI+ G N AG I++ L + E HGS L+ L V + K
Sbjct: 83 DFAAIAEAPKSEVVEAIRMGGLANKKAGVIQQVLKEVRERHGSYSLQHLAGVVEKEAKGK 142
Query: 1058 --------------EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
+ L+ +G+G K+ CV L L +FPVD +V R++ LGWVP +
Sbjct: 143 AKSSGTPVSDEEAMQELVSYDGVGPKTASCVLLFCLGRASFPVDTHVFRLSKLLGWVPAK 202
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK--KRSPNC 1161
HL + P Q Y LH MI G+ CK K S +
Sbjct: 203 ADRVTAQAHLDLKIP-----------------QDLKYGLHVLMIAHGR-RCKGCKTSGSR 244
Query: 1162 GACPLR 1167
+CPL+
Sbjct: 245 TSCPLK 250
>gi|388852390|emb|CCF54005.1| uncharacterized protein [Ustilago hordei]
Length = 635
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+WEA+ A ESE+ +AI+ G N A IK L + +E HG + L+ L N D++ +
Sbjct: 193 NWEAIHSAPESELVEAIRCGGLANNKARTIKGILAQTMERHGKLSLDHLHNATDDEIMQE 252
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ G+G K CV + + VD +V R+ L WVP + + HL + P
Sbjct: 253 LVRFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALRWVPEKANRDQTYYHLHERVPG 312
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
K Y LH +I GK+
Sbjct: 313 DLK-----------------YALHVLLIKHGKM 328
>gi|448605866|ref|ZP_21658459.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
gi|445741189|gb|ELZ92693.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
Length = 268
Score = 71.2 bits (173), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 1002 EAVRCADESEIADAIKERG----QQNIIAGRIKEFLNRLVELHGSIDLE-WLRNVPPDKV 1056
E++ AD I DAI+ G + N+I G +E L + D + ++R P V
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSNLIQGVAEEVL---ADFGSEADFDRYVREEDPATV 146
Query: 1057 KEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L +
Sbjct: 147 RDRLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALER 206
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECK 1171
+ P D+K + H MI FG+ FCK R+P C GACP+ C+
Sbjct: 207 DIP----------------DEKCGFG-HTAMIQFGREFCKARTPACLDGPGACPMADVCE 249
Query: 1172 HFASAVASARFALPGPSE 1189
A+ P ++
Sbjct: 250 MVGVDPAAQSVTDPAAAD 267
>gi|171184578|ref|YP_001793497.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
gi|170933790|gb|ACB39051.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
Length = 222
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 23/181 (12%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
+ S+ EAV E E+A IK G I A +K ++ HG I + L + ++
Sbjct: 59 LGSITPEAVAKLAEEELAALIKPAGMYRIRARALKALAEAFLK-HG-ITPQRLLEMGAER 116
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
+ +L+ + G+G K+ + V L+++ AFPVD ++ RIA R G + +
Sbjct: 117 ARAFLMSLPGVGKKTADVV-LVNIGLPAFPVDTHITRIARRWG--------------IGR 161
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
Y D+I + RL E H ++I FG+ C+ RSP CG CP+ C F S
Sbjct: 162 SY---DEISRWFMDRL---PPARYLEFHLKLIQFGRDVCRARSPRCGVCPIGERCPSFKS 215
Query: 1176 A 1176
A
Sbjct: 216 A 216
>gi|429220080|ref|YP_007181724.1| endoIII-related endonuclease [Deinococcus peraridilitoris DSM 19664]
gi|429130943|gb|AFZ67958.1| putative endoIII-related endonuclease [Deinococcus peraridilitoris
DSM 19664]
Length = 263
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 15/175 (8%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
V WE V AD + +A+AI + A I+ L + E G ++++L ++P ++
Sbjct: 96 VSWEGVEQADVTALAEAISPSNFAEVKAPNIQRTLRAIREARGEYNIDFLADLPVEEGLR 155
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+LL + G+GLK+ V L + PVD +V R++ R+G + +
Sbjct: 156 WLLALPGVGLKTATLVLLFCFRKSVLPVDTHVHRVSQRVGLIGPK--------------- 200
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
VM + L L + LY H ++T G+ C P C C LR C ++
Sbjct: 201 VMHEAAHRLLLALLPPEPALLYNFHLNLLTHGQKICTFSRPRCSKCVLREVCDYY 255
>gi|397691245|ref|YP_006528499.1| HhH-GPD family protein [Melioribacter roseus P3M]
gi|395812737|gb|AFN75486.1| HhH-GPD family protein [Melioribacter roseus P3M]
Length = 221
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 970 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 1029
+DN + + L+R YS DW + A EI IK+ G N AG I
Sbjct: 31 NDNNSYEAYQNLKRKYS-------------DWNQLVKAPLKEIEKTIKKAGLTNQKAGAI 77
Query: 1030 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
K + L +D+++++ + + EYL +G+G+K+ CV L SL PVD +
Sbjct: 78 KNLVVNLSR-DNRLDMKFIKKMDNKEALEYLTSFKGIGIKTASCVLLFSLYRNVCPVDTH 136
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
V R R+G V + P + + + P + + LH +I
Sbjct: 137 VHRTLNRIGIVN-EKSPEKTFLRINENLP-----------------EGIAHSLHTNLIKL 178
Query: 1150 GKIFCKKRSPNCGACPLRGECKH 1172
G+ C+ +P+C CP+ C +
Sbjct: 179 GRGICRPTNPDCTVCPISDLCAY 201
>gi|282164121|ref|YP_003356506.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282156435|dbj|BAI61523.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 225
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E +IA+ IK G I A RIKE +++ +G D++++ P+ ++ LL IEG+
Sbjct: 66 APEDKIAELIKIGGLYTIKARRIKEISRLILDDYGG-DIDFVCTANPEAARKELLSIEGV 124
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ +CV L + PVD +V R+ RLG VP + + H L++ P +
Sbjct: 125 GPKTADCVLLFACGDDVIPVDTHVFRVTKRLGIVPEKADHEETHRILMENVPAGKR---- 180
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+H +I FG+ C+ +SP C L C +
Sbjct: 181 -------------GSVHVDLIRFGREICRAQSPKHDECFLIDVCDY 213
>gi|397619559|gb|EJK65312.1| hypothetical protein THAOC_13838, partial [Thalassiosira oceanica]
Length = 527
Score = 70.5 bits (171), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 1000 DWEAV-RCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
DWE V ++ S +A AI+ G R++ L ++ E G + E+LR+ D++K+
Sbjct: 334 DWEQVAESSNASRVAAAIRCAGLSKTRTERMQLMLQKVKEERGKANFEFLRDCSSDEIKK 393
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
LL +G+G K+V CV L +L FPVD +V RI+ + WVP
Sbjct: 394 QLLQHKGMGPKTVSCVLLFALLKPEFPVDTHVLRISKQNRWVP 436
>gi|322371204|ref|ZP_08045756.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
gi|320549194|gb|EFW90856.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
Length = 268
Score = 70.5 bits (171), Expect = 8e-09, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E + AD E+AD I+ G N A I E R++ GS E++R P++V+
Sbjct: 90 ETLAKADHGELADTIRSAGLYNQKADVIIESAERVLADFGSAAAFDEFVREEEPNEVRSE 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LLD+ G+G K+ +CV L S Q FPVD +V RI R+G P D+ L +E P
Sbjct: 150 LLDMNGVGPKTADCVLLFSGGQSGVFPVDTHVHRIYRRMGIAPADADHEDVREVLEREVP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
+K + H I FG+ +C R P C ACP+ C+
Sbjct: 210 A----------------EKCGFG-HTASIQFGREYCSARKPACLDGPEACPMFDLCEQV- 251
Query: 1175 SAVASARFALPGPSEKGI 1192
V R + P+E G+
Sbjct: 252 -GVDVERGEVVDPAESGL 268
>gi|336375725|gb|EGO04061.1| hypothetical protein SERLA73DRAFT_175790 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388834|gb|EGO29978.1| hypothetical protein SERLADRAFT_458392 [Serpula lacrymans var.
lacrymans S7.9]
Length = 366
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 986 STGEERSHDKMDSV----DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1041
S R+ +D+ D+ A+ A ++ AI G N A I++ L + + HG
Sbjct: 152 SANSTRAKHSLDTAFGRNDFAAIAKAARPDVVAAIASGGLANKKAKTIQDILESVKQRHG 211
Query: 1042 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+ +L+ L +VP ++ L+ G+G K+ CV L +F VD +V R++ LGWVP
Sbjct: 212 AYNLQHLADVPDEEAMRELVSYNGVGPKTAACVLSFCLGRESFAVDTHVYRLSRLLGWVP 271
Query: 1102 LQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
HL P K Y LH M+ G+I +
Sbjct: 272 QSADRVLAQAHLDVTLPGELK-----------------YALHVMMVKHGRICSGCKKDGK 314
Query: 1162 GACPLR 1167
G+CPL+
Sbjct: 315 GSCPLK 320
>gi|344212676|ref|YP_004796996.1| endonuclease III [Haloarcula hispanica ATCC 33960]
gi|343784031|gb|AEM58008.1| endonuclease III [Haloarcula hispanica ATCC 33960]
Length = 277
Score = 69.3 bits (168), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 28/189 (14%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDIEG 1065
+ E+A+ I G N + RI R+ E +G D E++R+ P+KV+ LLD+ G
Sbjct: 107 QPELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEKVRSTLLDMNG 165
Query: 1066 LGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L + + FPVD +V RIA R+G P + +L ++ P
Sbjct: 166 VGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVP------ 219
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASA 1180
+K + H MI FG+ +C R P C ACPL G C V A
Sbjct: 220 ----------GEKCGFG-HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQV--GVYPA 266
Query: 1181 RFALPGPSE 1189
+ PSE
Sbjct: 267 ADEVTDPSE 275
>gi|284036648|ref|YP_003386578.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
gi|283815941|gb|ADB37779.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
Length = 241
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 15/176 (8%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE VR A ++ DAI+ I A I+ L L G ++++L + + +L
Sbjct: 65 WEQVRDAPLPDLIDAIRSANYPEIKAPYIQNLLTHLFRETGQANVDFLGQLSTEDAMAWL 124
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G+K+ + L Q PVD +V R+ RLG + + H LL P
Sbjct: 125 TKLPGIGMKTATILLLFKFQKPVLPVDTHVHRVTQRLGLIGPKVSAEKAHTILLSYLP-- 182
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
LD L+ H G+ C P C C L+ C ++ S
Sbjct: 183 -------------LDALVLFNFHKHFYWHGQRVCTWYFPKCSECVLQTMCDYYQSG 225
>gi|385802541|ref|YP_005838941.1| DNA-(apurinic or apyrimidinic site) lyase [Haloquadratum walsbyi C23]
gi|339728033|emb|CCC39154.1| endonuclease III [Haloquadratum walsbyi C23]
Length = 223
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ A E+AD I+ G +N A RI+ L + E G L +L N + +
Sbjct: 58 DYRAMETAPHEELADVIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V + F VD +V R+A R G + H L + P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D ++ Y LH MIT G+ +C +SPNC + C
Sbjct: 178 --DDLK---------------YSLHVLMITHGREYCTAQSPNCANSVCQTYC 212
>gi|18312246|ref|NP_558913.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
gi|7141250|gb|AAF37269.1|AF222334_1 putative DNA glycosylase [Pyrobaculum aerophilum]
gi|18159688|gb|AAL63095.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
Length = 223
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
E L + P++ +E LL + G+G K+ + V L++L AFPVD ++ RIA R G
Sbjct: 108 ERLVEMGPERARELLLSLPGVGKKTADVV-LVNLGLPAFPVDTHITRIAKRWG------- 159
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACP 1165
+ ++Y + + M PR YLD H ++I FG+ C+ R+P CG CP
Sbjct: 160 -------IGEKYDEISRWFMERLPRDKYLD------FHLKLIQFGRDVCRARNPKCGQCP 206
Query: 1166 LRGECKHFASA 1176
+ +C F SA
Sbjct: 207 IGAKCPSFKSA 217
>gi|409048228|gb|EKM57706.1| hypothetical protein PHACADRAFT_251498 [Phanerochaete carnosa
HHB-10118-sp]
Length = 323
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 39/198 (19%)
Query: 987 TGEERSHD-KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL 1045
T +R+ D K ++EA+ A +SE+ DA++ G N A I+ L+ + E HGS L
Sbjct: 110 TAAKRNLDVKFGRNNFEAIVNAPKSELVDALRTGGLANKKAEVIQRILHEVKERHGSYSL 169
Query: 1046 EWLRNV-----PPDKVKEY--------LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
+ L V P ++ K + L+ G+G K+ CV L L +F VD +V R
Sbjct: 170 QHLAGVVESQEPGEEAKVFSDEDAMKELVSYNGVGPKTASCVLLFCLGRASFAVDTHVFR 229
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
++ LGWVP + HL P Y LH M+ G+
Sbjct: 230 LSRLLGWVPARANRVTAQAHLDLRVP-----------------NDLKYGLHVLMVGHGR- 271
Query: 1153 FCKKRSPNCGACPLRGEC 1170
C C RGEC
Sbjct: 272 -------QCNGCRGRGEC 282
>gi|374327779|ref|YP_005085979.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
gi|356643048|gb|AET33727.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
Length = 224
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
++ V EA+ E+ + I+ G A +K + ++L I + L + P
Sbjct: 60 RLGGVTPEALLALSTEELEELIRPAGMHRQRARNLKALADAFIKL--GITPQRLVEMGPG 117
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ + LL + G+G K+ + V L++L AFPVD ++ RIA R G GD + +
Sbjct: 118 EARRLLLSLPGVGEKTADVV-LVNLGLPAFPVDTHITRIAKRWG-------VGDRYGQIS 169
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ + M + YL E+H ++I FG+ CK R P CG CP+ C +
Sbjct: 170 RWFMEMVPPERYL-------------EIHLKLIQFGRYVCKARDPRCGVCPIGERCPSYR 216
Query: 1175 SA 1176
SA
Sbjct: 217 SA 218
>gi|296420260|ref|XP_002839693.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635887|emb|CAZ83884.1| unnamed protein product [Tuber melanosporum]
Length = 441
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN--RLVELH--------GSIDLEW 1047
+VDW+AVR AD ++ ++I++ G RIK L+ R L G + L++
Sbjct: 194 TVDWDAVRRADLDDVVNSIRKGGMAPTKGRRIKNLLDAKRKEPLSNPDKDDEDGDLSLDY 253
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPG 1107
+ + D+ ++ L +G+G K+ CV L L+ +F VD +V R++ L WVP +
Sbjct: 254 IHKLSDDEARQKLTSFDGVGPKTASCVMLFCLRRDSFAVDTHVFRLSKFLKWVPAKATRE 313
Query: 1108 DLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
+ HL P K Y LH +I G+ CK+ C A P
Sbjct: 314 TTYAHLDVRVPAEHK-----------------YALHNLLIRHGRT-CKE----CKAGPKH 351
Query: 1168 GECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSE 1224
K +S + PGP + + G G ++V +P I E + SE
Sbjct: 352 KGKKRVSSETSLDLSPEPGPRMRKVWI-----GTGMMKEILVE-VPDIGQEGEAESE 402
>gi|110667125|ref|YP_656936.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Haloquadratum walsbyi DSM 16790]
gi|109624872|emb|CAJ51281.1| endonuclease III [Haloquadratum walsbyi DSM 16790]
Length = 223
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ A E+AD I+ G +N A RI+ L + E G L +L N + +
Sbjct: 58 DYRAMETAPHEELADIIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V + F VD +V R+A R G + H L + P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D ++ Y LH MIT G+ +C +SPNC + C
Sbjct: 178 --DDLK---------------YSLHVLMITHGREYCTAQSPNCANSVCQTYC 212
>gi|365174645|ref|ZP_09362085.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
gi|363614442|gb|EHL65936.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
Length = 231
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 17/180 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V AD E+ + ++ G + RI++ L + E G L+ LR +V+EYL
Sbjct: 65 WEEVAHADLEELKEVLRIAGMSSTKPPRIQQILAAVKEKFGGYTLKELRGWKQPEVREYL 124
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+ V L FPVD ++ R++ R GW + P
Sbjct: 125 TSLPGVGPKTSAIVECFDLGMPGFPVDTHITRLSKRFGWADEKSPP-------------- 170
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
DKIQ L L + H + G+ C R P+C C L C + A A
Sbjct: 171 DKIQARL---EAALPPERFRGGHLNFLDHGRSICSARKPDCARCALAKWCGYGKRAAEEA 227
>gi|229918737|ref|YP_002887383.1| endonuclease III [Exiguobacterium sp. AT1b]
gi|229470166|gb|ACQ71938.1| endonuclease III [Exiguobacterium sp. AT1b]
Length = 219
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ AD SEI IK G A +K ++V HG I VP D+ L
Sbjct: 63 EAMAAADVSEIEALIKRIGLYRNKAKNVKALSEKIVNEHGGI-------VPSDRAS--LE 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V ++ AF VD +V R++ RLG + + L+K++P
Sbjct: 114 ALPGVGRKTANVVLSVAFHEPAFAVDTHVERVSKRLGICRWKDNVRQVEDTLMKKFP--- 170
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ +LH+Q I FG+ CK + P C ACPL C+
Sbjct: 171 --------------REEWSQLHHQFIFFGRYHCKAQRPGCEACPLLHMCR 206
>gi|354611948|ref|ZP_09029900.1| HhH-GPD family protein [Halobacterium sp. DL1]
gi|353191526|gb|EHB57032.1| HhH-GPD family protein [Halobacterium sp. DL1]
Length = 269
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ SD Q D L Y+ GEE + A+ A + E+A+ I G N +
Sbjct: 63 QNTSDVASQPAHDALLERYAPGEETDLAR-------ALADAHQDELAETISSAGLYNQKS 115
Query: 1027 GRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
+ ++ E +G D E++R PD V++ LLD++G+G K+ +CV L S
Sbjct: 116 ETLIRLAGQICEEYGGEAGFD-EFVRTEDPDAVRDALLDMKGVGPKTADCVLLFSGGRAG 174
Query: 1084 -FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
FPVD +V RIA R+G P P H V + ++ + C
Sbjct: 175 VFPVDTHVHRIARRMGLAP----PDADH------EGVREALEAAVPAEACGFG------- 217
Query: 1143 HYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
H MI FG+ +C R P C ACPL C
Sbjct: 218 HTAMIQFGREYCTARKPACLDGPEACPLYDYC 249
>gi|358060340|dbj|GAA93745.1| hypothetical protein E5Q_00391 [Mixia osmundae IAM 14324]
Length = 1544
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D+ A++ A ++ ++I G N+ A IK+ L+++ E G +DL +L ++ V
Sbjct: 643 DYAAIQAASVEDVTESIATGGLANVKAKVIKKVLDQVQEKRGKLDLTYLHDMEDIDVMRE 702
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ +G+G K+ CV L L +F VD +V R+ L WVP + HL + P
Sbjct: 703 LISFDGVGFKTASCVLLFCLGRESFAVDTHVFRLTKALNWVPAKADRETTFQHLDVKIPG 762
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN--------CGACPLR 1167
K Y LH +I G+ CK S N +CPLR
Sbjct: 763 PLK-----------------YPLHSLLIHHGR-SCKNCSANGVLTEEPVVESCPLR 800
>gi|284042265|ref|YP_003392605.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
gi|283946486|gb|ADB49230.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
Length = 241
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL--HGSIDLEWLRNVPPDKVK 1057
DW AV A +E+ +AI+ G + + RI++ L + + +DL +LR+ +
Sbjct: 79 DWRAVLEAPNAEVEEAIRPGGISKVKSKRIQQILRAIDDSPEGAGLDLSFLRDASVPDGQ 138
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV-PLQPLPGDLHIHLLKE 1116
YL + G+G K+ CV L + PVD +V R+ +RL + P P +LH +L
Sbjct: 139 RYLCSLPGVGRKTAACVLLFAYGLRDVPVDTHVSRVGMRLRLLRPGAPFE-ELHDEMLDL 197
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P ++ E H ++ G+ C R P+C AC LR C
Sbjct: 198 SPRGQEL-----------------EFHVNLLRHGRRTCHARRPDCPACVLRRVC 234
>gi|148269671|ref|YP_001244131.1| HhH-GPD family protein [Thermotoga petrophila RKU-1]
gi|281411619|ref|YP_003345698.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
gi|147735215|gb|ABQ46555.1| DNA-3-methyladenine glycosylase III [Thermotoga petrophila RKU-1]
gi|281372722|gb|ADA66284.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
Length = 220
Score = 68.6 bits (166), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++A+ I+ G NI R+K L L E + +L LR++P ++E LL I+G+G
Sbjct: 68 EEKVAELIRPAGFFNIKTKRLKALLKFLKEY--NYNLSRLRDLPTHILRERLLKIKGIGK 125
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L +L+ F VD R+ R+ + L +Y + ++ M +
Sbjct: 126 ETADAILLYALEKPIFVVDSYTRRLLKRIFNIELN------------DYDEVQRLFMTHY 173
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
P D + E H ++ K FC K +P CG CPL+ EC H +
Sbjct: 174 PE----DVRLYQEFHGLIVEHAKKFCSK-TPKCGVCPLKKECCHVS 214
>gi|313127078|ref|YP_004037348.1| endoiii-related endonuclease [Halogeometricum borinquense DSM 11551]
gi|448288454|ref|ZP_21479653.1| endoiii-related endonuclease [Halogeometricum borinquense DSM 11551]
gi|312293443|gb|ADQ67903.1| predicted endoIII-related endonuclease [Halogeometricum borinquense
DSM 11551]
gi|445569605|gb|ELY24177.1| endoiii-related endonuclease [Halogeometricum borinquense DSM 11551]
Length = 277
Score = 68.6 bits (166), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEG 1065
++SE+A+ I G N + I R+ E G D E++++ PD V++ LLDI G
Sbjct: 106 EQSELAETIASAGLYNQKSEMIIGAAERICESFGGADGFDEFVKDEDPDTVRKRLLDIHG 165
Query: 1066 LGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L S + FPVD +V RI R+G D+ HL + P
Sbjct: 166 VGPKTADCVLLFSGGRGGVFPVDTHVHRIGRRMGLASADADHEDVREHLEADVPA----- 220
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
+K + H MI FG+ +CK R P C ACPL C
Sbjct: 221 -----------EKCGFG-HTAMIQFGREYCKARKPACLDGPEACPLYDLC 258
>gi|403252796|ref|ZP_10919102.1| repair endonuclease [Thermotoga sp. EMP]
gi|402811884|gb|EJX26367.1| repair endonuclease [Thermotoga sp. EMP]
Length = 232
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++A+ I+ G NI R+KE L L E + DL LR++P ++E L I+G+G
Sbjct: 80 EEKMAELIRPAGFFNIKTKRLKELLKFLKEY--NYDLSRLRDLPTHILRERFLKIKGIGK 137
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L +L+ F VD R+ R+ + L +Y + ++ M +
Sbjct: 138 ETADAILLYALEKPIFVVDSYTRRLLKRIFNIELN------------DYDEVQRLFMTHY 185
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
P D + E H ++ K FC K +P C ACPLR EC H +
Sbjct: 186 PE----DVQLYQEFHGLIVEHAKKFCSK-TPKCDACPLRKECYHVS 226
>gi|126458694|ref|YP_001054972.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
gi|126248415|gb|ABO07506.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
Length = 219
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 34/207 (16%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ SD + +D L+R ++ + EAV E E+A+ IK G I A
Sbjct: 44 QNTSDRNAFKAYDQLKR-----------RLGEITPEAVLQLSEDELAELIKPAGMYRIRA 92
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
I+ + + + E LR + P + +++LL + G+G K+ + + L++L AFPV
Sbjct: 93 RNIRALADAFI--RHKVTPEKLREMGPVEARKFLLSLPGVGEKTADVI-LVNLGLPAFPV 149
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D ++ RIA R G V G++ ++ P + YL E+H ++
Sbjct: 150 DTHIRRIAKRWGIVGNH---GEISRRFMEAVPP----EKYL-------------EVHLKL 189
Query: 1147 ITFGKIFCKKRSPNCGACPLRGECKHF 1173
I FG+ C R+P C CP+ +C +
Sbjct: 190 IQFGRDICTARAPKCHICPIGSKCPSY 216
>gi|239906402|ref|YP_002953143.1| DNA glycosylase [Desulfovibrio magneticus RS-1]
gi|239796268|dbj|BAH75257.1| putative DNA glycosylase [Desulfovibrio magneticus RS-1]
Length = 216
Score = 68.2 bits (165), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D + A +A+ I+ G + AGR+K + +VE G DL L D+ ++
Sbjct: 60 LDPHVLHAASLEAVAERIRPAGHFRVKAGRLKNLMALIVEELGG-DLTALAGYDLDQARD 118
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL ++G+G ++ + + L L AF VD RI R G P + +L + P
Sbjct: 119 KLLSVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLAPEEAGYDELRELFMDALP 178
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
+ +++Y E H ++ G +C+ R+P C ACPL
Sbjct: 179 --EDVRLY-------------NEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|449067484|ref|YP_007434566.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449069758|ref|YP_007436839.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
gi|449035992|gb|AGE71418.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449038266|gb|AGE73691.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
Length = 225
Score = 68.2 bits (165), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+ ++ AD + I DAI+ G N A IK + +L +I+++ K++++L
Sbjct: 71 DRIKHADINTIIDAIRVAGLGNSKARYIKNVAEVINDLDLNIEIDC------QKLRDFLT 124
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
IEG+G K+ + V L + FP+D ++ R+ RLG+ L P
Sbjct: 125 AIEGIGDKTADVVLLTCFRCREFPIDTHIRRVISRLGF--------------LGSSPKYK 170
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I Y R D L LH+ +I G+ CK R P C C +R CK++
Sbjct: 171 DISEYFKTRFSSED---LLNLHHLLIAHGRKTCKSRKPICDKCVIRDYCKYY 219
>gi|70607241|ref|YP_256111.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
gi|68567889|gb|AAY80818.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
Length = 223
Score = 68.2 bits (165), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+ ++ AD + I DAI+ G N A IK + +L +I+++ K++++L
Sbjct: 69 DRIKHADINTIIDAIRVAGLGNSKARYIKNVAEVINDLDLNIEIDC------QKLRDFLT 122
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
IEG+G K+ + V L + FP+D ++ R+ RLG+ L P
Sbjct: 123 AIEGIGDKTADVVLLTCFRCREFPIDTHIRRVISRLGF--------------LGSSPKYK 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I Y R D L LH+ +I G+ CK R P C C +R CK++
Sbjct: 169 DISEYFKTRFSSED---LLNLHHLLIAHGRKTCKSRKPICDKCVIRDYCKYY 217
>gi|269837103|ref|YP_003319331.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter thermophilus
DSM 20745]
gi|269786366|gb|ACZ38509.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter thermophilus
DSM 20745]
Length = 247
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V A E+ADAI+ G A RI+ L + L L +P + K L
Sbjct: 77 WDEVVAAPVEEVADAIRSGGLARQKAPRIQAALAAALNSGEDPPLASLFTLPLPEAKRRL 136
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+ CV L + A PVD +V R++ R+G + + E
Sbjct: 137 TSLPGIGPKTAACVLLFACGRPALPVDTHVYRVSRRVGLID----------QGVSEAAAH 186
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
D+++ L P +Y H +I G+ CK P C C + C ++ + S+
Sbjct: 187 DRLEPLLKP-------DEVYPFHVGLIRHGRRVCKATRPRCDECCISDLCDYYQAGCQSS 239
Query: 1181 R 1181
R
Sbjct: 240 R 240
>gi|320354681|ref|YP_004196020.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
gi|320123183|gb|ADW18729.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
Length = 214
Score = 67.8 bits (164), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+A+ I+ G NI AGR+ L+ + + HG +L+ P +++E LL I+G+G ++
Sbjct: 73 LAEYIRPAGYYNIKAGRLHNLLSTINQQHGG-NLQAFLEQPLPQLREQLLAIKGIGRETA 131
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
+ + L + F VD RI VR H L+ E + IQ L
Sbjct: 132 DSILLYAAGLPIFVVDAYTHRILVR-------------H-QLIDEECGYEAIQELFMDNL 177
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
D + E H ++ G ++CKK+ P+C +CPL+G
Sbjct: 178 A-CDPRLYNEYHALLVRVGNVYCKKKHPDCASCPLQG 213
>gi|327310305|ref|YP_004337202.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
gi|326946784|gb|AEA11890.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
Length = 213
Score = 67.4 bits (163), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+A+ E +A+ I+ G + A ++ E L + +DL + ++ ++ + +L
Sbjct: 62 QALLSLGEERLAELIRPAGMHRVRARKLIELSRSLSD----VDLSRIADMDVEEARRFLT 117
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ + V L +L AFPVD ++ RIA R G + K Y +
Sbjct: 118 SLPGVGEKTADVV-LANLGKPAFPVDTHITRIARRWG--------------IGKRYGEIS 162
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ M P YL E+H ++I FG+ +C+ RSP CG CP+R C
Sbjct: 163 RWFMERLPPERYL------EVHLKLIQFGRDYCRARSPRCGECPVRDLC 205
>gi|229581431|ref|YP_002839830.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
gi|228012147|gb|ACP47908.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
Length = 233
Score = 67.4 bits (163), Expect = 6e-08, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + AD S+I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMN---------- 167
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+Y ++ L+ L +LH+ +I G+ CK R P C +C ++ C+++
Sbjct: 168 -AKYELISSTLKELF------SAYDLLQLHHLLIAHGRQICKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|390959927|ref|YP_006423684.1| putative endoIII-related endonuclease [Terriglobus roseus DSM 18391]
gi|390414845|gb|AFL90349.1| putative endoIII-related endonuclease [Terriglobus roseus DSM 18391]
Length = 258
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+ D V WE +R A EI D ++ + A ++K+ L R+ E G++ L +L
Sbjct: 86 NSWDEVRWERLRDASIPEIEDTLRLATFPDRKAVQLKQTLERITERAGTLSLAFLGKYRT 145
Query: 1054 DKVKEYLLDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
DKV+ ++ ++ G G+K S V SL+ A +D + RIA+RLG VP +
Sbjct: 146 DKVRAWIEELPGAGVKASAAVVNFSSLRRRAIAIDGHHQRIAIRLGVVPANATARQVEAA 205
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+ P D + T+ E H + G+ C R +C CPLR C
Sbjct: 206 LVPLAPA-DWTAV------------TMDEHHTLVKKLGQRVCTLREAHCNRCPLREVCVT 252
Query: 1173 FASA 1176
++A
Sbjct: 253 GSAA 256
>gi|226357357|ref|YP_002787097.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226319347|gb|ACO47343.1| putative DNA-(apurinic or apyrimidinic site) lyase (endonuclease III)
[Deinococcus deserti VCD115]
Length = 247
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW+A+ A +A AI+ A RI+ L + + G +L++LR +P ++
Sbjct: 72 DWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATLRAIRDAPGGYNLDFLRELPVKDALKW 131
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L D+ G+G+K+ V L + FPVD +V R+ R+G +P G+ H +
Sbjct: 132 LTDLPGVGIKTASLVLLFNYARPVFPVDTHVHRVNTRVGTIPRM---GEQAAHRALLGLL 188
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
LYELH ++ G+ C P C C LR C FA
Sbjct: 189 PPD-------------PPLLYELHINLLKHGQKVCTWSRPRCLQCVLRERCDAFA 230
>gi|257053763|ref|YP_003131596.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis DSM
12940]
gi|256692526|gb|ACV12863.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis DSM
12940]
Length = 274
Score = 67.4 bits (163), Expect = 7e-08, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 29/229 (12%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ SD Q D L Y + +E D +D A+ A+++E+A+ I G N +
Sbjct: 65 QNTSDVASQPAHDALMDRYGSEDEEEVDLVD-----ALADAEQAELAETISGAGLYNQKS 119
Query: 1027 GRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIA 1083
RI E R+ E +G D ++R P + V+E LL + G+G K+ +CV L + +
Sbjct: 120 ARIIEIAQRIREEYGGEDDFDAFVREEPAEAVRETLLAMNGVGPKTADCVLLFAGGRDGV 179
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
FPVD +V RI RLG P PG H V + ++ + C H
Sbjct: 180 FPVDTHVHRIYRRLGIAP----PGADH------EAVREVLEKKVPEGKCGFG-------H 222
Query: 1144 YQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALPGPS 1188
I FG+ +C R P C ACPL C AS P +
Sbjct: 223 TASIQFGREYCSAREPACLDGPEACPLYDLCDRVGIEPASGDVVDPAET 271
>gi|361069807|gb|AEW09215.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 67.4 bits (163), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 1159 PNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEF------GNGIGQSPPLVVNPI 1212
PNC ACP+R +CKHFASA SAR L E T+ N S PL P+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKESSSDTNPLLTLPYKENENAPSTPL---PL 57
Query: 1213 PVIR--------IEADPVS--ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIG 1262
P I+ E P+ ES Q + CEPIIEEP +P P+ E+ + +++ ++
Sbjct: 58 PTIQQDVNIEKPAEVLPLQLLESNPQDHKCEPIIEEPTTPEPEIIENTNTIVEECAYT-- 115
Query: 1263 DIEEIPTLRL 1272
D +EIP ++L
Sbjct: 116 DPDEIPVIKL 125
>gi|399575316|ref|ZP_10769074.1| endoiii-related endonuclease [Halogranum salarium B-1]
gi|399239584|gb|EJN60510.1| endoiii-related endonuclease [Halogranum salarium B-1]
Length = 265
Score = 67.4 bits (163), Expect = 7e-08, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 30/174 (17%)
Query: 1007 ADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDL-EWLRNVPPDKVKEYLL 1061
A++SE+A+ I+ G N +I G +E ++ E G+ + E++R P V+ LL
Sbjct: 93 AEQSELAETIQSAGLYNQKSEMIVGAAEEIVD---EFGGADEFDEFVREEDPQTVRTRLL 149
Query: 1062 DIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+I G+G K+ +CV L S + FPVD +V RIA R+G P ++ HL ++ P
Sbjct: 150 EIHGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEEVREHLERDVPA- 208
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
+K + H MI FG+ +C R P C ACPL C
Sbjct: 209 ---------------EKCGFG-HTAMIQFGREYCTARKPACLDGPEACPLYDLC 246
>gi|389846321|ref|YP_006348560.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|448616059|ref|ZP_21664769.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|388243627|gb|AFK18573.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|445750714|gb|EMA02151.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
Length = 268
Score = 67.0 bits (162), Expect = 7e-08, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ AD I DAI+ G N + I+ ++ GS D ++R P V++
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNQKSKLIQGVAEEVLADFGSEDDFDRYVREADPSTVRDR 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL+++G+G K+ +CV L + + FPVD +V RIA RLG P + L +E P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGVAPADADHEGVRAALEREVP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
+K + H MI FG+ FCK R P C CP+ C+
Sbjct: 210 A----------------EKCGFG-HTAMIQFGREFCKARKPVCLDGKDECPMADVCEKVG 252
Query: 1175 SAVASARFALPGPSE 1189
VA P ++
Sbjct: 253 VDVAGQSVVDPAAAD 267
>gi|406886945|gb|EKD33865.1| hypothetical protein ACD_75C02568G0003 [uncultured bacterium]
Length = 223
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+ +E + EIA IK G N+ AGR++ LN + E H L+ +E
Sbjct: 67 MTYETLSLCSAEEIAVYIKPAGYYNLKAGRLRNLLNMIAE-HYDGQLDCFLQEKLAVARE 125
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LLD++G+G ++ + + L S H F VD+ R+ R V + +Y
Sbjct: 126 RLLDVKGIGPETADSILLYSCGHPIFVVDMYTHRVFSRHNLVAEE-----------TDYH 174
Query: 1119 VMDKIQM-YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
M + M +L P D E H ++ FCKK +P C CPLRG
Sbjct: 175 AMQALFMDHLSP-----DPVLFNEFHALVVRVAATFCKKTNPQCETCPLRG 220
>gi|15805952|ref|NP_294652.1| endonuclease III [Deinococcus radiodurans R1]
gi|6458651|gb|AAF10505.1|AE001945_9 endonuclease III, putative [Deinococcus radiodurans R1]
Length = 338
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
++N+ Q+ W++L Y E D D + E+ + A G + A
Sbjct: 135 QQNTRRVAQRQWEVLTATYPQWEAALLDGPDGI---------EATLKSAGG--GLSRMKA 183
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPP-----DKVKEYLLDIEGLGLKSVECVRLLSLQH 1081
I L L E HG + L +LR P ++ ++ L + G+G K+V V L L+
Sbjct: 184 DYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRR 243
Query: 1082 IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYE 1141
A PVD N+ R A R L+ +P + H ++ + + + D +T +
Sbjct: 244 PAMPVDGNMERAAKR-----LELVPAAWNSHKVERW----------YAEVMPADWETRFA 288
Query: 1142 LHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LH + G+ C+ + P C CPLR C
Sbjct: 289 LHISGVRHGRDTCRSKHPLCPQCPLREFC 317
>gi|167628251|ref|YP_001678750.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
gi|167590991|gb|ABZ82739.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
Length = 231
Score = 67.0 bits (162), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D A+ A ++A ++ N A R++ F R+V+ +G LE L ++ ++++
Sbjct: 61 LDISALAEAPREQVARLVRSTRYYNQKAERLQGFARRIVDEYGG-RLENLLSLEAGELRK 119
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LLDI+G+G ++ +C+ L Q F VD RI RLG+ E
Sbjct: 120 RLLDIKGIGKETADCIILYGAQQPIFVVDAYTRRIFSRLGY--------------FSEKV 165
Query: 1119 VMDKIQMYLWPRL---CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
D++Q + RL YL Q E H Q+ G +C + P+C CPL C ++
Sbjct: 166 GYDEMQAFFAERLEPDLYLFQ----EYHAQIDGLGNRYCLAKGPSCAECPLGDCCTYY 219
>gi|390601386|gb|EIN10780.1| DNA glycosylase [Punctularia strigosozonata HHB-11173 SS5]
Length = 359
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 986 STGEERSHDK-MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
STG +RS D ++ A+ A + DAI+ G N AG I+ L + HG
Sbjct: 133 STGAKRSLDAAFGRNNFAAIADAPRERVVDAIRHGGLANKKAGVIQNLLKEIKARHGDYS 192
Query: 1045 LEWLRNVPP------DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
L+ L + P D++ L+ +G+G K+ CV L L+ +F VD +V R++ LG
Sbjct: 193 LQHLASRPSKSALSDDEIMHELVSYDGVGPKTASCVLLFCLERPSFAVDTHVFRLSKMLG 252
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
WVP + HL P K Y LH + G++
Sbjct: 253 WVPAKSDRVLAQAHLDARIPGELK-----------------YGLHCGFVKHGRV-----C 290
Query: 1159 PNCGACPLRG---EC 1170
P C A P G EC
Sbjct: 291 PACKAGPSGGGKVEC 305
>gi|42557689|emb|CAF28664.1| putative endonuclease III [uncultured crenarchaeote]
Length = 219
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 27/178 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D + + A+ +I D+I G NI A RIK+ + L+E S VP + E
Sbjct: 69 DIDGISKAELKDIRDSIHSIGFYNIKAKRIKQVVQLLIEKFDS-------KVPSNL--EE 119
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL + G+G K+ CV + + A PVDV+V RI+ RLG V + + E +
Sbjct: 120 LLTLPGVGRKTANCVLVYAFNQPAIPVDVHVHRISNRLGIVNTRKVEET-------ELEL 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
+ I +W E++ +T+G+ C P C C L+ CK + S V
Sbjct: 173 CNIIDKEMW-----------IEVNDTFVTYGQNVCLPIKPKCNICQLKKMCKFYKSNV 219
>gi|227828269|ref|YP_002830049.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|229579909|ref|YP_002838308.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238620462|ref|YP_002915288.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
gi|227460065|gb|ACP38751.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|228010624|gb|ACP46386.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238381532|gb|ACR42620.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
Length = 233
Score = 66.6 bits (161), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + AD S+I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMN---------- 167
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+Y ++ L+ L +LH+ +I G+ CK R P C +C ++ C+++
Sbjct: 168 -AKYELISSTLKELF------SAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|227831027|ref|YP_002832807.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284998523|ref|YP_003420291.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
gi|227457475|gb|ACP36162.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284446419|gb|ADB87921.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
Length = 233
Score = 66.6 bits (161), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + AD S+I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMN---------- 167
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+Y ++ L+ L +LH+ +I G+ CK R P C +C ++ C+++
Sbjct: 168 -AKYELISSTLKELF------SAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|359417776|ref|ZP_09209845.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
gi|358031869|gb|EHK00704.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
Length = 215
Score = 66.6 bits (161), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D+E +R AD+ E+ D I+ G A RI+E LN + E GS +E+L + D+ K++
Sbjct: 61 DFEEIRYADKEELIDTIRIAGLGPTKAERIQEALNIIYEEEGSYSVEFLDELSLDEGKKW 120
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L DI G+G K+ + + PVD +V R+A R G VP H L ++ P
Sbjct: 121 LTDIPGIGPKTASVILGFHFKKPTIPVDTHVHRLANRYGLVPEGSSRKRTHDILEEKVP- 179
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
D+I+ Y H +I G+ CK C
Sbjct: 180 -DEIK---------------YSFHRLLIEHGRAECKASKDEC 205
>gi|307111853|gb|EFN60087.1| hypothetical protein CHLNCDRAFT_14787, partial [Chlorella variabilis]
Length = 56
Score = 66.2 bits (160), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
+ LEWLR+ P + + YL++I GLG KSV C+ LL L FPVD NVGRI R WV
Sbjct: 1 LSLEWLRDAPDEVARNYLMNINGLGRKSVGCIMLLCLGKKEFPVDTNVGRICAR--WV 56
>gi|55376682|ref|YP_134533.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|448642537|ref|ZP_21678496.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|55229407|gb|AAV44827.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|445759337|gb|EMA10615.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 233
Score = 66.2 bits (160), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+AD I+ G + A RI+ L + E G+ L +L +P D+ K
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V VD +V R++ R G V H L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
D+ T Y LH +IT G+ FC RSP+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDCA 220
>gi|448651578|ref|ZP_21680628.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445770458|gb|EMA21521.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 233
Score = 66.2 bits (160), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+AD I+ G + A RI+ L + E G+ L +L +P D+ K
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V VD +V R++ R G V H L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
D+ T Y LH +IT G+ FC RSP+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDCA 220
>gi|389690704|ref|ZP_10179597.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
gi|388588947|gb|EIM29236.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
Length = 255
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
DW A+ A E+ + I+ A R++ L + E HGS+ L++L +P D+ +
Sbjct: 65 ADWRAMMDAPTEEVEETIQGVTWPEQKAPRLQAVLRAIEERHGSLSLDFLDTMPVDEARA 124
Query: 1059 YLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
+L I G+G K+ V S L+ A PVD + R+A R G +P G H L
Sbjct: 125 WLESIPGVGPKTSAAVLSFSKLRKAALPVDSHHHRVAQRTGLIPQSTAVGPSHAVLAALL 184
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P W D + +Y+ H M+ G+ C +SP C C + C
Sbjct: 185 P-------EDW------DAQQVYDHHEVMMLHGQRCCFFKSPACERCAILDLC 224
>gi|448625246|ref|ZP_21671013.1| endonuclease III [Haloferax denitrificans ATCC 35960]
gi|445749008|gb|EMA00454.1| endonuclease III [Haloferax denitrificans ATCC 35960]
Length = 258
Score = 66.2 bits (160), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLE-WLRNVPPDKV 1056
E++ AD I DAI+ G N +I G +E L + D + ++R P V
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSKLIQGVAEEVL---ADFGSEADFDRYVREEAPATV 146
Query: 1057 KEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L +
Sbjct: 147 RDRLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALER 206
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECK 1171
+ P D+K + H MI FG+ FCK R P C ACP+ C+
Sbjct: 207 DIP----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMADVCE 249
>gi|426195516|gb|EKV45446.1| hypothetical protein AGABI2DRAFT_44066, partial [Agaricus bisporus
var. bisporus H97]
Length = 234
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP------ 1053
++EA+ A + ++ DAI+ G N A I+ L + E HGS L+ L P
Sbjct: 81 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 140
Query: 1054 ----DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
D++ + LL +G+G K+ CV L + +FPVD +V R++ LGW+P
Sbjct: 141 ALRDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIP 192
>gi|409074630|gb|EKM75023.1| hypothetical protein AGABI1DRAFT_24137, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 235
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP------ 1053
++EA+ A + ++ DAI+ G N A I+ L + E HGS L+ L P
Sbjct: 82 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 141
Query: 1054 ----DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
D++ + LL +G+G K+ CV L + +FPVD +V R++ LGW+P
Sbjct: 142 ALGDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIP 193
>gi|119872647|ref|YP_930654.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
gi|119674055|gb|ABL88311.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
Length = 222
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
++ ++ E++ E E+A+ IK G A +K L I + L + +
Sbjct: 58 RLGTITPESLNKMSEGELAELIKPAGMYRQRARVLKNLAETF--LKYDITPQRLLEMGAE 115
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ + +LL + G+G K+ + + L++L AFPVD ++ RIA R G +
Sbjct: 116 RARAFLLTLPGVGKKTADVI-LVNLGLPAFPVDTHITRIARRWG--------------IG 160
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
K Y D+I + RL Q ELH ++I FG+ CK R+P C CP+ C +
Sbjct: 161 KSY---DEISRWFIERL---PQHKYLELHLKLIQFGREICKARNPKCDVCPIGQRCPSYK 214
Query: 1175 SA 1176
SA
Sbjct: 215 SA 216
>gi|385776592|ref|YP_005649160.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
gi|323475340|gb|ADX85946.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
Length = 233
Score = 65.9 bits (159), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + AD S I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDADLSNIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMN---------- 167
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+Y ++ L+ L +LH+ +I G+ CK R P C +C ++ C+++
Sbjct: 168 -AKYELISSTLKELF------SAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|429858184|gb|ELA33014.1| base excision dna repair protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 309
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 980 LLRRIYS--TGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 1037
L+R I S T + S S+D EA++C S + + I LN++
Sbjct: 159 LVRTILSQNTSDTNSTRAKRSMDDEAIKCGGLSAVKSKV------------IISILNQVK 206
Query: 1038 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1097
E +G L+ L + + + L+ +G+G K+ CV L LQ +F VD +V RI L
Sbjct: 207 EKYGKYSLDHLFSASNEDAMQELISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLL 266
Query: 1098 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
GW P + H HL P DK +++
Sbjct: 267 GWRPKSASRDETHAHLDVRIPDEDKYGLHI 296
>gi|114566352|ref|YP_753506.1| HhH-GPD [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337287|gb|ABI68135.1| DNA-3-methyladenine glycosylase III [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 222
Score = 65.9 bits (159), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D+ A+R E E+AD IK A R+K L+ + E +G D++ + + P +++
Sbjct: 59 LDFPALRSIAEEELADFIKPALYHRQKARRLKILLDFIAENYGG-DIDLMFSEPLPQIRA 117
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV----PLQPLPGDLHIHLL 1114
LL + G+G ++ + + L + + F VD RI RLGWV + + G + HL
Sbjct: 118 RLLALWGIGPETADSILLYAGNYPVFVVDAYTIRIFTRLGWVEDKCSYEKMQGLMQNHL- 176
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
PV D + E H ++ G +CKK+ C CPL C +
Sbjct: 177 ---PV---------------DTQIYNEYHALLVALGANYCKKKKALCQECPLAEYCPY 216
>gi|119719059|ref|YP_919554.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
gi|119524179|gb|ABL77551.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
Length = 236
Score = 65.5 bits (158), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 33/210 (15%)
Query: 969 NSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGR 1028
N +NT+ + +++ EER V+ E +R A SE+A+AI+ G Q A
Sbjct: 57 NENNTL--------KAFASLEERV-----GVECEKIRKAGLSELAEAIRPAGLQEQKAKA 103
Query: 1029 IKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDV 1088
IK+ + L E +G D+ L + ++V L IEG+G K+++ V L + + P+D
Sbjct: 104 IKQVASLLYEKYGC-DIGKLLSRGVEEVIRELKQIEGIGDKTID-VLLANYGYPVLPIDT 161
Query: 1089 NVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMIT 1148
+V R++VRLG PG Y M K + LD H +I
Sbjct: 162 HVRRVSVRLGLAR----PG--------SYRAMQKSLHGFFREEARLDA------HLYLIK 203
Query: 1149 FGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
G+ C+ ++P C CPL C ++ ++ A
Sbjct: 204 LGRTLCRAKNPLCDECPLSDLCCYYRTSRA 233
>gi|84489308|ref|YP_447540.1| endonuclease III [Methanosphaera stadtmanae DSM 3091]
gi|84372627|gb|ABC56897.1| putative endonuclease III [Methanosphaera stadtmanae DSM 3091]
Length = 219
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + A +IA+ +++ G N+ A RIKE N L+E + V PD ++E LL
Sbjct: 69 EEIADAPVDDIANLVRQAGFYNVKAARIKEVSNILLEEYDG--------VVPDTLEE-LL 119
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ CV + Q A PVDV+V RI+ RLG V P D L + P
Sbjct: 120 KLPGVGRKTANCVLVFGFQKDAIPVDVHVHRISNRLGLVHTDK-PEDTEEVLREIVP--- 175
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
Q Y P ++ M+ FG+ CK +P CP C+ + S +
Sbjct: 176 --QEYWLP------------INDLMVQFGQNICKPINPQHIECPFTDLCQLYKSEL 217
>gi|383788526|ref|YP_005473095.1| DNA glycosylase [Caldisericum exile AZM16c01]
gi|381364163|dbj|BAL80992.1| DNA glycosylase [Caldisericum exile AZM16c01]
Length = 241
Score = 65.5 bits (158), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D E+++ IKE G + A R+K FL+ + + +L L ++ + ++ LL+I+G+G
Sbjct: 79 DIQELSNYIKESGFYRLKAQRLKNFLDFFKKY--NFELLDLTHIEIENLRNELLNIKGVG 136
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + L +L+ F VD R AVR G +L+ D+I++
Sbjct: 137 KETADSIILYALEKPIFVVDNYTKRFAVRFG--------------ILENMSSYDEIRLLF 182
Query: 1128 WPRLCYLDQKT----LYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L ++K E+H ++ GK FCKK PNC ACPL C
Sbjct: 183 EDALKSENEKETLIRFKEMHALIVELGKNFCKKE-PNCSACPLGNLC 228
>gi|413945494|gb|AFW78143.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 426
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 963 KTTPKKNSDNTVQQDWDLLRR-IYSTGE--ERSHDKMDSVDWEAVRCADESEIADAIKER 1019
+TT KN++N DW+ LRR S G+ +RS ++ DS+DWEAVRCAD I+ AI+ER
Sbjct: 355 RTTTAKNTENF---DWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCADVRRISHAIRER 411
Query: 1020 GQQNIIAGRIK 1030
G N++A RI+
Sbjct: 412 GMNNVLAERIQ 422
>gi|51892440|ref|YP_075131.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51856129|dbj|BAD40287.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 232
Score = 65.1 bits (157), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 17/185 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ + + E+ + G + I AG + L + G++ LE LR P D+ +L
Sbjct: 57 WDGLLGLTQVELVRLLWGSGLEEIRAGHLLAVAGLLRDRFGAVTLEPLRQWPDDECLAFL 116
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ + G+G+K+ CV L L FP D + R+ R+G + + L P
Sbjct: 117 MSLPGMGMKTALCVMLYGLDRPVFPADAHCIRVLKRMGVIDAR----------LAHRPAQ 166
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
++ + L Y+ LH ++ G+ C R P C C + C +A +A
Sbjct: 167 RELARIVPGHLGYV-------LHVNLVAHGQQICTARCPRCAECVVANYCLLGEAAQQAA 219
Query: 1181 RFALP 1185
LP
Sbjct: 220 EGQLP 224
>gi|410464085|ref|ZP_11317553.1| putative endonuclease III-like protein [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409982800|gb|EKO39221.1| putative endonuclease III-like protein [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 216
Score = 65.1 bits (157), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D A+ A +A+ I+ G + AGR+K + +VE G DL L + ++
Sbjct: 60 LDPYALHAASLEAVAEPIRPAGHFRVKAGRLKNLMALIVEDLGG-DLTALAGYDLGQARD 118
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL ++G+G ++ + + L L AF VD RI R G VP +L + P
Sbjct: 119 KLLAVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLVPEDAGYDELRELFMDALP 178
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
+ + +Y E H ++ G +C+ R+P C ACPL
Sbjct: 179 --EDVGLY-------------NEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|126466261|ref|YP_001041370.1| HhH-GPD family protein [Staphylothermus marinus F1]
gi|126015084|gb|ABN70462.1| HhH-GPD family protein [Staphylothermus marinus F1]
Length = 228
Score = 65.1 bits (157), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE---YLLDIEGLG 1067
++ +A+K G N A RI E E + +L L V K++E YL+++ G+G
Sbjct: 78 KLVEALKPAGMYNQRAQRIVELAKIFTERNVKEELRKL--VEEGKLREARKYLVNLPGVG 135
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
LK+ + V L+ + FPVD ++ R++ RLG++ Y + + M
Sbjct: 136 LKTADVVLLMYYKQPVFPVDTHIRRVSKRLGYIEKD------------NYETISRWWMK- 182
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
L E H +IT G+ CK R P C CP+ CK++ +
Sbjct: 183 -----QLKPNEYLEAHLLLITHGRKTCKARKPLCDKCPINKYCKYYCKTI 227
>gi|452208019|ref|YP_007488141.1| endonuclease III [Natronomonas moolapensis 8.8.11]
gi|452084119|emb|CCQ37452.1| endonuclease III [Natronomonas moolapensis 8.8.11]
Length = 271
Score = 64.7 bits (156), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEGLGL 1068
E+A+ I G N + RI + R++ +G ++R PP +V+E LL++ G+G
Sbjct: 97 ELAETISSAGLYNQKSKRIIDIAERVLAEYGDTAGFDRFVREEPPSEVRETLLEMNGVGP 156
Query: 1069 KSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ +CV L + + FPVD +V RIA RLG P V D ++ +
Sbjct: 157 KTADCVLLFAGGRGGVFPVDTHVHRIARRLGIAPADA----------DHEAVRDALETAV 206
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
C H MI FG+ +C R+P C ACP+ C+
Sbjct: 207 PEEKCGFG-------HTAMIQFGREYCTARTPACLEDPDACPMADVCEQ 248
>gi|170101314|ref|XP_001881874.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643229|gb|EDR07482.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 308
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 31/195 (15%)
Query: 990 ERSHDKMDSV----DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL 1045
R+ +D+V ++ A+ A + DAI+ G N A I+ L+ + HG L
Sbjct: 120 HRAKTSLDAVFGRNNFVAIAQAPRERLVDAIRSGGLANKKAATIQNLLHSIRGKHGEYSL 179
Query: 1046 EWL-------RNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
+ L R + D++ + L+ +G+G K+ CV L L +F VD +V R++ LG
Sbjct: 180 QHLAAAESSGRRMSDDEIMKELISYDGVGPKTASCVLLFCLGRNSFAVDTHVFRLSKLLG 239
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK--K 1156
WVP + HL P D+++ Y+LH MI G++ CK K
Sbjct: 240 WVPQKSDRVLAQAHLDIRVP--DELK---------------YDLHVLMIQHGRL-CKGCK 281
Query: 1157 RSPNCGACPLRGECK 1171
++ + AC L+ K
Sbjct: 282 KTGSGQACILKTYLK 296
>gi|229585498|ref|YP_002844000.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
gi|228020548|gb|ACP55955.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
Length = 233
Score = 64.7 bits (156), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + A+ S+I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDANLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMN---------- 167
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+Y ++ L+ L +LH+ +I G+ CK R P C +C ++ C+++
Sbjct: 168 -AKYELISSTLKELF------SAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|292655041|ref|YP_003534938.1| endonuclease III [Haloferax volcanii DS2]
gi|448292657|ref|ZP_21483063.1| endonuclease III [Haloferax volcanii DS2]
gi|291372380|gb|ADE04607.1| endonuclease III [Haloferax volcanii DS2]
gi|445572413|gb|ELY26953.1| endonuclease III [Haloferax volcanii DS2]
Length = 268
Score = 64.7 bits (156), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLE-WLRNVPPDKV 1056
E++ AD I +AI+ G N +I G +E L + D + ++R P V
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEEVL---ADFGSEADFDRYVREEAPATV 146
Query: 1057 KEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L +
Sbjct: 147 RDRLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALER 206
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECK 1171
+ P D+K + H MI FG+ FCK R P C ACP+ C
Sbjct: 207 DIP----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMTDVCD 249
Query: 1172 HFASAVASARFALPGPSE 1189
A+ P ++
Sbjct: 250 MVGVDAAAQSVTDPAAAD 267
>gi|367471322|ref|ZP_09470967.1| Endonuclease III [Patulibacter sp. I11]
gi|365813601|gb|EHN08854.1| Endonuclease III [Patulibacter sp. I11]
Length = 248
Score = 64.7 bits (156), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS---------------ID 1044
DWE V A EI AI+ G + + RI L+ + E G +D
Sbjct: 75 DWELVARAPVEEIEAAIRPGGISKVKSVRIAAILDAIAERSGPTARALGLDPAPDASPLD 134
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG-WVPLQ 1103
L W+ P +++L ++ G+G K+ CV L + PVD +V R+ RL + P
Sbjct: 135 LTWMEAAPVAAGRDFLCELPGVGRKTAACVLLFAYGLHDVPVDTHVQRVGTRLALFRPGA 194
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGA 1163
PL +LH +L P + ELH ++ G+ C R P C
Sbjct: 195 PL-DELHDEMLWITP-----------------EGAGLELHVNLLRHGRRTCHARRPACSE 236
Query: 1164 CPLRGEC 1170
C LR C
Sbjct: 237 CALRRMC 243
>gi|374308995|ref|YP_005055425.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
gi|358751005|gb|AEU34395.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
Length = 261
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+WE+VR A +EI AI + A R+K L + E +GS+ L++L DK++ +
Sbjct: 85 NWESVRDATVAEIERAIAVVTFPEVKAPRLKAALMGITERYGSLTLDFLARYRTDKIRSW 144
Query: 1060 LLDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L EG+G + S V +L+ A +D N R+ RL VP +
Sbjct: 145 LEQFEGVGPQVSAAVVNFSTLRRRAISIDANHLRVVQRLCVVP------------RADAA 192
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+ ++ M L P D + L E H + G+ C P C ACPL C
Sbjct: 193 ITEERLMRLVPE--TWDAEMLDEHHSLVKLHGQTLCTFSEPRCEACPLLDICPTGKRNTG 250
Query: 1179 SARFALPGPSE 1189
+ P P +
Sbjct: 251 ELKLTAPTPGD 261
>gi|222099288|ref|YP_002533856.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
gi|221571678|gb|ACM22490.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
Length = 396
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
IA I+ G NI A R+K L L E + +L+ L+ +P ++E LL I+G+G ++
Sbjct: 248 IAHLIRPAGFFNIKAKRLKALLEFLREY--NFNLKLLKRMPLGALRELLLKIKGIGKETA 305
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
+ + L +L+ F VD R+ R+ + L K+Y + K+ M +P
Sbjct: 306 DAILLYALEKPIFVVDSYTKRLLARIFNIEL------------KDYDEIQKLFMSCYPH- 352
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D + ELH ++ K FC K +P C CPL+ +C
Sbjct: 353 ---DVRLYQELHGLIVEHAKRFCSK-NPKCRECPLKKKC 387
>gi|386002355|ref|YP_005920654.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
gi|357210411|gb|AET65031.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
Length = 133
Score = 64.3 bits (155), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
IDLE+LR ++ +++L+ + G+G K+ V L + + PVD +V R++ RLG+VP
Sbjct: 13 IDLEFLRGADAEEARQFLVSLPGVGPKTAAVVLLFAFRMPLLPVDTHVNRLSRRLGFVPA 72
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
++I + PR Y H +I G+ C+ RSP+CG
Sbjct: 73 G-----------ASIEEAERILEEITPREKYC------SFHVNLIRHGRAVCRARSPSCG 115
Query: 1163 ACPLRGEC 1170
AC L C
Sbjct: 116 ACVLAEVC 123
>gi|258570499|ref|XP_002544053.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904323|gb|EEP78724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1143
Score = 64.3 bits (155), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE---------------LHGS 1042
SVDW VR A EI DAIK G +I + IKE L + E HG+
Sbjct: 244 SVDWNKVRHAPVGEIRDAIKSGGLADIKSKHIKEILTMVYEENIARRNELQTDGKAKHGN 303
Query: 1043 ---------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
+ L+++ + D+ + + G+G+K+ CV L L+ F VD +V R+
Sbjct: 304 RVDHADEHMLSLDYMHALSKDEAMQRFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRL 363
Query: 1094 AVRLGWVP 1101
+ LGW+P
Sbjct: 364 SKWLGWIP 371
>gi|116747801|ref|YP_844488.1| HhH-GPD family protein [Syntrophobacter fumaroxidans MPOB]
gi|116696865|gb|ABK16053.1| DNA-3-methyladenine glycosylase III [Syntrophobacter fumaroxidans
MPOB]
Length = 222
Score = 64.3 bits (155), Expect = 5e-07, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+ +EA+ E +A+ I+ G N A ++K F + E G L+ D ++
Sbjct: 62 LSFEALCAVPEPLLAELIRSSGYYNQKARKLKAFCRHVCET-GHAGLDGFLAQDTDTLRS 120
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL I G+G ++ + + L + +F VD R+ R GWV +E P
Sbjct: 121 ELLRIRGVGPETADSIVLYAAHKPSFVVDTYTHRVFSRHGWV--------------QESP 166
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
D+++ + L D ELH ++ G +FC+K +P CG CPL G
Sbjct: 167 SYDELRGFFMDCL-EPDVGLFQELHALLVRTGHLFCRK-TPRCGGCPLEG 214
>gi|383318935|ref|YP_005379776.1| EndoIII-related endonuclease [Methanocella conradii HZ254]
gi|379320305|gb|AFC99257.1| putative EndoIII-related endonuclease [Methanocella conradii HZ254]
Length = 291
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 18/181 (9%)
Query: 990 ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLR 1049
R + +D + CAD+ E+ + I+ G A + E ++ E G LEW+R
Sbjct: 117 HRLQRRYKGIDVHKMACADKRELEELIRFSGPYK--ASYMIECSRQIEERWGG-SLEWMR 173
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
P D+ + LL + G+G K+ +CV L SL H PVD ++ R++ RLG L GD
Sbjct: 174 RAPTDEARRALLSLHGVGPKTADCVLLFSLGHSVVPVDTHICRVSQRLG---LSMSMGDS 230
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ V + ++ L K H +I G+ FCK +P CP+
Sbjct: 231 EA---AKRRVKEDLERGL---------KMPGMAHLLIINLGRDFCKALAPLHHICPVEEL 278
Query: 1170 C 1170
C
Sbjct: 279 C 279
>gi|448652011|ref|ZP_21681024.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445769414|gb|EMA20488.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 238
Score = 64.3 bits (155), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEE-RSHDKMDSVDW-EAVRCADESEIADAIKERGQQNI 1024
+ SD Q D L Y GE+ S +DS D A+ AD+ E+A+ I G N
Sbjct: 64 QNTSDKASQSAHDDLMARYGGGEDANSEGDIDSTDLARALADADQPELAETISSAGLYNQ 123
Query: 1025 IAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQ 1080
+ RI R+ E +G D ++R+ +KV+ LLD+ G+G K+ +CV L + +
Sbjct: 124 KSERIIALAQRICEEYGGEAGFD-AFVRDSDSEKVRSTLLDMNGVGPKTADCVLLFAGGR 182
Query: 1081 HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
FPVD +V RIA R+G P + +L ++ P
Sbjct: 183 GGVFPVDTHVHRIARRIGLAPADAAHETVRAYLERDVP 220
>gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1]
gi|116062229|dbj|BAA79061.2| endonuclease III [Aeropyrum pernix K1]
Length = 229
Score = 64.3 bits (155), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A ++ +AI+E G A +K +V G +L PP++++E L+
Sbjct: 76 EAILEASYDDLVEAIREAGLPRQKASALKALAEAVVRWGGE---NYLLKAPPEELREKLM 132
Query: 1062 DIEGLGLKSVECVRLLSLQHIA---FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
I G+G K+ + LSL A F VD + R+A R G L+ E
Sbjct: 133 SIRGIGPKTADV--FLSLVRKAPGVFAVDTHAARVARRWG--------------LVGEKA 176
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D+I L+ Y E H +I G+ +CK R P C CPLR C
Sbjct: 177 GYDEISKALYN---YFGPGNSEEAHRLIIALGRTYCKARRPRCRECPLRSVC 225
>gi|448627973|ref|ZP_21672205.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445758595|gb|EMA09901.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 233
Score = 63.9 bits (154), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+EA+ AD ++AD I+ G + A RI+ L + E G+ L +L +P ++ K
Sbjct: 74 DFEAIESADHDKLADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPAEEAKG 133
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V VD +V R++ R G V H L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDALIP 193
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG--ACPLRGECK 1171
D+ T Y LH +IT G+ FC R P+C C CK
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARRPDCSNPVCERYCSCK 231
>gi|297801424|ref|XP_002868596.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
gi|297314432|gb|EFH44855.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
Length = 93
Score = 63.9 bits (154), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 1413 FPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGS 1455
FPLNGTYFQ NEVFAD+++S +PI+VPR I +L R I FGS
Sbjct: 5 FPLNGTYFQTNEVFADYDSSINPIDVPRKLIWDLDRRIAYFGS 47
>gi|333911156|ref|YP_004484889.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
gi|333751745|gb|AEF96824.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
Length = 220
Score = 63.9 bits (154), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K + +D + D ++ IK G NI A R+K + +V+ +GS + + +
Sbjct: 52 KENLIDERKILEIDTEKLKKLIKPAGFYNIKAERLKNITHHIVKNYGSTENLAKLPIKLE 111
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+++ LL+++G+G ++ + + L +L F VD RI RLG I
Sbjct: 112 DLRKELLNVKGIGKETADSILLYALDRPIFVVDAYTKRIFSRLGV-----------IEGG 160
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+EY + I P+ D K E H ++ GK +CKKR+P C CPL C +
Sbjct: 161 EEYDEIRHIFEENLPK----DLKIYKEYHALIVELGKHYCKKRNPACEKCPLSDLCDY 214
>gi|424780567|ref|ZP_18207440.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842969|gb|EKU27416.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 218
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 1022 QNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH 1081
+NIIA +LVE G VP D+ + L+ + G+G K+ V ++
Sbjct: 88 KNIIACS-----QKLVEEFGG-------KVPADR--KQLMSLPGVGRKTANVVLSVAFNI 133
Query: 1082 IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYE 1141
AF VD ++ RIA RL VPL + ++K + P+ +T
Sbjct: 134 PAFAVDTHIQRIAKRLQIVPLDASVDE-----------VEKTITSIMPK------ETWNH 176
Query: 1142 LHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASAR 1181
LH+Q+I FG+ C + P C CP EC ++ S VA +
Sbjct: 177 LHHQLIYFGRYLCTAKKPKCDQCPFTKECLYYESEVAEKK 216
>gi|356565037|ref|XP_003550751.1| PREDICTED: DEMETER-like protein 2-like [Glycine max]
Length = 172
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
A IK L L E G + LE+LR++ D+VK L +G+G K+V CV + +LQ FP
Sbjct: 30 ASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACVLMFNLQQDDFP 89
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
VD ++ IA +GWVP +IHL + P
Sbjct: 90 VDTHIFEIAKTMGWVPSVADKNKSYIHLNQRIP 122
>gi|217076701|ref|YP_002334417.1| nth endonuclease III [Thermosipho africanus TCF52B]
gi|217036554|gb|ACJ75076.1| nth endonuclease III [Thermosipho africanus TCF52B]
Length = 203
Score = 63.5 bits (153), Expect = 8e-07, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 27/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E +I + IK G A RI E +VE + I PD ++E LL + G+
Sbjct: 61 AKEEDIYELIKPAGLYRQKAKRIIEISKIIVEKYSGI--------VPDSLEE-LLKLPGV 111
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V +S A VD +V RI+ RLGWV + P + E+ +M+ +
Sbjct: 112 GRKTANIVLYVSFSKSALAVDTHVHRISNRLGWVNTKT-PEE------TEFKLMEILPKN 164
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
LW ++ M+ FGK CK SPNC CP+ CK
Sbjct: 165 LWG-----------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|73668473|ref|YP_304488.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395635|gb|AAZ69908.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 204
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E VR AD SEI IK+ G + AGRIKE L+E +G VP D E LL
Sbjct: 59 EMVR-ADVSEIETLIKDVGFYRVKAGRIKEISRLLLEKYGG-------RVPDDM--EALL 108
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++ G+G K+ CV + A VD +V RI+ RLG V + +P + L K +P
Sbjct: 109 ELPGVGRKTANCVLAHAFLKDALAVDTHVHRISNRLGLVETK-VPEETETELKKIFP--- 164
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
QK ++ ++ G+ C+ SP C C L C
Sbjct: 165 --------------QKYWRHVNLLLVKLGQNTCRPISPRCKTCTLDDIC 199
>gi|328858824|gb|EGG07935.1| hypothetical protein MELLADRAFT_77474 [Melampsora larici-populina
98AG31]
Length = 371
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 983 RIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHG 1041
R YS ER + ++E +R + E+ + I+ G + I LN+++ + G
Sbjct: 183 RAYSKIIER----YGNANFEDIRKSGIKELTETIRVGGLAERKSKVIITILNQIISKGDG 238
Query: 1042 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+ L+ LR + ++V + L++ +G+G+K+ CV + L FPVD +V R++ LGWVP
Sbjct: 239 ILSLDKLRLMSDEQVMQELVEFDGVGIKTGACVSMFCLGRDTFPVDTHVHRLSKSLGWVP 298
Query: 1102 LQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ HL + P D K Y LH +I G+ C++ SP
Sbjct: 299 PKATRDQTFFHLNLQLPN---------------DLK--YALHILLIRHGQ-SCRQCSPTS 340
Query: 1162 GA 1163
A
Sbjct: 341 KA 342
>gi|257389114|ref|YP_003178887.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
gi|257171421|gb|ACV49180.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
Length = 270
Score = 63.5 bits (153), Expect = 8e-07, Method: Composition-based stats.
Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 36/229 (15%)
Query: 967 KKNSDNTVQQDWD-LLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNII 1025
+ SD Q D L+ R + GE+ + D AD+ +A+ I+ G N
Sbjct: 65 QNTSDKASQPAHDALMERYGADGEDLAATLAD---------ADQQRLAETIQPAGLHNQK 115
Query: 1026 AGRIKEFLNRLVELHG---SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQH 1081
+ I R+ E +G D ++R P V+ LLD++G+G K+ +CV L + +
Sbjct: 116 SETIVRLAGRVCEEYGFGAEFD-AFVRGGDPGDVRSALLDMKGVGPKTADCVLLFAGGRG 174
Query: 1082 IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYE 1141
FPVD +V RIA R+G P + L + P +K +
Sbjct: 175 GVFPVDTHVHRIARRMGLAPADADHEGVRAALEDDIPA----------------EKCGFG 218
Query: 1142 LHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALPG 1186
H MI FG+ +C R P C ACPL +C+ + A+ P
Sbjct: 219 -HTAMIQFGREYCSARKPACLDDPEACPLADQCEQLGVSPATGEVFDPA 266
>gi|167043370|gb|ABZ08073.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_ANIW141O9]
Length = 217
Score = 63.5 bits (153), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNR-LVELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
A ++ IK G ++ + RI E N L + HG VP D K L++I G
Sbjct: 72 AKAKDVEKIIKSVGFYHVKSRRIIEVANIILTKYHGK--------VPADIDK--LVEIPG 121
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ CV + + + A PVD +V RI+ RLG V + P + + L K+ P +
Sbjct: 122 VGRKTANCVLVYAFEKPAIPVDTHVHRISNRLGLVDTKT-PEETEMELRKKVP-----KK 175
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
Y P ++ + +G+ CK SP C C +R C +F + AS
Sbjct: 176 YWLP------------INNTFVMYGQNICKPISPMCSVCKIRNSCNYFKTKNAS 217
>gi|297527052|ref|YP_003669076.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus hellenicus
DSM 12710]
gi|297255968|gb|ADI32177.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus hellenicus
DSM 12710]
Length = 234
Score = 63.5 bits (153), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE---YLLDIEGLG 1067
++ +A+K G N A RI E E +++ E + + K++E YL+ + G+G
Sbjct: 78 KLIEALKPAGMYNQRAQRIIELAKIFTE--KNVEEELGKLIEEGKLREARKYLVSLPGVG 135
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
LK+ + V L+ FPVD ++ R+ RLG++ +Y + M
Sbjct: 136 LKTADVVLLMYYGQPVFPVDTHIRRVTKRLGYIGKD------------DYEAISSWWMK- 182
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
L E H +IT G+ CK R P C CP+R CK++
Sbjct: 183 -----QLKPNDYLETHLLLITHGRKTCKARKPLCNICPIRKYCKYY 223
>gi|419759441|ref|ZP_14285740.1| endonuclease III [Thermosipho africanus H17ap60334]
gi|407515451|gb|EKF50196.1| endonuclease III [Thermosipho africanus H17ap60334]
Length = 203
Score = 63.5 bits (153), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 27/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E +I + IK G A RI E +VE + I PD ++E LL + G+
Sbjct: 61 AKEEDIYELIKPAGLYRQKAKRIIEISKIIVEKYSGI--------VPDSLEE-LLKLPGV 111
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V +S A VD +V RI+ RLGWV + P + E+ +M+ +
Sbjct: 112 GRKTANIVLYVSFSKPALAVDTHVHRISNRLGWVNTKT-PEE------TEFKLMEILPKN 164
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
LW ++ M+ FGK CK SPNC CP+ CK
Sbjct: 165 LWG-----------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|449469507|ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucumis sativus]
Length = 234
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V A+ I DAI+ G + A IK L+ L + G + LE+LR++ D++K L
Sbjct: 143 WEDVLSAESKCIEDAIRCGGLASTKASCIKNILSSLSKRRGKLCLEFLRDLSIDEIKAEL 202
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNV 1090
+G+G K+V CV + +LQ FPVD +V
Sbjct: 203 STFKGIGPKTVACVLMFNLQKDDFPVDTHV 232
>gi|400601349|gb|EJP68992.1| base excision DNA repair protein [Beauveria bassiana ARSEF 2860]
Length = 361
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 24/189 (12%)
Query: 986 STGEERSHDKMDSV-----DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH 1040
S R+ MD+V WEA+ ++++ AI+ G + I + L + +
Sbjct: 186 SANSTRAKQSMDTVYGGSDQWEAIAAGGQAKLQRAIQSGGLAATKSRVIIDILAAVRAKY 245
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
G L+ L + E LL G+G K+ C+ L LQ +F VD +V R+ LGW
Sbjct: 246 GVYSLDHLFTAGDAEAMEELLAFPGVGPKTASCILLFCLQRPSFAVDTHVYRLTGVLGWR 305
Query: 1101 PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI--FCKKRS 1158
P + HL + P D+++ Y LH +I G+ C ++
Sbjct: 306 PYEATREQAQAHLDAKVP--DELK---------------YPLHVLLIAHGRTCSACNAKA 348
Query: 1159 PNCGACPLR 1167
C LR
Sbjct: 349 AAGQTCKLR 357
>gi|448572049|ref|ZP_21640138.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|448596871|ref|ZP_21654009.1| endonuclease III [Haloferax alexandrinus JCM 10717]
gi|445721082|gb|ELZ72751.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|445740752|gb|ELZ92257.1| endonuclease III [Haloferax alexandrinus JCM 10717]
Length = 268
Score = 63.2 bits (152), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS-IDLE-WLRNVPPDKVKEY 1059
E++ AD I +AI+ G N + I+ ++ GS D + ++R P V++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L ++ P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
D+K + H MI FG+ FC R P C ACP+ C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVCDMVG 252
Query: 1175 SAVASARFALPGPSE 1189
A+ P ++
Sbjct: 253 VDAAAQSVTDPAAAD 267
>gi|76802666|ref|YP_330761.1| repair DNA N-glycosylase / DNA-(apurinic or apyrimidinic site) lyase
[Natronomonas pharaonis DSM 2160]
gi|76558531|emb|CAI50123.1| endonuclease III [Natronomonas pharaonis DSM 2160]
Length = 268
Score = 63.2 bits (152), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEGL 1066
+ +A+ I G N + R+ +VE +G D ++ PPD+V+E LL++ G+
Sbjct: 95 QPTLAETISGAGLYNQKSTRLIALAEFVVETYGGADGFDGFVTEAPPDEVRETLLELNGV 154
Query: 1067 GLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
G K+ +CV L S + FPVD +V RIA R+G P + L + P
Sbjct: 155 GPKTADCVLLFSGGRDGVFPVDTHVHRIARRMGLAPADADHEAVRSALEADVP------- 207
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
+K + H MI FG+ +C R P C ACPL C
Sbjct: 208 ---------GEKCGFG-HTAMIQFGREYCTARKPACLDDPEACPLADRC 246
>gi|361069805|gb|AEW09214.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 1159 PNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEF------GNGIGQSPPLVVNPI 1212
PNC ACP+R +CKHFASA SAR L E T+ N S PL P+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKETSSDTNPMLTLPYKENENAPSTPL---PL 57
Query: 1213 PVIR--------IEADPVS--ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIG 1262
P I+ E P+ +S + + CEPIIEEP +P P+ E+ + +++ ++
Sbjct: 58 PTIQQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEECAYT-- 115
Query: 1263 DIEEIPTLRL 1272
D +EIP ++L
Sbjct: 116 DPDEIPVIKL 125
>gi|222444488|ref|ZP_03607003.1| hypothetical protein METSMIALI_00099 [Methanobrevibacter smithii DSM
2375]
gi|261350964|ref|ZP_05976381.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434053|gb|EEE41218.1| endonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860304|gb|EFC92602.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 208
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A ++ + I+ G + A RIKE L++ +G PD +KE L+++ G+
Sbjct: 69 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGG--------EVPDNLKE-LVELPGV 119
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV + + + A PVD +V RI+ R+G V + P + L K P
Sbjct: 120 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 172
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LW +L L M+ FG+ CK SP C CP+ C +
Sbjct: 173 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 207
>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
Length = 657
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 51/277 (18%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+K ++ Q +D L+R +++ WE + A E E+ + G
Sbjct: 67 RKTREDAYQATYDALKRRFAS-------------WEELLRAPEREVEAIVHRGGLGKRKT 113
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
+ L LV+ GS L + ++E+L + + KS C+ + S+ FPV
Sbjct: 114 ASLVGALQALVDRFGSCTLRPALQWKDEALEEFLCSLPEISRKSAYCIMMYSMGRSVFPV 173
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV--MDKIQMYLWPRLCYLDQKTLYE--- 1141
D +VGR+ RLG I+ + + +D Q+ Q+TL +
Sbjct: 174 DTHVGRVLQRLG------------IYKGTGFSLEGLDHKQL----------QRTLADVVP 211
Query: 1142 ------LHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTS 1195
LH ++ G+ CK +P C AC LR C H+ AS A P+ V
Sbjct: 212 PNLRRSLHINLVLHGREVCKAVAPACDACELRQLCSHYRDHEASRVEASDAPT----VVD 267
Query: 1196 EFGNGIGQSPPLVVNPIPVI-RIEADPVSESGYQINN 1231
F G S ++ ++ DPV+ +N+
Sbjct: 268 LFCGAGGLSEGFTRAGFRLVAAVDRDPVALKTLWLNH 304
>gi|260892299|ref|YP_003238396.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
gi|260864440|gb|ACX51546.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
Length = 240
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
+E E+A+ ++ G A ++ +V+ DL+ L N+P + ++ LL + G+
Sbjct: 82 CEEQELAEILRPVGLHRRKAKLLRTLAREVVDF----DLKALSNLPTFEARQRLLRLPGV 137
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + V LL L H FPVD ++ RI RL W + P ++IQ
Sbjct: 138 GPKTAD-VLLLHLGHPLFPVDTHIARITWRLSWA---------------KRPCYEEIQK- 180
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+W L + E H ++I +G+ C+ R P C C LR C
Sbjct: 181 VWMEL--FSPEDYQEAHLRLIQWGREICQARKPRCFTCFLRICC 222
>gi|380484040|emb|CCF40248.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 361
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
+ ++EA+ ++ DA++ G QN A + L+ + E HG DL+ L N ++
Sbjct: 187 TFNYEAIVEGGMDKLVDALRPGGMQNRKAKILMRLLHDVKERHGKWDLQHLFNASDEEAV 246
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
+ ++ GLG K C+ + L+ AF VD ++ RI GW P HL
Sbjct: 247 KEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHIYRITGLWGWRPKDASKELAQAHLDARI 306
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + Y LHYQ I G+ C AC G+ K
Sbjct: 307 P-----------------NEIKYALHYQFIVHGR--------QCPACRGNGDSK 335
>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 219
Score = 62.8 bits (151), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D + A+ D E+A+ I+ G NI A R++ FLN L + G ++E L+ D++
Sbjct: 58 DLLSARAMHALDTGELAELIRPAGYYNIKAARLRNFLNFLNDEAG-FEIESLKTQGMDEL 116
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ +L I G+G ++ + + L +L+ F VD R+ R G H +
Sbjct: 117 RSKVLSINGVGPETADSILLYALEMPTFVVDAYTYRMMDRHGLA-----------HEGID 165
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
Y + I M P D E H ++ GK +C+K++ C CPL+
Sbjct: 166 YHGLRSIFMDALPE----DVSLYNEFHALIVRVGKDWCRKKAGLCATCPLQ 212
>gi|403178239|ref|XP_003336685.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164069|gb|EFP92266.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 424
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 1000 DWEAVRCADESEIADAIKER--GQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKV 1056
++ A+R A S I +++ G + I LN + + L+ + LE+LR +P +
Sbjct: 136 NYHAIRRASVSSITAVLQDARVGLAARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEA 195
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
E L +G+G K+ CV L L FPVD +V RI LGW+P +P
Sbjct: 196 METLTSFKGVGAKTASCVLLFCLGRNFFPVDTHVFRITKALGWLPPRP 243
>gi|148642332|ref|YP_001272845.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
gi|148551349|gb|ABQ86477.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A ++ + I+ G + A RIKE L++ +G PD +KE L+++ G+
Sbjct: 71 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGG--------EVPDNLKE-LVELPGV 121
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV + + + A PVD +V RI+ R+G V + P + L K P
Sbjct: 122 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 174
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LW +L L M+ FG+ CK SP C CP+ C +
Sbjct: 175 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 209
>gi|220931064|ref|YP_002507972.1| HhH-GPD family protein [Halothermothrix orenii H 168]
gi|219992374|gb|ACL68977.1| HhH-GPD family protein [Halothermothrix orenii H 168]
Length = 224
Score = 62.8 bits (151), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 1013 ADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVE 1072
A IK G N+ A +IK F+N L E +G L+ + P K+++ LL++ G+G ++ +
Sbjct: 84 AKMIKPAGYYNMKARKIKAFINFLFEDYGG-SLDEMFQEPLSKIRDKLLEVYGIGPETAD 142
Query: 1073 CVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLC 1132
+ L + + F +D RI R+G++ ++ H L++ +MD +
Sbjct: 143 SILLYAGEFPVFVIDAYTKRIFSRIGYIE-----ENIGYHTLQKM-IMDNLPA------- 189
Query: 1133 YLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPL 1166
+ +Y E H ++ GK CKK +P C CPL
Sbjct: 190 ---RTGIYNEYHALLVALGKEICKKNNPLCEKCPL 221
>gi|383158249|gb|AFG61482.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158250|gb|AFG61483.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158251|gb|AFG61484.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158252|gb|AFG61485.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158253|gb|AFG61486.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158254|gb|AFG61487.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158255|gb|AFG61488.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158256|gb|AFG61489.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158257|gb|AFG61490.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158258|gb|AFG61491.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158259|gb|AFG61492.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158260|gb|AFG61493.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158261|gb|AFG61494.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158262|gb|AFG61495.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158263|gb|AFG61496.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158264|gb|AFG61497.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158265|gb|AFG61498.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 21/130 (16%)
Query: 1159 PNCGACPLRGECKHFASAVASARFALPGPSEKG-----IVTSEFG-NGIGQSPPLVVNPI 1212
PNC ACP+R +CKHFASA SAR L E ++T + N S PL P+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKESSSDINPMLTLPYKENENAPSTPL---PL 57
Query: 1213 PVIR--------IEADPVS--ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIG 1262
P I+ E P+ +S + + CEPIIEEP +P P+ E+ + +++ ++
Sbjct: 58 PTIQQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEECAYT-- 115
Query: 1263 DIEEIPTLRL 1272
D +EIP ++L
Sbjct: 116 DPDEIPVIKL 125
>gi|226356223|ref|YP_002785963.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226318213|gb|ACO46209.1| putative DNA-(apurinic or apyrimidinic site) lyase (Endonuclease III)
[Deinococcus deserti VCD115]
Length = 237
Score = 62.8 bits (151), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 18/189 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQ--QNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
WEA I ++ G + AG I L L E G++DL +R + + +
Sbjct: 54 WEAALLDGPDGIETVLRAAGGGLAQMKAGYIHGILVHLDERLGTLDLSAVRKLNDQEART 113
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G+K+ + L L A PVD N+ RIA RL VP + P
Sbjct: 114 LLEGLPGVGMKTASLILLFDLLRPALPVDTNIERIAKRLELVPQRWTP------------ 161
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+K++ + + + D H + G++ C+ R P C C LRG C A+ +
Sbjct: 162 --EKVERW-FDAVVRRDWAERATFHVAGVRHGRLTCRPRDPRCDQCVLRGLCPS-AALLG 217
Query: 1179 SARFALPGP 1187
F GP
Sbjct: 218 PDAFKAAGP 226
>gi|147919100|ref|YP_687169.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110622565|emb|CAJ37843.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 243
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYL 1060
E + A ES IAD I+ G A IK ++ E G++D ++ P+ ++ L
Sbjct: 63 EQLASAPESAIADLIRIGGLHEQKAKLIKNISQLVIDEYDGTLD--FVCETDPEVARKEL 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L I+G+G K+ +CV L S PVD +V RI RLG VP + H +M
Sbjct: 121 LTIKGVGPKTADCVLLFSCDRDVIPVDTHVFRITKRLGIVPEKA------DHEKARQILM 174
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
+K+ L H +I FG+ CK ++P C L C +A V +A
Sbjct: 175 EKVPEGLRG-----------STHVALIKFGREICKAQNPRHDQCFLLDLCD-YARQVGTA 222
Query: 1181 RFALPGPSEKGIVTSEFGNGI 1201
R G +E V S G+
Sbjct: 223 RGPECGRTECDSVHSHRDKGL 243
>gi|85114220|ref|XP_964657.1| hypothetical protein NCU02035 [Neurospora crassa OR74A]
gi|10303298|emb|CAC10093.1| conserved hypothetical protein [Neurospora crassa]
gi|28926447|gb|EAA35421.1| predicted protein [Neurospora crassa OR74A]
Length = 572
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 25/155 (16%)
Query: 970 SDNTVQQDWDLLRRIYSTGEE---RSHDK-MDSVDWEAVRCADESEIADAIKERGQQNII 1025
S NT+ D R I + +E R H + S++WE V E ++A AIK G N
Sbjct: 348 SGNTLMAMAD--RAIRNVAQEYGLREHGSGIGSINWEKVASEPEEKLAQAIKVSGNGNQK 405
Query: 1026 AGRIKEFLN-------------------RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A IK L+ R V +++L+ + V D+ L+ G+
Sbjct: 406 AKHIKLILDMVALEMAQMAMENKGTGGKREVAFSETLNLDHMHTVTKDEAMAKLVQYPGI 465
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
G+KS CV L L+ F VD +V R LGWVP
Sbjct: 466 GIKSAACVTLFCLRMPCFAVDTHVHRFCRWLGWVP 500
>gi|15789648|ref|NP_279472.1| endonuclease III [Halobacterium sp. NRC-1]
gi|169235361|ref|YP_001688561.1| DNA-(apurinic or apyrimidinic site) lyase endonuclease III
[Halobacterium salinarum R1]
gi|10580010|gb|AAG18952.1| endonuclease III [Halobacterium sp. NRC-1]
gi|167726427|emb|CAP13212.1| endonuclease III [Halobacterium salinarum R1]
Length = 265
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 24/185 (12%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSID--LEWLRNVPPDKVKEYLLDIEGLGLK 1069
+AD I G N + I +R+ E +G D ++R PD V+ LLD+ G+G K
Sbjct: 98 LADTISMAGLYNQKSATIIRIADRVCEEYGGADGFDAFVREGDPDAVRAALLDMTGVGPK 157
Query: 1070 SVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
+ +CV L + FPVD +V RIA R+G + P D V ++ +
Sbjct: 158 TADCVLLFAGGAPGVFPVDTHVHRIARRMG---IAPAAAD-------HEAVRAALEAAVP 207
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFAL 1184
C H MI FG+ +C R P C ACPL C A+
Sbjct: 208 DAACGFG-------HTAMIQFGREYCTARDPACLDDPAACPLAEHCDRVGVDAATGAVVD 260
Query: 1185 PGPSE 1189
P ++
Sbjct: 261 PADAD 265
>gi|385810254|ref|YP_005846650.1| endonuclease III [Ignavibacterium album JCM 16511]
gi|383802302|gb|AFH49382.1| Putative endonuclease III [Ignavibacterium album JCM 16511]
Length = 236
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V S+I IK G A IK L L + HG + L L+ D+V + L
Sbjct: 60 WEDVLSLKTSQIERIIKVAGLGKQKAKAIKNLLKNLKKYHGKLSLTHLKKKSDDEVLDEL 119
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ +G+G+K+ CV L + PVD +V RI R+G V
Sbjct: 120 ILHKGIGVKTASCVLLFAFDRNVCPVDTHVHRILNRVGVVETS-----------NPEKTF 168
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++I+ ++ + + H ++ G+ +C +P C CP+ C +
Sbjct: 169 NEIK-------SHIPKGAAHSFHTNLLRLGREYCTPTNPKCYECPIENVCNY 213
>gi|374633877|ref|ZP_09706242.1| putative endoIII-related endonuclease [Metallosphaera yellowstonensis
MK1]
gi|373523665|gb|EHP68585.1| putative endoIII-related endonuclease [Metallosphaera yellowstonensis
MK1]
Length = 229
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A EIA AI+ G N A I+E +++++ LE + N PDK +E L+ + G+
Sbjct: 67 ASIEEIAKAIRPAGLHNNKAKNIRE-ISKIIHESFHDLLEDILNQSPDKAREILVSMPGI 125
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + V L+ + FPVD ++ RI+ RLG + G + Y + +
Sbjct: 126 GTKTADVVLLICKGYRTFPVDTHIFRISRRLG------IEG-------RNYSEISSV--- 169
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASAR 1181
W R K H +IT G+ CK P C C L C+++ + S R
Sbjct: 170 -WVR----HVKDPLNAHLLLITHGRKTCKAVKPKCQECVLIDCCQYYLGVLRSER 219
>gi|118577076|ref|YP_876819.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
gi|118195597|gb|ABK78515.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
Length = 277
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ ID ++ VP D E L+ + G+G K+ CV + + + A PVD++V RI+
Sbjct: 92 RIMEVARIIDTKYGGRVPDDL--ETLVGLPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + L K+ P ++ ++ + +G+ C
Sbjct: 150 NRLGLVDTR-TPEETEAALTKKVP-----------------KRHWLHVNDIFVMYGQNIC 191
Query: 1155 KKRSPNCGACPLRGECKHFASAVA 1178
K SP C C +R CK++A++ +
Sbjct: 192 KPVSPMCEVCGIRSLCKYYANSAS 215
>gi|94986389|ref|YP_605753.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94556670|gb|ABF46584.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
Length = 242
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Query: 980 LLRRIYSTGEERSHDKMDSV-DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE 1038
L +R EE ++ + + DW+A+ A +A AI+ A RI+ L + +
Sbjct: 51 LSQRTTQQDEELAYQALRQLGDWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATLRAIRD 110
Query: 1039 LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
GS DL++L +P ++L + G+G+K+ V L + FPVD +V R+ R+G
Sbjct: 111 ERGSYDLDFLAELPVKDALKWLTALPGVGIKTASLVLLFNYARPVFPVDTHVHRVTTRVG 170
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
+ G+ H + L+ELH ++ G+ C
Sbjct: 171 VIGRM---GEQAAHRALLQLLPPD-------------PPFLFELHLNLLRHGQKVCTWVR 214
Query: 1159 PNCGACPLRGECKHFA 1174
P C C LR C A
Sbjct: 215 PKCPVCVLRARCDAHA 230
>gi|389622827|ref|XP_003709067.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
gi|351648596|gb|EHA56455.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
Length = 382
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+W AV ++ +AI+ G + + I L + +GS L+ LR ++
Sbjct: 202 NWPAVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYGSYSLDHLREASDEEAMRE 261
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+L +G+G K+ CV L L +F VD +V R+ LGW P + H+HL P
Sbjct: 262 MLAFKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRPAGTSREEAHLHLDARIPD 321
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGK--IFCKKRSPNCGACPLR 1167
DK Y LH +IT GK CK + G C LR
Sbjct: 322 EDK-----------------YGLHVLLITHGKRCAECKAGGKSSGKCELR 354
>gi|433424488|ref|ZP_20406484.1| endonuclease III [Haloferax sp. BAB2207]
gi|432198075|gb|ELK54399.1| endonuclease III [Haloferax sp. BAB2207]
Length = 268
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS-IDLE-WLRNVPPDKVKEY 1059
E++ AD I +AI+ G N + I+ ++ GS D + ++R P V++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L + P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALEHDIP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
D+K + H MI FG+ FC R P C ACP+ C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVCDMVG 252
Query: 1175 SAVASARFALPGPSE 1189
A+ P ++
Sbjct: 253 VDAAAQSVTDPAAAD 267
>gi|337287836|ref|YP_004627308.1| HhH-GPD family protein [Thermodesulfobacterium sp. OPB45]
gi|334901574|gb|AEH22380.1| HhH-GPD family protein [Thermodesulfobacterium geofontis OPF15]
Length = 218
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
++ IK G N A R+K F+ L+E + DL L + K +E LL+I+GLG ++V
Sbjct: 74 LSQIIKPSGFYNTKAKRLKNFVKFLIENYQG-DLNILFSKGLKKAREELLNIKGLGKETV 132
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
+ + L + F VD RI R VP + Y M + M P+
Sbjct: 133 DSILLYAGNLPIFVVDAYTYRILHRHSLVPEE-----------ATYEEMQALFMENLPQ- 180
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
D + E H ++ GK FCKK+ P C CPL+
Sbjct: 181 ---DPQLFNEFHALLVACGKNFCKKKEPLCETCPLK 213
>gi|440476191|gb|ELQ44813.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
Y34]
gi|440486908|gb|ELQ66733.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
P131]
Length = 375
Score = 62.4 bits (150), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
+W AV ++ +AI+ G + + I L + +GS L+ LR ++
Sbjct: 195 NWPAVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYGSYSLDHLREASDEEAMRE 254
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+L +G+G K+ CV L L +F VD +V R+ LGW P + H+HL P
Sbjct: 255 MLAFKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRPAGTSREEAHLHLDARIPD 314
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGK--IFCKKRSPNCGACPLR 1167
DK Y LH +IT GK CK + G C LR
Sbjct: 315 EDK-----------------YGLHVLLITHGKRCAECKAGGKSSGKCELR 347
>gi|448542485|ref|ZP_21624719.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|448549955|ref|ZP_21628560.1| endonuclease III [Haloferax sp. ATCC BAA-645]
gi|445707085|gb|ELZ58948.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|445713003|gb|ELZ64784.1| endonuclease III [Haloferax sp. ATCC BAA-645]
Length = 270
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLE-WLRNVPPDKV 1056
E++ AD I +AI+ G N +I G +E L + D + ++R P V
Sbjct: 90 ESLAAADREGIIEAIRSGGLYNQKSKLIQGVAEEVL---ADFGSEADFDRYVREEAPATV 146
Query: 1057 KEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L +
Sbjct: 147 RDRLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALER 206
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
+ P D+K + H MI FG+ FC R P C ACPL C
Sbjct: 207 DIP----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPLYDLC 248
>gi|407465823|ref|YP_006776705.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosopumilus
sp. AR2]
gi|407049011|gb|AFS83763.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosopumilus
sp. AR2]
Length = 216
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ ID ++ VP + E L+++ G+G K+ CV + + + A PVD++V RI+
Sbjct: 92 RIIEVAKIIDKKYKGKVPDNL--ETLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + E +M KIQ W +++ + +G+ C
Sbjct: 150 NRLGLVDTKN-PEE------TEQELMKKIQKKYW-----------IDINDTFVMYGQNIC 191
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS 1179
K SP C C ++ CK + S AS
Sbjct: 192 KPISPMCNVCKIKKSCKFYKSKNAS 216
>gi|88602750|ref|YP_502928.1| HhH-GPD [Methanospirillum hungatei JF-1]
gi|88188212|gb|ABD41209.1| DNA-3-methyladenine glycosylase III [Methanospirillum hungatei JF-1]
Length = 226
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D +D + + A + IA I+ N A +I FL+ +E D+ + ++P D+V
Sbjct: 60 DLMDADILYQAGQDTIAPLIRSSRYYNQKARKIMTFLSWFLETCDG-DVSRMASLPTDQV 118
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E LL++ G G ++V+ + L +L+ F VD RI R GW ++
Sbjct: 119 REELLNLSGFGPETVDSILLYALEKPVFVVDAYTRRIGSRQGW--------------FED 164
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
D++Q + RL D + H Q++ G CKK +P C CP+R
Sbjct: 165 DASYDQMQEFFMNRLS-PDVPLYNDYHAQIVYLGNKLCKK-TPLCSICPVR 213
>gi|115375240|ref|ZP_01462505.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|310820220|ref|YP_003952578.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115367707|gb|EAU66677.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|309393292|gb|ADO70751.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 237
Score = 62.0 bits (149), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG-SIDLEWLRNVPPDKVK 1057
V WEAVR A +E+ +AI A R++ L + G + L++L +P + +
Sbjct: 67 VTWEAVRDAPCAEVQEAIAPVTWPEQKAPRLQHILREITARRGGDMALDFLGALPVPQAR 126
Query: 1058 EYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+L + G+G K+ V L S L+ A PVD + R+AVRLG + + G H L
Sbjct: 127 AWLESLPGVGPKTSAAVLLFSRLRRPALPVDSHHYRVAVRLGLLSARIPVGPSHALLAAL 186
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
P W + +Y+ H ++ G+ C +SP CG CP+ C H
Sbjct: 187 LPQE-------W------GAQQVYDHHEVLMLHGQRCCYHQSPACGRCPVLELCPH 229
>gi|335437951|ref|ZP_08560708.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
gi|334893555|gb|EGM31766.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
Length = 281
Score = 62.0 bits (149), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 967 KKNSDNTVQQDWDLLRRIYST--GEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNI 1024
+ +D Q D L Y + GE+ + ++ +A+ A+++E+A+ I G N
Sbjct: 65 QNTTDTASQPAHDALLERYGSLDGEDADAAESETDLVDALADAEQAELAETISGAGLYNQ 124
Query: 1025 IAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQH 1081
+ RI + R+ E +G D ++R P + V+E LL + G+G K+ +CV L + +
Sbjct: 125 KSARISQIAERVREKYGGEDEFDAFVREEPAEAVRETLLAMTGVGPKTADCVLLFAGGRD 184
Query: 1082 IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYE 1141
FPVD +V RI RLG P P + + E V +K C
Sbjct: 185 GVFPVDTHVHRIYRRLGVAP--PDADHEAVRAVLEETVPEK--------KCGFG------ 228
Query: 1142 LHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
H I FG+ +C R P C ACPL C
Sbjct: 229 -HTATIQFGREYCSARKPACLDGPEACPLDDLC 260
>gi|159900799|ref|YP_001547046.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893838|gb|ABX06918.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
Length = 224
Score = 62.0 bits (149), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 989 EERSHDKMDSV--DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLE 1046
EER + + + WEA+ A +A+AIK A I+ L +++ G I ++
Sbjct: 48 EERGYQNLRATFPTWEAILAAPVEAVAEAIKPANYAPAKANNIQAALAKILAERGEISID 107
Query: 1047 WLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLP 1106
+L + + +L + G+G K+ V L PVD +V R++ RLG V + P
Sbjct: 108 FLAELSTEAAMAWLTGLRGVGPKTASLVLLFCFSKPILPVDTHVHRVSQRLGLVKAKT-P 166
Query: 1107 GDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
+ H LW L + D + L+ H ++ G+ C + P C CPL
Sbjct: 167 TEAH--------------EILWQLLPH-DAEWLFNYHVALLRHGQRICLAKRPRCNQCPL 211
Query: 1167 RGEC 1170
+C
Sbjct: 212 TAQC 215
>gi|85375167|ref|YP_459229.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
gi|84788250|gb|ABC64432.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 61.6 bits (148), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAV A E+ ++ + ++ A R+K+ LN ++ G++DL L N+ + E+L
Sbjct: 58 WEAVAAAPVEELEVRLQRQTFPSVAAQRLKDCLNAIIAERGAVDLRHLSNLAIEDAMEWL 117
Query: 1061 LDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+ G+ K+ V SL + A VD + RI R+G VP + + Y
Sbjct: 118 ERLPGVARKNSAGVMNASLFERKAMVVDGHHRRIMQRMGMVPPKA-------DTARTYDA 170
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
+ I W + E H + G+ C+ R+P+C CP+R +C+ A A+
Sbjct: 171 LMPIVPEEW------SAADMDEHHLLLKKLGQTHCRPRAPHCEGCPVRADCRTGTGARAA 224
>gi|433638876|ref|YP_007284636.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
gi|433290680|gb|AGB16503.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
Length = 296
Score = 61.6 bits (148), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIE 1064
AD EIA+ I G N + I+E + G+ ++R P V++ LL +
Sbjct: 124 ADREEIAETISAAGLYNQKSRMIQEAAEWVRTEFGTAPAFDAYVRETAPATVRDELLSVH 183
Query: 1065 GLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ +CV L + Q +PVD +V RI+ RLG P P G + E V
Sbjct: 184 GVGPKTADCVLLFAGGQDGVYPVDTHVHRISRRLGIAP--PEAGHEGVREALETTVPG-- 239
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVAS 1179
P+ + H MI FG+ +C R P C ACPL GEC + +
Sbjct: 240 -----PKCGF--------GHTAMIQFGREYCTARKPACLDGTEACPLAGECDRVGVDIEA 286
Query: 1180 ARFALPGPSE 1189
P ++
Sbjct: 287 QSVVDPAEAD 296
>gi|294496431|ref|YP_003542924.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
gi|292667430|gb|ADE37279.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
Length = 206
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +I IK+ G + AGRIKE L++ E+ VP V+ LL + G+
Sbjct: 63 ADVEKIEILIKDVGFYRVKAGRIKEISQILID-------EYDSQVPASMVE--LLKLPGV 113
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV + A VD +V RI+ RLG V P I L K+ PV
Sbjct: 114 GRKTANCVLSYAFLEKAIAVDTHVHRISNRLGLVD-TVTPDQTEIELQKQVPVS------ 166
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
W E++ + FGK CK SP C C + C
Sbjct: 167 YWR-----------EVNELFVQFGKTVCKPLSPACEVCAIEDLC 199
>gi|408403428|ref|YP_006861411.1| endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364024|gb|AFU57754.1| putative endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 223
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD EI I G NI A RIK+ L+ G VP D + LL + G+
Sbjct: 72 ADIDEIKKIIHSIGFYNIKAERIKQVSQMLISKFGG-------RVPSDI--DSLLKLPGV 122
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV + + A PVDV+V RI+ RLG V + P L K
Sbjct: 123 GRKTANCVLVYAFDKPAIPVDVHVHRISNRLGLVSTKT-PEQTEQDLSK----------- 170
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+D+K +++ + +G+ C PNC AC L+ C+++
Sbjct: 171 ------LVDRKLWTKVNDTFVMYGQNICLPVRPNCKACDLKKMCRYY 211
>gi|395325971|gb|EJF58386.1| DNA glycosylase [Dichomitus squalens LYAD-421 SS1]
Length = 353
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 42/193 (21%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK-- 1057
+++A+ A + ++ +AIK G N A I++ L + + HG L+ L V V
Sbjct: 137 NFQAIAEASKDQVVEAIKTGGLANKKAAVIQKILREVYDRHGEYSLQHLARVVQSDVDVN 196
Query: 1058 ---------------------EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
+ L+ +G+G K+ CV L L +FPVD +V R++
Sbjct: 197 SKAKAEGSSQGRAAVSDEEAMQELVSYDGVGPKTASCVLLFCLGRSSFPVDTHVFRLSRL 256
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGK--IFC 1154
LGWVP + HL + V D ++ Y LH M+ G+ C
Sbjct: 257 LGWVPARADRVTAQAHL--DLKVPDHLK---------------YGLHVLMVGHGRRCKGC 299
Query: 1155 KKRSPNCGACPLR 1167
K S G C L+
Sbjct: 300 KSTSSGKGECVLK 312
>gi|407461561|ref|YP_006772878.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045183|gb|AFS79936.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosopumilus
koreensis AR1]
Length = 215
Score = 61.6 bits (148), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 20/143 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ ID ++ VP D E L+++ G+G K+ CV + + + A PVD++V RI+
Sbjct: 92 RIIEVAKIIDSKYKGKVPEDL--ETLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
R+G V + P + L+K+ +D+K +++ + +G+ C
Sbjct: 150 NRIGLVDTKN-PEETEQELMKK-----------------IDKKFWIDINDTFVMYGQNIC 191
Query: 1155 KKRSPNCGACPLRGECKHFASAV 1177
K SP C C ++ CK + S +
Sbjct: 192 KPISPMCDVCKIKRNCKFYKSKI 214
>gi|448322514|ref|ZP_21511984.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
gi|445601272|gb|ELY55261.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
Length = 270
Score = 60.8 bits (146), Expect = 5e-06, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
E++ A++SE+A+ I G N +I G +E L G D ++R P+ V+
Sbjct: 92 ESLADAEQSELAETISSAGLYNQKSAMIVGAAEEILEEFDSAAGFDD--FVREAEPETVR 149
Query: 1058 EYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
E LL+I G+G K+ +CV L + + FPVD +V RI RLG P + L ++
Sbjct: 150 ERLLEIHGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLERD 209
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
P C H I FG+ +C R P C ACP+ C
Sbjct: 210 IPAAK----------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMADVC 250
>gi|448561313|ref|ZP_21634665.1| endonuclease III [Haloferax prahovense DSM 18310]
gi|445721545|gb|ELZ73213.1| endonuclease III [Haloferax prahovense DSM 18310]
Length = 268
Score = 60.8 bits (146), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS-IDLE-WLRNVPPDKVKEY 1059
E++ AD I +AI+ G N + I+ ++ GS D + ++R P V++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEADFDRYVREEVPATVRDR 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L ++ P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
D+K + H MI FG+ FC R P C ACP+ C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVCDMVG 252
Query: 1175 SAVASARFALPGPSE 1189
A+ P ++
Sbjct: 253 VDAAAQAVTDPAAAD 267
>gi|18419584|gb|AAL69364.1|AF462201_1 unknown [Narcissus pseudonarcissus]
Length = 53
Score = 60.8 bits (146), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1459 TLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRS 1511
++F L IQ FWRGFVCVRGFDR R P+PL RLH P+ K + +KR+
Sbjct: 2 SIFKGLTTEGIQHCFWRGFVCVRGFDRMMRAPKPLFARLH-FPASKGSRNKRT 53
>gi|161527564|ref|YP_001581390.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
gi|160338865|gb|ABX11952.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
Length = 218
Score = 60.8 bits (146), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ ID ++ VP D + L+ + G+G K+ CV + + + A PVD++V RI+
Sbjct: 94 RIIEVAKIIDSKYKGKVPEDL--DTLVQLPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 151
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + L+K+ +D+K +++ + +G+ C
Sbjct: 152 NRLGLVETKN-PEETEQELMKK-----------------VDKKFWIDINDTFVMYGQNIC 193
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS 1179
K SP C C ++ CK + S AS
Sbjct: 194 KPISPMCDVCKIKRSCKFYKSKNAS 218
>gi|392410783|ref|YP_006447390.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
gi|390623919|gb|AFM25126.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
Length = 225
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKV 1056
++D A+ + ++A I+ G NI A R++ F+N LVE H GS+D + +V +
Sbjct: 62 ALDPLAIYHSSHEQLAAWIRPAGYYNIKAVRLRNFINYLVERHSGSLDSLFSDDV--QVL 119
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ LL I+G+G ++ + + L + F +D GR+ R G VP
Sbjct: 120 RTNLLSIKGIGKETADSMILYAAHKPIFVIDAYTGRVMKRHGIVPYS-----------AN 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
Y VM ++ P +D + + H Q + G +CKK P C CPL
Sbjct: 169 YDVMQELFHENLP----VDVELYNDFHAQFVALGHHYCKK-VPLCHFCPL 213
>gi|170751703|ref|YP_001757963.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658225|gb|ACB27280.1| helix-hairpin-helix motif protein [Methylobacterium radiotolerans JCM
2831]
Length = 253
Score = 60.8 bits (146), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DWEAV AD EI AI + A RI++ L L + G +DL +L ++ + + +
Sbjct: 85 DWEAVIDADVPEIEAAIAGVTWPELKAPRIRDVLRALRDRCGGLDLAFLADMEVEAARVW 144
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A RLG + G H L + P
Sbjct: 145 LQAIPGVGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLIGKTVDVGPSHPILRAQLP 204
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
W + LY+ H ++ G+ C R P CG C L C
Sbjct: 205 AD-------W------SAQDLYDNHEILMLHGQKVCHHRRPACGRCVLVDLC 243
>gi|448582052|ref|ZP_21645556.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
gi|445731700|gb|ELZ83283.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
Length = 268
Score = 60.8 bits (146), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 26/196 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS---IDLEWLRNVPPDKVKE 1058
E++ AD I +AI+ G N + I+ ++ GS D ++R P V++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEAGFD-RYVREEDPSTVRD 148
Query: 1059 YLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
LL+++G+G K+ +CV L + + FPVD +V RIA R+G P + L ++
Sbjct: 149 RLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDI 208
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHF 1173
P D+K + H MI FG+ FC R P C ACP+ C
Sbjct: 209 P----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVCDMV 251
Query: 1174 ASAVASARFALPGPSE 1189
A+ P ++
Sbjct: 252 GVDAAAQSVTDPAAAD 267
>gi|403170480|ref|XP_003329823.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168743|gb|EFP85404.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 352
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 1000 DWEAVRCADESEIADAIKER--GQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKV 1056
++ A+R A S I +++ G + I LN + + L+ + LE+LR +P +
Sbjct: 134 NYHAIRRASVSSITAVLQDARVGLAARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEA 193
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
E L +G+G K+ CV L L FPVD +V RI LGW+P P
Sbjct: 194 METLTSFKGVGAKTASCVLLFCLGRNFFPVDTHVFRITKALGWLPPGP 241
>gi|336463475|gb|EGO51715.1| hypothetical protein NEUTE1DRAFT_89368 [Neurospora tetrasperma FGSC
2508]
gi|350297308|gb|EGZ78285.1| DNA glycosylase [Neurospora tetrasperma FGSC 2509]
Length = 381
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN-------------------RLVE 1038
S++WE V E ++A AIK G N A IK L+ R V
Sbjct: 187 SINWEKVASEPEEKLAQAIKVSGNGNQKAKHIKLILDMVALEMAQLAMENNGTGGKREVA 246
Query: 1039 LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
+++L+ + V D+ L+ G+G+KS CV L L+ F VD +V R LG
Sbjct: 247 FPETLNLDHMHTVTKDEAMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRWLG 306
Query: 1099 WVP 1101
WVP
Sbjct: 307 WVP 309
>gi|407925000|gb|EKG18022.1| hypothetical protein MPH_04712 [Macrophomina phaseolina MS6]
Length = 517
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 36/140 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS--------------- 1042
SV+W+AVR AD E+ +AIK G ++ + IK+ L + E + +
Sbjct: 258 SVNWDAVRVADTKEVFEAIKSGGLADVKSKDIKKILQMVYEENQARHDALTKDSATTPAG 317
Query: 1043 --------------------IDLEWLRNVPP-DKVKEYLLDIEGLGLKSVECVRLLSLQH 1081
+ L++L ++ D++ +LL G+G+K+ CV L Q
Sbjct: 318 AENESVGERKLEVARAEANVLSLDYLHSLSSNDEIMAHLLRYPGIGVKTASCVLLFCFQR 377
Query: 1082 IAFPVDVNVGRIAVRLGWVP 1101
+F VD +V R+A L WVP
Sbjct: 378 PSFAVDTHVFRLAKWLNWVP 397
>gi|332796258|ref|YP_004457758.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
gi|332693993|gb|AEE93460.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
Length = 232
Score = 60.5 bits (145), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+IA I+ G I A RIKE L ++++ + DL + + P + +E LL + G+G K+
Sbjct: 78 DIASCIRNIGIYRIKAERIKE-LAKIIKEKYNGDLNKILDKEPKEAREELLSLPGIGEKT 136
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ V L + FPVD ++ RI+ RLG Y + M L+
Sbjct: 137 ADVVLLTCKGYPYFPVDTHIKRISQRLGIAS-------------GSYEQISASLMRLF-- 181
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
D K E H+ +I G+ CK ++P C C L C++++
Sbjct: 182 ----DPKDYLEAHHLLIAHGRNVCKAKNPLCEKCILNDCCEYYS 221
>gi|393766633|ref|ZP_10355188.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
gi|392727951|gb|EIZ85261.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
Length = 253
Score = 60.5 bits (145), Expect = 7e-06, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DWE+V A+ EI AI + A RI+E L + E GS+DL +L ++ + +
Sbjct: 85 DWESVIDAEVPEIQAAIAGVTWPELKAPRIREVLIAVRERCGSLDLAFLGDMDVAAARAW 144
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A RLG + + G H L + P
Sbjct: 145 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLIGPRVDVGPSHAILRAQLP 204
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
W + LY+ H ++ G+ C R P CG C L C SA
Sbjct: 205 AD-------W------SAQALYDNHEILMLHGQQVCHHRRPACGRCVLVDLC---PSAAL 248
Query: 1179 SAR 1181
AR
Sbjct: 249 GAR 251
>gi|448737131|ref|ZP_21719183.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
gi|445804344|gb|EMA54601.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
Length = 267
Score = 60.5 bits (145), Expect = 7e-06, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEG 1065
++S +A+ I+ G N + + R+V+ +GS E++ P V+E LLD G
Sbjct: 96 EQSTLAETIESAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTEEEPATVRETLLDFSG 155
Query: 1066 LGLKSVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L S FPVD +V RI RLG P D+ L + P
Sbjct: 156 VGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADADHEDVREVLEAQVPA----- 210
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASA 1180
+K + H I FG+ +C RSP C ACP+ C+ A+
Sbjct: 211 -----------EKCGFG-HTATIQFGREYCTARSPACLDDPDACPMGDRCEQVGVYPATD 258
Query: 1181 RFALPGPSE 1189
P ++
Sbjct: 259 EVVDPSEAD 267
>gi|282165629|ref|YP_003358014.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282157943|dbj|BAI63031.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 293
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
+ + +D + AD+ E+ + I G A I E +++E G LEW++ V +
Sbjct: 124 RYNGIDVHKMAGADKKELEELIHYSGPYK--AAYIIECSRQIIERWGG-SLEWMKKVSTE 180
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E LL + G+G K+ +CV L SL H PVD ++ R++ RLG L GD
Sbjct: 181 EAREALLSLYGVGPKTADCVLLFSLGHSVTPVDTHICRVSQRLG---LSTSTGDSEAAKR 237
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K ++K + H +I G+ FCK P CP+ C
Sbjct: 238 KVKEDLEK------------KHRIPGMAHLLIINLGRDFCKALVPLHHICPVEDIC 281
>gi|398399341|ref|XP_003853090.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
gi|339472972|gb|EGP88066.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
Length = 484
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 86/226 (38%), Gaps = 50/226 (22%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKER 1019
R T KNS Q L++R G + SVDW+AVR A ++ AI+
Sbjct: 204 RLSANTTNKNSSTAFQ---GLVKRF---GTLKEGVGKGSVDWDAVRTASNHDVFKAIERG 257
Query: 1020 GQQNIIAGRIKEFLN--------RLVELHGS--------------------------IDL 1045
G I + I+ L R L GS I L
Sbjct: 258 GLAKIKSKDIQSILQIAYEENQERKAALTGSAEDPAGAEHAQESEKQDEIEKAEQNVISL 317
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
+ L + D +++ G+GLK+ CV L + H +F VD +V R+ LGWVP
Sbjct: 318 DHLHLLSRDDAIRKMVEFPGIGLKTASCVALFCMGHASFAVDTHVFRLCQYLGWVPKSTK 377
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGK 1151
G+ P +D+ + + D+ Y LH +I GK
Sbjct: 378 KGE---------PKVDRDTTFSHCDVRIPDE-LKYALHQLLIKHGK 413
>gi|448313759|ref|ZP_21503471.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
gi|445597069|gb|ELY51147.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
Length = 286
Score = 60.5 bits (145), Expect = 8e-06, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIE 1064
A+ S +A+ I G N + I ++E GS E++++ P+ V+E LLD+
Sbjct: 97 AERSALAETISSAGLYNQKSEVIIATAEWVIEEFGSAVAFDEYVKDEAPETVRETLLDVR 156
Query: 1065 GLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ +CV L + + FPVD +V RI RLG P D+ L +E P
Sbjct: 157 GVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEDVRAVLEREVPAAK-- 214
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
C H I FG+ +C R P C ACP+ C+
Sbjct: 215 --------CGFG-------HTATIQFGREYCTARKPACLEDPEACPMADRCEQ 252
>gi|332295602|ref|YP_004437525.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
gi|332178705|gb|AEE14394.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
Length = 219
Score = 60.5 bits (145), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLE-WLRNVPPDKVKEYLLDIEGLGLK 1069
+I D+IK G N + + ++ ++E + + + ++ E L I+G+GLK
Sbjct: 71 KIKDSIKIAGLNNQKTKTLHSLGKKFLQNKNYSNIEDYFKKMKISEIVEVFLSIDGIGLK 130
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+V C L L AFPVD ++ RI R+ + D+ I + E + D W
Sbjct: 131 TVSCAILFGLHKPAFPVDTHISRIVQRV--KKKKISKKDIQIEI--EGSIHD------WE 180
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
+ L LH +I G+ C+ + NC CP++ C+ + S
Sbjct: 181 K--------LKALHLYLIELGRNICRAKKQNCQMCPIKELCEDYRS 218
>gi|160902966|ref|YP_001568547.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
gi|160360610|gb|ABX32224.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
Length = 216
Score = 60.5 bits (145), Expect = 9e-06, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D ++ E + E ++A I+ G N+ + R+K FL L + + D++ ++N +
Sbjct: 55 DLLEPEKLSKIKEDDLAQLIRSSGFYNLKSKRLKNFLEWLKKY--NYDIDKIKNKSVTSL 112
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E LL I+G+G ++ + + L + + F +D R+ RLG + L +E
Sbjct: 113 REELLSIKGIGKETADSILLYAFEMPVFVIDAYTKRMFSRLGLI------------LSRE 160
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
Y D+ Q + L D + E H ++ K++CKK +P C C L+ +C
Sbjct: 161 Y---DEFQDFFEKNLTK-DVQLYNEYHALIVKHSKVYCKK-TPKCSDCFLKEKC 209
>gi|85375166|ref|YP_459228.1| endonuclease III [Erythrobacter litoralis HTCC2594]
gi|84788249|gb|ABC64431.1| endonuclease III [Erythrobacter litoralis HTCC2594]
Length = 224
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 33/176 (18%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D+ IA AIK G N+ I++F L+ H R V PD +E LL + G+G
Sbjct: 76 DDEAIAQAIKPCGLYNMKTRNIRKFNQALLAEH--------RGVVPD-TREGLLSLPGIG 126
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K + V + VD +V R+ R+G L + DK L
Sbjct: 127 RKCADIVMSFTFGKDVIAVDTHVHRVCNRIG---------------LTDAKTADKTAEQL 171
Query: 1128 ---WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
PR + D H+ +I FGK C R+P C CP+ C +A A A
Sbjct: 172 EERAPRWAHADG------HFWLIQFGKRVCTSRAPKCERCPVSDLCLWYAEQQAQA 221
>gi|435848105|ref|YP_007310355.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
gi|433674373|gb|AGB38565.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
Length = 270
Score = 60.1 bits (144), Expect = 9e-06, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 1008 DESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDI 1063
++SE+A+ I G N +I G +E L G D ++R P+ V+E LL+I
Sbjct: 98 EQSELAETISSAGLYNQKSEMIIGAAEEILAEFESAAGFDD--FVREAAPEGVRERLLEI 155
Query: 1064 EGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
G+G K+ +CV L + + FPVD +V RI RLG P D+ L +E P
Sbjct: 156 HGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGVAPPDADHEDVRAVLEREVPAAK- 214
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
C H I FG+ +C R P C ACP+ C
Sbjct: 215 ---------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMGDVC 250
>gi|453088940|gb|EMF16980.1| DNA glycosylase [Mycosphaerella populorum SO2202]
Length = 489
Score = 60.1 bits (144), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS--------------- 1042
SVDW AVR A + ++ AI+ G N+ + IK L + E +
Sbjct: 228 SVDWNAVRLAPQQDVFKAIERGGLANVKSKDIKNILQMVYEENQERRAALLTSNDNASES 287
Query: 1043 --------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
I L+ L + + + L+ G+G K+ CV L LQ
Sbjct: 288 QSAPESSTQTEEITKADQDVISLDHLHLMSTNDAIDKLITYPGIGPKTASCVALFCLQRP 347
Query: 1083 AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT---- 1138
+F VD +V R+ LGWVP G P +D+ Y + D K
Sbjct: 348 SFAVDTHVFRLVQYLGWVPKSTKKGQ---------PKVDRNTTY-----SHCDAKIPDEY 393
Query: 1139 LYELHYQMITFGKIFCKKRSPNCGAC 1164
Y+LHY +I GK C P C A
Sbjct: 394 KYKLHYLLIKHGKT-C----PRCRAA 414
>gi|421874622|ref|ZP_16306225.1| endonuclease III [Brevibacillus laterosporus GI-9]
gi|372456478|emb|CCF15774.1| endonuclease III [Brevibacillus laterosporus GI-9]
Length = 190
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ D I++ G A I+ L+E +G VP E L+ + G+G K+
Sbjct: 40 ELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVPNKH--EELVKLPGVGRKT 90
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V RI+ RLG+ P P + L+K+ P D W
Sbjct: 91 ANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMKKIPKKD------WS- 143
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ H++MI FG+ CK +SP C CPL C
Sbjct: 144 ----------DTHHRMIFFGRYHCKAQSPQCDICPLEDVC 173
>gi|147845261|emb|CAN79062.1| hypothetical protein VITISV_036428 [Vitis vinifera]
Length = 449
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%)
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D N+GRI +LG VP QPL L ++LL+ +++ IQ YL RLC LD TLYE YQ+
Sbjct: 343 DTNIGRIXEKLGXVPFQPLLEPLQLYLLELCHMLEFIQKYLLLRLCKLDXXTLYEQCYQL 402
Query: 1147 ITFGKIF 1153
ITFGKI
Sbjct: 403 ITFGKIL 409
>gi|345870606|ref|ZP_08822557.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
gi|343921419|gb|EGV32135.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
Length = 247
Score = 60.1 bits (144), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E++ D +ADA++ G N+ A R+++F + V G L+ L + D++++ LL
Sbjct: 84 ESILSLDVEALADALRPAGYFNLKAQRLRDFCSFYVASGG---LDALSRIETDRLRDQLL 140
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++G+G ++ + + L + F VD R+ RLG L GD ++
Sbjct: 141 AVKGIGPETADDMLLYAFDRPVFVVDAYTRRLFSRLG-----QLSGDEGYEGIRA----- 190
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L P D L E H ++ K C+ R P C C LR +C
Sbjct: 191 AFEAVLGP-----DVAMLKEYHALLVRHAKEACRSRHPRCSTCSLRSDC 234
>gi|20093393|ref|NP_619468.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina acetivorans
C2A]
gi|19918762|gb|AAM07948.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina acetivorans
C2A]
Length = 216
Score = 60.1 bits (144), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 78/192 (40%), Gaps = 40/192 (20%)
Query: 992 SHDKMDSVDWEAVR-------------CADESEIADAIKERGQQNIIAGRIKEFLNRLVE 1038
SH D V + A R AD EI IK+ G + +GRIKE L+E
Sbjct: 47 SHRTRDDVTYPAARKLFERFSTPEEMVGADVEEIEALIKDVGFYRVKSGRIKEISGILLE 106
Query: 1039 LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLG 1098
E+ VP D E LL + G+G K+ CV + A VD +V RI+ RLG
Sbjct: 107 -------EYDGEVPDDM--ETLLKLPGVGRKTANCVLAHAFLKDALAVDTHVHRISNRLG 157
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
V + P + + L K +P QK ++ ++ G+ C+ S
Sbjct: 158 LVETKT-PEETELELKKIFP-----------------QKYWKHINLLLVKLGQNICRPIS 199
Query: 1159 PNCGACPLRGEC 1170
P C C L C
Sbjct: 200 PKCEVCVLNDMC 211
>gi|167044454|gb|ABZ09130.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_APKG6D9]
Length = 216
Score = 59.7 bits (143), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 20/145 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ I+ ++ VP + + L+++ G+G K+ CV + + + A PVD++V RI+
Sbjct: 92 RIIEVAKIINTKYKGKVPDNL--DTLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + L+K+ P +K +++ + +G+ C
Sbjct: 150 NRLGLVDTKN-PEETEQELMKKIP-----------------KKYWIDINDTFVMYGQNIC 191
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS 1179
K SP C C ++ CK++ + AS
Sbjct: 192 KPISPMCDVCKIKKNCKYYKTKYAS 216
>gi|339008005|ref|ZP_08640579.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
gi|338775208|gb|EGP34737.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
Length = 221
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ D I++ G A I+ L+E +G VP E L+ + G+G K+
Sbjct: 71 ELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVPNKH--EELVKLPGVGRKT 121
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V RI+ RLG+ P P + L+K+ P D W
Sbjct: 122 ANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMKKIPKKD------WS- 174
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ H++MI FG+ CK +SP C CPL C
Sbjct: 175 ----------DTHHRMIFFGRYHCKAQSPQCDICPLEDVC 204
>gi|145590366|ref|YP_001152368.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282134|gb|ABP49716.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
Length = 218
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 23/179 (12%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
++ S+ E++R E+ + IK G A +K + + L I E L + D
Sbjct: 59 RLGSITPESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMGAD 116
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
++ L+ + G+G K+ + V L +L AFPVD ++ RIA R G +
Sbjct: 117 AARKLLMSLPGVGRKTADVV-LANLGLPAFPVDTHITRIAKRWG--------------VG 161
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
Y + + M P+ YL E H ++I FG+ C+ R+P C CP+ C F
Sbjct: 162 SRYEDISRWFMEQLPKERYL------EFHLKLIQFGRDICRARNPRCEECPIGERCPSF 214
>gi|336264806|ref|XP_003347179.1| hypothetical protein SMAC_05479 [Sordaria macrospora k-hell]
gi|380093873|emb|CCC08838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 560
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL--------------------- 1036
S++WE V + ++A AIK G N A IK L+ +
Sbjct: 371 SINWEKVATEPQEKLAQAIKVSGNGNQKAKNIKLILDMVALEMAQMAREKSVNNGGGEQE 430
Query: 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
V +++L+ + + D+ L+ G+G+KS CV L L+ F VD +V R
Sbjct: 431 VAFPETLNLDHMHTLTKDEAMTKLVRYPGIGIKSAACVTLFCLRKPCFGVDTHVHRFCRW 490
Query: 1097 LGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
LGWVP + P D H + P K +++
Sbjct: 491 LGWVPEKANPEDCFRHCDVKVPDHLKYRLH 520
>gi|337286496|ref|YP_004625969.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
gi|335359324|gb|AEH45005.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
Length = 217
Score = 59.7 bits (143), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+A I+ G + A R+K F++ LVE HG +LE L ++ +K +E LL ++G+G ++
Sbjct: 74 LAKLIRPAGYFRVKAKRLKNFVHLLVEEYHG--ELEALFSLGLEKAREKLLLVKGIGPET 131
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L + F +D RI +R G DL +K P
Sbjct: 132 ADSMLLYAGNLPIFVIDAYTRRILLRHGLAHEDMSYEDLQSLFMKNLPK----------- 180
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
D K E H ++ GK FC+ + P C CPL+G
Sbjct: 181 ----DVKLFNEYHALLVACGKNFCRPKKPLCEECPLKG 214
>gi|425773936|gb|EKV12261.1| Base excision DNA repair protein [Penicillium digitatum PHI26]
gi|425782386|gb|EKV20298.1| Base excision DNA repair protein [Penicillium digitatum Pd1]
Length = 307
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ E+++ + + G A I L ++ H + L L + ++V E
Sbjct: 142 TDYNAISKGGETKLQNVLSCGGLHIRKAKFIMSILRQVKARHDAYTLNHLWPLDDEQVME 201
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L G+G K+ CV L+L F VD ++ RI LGW PL P HL + P
Sbjct: 202 EFLSYNGVGPKTASCVLALTLNRQRFVVDTHIYRITGFLGWRPLHATPEQARAHLETKIP 261
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGACPLRGECKHFA 1174
D+ + Y LH IT G+ CK G+C LR + A
Sbjct: 262 --DEFK---------------YSLHLLFITHGRECPECKAGGKLKGSCDLRKALRELA 302
>gi|448590303|ref|ZP_21650179.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
gi|445734936|gb|ELZ86491.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
Length = 267
Score = 59.7 bits (143), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS-IDLE-WLRNVPPDKVKEY 1059
E++ AD + +AI+ G N + I ++ GS D + ++R P+ V+E
Sbjct: 89 ESLAAADREALVEAIRSAGLYNQKSKLIIGVAEAVLADFGSEADFDTYIREADPETVRER 148
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL+++G+G K+ +CV L + + FPVD +V RI+ R+G P + L ++ P
Sbjct: 149 LLEMKGVGPKTADCVLLFAGGRDGVFPVDTHVHRISRRIGLAPADADHEGVRERLERDVP 208
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
C H MI FG+ +C R P C ACP+ C
Sbjct: 209 ----------GEACGFG-------HTAMIQFGREYCTARKPACLDGPEACPMADVCDMVG 251
Query: 1175 SAVASARFALPGPSE 1189
V++ P ++
Sbjct: 252 VDVSTGAVTDPASAD 266
>gi|254424749|ref|ZP_05038467.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
gi|196192238|gb|EDX87202.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
Length = 254
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW+ VR A + AI A RI++ L ++ + G++ +++L ++P + + +
Sbjct: 83 DWKLVRDAKTEAVQAAIAPCTWPEQKAPRIQQILQQITKERGTLSIDFLADIPVAEARAW 142
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G K+ V S L+ A PVD + R+AVR +P + G H L + P
Sbjct: 143 LETLTGVGPKTSAAVLAFSTLRRRALPVDSHHHRVAVRTELIPKKVTVGPSHAILEAQLP 202
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
Q +Y+ H ++ G+ C R+P C C + C
Sbjct: 203 EDWSAQQ-------------VYDNHEVLMLHGQHCCHYRNPTCDRCVILDLC 241
>gi|374622424|ref|ZP_09694949.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
gi|373941550|gb|EHQ52095.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
Length = 221
Score = 59.7 bits (143), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D E++ +++A I+ G N+ AGR++ F + +E G L R + ++
Sbjct: 59 LDAESLAALPRNDLAGLIRPSGYFNVKAGRLQAFCHWYLEQGGETAL---RGWSTEALRR 115
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL----GWVPLQPLPGDLHIHLL 1114
LL ++G+G ++ + + L + + F VD R+ RL G P L + L
Sbjct: 116 GLLSVKGVGPETADDILLYAFERPVFVVDAYTRRLFARLELAGGDEPYDVLRTGVEAVLG 175
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ PV++ E H ++ GK FC+ R P+C CPLR C+
Sbjct: 176 ADVPVLN-------------------EFHALIVAHGKTFCRPR-PSCEGCPLRAMCQ--- 212
Query: 1175 SAVASARF 1182
AS RF
Sbjct: 213 ---ASLRF 217
>gi|352682089|ref|YP_004892613.1| DNA endonuclease III [Thermoproteus tenax Kra 1]
gi|350274888|emb|CCC81534.1| DNA endonuclease III [Thermoproteus tenax Kra 1]
Length = 224
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 31/179 (17%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI---DLEWLRNV 1051
++ ++ +++ E E++ I+ G GR + +L+EL S+ LE + +
Sbjct: 63 RLGIIEPQSILSLSEEELSQLIRPAGMHR---GRAR----KLIELSRSLLGHPLEEISRM 115
Query: 1052 PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
++ +++L+D+ G+G K+ + V LL++ AFPVD ++ RIA R W
Sbjct: 116 SFEEARKFLMDLPGVGEKTAD-VLLLNMGKPAFPVDTHIKRIAAR--W------------ 160
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ K Y + + W R + + L E+H ++I FG+ +C+ + P C CP+R C
Sbjct: 161 SIGKSYREISE-----WFRKNFPPTRYL-EIHLKLIQFGRDYCRAQRPRCDVCPVRHMC 213
>gi|410721172|ref|ZP_11360516.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
gi|410599623|gb|EKQ54169.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
Length = 213
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
AD + + I+ G ++ A RI E +L E G + PD +K LL++ G
Sbjct: 66 ADPALLEPLIRPAGFYHVKAQRIVEVSRKLQDEFKGQV---------PDYMKG-LLELPG 115
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ CV + Q A PVDV+V RI+ RLG V + P + L K
Sbjct: 116 VGRKTANCVLVYGFQKPAIPVDVHVHRISNRLGLVDTKH-PEETEAELEK---------- 164
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
L PR ++ EL+ M+ FG+ C+ +SP CPL+ C ++
Sbjct: 165 -LVPREYWI------ELNDLMVQFGQTICRPQSPRHEECPLQELCDYY 205
>gi|297585115|ref|YP_003700895.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
gi|297143572|gb|ADI00330.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
Length = 211
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E +R + E+ + I+ G + A R++ FL E HG D+ L+ V D ++E LL
Sbjct: 58 ERIRAMTDEELEERIRPSGFFRMKAQRLRAFLE-WFESHGD-DVRALQQVETDVLREELL 115
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++G+G ++ + + L +L F +D RI R+G+ K+Y
Sbjct: 116 QVKGIGAETADSILLYALYRPVFVIDAYTHRIMNRIGY------------QFPKKYNQAQ 163
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P+ D+ + H Q + K CKK+ P C CPL EC+
Sbjct: 164 AFFEEALPK----DEALYNDFHAQFVRHAKEHCKKK-PVCEGCPLEPECE 208
>gi|15897075|ref|NP_341680.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus P2]
gi|284173420|ref|ZP_06387389.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus 98/2]
gi|384433576|ref|YP_005642934.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
gi|1707778|emb|CAA69576.1| endonuclease III [Sulfolobus solfataricus P2]
gi|13813246|gb|AAK40470.1| DNA endonuclease III, probable (ntH-1) [Sulfolobus solfataricus P2]
gi|261601730|gb|ACX91333.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
Length = 236
Score = 59.3 bits (142), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + A+ ++I A+K G A R+KE ++E + + ++ L N ++ LL
Sbjct: 69 EKLSNANLADIESALKISGLYRTKAKRLKEISRIILERYNGL-IDSLLNT--SNARDELL 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIA---FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+EG+G K+ + V L + FPVD ++ R++ RLG VP + L + +
Sbjct: 126 KLEGIGEKTADVVLLTCYGYYGYKVFPVDTHITRVSKRLGIVPTNAKYSLISSTLKELFS 185
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
D L LH+ +I G+ CK R P C +C ++ C++++
Sbjct: 186 AYD-----------------LLHLHHMLIAHGRQTCKARKPLCNSCIIKECCEYYS 224
>gi|170741581|ref|YP_001770236.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. 4-46]
gi|168195855|gb|ACA17802.1| helix-hairpin-helix motif [Methylobacterium sp. 4-46]
Length = 239
Score = 59.3 bits (142), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A +E+ I A R++ L + E HGS+ L++LR++ + +
Sbjct: 63 DWAELIAAPVAEVEAVITGVTWPEQKAPRLQAVLRAVRERHGSLSLDFLRDLDVASARAW 122
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A RLG + + G H L + P
Sbjct: 123 LEAIPGIGPKTSAAVLSFSTLRRPALPVDSHHHRVAQRLGLIGPKVDVGPAHAILRAQLP 182
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
W + LY+ H M+ G+ C R+P CG C L C
Sbjct: 183 EA-------W------SAQDLYDNHEVMMLHGQRCCFHRAPACGTCVLLDLC 221
>gi|451996449|gb|EMD88916.1| hypothetical protein COCHEDRAFT_1226992 [Cochliobolus heterostrophus
C5]
Length = 525
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 75/191 (39%), Gaps = 41/191 (21%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN--------RLVELHGS------- 1042
SVDW VR AD+ EI +AIK G ++ + IK+ L R EL S
Sbjct: 243 SVDWNKVRQADQKEIFEAIKSGGLADVKSKDIKKILQMVWEENQARRKELQSSSHKAPGS 302
Query: 1043 -------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
+ L+ L + + L G+G K+ CV L LQ +
Sbjct: 303 ANEAEEEKNTEIEKANQDVVSLDHLHLLSSEDAFNALTKYPGIGPKTASCVLLFCLQRPS 362
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGD---LHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY 1140
F VD +V R+ LGWV P PGD L + + Y + D Y
Sbjct: 363 FAVDTHVFRLCKWLGWV---PPPGDSRGLAPGAKGTFAGPTRNSTYAHCEVRIPDH-LKY 418
Query: 1141 ELHYQMITFGK 1151
+LHY +I GK
Sbjct: 419 QLHYLLIKHGK 429
>gi|408381370|ref|ZP_11178919.1| endonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815837|gb|EKF86400.1| endonuclease III [Methanobacterium formicicum DSM 3637]
Length = 213
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD + + I+ G ++ A RI E +L L+ + PD +K LL++ G+
Sbjct: 66 ADPTLLEPLIRPAGFYHVKAQRIVEVSRKL--------LDKFKGQVPDDMKN-LLELPGV 116
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV + Q A PVDV+V RI+ RLG V + P + L K
Sbjct: 117 GRKTANCVLVYGFQIPAIPVDVHVHRISNRLGLVNTKT-PEETEAELEK----------- 164
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ PR ++ EL+ M+ FG+ C+ +SP CPL+ C ++
Sbjct: 165 IVPREYWI------ELNDLMVQFGQTICRPQSPRHEECPLQELCDYY 205
>gi|407477461|ref|YP_006791338.1| endonuclease III [Exiguobacterium antarcticum B7]
gi|407061540|gb|AFS70730.1| Endonuclease III [Exiguobacterium antarcticum B7]
Length = 222
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + A +I + IK G A IK RLV LH VP D+ L
Sbjct: 63 ERLAAAPVEQIEEKIKRLGLYRNKAKNIKALAERLVTLHDG-------EVPTDRAG--LE 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V ++ AF VD +V R++ RLG + + + L++ +
Sbjct: 114 ALPGVGRKTANVVLSVAFDVPAFAVDTHVERVSKRLGICRWKDNVTQVEVTLMRRF---- 169
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ +LH+Q I FG+ CK + PNC CPL C+
Sbjct: 170 -------------KRERWSKLHHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|303324187|ref|XP_003072081.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111791|gb|EER29936.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320037075|gb|EFW19013.1| helix-hairpin-helix domain-containing protein [Coccidioides posadasii
str. Silveira]
Length = 444
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SV+W VR A EI DAIK G + + IKE L + E
Sbjct: 238 SVNWNKVREATVQEIRDAIKSGGLADTKSKHIKEILTMVYEQNIARRKDLVDAKQGGDET 297
Query: 1039 LHGS----IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+H S + L+ + + D+ + + G+G+K+ CV L L+ F VD +V R+
Sbjct: 298 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 357
Query: 1095 VRLGWVP 1101
LGWVP
Sbjct: 358 KWLGWVP 364
>gi|374385131|ref|ZP_09642640.1| endonuclease III [Odoribacter laneus YIT 12061]
gi|373226557|gb|EHP48881.1| endonuclease III [Odoribacter laneus YIT 12061]
Length = 211
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSI--DLEWLRNVPPDKVKE 1058
EA+ A+ EI + IK N A + +LV + G + D+E L+ +P
Sbjct: 63 EAMAKAEVGEIYELIKSISYPNNKAKHLSAMAKKLVSDFDGKVPDDMELLQTLP------ 116
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
G+G K+ + ++ A PVD +V R+A R+G V P + L+K P
Sbjct: 117 ------GVGRKTANVIEAVAFHRPAMPVDTHVFRVADRIGLVTNATTPLETEKQLVKNIP 170
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ L H+ +I G+ C R P C +C +R C++F
Sbjct: 171 -----------------SEILSTAHHWLILHGRYTCTARRPKCESCGIRDYCRYF 208
>gi|452988619|gb|EME88374.1| hypothetical protein MYCFIDRAFT_25275 [Pseudocercospora fijiensis
CIRAD86]
Length = 470
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 70/189 (37%), Gaps = 44/189 (23%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SVDW+AVR A E+ AI+ G I + I+E L E
Sbjct: 227 SVDWDAVRRAPNHEVFKAIERGGLAKIKSKDIQEILQMAYEENQERRSALTSPSGDPAGA 286
Query: 1039 ---------------LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
I L+ L + ++ E +L G+G K+ CV L LQ +
Sbjct: 287 EHEPESEKQEEIAKAKQNVISLDHLHLLSTNEAIEKMLSFPGIGPKTASCVALFCLQRPS 346
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
F VD +V R+ LGWVP G+ + Y D + + Y LH
Sbjct: 347 FAVDTHVFRLCQYLGWVPKSVKKGEPKVDRNTTYSHCD----------ARIPDEFKYPLH 396
Query: 1144 YQMITFGKI 1152
+I GK+
Sbjct: 397 QLLIKHGKV 405
>gi|448529547|ref|ZP_21620567.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
gi|445708716|gb|ELZ60554.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
Length = 232
Score = 58.9 bits (141), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+ + I+ G + A RI+ L + E G+ L +L + D K
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDAMATDDAKA 132
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L +I+G+G K+ V VD +V R++ R G VP G H L ++ P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDEQVP 192
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ +Y LH +I G+ C R+P+C
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDC 218
>gi|379005350|ref|YP_005261022.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
gi|375160803|gb|AFA40415.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
Length = 218
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
++ S+ E++R E+ + IK G A +K + + L I E L + D
Sbjct: 59 RLGSITPESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMGAD 116
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
++ L+ + G+G K+ + V L++L AFPVD ++ RIA R G G + +
Sbjct: 117 AARKLLMGLPGVGRKTADVV-LVNLGLPAFPVDTHITRIAKRWG-------VGSRYEDIS 168
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ + M+++Q ++ E H ++I FG+ CK R P C CP+ C F
Sbjct: 169 RWF--MEQLQ-----------KERCLEFHLKLIQFGRDICKARKPRCEECPIGERCPSF 214
>gi|257388060|ref|YP_003177833.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
gi|257170367|gb|ACV48126.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
Length = 236
Score = 58.9 bits (141), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+A+ I+ G + A RI+ L + E G+ L +L +P + K
Sbjct: 74 DFAAIEAADHDELAETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDALPTAEAKA 133
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V VD +V R++ R G VP H L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPEDASNERAHDALDAVVP 193
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
D+ T Y LH +I G+ C R+P+C
Sbjct: 194 ----------------DELT-YPLHVLLIRHGRTHCSARNPDC 219
>gi|7406460|emb|CAB85562.1| putative protein [Arabidopsis thaliana]
Length = 1017
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 19/130 (14%)
Query: 486 LMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQ 545
L Q + A+II + ++L + D + NA+V Y+ GALVP++
Sbjct: 880 LCQDSIAEIIYRMQNLYLGDKERE------------QEQNAMVLYK-----GDGALVPYE 922
Query: 546 IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSF 605
K++K +P+V +D T R+WNL+M D D+ ++ EKWW++ER VF GR SF
Sbjct: 923 --SKKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSF 980
Query: 606 TARMHLILGD 615
ARMHL+ G+
Sbjct: 981 IARMHLVQGE 990
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 6 PRVLVEGMPKKEP-KPKKAPQQPKTPKPVTPNRAHETTRKRKYVRKNSVSGNVVMDESVS 64
P+V+VEG PK++P KP + P+ KP R T K K S + + +
Sbjct: 282 PKVVVEGKPKRKPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNLKESATK 341
Query: 65 KRRKCGRGNRQSNSDAIILLPPPPIKTCRQALNFDLEN 102
K G + +S P +K+CR+ALNFDLEN
Sbjct: 342 KPANVGDMSNKS--------PEVTLKSCRKALNFDLEN 371
>gi|119173285|ref|XP_001239121.1| hypothetical protein CIMG_10143 [Coccidioides immitis RS]
Length = 434
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SV+W VR A EI DAIK G + + IKE L + E
Sbjct: 228 SVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNET 287
Query: 1039 LHGS----IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+H S + L+ + + D+ + + G+G+K+ CV L L+ F VD +V R+
Sbjct: 288 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 347
Query: 1095 VRLGWVP 1101
LGWVP
Sbjct: 348 KWLGWVP 354
>gi|448317595|ref|ZP_21507145.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
gi|445602986|gb|ELY56956.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
Length = 271
Score = 58.9 bits (141), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQN----IIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVK 1057
E++ A+ SE+A+ I G N +I G +E L G D ++R P+ V+
Sbjct: 92 ESLADAERSELAETISSAGLYNQKSEMIIGAAEEILEEFGSAAGFDD--FVREEEPEDVR 149
Query: 1058 EYLLDIEGLGLKSVECVRLL-SLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ LL+I G+G K+ +CV L S + FPVD +V RI RLG P + L +E
Sbjct: 150 QRLLEIHGVGPKTADCVLLFASGRGGVFPVDTHVHRIYRRLGIAPPDADHEVVRAVLERE 209
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
P C H I FG+ +C R P C ACP+ C+
Sbjct: 210 VPAAK----------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMADVCEQ 252
Query: 1173 FASAVASARFALPG 1186
A+ P
Sbjct: 253 VGVYPATGEVVDPA 266
>gi|392869327|gb|EAS27228.2| HhH-GPD family base excision DNA repair protein [Coccidioides immitis
RS]
Length = 444
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SV+W VR A EI DAIK G + + IKE L + E
Sbjct: 238 SVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNET 297
Query: 1039 LHGS----IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+H S + L+ + + D+ + + G+G+K+ CV L L+ F VD +V R+
Sbjct: 298 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 357
Query: 1095 VRLGWVP 1101
LGWVP
Sbjct: 358 KWLGWVP 364
>gi|162447100|ref|YP_001620232.1| endonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985207|gb|ABX80856.1| endonuclease III [Acholeplasma laidlawii PG-8A]
Length = 214
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD ++ D IK G + I RLVE + + VP ++ + L + G+
Sbjct: 67 ADVDDVMDTIKTIGLYKTKSKNIIGLAKRLVEDYDGL-------VPSER--KDLESLPGV 117
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V + A VD ++ RI+ RLG ++ + L K++P
Sbjct: 118 GRKTANVVLSNAFGIPALAVDTHILRISKRLGLADETDDVLEVEMKLNKQFP------KE 171
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
LW ++LH+Q+I FG+ C R PNC C ++ C HF + ++
Sbjct: 172 LW-----------HKLHHQLIFFGRYHCIARKPNCDTCKMQDMCPHFKNVIS 212
>gi|333987518|ref|YP_004520125.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
gi|333825662|gb|AEG18324.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
Length = 212
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 1012 IADA--------IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDI 1063
IADA IK+ G ++ A R+KE I E +V PD +KE LL +
Sbjct: 64 IADAPIENIEILIKKSGFYHVKAKRVKEV--------SKIIHEEYDDVVPDDMKE-LLSL 114
Query: 1064 EGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ CV + A PVDV+V RI+ R+G V + P + L+K P
Sbjct: 115 PGVGRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVDTKT-PEQTEVELMKTVP----- 168
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ Y P L+ ++ FG+ C+ P CP+ C ++
Sbjct: 169 RKYWLP------------LNDLLVQFGQTICRPIGPKHEICPIADLCDYY 206
>gi|448480701|ref|ZP_21604703.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
gi|445822018|gb|EMA71793.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
Length = 233
Score = 58.5 bits (140), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 986 STGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSID 1044
S E D+ D D+ AV AD E+ + I+ G + A RI+ L + E G+
Sbjct: 61 SRAAEALFDRYD--DFAAVESADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYS 118
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
L +L +P D+ K++L +I+G+G K+ V VD +V R++ R G VP
Sbjct: 119 LAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTIAVDTHVERVSKRFGLVPESA 178
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
H L ++ P D+ T Y LH +I G+ C R +C
Sbjct: 179 SNERAHEALDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADC 218
>gi|389861151|ref|YP_006363391.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
gi|388526055|gb|AFK51253.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
Length = 227
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E V D E+A IK G A RI E + L + + E +R + + +E L+
Sbjct: 67 EKVLSLDVGELAQLIKPAGLHLQRARRIVELASYLRDRLEEFESE-VRRMDVLEAREVLM 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++ G+G K+ + V L+ AFPVD ++ RI RLG+V G +
Sbjct: 126 NLPGVGDKTADVVLLVYFGKPAFPVDTHIKRITTRLGFV-----KGGSY----------K 170
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
K+ + W C K L E H +I G+ CK R P C CP++ C+++ S
Sbjct: 171 KVSGF-WQS-CLPPDKYL-ETHLLLIQHGRAICKARKPLCHECPIKEFCEYYKS 221
>gi|340345847|ref|ZP_08668979.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520988|gb|EGP94711.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 217
Score = 58.5 bits (140), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 20/139 (14%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ ID ++ + PD + E L+ + G+G K+ CV + + A PVD++V RI+
Sbjct: 94 RIIEVSKIIDSKY-SGIVPDTLDE-LIQLPGVGRKTANCVLVYAFDKPAIPVDIHVHRIS 151
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + + L+K+ P +K +++ + +G+ C
Sbjct: 152 NRLGLVNTKS-PEETELVLMKKIP-----------------KKYWIKINDTFVMYGQNIC 193
Query: 1155 KKRSPNCGACPLRGECKHF 1173
K +P C C ++ CK++
Sbjct: 194 KPINPMCNVCKIKKNCKYY 212
>gi|448510854|ref|ZP_21616067.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|448523661|ref|ZP_21618848.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
gi|445695608|gb|ELZ47710.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|445700734|gb|ELZ52725.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
Length = 233
Score = 58.5 bits (140), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 986 STGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSID 1044
S E D+ D D+ AV AD E+ + I+ G + A RI+ L + E G+
Sbjct: 61 SRAAEALFDRYD--DFAAVESADHEELKETIRVAGLTDQKAARIQRALTAIREETGGAYS 118
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
L +L +P D+ K++L +I+G+G K+ V VD +V R++ R G VP
Sbjct: 119 LAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESA 178
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
H L ++ P D+ T Y LH +I G+ C R +C
Sbjct: 179 SNERAHEALDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADC 218
>gi|389844120|ref|YP_006346200.1| endonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858866|gb|AFK06957.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase [Mesotoga
prima MesG1.Ag.4.2]
Length = 220
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A ++ D IK G A RI +VE V PD ++E L+ I G+
Sbjct: 66 AKPEDLYDLIKASGMYRQKAARIINCARMIVESFA--------GVVPDTLEE-LVTIPGV 116
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V +S + A VD +V RIA RLGWV + P D L+K P
Sbjct: 117 GRKTANIVLNVSFKKEALAVDTHVHRIANRLGWVKTK-TPDDTEFALMKILP------PS 169
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+W ++ M+ FG+ C+ P C C + C++F+
Sbjct: 170 IWG-----------PVNGSMVEFGREICRPIGPKCNLCGISQCCEYFS 206
>gi|239618511|ref|YP_002941833.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
gi|239507342|gb|ACR80829.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
Length = 210
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 40/213 (18%)
Query: 974 VQQDWDLLRRIYST---------GEERSHDKMDSV--DWEAVRCADESEIADAIKERGQQ 1022
+ QD D R + ST E + K+ SV D A+ A ++ + IK G
Sbjct: 20 IHQDSDPYRVLVSTVLSQRTRDENTEVASKKLFSVYPDVFAIAKAKPEDLYNLIKAAGMY 79
Query: 1023 NIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH 1081
A RI E +VE + G + PD ++E L + G+G K+ V +S
Sbjct: 80 RQKAERIVEISKIIVETYNGKV---------PDTLEE-LTKLPGVGRKTANIVLNVSFGK 129
Query: 1082 IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYE 1141
A VD +V RI+ RLGW+ + P L K P LW
Sbjct: 130 AALAVDTHVHRISNRLGWIKTKQ-PEQSEFELQKILP------EELWG-----------P 171
Query: 1142 LHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
L+ M+ FG+ CK +P C CP+ C++F+
Sbjct: 172 LNGSMVEFGRRVCKPVNPQCNECPINSCCRYFS 204
>gi|163852137|ref|YP_001640180.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
gi|163663742|gb|ABY31109.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
Length = 254
Score = 58.5 bits (140), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A EI I + A RIK L + E G++ L++L ++ D+ + +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A R G + + G H L + P
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGAKVDVGPSHAVLRAQLP 205
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D W + LY+ H ++ G+ C RSP CG C L C
Sbjct: 206 --DD-----W------SAQKLYDNHEVLMLHGQRVCFHRSPTCGRCVLLDIC 244
>gi|256830633|ref|YP_003159361.1| HhH-GPD family protein [Desulfomicrobium baculatum DSM 4028]
gi|256579809|gb|ACU90945.1| HhH-GPD family protein [Desulfomicrobium baculatum DSM 4028]
Length = 232
Score = 58.5 bits (140), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 1005 RCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEW--LRNVPPDKVKEYLLD 1062
R DE E+A I+ G + A R++ FL + LH + DL+ LR + ++ LL+
Sbjct: 67 RLTDE-ELATFIRPAGAFRVKAARVRNFL---LFLHRTCDLDMDGLRGETVETLRPALLE 122
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G ++ + + L +L +F VD RI R G VP G+L + P
Sbjct: 123 VSGIGPETADSILLYALGLPSFVVDAYTRRILNRHGLVPEDIAYGELREFFMDVLPP--- 179
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARF 1182
D E H ++ GK +C KR C CPL + F+ + +
Sbjct: 180 ------------DPALYNEYHALIVRTGKNWCAKRQGKCPDCPLAVFLEEFSPLTCTGKS 227
Query: 1183 ALPGP 1187
+P P
Sbjct: 228 IIPHP 232
>gi|451850889|gb|EMD64190.1| hypothetical protein COCSADRAFT_36763 [Cochliobolus sativus ND90Pr]
Length = 526
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 59/145 (40%), Gaps = 37/145 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL--------NRLVELHGS------- 1042
SVDW VR AD+ EI +AIK G ++ + IK L R EL S
Sbjct: 245 SVDWNKVRQADQKEIFEAIKSGGLADVKSKDIKRILEMVWEENQTRRKELQSSSNKAPGS 304
Query: 1043 -------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
I L+ L + D L G+G K+ CV L LQ +
Sbjct: 305 ANEAEEEKSAEIEKASQDVISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 364
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGD 1108
F VD +V R+ LGWV P PGD
Sbjct: 365 FAVDTHVFRLCQWLGWV---PPPGD 386
>gi|409728179|ref|ZP_11271049.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|448722675|ref|ZP_21705208.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|445789100|gb|EMA39793.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
Length = 270
Score = 58.2 bits (139), Expect = 4e-05, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
+ SD Q D L Y GE+ + A+ D+ ++A+ I+ G N +
Sbjct: 65 QNTSDKASQPAHDALMARYGEGEDLA---------VALSETDQDDLAETIQPAGLYNQKS 115
Query: 1027 GRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA- 1083
+ R+VE +G E++ P V++ LLD G+G K+ +CV L S
Sbjct: 116 ETLGRIAGRVVEEYGGAAAFDEFVTAEDPATVRDTLLDFSGVGPKTADCVLLFSGGRAGV 175
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
FPVD +V RI R+G P + L + P +K + H
Sbjct: 176 FPVDTHVHRIYRRIGVAPPDADHEGVRAVLEDQVPA----------------EKCGFG-H 218
Query: 1144 YQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASARFALP--GPSE 1189
I FG+ FCK R P C ACP+ C A+ P P+E
Sbjct: 219 TATIQFGREFCKARKPACLDDPDACPMADLCDQVGVYPATDEVVDPADAPAE 270
>gi|448613277|ref|ZP_21663157.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
gi|445740174|gb|ELZ91680.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
Length = 268
Score = 58.2 bits (139), Expect = 4e-05, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS-IDLE-WLRNVPPDKVKEY 1059
E++ AD I DAI+ G N + I+ ++ GS D + ++R P V++
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNRKSKLIQGVAEDVLTNFGSEADFDRYVREEDPSTVRDR 149
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL++ G+G K+ +CV L + + FPVD +V RIA RLG + + L +E P
Sbjct: 150 LLEMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGIASVDADHEAVRATLEREVP 209
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
+K + H MI FG+ FC RSP C CP+ C+
Sbjct: 210 A----------------EKCGFG-HTAMIQFGREFCTARSPVCLDDDDECPMADVCEQ 250
>gi|390443653|ref|ZP_10231441.1| endonuclease III [Nitritalea halalkaliphila LW7]
gi|389666256|gb|EIM77710.1| endonuclease III [Nitritalea halalkaliphila LW7]
Length = 233
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
G + +E ++ P V E L+ + G+G K+ + + VD +V R++ RLG
Sbjct: 94 GKMLVEEFQSEVPQTVNE-LIKLPGVGRKTANVITSVIWHQPNMAVDTHVFRVSRRLGLA 152
Query: 1101 PLQP-LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSP 1159
PL P ++ HL++ P ++ +++ H+ +I G+ C RSP
Sbjct: 153 PLTAKTPLEVEKHLIRHIP-----------------KEHVHQAHHWLILHGRYTCLARSP 195
Query: 1160 NCGACPLRGECKHFASAVASARFALPGP 1187
C AC + CKHF + + R P P
Sbjct: 196 KCSACSITHLCKHFERGLRAKRKKDPLP 223
>gi|448449860|ref|ZP_21591955.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
gi|445812626|gb|EMA62617.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
Length = 233
Score = 58.2 bits (139), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 986 STGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSID 1044
S E D+ D D+ AV AD E+ + I+ G + A RI+ L + E G+
Sbjct: 61 SRAAEALFDRYD--DFAAVEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYS 118
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
L +L +P D+ K++L +I+G+G K+ V VD +V R++ R G VP
Sbjct: 119 LAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESA 178
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
H L ++ P D+ T Y LH +I G+ C R +C
Sbjct: 179 SNERAHEALDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADC 218
>gi|167042822|gb|ABZ07540.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine microorganism HF4000_ANIW137I15]
Length = 257
Score = 57.8 bits (138), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E +R + +A I+ N+ A R+K F+ L H DL L +P D +++YLL
Sbjct: 72 EGLRRIPKFRLAHLIRPARFFNVKADRLKAFVRFLWVGHQG-DLNLLFGLPADLLRKYLL 130
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+++G+G ++ + + L + + F VD RI RLG P G L+E
Sbjct: 131 ELKGIGPETADSILLYAAEFPVFVVDAYTHRIFSRLGLYQ-GPPSGRKGYEALQEG---- 185
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
+ R D E H ++ GK +C+ R P C CPL C + ++A
Sbjct: 186 ------FHRFLSRDAPLYNEYHALLVELGKEYCRPR-PKCEFCPLSSICAYPSAA 233
>gi|347525379|ref|YP_004832127.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
gi|345284338|gb|AEN78191.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
Length = 213
Score = 57.8 bits (138), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD SE+ IK G + A + LVE VP K +E L+D+ G+
Sbjct: 68 ADPSEVEKYIKTIGLYHNKAKYLVGCAKDLVERFDG-------KVP--KTREELMDLTGV 118
Query: 1067 GLKS--VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
G K+ VE + AF VD +V R+A RL V +P L I E +M+++
Sbjct: 119 GRKTANVELAECFGIP--AFAVDTHVSRVANRLALV--EPTKNVLEI----ERQLMEQV- 169
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
D+ E H+ +I +G+ C R P C CPL ECK+F
Sbjct: 170 ----------DESRWIEAHHLLIAWGRNQCLARKPKCETCPLSFECKYF 208
>gi|227494411|ref|ZP_03924727.1| endonuclease III [Actinomyces coleocanis DSM 15436]
gi|226832145|gb|EEH64528.1| endonuclease III [Actinomyces coleocanis DSM 15436]
Length = 226
Score = 57.8 bits (138), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +++A + G QN A +++E LV E+ VP ++ E L + G+
Sbjct: 82 ADHADLASITRVLGFQNKRATQLQELSQALVA-------EYAGEVPANR--EALQKLPGV 132
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V + A VD +VGR+ RLGW + P + + K P D
Sbjct: 133 GRKTAHVVLGNAFGIPAITVDTHVGRVTTRLGWSQAKT-PLAIEKDIAKLLPGYD----- 186
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
W LC+ ++I G+ C R P CG CPL+ C A +A
Sbjct: 187 -WTLLCH-----------RLIEHGRAICDARKPLCGQCPLQQLCPASADYLA 226
>gi|448428859|ref|ZP_21584485.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
gi|445675837|gb|ELZ28365.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
Length = 233
Score = 57.8 bits (138), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 986 STGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSID 1044
S E D+ D D+ A+ AD E+ + I+ G + A RI+ L + E G+
Sbjct: 61 SRAAEALFDRYD--DFAAIEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYS 118
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
L +L +P D+ K++L +I+G+G K+ V VD +V R++ R G VP
Sbjct: 119 LAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESA 178
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
H L ++ P D+ T Y LH +I G+ C R +C
Sbjct: 179 SNERAHEALDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADC 218
>gi|406911545|gb|EKD51317.1| Helix-hairpin-helix motif:HhH-GPD [uncultured bacterium]
Length = 212
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+A+ IK G NI R+K FL + G D ++ ++E+LL I G+G ++
Sbjct: 71 VAELIKPAGYFNIKTKRLKSFLGAIKREQGDFDTL--SSLSTSSLREFLLSISGIGPETA 128
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
+ + L + + F VD R+ R L+ E ++Q Y L
Sbjct: 129 DSMMLYAFERPVFVVDAYTNRMLTRHS--------------LVDEEADYFRLQEYFEDHL 174
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
D E H ++ GK FC+K +P C CPLR E
Sbjct: 175 -EKDVALFNEYHALIVKLGKEFCRKSNPKCEECPLREE 211
>gi|448726638|ref|ZP_21709032.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
gi|445793968|gb|EMA44532.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
Length = 267
Score = 57.4 bits (137), Expect = 6e-05, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEG 1065
++S +A+ I+ G N + + R+V+ +GS E++ + P V+E LLD G
Sbjct: 96 EQSTLAETIEPAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTDEEPATVRETLLDFSG 155
Query: 1066 LGLKSVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L S FPVD +V RI RLG P V + ++
Sbjct: 156 VGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADA----------DHEKVREVLE 205
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVASA 1180
+ C H I FG+ +C RSP C ACP+ C+ A+
Sbjct: 206 AQVPAEKCGFG-------HTATIQFGREYCTARSPACLDDPDACPMGDLCEQVGVYPATD 258
Query: 1181 RFALPGPSE 1189
P ++
Sbjct: 259 EVVDPAEAD 267
>gi|413944179|gb|AFW76828.1| hypothetical protein ZEAMMB73_573219 [Zea mays]
Length = 264
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
W+ V + + DAI+ G A RI+ L + E G I LE+LR + D+VK+ L
Sbjct: 171 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 230
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
+G+G K+V CV + LQ FPVD +
Sbjct: 231 SRFKGIGPKTVACVLMFYLQKDDFPVDTH 259
>gi|340975657|gb|EGS22772.1| hypothetical protein CTHT_0012470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 628
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-------VEL----------- 1039
S+DW+ VR E+A+ IK G A IK+ L+ + +E
Sbjct: 376 SIDWDKVRLGSHRELAETIKIAGNGPKKASHIKQILDMVYAENLEHIEAQTVDKGSEPGG 435
Query: 1040 -HGS-----IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRI 1093
HG+ + L+++ + D+ L+ G+G+K+ CV L L+ F VD +V +
Sbjct: 436 KHGTDRQDLLSLDYMHRMTKDEAMAKLVTYPGVGIKTAACVTLFCLRLPCFAVDTHVHKF 495
Query: 1094 AVRLGWVPLQPLPGDLHIH 1112
LGWVP P + H
Sbjct: 496 CRWLGWVPPNADPDNCFRH 514
>gi|448473653|ref|ZP_21601795.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
gi|445819165|gb|EMA69014.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
Length = 232
Score = 57.4 bits (137), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVP 1052
D+ D D+ A+ AD E+A+ I+ G + A RI+ L + E G+ L +L +
Sbjct: 69 DRYD--DFAAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMA 126
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
D K +L DI+G+G K+ V VD +V R++ R G VP H
Sbjct: 127 TDAAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPASASNQAAHNR 186
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG--ACPLRGEC 1170
L + P + +Y LH +I G+ C R +C C +C
Sbjct: 187 LDEIVP-----------------DELIYPLHVLLIRHGREHCSARGADCDNPVCATYCDC 229
Query: 1171 KH 1172
++
Sbjct: 230 EY 231
>gi|392530023|ref|ZP_10277160.1| endonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 214
Score = 57.4 bits (137), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA I D IK G A I+ +L+E E+ VP K ++ L
Sbjct: 63 EAFLAVPVEAIMDDIKTIGLFRNKARHIQGCCRKLIE-------EFNGEVP--KTRKELT 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G+K+ V + A VD +V R+ RLG L+ G++ L+K+ P
Sbjct: 114 SLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLMKKLP--- 170
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ E H+++I FG+ C RSP C CPL EC+
Sbjct: 171 --------------ESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|313886400|ref|ZP_07820122.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
gi|312924146|gb|EFR34933.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
Length = 219
Score = 57.4 bits (137), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL-PGDLHIHLLK 1115
+E L + G+G KS + + + A PVD +V R+A R+G + P + L+K
Sbjct: 109 REELEALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVK 168
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
P Q L H+Q+I G+ CK R P C C L C+H+A+
Sbjct: 169 RIP-----------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYAT 211
Query: 1176 A 1176
A
Sbjct: 212 A 212
>gi|448501053|ref|ZP_21612062.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
gi|445695794|gb|ELZ47894.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
Length = 233
Score = 57.4 bits (137), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+ + I+ G + A RI+ L + E G+ L +L +P D K
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRSLTAIREETGGAYSLAFLDALPTDDAKA 132
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L +I+G+G K+ V VD +V R++ R G VP H L + P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHDVLDERVP 192
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG--ACPLRGECKH 1172
+ +Y LH +I G+ C R+ +C C +C+H
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNADCDNPVCEAYCDCEH 231
>gi|312623064|ref|YP_004024677.1| hhh-gpd family protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203531|gb|ADQ46858.1| HhH-GPD family protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 225
Score = 57.4 bits (137), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K++ + E + E ++A+ IK G N A R+KEF N L S DLE L +
Sbjct: 59 KLNILSVEGILQTPEEKLAELIKAAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDIS 117
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+++ LL +G+G ++ + + L + F VD R+ RLG + + +
Sbjct: 118 SLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI--------- 168
Query: 1115 KEYPVMDKIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
Y + I M L P+ + + E H ++ K CK + P C C LR C ++
Sbjct: 169 -SYNDLQAIIMANLTPQTKFFN-----EFHALIVKHCKEICKSKKPICNKCCLRLICNYY 222
>gi|448432620|ref|ZP_21585676.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
gi|445686876|gb|ELZ39180.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
Length = 232
Score = 57.4 bits (137), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD + + I+ G + A RI+ L + E G+ L +L + D K
Sbjct: 73 DFAAIEAADHEALRETIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L DI+G+G K+ V VD +V R++ R G VP G H L + P
Sbjct: 133 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDERVP 192
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ +Y LH +I G+ C R+P+C
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDC 218
>gi|126698144|ref|YP_001087041.1| endonuclease III [Clostridium difficile 630]
gi|260682265|ref|YP_003213550.1| endonuclease iii [Clostridium difficile CD196]
gi|260685864|ref|YP_003216997.1| endonuclease iii [Clostridium difficile R20291]
gi|115249581|emb|CAJ67398.1| Endonuclease III [Clostridium difficile 630]
gi|260208428|emb|CBA60983.1| endonuclease iii [Clostridium difficile CD196]
gi|260211880|emb|CBE02318.1| endonuclease iii [Clostridium difficile R20291]
Length = 201
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 59 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 108
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 109 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 161
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 162 HS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 194
>gi|433590937|ref|YP_007280433.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334470|ref|ZP_21523645.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
gi|433305717|gb|AGB31529.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|445619802|gb|ELY73319.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
Length = 272
Score = 57.0 bits (136), Expect = 7e-05, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 989 EERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--E 1046
E D +D V E++ A++S +A+ I G N + I + ++E GS
Sbjct: 81 ERYDGDDIDLV--ESLAAAEQSTLAETISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDA 138
Query: 1047 WLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
++++ PP +V+E LL++ G+G K+ +CV L + + FPVD +V RI R+G P
Sbjct: 139 FVKDEPPAEVRETLLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDAD 198
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC---- 1161
+ L ++ P C H I FG+ +C+ R+P C
Sbjct: 199 HEAVREVLERDVPAAK----------CGFG-------HTATIQFGREYCRARTPACLEDP 241
Query: 1162 GACPLRGEC 1170
ACP+ C
Sbjct: 242 DACPMADRC 250
>gi|218530896|ref|YP_002421712.1| endonuclease III FCL domain-containing protein [Methylobacterium
extorquens CM4]
gi|218523199|gb|ACK83784.1| Endonuclease III FCL domain protein [Methylobacterium extorquens CM4]
Length = 254
Score = 57.0 bits (136), Expect = 8e-05, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A EI I + A RIK L + E G++ L++L ++ D+ + +
Sbjct: 86 DWTEIDAASVKEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A R G + + G H L + P
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGAKVDVGPSHAVLRAQLP 205
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D W + LY+ H ++ G+ C RSP CG C L C
Sbjct: 206 --DD-----W------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|305664312|ref|YP_003860600.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
gi|304378881|gb|ADM28720.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
Length = 239
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID-----LEWLRNV 1051
D + + + D S I +AI +AG L L+EL I L+N+
Sbjct: 77 DVITPDRILSIDPSVIINAIN-------VAGLANRRLQSLLELSRHIKENPKFFNDLKNL 129
Query: 1052 PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
D ++ LL I G+G K+ + L+ + FP+D ++ R+ RLG V
Sbjct: 130 SVDDARKALLSIYGIGYKTADVFLLMIYKKPTFPIDTHIMRVLKRLGIV----------- 178
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
H Y + K + + + + L LH +I G++ CK R+P C CP+ +C
Sbjct: 179 HEDMGYEDIRKFILGVVEH----NPEELLSLHISLIAHGRMICKARNPRCSECPINTKC 233
>gi|330934949|ref|XP_003304766.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
gi|311318473|gb|EFQ87134.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
Length = 527
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 37/145 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH---------------GS 1042
SVDW VR AD+ EI +AIK G ++ + IK+ L + E + GS
Sbjct: 246 SVDWNRVRQADQKEIFEAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSGKAPGS 305
Query: 1043 ID-------------------LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
D L+ L + D L G+G K+ CV L LQ +
Sbjct: 306 ADEAEGEKHAEVEKAEQNIVSLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 365
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGD 1108
F VD +V R+ LGWV P PGD
Sbjct: 366 FAVDTHVFRLCKWLGWV---PPPGD 387
>gi|336121084|ref|YP_004575859.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
gi|334855605|gb|AEH06081.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
Length = 217
Score = 57.0 bits (136), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D +D + + + ++ + IK G NI A R+K +V+ + + D + +
Sbjct: 51 DLIDEKRILKINTEKLKELIKPAGFYNIKAERLKNITKYIVDNYKTTDELAKTEKDTNIL 110
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ LL+I+G+G ++ + + L +L F VD RI R G + + + D I L+ E
Sbjct: 111 RNELLNIKGVGKETADSILLYALDRKIFVVDAYTRRIFSRYGIIN-KDMDYD-EIRLIFE 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ + +Y E H ++ GK +CKK++P C CPL C+
Sbjct: 169 DNIIPSLNIY-------------KEYHALIVELGKNYCKKKNPLCNTCPLNLYCR 210
>gi|15643134|ref|NP_228177.1| endonuclease III [Thermotoga maritima MSB8]
gi|403252815|ref|ZP_10919120.1| endonuclease III [Thermotoga sp. EMP]
gi|418046300|ref|ZP_12684394.1| endonuclease III [Thermotoga maritima MSB8]
gi|8134433|sp|Q9WYK0.1|END3_THEMA RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|4980869|gb|AAD35453.1|AE001716_16 endonuclease III [Thermotoga maritima MSB8]
gi|351675853|gb|EHA59013.1| endonuclease III [Thermotoga maritima MSB8]
gi|402811577|gb|EJX26061.1| endonuclease III [Thermotoga sp. EMP]
Length = 213
Score = 57.0 bits (136), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A ++ D IKE G A RI E LVE +G PD ++E LL + G+
Sbjct: 60 AKPEDLYDLIKESGMYRQKAERIVEISRILVEKYGG--------RVPDSLEE-LLKLPGV 110
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V + + A VD +V RI+ RLGWV + P + L K P
Sbjct: 111 GRKTANIVLWVGFKKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------ED 163
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
LW ++ M+ FG+ CK ++P C C L+ C+ +
Sbjct: 164 LWG-----------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|11499282|ref|NP_070520.1| endonuclease III [Archaeoglobus fulgidus DSM 4304]
gi|2648861|gb|AAB89556.1| endonuclease III (nth) [Archaeoglobus fulgidus DSM 4304]
Length = 209
Score = 57.0 bits (136), Expect = 8e-05, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E EIA+ IK G + A R+KE +LVE + S VP E L+ + G+G
Sbjct: 71 EEEIAELIKGVGFYRVKAKRLKELAKKLVEDYSS-------EVPLSF--EELVKLPGIGR 121
Query: 1069 KSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
KS V L+ I A PVD +V RIA RLGW P + L + +P +
Sbjct: 122 KSANVV--LAYSDIPAIPVDTHVHRIANRLGWARTTK-PEETEEVLKRLFP------LEF 172
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
W ++ + M+ FG+ CK + P C CP++G
Sbjct: 173 WEKV-----------NRAMVGFGQTVCKPQKPLCDECPIKG 202
>gi|288560832|ref|YP_003424318.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
gi|288543542|gb|ADC47426.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
Length = 215
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D AV A + + IK G + A RI E L++ +G VP + +
Sbjct: 64 DIYAVADAPVEHVQELIKPAGFYRVKAARILEVSRILIDQYGG-------EVP--REMDE 114
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+L + G+G K+ CV + + Q A PVD +V RI+ R G + P + E +
Sbjct: 115 MLKLPGVGRKTANCVIVFAFQDAAIPVDTHVHRISNRWGIADTKD-PEE------TEQVL 167
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
M+K+ LW +L+ M+ FG+ C+ P C CP+ C + S +
Sbjct: 168 MEKVPKDLW-----------VDLNDLMVQFGQTICRPIGPQCDKCPISDLCDYDVSKL 214
>gi|94268173|ref|ZP_01291108.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
gi|93451700|gb|EAT02475.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
Length = 217
Score = 57.0 bits (136), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
+E+A I+ G NI AGR++ L R+ H S L ++ LL+I+G+G +
Sbjct: 74 AELAALIRPAGYYNIKAGRLQNLLGRIHAEHDS--LAAFLAQQSTTLRRQLLEIKGIGPE 131
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ + + L + Q F VD RI R G +P + +Y + +I P
Sbjct: 132 TADSIMLYAAQRPVFVVDTYTHRIFSRHGLLPEE-----------ADYHQVQEIFHDALP 180
Query: 1130 RLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPL 1166
+ LY E H ++ GK +C+K +P C CPL
Sbjct: 181 A-----EAPLYNEYHALIVRLGKEYCRKSNPRCPTCPL 213
>gi|172057780|ref|YP_001814240.1| endonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990301|gb|ACB61223.1| endonuclease III [Exiguobacterium sibiricum 255-15]
Length = 222
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
EI + IK G A IK +L+ LHG VP D+ L + G+G K+
Sbjct: 72 EIEEKIKRLGLYRNKAKNIKALAEQLLVLHGG-------EVPTDRAG--LEALPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ AF VD +V R++ RLG + D + + E +M + + W +
Sbjct: 123 ANVVLSVAFDVPAFAVDTHVERVSKRLGICRWK----DNVMQV--EQTLMKRFKRERWSK 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L H+Q I FG+ CK + PNC CPL C+
Sbjct: 177 L-----------HHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|322708253|gb|EFY99830.1| base excision DNA repair protein [Metarhizium anisopliae ARSEF 23]
Length = 364
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE + ++ + +I+ G + I L + +G L+ L + + +
Sbjct: 185 WEEIANGGQARLEKSIQTGGLAATKSKVIIGILQQTKAKYGLYSLDHLFEASDEDAMKEM 244
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ +G+G K+ CV L LQ +F VD +V RI LGW P + HL P
Sbjct: 245 ISFQGVGPKTASCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDE 304
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGACPLR 1167
+K Y LH +T G+ CK N C LR
Sbjct: 305 EK-----------------YPLHVLFVTHGRQCEECKAGGSNAKTCELR 336
>gi|171684933|ref|XP_001907408.1| hypothetical protein [Podospora anserina S mat+]
gi|170942427|emb|CAP68079.1| unnamed protein product [Podospora anserina S mat+]
Length = 813
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-------GS-------- 1042
S+DWE VR + + ++I+ G A IK L+++ E + G+
Sbjct: 474 SIDWEKVRVSSPQALVNSIRISGNGPKKAQHIKLILDKVYEENLERMKQAGTAENTDKDG 533
Query: 1043 -----IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1097
+ L+++ + D+ E + G+G+K+ CV L L+ F VD +V + L
Sbjct: 534 APPDLLSLDYMHAMTKDQAMEKFVSFPGIGIKTAACVSLFCLRMPCFAVDTHVHKFCRWL 593
Query: 1098 GWVPLQPLPGDLHIH 1112
GW P++ P ++ H
Sbjct: 594 GWTPVKADPDNVFRH 608
>gi|78043065|ref|YP_359967.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|77995180|gb|ABB14079.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 210
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 37/168 (22%)
Query: 1009 ESEIADAIKERG-----QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDI 1063
E E++ I+ G +N+I +I E L+R E HG + PD E LL +
Sbjct: 69 EEELSRQIRSLGLYRNKARNLI--KIAEILDR--EYHGQV---------PDSFAE-LLKL 114
Query: 1064 EGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ E + + +FPVD +V R+A RLG + P + L K +P
Sbjct: 115 PGVGPKTAEVIVGVGFNKPSFPVDTHVFRVARRLGLSKART-PEGVSFDLKKIFP----- 168
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ +LH+++I FG+ CK + P+C CP C+
Sbjct: 169 ------------PNSWIDLHHRLIFFGRRICKAQKPSCNICPFPEFCQ 204
>gi|452209864|ref|YP_007489978.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099766|gb|AGF96706.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 205
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +I + I++ G + AGRIKE L+E + VP D E LL + G+
Sbjct: 63 ADVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------RVPDDM--ETLLKLPGV 113
Query: 1067 GLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
G K+ CV + L+ A VD +V RI+ RLG V + P + + L K P
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGLVVTKN-PEETEMELKKLLP------- 165
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
QK ++ ++ FG+ C+ SP CG C L C
Sbjct: 166 ----------QKYWRHVNILLVKFGQNVCRPISPRCGICVLNDIC 200
>gi|393796715|ref|ZP_10380079.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 175
Score = 56.6 bits (135), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ I+ ++ VP + E L+++ G+G K+ CV + + A PVD++V RI+
Sbjct: 51 RIIEVAKIINSKYKGKVPDNL--EKLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRIS 108
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + L++ P +K +++ + +G+ C
Sbjct: 109 NRLGLVDTKT-PEETEQELMRIIP-----------------KKFWIDINDTFVMYGQNIC 150
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS 1179
K SP C C ++ +CK + + AS
Sbjct: 151 KPISPMCSVCKIKNDCKFYKTKNAS 175
>gi|414083690|ref|YP_006992398.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997274|emb|CCO11083.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 214
Score = 56.6 bits (135), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K ++ L + G+G+K+ V + A VD +V R+ RLG L+ G++ L+
Sbjct: 107 KTRKELTSLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ P + E H+++I FG+ C RSP C CPL EC+
Sbjct: 167 KKLP-----------------ESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|383319923|ref|YP_005380764.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
gi|379321293|gb|AFD00246.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
Length = 240
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 1006 CADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
C+ E +IA IK N A +IK F+ + +G DL + + +++ LL ++G
Sbjct: 77 CSVE-DIAPLIKPARFYNSKAVKIKNFMEFFFKEYGG-DLAAMSSEDSASLRKKLLAVKG 134
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
LG ++V+C+ L + F VD RI +R G L GD P D+IQ
Sbjct: 135 LGKETVDCILLYACGKPVFVVDAYTKRIFLRYG-----ILNGD---------PTYDEIQG 180
Query: 1126 YLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPL 1166
Y L LY + H Q++ G C+ + P CG+CP+
Sbjct: 181 YFMASL--PPNAALYNDYHAQIVHLGSSICRPK-PLCGSCPI 219
>gi|392588793|gb|EIW78124.1| DNA glycosylase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 276
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELH--GSIDLEWLR--NVPPDKVKEYLLD 1062
A +++ +AIK G N A I+ L + E H G DL+ L +V ++V L+
Sbjct: 114 APAADVVEAIKHGGLANRKARIIQNLLVSVKEAHPEGRYDLQHLLAGDVSDEEVMRSLVQ 173
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
G+G K+ CV + AF VD +V RI LGWVP HL P
Sbjct: 174 YNGVGPKTAACVLAFCMGRDAFAVDTHVFRITRMLGWVPRHADRVSTQAHLELRVP---- 229
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
P L Y LH + G+ ++ + G CPL+
Sbjct: 230 ------PEL-------KYGLHVMFVKHGRACKGCKNGSRGECPLK 261
>gi|392561532|gb|EIW54713.1| DNA glycosylase [Trametes versicolor FP-101664 SS1]
Length = 307
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNV-------- 1051
++ A+ A +++ +AIK G N AG I++ L + HG+ L+ L
Sbjct: 103 NFAAIADAKTADVVEAIKTGGLANKKAGVIQKILAEVHRRHGAYSLQHLAGADVKGKGKA 162
Query: 1052 ------PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+ + L+ +G+G K+ CV L L +FPVD +V R++ LGWVP
Sbjct: 163 AGGAPASDEAAMQELVSYDGVGPKTASCVLLFCLGRSSFPVDTHVFRLSRLLGWVP 218
>gi|448574894|ref|ZP_21641417.1| endonuclease III [Haloferax larsenii JCM 13917]
gi|445732573|gb|ELZ84155.1| endonuclease III [Haloferax larsenii JCM 13917]
Length = 267
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQP 1104
+W+R P+ V+E LL+++G+G K+ +CV L + + FPVD +V RI+ R+G P
Sbjct: 135 QWVREGDPETVRERLLEMKGVGPKTADCVLLFAGGRDGVFPVDTHVHRISRRIGLAPADA 194
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC--- 1161
+ L ++ P C H MI FG+ +C R P C
Sbjct: 195 DHEGVRERLERDVP----------GEACGFG-------HTAMIQFGREYCTARKPACLDG 237
Query: 1162 -GACPLRGEC 1170
ACP+ C
Sbjct: 238 PEACPMDDVC 247
>gi|148269689|ref|YP_001244149.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170288365|ref|YP_001738603.1| endonuclease III [Thermotoga sp. RQ2]
gi|281411600|ref|YP_003345679.1| endonuclease III [Thermotoga naphthophila RKU-10]
gi|147735233|gb|ABQ46573.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170175868|gb|ACB08920.1| endonuclease III [Thermotoga sp. RQ2]
gi|281372703|gb|ADA66265.1| endonuclease III [Thermotoga naphthophila RKU-10]
Length = 213
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A ++ + IKE G A RI E LVE +G PD ++E LL + G+
Sbjct: 60 AKPEDLYNLIKESGMYRQKAARIVEISRILVERYGG--------RVPDSLEE-LLKLPGV 110
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V + + A VD +V RI+ RLGWV + P + L K P
Sbjct: 111 GRKTANIVLWVGFRKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------ED 163
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
LW ++ M+ FG+ CK ++P C C L+ C+ +
Sbjct: 164 LWG-----------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|335420680|ref|ZP_08551717.1| HhH-GPD family protein [Salinisphaera shabanensis E1L3A]
gi|334894416|gb|EGM32612.1| HhH-GPD family protein [Salinisphaera shabanensis E1L3A]
Length = 230
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
I+ G NI A R++ VE G E L+ D ++ LL + G+G ++ + +
Sbjct: 83 IRRAGPHNIKAKRLRALCAWFVEQGG---FEGLQTRDSDTLRRELLALHGIGHETADVIL 139
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
L + Q AF D RI R GW + Y M + + P D
Sbjct: 140 LYAFQRPAFVADAYAFRIMERYGWX-----------RGTRNYERMRRSIEAVGPE----D 184
Query: 1136 QKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
Y ELH ++ K C KR P+C C L C H VA+
Sbjct: 185 DAPFYDELHALIVAHAKQRCHKREPDCACCVLNDCCDHGRGWVAA 229
>gi|399069064|ref|ZP_10749265.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
gi|398045317|gb|EJL38052.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
Length = 242
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG--SIDLEWLRNVPPDKVKE 1058
WE + A ++ + + IKE A + L RL+++ + L+ L + D +
Sbjct: 66 WEDLAEAPDAVVLELIKEVSYPEDKARHLPHAL-RLIQVRSGWKLSLDHLSELELDSARW 124
Query: 1059 YLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
+L + G+G+K V S L A VD +V R+A RLG +P + L+
Sbjct: 125 WLQGLPGVGVKVAASVLNFSPLNMRALVVDTHVHRVAGRLGLIPASYDTAHAYRALMDLV 184
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P W + LYELH+ M G++ C +P CGAC L+ C
Sbjct: 185 PDS-------W------TAEDLYELHWLMKGLGQLLCGHHAPRCGACSLKATC 224
>gi|167645377|ref|YP_001683040.1| HhH-GPD family protein [Caulobacter sp. K31]
gi|167347807|gb|ABZ70542.1| HhH-GPD family protein [Caulobacter sp. K31]
Length = 242
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG--SIDLEWLRNVPPDKVKE 1058
WE + +E+ D IK+ A + L RL+++ + L+ L + D +
Sbjct: 66 WEDLAETPAAEVQDLIKDVTFPEEKARHLPHAL-RLIQVRSGWKLSLDHLAELELDSARW 124
Query: 1059 YLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
+L + G+G+K V S L A VD +V R+A R+G VP + L+
Sbjct: 125 WLQGLPGVGVKVAASVLNFSPLNMRALVVDTHVHRVASRMGLVPASYDTAHAYRALMDLV 184
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P W + LYELH+ M G++ C +P CGAC L+ C
Sbjct: 185 PDS-------WT------AEDLYELHWLMKGLGQLLCSHHAPRCGACALKATC 224
>gi|189200344|ref|XP_001936509.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983608|gb|EDU49096.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 522
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN--------RLVELHGS------- 1042
SVDW VR AD+ E+ +AIK G ++ + IK+ L R EL S
Sbjct: 241 SVDWNRVRQADQKEVFEAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSDKAPGS 300
Query: 1043 -------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
I L+ L + D L G+G K+ CV L LQ +
Sbjct: 301 ANEAEGEKHAEVAKAEQNIISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 360
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGD 1108
F VD +V R+ LGWV P PGD
Sbjct: 361 FAVDTHVFRLCKWLGWV---PPPGD 382
>gi|222479474|ref|YP_002565711.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
gi|222452376|gb|ACM56641.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
Length = 233
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVP 1052
D+ D D+ A+ AD E+ + I+ G + A RI+ L + E G+ L +L +
Sbjct: 69 DRYD--DFAAIEAADHEELKETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMA 126
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
D KE+L++I+G+G K+ V VD +V R++ R G VP H
Sbjct: 127 TDDAKEWLMEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDA 186
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
L K P + +Y LH +I G+ C R +C
Sbjct: 187 LDKLVP-----------------DELIYPLHVLLIRHGRERCSARGADC 218
>gi|403667443|ref|ZP_10932749.1| endonuclease III [Kurthia sp. JC8E]
Length = 219
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I++ RL++++G +P V+E L+ + G+G K+
Sbjct: 72 ELEQDIRSIGLFRSKAKNIQKLCQRLLDVYGG-------EIPA--VREELVTLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V RIA RLG + ++ E +M K W +
Sbjct: 123 ANVVLSVAFGEPAMAVDTHVERIAKRLGLCRWKDNVLEV------EQTIMKKTPRERWSK 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+QMI FG+ CK + P CG CPL C+
Sbjct: 177 A-----------HHQMIFFGRYHCKSQKPGCGECPLFTLCR 206
>gi|344341598|ref|ZP_08772516.1| HhH-GPD family protein [Thiocapsa marina 5811]
gi|343798530|gb|EGV16486.1| HhH-GPD family protein [Thiocapsa marina 5811]
Length = 242
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 987 TGEERSHDKM---DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI 1043
T ER+ +++ S+D E++ D E+ADA++ G N+ + R++ F +E G
Sbjct: 44 TNVERALERLRLRSSLDAESILALDPPELADALRPSGYFNVKSQRVRGFCAAYLEAGGHP 103
Query: 1044 DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
L L PD ++ LL I+G+G ++ + + L + F VD RI RLG
Sbjct: 104 GLAAL--ATPD-LRARLLAIKGIGPETADDILLYAFDRPVFVVDAYTRRIFERLGL---- 156
Query: 1104 PLPGDLHIHLLKEYPVMDK-IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
L G + Y V+ + + L P D L E H +++ GK C+ R P C
Sbjct: 157 -LAGG------ETYEVIRRGFEQALGP-----DVPMLKEYHALIVSQGKEVCRTR-PACE 203
Query: 1163 ACPLRGEC 1170
C LR C
Sbjct: 204 RCALRRTC 211
>gi|341583175|ref|YP_004763667.1| endonuclease III [Thermococcus sp. 4557]
gi|340810833|gb|AEK73990.1| endonuclease III [Thermococcus sp. 4557]
Length = 238
Score = 56.2 bits (134), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD +KE L+ + G+G K V A PVD +V RI+ RLG P + P
Sbjct: 126 PDDIKE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQP------ 178
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+K++ YL + Y +K +Y +++ M+ GK C+ P C CPLR C +
Sbjct: 179 --------EKVEEYLAELIPY--EKWIY-VNHAMVDHGKSICRPIGPKCDECPLRELCPY 227
>gi|335430781|ref|ZP_08557667.1| endonuclease III [Haloplasma contractile SSD-17B]
gi|334887321|gb|EGM25653.1| endonuclease III [Haloplasma contractile SSD-17B]
Length = 210
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD +E L + G+G K+ V + AF VD +V R++ RLG P +
Sbjct: 105 PD-TREELEKLPGVGRKTANVVLSVCFDQPAFAVDTHVARVSKRLGIANENDTPLKIEKK 163
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+ +P ++ LH+QMI FG+ C R PNC C L+ C
Sbjct: 164 LIDVFP-----------------EEKWCALHHQMIFFGRYHCTARKPNCDECKLKDICTE 206
Query: 1173 F 1173
F
Sbjct: 207 F 207
>gi|448456097|ref|ZP_21594950.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
gi|445812932|gb|EMA62918.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
Length = 233
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKEY 1059
+EA+ AD E+A+ I+ G + A RI+ L + E G+ L +L + D KE+
Sbjct: 74 FEAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKEW 133
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L I+G+G K+ V VD +V R++ R G VP H L + P
Sbjct: 134 LTAIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNRAAHDALDELVP- 192
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG--ACPLRGECKHFA 1174
+ +Y LH +I G+ C R +C C +C+ A
Sbjct: 193 ----------------DELIYPLHVLLIRHGRTHCSARGADCDNPVCEAHCDCEFCA 233
>gi|431931186|ref|YP_007244232.1| endonuclease III-like protein [Thioflavicoccus mobilis 8321]
gi|431829489|gb|AGA90602.1| putative endonuclease III-like protein [Thioflavicoccus mobilis 8321]
Length = 215
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ D +ADAI+ G N+ A R++ F + VE G L L ++ ++E LL
Sbjct: 62 EAILALDHETLADAIRPAGYFNVKARRLRAFCHAFVEEGG---LAGLSSLDTKALRERLL 118
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
I G+G ++ + + L + + F VD R+ RLG L GD ++ D
Sbjct: 119 AINGVGPETADDMLLYAFERPVFVVDAYTRRLFARLGL-----LDGDEGYETIR-----D 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L P D + E H ++ K C+ R P C C L C
Sbjct: 169 AFERALGP-----DTECFNEYHALIVRHAKEVCRTR-PRCAGCCLGELC 211
>gi|323339826|ref|ZP_08080095.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417974103|ref|ZP_12614927.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092699|gb|EFZ35302.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346329558|gb|EGX97853.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 213
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query: 1055 KVKEYLLDIEGLGLKS--VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
K +E L+++ G+G K+ VE + AF VD +V R+A RL V +P L I
Sbjct: 107 KTREELMELTGVGRKTANVELAECFGIP--AFAVDTHVSRVANRLALV--EPTKNVLEI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
E +M+++ D+ E H+ +I +G+ C R P C CPL ECK+
Sbjct: 162 ---ERQLMEQV-----------DESRWIEAHHLLIAWGRHQCLARKPKCETCPLSFECKY 207
Query: 1173 F 1173
F
Sbjct: 208 F 208
>gi|448352659|ref|ZP_21541440.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
gi|445641938|gb|ELY95009.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
Length = 278
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEG 1065
++S++A+ I G N +G + + + + GS ++ + PD V+E LLD+ G
Sbjct: 106 EQSQLAETISSAGLYNQKSGMLIDAAEWVCDEFGSAAEFDRFVTDEAPDTVRETLLDVRG 165
Query: 1066 LGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L + ++ FPVD +V RI R+G P + ++ L E P
Sbjct: 166 VGPKTADCVLLFAGGRNGVFPVDTHVHRIYRRMGIAPPEADHEEVRAVLEAEVPAAK--- 222
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
C H I FG+ FC R P C ACP+ C+
Sbjct: 223 -------CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADLCEQ 260
>gi|294508391|ref|YP_003572449.1| endonuclease III [Salinibacter ruber M8]
gi|294344720|emb|CBH25498.1| Endonuclease III [Salinibacter ruber M8]
Length = 386
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 1055 KVKEYLLDIE---GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
KV E + D+E G+G K+ V ++ A PVD +V R+A R+G
Sbjct: 208 KVPETIDDLETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIG------------- 254
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+KE K R+ + + E H+ +I G+ C RSP+C CP+ ECK
Sbjct: 255 -LVKEDATTPKKVEQQLKRV--IPKAEWGEAHHLLILHGRYTCTARSPDCHDCPIHEECK 311
Query: 1172 HFA 1174
H+
Sbjct: 312 HYG 314
>gi|386857015|ref|YP_006261192.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|380000544|gb|AFD25734.1| Endonuclease III, putative [Deinococcus gobiensis I-0]
Length = 213
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 27/224 (12%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 1026
++N+ + W+ L Y E D D ++ R G I A
Sbjct: 8 QQNTRAVATRQWEALTLTYPVWEAALLDGPDGIETTLRRAGG-----------GLTRIKA 56
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
+ L L G + L +L ++ ++ + L + G+G ++ V L L A PV
Sbjct: 57 DYLYGILAALEGSRGELSLRFLHDLGDEEARAVLEGLPGVGQRTASLVLLFDLVRPAMPV 116
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D N+ R+A RL VP E ++ + + + ++ D +T Y LH
Sbjct: 117 DTNIARMAARLDLVP--------------ETWSTNRTEAW-FGQVIARDWETRYALHLSG 161
Query: 1147 ITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 1190
+ G C R P CG C LR C A+ P P+++
Sbjct: 162 VRHGHETCTPRRPLCGRCVLRDLCPS-AALFLEGEVPEPSPTKR 204
>gi|78356480|ref|YP_387929.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
gi|78218885|gb|ABB38234.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
Length = 221
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 1033 LNRLVEL---HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
L RLV+ D+ L D ++ LLDI+G+G ++ + + L +L +F VD
Sbjct: 90 LRRLVQFLYEEADGDIRNLAGTSMDSLRARLLDIKGIGPETADSILLYALDMPSFVVDAY 149
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
RI VR G LP D+ ++E+ MD + D E H ++
Sbjct: 150 TRRICVRHGL-----LPEDVQYAEMREF-FMDVLPA---------DVSVYNEYHALLVRV 194
Query: 1150 GKIFCKKRSPNCGACPLR 1167
K +C+K P C +CPLR
Sbjct: 195 AKEWCRKTHPRCDSCPLR 212
>gi|332299912|ref|YP_004441833.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
gi|332176975|gb|AEE12665.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
Length = 219
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL-PGDLHIHLLK 1115
+E L + G+G KS + + + A PVD +V R+A R+G + P + L+K
Sbjct: 109 REELEALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVK 168
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
P Q L H+Q+I G+ CK R P C C L C+H+A
Sbjct: 169 RIP-----------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYAV 211
Query: 1176 A 1176
A
Sbjct: 212 A 212
>gi|313901141|ref|ZP_07834629.1| endonuclease III [Clostridium sp. HGF2]
gi|373121433|ref|ZP_09535301.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|312954099|gb|EFR35779.1| endonuclease III [Clostridium sp. HGF2]
gi|371665451|gb|EHO30616.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 215
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
LE V P+ +KE L + G+G K+ VR + + VD +V RI+ RLG +Q
Sbjct: 94 LESFNGVVPESMKE-LTSLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQD 152
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ E + K++ W R H+ I FG+ FC R+P C C
Sbjct: 153 SVE------VVEQKLKRKLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEEC 195
Query: 1165 PLRGECK 1171
P + CK
Sbjct: 196 PFKEFCK 202
>gi|338731336|ref|YP_004660728.1| endonuclease III [Thermotoga thermarum DSM 5069]
gi|335365687|gb|AEH51632.1| endonuclease III [Thermotoga thermarum DSM 5069]
Length = 208
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 72/176 (40%), Gaps = 27/176 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E++ A EI D IK G A RI E ++E + VP D + LL
Sbjct: 59 ESLAKAKPEEIYDLIKPSGMYRQKAERIIEVSKIILEKYNG-------KVPSDL--DELL 109
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V A VD +V RI+ RLG+V + P L K P
Sbjct: 110 KLPGVGRKTANIVLFQGFSIPAIAVDTHVHRISNRLGFVKTKT-PEQTEEELSKVLP--- 165
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
LW ++ M+ FG+ C R+P C CP ECK+ SAV
Sbjct: 166 ---KRLWG-----------PINVAMVNFGRNICLPRNPRCEKCPFSKECKYHNSAV 207
>gi|335357361|ref|ZP_08549231.1| endonuclease III [Lactobacillus animalis KCTC 3501]
Length = 212
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
+E V P KE L+ + G+G K+ + V AF VD +V R+A RLG V
Sbjct: 98 VERFNGVVPKTRKE-LMSLSGVGRKTADVVLAECFGIPAFAVDTHVSRVAKRLGMV---- 152
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
P D + L E +M K+ LW + H++MI +G+ C R+P C +C
Sbjct: 153 -PADSDV-LTIEKILMQKVPQDLW-----------IKGHHRMIFWGRYQCMARNPKCSSC 199
Query: 1165 PLRGEC 1170
PL C
Sbjct: 200 PLLDIC 205
>gi|335996612|ref|ZP_08562529.1| DNA lyase [Lactobacillus ruminis SPM0211]
gi|335351682|gb|EGM53173.1| DNA lyase [Lactobacillus ruminis SPM0211]
Length = 213
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query: 1055 KVKEYLLDIEGLGLKS--VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
K +E L+++ G+G K+ VE + AF VD +V R+A RL V +P L I
Sbjct: 107 KTREELMELTGVGRKTANVELAECFGIP--AFAVDTHVSRVANRLALV--EPTKNVLEI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
E +M+++ D+ E H+ +I +G+ C R P C CPL ECK+
Sbjct: 162 ---ERQLMEQV-----------DENRWIEAHHLLIAWGRHQCLARKPKCETCPLSFECKY 207
Query: 1173 F 1173
F
Sbjct: 208 F 208
>gi|16126511|ref|NP_421075.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|221235291|ref|YP_002517728.1| endonuclease III [Caulobacter crescentus NA1000]
gi|13423785|gb|AAK24243.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|220964464|gb|ACL95820.1| endonuclease III [Caulobacter crescentus NA1000]
Length = 241
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE + A + +A AI++ A R+ L + E G + L L+ + D+ + L
Sbjct: 66 WEDLAEAKTARVAMAIQDVTFPEDKARRLITALRMIEEKVGWLSLSHLKTLEVDQARWEL 125
Query: 1061 LDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+ G+G+K CV S L A VD +V R+A R+G V H
Sbjct: 126 QALPGVGVKVAACVLNFSDLAMRALVVDTHVDRVARRIGLVGSGDTTNTYHT-------- 177
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMIT-FGKIFCKKRSPNCGACPLRGEC 1170
M + P D L+ELH+ M G++ C +P CGACP++ C
Sbjct: 178 ----LMAMAPASWTADD--LFELHWLMKRGLGQMLCGAEAPKCGACPVKQMC 223
>gi|422327448|ref|ZP_16408475.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371663288|gb|EHO28478.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
Length = 215
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
LE V P+ +KE L + G+G K+ VR + + VD +V RI+ RLG +Q
Sbjct: 94 LESFNGVVPESMKE-LTSLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQD 152
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ E + K++ W R H+ I FG+ FC R+P C C
Sbjct: 153 SVE------VVEQKLKRKLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEEC 195
Query: 1165 PLRGECK 1171
P + CK
Sbjct: 196 PFKEFCK 202
>gi|289580004|ref|YP_003478470.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|448281243|ref|ZP_21472550.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|289529557|gb|ADD03908.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|445579173|gb|ELY33569.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
Length = 278
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIEG 1065
++S++A+ I G N + + + + + GS D ++ + PD V+E LLD+ G
Sbjct: 106 EQSQLAETISSAGLYNQKSAMLIDAAEWVCDEFGSADEFDRFVTDETPDTVRETLLDVRG 165
Query: 1066 LGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ +CV L + + FPVD +V RI R+G P + ++ L E P
Sbjct: 166 VGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPEADHEEVRTVLEAEVPAAK--- 222
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
C H I FG+ FC R P C ACP+ C+
Sbjct: 223 -------CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADICEQ 260
>gi|150020336|ref|YP_001305690.1| endonuclease III [Thermosipho melanesiensis BI429]
gi|149792857|gb|ABR30305.1| endonuclease III [Thermosipho melanesiensis BI429]
Length = 203
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
A E ++ + IK G A RI E +V + G + PD ++E LL + G
Sbjct: 61 AKEEDLYELIKPAGLYRQKAKRIIEISKIIVNKFSGKV---------PDTLEE-LLTLPG 110
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ V +S A VD +V RI+ RLGW + P + L+K P
Sbjct: 111 VGRKTANIVLYVSFSKPALAVDTHVHRISNRLGWCKTKN-PNETEFALMKLLP------- 162
Query: 1126 YLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K L+ ++ M+ FGK C R+P C CP+ CK
Sbjct: 163 -----------KDLWGPINGSMVKFGKNVCLPRNPKCDICPIYDYCK 198
>gi|322700299|gb|EFY92055.1| base excision DNA repair protein [Metarhizium acridum CQMa 102]
Length = 364
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE + ++ + +I+ G + I L + +G L+ L + + +
Sbjct: 185 WEEIANGGQARLEKSIQTGGLAATKSKVIIGILQQTKAKYGVYSLDHLFEASDEDAMKEM 244
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ +G+G K+ CV L LQ +F VD +V RI LGW P + HL P
Sbjct: 245 ISFQGVGPKTASCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDE 304
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKKRSPNCGACPLR 1167
+K Y LH +T G+ CK N C LR
Sbjct: 305 EK-----------------YPLHVLFVTHGRQCEECKAGGRNAKICELR 336
>gi|385773949|ref|YP_005646516.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
gi|323478064|gb|ADX83302.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
Length = 233
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+K V E + AD S+I +A+K G A R+K ++E + + L + P
Sbjct: 61 EKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP 120
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+E LL EG+G K+ + V L + FP+D ++ R++ RLG VP+ + L
Sbjct: 121 ---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTL 177
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ + D +Q++L +I G+ CK R P C +C ++ C+++
Sbjct: 178 KELFSAYDLLQLHL-----------------LLIAHGRQTCKARKPLCNSCIIKECCEYY 220
Query: 1174 ASAVASAR 1181
+ AR
Sbjct: 221 SHRDGEAR 228
>gi|332800460|ref|YP_004461959.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|438003859|ref|YP_007273602.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698195|gb|AEE92652.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|432180653|emb|CCP27626.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 217
Score = 55.8 bits (133), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+A+ D+ ++A IK N A ++K F + + +G D+ L ++ LL
Sbjct: 62 DAILAVDKDKLAALIKSTMYYNQKALKLKNFCRYIKQNYGG-DIYSLFEKSIPNMRAELL 120
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
I+G+G ++ + + L + F VD RI RLG+ LP D +Y M
Sbjct: 121 SIKGIGPETADSIILYAAAKPIFVVDAYTRRIFSRLGF-----LPDD------AKYSQMQ 169
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
M P D E H ++ GK +CK + P C CP++ C +
Sbjct: 170 DFFMSNLPS----DVNLFNEYHALIVRLGKDYCKNKKPLCNECPVKNHCSN 216
>gi|240139469|ref|YP_002963944.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|418059134|ref|ZP_12697091.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
gi|240009441|gb|ACS40667.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|373567329|gb|EHP93301.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
Length = 254
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A EI I + A RIK L + E G++ L++L ++ ++ + +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVNEARGW 145
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A R G + + G H L + P
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGAKVDVGPSHAVLRAQLP 205
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D W + LY+ H ++ G+ C RSP CG C L C
Sbjct: 206 --DD-----W------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|83816451|ref|YP_446456.1| endonuclease III [Salinibacter ruber DSM 13855]
gi|83757845|gb|ABC45958.1| endonuclease III [Salinibacter ruber DSM 13855]
Length = 324
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 1055 KVKEYLLDIE---GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
KV E + D+E G+G K+ V ++ A PVD +V R+A R+G
Sbjct: 146 KVPETIDDLETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIG------------- 192
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+KE K R+ + + E H+ +I G+ C RSP+C CP+ ECK
Sbjct: 193 -LVKEDATTPKKVEQQLKRV--IPKAEWGEAHHLLILHGRYTCTARSPDCHDCPIHEECK 249
Query: 1172 HF 1173
H+
Sbjct: 250 HY 251
>gi|336252280|ref|YP_004595387.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
gi|335336269|gb|AEH35508.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
Length = 274
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A++S +A+ I+ G N + I + ++E GS E++++ P +V+E
Sbjct: 91 ESLAGAEQSILAETIQPAGLYNQKSEIIIDTAEWVLEAFGSAAAFDEFVKDEDPAEVRET 150
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL++ G+G K+ +CV L + + FPVD +V RI RLG P + L +E P
Sbjct: 151 LLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLEREVP 210
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKH 1172
+K + H I FG+ +C R P C ACP+ C+
Sbjct: 211 A----------------EKCGFG-HTASIQFGREYCSARKPACLEDPEACPMADLCEQ 251
>gi|429853280|gb|ELA28361.1| HhH-GPD family base excision DNA repair protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 502
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 64/230 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH----------------- 1040
S+DW AVR + ++ A+ G + + ++KE L ++ E +
Sbjct: 234 SIDWNAVRLSPIQKLRKAMITGGLSKVKSEQMKEILEKVFEENQLRKAAFVKEKESGEAA 293
Query: 1041 ----------------------GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
G + L+ +R +P + +L +G+G+K+ C+ L
Sbjct: 294 SVKGAAKMSQGQKDHQLLKIDNGILTLDHIRTMPAAEAMPEILQYKGIGIKTTSCLLLFC 353
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT 1138
LQ +F VD +V R + LGWVP + H +Y V D+++
Sbjct: 354 LQQPSFAVDTHVWRFCLWLGWVPRKASADKTFKHC--DYRVPDELK-------------- 397
Query: 1139 LYELHYQMITFGKIFCKKRSP--------NCGACPLRGECKHFASAVASA 1180
Y LH I G+ + RS N CPL F A A
Sbjct: 398 -YGLHQLFIVHGQQCYRCRSGTAKGTAQWNAVVCPLEHLLDRFEKHEAKA 446
>gi|320334742|ref|YP_004171453.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
gi|319756031|gb|ADV67788.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
Length = 247
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 958 NDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIK 1017
+D + ++N+ T ++ + LRR Y T + D D + E+ + DA
Sbjct: 52 DDLIEAVLNQQNTRATTERQYAALRRAYPTWDAALADGPDGI---------EAVLRDA-- 100
Query: 1018 ERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 1077
G + A + L L+E G + L+ LR++ + L + G+G+K+ + L
Sbjct: 101 GGGLARVKADYVWNILYALLE-RGDLSLQHLRHLDDADARTALESLPGVGMKTASALLLF 159
Query: 1078 SLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQK 1137
L A PVD ++ R++ RL +P + ++LK D++ PR D
Sbjct: 160 DLARPAMPVDGHIDRVSKRLHLIPER-------WNVLKAERWYDEV----LPR----DWA 204
Query: 1138 TLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
Y H I G+ C R+P C AC LR C
Sbjct: 205 QRYAYHVATIRHGRETCLTRAPRCNACVLRDLC 237
>gi|448702713|ref|ZP_21700146.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
gi|445777274|gb|EMA28244.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
Length = 268
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A++S +A+ I G N + I E ++E GS ++++ P V+E
Sbjct: 92 ESLAGAEQSALAETISSAGLYNQKSEIIIETAEWVLEEFGSAAAFDAFVKDENPGTVRET 151
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL++ G+G K+ +CV L + FPVD +V RI RLG P ++ L E P
Sbjct: 152 LLEVRGVGPKTADCVLLFAGGRTGVFPVDTHVHRIYRRLGIAPADADHEEVRAVLEDEVP 211
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
C H I FG+ +C R P C ACP+ C
Sbjct: 212 AAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMGDLC 250
>gi|346314278|ref|ZP_08855799.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906636|gb|EGX76360.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 215
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
LE V P+ +KE L + G+G K+ VR + + VD +V RI+ RLG +Q
Sbjct: 94 LESFDGVVPESMKE-LTSLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQD 152
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ ++ E + K++ W R H+ I FG+ FC R+P C C
Sbjct: 153 -----SVEVV-EQKLKRKLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEEC 195
Query: 1165 PLRGECK 1171
P + CK
Sbjct: 196 PFKEFCK 202
>gi|359406392|ref|ZP_09199085.1| endonuclease III [Prevotella stercorea DSM 18206]
gi|357556157|gb|EHJ37776.1| endonuclease III [Prevotella stercorea DSM 18206]
Length = 212
Score = 55.5 bits (132), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
ADE E+ + +K N A LVEL I E+ VP D + LL + G+
Sbjct: 68 ADEFEVYEYVKSVSYPNAKA-------RHLVELARMIQNEYGGEVPHDF--DSLLRLPGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPVMDKIQM 1125
G K+ + ++ A PVD +V R++ RLG VP P + HL+K P D
Sbjct: 119 GRKTANVMLAVAFGEAAMPVDTHVFRVSHRLGLVPRTADTPLKVEQHLVKHIPADD---- 174
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L + H+ ++ G+ C R +C C + C
Sbjct: 175 -------------LAKAHHWLLLHGRYICTSRKAHCEKCEFKAVC 206
>gi|242780797|ref|XP_002479670.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
gi|218719817|gb|EED19236.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
Length = 407
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 38/142 (26%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL------------------ 1039
SVDW AVR A +E+ +A+K G + IKE LN + E
Sbjct: 221 SVDWNAVRVAPINEVFEAMKSGGLATTKSKYIKEILNMVYEENLARKEAHIKSEEEGNSG 280
Query: 1040 -----HGS---------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 1079
H S + L+W+ + ++ L+ G+G K+ CV L L
Sbjct: 281 PAGAEHESKAQKEVEIALTDENVLSLDWIHALDKEEAMLELIKFPGIGPKTAACVVLFCL 340
Query: 1080 QHIAFPVDVNVGRIAVRLGWVP 1101
Q F VD ++ RI LGW+P
Sbjct: 341 QRPCFAVDTHIFRICKWLGWLP 362
>gi|325106521|ref|YP_004276175.1| endonuclease III [Pedobacter saltans DSM 12145]
gi|324975369|gb|ADY54353.1| endonuclease III [Pedobacter saltans DSM 12145]
Length = 239
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
I L + P+ VK+ L + G+G K+ + + A VD +V R+A R+G
Sbjct: 94 AKILLNEFNGIVPEDVKD-LQKMPGVGRKTANVISSVIYHAPAMAVDTHVFRVANRIGLT 152
Query: 1101 PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN 1160
P + L+ P DKI + H+ +I G+ C RSP
Sbjct: 153 TNAKTPLAVEKQLVAHLP-QDKIHI----------------AHHWLILHGRYICLARSPK 195
Query: 1161 CGACPLRGECKHFA 1174
C CPL G CK++A
Sbjct: 196 CDICPLTGFCKYYA 209
>gi|404398986|ref|ZP_10990570.1| endonuclease III [Pseudomonas fuscovaginae UPB0736]
Length = 212
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+ELHGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIELHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPG------------KNVLEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKQYLLDS------HHWLILLGRYVCQARKPRCGSCRIEDLCEY 205
>gi|432328581|ref|YP_007246725.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135290|gb|AGB04559.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 209
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
AG K+ ++ E+ ID E+ VP + + LL + G+G K+ V
Sbjct: 76 AGFYKQKARKIKEIARIIDEEYDGVVP--RTLDELLKLPGVGRKTANIVLSRCFDQDVIA 133
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VDV+V RI+ RLGWV + P + L+K P +K E++
Sbjct: 134 VDVHVHRISNRLGWVSTR-TPEETERELMKILP-----------------KKYWREINEL 175
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHF 1173
++ FG+ C+ P C CP+ C +F
Sbjct: 176 LVMFGRTICRPVGPKCDECPVSDFCDYF 203
>gi|456012482|gb|EMF46170.1| Endonuclease III [Planococcus halocryophilus Or1]
Length = 226
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 32/192 (16%)
Query: 980 LLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL 1039
L+ R+ + ++ H+ D V E+ I+ G A I+ L++
Sbjct: 47 LVNRVTADLFQKYHEPQDYV------AVSLEELQQDIRSIGLFRNKAKNIQALSRILIDE 100
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGW 1099
H S+ VP D+ + L+ + G+G K+ V ++ A VD +V R+A RLG
Sbjct: 101 HNSV-------VPADR--DLLMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVAKRLGL 151
Query: 1100 VPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSP 1159
+ P + ++K+ P D W + H+Q+I FG+ CK ++P
Sbjct: 152 SRWKDNPLQVEETIMKKTPADD------WSKT-----------HHQIIFFGRYHCKSQNP 194
Query: 1160 NCGACPLRGECK 1171
C CPL C+
Sbjct: 195 GCHICPLFDRCR 206
>gi|218782481|ref|YP_002433799.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218763865|gb|ACL06331.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 210
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I G + A R+KE L+E HG + VP D E LL + G+G K+
Sbjct: 73 ELEELIHATGFFHTKAKRVKECAAALMEKHGGV-------VPRDM--ESLLALPGVGRKT 123
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + + VD +V RI+ RLG+ + P + L+K L P+
Sbjct: 124 ANVVLNAAFEIPGIVVDTHVQRISQRLGFTKFKD-PVKIEFDLMK-----------LLPK 171
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++D + LH +I G+ C R P CG C L CK
Sbjct: 172 ESWID----FSLH--LIYHGRAVCTARKPKCGECTLAEWCK 206
>gi|448350252|ref|ZP_21539071.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
gi|445637759|gb|ELY90907.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
Length = 276
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
P +V+E LLD+ G+G K+ +CV L + + FPVD +V RI RLG P D+
Sbjct: 151 PGEVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHEDVRE 210
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLR 1167
+ E P C H I FG+ FC R P C ACP+
Sbjct: 211 VVEDEVPTAK----------CGFG-------HTATIQFGREFCTARKPACLDDPEACPMA 253
Query: 1168 GECKHFA 1174
C
Sbjct: 254 DICDQVG 260
>gi|124027163|ref|YP_001012483.1| EndoIII-related endonuclease [Hyperthermus butylicus DSM 5456]
gi|123977857|gb|ABM80138.1| predicted EndoIII-related endonuclease [Hyperthermus butylicus DSM
5456]
Length = 242
Score = 54.7 bits (130), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
+M V EAV A E + +AI+ G A ++E R++E G + L +P
Sbjct: 71 EMVGVSPEAVLSAPEDRLIEAIRPAGLARQKARALREAARRILEAGGE---KVLLEMPWR 127
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+++E+LL I G+G K+ + L + F VD + RIA R G L+
Sbjct: 128 ELREFLLSIPGVGKKTADVFLQLVRKAPVFAVDTHAARIAKRWG--------------LV 173
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
E D+ L L + + H +I G+ +C+ R+P C CPLR C +
Sbjct: 174 GEKAGYDETSRAL---LEFFGPERSENAHRLLIALGRTYCRARNPRCDVCPLRDICPY 228
>gi|156100939|ref|XP_001616163.1| endonuclease III homologue [Plasmodium vivax Sal-1]
gi|148805037|gb|EDL46436.1| endonuclease III homologue, putative [Plasmodium vivax]
Length = 417
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQ-HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
E LL + G+G K + +L H VD++V RI+ RL WV + E
Sbjct: 306 EGLLKLPGIGQKVAHLILQTALDTHEGIAVDIHVHRISNRLNWVCTK-----------NE 354
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K++ ++ PR TL+ EL+ ++ FG++ CK +SP+C C + CK++
Sbjct: 355 SATQSKLESFV-PR-------TLWSELNKTLVGFGQVVCKAKSPHCNMCAVTDGCKYY 404
>gi|448728587|ref|ZP_21710911.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
gi|445796772|gb|EMA47269.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
Length = 272
Score = 54.7 bits (130), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 24/188 (12%)
Query: 990 ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EW 1047
+R D++D A+ D+ +A+ I+ G N + + R+V+ +GS +
Sbjct: 81 DRYGDRVDGDLAAALANDDQPTLAETIQSAGLYNQKSATMIAIAERVVDEYGSAAEFDAF 140
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLP 1106
+ P+ V++ LLD G+G K+ +CV L S + FPVD +V RI RLG P
Sbjct: 141 VTEKDPETVRDALLDFSGVGPKTADCVLLFSGGREGVFPVDTHVHRIYRRLGIAPSDADH 200
Query: 1107 GDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----G 1162
++ + + P C H I FG+ +C R P C
Sbjct: 201 EEVRTVVEDQVPAAK----------CGFG-------HTASIQFGREYCSARKPACLDDPD 243
Query: 1163 ACPLRGEC 1170
ACP+ C
Sbjct: 244 ACPMADLC 251
>gi|403069784|ref|ZP_10911116.1| HhH-GPD family protein [Oceanobacillus sp. Ndiop]
Length = 213
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+A I+ G NI A RIK F+N H +I E ++ + ++++ LL + G+G ++
Sbjct: 68 ELAQLIRSSGYFNIKAKRIKAFMNWFKRYHYNI--EEIKKMDSNQLRYELLKVNGIGKET 125
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L + F VD RI R+G+ G + + K+ P
Sbjct: 126 ADVMLLYAFDKPIFVVDAYARRIFYRIGYDMPTAYDG-FRLDVEKQLP------------ 172
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+L Q E H ++ K+ CK SP C CPL C
Sbjct: 173 -SHLQQYN--EYHALLVEHAKVHCKS-SPICKGCPLHSIC 208
>gi|403383159|ref|ZP_10925216.1| endonuclease III [Kurthia sp. JC30]
Length = 219
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A I++ RL+E++G +P ++ E L+ + G+G K+
Sbjct: 72 ELENDIRSIGLFRSKAKNIQKLCARLLEVYGG-------EIPAER--EELVTLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V RI RLG + ++ E +M K + W +
Sbjct: 123 ANVVLSVAFNVPAMAVDTHVERITKRLGLCRWKDSVLEV------EQTIMRKTPIERWNK 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+QMI FG+ CK + P C CPL +C+
Sbjct: 177 A-----------HHQMIFFGRYHCKAQRPQCDTCPLFDDCR 206
>gi|389748166|gb|EIM89344.1| DNA glycosylase [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 986 STGEERSHDKMDSV-DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
STG ++S D + + A ++ +AIK G AG I+ L + E G
Sbjct: 187 STGAKKSLDAAFCFHKFSRIANAPTEDVVEAIKSGGLARRKAGIIQGLLKSVKEKWGRYS 246
Query: 1045 LEWLRN--VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
L++L + + L+ G+G K+ CV L L +F VD +V R++ LGWVP
Sbjct: 247 LQFLMEGRWSDEAIMRELVSYPGVGPKTAACVLLFCLGRDSFAVDTHVFRLSRVLGWVPR 306
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK 1155
+ I + QM+L ++ Y LH M+T G+ CK
Sbjct: 307 AKSATKVAIDRV-------NTQMHL---DVHIPPHLKYPLHVLMVTHGRA-CK 348
>gi|221058032|ref|XP_002261524.1| endonuclease iii homologue [Plasmodium knowlesi strain H]
gi|194247529|emb|CAQ40929.1| endonuclease iii homologue, putative [Plasmodium knowlesi strain H]
Length = 396
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQ-HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
E LL++ G+G K + +L H VD++V RI+ RL WV + E
Sbjct: 285 EGLLELPGIGQKVAHLILQTALDTHEGIAVDIHVHRISNRLNWVCTK-----------NE 333
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K++ Y+ PR + EL+ ++ FG++ CK +SP+C C + CK++
Sbjct: 334 SITQSKLESYV-PRALW------SELNKTLVGFGQVVCKAKSPHCTMCAVTNCCKYY 383
>gi|223995635|ref|XP_002287491.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976607|gb|EED94934.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 251
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK-VKEYLLDIEG 1065
D + I AI+ G I A RI+ L + + + E+L+ D+ +++ L +G
Sbjct: 95 VDTTRIETAIRVAGLAKIRAARIQGMLKTVQQERNDANFEYLQFYDSDEEIQKELSRFKG 154
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
+G K++ CV L +L FPVD +V RI ++GW+
Sbjct: 155 MGPKTISCVLLFALGRPDFPVDTHVLRITKQIGWI 189
>gi|448362246|ref|ZP_21550857.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
gi|445648767|gb|ELZ01715.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
Length = 293
Score = 54.7 bits (130), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIE 1064
A+++++A+ I G N + I R+ + GS ++ + P +V+E LLD+
Sbjct: 120 AEQTQLAETISSAGLYNQKSEVIIGAAERVCDEFGSAAAFDAFVTDEAPGEVRETLLDVR 179
Query: 1065 GLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ +CV L + + FPVD +V RI RLG P D+ L E P
Sbjct: 180 GVGPKTADCVLLFAGGRSGVFPVDTHVHRIYRRLGIAPPDADHEDVREVLEDEVPTAK-- 237
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVAS 1179
C H I FG+ FC R P C ACP+ C A+
Sbjct: 238 --------CGFG-------HTATIQFGREFCTARKPACLDDPEACPMADICDQVGVYPAT 282
Query: 1180 ARFALPGPS 1188
P +
Sbjct: 283 GEVVDPAET 291
>gi|15678789|ref|NP_275906.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621854|gb|AAB85267.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 233
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E V A EI I++ G ++ A R++E ++R++ LE PD + E LL
Sbjct: 78 EDVAYAPLEEIEALIRKAGFYHVKARRVRE-VSRII-------LEEYDGKVPDDINE-LL 128
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ CV + + A PVD +V RI+ R+G V + P + L+K P
Sbjct: 129 KLPGVGRKTANCVLVYAFGRPAIPVDTHVHRISNRIGLVDTRT-PEETERALMKVIP--- 184
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
++ EL+ M+ FG+ C+ P CP+ C ++
Sbjct: 185 --------------REYWIELNDLMVQFGQDICRPLGPRHEECPIADHCDYY 222
>gi|448385412|ref|ZP_21563918.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
gi|445656907|gb|ELZ09739.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
Length = 307
Score = 54.7 bits (130), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A++S +A+ I G N + I + ++E GS ++++ PP +V+E
Sbjct: 127 ESLAAAEQSTLAETISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRET 186
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL + G+G K+ +CV L + + FPVD +V RI R+G P + L ++ P
Sbjct: 187 LLGVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVREVLERDVP 246
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
C H I FG+ +C+ R+P C ACP+ C
Sbjct: 247 AAK----------CGFG-------HTATIQFGREYCRARTPACLEDPDACPMADRC 285
>gi|415719736|ref|ZP_11467775.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
gi|388058996|gb|EIK81763.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
Length = 223
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D ++ A ++ IK G + A I RL + HG V P ++++
Sbjct: 66 DSRSLSAASVKQVESIIKPLGFYRVKAQHIIALSVRLESDFHG---------VVPSRMED 116
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G K+ VR + FPVD +V R+ RLGW P K+Y
Sbjct: 117 -LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRRDCNKP--------KKYA 167
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ I+ + Y D L +++I G+ C R+P C +CPL+ C
Sbjct: 168 NPESIEKEI---TSYFDPADWTNLSHRLILHGRKICTARNPRCASCPLKTTC 216
>gi|448391644|ref|ZP_21566739.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
gi|445665056|gb|ELZ17734.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
Length = 274
Score = 54.3 bits (129), Expect = 5e-04, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 26/198 (13%)
Query: 1002 EAVRCADESEIADAIKERG---QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
E++ A+ S +A+ I G Q++ + R E++ + D ++++ P +V++
Sbjct: 90 ESLAAAERSRLAETISSAGLYNQKSEVLIRTAEWILEEFGSAAAFD-AFVKDEEPAEVRD 148
Query: 1059 YLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
LL + G+G K+ +CV L + + FPVD +V RI R+G P D+ L +E
Sbjct: 149 TLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHEDVRAVLEREV 208
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHF 1173
P C H I FG+ +C R P C ACP+ C
Sbjct: 209 PAAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMADVCDQV 251
Query: 1174 ASAVASARFALPGPSEKG 1191
A+ P + +
Sbjct: 252 GVYPATGEVVDPAEATEA 269
>gi|255513717|gb|EET89982.1| HhH-GPD family protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 252
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 991 RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRN 1050
+SH +D + E + I+ G A R+K ++ GS+
Sbjct: 86 KSHGALDPAK---IASMPEERLQKLIRSSGFYRQKAKRLKAVSKHIISSSGSVKA----F 138
Query: 1051 VPPDK--VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGD 1108
+ DK +++ LL ++G+G ++ + V L + F VD RI RL + +
Sbjct: 139 LSKDKAALRKELLSMDGIGPETADSVLLYAAGKRIFVVDAYTKRIMSRLYGTNPKIGYDE 198
Query: 1109 LHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
L H E P + +Y ++H Q++ GK +CK + P C CPL+G
Sbjct: 199 LQSHFHAELP--KSVSIY-------------KDMHAQLVELGKNYCKTK-PECSPCPLKG 242
Query: 1169 ECKHFASAVA 1178
CK++ + +A
Sbjct: 243 GCKYYKANIA 252
>gi|448306248|ref|ZP_21496157.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
gi|445598662|gb|ELY52717.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
Length = 270
Score = 54.3 bits (129), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Query: 997 DSVDW-EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPP 1053
D +D E++ AD+S +A+ I G N + I + ++E GS ++++ P
Sbjct: 86 DDIDLAESLASADQSMLAETISGAGLYNQKSETIIDTAAWVLEEFGSAAAFDRYVKDETP 145
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
V+E LL + G+G K+ +CV L S + FPVD +V RI R+G P P H
Sbjct: 146 SVVRETLLSVRGVGPKTADCVLLFSGGRSGVFPVDTHVHRIYRRMGIAP----PDADH-- 199
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRG 1168
V + ++ + C H I FG+ +C R+P C ACP+
Sbjct: 200 ----EAVRETLEQDVSAAKCGFG-------HTASIQFGREYCTARTPACLEDPDACPMGD 248
Query: 1169 EC 1170
C
Sbjct: 249 IC 250
>gi|367021722|ref|XP_003660146.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
gi|347007413|gb|AEO54901.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
Length = 573
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 35/178 (19%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------L 1039
S+DW +R + E+A IK G + + IK+ L+ + +
Sbjct: 351 SIDWNKIRLSSHQELAQVIKVAGNGPMKSKHIKQILDIVFDENVQRAMMQDPAPEAGKKA 410
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGW 1099
+ L+++ + D+ + G+G+K+ CV L L+ F VD +V + LGW
Sbjct: 411 QDLLSLDYMHGMTKDEAMAKFVSYPGVGIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGW 470
Query: 1100 VPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKR 1157
VP P + H ++ V D ++ Y LH I G++ K R
Sbjct: 471 VPENADPDNCFRH--GDFMVPDHLK---------------YGLHQLFIRHGQVCFKCR 511
>gi|225849644|ref|YP_002729878.1| endonuclease III [Persephonella marina EX-H1]
gi|225645619|gb|ACO03805.1| endonuclease III [Persephonella marina EX-H1]
Length = 213
Score = 54.3 bits (129), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D VD E V C E ++ + IK G + + EF R +++ DK+
Sbjct: 60 DLVDLEKVSCIHEEKLQEIIKPAGFYKRKSRTLIEFSRRF------------KDIEKDKI 107
Query: 1057 -KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL ++G+G ++ + + L +L F VD R+ R+G+
Sbjct: 108 TRDLLLSVKGIGKETADSILLYALNRPYFVVDAYTRRVFSRIGF--------------FD 153
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ D+IQ L+ + D E H ++ GK FC+K+ P C CPL CK
Sbjct: 154 KNLSYDEIQ-ELFEKNLPEDTDIYKEYHALIVELGKSFCRKK-PLCKDCPLFANCK 207
>gi|302419493|ref|XP_003007577.1| HhH-GPD family base excision DNA repair protein [Verticillium
albo-atrum VaMs.102]
gi|261353228|gb|EEY15656.1| HhH-GPD family base excision DNA repair protein [Verticillium
albo-atrum VaMs.102]
Length = 497
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 68/208 (32%)
Query: 998 SVDWEAVRCADESEIADAIKERG------------------------------------- 1020
S+ W+ VR ++ESE+ DA+K G
Sbjct: 249 SIAWDKVRLSEESEVVDAVKRAGLGPTKGRDIKSILDMVHRDNQIRLAAYVKEKETGEMA 308
Query: 1021 ----QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
QN+ G+ +N++ G + L+ +R + D+ G+G+K+ C+ L
Sbjct: 309 DILGAQNLTQGQKDHQVNKMES--GILTLDHVRGLTSDEAMLEFTKYPGIGVKTSSCLIL 366
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
LQ +F VD +V R L WVP + D ++H E + D+++
Sbjct: 367 FCLQQPSFAVDTHVWRFCKWLKWVPPKASRDDTYMH--GEVRIPDRLK------------ 412
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGAC 1164
Y LH I GK CG C
Sbjct: 413 ---YGLHQLFIRHGK--------ECGRC 429
>gi|344997006|ref|YP_004799349.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965225|gb|AEM74372.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 232
Score = 54.3 bits (129), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + ++A+ IK G N R+KEF N L S DLE L + +++ LL
Sbjct: 74 EGILQTSDEKLAELIKPAGYYNQKTKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLL 132
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + + + Y +
Sbjct: 133 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI----------SYNDLQ 182
Query: 1122 KIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I M L P+ + + E H ++ K CK + P C C LR C +F
Sbjct: 183 AIIMANLTPQTKFFN-----EFHALIVKHCKEICKSKKPICNKCCLRLICNYF 230
>gi|390938170|ref|YP_006401908.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
gi|390191277|gb|AFL66333.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
Length = 234
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
++ + L+++ G+G K+ + V L + FPVD ++ RI +R+G+
Sbjct: 125 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGS----------- 173
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ Y + + M YLD LH +IT G+ C+ R P C C LR C++
Sbjct: 174 -RSYKHISRFWMDNTSPENYLD------LHLYLITHGRRTCRARKPLCNKCVLRDMCRYG 226
Query: 1174 ASAV 1177
AV
Sbjct: 227 VDAV 230
>gi|21227382|ref|NP_633304.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905743|gb|AAM30976.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 205
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A+ +I + I++ G + AGRIKE L+E + VP D E LL + G+
Sbjct: 63 ANVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------KVPDDM--ETLLKLPGV 113
Query: 1067 GLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
G K+ CV + L+ A VD +V RI+ RLG V + P + + L K P
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGRVVTKN-PEETEMELKKLLP------- 165
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
QK ++ ++ FG+ C+ SP CG C L C
Sbjct: 166 ----------QKYWRHVNILLVKFGQNVCRPISPRCGICILNDIC 200
>gi|323489718|ref|ZP_08094945.1| endonuclease III [Planococcus donghaensis MPA1U2]
gi|323396849|gb|EGA89668.1| endonuclease III [Planococcus donghaensis MPA1U2]
Length = 226
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
A I+ L++ H S+ VP D+ + L+ + G+G K+ V ++ A
Sbjct: 87 AKNIQALSQILIDEHNSV-------VPADR--DLLMTLPGVGRKTANVVVSVAFGIPALA 137
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VD +V R+A RLG + P + ++K+ P D W + H+Q
Sbjct: 138 VDTHVERVAKRLGLSRWKDNPLQVEETIMKKTPADD------WSKT-----------HHQ 180
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECK 1171
+I FG+ CK ++P C CPL C+
Sbjct: 181 IIFFGRYHCKSQNPGCHICPLFDRCR 206
>gi|254561880|ref|YP_003068975.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
gi|254269158|emb|CAX25124.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
Length = 254
Score = 53.9 bits (128), Expect = 6e-04, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A EI I + A RIK L + E G++ L++L ++ D+ + +
Sbjct: 86 DWTEIGAASVEEIETTIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVDEARGW 145
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A R G + + G H L + P
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGAKVDVGPSHAVLRAQLP 205
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D W + LY+ H ++ G+ C RSP C C L C
Sbjct: 206 --DD-----W------SAQKLYDNHEVLMLHGQRVCFHRSPACDRCVLLDIC 244
>gi|302921021|ref|XP_003053199.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
gi|256734139|gb|EEU47486.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
Length = 485
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 75/218 (34%), Gaps = 64/218 (29%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SVDW VR A + I +AIK G + IK L + E
Sbjct: 261 SVDWNKVRTAPLTTIVEAIKTGGLAQVKGKDIKAILELVHEENVKRRDAFIQERKSGKMS 320
Query: 1039 --------LHGSIDLEWLR------------NVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
G DLE L+ + PD+ + L G+G+K+ CV L
Sbjct: 321 GAFKADGKTQGQKDLEILKTEQDILSLDHIHGMHPDEAMQTLTKFPGIGVKTASCVILFC 380
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT 1138
LQ +F VD +V R+ L W+P + HL P K
Sbjct: 381 LQQPSFAVDTHVHRLTGWLKWMPPKATRDQTFSHLEVRIPNHLK---------------- 424
Query: 1139 LYELHYQMITFGK--IFCKKRSP------NCGACPLRG 1168
Y LH + G+ I C+ + N CPL G
Sbjct: 425 -YGLHKLFVQHGRNCIRCRANTSEGSEEWNNEECPLEG 461
>gi|46128543|ref|XP_388825.1| hypothetical protein FG08649.1 [Gibberella zeae PH-1]
Length = 486
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 77/216 (35%), Gaps = 64/216 (29%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SVDW VR A I ++IK G + IK L + E
Sbjct: 261 SVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKAILELVYEENTKRREAFLEEKSGGKAT 320
Query: 1039 --------LHGSIDLEWLR------------NVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
G DLE L+ + PD+ + L G+G+K+ CV L
Sbjct: 321 GITGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFC 380
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT 1138
LQ +F VD +V RI+ L W+P + HL E + D ++
Sbjct: 381 LQQPSFAVDTHVHRISGWLKWMPRKATRDQTFSHL--EVRIPDHLK-------------- 424
Query: 1139 LYELHYQMITFGK--IFCKKRSP------NCGACPL 1166
Y LH + G+ I C+ + N CPL
Sbjct: 425 -YGLHKLFVQHGRSCIRCRANTSEGSEEWNKSECPL 459
>gi|303246513|ref|ZP_07332792.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
gi|302492223|gb|EFL52098.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
Length = 216
Score = 53.9 bits (128), Expect = 6e-04, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYL 1060
EA+ E+A+ I+ G + A R++ L +V EL G D+ L + D +E L
Sbjct: 63 EALYALPVEELAELIRPAGYFRVKAARLRNLLALIVHELGG--DITALADGGLDAARERL 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L ++G+G ++ + + L L +F VD RI R P D L+E M
Sbjct: 121 LAVKGVGPETADSILLYGLSLPSFVVDAYTARICNRHALAP-----EDAGYEELREL-FM 174
Query: 1121 DKIQMYLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPL 1166
D + + LY E H ++ G +C+ R+P C +CPL
Sbjct: 175 DALP----------EDTALYNEFHALLVRVGNGWCRPRAPRCDSCPL 211
>gi|393796716|ref|ZP_10380080.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 175
Score = 53.9 bits (128), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ I+ ++ VP + E L+++ G+G K+ CV + + A PVD++V RI+
Sbjct: 51 RIIEVAKIINSKYKGKVPDNL--EKLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRIS 108
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V + P + L++ P +K +++ + +G+ C
Sbjct: 109 NRLGLVNTKT-PEETEQELMRIIP-----------------KKFWIDINDTFVMYGQNIC 150
Query: 1155 KKRSPNCGACPLRGECKHFASAVAS 1179
K SP C C ++ CK + + S
Sbjct: 151 KPISPMCNVCKIKNNCKFYKTKNVS 175
>gi|304314918|ref|YP_003850065.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
gi|302588377|gb|ADL58752.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
Length = 215
Score = 53.9 bits (128), Expect = 6e-04, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E V A ++ +++ G ++ A RI+E L+E +G PD + E LL
Sbjct: 61 EDVAYAPVEKLEQLVRKAGFYHVKARRIREVSRILLEEYGG--------RVPDDIDE-LL 111
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ CV + + PVD +V RI+ R+G V + P + +
Sbjct: 112 KLPGVGRKTANCVLVYAFNKPVVPVDTHVHRISNRIGLVNTRT-PEE-----------TE 159
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
++ M + PR K EL+ M+ FG+ C+ P CP+ EC ++ S
Sbjct: 160 RVLMEVIPR------KYWIELNDLMVQFGQDICRPVGPRHEECPIADECDYYKS 207
>gi|154302382|ref|XP_001551601.1| hypothetical protein BC1G_09975 [Botryotinia fuckeliana B05.10]
Length = 548
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 39/143 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD--- 1054
SV WEAV + + ++ +AI+ G + AG IK L + + + + L+ V D
Sbjct: 273 SVSWEAVLASSKEDVEEAIRSGGLAKVKAGYIKAILQVVFDKNTDLLEALLKGVETDVPV 332
Query: 1055 ----KVKE--------------------------------YLLDIEGLGLKSVECVRLLS 1078
KV E L+D+ G+G+K+ CV L
Sbjct: 333 PFVGKVLETKEQKEAEIKSLRENMLSLDYVHTLDKPAAMRVLMDLPGIGVKTAACVALFC 392
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVP 1101
L +F VD +V R + LGWVP
Sbjct: 393 LGRPSFAVDTHVWRHCMWLGWVP 415
>gi|325968642|ref|YP_004244834.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
gi|323707845|gb|ADY01332.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
Length = 230
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 975 QQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
Q WD++ + + S +K+ E + D + +A+ IK + A R+ +F
Sbjct: 53 QTRWDVVHEVLNRLRRLSLNKL-----EVIANTDPNYLAEVIKGVNYRFTKAQRLVKFAK 107
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+ + G L LR V+++LL+ EG+G ++ + + L +L P+ R+
Sbjct: 108 NVTMIGGLGKLR-LRG----DVRDFLLNQEGVGRETADSIMLFALNIPTMPISQYTKRVF 162
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RL L + L Y + + L PR D T +H +IT GK +C
Sbjct: 163 SRL-----------LGLKLGDNYDMWKEFLEGLLPR----DLYTYKLIHASIITIGKKYC 207
Query: 1155 KKRSPNCGACPLRGECKH 1172
P C CPLR C +
Sbjct: 208 LPTDPLCNKCPLRDVCLY 225
>gi|347828944|emb|CCD44641.1| hypothetical protein [Botryotinia fuckeliana]
Length = 548
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 39/143 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD--- 1054
SV WEAV + + ++ +AI+ G + AG IK L + + + + L+ V D
Sbjct: 273 SVSWEAVLASSKEDVEEAIRSGGLAKVKAGYIKAILQVVFDKNTDLLETLLKGVETDVPV 332
Query: 1055 ----KVKE--------------------------------YLLDIEGLGLKSVECVRLLS 1078
KV E L+D+ G+G+K+ CV L
Sbjct: 333 PFVGKVLETKEQKEAEIKSLRENMLSLDYVHTLDKPAAMRVLMDLPGIGVKTAACVALFC 392
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVP 1101
L +F VD +V R + LGWVP
Sbjct: 393 LGRPSFAVDTHVWRHCMWLGWVP 415
>gi|393201411|ref|YP_006463253.1| EndoIII-related endonuclease [Solibacillus silvestris StLB046]
gi|406665654|ref|ZP_11073426.1| Endonuclease III [Bacillus isronensis B3W22]
gi|327440742|dbj|BAK17107.1| predicted EndoIII-related endonuclease [Solibacillus silvestris
StLB046]
gi|405386519|gb|EKB45946.1| Endonuclease III [Bacillus isronensis B3W22]
Length = 219
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A I+ RL+ +G VP + E L+ + G+G K+
Sbjct: 72 ELQNDIRSIGLYRNKAKNIQLLCARLINEYGG-------EVPASR--EELVTLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ E +M K + W R
Sbjct: 123 ANVVLSVAFDIPAMAVDTHVERVSKRLGLCRWKDSVLEV------EETIMKKTPIERWSR 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+Q+I FG+ CK ++P CG CPL +C+
Sbjct: 177 A-----------HHQIIFFGRYHCKAQNPGCGTCPLLDDCR 206
>gi|408388582|gb|EKJ68263.1| hypothetical protein FPSE_11566 [Fusarium pseudograminearum CS3096]
Length = 486
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 77/216 (35%), Gaps = 64/216 (29%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SVDW VR A I ++IK G + IK L + E
Sbjct: 261 SVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKTILELVYEENTKRREAFLEEKSGGKAT 320
Query: 1039 --------LHGSIDLEWLR------------NVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
G DLE L+ + PD+ + L G+G+K+ CV L
Sbjct: 321 GLTGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFC 380
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKT 1138
LQ +F VD +V RI+ L W+P + HL E + D ++
Sbjct: 381 LQQPSFAVDTHVHRISGWLKWMPPKATRDQTFSHL--EVRIPDHLK-------------- 424
Query: 1139 LYELHYQMITFGK--IFCKKRSP------NCGACPL 1166
Y LH + G+ I C+ + N CPL
Sbjct: 425 -YGLHKLFVQHGRSCIRCRANTSEGSEEWNKSECPL 459
>gi|154249096|ref|YP_001409921.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153032|gb|ABS60264.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 221
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
AG +E R++ + I LE V P+K++E LL++ G+G K+ V +S A
Sbjct: 86 AGLYREKAERII-IVSKILLEKYDGVVPNKLEE-LLELPGVGRKTANIVLHVSFDQAALA 143
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VD +V RI+ RLGWV + P L K +M LW ++
Sbjct: 144 VDTHVHRISNRLGWVKTKT-PEQTEEELKK---IMSP---QLWG-----------PINGS 185
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
M+ FGK CK SP C C L C F + S
Sbjct: 186 MVEFGKNICKPISPRCEQCFLTECCDFFKNKYNS 219
>gi|312792801|ref|YP_004025724.1| hhh-gpd family protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179941|gb|ADQ40111.1| HhH-GPD family protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 232
Score = 53.9 bits (128), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + ++A+ +K G N R+KEF N L + S DLE L + +++ LL
Sbjct: 74 EGILQTSDEKLAELVKPAGYYNQKTKRLKEFCNFLKKEFNS-DLEKLFALDISSLRQVLL 132
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + + + Y +
Sbjct: 133 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI----------SYNDLQ 182
Query: 1122 KIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I M L P+ + + E H ++ K CK + P C C LR C +F
Sbjct: 183 AIIMANLTPQTKFFN-----EFHALIVKHCKEICKSKKPICNKCCLRLICNYF 230
>gi|383785899|ref|YP_005470468.1| DNA-(apurinic or apyrimidinic site) lyase [Fervidobacterium
pennivorans DSM 9078]
gi|383108746|gb|AFG34349.1| endonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 220
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
+G KE R++ + I LE PD ++E LL + G+G K+ V +S A
Sbjct: 89 SGLYKEKAERIIAV-SKIILEKYGGRVPDNLEE-LLSLPGVGRKTANIVLHVSFGQQALA 146
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VD +V RI+ RLGWV + P L K LD ++
Sbjct: 147 VDTHVHRISNRLGWVNTKT-PEQTEEELKK-----------------ILDPNLWGPVNGS 188
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHF 1173
M+ FGK C+ SP C C L CK+F
Sbjct: 189 MVEFGKQICRPISPKCEECFLTACCKYF 216
>gi|325958693|ref|YP_004290159.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
gi|325330125|gb|ADZ09187.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
Length = 216
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + A E+ IK+ G ++ A R++E ++R+ I ++ VP D + LL
Sbjct: 63 EEIANAPTEEVEKLIKKSGFYHVKASRVRE-VSRI------IHEDYNDTVPEDMAE--LL 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ CV + A PVDV+V RI+ R+G V P + L+K
Sbjct: 114 SLPGVGRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVN-TGTPDETEEKLMK------ 166
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ P+ +L L+ + FG+ CK P CP+ C ++
Sbjct: 167 -----IVPKKFWLPLNDLF------VQFGQTICKPIGPKHEICPIAEYCDYY 207
>gi|302871235|ref|YP_003839871.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574094|gb|ADL41885.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
Length = 234
Score = 53.9 bits (128), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + ++A+ IK G N A R+KEF N L S DLE L + +++ LL
Sbjct: 75 EGILQTPDEKLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDILSLRKILL 133
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + + + Y +
Sbjct: 134 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI----------SYSDLQ 183
Query: 1122 KIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I M L P+ + + E H ++ K CK + P C C LR C +F
Sbjct: 184 AIIMAKLTPQTKFFN-----EFHALIVKHCKEICKSKKPICNKCCLRLICNYF 231
>gi|156055880|ref|XP_001593864.1| hypothetical protein SS1G_05292 [Sclerotinia sclerotiorum 1980]
gi|154703076|gb|EDO02815.1| hypothetical protein SS1G_05292 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 551
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 39/143 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR-------LVEL----------- 1039
SV WEAV A E ++ AIK G N+ IK+ L + L+E+
Sbjct: 273 SVSWEAVFAAPEEDVVKAIKSGGLANVKGSNIKKILKKVYDQNTELLEILLKEVDTDVSV 332
Query: 1040 ---------------------HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
+ ++++ + + L+D+ G+G+K+ CV L
Sbjct: 333 PFIGKVLETKEQKEAEIKSLGENMLSIDYIHALDKPAAMDVLMDLPGIGVKTAACVALFC 392
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVP 1101
L +F VD +V R LGWVP
Sbjct: 393 LGRPSFAVDTHVWRHCKWLGWVP 415
>gi|169827624|ref|YP_001697782.1| endonuclease III [Lysinibacillus sphaericus C3-41]
gi|168992112|gb|ACA39652.1| Probable endonuclease III [Lysinibacillus sphaericus C3-41]
Length = 220
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V ++ A VD +V R++ RLG + ++ ++K+
Sbjct: 109 REALVTLPGVGRKTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKDSVLEVEETIMKK 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P MDK W + H+Q+I FG+ CK ++P C ACPL +C+
Sbjct: 169 TP-MDK-----WSKT-----------HHQLIFFGRYHCKAQNPGCHACPLLSDCR 206
>gi|156041124|ref|XP_001587548.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980]
gi|154695924|gb|EDN95662.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 347
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH----------------GS 1042
VDWEAVR A ++ +AIK G N+ + K L+ + E +
Sbjct: 213 VDWEAVRLAPLEKLYEAIKTEGMGNVKSRSCKAILDMVHEENVIRRQRGKVATNSRGIDL 272
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVR 1096
+ LE +R++ D+ + + G+G K+ C+ + +QH AF VD +V +I+ R
Sbjct: 273 LSLEHMRSLSKDEAFDKFITFPGVGPKTAACIISICMQHNAFAVDTHVYQISDR 326
>gi|116193597|ref|XP_001222611.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
gi|88182429|gb|EAQ89897.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
Length = 549
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 53/215 (24%)
Query: 972 NTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKE 1031
NT Q+ L R Y G+ + S++WE VR + +E+ IK G + IK
Sbjct: 295 NTAIQN---LVRYYGRGQVGT--SAGSINWEKVRLSTHAELTQVIKVAGNGPNRSQHIKR 349
Query: 1032 FLNRLVE----------------------------LHGSIDLEWLRNVPPDKVKEYLLDI 1063
L+ + E LH + L+ +R + D+ L
Sbjct: 350 ILDMVHEENVQRAKMQRPETEAGQTQAVAEAGKTALH-LLSLDHMRAMSKDEAMAKFLSY 408
Query: 1064 EGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G+K+ CV L LQ F VD +V + LGWVP + P + H ++ V D +
Sbjct: 409 PGIGIKTAACVTLFCLQKPCFAVDTHVHKFCRWLGWVPDKADPDNCFRH--GDFMVPDHL 466
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIF--CKK 1156
+ Y LH I G+ CKK
Sbjct: 467 K---------------YGLHQLFIRHGQTCFKCKK 486
>gi|448488148|ref|ZP_21607078.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
gi|445696410|gb|ELZ48499.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
Length = 233
Score = 53.9 bits (128), Expect = 8e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVP 1052
D+ D D+ AV AD E+ + I+ G + A RI+ L + E G+ L +L +P
Sbjct: 69 DRYD--DFAAVEAADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
D+ K +L +I+G+G K+ V VD +V R++ R G VP H
Sbjct: 127 TDEAKGWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEV 186
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
L P D+ T Y LH +I G+ C R +C
Sbjct: 187 LDGRIP----------------DELT-YPLHVLLIRHGRERCSARGADC 218
>gi|423083243|ref|ZP_17071818.1| endonuclease III [Clostridium difficile 002-P50-2011]
gi|423086615|ref|ZP_17075014.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546324|gb|EHJ28255.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546344|gb|EHJ28274.1| endonuclease III [Clostridium difficile 002-P50-2011]
Length = 350
Score = 53.9 bits (128), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 208 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 257
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 258 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 310
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 311 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|255654585|ref|ZP_05399994.1| endonuclease III [Clostridium difficile QCD-23m63]
gi|296449359|ref|ZP_06891141.1| endonuclease III [Clostridium difficile NAP08]
gi|296880707|ref|ZP_06904659.1| endonuclease III [Clostridium difficile NAP07]
gi|296261829|gb|EFH08642.1| endonuclease III [Clostridium difficile NAP08]
gi|296428280|gb|EFH14175.1| endonuclease III [Clostridium difficile NAP07]
Length = 285
Score = 53.9 bits (128), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 143 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 192
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 193 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 245
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 246 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 278
>gi|146304857|ref|YP_001192173.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula DSM
5348]
gi|145703107|gb|ABP96249.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula DSM
5348]
Length = 230
Score = 53.9 bits (128), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 988 GEERSHDKMDS---VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
G +++++++D + E + AD I I++ G N IKE +++ +G D
Sbjct: 52 GAKKAYEELDKEVGITAEGLSRADPEVIKRCIRKVGLHNNKTKVIKEVSTKILNEYGG-D 110
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
+ + ++ K +E L+++ G+G K+ + + + + FP+D ++ RI+ RLG
Sbjct: 111 INKVLDLGLPKAREKLVELPGVGKKTADVLLITCRDYPVFPIDTHIFRISKRLG------ 164
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ G+ DK+ + W + H +IT G+ CK P C C
Sbjct: 165 IDGN-----------YDKVSSF-WRE---VSDNLRLRAHLLLITHGRATCKAIKPKCDTC 209
Query: 1165 PLRGECKHFA 1174
L C+++A
Sbjct: 210 VLNDCCEYYA 219
>gi|451343149|ref|ZP_21912225.1| endonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338145|gb|EMD17297.1| endonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 222
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 1006 CADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
CAD +++ IK G A I+ L+ + + VP V E L+D+ G
Sbjct: 74 CADINDLQRYIKRIGLYRNKAKNIQAMCQVLINDYQGV-------VPS--VMEELIDLPG 124
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ V + VD +V RIA RL + L+ G + L K+ P
Sbjct: 125 VGRKTANVVLADAFNIPGIAVDTHVTRIAKRLKFCYLKDNVGTIEKKLRKKIP------- 177
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
Q + H+QMI FG+ CK +P+C CPL C+
Sbjct: 178 ----------QDRWIKSHHQMIFFGRYHCKAINPHCYECPLIDICR 213
>gi|90961668|ref|YP_535584.1| endonuclease III [Lactobacillus salivarius UCC118]
gi|417788262|ref|ZP_12435945.1| endonuclease III [Lactobacillus salivarius NIAS840]
gi|417810344|ref|ZP_12457023.1| endonuclease III [Lactobacillus salivarius GJ-24]
gi|90820862|gb|ABD99501.1| Endonuclease III [Lactobacillus salivarius UCC118]
gi|334308439|gb|EGL99425.1| endonuclease III [Lactobacillus salivarius NIAS840]
gi|335349140|gb|EGM50640.1| endonuclease III [Lactobacillus salivarius GJ-24]
Length = 213
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+A+ IK G A + E LVE S+ VP K + L+ + G+
Sbjct: 68 ADPKEVAEYIKTIGLYKNKAKYLVECSKMLVENFNSV-------VP--KTHKELMSLSGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + V AF VD +V RI+ RL VP + L+ + P D I+
Sbjct: 119 GRKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETEKILMSKVPKEDWIKS- 177
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H++MI +G+ C R+P C CPL C+
Sbjct: 178 ----------------HHRMIFWGRYQCMARAPKCETCPLLEICQ 206
>gi|374636071|ref|ZP_09707655.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
gi|373560329|gb|EHP86596.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
Length = 218
Score = 53.5 bits (127), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K + +D + D ++ IK G NI A R+K +VE + + + ++ +
Sbjct: 52 KENLIDEIKILNTDIEKLKKLIKPAGFYNIKAERLKNITKFIVENYKNTENLAKLSIKLE 111
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+++ +L+++G+G ++ + + L +L F +D RI R L+ + G
Sbjct: 112 DLRKEILNVKGIGKETADSILLYALDREIFVIDAYTRRIFSR-----LRIIEGG------ 160
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+EY + I P+ D K E H ++ GK +CKK++P C CPL C
Sbjct: 161 EEYDEIRGIFEKNLPK----DLKIYKEYHALIVELGKHYCKKKNPVCEKCPLHNLC 212
>gi|342873258|gb|EGU75465.1| hypothetical protein FOXB_14013 [Fusarium oxysporum Fo5176]
Length = 552
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 39/143 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
SVDW VR A I ++IK G + IK L + E
Sbjct: 326 SVDWNKVRVAPLPTIVESIKTGGLAQVKGKDIKAILELVHEENTKRREAFMQEKKGGNLS 385
Query: 1039 --------LHGSIDLEWLRN------------VPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
G DLE L+ + PD+ + L G+G+K+ CV L
Sbjct: 386 GITGADNKTQGQKDLEILKTEQDILSLDHIHGMAPDEAMQTLTKFPGIGVKTASCVILFC 445
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVP 1101
LQ +F VD +V RI+ L W+P
Sbjct: 446 LQQPSFAVDTHVHRISGWLKWIP 468
>gi|424811992|ref|ZP_18237232.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756214|gb|EGQ39797.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 219
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKEY 1059
W V A E E+ D ++ G A RI++ L + E G +++L + + KE+
Sbjct: 61 WREVEEAPEGELTDVVRVAGLGPTKAERIQKALELVREETGGDYSVDFLDEMSTEDAKEW 120
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ V + FPVD +V R++ R G VP H + E V
Sbjct: 121 LESLPGVGPKTAAIVLCFHMGRAVFPVDTHVHRLSKRWGIVPEN--TSRKKTHRIMERKV 178
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN 1160
D+++ Y +H MI G+ C+ R+P
Sbjct: 179 PDELK---------------YTMHILMIRHGRNDCEARNPT 204
>gi|337283826|ref|YP_004623300.1| endonuclease III [Pyrococcus yayanosii CH1]
gi|334899760|gb|AEH24028.1| endonuclease III [Pyrococcus yayanosii CH1]
Length = 234
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 22/164 (13%)
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNR---LVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
++IA+A E+ Q+ + + ++ + ++ +VE+ I LE PD ++E L+ + G+
Sbjct: 81 NDIANASVEKMQEFLRSLKVGLWRSKGRWIVEV-SRIILERYDGRVPDTLEE-LMKLPGI 138
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K V A PVD +V R++ RLG PL+ P +K++ Y
Sbjct: 139 GRKCANIVLAYGFGKPAIPVDTHVNRVSKRLGLAPLEASP--------------EKVEEY 184
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L ++ ++ LY +++ M+ GK C+ P C CP+R C
Sbjct: 185 L--KVLIPKEEWLY-VNHAMVDHGKKVCRPIKPKCNECPVRNLC 225
>gi|430750009|ref|YP_007212917.1| endonuclease III [Thermobacillus composti KWC4]
gi|430733974|gb|AGA57919.1| endonuclease III [Thermobacillus composti KWC4]
Length = 215
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I++ L+E HG VP D E L+++ G+G K+
Sbjct: 71 ELEQDIRRIGLYRNKAANIQKLCRMLIEKHGG-------EVPRDY--ESLVELPGVGRKT 121
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + A VD +V R++ RLG P D + + +K M L PR
Sbjct: 122 ANVVISNAFGVPAIAVDTHVERVSKRLGIAK----PDDSVLEV-------EKKLMRLVPR 170
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
D+ T+ H+++I FG+ CK + PNC CPL CK
Sbjct: 171 ----DEWTIT--HHRLIFFGRYHCKAQRPNCPECPLLDLCK 205
>gi|354603229|ref|ZP_09021228.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
gi|353349106|gb|EHB93372.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
Length = 242
Score = 53.5 bits (127), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI---DLEWLRNVPPDKVKE 1058
+A+ AD EI I+ N A + L E G D+E L+ +P
Sbjct: 65 QAMADADPEEIYPYIRSISYPNNKAKNLSGMARMLCEEFGGAVPEDIEQLQRLP------ 118
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
G+G K+ V +++ A PVD +V R+A RLG P + L + +P
Sbjct: 119 ------GVGRKTANVVGIVAFGKRAMPVDTHVFRVADRLGLSTGAKTPLQTEMQLTEGFP 172
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+ L H+ +I G+ C R P+C AC L C+++A+
Sbjct: 173 -----------------PEVLPLAHHWLILHGRYVCTARKPHCEACGLTPWCRYYATQQK 215
Query: 1179 SA 1180
+A
Sbjct: 216 TA 217
>gi|254974165|ref|ZP_05270637.1| endonuclease III [Clostridium difficile QCD-66c26]
gi|255091566|ref|ZP_05321044.1| endonuclease III [Clostridium difficile CIP 107932]
gi|255313292|ref|ZP_05354875.1| endonuclease III [Clostridium difficile QCD-76w55]
gi|255515983|ref|ZP_05383659.1| endonuclease III [Clostridium difficile QCD-97b34]
gi|255649074|ref|ZP_05395976.1| endonuclease III [Clostridium difficile QCD-37x79]
gi|306519188|ref|ZP_07405535.1| endonuclease III [Clostridium difficile QCD-32g58]
gi|384359832|ref|YP_006197684.1| endonuclease III [Clostridium difficile BI1]
Length = 350
Score = 53.5 bits (127), Expect = 9e-04, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 208 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 257
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 258 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 310
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 311 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|319790406|ref|YP_004152039.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
gi|317114908|gb|ADU97398.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
Length = 221
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ DE E+ + IK G A +KE L+R V G I E L+ P ++ LL
Sbjct: 62 EALSSTDEGELQNLIKPAGFFRQKARYLKE-LSRFVVREGGI--EGLKAQPLKVLRPKLL 118
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK-EYPVM 1120
+++G+G ++ + + L +L +F VD R+ RLG + + + + L++ E P
Sbjct: 119 NVKGIGPETADSILLYALDKPSFVVDKYTKRLLYRLGVLEGESVSYNRVKTLVEGEIPPT 178
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ K ELH ++ K +CK R PNC CPLR C
Sbjct: 179 EE------------HLKEYKELHALIVELCKRYCKTR-PNCRECPLRELC 215
>gi|312899629|ref|ZP_07758955.1| endonuclease III [Enterococcus faecalis TX0470]
gi|311293308|gb|EFQ71864.1| endonuclease III [Enterococcus faecalis TX0470]
Length = 215
Score = 53.5 bits (127), Expect = 0.001, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI D IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIDKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|309775704|ref|ZP_07670702.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916543|gb|EFP62285.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 215
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
L+ V P+ +K+ L + G+G K+ VR + + VD +V RI+ RLG +Q
Sbjct: 94 LDSFDGVVPESMKD-LTSLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQD 152
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
+ E + K++ W R H+ I FG+ FC R+P C C
Sbjct: 153 SVE------VVEQKLKRKLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEEC 195
Query: 1165 PLRGECK 1171
P R CK
Sbjct: 196 PFREFCK 202
>gi|423091165|ref|ZP_17079423.1| endonuclease III [Clostridium difficile 70-100-2010]
gi|357555447|gb|EHJ37097.1| endonuclease III [Clostridium difficile 70-100-2010]
Length = 350
Score = 53.1 bits (126), Expect = 0.001, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 208 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 257
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 258 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMETIPKERWS 310
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 311 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|302410315|ref|XP_003002991.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
gi|261358015|gb|EEY20443.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
Length = 327
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 1014 DAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVEC 1073
+AIK G + + I L + +G+ L+ + + ++ L+ +G+G K+ C
Sbjct: 161 EAIKCGGLAAVKSKVILGILEQAKARYGAYSLDHMFDKTDEEAMRELIGFQGVGPKTASC 220
Query: 1074 VRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCY 1133
V L L+ +F VD +V RI LGW P + + HL P DK
Sbjct: 221 VLLFCLRRESFAVDTHVWRITGLLGWRPKTASRDETYAHLDVRIPDEDK----------- 269
Query: 1134 LDQKTLYELHYQMITFGKI 1152
Y LH ++ GK+
Sbjct: 270 ------YGLHILLVKHGKV 282
>gi|374300499|ref|YP_005052138.1| HhH-GPD family protein [Desulfovibrio africanus str. Walvis Bay]
gi|332553435|gb|EGJ50479.1| HhH-GPD family protein [Desulfovibrio africanus str. Walvis Bay]
Length = 227
Score = 53.1 bits (126), Expect = 0.001, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 991 RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL-----HGSIDL 1045
R+HD + A+ E+ +A+AI+ G I AGR+ L L HG DL
Sbjct: 55 RAHDLLTPA---AMLDISEAALAEAIRPAGYYRIKAGRLANLLRFLRAEAEEFGHGEADL 111
Query: 1046 E-----WLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
L+ +++E LL + G+G ++ + + L +L F VD RIA+R G
Sbjct: 112 HDPALPMLQGRNARELRERLLTVRGIGPETADSILLYALGLPIFVVDAYTARIALRHGLA 171
Query: 1101 PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN 1160
D H L+E ++ D E H ++ G +C+K+ P
Sbjct: 172 -----FEDAGYHELQE----------IFTDALPEDAALFNEYHALLVRVGHEWCRKKEPR 216
Query: 1161 CGACPL 1166
C CPL
Sbjct: 217 CRDCPL 222
>gi|336436197|ref|ZP_08615910.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008237|gb|EGN38256.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 211
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG Q P + L+KE
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYHDASVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
P D LY + Q+ITFG+ C RSP C C LR CK + ++
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARSPKCEECFLRAYCKTISKSI 210
>gi|218281634|ref|ZP_03488042.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
gi|218217269|gb|EEC90807.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
Length = 208
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
A SE+ IK G A I LVE HG + P K+ L+ + G
Sbjct: 64 ATVSELEPYIKRIGLYRNKARSISNLSKDLVERYHGQV---------PYTYKD-LMSLAG 113
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ VR ++ +F VD +V R++ RLG L K ++K++
Sbjct: 114 VGRKTANVVRSVAFDIPSFAVDTHVNRVSKRLG--------------LAKYNDSVEKVEE 159
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L ++ D+ + H+ I FG+ C R+P C CP + CK
Sbjct: 160 KLKRKI---DRSRWNQGHHDFIFFGRYLCHSRNPECERCPFKSFCK 202
>gi|325107269|ref|YP_004268337.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces brasiliensis
DSM 5305]
gi|324967537|gb|ADY58315.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces brasiliensis
DSM 5305]
Length = 231
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
++EIA AIK G N A I F L+ E+ VP + + L+ + G+G
Sbjct: 86 QAEIAAAIKPCGLYNSKAKNIHRFCEVLLS-------EFDGRVP--RTRAELMSLPGIGR 136
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K + V+ + VD +V R+ R G L D L
Sbjct: 137 KCADIVQQFAFDIDVIAVDTHVHRVCNRTG---------------LAVGKTADATARSLE 181
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
R + TL+E H+ +I FGK C R+P C C L C+++ S
Sbjct: 182 ERA---PEWTLHEGHFWLIQFGKQICHARTPRCENCSLNHLCRYYRS 225
>gi|452847106|gb|EME49038.1| hypothetical protein DOTSEDRAFT_49374 [Dothistroma septosporum NZE10]
Length = 497
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 44/195 (22%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS--------------- 1042
SVDW+ VR A + E+ AI+ G + + I+ L E + +
Sbjct: 238 SVDWDVVRRAPQKEVFKAIERGGLAQVKSKDIQAILQIAYEENQARKAAFTDPSDNPAGA 297
Query: 1043 -------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA 1083
I L+ L + D +L + G+G K+ CV L LQ +
Sbjct: 298 ENEPEKEKQNEVTKAKQNIISLDHLHLLSTDDAINKMLSLPGIGPKTASCVALFCLQRPS 357
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
F VD +V R+ LGWVP G + Y D + + Y LH
Sbjct: 358 FAVDTHVFRLCQYLGWVPKSTRKGQSKVDRNTTYSHCD----------VRIPDELKYPLH 407
Query: 1144 YQMITFGKIFCKKRS 1158
+I GK+ + R+
Sbjct: 408 QLLIKHGKVCPRCRA 422
>gi|376295286|ref|YP_005166516.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
gi|323457847|gb|EGB13712.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
Length = 217
Score = 53.1 bits (126), Expect = 0.001, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+A+ I+ G NI A RI FL L + DL L++ +++ +L I G+G ++
Sbjct: 73 LAELIRPAGYYNIKAKRIHNFLQFLKD-EAEFDLLALKDRELAELRPKVLSINGIGPETG 131
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVR--LGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+C+ L +L F VD RI R L W + +Y + I M P
Sbjct: 132 DCILLYALDFPTFVVDAYTARILGRHGLAWEDI-------------DYHGLQSIFMDALP 178
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
D E H ++ G +C+K++ C ACPL+
Sbjct: 179 E----DVALYNEYHALIVRVGANWCRKKAGLCDACPLQ 212
>gi|300088667|ref|YP_003759189.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528400|gb|ADJ26868.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 224
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+A I+ G N A ++K + L D+E L++ P + + LL + G+G ++
Sbjct: 76 ELAPVIRSSGYYNAKASKLKALADWLAGYDD--DIESLKDRDPAEFRRELLAVHGVGPET 133
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L +L F +D R+ RLG VP P D + W R
Sbjct: 134 ADSILLYALDVPVFVIDAYTRRLFSRLGIVP----PRDTYDE---------------WQR 174
Query: 1131 LCYLD---QKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
L + Q L+ E H ++ K C+ R P+C C L GEC++
Sbjct: 175 LFETNLEQQAGLFNEYHALIVRHAKEVCRSR-PDCAECCLAGECRYL 220
>gi|416014967|ref|ZP_11562684.1| endonuclease III [Pseudomonas syringae pv. glycinea str. B076]
gi|320325635|gb|EFW81697.1| endonuclease III [Pseudomonas syringae pv. glycinea str. B076]
Length = 212
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH S VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVV-EVEKQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C +
Sbjct: 169 ----ENYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|346321129|gb|EGX90729.1| HhH-GPD family base excision DNA repair protein [Cordyceps militaris
CM01]
Length = 330
Score = 53.1 bits (126), Expect = 0.001, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 31/192 (16%)
Query: 986 STGEERSHDKM--DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH--- 1040
ST +RS D S WEA+ + ++ AI+ G + A + + +N L +H
Sbjct: 155 STRAKRSMDAAYGRSDAWEAIAAGGQPQLQAAIRCGG---LAATKSRVIVNLLAAVHSKY 211
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
G L+ L + + E LL G+G K+ CV L LQ +F VD +V RIA LGW
Sbjct: 212 GMYSLDHLFHASDTEAMEELLAFPGVGPKTASCVLLFCLQRPSFAVDTHVYRIAGILGWR 271
Query: 1101 PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN 1160
P + HL P D ++ Y LH +I G+ C+
Sbjct: 272 PPEATREQAQAHLDASIP--DALK---------------YPLHVLLIAHGRT-CRA---- 309
Query: 1161 CGACPLRGE-CK 1171
CGA GE CK
Sbjct: 310 CGAKAAAGESCK 321
>gi|257486632|ref|ZP_05640673.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422680768|ref|ZP_16739039.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331010113|gb|EGH90169.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 212
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH S VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R G P K ++K M P+
Sbjct: 123 NVVLNTAFRQVAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKQLMKFVPKN 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C +
Sbjct: 171 YLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|212526396|ref|XP_002143355.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
gi|210072753|gb|EEA26840.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
Length = 449
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL------------------ 1039
SVDW AVR A +E+ +A+K G + IK LN + E
Sbjct: 234 SVDWNAVRVAPINEVFEAMKSGGLATTKSKYIKGILNMVYEENLARKAAHLKSEEEPGKP 293
Query: 1040 ------HGS---------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 1078
H S + L+W+ + ++ L+ G+G K+ CV L
Sbjct: 294 GPVGAEHESKAQKEVEIALTDENVLSLDWIHALDKEEAMLELIKYPGIGPKTAACVVLFC 353
Query: 1079 LQHIAFPVDVNVGRIAVRLGWVP 1101
LQ F VD ++ RI LGW+P
Sbjct: 354 LQRPCFAVDTHIFRICKWLGWLP 376
>gi|23098497|ref|NP_691963.1| DNA-lyase [Oceanobacillus iheyensis HTE831]
gi|22776723|dbj|BAC12998.1| DNA-(apurinic or apyrimidinic site) lyase [Oceanobacillus iheyensis
HTE831]
Length = 222
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
+E+E+A+ I+ G I A RIK F+ + + D+ ++ +P DK++ LL I+G+G
Sbjct: 67 EENELAEKIRPSGFYRIKAARIKAFITWFRKY--NYDVSIVQQIPHDKLRSELLSIKGIG 124
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + + + + AF D RI R+G +++ Y + K+
Sbjct: 125 DETADVMLVYAFKKQAFIADQYANRIFNRIG------------LNVPSTYRSLQKVVERD 172
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P L Q E H ++ KI CK + P C CP++ C+
Sbjct: 173 LPNDSLLYQ----EYHALLVEHAKIHCKVK-PICNTCPVQTICE 211
>gi|71735109|ref|YP_273633.1| endonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|289626585|ref|ZP_06459539.1| endonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289647569|ref|ZP_06478912.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
gi|416028815|ref|ZP_11571704.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|422404345|ref|ZP_16481398.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|422582407|ref|ZP_16657543.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422594538|ref|ZP_16668828.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
gi|71555662|gb|AAZ34873.1| endonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298156815|gb|EFH97906.1| Endonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|320327082|gb|EFW83096.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330867250|gb|EGH01959.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330876898|gb|EGH11047.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330984845|gb|EGH82948.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 212
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH S VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R G P K ++K M P+
Sbjct: 123 NVVLNTAFRQVAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKQLMKFVPKN 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C +
Sbjct: 171 YLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|399519845|ref|ZP_10760636.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112242|emb|CCH37195.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 212
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVV-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C R P CGAC + C++ A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|317148991|ref|XP_003190266.1| HhH-GPD family base excision DNA repair protein [Aspergillus oryzae
RIB40]
Length = 457
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 35/139 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN---------RLVELHGS------ 1042
SV+W+AVR A ++ +AIK G ++ + +K L+ R + + G
Sbjct: 229 SVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPPD 288
Query: 1043 --------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
+ L L + ++V E L+ G+G K+ CV L LQ
Sbjct: 289 LMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRP 348
Query: 1083 AFPVDVNVGRIAVRLGWVP 1101
F VD ++ RI LGWVP
Sbjct: 349 CFAVDTHIFRICKWLGWVP 367
>gi|46580743|ref|YP_011551.1| HhH-GPD family DNA repair protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601969|ref|YP_966369.1| HhH-GPD family protein [Desulfovibrio vulgaris DP4]
gi|387154013|ref|YP_005702949.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
gi|46450163|gb|AAS96811.1| DNA repair protein, HhH-GPD family [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562198|gb|ABM27942.1| DNA-3-methyladenine glycosylase III [Desulfovibrio vulgaris DP4]
gi|311234457|gb|ADP87311.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
Length = 226
Score = 53.1 bits (126), Expect = 0.001, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
D ++E LL ++G+G ++ + + L + H +F VD RI R G LP D+H
Sbjct: 120 DALRERLLSVKGIGPETADSILLYAFGHPSFVVDAYTRRILSRHGL-----LPEDVHYDE 174
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPL 1166
++++ MD + LY E H ++ K +C K P+C ACPL
Sbjct: 175 MRDF-FMDVLD----------PDPVLYNEFHALIVRVAKGWCHKSRPDCAACPL 217
>gi|116748504|ref|YP_845191.1| endonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|116697568|gb|ABK16756.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Syntrophobacter fumaroxidans MPOB]
Length = 227
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
+K G A IKE L E HG +PP+ + L+ + G+G K+ +
Sbjct: 90 VKSTGFYRNKARNIKEACRVLAEEHGG-------EIPPNL--DILVKLPGIGRKTANVIL 140
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
+ VD +VGR++ RLG + P + E +M+ I W + C+
Sbjct: 141 GNAFGIPGIVVDTHVGRVSERLGLTS-EKDPEKI------ERDLMEIIPREKWIKFCH-- 191
Query: 1136 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
Q+I G+ C+ R P G CPLR C H A+
Sbjct: 192 ---------QLIGLGREICQARKPKTGVCPLRPHCDHAAA 222
>gi|330834042|ref|YP_004408770.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
gi|329566181|gb|AEB94286.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
Length = 224
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD I IK G N + I+E L R ++ D+ L +V P+ ++ L I+G+
Sbjct: 75 ADLEVIKFCIKSIGLYNNKSITIRE-LARFIQETYHGDINKLLDVDPELARKELTRIKGI 133
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+V+ V L + FPVD ++ RI+ RLG + Y V+ +
Sbjct: 134 GNKTVDVVLLTCKGYKTFPVDTHIFRISKRLG--------------IKGNYKVVSE---- 175
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
W Y TL H +IT G+ CK +P C +C + C+++
Sbjct: 176 FWKNSVY---DTL-NAHLILITHGRKTCKAINPKCESCMINDCCRYY 218
>gi|210623502|ref|ZP_03293847.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
gi|210153560|gb|EEA84566.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
Length = 213
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E EI + IK G A +IK + I + PD ++E L+ + G+G
Sbjct: 71 EEEIGEMIKTCGLYKSKAKKIK--------MTSEILYNDYNSEVPDSLEE-LIKLPGVGR 121
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V + H A PVD +V RI R+G V P L+K P
Sbjct: 122 KTAGVVLSNAFGHPAIPVDTHVFRIVNRIGIVETST-PEKTEFELMKVLP---------- 170
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
++ + H+ I G+ CK R P C CP++ C +F V
Sbjct: 171 -------KERWSKAHHLFIFLGRRMCKARKPECTDCPIKKHCNYFLEIV 212
>gi|406893033|gb|EKD38207.1| hypothetical protein ACD_75C00822G0003 [uncultured bacterium]
Length = 223
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
+E++ EIA IK G N+ A R++ L+ ++ H L+ + +E L
Sbjct: 69 YESLSQCGVDEIAQYIKPSGYYNLKARRLRNLLD-MIGNHYDGQLDRFLDDDAQAAREML 127
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L ++G+G ++ + + L + H F VD+ R+ R V + +Y M
Sbjct: 128 LGVKGIGPETADSILLYACGHPIFVVDMYTHRVFSRHNMVDEE-----------TDYQTM 176
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRG 1168
+ M P D + E H ++ +CKK P C CPL+G
Sbjct: 177 QAVFMNQLP----CDAELFNEFHALVVRVAVTYCKKTIPLCDRCPLQG 220
>gi|452851214|ref|YP_007492898.1| conserved protein of unknown function [Desulfovibrio piezophilus]
gi|451894868|emb|CCH47747.1| conserved protein of unknown function [Desulfovibrio piezophilus]
Length = 217
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
+KM S+ +E E+++ I G NI RIK FL + + S D+E L +
Sbjct: 63 EKMYSLSFE--------ELSNLIHPAGYYNIKTRRIKNFL-EFLNIEASFDIENLASQEI 113
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
++ +L + G+G ++ + + L +LQ F VD RI R DL +H
Sbjct: 114 QDIRPKILGVNGIGPETADAILLYALQLPVFVVDAYTQRILHR----------HDL-VHD 162
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
+Y + + M P+ D E H ++ GK +CKK+ C +CPL+
Sbjct: 163 GIDYHELQALFMDSLPQ----DVSVYNEFHALIVRTGKQWCKKKVGVCDSCPLQ 212
>gi|433462947|ref|ZP_20420515.1| endonuclease III [Halobacillus sp. BAB-2008]
gi|432188084|gb|ELK45302.1| endonuclease III [Halobacillus sp. BAB-2008]
Length = 224
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ D IK G A IK+ L+ L++ VPP ++ L + G+G K+
Sbjct: 72 ELQDDIKRIGLFRNKAKNIKKLSETLI-------LQFDGQVPP--TQKELESLAGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ E +M KI W
Sbjct: 123 ANVVASVAFGEPAIAVDTHVERVSKRLGICRWKDSVLEV------EKTLMRKIPREEWS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ H++MI FG+ CK + PNC ACPL C+
Sbjct: 176 ----------DTHHRMIFFGRYHCKAQRPNCEACPLLDLCR 206
>gi|417960104|ref|ZP_12602758.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
gi|380331776|gb|EIA22753.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
Length = 209
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
DE E+ D IK G + + K +N L D E VP + ++ L+ + G+G
Sbjct: 67 DEKELKDKIKSIGLYRM---KSKNIINLCRILEERFDSE----VP--RTRDELITLPGVG 117
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ V AF VDV+V R++ R+G + P P + L+K I L
Sbjct: 118 RKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMKN------IDENL 170
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
W +C H+ +I G+ C R PNCG C + CK++
Sbjct: 171 WT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|420236383|ref|ZP_14740869.1| endonuclease III [Parascardovia denticolens IPLA 20019]
gi|391880559|gb|EIT89050.1| endonuclease III [Parascardovia denticolens IPLA 20019]
Length = 318
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 22/172 (12%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ A+ SE+A+ I G A N L+ G VP + E L
Sbjct: 166 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 216
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ + + FPVD +V R+ RL W D + + KE V
Sbjct: 217 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHWRSDWNKTKDDPVAIEKE--VTAA 274
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ W +L +++I FG+ C R P C CPLR C F
Sbjct: 275 FEPTEW-----------RDLSHRLIDFGRDTCHARKPECLICPLRDTCPSFG 315
>gi|342732970|ref|YP_004771809.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384456337|ref|YP_005668934.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417967782|ref|ZP_12608847.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|418015623|ref|ZP_12655188.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418373221|ref|ZP_12965312.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330425|dbj|BAK57067.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505958|gb|EGX28252.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984682|dbj|BAK80358.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380340820|gb|EIA29370.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|380341610|gb|EIA30084.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 209
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
DE E+ D IK G + + K +N L D E VP + ++ L+ + G+G
Sbjct: 67 DEKELQDKIKSIGLYRM---KSKNIINLCRILEERFDSE----VP--RTRDELITLPGVG 117
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ V AF VDV+V R++ R+G + P P + L+K I L
Sbjct: 118 RKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMKN------IDENL 170
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
W +C H+ +I G+ C R PNCG C + CK++
Sbjct: 171 WT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|417961869|ref|ZP_12604193.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
gi|380331928|gb|EIA22866.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
Length = 155
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
DE E+ D IK G + + K +N L D E VP + ++ L+ + G+G
Sbjct: 13 DEKELQDKIKSIGLYRM---KSKNIINLCRILEERFDSE----VP--RTRDELITLPGVG 63
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ V AF VDV+V R++ R+G + P P + L+K I L
Sbjct: 64 RKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMK------NIDENL 116
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
W +C H+ +I G+ C R PNCG C + CK++
Sbjct: 117 WT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 151
>gi|255305554|ref|ZP_05349726.1| endonuclease III [Clostridium difficile ATCC 43255]
Length = 405
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 263 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 312
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 313 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 365
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 366 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|188582085|ref|YP_001925530.1| HhH-GPD family protein [Methylobacterium populi BJ001]
gi|179345583|gb|ACB80995.1| HhH-GPD family protein [Methylobacterium populi BJ001]
Length = 259
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW + A +I I+ + A RIK L + E G++ L++L ++ D+ + +
Sbjct: 86 DWAEIEQASVEDIEATIRSVTWPELKAPRIKAVLAAVRERVGALSLDFLGDMSVDEARGW 145
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L I G+G K+ V S L+ A PVD + R+A R G + + G H L + P
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGSKVDVGPSHAVLRAQLP 205
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D W + LY+ H ++ G+ C SP CG C L C
Sbjct: 206 --DD-----W------SAQKLYDNHEVLMLHGQRVCFHHSPACGRCVLLDIC 244
>gi|238494280|ref|XP_002378376.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
gi|220695026|gb|EED51369.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
Length = 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 35/139 (25%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN---------RLVELHGS------ 1042
SV+W+AVR A ++ +AIK G ++ + +K L+ R + + G
Sbjct: 240 SVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPSD 299
Query: 1043 --------------------IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI 1082
+ L L + ++V E L+ G+G K+ CV L LQ
Sbjct: 300 LMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRP 359
Query: 1083 AFPVDVNVGRIAVRLGWVP 1101
F VD ++ RI LGWVP
Sbjct: 360 CFAVDTHIFRICKWLGWVP 378
>gi|298530217|ref|ZP_07017619.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298509591|gb|EFI33495.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 215
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + D+ +A+ I+ G I A R+K L + L + L L + ++++ LL
Sbjct: 63 EKMASLDDELLAELIRPSGYFRIKARRLKNLL-EFLRLECAYHLPDLSSQDLQQLRDKLL 121
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++G+G ++ + + L +L+ +F VD RI R V D+ H L+++ MD
Sbjct: 122 QVKGIGPETADSILLYALEKPSFVVDAYTSRILNRHLLVH-----EDIDYHELRDF-FMD 175
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
++ PR D E H ++ GK +C K +P C CPL
Sbjct: 176 RL-----PR----DVALYNEYHALLVRTGKKWCNKNNPRCDGCPL 211
>gi|425736476|ref|ZP_18854780.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei S18]
gi|425478146|gb|EKU45347.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei S18]
Length = 245
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D A+ A+ E+ + I+ G A I + N LV+ ++ VP + E
Sbjct: 77 DAHALAVANLGEVEELIRSTGFYRAKARNIVKLANDLVD-------DYDGEVP--RTMEE 127
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYP 1118
L+ + G+G K+ V + VD ++GR+A R GW P+ + I L +P
Sbjct: 128 LVKLAGVGRKTANVVLGNAFDTPGITVDTHMGRLARRFGWTTETDPVKAEEDIAAL--FP 185
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
K L L +++I G+ C R P CGACPL C F
Sbjct: 186 T-----------------KELTLLSHRVIFHGRRICHSRKPACGACPLMALCPSFG 224
>gi|448733380|ref|ZP_21715625.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
gi|445803114|gb|EMA53414.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
Length = 279
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIE 1064
AD+ +A+ I+ G N + + R+V+ +G + ++ P+ V++ LLD
Sbjct: 105 ADQPTLAETIESAGLYNQKSATMIAIAERIVDEYGGAEEFNGFVAEGDPETVRDALLDFS 164
Query: 1065 GLGLKSVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ +CV L S FPVD +V RI RLG P + ++ + + P
Sbjct: 165 GVGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPPEADHEEVRAVVEDQVPA---- 220
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
+K + H I FG+ +C R P C ACP+ C
Sbjct: 221 ------------EKCGFG-HTASIQFGREYCTARKPACLDDPDACPMADLC 258
>gi|431796640|ref|YP_007223544.1| endonuclease III [Echinicola vietnamensis DSM 17526]
gi|430787405|gb|AGA77534.1| endonuclease III [Echinicola vietnamensis DSM 17526]
Length = 227
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDLHI 1111
PD VKE L+ + G+G K+ + + VD +V R++ RLG VP P ++
Sbjct: 106 PDTVKE-LIKLPGVGRKTANVITSVVWNQPNMAVDTHVFRVSKRLGLVPQNAKTPLEVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P ++ ++ H+ +I G+ C RSP C AC + C+
Sbjct: 165 QLIKHIP-----------------KEHIHVAHHWLILHGRYVCLARSPKCTACEITHFCR 207
Query: 1172 HF---ASAVASARFALP 1185
++ S +A+ R LP
Sbjct: 208 YYEKNQSKIAAERDLLP 224
>gi|378828254|ref|YP_005190986.1| endonuclease III [Sinorhizobium fredii HH103]
gi|365181306|emb|CCE98161.1| putative endonuclease III protein [Sinorhizobium fredii HH103]
Length = 275
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ DAIK G A + RL+ G VP K +E L+ + G+G
Sbjct: 116 EEKLRDAIKTIGLYRNKAKNVIALSERLIADFGG-------AVP--KTREELMTLPGVGR 166
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ +L++ P
Sbjct: 167 KTANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEANLMRVIP---------- 215
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
QK LY H+ +I G+ CK R P C C + CK
Sbjct: 216 -------QKYLYHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|255099671|ref|ZP_05328648.1| endonuclease III [Clostridium difficile QCD-63q42]
Length = 405
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
EI+ IK G + +IK+ +L EL+ G + PD + E L+ + G+G K
Sbjct: 263 EISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PDSL-EKLIKLPGVGRK 312
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWP 1129
+ V + H A VD +V R++ R+G V +P P E+ +M+ I W
Sbjct: 313 TAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQK------TEFALMEAIPKERWS 365
Query: 1130 RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
H+ +I G+ CK R+P C +CP++ +C ++
Sbjct: 366 -----------HSHHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|288556139|ref|YP_003428074.1| endonuclease III [Bacillus pseudofirmus OF4]
gi|288547299|gb|ADC51182.1| endonuclease III [Bacillus pseudofirmus OF4]
Length = 218
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A IK+ LVE + VP D+ + L+ + G+G K+
Sbjct: 72 ELEEDIRRIGLFRSKAKNIKKLSQSLVEQYNG-------EVPKDR--DELVKLAGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + +++++ E +M KI + LW
Sbjct: 123 ANVVTSVAFGVPAIAVDTHVERVSKRLGICRWKD-----NVNVV-EQTLMKKIPIELWS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------DSHHRLIFFGRYHCKAQSPKCETCPLLDRCR 206
>gi|284165866|ref|YP_003404145.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
gi|284015521|gb|ADB61472.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
Length = 269
Score = 52.8 bits (125), Expect = 0.002, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 1007 ADESEIADAIKERG---QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDI 1063
A++S +A+ I G Q++ + R E++ + D ++++ P V+E LL I
Sbjct: 96 AEQSRLAETISSAGLYNQKSEVLIRTAEWVLEEFGSAAAFD-AFVKDEDPAAVRETLLSI 154
Query: 1064 EGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
G+G K+ +CV L + + FPVD +V RI R+G P + L +E P
Sbjct: 155 RGIGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHEGVRAVLEREVPAAK- 213
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFASAVA 1178
C H I FG+ +C R P C ACP+ C+ A
Sbjct: 214 ---------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMADVCEQVGVYPA 257
Query: 1179 SARFALPGPS 1188
+ P +
Sbjct: 258 TGEVVDPAAT 267
>gi|367042070|ref|XP_003651415.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
gi|346998677|gb|AEO65079.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
Length = 588
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE------------------- 1038
S++WE VR + E+ + IK G A IK+ L+ + E
Sbjct: 365 SINWEKVRLSSHQELVEVIKIAGNGPKKARHIKQILDMVYEENLQRAQGQPSLTKANPIQ 424
Query: 1039 --------LHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNV 1090
+ L+ + ++ D+ + G+G+K+ CV L L+ F VD +V
Sbjct: 425 RGDGTCVATQNLLSLDHMHSMSKDEAMAKFVSYPGIGIKTAACVTLFCLRMPCFAVDTHV 484
Query: 1091 GRIAVRLGWVPLQPLPGDLHIH 1112
+ LGWVP + P + H
Sbjct: 485 HKFCRWLGWVPAKADPDNCFRH 506
>gi|398380961|ref|ZP_10539074.1| endonuclease III [Rhizobium sp. AP16]
gi|397720025|gb|EJK80586.1| endonuclease III [Rhizobium sp. AP16]
Length = 259
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ H VD +V RIA RL P + P ++ LL
Sbjct: 135 QTREELMTLPGVGRKTANVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLL 193
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K P DQ LY H+ +I G+ CK R P C C + C+
Sbjct: 194 KVIP----------------DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|169350613|ref|ZP_02867551.1| hypothetical protein CLOSPI_01384 [Clostridium spiroforme DSM 1552]
gi|169292667|gb|EDS74800.1| endonuclease III [Clostridium spiroforme DSM 1552]
Length = 214
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
V++ L + G+G K+ VR ++ AF VD +V RI+ RLG+ ++ L +
Sbjct: 107 VQKELESLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKKDDNVLNVEKKLCR 166
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P ++ + H+Q I FG+ FCK +PNC C L CK
Sbjct: 167 SIP-----------------KERWNKAHHQFIFFGRYFCKATNPNCKECKLFDMCK 205
>gi|388543463|ref|ZP_10146754.1| endonuclease III [Pseudomonas sp. M47T1]
gi|388278775|gb|EIK98346.1| endonuclease III [Pseudomonas sp. M47T1]
Length = 212
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELHG VP D+ E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKARNVIEACRMLVELHGG-------EVPQDR--ESLEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G P K ++K + PR
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTGIAPG------------KNVIEVEKNLLKFVPRQ 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C +
Sbjct: 171 YLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|301300783|ref|ZP_07206967.1| endonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|418961299|ref|ZP_13513186.1| endonuclease III [Lactobacillus salivarius SMXD51]
gi|300851633|gb|EFK79333.1| endonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|380344966|gb|EIA33312.1| endonuclease III [Lactobacillus salivarius SMXD51]
Length = 213
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+A IK G A + E LVE S+ VP K + L+ + G+
Sbjct: 68 ADPKEVAKYIKTIGLYKNKAKYLVECSKMLVENFNSV-------VP--KTHKELMSLSGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + V AF VD +V RI+ RL VP + L+ + P D I+
Sbjct: 119 GRKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETERILMSKVPKEDWIKS- 177
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H++MI +G+ C R+P C CPL C+
Sbjct: 178 ----------------HHRMIFWGRYQCMARAPKCETCPLLEICQ 206
>gi|146306430|ref|YP_001186895.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina ymp]
gi|421504740|ref|ZP_15951681.1| endonuclease III [Pseudomonas mendocina DLHK]
gi|145574631|gb|ABP84163.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas mendocina ymp]
gi|400344698|gb|EJO93067.1| endonuclease III [Pseudomonas mendocina DLHK]
Length = 212
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVV-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C R P CGAC + C++ A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|448369885|ref|ZP_21556338.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
gi|445650325|gb|ELZ03249.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
Length = 276
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
P +V+E LLD+ G+G K+ +CV L + + FPVD +V RI RLG P D+
Sbjct: 151 PGEVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHEDVRE 210
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLR 1167
+ E P C H I FG+ C R P C ACP+
Sbjct: 211 VVEDEVPTAK----------CGFG-------HTATIQFGRELCTARKPACLDDPEACPMA 253
Query: 1168 GECKHFASAVASARFALP 1185
C A+ P
Sbjct: 254 DICDQVGVYPATGEVIDP 271
>gi|422644190|ref|ZP_16707328.1| endonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957742|gb|EGH58002.1| endonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 212
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH S VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNTKAKNVIETCRMLVELHNS-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVV-EVEKQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L H+ +I G+ C+ R P CG+C + C +
Sbjct: 169 ----KNYLLYAHHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|224541854|ref|ZP_03682393.1| hypothetical protein CATMIT_01026 [Catenibacterium mitsuokai DSM
15897]
gi|224525204|gb|EEF94309.1| endonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ + G+G K+ V + A VD +V RI+ RLG+ P D L E +
Sbjct: 111 LISLPGVGRKTANVVMAEGFGYPAIAVDTHVERISKRLGFAK----PED--TVLTVEKKL 164
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
M I W + H+QMI FG+ CK SP+C CPL CK
Sbjct: 165 MKTIPKNRWIKT-----------HHQMIFFGRYHCKAMSPHCKECPLVDICK 205
>gi|398355789|ref|YP_006401253.1| endonuclease III [Sinorhizobium fredii USDA 257]
gi|390131115|gb|AFL54496.1| endonuclease III [Sinorhizobium fredii USDA 257]
Length = 275
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ DAIK G A + +L+ GS VP K +E L+ + G+G
Sbjct: 116 EEKLRDAIKTIGLYRNKATNVIALSEKLLADFGS-------EVP--KTREELMTLPGVGR 166
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ +L++ P
Sbjct: 167 KTANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEANLMRVIP---------- 215
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+K LY H+ +I G+ CK R P C C + CK
Sbjct: 216 -------EKYLYHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|301105551|ref|XP_002901859.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
gi|262099197|gb|EEY57249.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
Length = 287
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 981 LRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VEL 1039
++R++ GE + + E V+ E ++++A+K G + A ++K L
Sbjct: 98 MQRLHQLGESE-----EGLTIEVVQSVSEEKLSEALKPVGFYHRKAHQLKRVAAILRTRF 152
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLG 1098
HG I P + E LL + G+G K + LL+ + VD +V R+A RLG
Sbjct: 153 HGDI---------PRSLDE-LLQLPGIGPKIGRVITLLAWGQVDGIVVDTHVHRLAQRLG 202
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
W P D L D I W +L + ++ FG+ C +
Sbjct: 203 WSSTTT-PEDTRKEL------EDWIPKEHWGKLSLV-----------VVGFGQTVCTAKH 244
Query: 1159 PNCGACPLRGECKHFASAVAS 1179
P+C CPL +C VAS
Sbjct: 245 PSCSKCPLATKCPSAFKVVAS 265
>gi|147920603|ref|YP_685600.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110620996|emb|CAJ36274.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 307
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 998 SVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
+D + AD+ E+ + I+ G + + I +E ++R GS LEW+R P +
Sbjct: 137 GIDVYKMASADKKELEELIRTSGPYKADFIIRCSQEIIDRW---GGS--LEWMRTAPTQE 191
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
+E L+ + G+G K+ +CV L +L H VD ++ R++ R G L GD K
Sbjct: 192 AREALMSLYGVGPKTADCVLLFALGHSVVAVDTHICRVSERTG---LSLATGDSEA--AK 246
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D + + P + H +I G+ FCK P CP+ C
Sbjct: 247 RRVKEDLERKHRIPGMA----------HLLIINLGRDFCKAVLPLHHECPVEDIC 291
>gi|229588698|ref|YP_002870817.1| endonuclease III [Pseudomonas fluorescens SBW25]
gi|229360564|emb|CAY47421.1| endonuclease III [Pseudomonas fluorescens SBW25]
Length = 212
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E LVELHGS VP + +E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRLLVELHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKPYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|240103334|ref|YP_002959643.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
gi|239910888|gb|ACS33779.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
Length = 230
Score = 52.4 bits (124), Expect = 0.002, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD +KE L+ + G+G K V A PVD +V RI+ RLG P + P + +
Sbjct: 118 PDDIKE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVPPEKVEEY 176
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L++ P +K +Y +++ M+ G+ C+ P C +CPL+ C +
Sbjct: 177 LMELIP----------------KEKWIY-VNHAMVDHGRSICRPIRPKCESCPLKELCPY 219
>gi|408483508|ref|ZP_11189727.1| endonuclease III [Pseudomonas sp. R81]
Length = 212
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E LVELHGS VP + +E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRLLVELHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKPYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|218883640|ref|YP_002428022.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
gi|218765256|gb|ACL10655.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
Length = 238
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
++ + L+++ G+G K+ + V L + FPVD ++ RI +R+G+ G
Sbjct: 129 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGF------TGS----- 177
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ Y + + M YLD LH +IT G+ C+ R P C C LR CK+
Sbjct: 178 -RSYKHISRFWMDNTSPGNYLD------LHLYLITHGRRTCRARKPLCNKCVLRDMCKY 229
>gi|330502366|ref|YP_004379235.1| DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
[Pseudomonas mendocina NK-01]
gi|328916652|gb|AEB57483.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina NK-01]
Length = 212
Score = 52.4 bits (124), Expect = 0.002, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS V PD +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS--------VVPDN-REDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVV-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C R P CGAC + C++ A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|315227180|ref|ZP_07868967.1| endonuclease III [Parascardovia denticolens DSM 10105 = JCM 12538]
gi|315119630|gb|EFT82763.1| endonuclease III [Parascardovia denticolens DSM 10105 = JCM 12538]
Length = 327
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 22/172 (12%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ A+ SE+A+ I G A N L+ G VP + E L
Sbjct: 175 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 225
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ + + FPVD +V R+ RL W D + + KE V
Sbjct: 226 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHWRSDWNKTKDDPVAIEKE--VTAA 283
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ W +L +++I FG+ C R P C CPLR C F
Sbjct: 284 FEPTEW-----------RDLSHRLIDFGRDTCHARKPECLICPLRDTCPSFG 324
>gi|296133481|ref|YP_003640728.1| HhH-GPD family protein [Thermincola potens JR]
gi|296032059|gb|ADG82827.1| HhH-GPD family protein [Thermincola potens JR]
Length = 232
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ A EI I + A +++ F+N +++ HG DL+ ++++ L
Sbjct: 68 EAMYKAPIEEIEKHIVPTLYWRMKAKKLRAFVNHIMDNYHG--DLDKFLQKDKEELRREL 125
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
L + G+G ++ + + L + + F VD RI RLG+ ++ +K P
Sbjct: 126 LSLYGIGPETADSIILYAAEQPVFVVDAYTRRIFHRLGFFEESVSYDEMQQFFMKHIP-- 183
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + Y + E H ++ G FC + P+CG CP++ C+
Sbjct: 184 --------PDVRYYN-----EYHALIVGIGNRFCSNKKPDCGNCPIQSVCR 221
>gi|239947055|ref|ZP_04698808.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921331|gb|EER21355.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
Length = 212
Score = 52.4 bits (124), Expect = 0.002, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P+ KE L+ + G+G K+ V VD +V R+A R+G+ P +
Sbjct: 105 PNDFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIGFAKGNS-PEIVEKE 162
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LL+ +D+K L HY +I G+ CK R P+C CP++ C++
Sbjct: 163 LLQ-----------------IIDEKWLTHAHYWLILHGRYICKARKPDCDICPIKEYCEY 205
Query: 1173 FASAVAS 1179
+ +A +S
Sbjct: 206 YINAFSS 212
>gi|415726092|ref|ZP_11470593.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
gi|388063965|gb|EIK86533.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
Length = 223
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 1048 LRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPG 1107
V P K+++ L + G+G K+ VR + FPVD +V R+ RLGW P
Sbjct: 106 FHGVVPSKMED-LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKP- 163
Query: 1108 DLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
K+Y + I+ + Y D L +++I G+ C R+P C CPL+
Sbjct: 164 -------KKYANPESIEKEI---TSYFDPADWANLSHRLILHGRKICTARNPKCALCPLK 213
Query: 1168 GEC 1170
C
Sbjct: 214 TTC 216
>gi|160902834|ref|YP_001568415.1| endonuclease III [Petrotoga mobilis SJ95]
gi|160360478|gb|ABX32092.1| endonuclease III [Petrotoga mobilis SJ95]
Length = 210
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
AG K+ R++ + I +E PD+++E L+++ G+G K+ V +S A
Sbjct: 75 AGMYKQKSERIINI-SKILIEKYNGKVPDELEE-LIELPGVGRKTANIVLYVSFGKEALA 132
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ 1145
VD +V RI+ RLGWV + P + L K P LW L+
Sbjct: 133 VDTHVHRISNRLGWVKTKT-PEETEEQLKKIIP------SELWG-----------PLNGS 174
Query: 1146 MITFGKIFCKKRSPNCGACPLRGEC 1170
M+ FG+ CK SP C C L C
Sbjct: 175 MVNFGQKICKPISPKCDECFLNEVC 199
>gi|395496886|ref|ZP_10428465.1| endonuclease III [Pseudomonas sp. PAMC 25886]
Length = 212
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E LVELHGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVELHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKPYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|299538661|ref|ZP_07051944.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|424736041|ref|ZP_18164502.1| endonuclease III [Lysinibacillus fusiformis ZB2]
gi|298726248|gb|EFI66840.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|422950070|gb|EKU44440.1| endonuclease III [Lysinibacillus fusiformis ZB2]
Length = 220
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I+ RL++ +G +P +E L+ + G+G K+
Sbjct: 72 ELQQDIRSIGLYRNKAKNIQALCQRLLDEYGG-------EIPA--TREALVTLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ E +M K M W +
Sbjct: 123 ANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKDSVLEV------EETIMKKTPMEKWSK 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+Q+I FG+ CK ++P C CPL +C+
Sbjct: 177 T-----------HHQLIFFGRYHCKAQNPGCRTCPLLNDCR 206
>gi|222087212|ref|YP_002545747.1| endonuclease III [Agrobacterium radiobacter K84]
gi|221724660|gb|ACM27816.1| endonuclease III [Agrobacterium radiobacter K84]
Length = 259
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ H VD +V RIA RL P + P ++ L+
Sbjct: 135 QTREELMTLPGVGRKTANVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLM 193
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K P DQ LY H+ +I G+ CK R P C C + C+
Sbjct: 194 KVIP----------------DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|406967816|gb|EKD92806.1| hypothetical protein ACD_28C00327G0009 [uncultured bacterium]
Length = 224
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 39/170 (22%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSI--DLEWLRNVPPDKVKEYLLDIEG 1065
E + I+ G N A I + +L+E HG I LE L ++P G
Sbjct: 70 EETLRAKIRSCGYFNQKAKNIIKASQKLIEKYHGEIPQSLEDLTSLP------------G 117
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+GLKS V + AFPVD +V R+A R+G V DK
Sbjct: 118 VGLKSAGVVLSQAFAIPAFPVDTHVFRVANRIGLV---------------HEKTRDKTAY 162
Query: 1126 YL---WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L P+ C++D H Q+I G+ CK + P C CP++ C++
Sbjct: 163 ALEKTLPQDCWID------FHLQLIFHGRKTCKSQKPRCYECPVKDLCEY 206
>gi|297584383|ref|YP_003700163.1| endonuclease III [Bacillus selenitireducens MLS10]
gi|297142840|gb|ADH99597.1| endonuclease III [Bacillus selenitireducens MLS10]
Length = 217
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K K L + G+G K+ V ++ A VD +V R++ RLG + ++ L+
Sbjct: 107 KSKTELKKLAGVGRKTANVVASVAFDEPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ P ++ H++MI FG+ CK ++PNC ACPL C+
Sbjct: 167 KKIP-----------------REEWSVTHHRMIFFGRYHCKAQNPNCTACPLSDMCR 206
>gi|85710081|ref|ZP_01041146.1| endonuclease III family protein [Erythrobacter sp. NAP1]
gi|85688791|gb|EAQ28795.1| endonuclease III family protein [Erythrobacter sp. NAP1]
Length = 234
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAV A ++ ++ + + A R+K+ LN ++E GS+DL L N+ + +L
Sbjct: 70 WEAVAAAPVGDLEARLQRQTFPTVAAQRLKQCLNTIIEQRGSVDLRHLSNLETAEAMAWL 129
Query: 1061 LDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+ G+ K S + S A +D + RI R+G VP + K Y
Sbjct: 130 ETLPGVARKNSAGVMNASSFNRRAMVIDGHHRRIMQRMGIVPAKA-------DTAKTYDA 182
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ I W + E H + G+ C+ R+ C CP +C+
Sbjct: 183 LMPIVPEEW------SAADIDEHHLLLKKLGQTCCRPRAALCEDCPAAPDCE 228
>gi|336476216|ref|YP_004615357.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae DSM
4017]
gi|335929597|gb|AEH60138.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae DSM
4017]
Length = 203
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A+ SEI + IK+ G + + R+KE L+ +G VP + E LL++ G+
Sbjct: 63 AEVSEIEELIKDVGFYRVKSRRVKEIAEILMYRYGG-------EVPDNC--ELLLELPGV 113
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ CV L + VD +V RI+ RLG V P + L K
Sbjct: 114 GRKTANCVLLYAFSKETIAVDTHVHRISNRLGLVK-SSTPDETEEKLKK----------- 161
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ PR + D L+ + FG+ C+ SP C C L C
Sbjct: 162 ILPRSSWKDINELF------VQFGQNICRPVSPKCDICVLCNIC 199
>gi|312134533|ref|YP_004001871.1| hhh-gpd family protein [Caldicellulosiruptor owensensis OL]
gi|311774584|gb|ADQ04071.1| HhH-GPD family protein [Caldicellulosiruptor owensensis OL]
Length = 234
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + ++A+ IK G N A R+KEF N L S DLE L + +++ LL
Sbjct: 75 EGILQTPDEKLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRKALL 133
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + + + Y +
Sbjct: 134 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI----------SYSDLQ 183
Query: 1122 KIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I M L P+ + + E H ++ K CK + P C C LR C +
Sbjct: 184 AIIMAKLTPQTKFFN-----EFHALIVKHCKEICKSKKPICNKCCLRLICNYL 231
>gi|126651184|ref|ZP_01723394.1| Nth [Bacillus sp. B14905]
gi|126592022|gb|EAZ86088.1| Nth [Bacillus sp. B14905]
Length = 220
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V ++ A VD +V R++ RLG + ++ ++K+
Sbjct: 109 REALVTLPGVGRKTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKDSVLEVEETIMKK 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P MDK W + H+Q+I FG+ CK ++P C CPL +C+
Sbjct: 169 TP-MDK-----WSKT-----------HHQLIFFGRYHCKAQNPGCHTCPLLSDCR 206
>gi|410668427|ref|YP_006920798.1| endonuclease [Thermacetogenium phaeum DSM 12270]
gi|409106174|gb|AFV12299.1| putative endonuclease [Thermacetogenium phaeum DSM 12270]
Length = 261
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + E+A ++ N A +++ F +VE G +LE + ++++ LL
Sbjct: 65 EGLLSCSQEELAALVRPARYHNQKAKKLQSFCRVVVEEFGG-ELEDFLALEMKELRKRLL 123
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G ++ + + L + + F +D GRI RLG+ + Y M
Sbjct: 124 AVYGIGPETADAIILYAAEKPIFVIDAYTGRIFSRLGFFSEKA-----------GYEEMQ 172
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ M P D + E H + G C K P CG CPL CK
Sbjct: 173 RFFMTHLPP----DVRLYNEYHALIDALGHYTCCKSQPRCGECPLEYRCK 218
>gi|95928500|ref|ZP_01311247.1| HhH-GPD [Desulfuromonas acetoxidans DSM 684]
gi|95135290|gb|EAT16942.1| HhH-GPD [Desulfuromonas acetoxidans DSM 684]
Length = 220
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
V++ LLD G+G ++ +C+ L F VD RI RLG LL
Sbjct: 115 VRQRLLDQPGIGPETADCMVLYGAGLPIFVVDAYTRRIFSRLG--------------LLD 160
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
D +Q Y L D E H ++ GK+ C+ R+P C ACPL C+
Sbjct: 161 AKARYDMVQRYAMQHL-PADTSLFNEFHALLVELGKVCCRSRNPRCEACPLNQHCR 215
>gi|49078760|gb|AAT49817.1| PA3495, partial [synthetic construct]
Length = 213
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R+A R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++ L + H+ +I G+ CK R P CG+C + C++
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|320100933|ref|YP_004176525.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
gi|319753285|gb|ADV65043.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
Length = 223
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
++ + L+++ G+G K+ + V L FPVD ++ RI R+G+
Sbjct: 114 NEARRRLMELPGVGEKTADVVLLRYFGIPVFPVDTHISRITRRMGFTE------------ 161
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
Y + M YL ELH +IT G+ CK R P C C LR CKH+
Sbjct: 162 TGRYSDVSSFWMENTSPWNYL------ELHLYLITHGRRICKARKPLCDECVLRDLCKHY 215
>gi|355640219|ref|ZP_09051638.1| endonuclease III [Pseudomonas sp. 2_1_26]
gi|354831431|gb|EHF15446.1| endonuclease III [Pseudomonas sp. 2_1_26]
Length = 212
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R+A R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++ L + H+ +I G+ CK R P CG+C + C++
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|333901551|ref|YP_004475424.1| endonuclease III [Pseudomonas fulva 12-X]
gi|333116816|gb|AEF23330.1| endonuclease III [Pseudomonas fulva 12-X]
Length = 212
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP ++ E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPG------------KNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K + PR LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KKLLKFVPRDYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|283782700|ref|YP_003373454.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|298253131|ref|ZP_06976923.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
gi|283442104|gb|ADB14570.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|297532526|gb|EFH71412.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
Length = 224
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+ + G+G K+ V + FPVD +V R+ RLGW +Q P + I
Sbjct: 122 EALISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+I Y P K L +++I G+ C R+P C +CPL C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|222099270|ref|YP_002533838.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
gi|221571660|gb|ACM22472.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
Length = 208
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 29/168 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEG 1065
A ++ D IKE G A RI + +VE + G + PD ++E LL + G
Sbjct: 60 AKPEDLYDLIKESGMYRQKAERIVKISKIIVEKYSGKV---------PDTLEE-LLRLPG 109
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ V + + A VD +V RI+ RLGWV + P + L + P
Sbjct: 110 VGRKTANIVLWVGFRKPALAVDTHVHRISNRLGWVKTKT-PEETEKALKRLLP------- 161
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+K ++ M+ FG+ C+ +P C C L+ C+++
Sbjct: 162 ----------EKLWGPINGSMVEFGRNVCRPVNPKCEDCFLKKHCEYY 199
>gi|424069009|ref|ZP_17806457.1| endonuclease III [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|407995815|gb|EKG36323.1| endonuclease III [Pseudomonas syringae pv. avellanae str. ISPaVe013]
Length = 212
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNG-------EVP--QTREALETLPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|390961830|ref|YP_006425664.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
gi|390520138|gb|AFL95870.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
Length = 238
Score = 52.0 bits (123), Expect = 0.003, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD + E L+ + G+G K V A PVD +V RI+ RLG P + P
Sbjct: 126 PDDIHE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVPP------ 178
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+K++ YL R +K +Y +++ M+ GK C P CG CPL+ C +
Sbjct: 179 --------EKVEEYL--RELIPREKWIY-VNHAMVDHGKNICNPIRPKCGECPLKELCPY 227
>gi|429214593|ref|ZP_19205756.1| endonuclease III [Pseudomonas sp. M1]
gi|428154879|gb|EKX01429.1| endonuclease III [Pseudomonas sp. M1]
Length = 212
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP ++ E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRILIEKHGS-------KVPENR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R+A R P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTNIAPGKNVL-EVERKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++ L + H+ +I G+ CK R P CG+C + C++
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|357452087|ref|XP_003596320.1| DEMETER-like protein [Medicago truncatula]
gi|355485368|gb|AES66571.1| DEMETER-like protein [Medicago truncatula]
Length = 192
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 537 EHGALVPHQ-IKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKER 595
E ALV Q + KK V LD T ++ L+++ + D T NED KWW++ER
Sbjct: 24 EQNALVLFQGSSDPVKKQHANVDLDEETNKVRKLLLSYLNPDGVDGT-NEDKAKWWEEER 82
Query: 596 EVFEGRIQSFTARMHLILGDRRFKPWKGSVV 626
++F GR +SF ARMH I G +F WKGSVV
Sbjct: 83 KLFRGRSESFIARMHPIQGYIQFSIWKGSVV 113
>gi|159041229|ref|YP_001540481.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
gi|157920064|gb|ABW01491.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
Length = 233
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 1034 NRLVELHGSI----DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 1089
+RLV + +I L L + D+V+ LL ++G+G ++ + + L +L + P+
Sbjct: 99 SRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTY 158
Query: 1090 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITF 1149
R+ R+ + +L Y M L PR Y + L+ H ++T
Sbjct: 159 TIRVIKRI------------YGYLGGGYEDWRLTLMKLLPRGLY--EYKLF--HAGVVTT 202
Query: 1150 GKIFCKKRSPNCGACPLRGECKH 1172
GK +C K +P C CPLR +C+
Sbjct: 203 GKEWCLKETPRCIECPLRNQCRF 225
>gi|386346167|ref|YP_006044416.1| HhH-GPD family protein [Spirochaeta thermophila DSM 6578]
gi|339411134|gb|AEJ60699.1| HhH-GPD family protein [Spirochaeta thermophila DSM 6578]
Length = 253
Score = 52.0 bits (123), Expect = 0.003, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLP-GDLHIHLLK 1115
+ LL + G+G ++ + + L F VD RI RLG + P ++ + K
Sbjct: 146 RNALLGVWGVGRETADSILLYGYGVPVFVVDAYTRRIFSRLGLLASDDTPYEEVRSAVEK 205
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
P LD E H ++ K FC+KR P CG CPLR EC H +S
Sbjct: 206 TLP---------------LDHVCYNEFHALLVEHAKRFCRKR-PLCGECPLRLECAHLSS 249
Query: 1176 AVAS 1179
A S
Sbjct: 250 AGGS 253
>gi|14591284|ref|NP_143362.1| endonuclease III [Pyrococcus horikoshii OT3]
gi|3257923|dbj|BAA30606.1| 222aa long hypothetical endonuclease III [Pyrococcus horikoshii OT3]
Length = 222
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PDK +E L+ + G+G K V A PVD +V RI+ RLG P P ++
Sbjct: 112 PDKFEE-LIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEER 170
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L P ++ +Y +++ M+ GK CK P C CPLRG C
Sbjct: 171 LKSLIP----------------REEWIY-VNHAMVDHGKSVCKPIKPRCWECPLRGLC 211
>gi|397780479|ref|YP_006544952.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
gi|396938981|emb|CCJ36236.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
Length = 233
Score = 52.0 bits (123), Expect = 0.003, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D + + AD +IA I N A RI+EF V D + V ++E
Sbjct: 63 LDPDLLAAADTGDIARLIIPSRFYNQKAERIQEFAGIYVA-EFQADPAVMAAVETGALRE 121
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL + G G ++V+ + L + + F VD RI R G LL E
Sbjct: 122 RLLAVRGFGKETVDTILLYACRKPVFVVDAYTRRIFSRYG--------------LLPEKV 167
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
D+ Q L D K + H Q++ GK C+K SP C CP+R C A A
Sbjct: 168 SYDRTQRLFSDHLP-PDVKLFNDYHAQIVRLGKTACRK-SPLCDRCPIRRVCGSLRCAAA 225
>gi|198283588|ref|YP_002219909.1| HhH-GPD family protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665212|ref|YP_002426212.1| base excision repair protein, HhH-GPD family [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248109|gb|ACH83702.1| HhH-GPD family protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517425|gb|ACK78011.1| base excision repair protein, HhH-GPD family [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 223
Score = 52.0 bits (123), Expect = 0.003, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 996 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG----SIDLEWLRNV 1051
+D++ A+ E ++A+ ++ G I R+ L R +E G L N+
Sbjct: 57 VDALSVRALLALPEGDLAELLRPSGFYRIKTRRLLA-LCRFLEARGVGAAPEQLARQANI 115
Query: 1052 PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
P +++ LL + G+G ++ + + L +L VD RI RLG
Sbjct: 116 P--TLRKDLLAVHGIGAETADSILLYALGLPVMVVDAYTRRIGSRLG------------- 160
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
LL++ ++Q + L D +T LH +++ GK +C+ R P CG CPL C
Sbjct: 161 -LLEDDLSYGEVQAGMEAELQPGDVQTRNALHALLVSLGKDYCRPR-PRCGLCPLHACCA 218
Query: 1172 HFASA 1176
+ A A
Sbjct: 219 YAAGA 223
>gi|330837763|ref|YP_004412404.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329749666|gb|AEC03022.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 237
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ + +I AI G A I E +LVE HG + VPPDK E L+
Sbjct: 88 AMLALSQEQIETAIAPAGFFRTKARNILEISKKLVEEHGGL-------VPPDK--EALVS 138
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ L A VD +V IA R GWV + P L K P
Sbjct: 139 LPGVGTKTANLTLNLGFGIDAICVDCHVHTIANRTGWVSTKN-PEQTEKELEKILP---- 193
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ L+ ++++G+ C SP C CP+ C
Sbjct: 194 -------------RRFWIPLNELLVSYGQKICTSVSPRCSICPIASTC 228
>gi|15598691|ref|NP_252185.1| endonuclease III [Pseudomonas aeruginosa PAO1]
gi|107103025|ref|ZP_01366943.1| hypothetical protein PaerPA_01004094 [Pseudomonas aeruginosa PACS2]
gi|116051512|ref|YP_789652.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|218890260|ref|YP_002439124.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|254236439|ref|ZP_04929762.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|254242175|ref|ZP_04935497.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|296387984|ref|ZP_06877459.1| endonuclease III [Pseudomonas aeruginosa PAb1]
gi|313108859|ref|ZP_07794842.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|386057540|ref|YP_005974062.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|386067541|ref|YP_005982845.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|392982768|ref|YP_006481355.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|416867830|ref|ZP_11916116.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|416875861|ref|ZP_11918934.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|418584272|ref|ZP_13148336.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|418591842|ref|ZP_13155728.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|419754900|ref|ZP_14281258.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|420138609|ref|ZP_14646508.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|421152679|ref|ZP_15612257.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|421158996|ref|ZP_15618178.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|421166302|ref|ZP_15624564.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|421173249|ref|ZP_15631001.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|421179340|ref|ZP_15636932.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|421518036|ref|ZP_15964710.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|424939679|ref|ZP_18355442.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|451987559|ref|ZP_21935715.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|9949641|gb|AAG06883.1|AE004770_8 endonuclease III [Pseudomonas aeruginosa PAO1]
gi|115586733|gb|ABJ12748.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168370|gb|EAZ53881.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|126195553|gb|EAZ59616.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|218770483|emb|CAW26248.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|310881344|gb|EFQ39938.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|334833542|gb|EGM12621.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|334841489|gb|EGM20117.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|346056125|dbj|GAA16008.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|347303846|gb|AEO73960.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|348036100|dbj|BAK91460.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|375046119|gb|EHS38687.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|375049324|gb|EHS41825.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|384398718|gb|EIE45123.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|392318273|gb|AFM63653.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|403248618|gb|EJY62175.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|404347518|gb|EJZ73867.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|404524991|gb|EKA35279.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|404536198|gb|EKA45844.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|404538732|gb|EKA48254.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|404547208|gb|EKA56220.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|404548847|gb|EKA57786.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|451754792|emb|CCQ88238.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|453047484|gb|EME95198.1| endonuclease III [Pseudomonas aeruginosa PA21_ST175]
Length = 212
Score = 52.0 bits (123), Expect = 0.003, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R+A R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++ L + H+ +I G+ CK R P CG+C + C++
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|385840352|ref|YP_005863676.1| Endonuclease III [Lactobacillus salivarius CECT 5713]
gi|300214473|gb|ADJ78889.1| Endonuclease III [Lactobacillus salivarius CECT 5713]
Length = 213
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+A+ +K G A + E LV+ S+ VP K + L+ + G+
Sbjct: 68 ADPKEVAEYVKTIGLYKNKAKYLVECSKMLVDNFNSV-------VP--KTHKELMSLSGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + V AF VD +V RI+ RL VP + L+ + P D I+ Y
Sbjct: 119 GRKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETEKILMSKVPKEDWIKSY 178
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++MI +G+ C R+P C CPL C+
Sbjct: 179 -----------------HRMIFWGRYQCMARAPKCETCPLLEICQ 206
>gi|260905496|ref|ZP_05913818.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Brevibacterium linens BL2]
Length = 246
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKE 1058
D ++ A+ E+ + I G A I + N LV+ + G + P+ + +
Sbjct: 78 DAHSLAVANLIEVEELIHSTGFYRAKARNIVKLANELVDTYDGEV---------PNSL-D 127
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L+ + G+G K+ V + VD ++GR+A RLGW ++ P
Sbjct: 128 RLVKLAGVGRKTANVVLGNAFDTPGLTVDTHMGRLARRLGWTE-------------EDDP 174
Query: 1119 VMDKIQMY-LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
V + ++ L+P+ K L L +++I G+ C R P CGACPL C F
Sbjct: 175 VKAEHEIAALFPK------KDLTLLSHRVIFHGRRICHSRRPACGACPLMALCPSFG 225
>gi|289676761|ref|ZP_06497651.1| endonuclease III [Pseudomonas syringae pv. syringae FF5]
gi|302184713|ref|ZP_07261386.1| endonuclease III [Pseudomonas syringae pv. syringae 642]
gi|422637597|ref|ZP_16701029.1| endonuclease III [Pseudomonas syringae Cit 7]
gi|422669201|ref|ZP_16729050.1| endonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|440742104|ref|ZP_20921433.1| endonuclease III [Pseudomonas syringae BRIP39023]
gi|330949993|gb|EGH50253.1| endonuclease III [Pseudomonas syringae Cit 7]
gi|330981559|gb|EGH79662.1| endonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|440377927|gb|ELQ14561.1| endonuclease III [Pseudomonas syringae BRIP39023]
Length = 212
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
Length = 212
Score = 51.6 bits (122), Expect = 0.003, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EAV + + I+ G Q A I E + E+ +I+ K L
Sbjct: 65 EAVLSLGTERLKELIRPAGLQEQKASAIVEAARKWEEVKKAIE---------KGDKGVLT 115
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
I+G+G K+ + V L+S H FPVD +V R+A RLG V G+ + KE
Sbjct: 116 RIKGIGEKTADVV-LMSFGHEEFPVDTHVKRVAKRLGLVD-----GNAY----KE----- 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ RL L + E H +I G+ +CK + P C CPL C
Sbjct: 161 -----VSSRLKELFKGRTREAHMYLILLGRKYCKAKKPLCSECPLSDLC 204
>gi|424073453|ref|ZP_17810869.1| endonuclease III [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|407996102|gb|EKG36595.1| endonuclease III [Pseudomonas syringae pv. avellanae str. ISPaVe037]
Length = 212
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|189423447|ref|YP_001950624.1| HhH-GPD family protein [Geobacter lovleyi SZ]
gi|189419706|gb|ACD94104.1| HhH-GPD family protein [Geobacter lovleyi SZ]
Length = 225
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 1074
I+ G N+ A R++ F L + + GS+D L P + + LL ++G+G ++ + +
Sbjct: 76 IRPAGYFNVKAVRLQAFTTFLQQQYQGSLDR--LFAAPWQQTRTELLAVKGIGPETADSI 133
Query: 1075 RLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYL 1134
L + +F VD RI RLG L+ E D ++ + RL L
Sbjct: 134 LLYAGHKPSFVVDAYTRRIFSRLG--------------LVDERISYDGLRRHFMDRLT-L 178
Query: 1135 DQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
D E H ++ GK C+ R P C +C L +C + A+
Sbjct: 179 DTALFNEYHALLVELGKQACRPR-PQCSSCCLAAQCSYNAT 218
>gi|66047115|ref|YP_236956.1| endonuclease III/Nth [Pseudomonas syringae pv. syringae B728a]
gi|422675381|ref|ZP_16734726.1| endonuclease III [Pseudomonas syringae pv. aceris str. M302273]
gi|63257822|gb|AAY38918.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Pseudomonas syringae pv. syringae B728a]
gi|330973100|gb|EGH73166.1| endonuclease III [Pseudomonas syringae pv. aceris str. M302273]
Length = 212
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|228469748|ref|ZP_04054714.1| endonuclease III [Porphyromonas uenonis 60-3]
gi|228308683|gb|EEK17416.1| endonuclease III [Porphyromonas uenonis 60-3]
Length = 214
Score = 51.6 bits (122), Expect = 0.003, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDLHIHLLK 1115
+E L + G+G KS + + A PVD +V R+A R+G + P + L +
Sbjct: 109 REELEALPGVGRKSASVMLAVCFDTPAMPVDTHVFRVAKRIGLASSRATTPLAVEQALRR 168
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
P ++ L H+Q+I G+ CK R P C C L C+H+A+
Sbjct: 169 RIP-----------------REQLIRAHHQLILLGRYICKARKPLCDECTLTACCRHYAT 211
Query: 1176 A 1176
A
Sbjct: 212 A 212
>gi|57641076|ref|YP_183554.1| endonuclease III [Thermococcus kodakarensis KOD1]
gi|57159400|dbj|BAD85330.1| endonuclease III [Thermococcus kodakarensis KOD1]
Length = 246
Score = 51.6 bits (122), Expect = 0.003, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 34/153 (22%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD + E L+ + G+G K V A PVD +V RI+ RLG P + P
Sbjct: 125 PDDIHE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVAP------ 177
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+K++ YL + +K +Y +++ M+ G+ C+ +P C CPLR C
Sbjct: 178 --------EKVEEYLTALIP--KEKWIY-VNHAMVDHGRSICRPINPKCEECPLREFC-- 224
Query: 1173 FASAVASARFALPGPSEKGIVTSEFGNGIGQSP 1205
P KG+VT E G + P
Sbjct: 225 --------------PYAKGLVTDEDIKGNARKP 243
>gi|429331422|ref|ZP_19212179.1| endonuclease III [Pseudomonas putida CSV86]
gi|428763895|gb|EKX86053.1| endonuclease III [Pseudomonas putida CSV86]
Length = 212
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVE HGS VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRILVEQHGS-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R G P K ++K + P+
Sbjct: 123 NVVLNTAFRQLAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKALLKFVPKA 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 171 YLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|259501844|ref|ZP_05744746.1| endonuclease III [Lactobacillus antri DSM 16041]
gi|259170169|gb|EEW54664.1| endonuclease III [Lactobacillus antri DSM 16041]
Length = 213
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
V P +KE L + G+G K + V AFPVD +V R+A RL VP P L
Sbjct: 103 GVVPQTLKE-LTSLPGVGRKVADVVLAECFAIPAFPVDTHVSRVARRLAMVP--PKASLL 159
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
I E +M+ + PR +LD H+ MI +G+ C R+P C CPL
Sbjct: 160 TI----EKKLMEAV-----PRDKWLDA------HHSMIFWGRYRCMARNPRCSDCPLLPM 204
Query: 1170 C 1170
C
Sbjct: 205 C 205
>gi|389817685|ref|ZP_10208278.1| endonuclease III [Planococcus antarcticus DSM 14505]
gi|388464453|gb|EIM06784.1| endonuclease III [Planococcus antarcticus DSM 14505]
Length = 226
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
VP D+ + L+ + G+G K+ V ++ A VD +V R+A RLG + P +
Sbjct: 105 VPADR--DLLMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVAKRLGLNRWKDNPLQVE 162
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++K+ P D W + H+Q+I FG+ CK + P C CPL C
Sbjct: 163 ETIMKKTPADD------WSKT-----------HHQIIFFGRYHCKSQKPGCHICPLFDRC 205
Query: 1171 K 1171
+
Sbjct: 206 R 206
>gi|307718171|ref|YP_003873703.1| hypothetical protein STHERM_c04580 [Spirochaeta thermophila DSM 6192]
gi|306531896|gb|ADN01430.1| hypothetical protein STHERM_c04580 [Spirochaeta thermophila DSM 6192]
Length = 253
Score = 51.6 bits (122), Expect = 0.004, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ LL + G+G ++ + + L F VD RI RLG + P +
Sbjct: 146 RNALLGVWGVGRETADSILLYGYGVPVFVVDAYTRRIFSRLGLLASDDTPYE-------- 197
Query: 1117 YPVMDKIQMYLWP-RLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
V ++ + P +CY E H ++ K FC+KR P CG CPLR EC H +S
Sbjct: 198 -EVRSAVEEAVPPDHVCY------NEFHALLVEHAKRFCRKR-PLCGECPLRLECAHLSS 249
Query: 1176 AVAS 1179
A S
Sbjct: 250 AGGS 253
>gi|227485039|ref|ZP_03915355.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus lactolyticus
ATCC 51172]
gi|227237036|gb|EEI87051.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus lactolyticus
ATCC 51172]
Length = 201
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 31/168 (18%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D E+ + I+ G A IK L+E + SI VP DK KE L + G+G
Sbjct: 58 DIKELENHIRTIGIYRNKAKNIKAASKILIEDYNSI-------VPADK-KE-LQKLPGVG 108
Query: 1068 LKS--VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
K+ V C + IA VD +V R+A R+G L + +DK Q
Sbjct: 109 RKTANVVCANAFGIPSIA--VDTHVFRVANRIG---------------LADANNVDKTQD 151
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
L RL D+ + H+Q+IT G++ CK R+P C C + C ++
Sbjct: 152 QLEKRL---DKSRWSKTHHQLITHGRVLCKARNPLCEECLINKLCIYY 196
>gi|300770189|ref|ZP_07080068.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762665|gb|EFK59482.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 228
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ A E+ I+ N A + N L+E +G + P+++++ L
Sbjct: 63 EALAAASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEV---------PEQIED-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ + G+G K+ + + A VD +V R++ RLG P + L+K
Sbjct: 113 IKLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVK----- 167
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+L ++T+ H+ +I G+ C R P C CP+ CK++
Sbjct: 168 ------------FLPEETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYY 208
>gi|373461989|ref|ZP_09553722.1| endonuclease III [Prevotella maculosa OT 289]
gi|371950166|gb|EHO68024.1| endonuclease III [Prevotella maculosa OT 289]
Length = 236
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 29/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYL 1060
EA+ AD EI IK N A + E LV + +G + PD + L
Sbjct: 71 EAMAKADWEEIFQLIKSVSYPNAKAHHLSEMAKMLVAQFNGEV---------PDNTDD-L 120
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPV 1119
+ G+G K+ V+ + VD +V R++ RLG VP P + + L+K P
Sbjct: 121 TRLPGVGRKTANVVQAVWFGKPTLAVDTHVFRVSHRLGLVPETANTPLKVELELMKYIPE 180
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+D + + H+ ++ G+ CK + P C +CP C
Sbjct: 181 VD-----------------VSDAHHWLLLHGRYVCKSQKPQCESCPFNAFC 214
>gi|346976316|gb|EGY19768.1| HhH-GPD family base excision DNA repair protein [Verticillium dahliae
VdLs.17]
Length = 543
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 76/208 (36%), Gaps = 68/208 (32%)
Query: 998 SVDWEAVRCADESEIADA--------------------------------IKER------ 1019
S+ W VR ++ESE+ DA IKER
Sbjct: 295 SIAWNKVRLSEESEVVDAVKRAGLGPTKGRDIKSILDMVHRDNQVRLAAYIKERETGEMA 354
Query: 1020 ---GQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
G QN+ G+ + ++ G + L+ +R + D+ G+G+K+ C+ L
Sbjct: 355 DILGAQNLTQGQKDHQVKKMES--GILTLDHVRGLTSDEAMLEFTKYPGIGVKTSSCLIL 412
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
LQ +F VD +V R L WVP + D ++H E + D ++
Sbjct: 413 FCLQQPSFAVDTHVWRFCKWLKWVPPKASRDDTYMH--GEVRIPDTLK------------ 458
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGAC 1164
Y LH I GK CG C
Sbjct: 459 ---YGLHQLFIRHGK--------ECGRC 475
>gi|226293223|gb|EEH48643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 519
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 993 HDKMD--SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE----------LH 1040
HD + SVDW+ VR A E+ DA+K G + + IK L+ + E +
Sbjct: 280 HDGVGEGSVDWDKVRQATLEEVYDAMKAGGLGRVKSRYIKRILDMVHEEGVARRNAMGMG 339
Query: 1041 GSI-------------DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVD 1087
G + L L + D+ G+G+K+ CV L L+ F VD
Sbjct: 340 GDVYQEGDGNGHEHILSLNHLHTLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVD 399
Query: 1088 VNVGRIAVRLGWVP 1101
+V R+ LGW+P
Sbjct: 400 THVVRLCKWLGWLP 413
>gi|422618203|ref|ZP_16686902.1| endonuclease III [Pseudomonas syringae pv. japonica str. M301072]
gi|422628829|ref|ZP_16694036.1| endonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
gi|440722818|ref|ZP_20903192.1| endonuclease III [Pseudomonas syringae BRIP34876]
gi|440725610|ref|ZP_20905874.1| endonuclease III [Pseudomonas syringae BRIP34881]
gi|330898582|gb|EGH30001.1| endonuclease III [Pseudomonas syringae pv. japonica str. M301072]
gi|330937552|gb|EGH41493.1| endonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
gi|440360739|gb|ELP97998.1| endonuclease III [Pseudomonas syringae BRIP34876]
gi|440368405|gb|ELQ05441.1| endonuclease III [Pseudomonas syringae BRIP34881]
Length = 212
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLVELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|312128249|ref|YP_003993123.1| hhh-gpd family protein [Caldicellulosiruptor hydrothermalis 108]
gi|311778268|gb|ADQ07754.1| HhH-GPD family protein [Caldicellulosiruptor hydrothermalis 108]
Length = 235
Score = 51.2 bits (121), Expect = 0.004, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + ++++ IK G N A R+KEF N L S DLE L + +++ LL
Sbjct: 74 EGILQTSDEKLSELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLL 132
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + E +
Sbjct: 133 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIE-------------SEKAKYE 179
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
IQ + L LD E H ++ K CK + P C C L C + +
Sbjct: 180 DIQNLVMQNL-ELDTYIFNEFHALIVKHCKERCKSKKPMCKNCCLSAFCIYLS 231
>gi|222528627|ref|YP_002572509.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
gi|222455474|gb|ACM59736.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
Length = 225
Score = 51.2 bits (121), Expect = 0.004, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + + +++ IK G N A R+KEF N L S DLE L + +++ LL
Sbjct: 66 EGIFQTSDEMLSELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLL 124
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G ++ + + L + F VD R+ RLG + + + Y +
Sbjct: 125 SQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLGLIESEKI----------SYNDLQ 174
Query: 1122 KIQMY-LWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I M L P Q LY E H ++ K CK + P C C L+ C ++
Sbjct: 175 AIVMTNLTP------QTQLYNEFHALIVKHCKEICKSKKPICNKCCLKLICNYY 222
>gi|325279570|ref|YP_004252112.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
gi|324311379|gb|ADY31932.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
Length = 212
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAV 1095
L E+ ++ ++ VP D E L + G+G K+ V ++ A PVD +V R++
Sbjct: 90 LHEMAQKLERDFQGKVPEDM--ELLQTLPGVGRKTANVVMAVAFHKPAMPVDTHVFRVSN 147
Query: 1096 RLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK 1155
R+G V P + L+K P + L H+ +I G+ C
Sbjct: 148 RIGLVNNTKTPLETEKQLVKNIPA-----------------EILSTAHHWLILHGRYVCL 190
Query: 1156 KRSPNCGACPLRGECKHFAS 1175
R P C C +R C+ F S
Sbjct: 191 ARKPKCEECGIRQWCRFFQS 210
>gi|291288604|ref|YP_003505420.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
gi|290885764|gb|ADD69464.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
Length = 210
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD ++A IK G + + I LVE HG VP D + LL + G+
Sbjct: 68 ADIEDVAKIIKSTGMYKMKSKNIIGMAKALVENHGG-------EVPQDM--DELLALSGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ VR Q VD +V RI+ R+G L + +K++
Sbjct: 119 GRKTANVVRGNFWQKPGVVVDTHVKRISGRVG---------------LTDNTTPEKVEKD 163
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
L +L +++ + +++I FG+ C RSP CG C + CK++AS
Sbjct: 164 L-EKLIKGEKQC--DWCHRVIYFGREICTARSPKCGICGVSHVCKYYAS 209
>gi|443642650|ref|ZP_21126500.1| Endonuclease III [Pseudomonas syringae pv. syringae B64]
gi|443282667|gb|ELS41672.1| Endonuclease III [Pseudomonas syringae pv. syringae B64]
Length = 212
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELH VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLVELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVERQLMKFVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C + A
Sbjct: 169 ----KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCDYKA 207
>gi|315122204|ref|YP_004062693.1| endonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495606|gb|ADR52205.1| endonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 177
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 22/167 (13%)
Query: 1007 ADESEIADAIKERGQQNII--AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIE 1064
AD + AI E+ QN I G + ++ L ++ E+ +P K E L +
Sbjct: 27 ADTPQKMLAIGEKNLQNHIKTIGIYRRKAKNIISLSHTLINEFDSEIP--KTLEELTRLS 84
Query: 1065 GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQ 1124
G+G K + ++ VD ++ RIA R+G P + P + LL+ P
Sbjct: 85 GIGRKGANVILSMAFGIPTIGVDTHIFRIANRIGLAPGKT-PNQVEQSLLRIIP------ 137
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
QK Y HY ++ G+ CK R P C +C + CK
Sbjct: 138 -----------QKHQYNAHYWLVLHGRYVCKARKPQCQSCVISNICK 173
>gi|415728037|ref|ZP_11471640.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 6119V5]
gi|388065563|gb|EIK88045.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 6119V5]
Length = 223
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
A ++ IK G + A I RL HG V P ++++ L + G
Sbjct: 73 ASVEQVESIIKPLGFYRVKAQHIIALSLRLESAFHG---------VVPSRMED-LTSLPG 122
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ VR + FPVD +V R+ RLGW P K+Y + I+
Sbjct: 123 VGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKP--------KKYANPESIEK 174
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ Y D L +++I G+ C R+P C CPL+ C
Sbjct: 175 EI---TSYFDPADWTNLSHRLILHGRKVCTARNPKCALCPLKTTC 216
>gi|70984374|ref|XP_747701.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
gi|66845328|gb|EAL85663.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
Length = 470
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 32/136 (23%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-------------ELHGSID 1044
SV+W+AVR A ++ +AIK G I + +IK L+ + E GS D
Sbjct: 241 SVNWDAVRQAPLKDVFEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGSSD 300
Query: 1045 L-------------------EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
L L + + L+ G+G K+ CV L LQ F
Sbjct: 301 LMPGEKEYEIACADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPCFA 360
Query: 1086 VDVNVGRIAVRLGWVP 1101
VD ++ RI LGWVP
Sbjct: 361 VDTHIFRICKWLGWVP 376
>gi|159122487|gb|EDP47608.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
Length = 470
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 32/136 (23%)
Query: 998 SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-------------ELHGSID 1044
SV+W+AVR A ++ +AIK G I + +IK L+ + E GS D
Sbjct: 241 SVNWDAVRQAPLKDVFEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGSSD 300
Query: 1045 L-------------------EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
L L + + L+ G+G K+ CV L LQ F
Sbjct: 301 LMPGEKEYEIACADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPCFA 360
Query: 1086 VDVNVGRIAVRLGWVP 1101
VD ++ RI LGWVP
Sbjct: 361 VDTHIFRICKWLGWVP 376
>gi|153815003|ref|ZP_01967671.1| hypothetical protein RUMTOR_01218 [Ruminococcus torques ATCC 27756]
gi|317501555|ref|ZP_07959751.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088583|ref|ZP_08337494.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440472|ref|ZP_08620059.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847571|gb|EDK24489.1| endonuclease III [Ruminococcus torques ATCC 27756]
gi|316897066|gb|EFV19141.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407540|gb|EGG87040.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012917|gb|EGN42808.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
Length = 207
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG+ Q P + L+KE
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYHDASVVVDTHVKRISNRLGFTK-QSDPEKIEQDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P D LY + Q+ITFG+ C R+P CG C L+ C
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARNPKCGECFLKKYC 203
>gi|302349120|ref|YP_003816758.1| endoIII-related endonuclease [Acidilobus saccharovorans 345-15]
gi|302329532|gb|ADL19727.1| predicted EndoIII-related endonuclease [Acidilobus saccharovorans
345-15]
Length = 230
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 1045 LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 1104
+++L + ++V+ LL I G+G K+V+ L + F VD + RIA R G
Sbjct: 112 VDFLEHGDINEVERALLSIRGIGSKTVDVFLSLYRKVPRFAVDTHAKRIAARWG------ 165
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 1164
L ++ +++ L L + + E H +I FG+ +C R+P C C
Sbjct: 166 --------LTRKGASYEEVSGAL---LNFFGPERSDEAHRLLIAFGRAYCTARNPRCSEC 214
Query: 1165 PLRGEC 1170
PLR C
Sbjct: 215 PLRQYC 220
>gi|293400780|ref|ZP_06644925.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305806|gb|EFE47050.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 215
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ A+ E+ I+ G A I+ LVE G + P +KE L
Sbjct: 59 EALASANSKEVEAKIRRIGLYRNKARSIQALSASLVEHFDGQV---------PQSMKE-L 108
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K+ VR + A VD +V RIA RLG + GD + ++ E +
Sbjct: 109 TSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKV----GD-SVEVV-EQKLK 162
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
KI+ W R H+ I FG+ C R+P C CP CK
Sbjct: 163 RKIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|297243033|ref|ZP_06926971.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
gi|296889244|gb|EFH27978.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
Length = 224
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+ + G+G K+ V + FPVD +V R+ RLGW +Q P + I
Sbjct: 122 EDLISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+I Y P K L +++I G+ C R+P C +CPL C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|415709635|ref|ZP_11463260.1| endonuclease III [Gardnerella vaginalis 6420B]
gi|388056307|gb|EIK79183.1| endonuclease III [Gardnerella vaginalis 6420B]
Length = 224
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+ + G+G K+ V + FPVD +V R+ RLGW +Q P + I
Sbjct: 122 EDLISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+I Y P K L +++I G+ C R+P C +CPL C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|365157635|ref|ZP_09353887.1| endonuclease III [Bacillus smithii 7_3_47FAA]
gi|363623160|gb|EHL74286.1| endonuclease III [Bacillus smithii 7_3_47FAA]
Length = 229
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I++ L+E H VP + KE L+++ G+G K+
Sbjct: 73 ELEQDIRSIGLYRTKAKNIQKLCKILIEKHQG-------QVP--ETKEELMELPGVGRKT 123
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P + W
Sbjct: 124 ANVVVSIAFGQPAIAVDTHVERVSKRLGICRWKDSVWEVEQTLMKKVPKEE------WSI 177
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 178 T-----------HHRLIFFGRYHCKAQSPKCEECPLLSLCR 207
>gi|386714544|ref|YP_006180867.1| endonuclease III [Halobacillus halophilus DSM 2266]
gi|384074100|emb|CCG45593.1| endonuclease III [Halobacillus halophilus DSM 2266]
Length = 220
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + IK G A IK+ LV+ VPP KE L + G+G K+
Sbjct: 72 ELQNDIKRIGLYRNKAKNIKKLSQTLVDQFNG-------QVPP--TKEELESLAGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+++ P + W
Sbjct: 123 ANVVASVAFNEPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKEE------WSV 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H++MI FG+ CK + PNC CPL C+
Sbjct: 177 T-----------HHRMIFFGRYHCKAKRPNCEECPLLVLCR 206
>gi|153853551|ref|ZP_01994931.1| hypothetical protein DORLON_00920 [Dorea longicatena DSM 13814]
gi|149753706|gb|EDM63637.1| endonuclease III [Dorea longicatena DSM 13814]
Length = 208
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
E LL + G+G K+ +R ++ H+ + VD +V RI+ RLG Q P + L+KE
Sbjct: 109 EDLLSLAGVGRKTANVIRG-NIYHVPSVVVDTHVKRISNRLGLTKNQD-PDKIEQDLMKE 166
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P D L+ +H +ITFG+ C RSP C C L+ CK +
Sbjct: 167 LPE---------------DHWILWNIH--IITFGRTICSARSPKCEDCFLQKYCKEY 206
>gi|68067789|ref|XP_675828.1| endonuclease III [Plasmodium berghei strain ANKA]
gi|56495233|emb|CAH95547.1| endonuclease iii homologue, putative [Plasmodium berghei]
Length = 246
Score = 51.2 bits (121), Expect = 0.005, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
E L+ + G+G K + + +L +H VD++V RI+ RL WV + E
Sbjct: 133 EELIKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLNWV-----------YTKNE 181
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K++ ++D++ EL++ ++ FG++ CK + P CG C L C+++
Sbjct: 182 LDTQIKLK-------SFVDKELWSELNHLLVGFGQVICKGKKPLCGKCTLTDYCQYY 231
>gi|448346319|ref|ZP_21535205.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
gi|445632908|gb|ELY86114.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
Length = 310
Score = 51.2 bits (121), Expect = 0.005, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 24/194 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A++S +A+ I G N + + + ++E GS ++++ P V+E
Sbjct: 126 ESLASAEQSTLAETISGAGLYNQKSETLIDTAEWVLEEFGSAPAFDAFVKDEGPSIVRET 185
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL + G+G K+ +CV L + + FPVD +V RI R+G P + L ++ P
Sbjct: 186 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVREVLERDVP 245
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
C H I FG+ +C+ R P C ACP+ C+
Sbjct: 246 AAK----------CGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 288
Query: 1175 SAVASARFALPGPS 1188
A+ P +
Sbjct: 289 VFPATGEVVDPAET 302
>gi|371777097|ref|ZP_09483419.1| endonuclease III [Anaerophaga sp. HS1]
Length = 214
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
V PD VKE L + G+G K+ + + Q A VD +V R++ RLG P +
Sbjct: 104 VVPDDVKE-LQKLPGVGRKTANVIASVVYQKPALAVDTHVFRVSARLGLTVNAKTPLETE 162
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L+K YL Q + H+ +I G+ C R P C C L+ C
Sbjct: 163 KQLVK-----------------YLPQDLIPIAHHWLILHGRYVCLARKPKCRQCGLKEWC 205
Query: 1171 KHFA 1174
K++
Sbjct: 206 KYYG 209
>gi|398829286|ref|ZP_10587486.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
gi|398218144|gb|EJN04661.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
Length = 232
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
WEAV A I D I + I E L+ +++ +GS++L+ L + ++ +
Sbjct: 66 SWEAVANASPERINDCIYKITFSQTYCVFIPEALSTIIKRYGSLNLDTLSGMTVEQALHF 125
Query: 1060 LLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G K CV S H+ A VD + R A R + Q K Y
Sbjct: 126 LQQLRGVGPKISACVLNFSTLHMRALVVDTHYLRFAARFQLIKSQ-----------KNYV 174
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMIT-FGKIFCKKRSPNCGACPLRGECKH 1172
++ L P +L T E H+ ++ + FC +P C CPL C +
Sbjct: 175 KNIRVIQRLVPN-SWLASDT--EEHHVLVKQLAQEFCVAGTPRCARCPLSDLCNY 226
>gi|448400249|ref|ZP_21571316.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
gi|445667789|gb|ELZ20429.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
Length = 270
Score = 50.8 bits (120), Expect = 0.005, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A++S +A+ I G N + I + ++E GS ++++ P V+E
Sbjct: 92 ESLAHAEQSTLAETISSAGLYNQKSETIIDTAEWVLEEFGSAAAFDTFVKDEAPAAVRET 151
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL++ G+G K+ +CV L + + FPVD +V RI RLG P + L ++ P
Sbjct: 152 LLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHETVREILERDVP 211
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
C H I FG+ +C R P C ACP+ C
Sbjct: 212 AAK----------CGFG-------HTATIQFGREYCTARKPACLDDPEACPMADLC 250
>gi|227538653|ref|ZP_03968702.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241572|gb|EEI91587.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
Length = 228
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ A E+ I+ N A + N L+E +G + P+++++ L
Sbjct: 63 EALAVASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEV---------PEQIED-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ + G+G K+ + + A VD +V R++ RLG P + L+K
Sbjct: 113 IKLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVK----- 167
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
+L ++T+ H+ +I G+ C R P C CP+ CK++ +
Sbjct: 168 ------------FLPEETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYYET 210
>gi|28871291|ref|NP_793910.1| endonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
gi|213970873|ref|ZP_03398996.1| endonuclease III [Pseudomonas syringae pv. tomato T1]
gi|301383776|ref|ZP_07232194.1| endonuclease III [Pseudomonas syringae pv. tomato Max13]
gi|302059916|ref|ZP_07251457.1| endonuclease III [Pseudomonas syringae pv. tomato K40]
gi|302130515|ref|ZP_07256505.1| endonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422590290|ref|ZP_16664946.1| endonuclease III [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|422657112|ref|ZP_16719555.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M302278]
gi|28854541|gb|AAO57605.1| endonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
gi|213924396|gb|EEB57968.1| endonuclease III [Pseudomonas syringae pv. tomato T1]
gi|330877328|gb|EGH11477.1| endonuclease III [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|331015677|gb|EGH95733.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 212
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+++ IK G N A + E LVELH G + PD +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNGEV---------PD-TREALEALPGVGRKT 121
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + + IA VD ++ R++ R G P K ++K M P+
Sbjct: 122 ANVVLNTAFRQIAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKQLMKFVPK 169
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LD H+ +I G+ C+ R P CG+C + C
Sbjct: 170 NYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|23015472|ref|ZP_00055247.1| COG0177: Predicted EndoIII-related endonuclease [Magnetospirillum
magnetotacticum MS-1]
Length = 211
Score = 50.8 bits (120), Expect = 0.005, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E +A +I+ G A + E RL+ LHG VP D+ L + G+G
Sbjct: 69 EEGLAQSIRTIGLYKTKAKNVIELSRRLLALHGG-------QVPHDRAA--LEALPGVGR 119
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD + R+A R G P K ++++ M
Sbjct: 120 KTANVVLNIAFGEPTIAVDTHCFRVANRTGLAPG------------KTVELVEQALMKAT 167
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P K L H+ +I G+ CK R P CGAC +R C
Sbjct: 168 P------AKWLQHAHHWLILHGRYTCKARKPECGACAVRDLC 203
>gi|307288541|ref|ZP_07568525.1| endonuclease III [Enterococcus faecalis TX0109]
gi|422703006|ref|ZP_16760834.1| endonuclease III [Enterococcus faecalis TX1302]
gi|306500448|gb|EFM69781.1| endonuclease III [Enterococcus faecalis TX0109]
gi|315165565|gb|EFU09582.1| endonuclease III [Enterococcus faecalis TX1302]
Length = 215
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMILFGRYHCLARAPKCEACPLLYMCQ 206
>gi|296242620|ref|YP_003650107.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
gi|296095204|gb|ADG91155.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
Length = 217
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 26/168 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E++I I E G + AG ++E VE G +P E L+ ++G+
Sbjct: 72 ASETDIEAIIGELGLRKR-AGFLRELAQHAVEEFGD-------KIP--NTLEDLMKLKGV 121
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRL-GWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
GL + VR + VD NV R+ R G +P D + + +KI
Sbjct: 122 GLYTANAVRSFAYGMCVPVVDRNVARVLRRFFGLEGEKPAYADREL-----WKFAEKI-- 174
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ E +Y +I G + C R P C CPLR EC +F
Sbjct: 175 --------MPTSACREFNYGLIDLGAMICTSREPQCSRCPLRPECAYF 214
>gi|422653507|ref|ZP_16716272.1| endonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330966555|gb|EGH66815.1| endonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 212
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+++ IK G N A + E LVELH G + PD +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNGEV---------PD-TREALEALPGVGRKT 121
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + + IA VD ++ R++ R G P K ++K M P+
Sbjct: 122 ANVVLNTAFRQIAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKQLMKFVPK 169
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LD H+ +I G+ C+ R P CG+C + C
Sbjct: 170 NYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|114320065|ref|YP_741748.1| HhH-GPD family protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226459|gb|ABI56258.1| HhH-GPD family protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 221
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ + +A+ I+ G N+ A R+ + G L L +++ LL
Sbjct: 66 EAMLDCPQEALAEVIRPSGYFNVKARRLLALCRAWQDAGGEAGLAALDTA---TLRQRLL 122
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G ++ + + L + + F +D RI RLG V P P+
Sbjct: 123 AVHGVGRETADDILLYAFERPVFVIDAYTRRIFARLGLVDGDP----------GYEPLRA 172
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
+ L P D + H Q++ GK C+ R P CG CPL C SA
Sbjct: 173 AFERALGP-----DVALYNDYHAQIVALGKATCRPR-PRCGVCPLADRCPSAESA 221
>gi|121997381|ref|YP_001002168.1| HhH-GPD family protein [Halorhodospira halophila SL1]
gi|121588786|gb|ABM61366.1| HhH-GPD family protein [Halorhodospira halophila SL1]
Length = 234
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+A AI+ G N+ R++ ++ G ++ L+ + ++E LL + G+
Sbjct: 78 ADPEEVATAIRPAGYFNVKTRRLRNLCITYLQ-EGCMEGMQLQRT--EALREKLLAVNGV 134
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G ++ + + L + F VD RI RLGW+ GD L+ ++
Sbjct: 135 GRETADDILLYAFHRPVFVVDAYTRRILQRLGWI-----QGDEGYERLR-----GGVEAA 184
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
L P + ELH Q++ GK C+ +P C CPL
Sbjct: 185 LGP-----NTAAFNELHAQIVALGKDTCRP-TPRCPDCPL 218
>gi|397906310|ref|ZP_10507123.1| Endonuclease III [Caloramator australicus RC3]
gi|397160659|emb|CCJ34460.1| Endonuclease III [Caloramator australicus RC3]
Length = 208
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 1025 IAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAF 1084
I G K ++E I ++ NVP +K+++ L+ + G+G K+ V + A
Sbjct: 76 ICGLYKTKAKNIIEASKIIVEQFNGNVP-NKMED-LIKLPGVGRKTANVVLSNAFGKDAI 133
Query: 1085 PVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHY 1144
VD +V R+A RLG + + L E +M+ I W R H+
Sbjct: 134 AVDTHVFRVANRLGLANAKDV-------LQTEKQLMENIPKSYWSRA-----------HH 175
Query: 1145 QMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+I G+ C R P C C LR CK+FA
Sbjct: 176 WLIWHGRKICTARKPKCDLCKLRDFCKYFA 205
>gi|436842028|ref|YP_007326406.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170934|emb|CCO24305.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 217
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 991 RSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRN 1050
R HD + + +R E ++ + I+ G + A R+ FL+ L + L
Sbjct: 55 RDHDGLTM---QGLRKFSEEKLQELIRPSGFFRMKAARLNNFLDFLSRNSAECITD-LET 110
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
V +++E LL+++G+G ++ + + L +L F VD RI R V ++
Sbjct: 111 VETYELREKLLEVKGIGPETADSILLYALNKPVFVVDAYTRRIFNRHMLVH-----EEID 165
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
H L+E+ MD + D E H ++ K +CKK SP+C CPL
Sbjct: 166 YHELQEF-FMDVLSH---------DVNLFNEYHALIVMTAKNWCKKTSPDCEKCPL 211
>gi|409197998|ref|ZP_11226661.1| endonuclease III [Marinilabilia salmonicolor JCM 21150]
Length = 218
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
V PD +KE L + G+G K+ + + Q A VD +V R++ R+G P D
Sbjct: 104 VVPDDIKE-LQKLPGVGRKTANVIASVVYQKPAMAVDTHVFRVSERIGLTVKAKNPLDAE 162
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L+K YL ++ L H+ +I G+ C R P C C L+ C
Sbjct: 163 MQLVK-----------------YLPEELLPIAHHWLILHGRYVCLARKPKCEKCGLKLWC 205
Query: 1171 KHF 1173
K++
Sbjct: 206 KYY 208
>gi|330995722|ref|ZP_08319620.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329574781|gb|EGG56342.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 222
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 27/181 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A I + ++ N A + LVE + S VP D + L+
Sbjct: 63 EAMAAATPETIYEYVRSVSYPNNKAKHLVGMARMLVENYHS-------EVPSDL--DELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHIHLLKEYPVM 1120
+ G+G K+ ++ + + A VD +V R++ R+G VP P + L++ +P
Sbjct: 114 KLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPATCTTPYSVEKQLVRYFPA- 172
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
+ + H+ +I G+ C R+P C AC L+ C+H+ +A
Sbjct: 173 ----------------PIIPKAHHWLILHGRYTCTARTPKCEACGLKMICRHYLRTHGAA 216
Query: 1181 R 1181
R
Sbjct: 217 R 217
>gi|307594552|ref|YP_003900869.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
gi|307549753|gb|ADN49818.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
Length = 230
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 975 QQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 1034
Q WD++ + + + + + E++ AD + +A+ IK + A R+ +
Sbjct: 53 QTRWDVVHEVLNRLRKLGLNTI-----ESIANADPNYLAEVIKGVNYRFTKAQRLVKLAR 107
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
+ + G LE LR V+++LL+ EG+G ++ + + L +L + P+ R+
Sbjct: 108 NITVIGG---LERLR--LKGDVRDFLLNQEGVGRETADSIMLFALNILTLPISQYTKRVF 162
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
R+ L PG+ +Y + L PR D T +H +IT GK +C
Sbjct: 163 SRV----LGINPGN-------DYDSWKRTLEDLIPR----DLYTYKLVHASVITIGKKYC 207
Query: 1155 KKRSPNCGACPLRGECKH 1172
+P C CPLR C +
Sbjct: 208 LPDNPLCDKCPLRDLCLY 225
>gi|398830894|ref|ZP_10589075.1| endonuclease III [Phyllobacterium sp. YR531]
gi|398213474|gb|EJN00068.1| endonuclease III [Phyllobacterium sp. YR531]
Length = 252
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 27/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + E ++ D I+ G A + L+ +GS V PD ++ L+
Sbjct: 90 EKMLALGEEKVGDYIRTIGLWRNKAKNVITLSQTLINDYGS--------VVPDS-RDELV 140
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V ++ VD ++ RI RLG P + P + L+K P
Sbjct: 141 KLPGVGRKTANVVLSMAFGQATMAVDTHIFRIGNRLGLAPGK-TPEQVEDKLMKIIPA-- 197
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ LY H+ +I G+ CK R P C AC + CK
Sbjct: 198 ---------------EYLYHAHHWLILHGRYTCKARKPECPACIIADICK 232
>gi|255528039|ref|ZP_05394875.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296185709|ref|ZP_06854118.1| endonuclease III [Clostridium carboxidivorans P7]
gi|255508278|gb|EET84682.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296049837|gb|EFG89262.1| endonuclease III [Clostridium carboxidivorans P7]
Length = 212
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD ++E LL + G+G K+ V + A VD +V R++ RLG + P +
Sbjct: 104 PDTMEE-LLKLPGVGRKTANVVLSNAFGVPAIAVDTHVFRVSNRLG-IAKGDTPEQVEKG 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K P +W + H+ +I G++ CK R P+C CPL C++
Sbjct: 162 LMKNVP------RDMWS-----------DTHHYLIWHGRLICKSRKPDCEKCPLAPYCEY 204
Query: 1173 FASAVASA 1180
F+ SA
Sbjct: 205 FSGGDTSA 212
>gi|20093633|ref|NP_613480.1| EndoIII-related endonuclease [Methanopyrus kandleri AV19]
gi|19886502|gb|AAM01410.1| Predicted EndoIII-related endonuclease [Methanopyrus kandleri AV19]
Length = 233
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
++ + +++ G A IKE R+ L +DLE + P ++ + L+ + G+G K+
Sbjct: 87 DLVETLRDAGLYRQKAKMIKECCERI--LADGLDLEEIVQKPTEEARRELMRLPGVGPKT 144
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ V L + H PVD +V R++ RLG KEY + + + P
Sbjct: 145 ADVVLLFAGGHDVCPVDTHVARVSRRLGLTDS------------KEYFEVQEAVHEMVP- 191
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ + H +I FG+ C+ R P C C +R C +
Sbjct: 192 -----EGERGKAHLALIQFGREICRPRKPQCELCFVRRFCPY 228
>gi|448446559|ref|ZP_21590781.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
gi|445683703|gb|ELZ36093.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
Length = 232
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VELHGSIDLEWLRNVPPDKVKE 1058
D+ A+ AD E+ + I+ G + A RI+ L + E G+ L +L + D K
Sbjct: 73 DFAAIEAADHEELRETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
+L +I+G+G K+ V VD +V R++ R G VP H L P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDALDALVP 192
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG--ACPLRGECKH 1172
D+ T Y LH +I G+ C R +C C +C++
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCDNPVCEAYCDCEY 231
>gi|227528843|ref|ZP_03958892.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
gi|227351236|gb|EEJ41527.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
Length = 213
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L + G+G K V AFPVD +V R+A RLG V +P L I
Sbjct: 106 PHTMKE-LTSLAGVGRKVANVVLAECFNIPAFPVDTHVSRVARRLGMV--KPNATVLQIE 162
Query: 1113 -LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
LKE D+ +LD H+ MI FG+ C ++P C CPL CK
Sbjct: 163 KRLKEAVPKDE----------WLDA------HHAMIFFGRYQCTAKNPKCTKCPLLPICK 206
Query: 1172 H 1172
+
Sbjct: 207 Y 207
>gi|167754535|ref|ZP_02426662.1| hypothetical protein CLORAM_00037 [Clostridium ramosum DSM 1402]
gi|237733826|ref|ZP_04564307.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705367|gb|EDS19946.1| endonuclease III [Clostridium ramosum DSM 1402]
gi|229383164|gb|EEO33255.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 220
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EAV A E+ IK G A + + L+E I VP D+ + L
Sbjct: 69 EAVSQASLPELEQDIKTIGLYRNKAKNLLALSHVLIEQFDGI-------VPSDQ--KQLE 119
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR ++ AF VD +V RI+ RLG+ D
Sbjct: 120 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAK------------------RD 161
Query: 1122 KIQMYLWPRLC-YLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ + +LC + + + H+Q I FG+ FCK +P+C C L CK
Sbjct: 162 DNVLTVEKKLCRSIPRNRWNKSHHQFIFFGRYFCKATNPSCTECKLFDMCK 212
>gi|325283633|ref|YP_004256174.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
gi|324315442|gb|ADY26557.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
Length = 227
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 967 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG------ 1020
++N+ Q+ W+ L+ Y WEA A+ EI ++ G
Sbjct: 37 QQNTWAVAQRQWEALKAAYP-------------HWEAALLAEPEEIETVLRGAGGGLACS 83
Query: 1021 QQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ 1080
+ + G L RL E G L +L +PP + + L + G+G ++ + L L
Sbjct: 84 KSRAVWG----ILRRLEEERGRPSLRFLHRLPPAEARTVLQALPGVGQRTASLLLLFHLA 139
Query: 1081 HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY 1140
A VD N+ R+ RL VP PG D+ +++L L D
Sbjct: 140 QPAAAVDSNIERLLHRLEVVP----PG----------WKADRQELWLEGVLP-ADAPLRA 184
Query: 1141 ELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
H + G+ C + +P C AC LR C
Sbjct: 185 AFHRAGVRHGREICTRHAPRCPACVLREWC 214
>gi|365830798|ref|ZP_09372361.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|374627265|ref|ZP_09699672.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
gi|365262808|gb|EHM92680.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|373913288|gb|EHQ45126.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
Length = 213
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EAV A E+ IK G A + + L+E I VP D+ + L
Sbjct: 62 EAVSQASLPELEQDIKTIGLYRNKAKNLLALSHVLIEQFDGI-------VPSDQ--KQLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR ++ AF VD +V RI+ RLG+ D
Sbjct: 113 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAK------------------RD 154
Query: 1122 KIQMYLWPRLC-YLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ + +LC + + + H+Q I FG+ FCK +P+C C L CK
Sbjct: 155 DNVLTVEKKLCRSIPRNRWNKSHHQFIFFGRYFCKATNPSCTECKLVDMCK 205
>gi|223986376|ref|ZP_03636383.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
gi|223961667|gb|EEF66172.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
Length = 226
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A +I D I+ G + A I+ +VE G V P ++E L
Sbjct: 59 EALAEAPLEDIEDCIRRIGLYHNKAKSIQGLARGVVEQFG--------GVMPQTMEE-LT 109
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G KS + + A VD +V R++ RLG P D + + K+ +M
Sbjct: 110 SLPGVGRKSANVIMSVCFGMPAIAVDTHVERVSKRLGLAA----PKDTVLEVEKK--LMR 163
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
K+ W H+ I FG+ FCK ++P C CP C+ + +
Sbjct: 164 KLPKAEWSHA-----------HHLFIFFGRYFCKAKNPQCPDCPFTSFCREYKA 206
>gi|295099302|emb|CBK88391.1| Predicted EndoIII-related endonuclease [Eubacterium cylindroides
T2-87]
Length = 106
Score = 50.8 bits (120), Expect = 0.006, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ + G+G K+ VR ++ +F VD +V RI+ RLG L K Y +
Sbjct: 1 MSLAGVGRKTANVVRSVAFDIPSFAVDTHVDRISKRLG--------------LAKPYDSV 46
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+K++ L ++ D+ H++ I FG+ C R+P C CP CK
Sbjct: 47 EKVEEKLKRKI---DRDRWNRGHHEFIFFGRYLCHSRNPECYRCPFIDICK 94
>gi|160886403|ref|ZP_02067406.1| hypothetical protein BACOVA_04414 [Bacteroides ovatus ATCC 8483]
gi|237723268|ref|ZP_04553749.1| endonuclease III [Bacteroides sp. 2_2_4]
gi|293372757|ref|ZP_06619138.1| endonuclease III [Bacteroides ovatus SD CMC 3f]
gi|298482932|ref|ZP_07001114.1| endonuclease III [Bacteroides sp. D22]
gi|299146883|ref|ZP_07039951.1| endonuclease III [Bacteroides sp. 3_1_23]
gi|383113443|ref|ZP_09934215.1| endonuclease III [Bacteroides sp. D2]
gi|423289569|ref|ZP_17268419.1| endonuclease III [Bacteroides ovatus CL02T12C04]
gi|423298066|ref|ZP_17276125.1| endonuclease III [Bacteroides ovatus CL03T12C18]
gi|156108288|gb|EDO10033.1| endonuclease III [Bacteroides ovatus ATCC 8483]
gi|229447790|gb|EEO53581.1| endonuclease III [Bacteroides sp. 2_2_4]
gi|292632266|gb|EFF50863.1| endonuclease III [Bacteroides ovatus SD CMC 3f]
gi|298270904|gb|EFI12483.1| endonuclease III [Bacteroides sp. D22]
gi|298517374|gb|EFI41255.1| endonuclease III [Bacteroides sp. 3_1_23]
gi|313695612|gb|EFS32447.1| endonuclease III [Bacteroides sp. D2]
gi|392664008|gb|EIY57551.1| endonuclease III [Bacteroides ovatus CL03T12C18]
gi|392667280|gb|EIY60790.1| endonuclease III [Bacteroides ovatus CL02T12C04]
Length = 225
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLED-LIKLPGVGRKTANVIQSVVFKKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|448298656|ref|ZP_21488684.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
gi|445591326|gb|ELY45532.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
Length = 298
Score = 50.8 bits (120), Expect = 0.007, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEYLLDIE 1064
A++SE+A+ I G N + + + ++E GS +++++ P +V+ LL +
Sbjct: 122 AEQSELAETISGAGLYNQKSETLIDTAEWVLEEFGSATAFDDYVKDEDPSEVRATLLSVR 181
Query: 1065 GLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKI 1123
G+G K+ +CV L + + FPVD +V RI RLG P + L ++ P
Sbjct: 182 GVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLERDIPAAK-- 239
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGEC 1170
C H I FG+ +C R P C ACP+ C
Sbjct: 240 --------CGF-------AHTATIQFGREYCTARKPACLEDPDACPMGDLC 275
>gi|438000126|ref|YP_007183859.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451813058|ref|YP_007449511.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339360|gb|AFZ83782.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451779027|gb|AGF49907.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 210
Score = 50.8 bits (120), Expect = 0.007, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L + G+G K+ V ++ VD +V R+A R G + P D+ L+K
Sbjct: 109 REELESLPGVGRKTANVVLNVAFNQPTIAVDTHVFRVANRTG-IAKGKNPLDVEKKLIKN 167
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P +K L+ H+ ++ FG+ C KR+P C C ++ C+++
Sbjct: 168 IP-----------------KKYLHNAHHSLVLFGRYICTKRNPKCDQCTIKNLCEYY 207
>gi|325264606|ref|ZP_08131336.1| endonuclease III [Clostridium sp. D5]
gi|324030268|gb|EGB91553.1| endonuclease III [Clostridium sp. D5]
Length = 208
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG + P + L+KE
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYYEPSVVVDTHVKRISKRLGLTKHED-PEKIEQDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P D LY + Q+ITFG+ C RSP CG C L+ CK +
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARSPKCGECFLQKYCKEY 206
>gi|153808497|ref|ZP_01961165.1| hypothetical protein BACCAC_02791 [Bacteroides caccae ATCC 43185]
gi|423219425|ref|ZP_17205921.1| endonuclease III [Bacteroides caccae CL03T12C61]
gi|149128819|gb|EDM20036.1| endonuclease III [Bacteroides caccae ATCC 43185]
gi|392625320|gb|EIY19389.1| endonuclease III [Bacteroides caccae CL03T12C61]
Length = 225
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNMED-LIKLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELMKNIP-----------------EKLVPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|409417881|ref|ZP_11257900.1| endonuclease III [Pseudomonas sp. HYS]
Length = 212
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E H S VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIEQHES-------RVP--ETREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P + + ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVLE------------VE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KALMKFVPKAYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|336421321|ref|ZP_08601480.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
gi|336001507|gb|EGN31644.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
Length = 208
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG Q P + L+KE
Sbjct: 109 EELTSLAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P D LY + Q+ITFG+ C RSP C C L+ CK +
Sbjct: 168 PK---------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|395795676|ref|ZP_10474979.1| endonuclease III [Pseudomonas sp. Ag1]
gi|421138346|ref|ZP_15598411.1| Endonuclease III/Nth [Pseudomonas fluorescens BBc6R8]
gi|395340136|gb|EJF71974.1| endonuclease III [Pseudomonas sp. Ag1]
gi|404510514|gb|EKA24419.1| Endonuclease III/Nth [Pseudomonas fluorescens BBc6R8]
Length = 212
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E LVELHG VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVELHGG-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKPYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|295690296|ref|YP_003593989.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
gi|295432199|gb|ADG11371.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
Length = 241
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGW 1099
G + L L+ + D+ + L + G+G+K CV S L A VD +V R+A R+G
Sbjct: 106 GWLSLSHLKGLTVDQARWELQALPGVGVKVAACVLNFSDLAMRALVVDSHVDRVAKRIGL 165
Query: 1100 VPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMIT-FGKIFCKKRS 1158
V H M L P D L+ELH+ M G++ C
Sbjct: 166 VGAGDTTHTYHT------------LMGLAPDAWTADD--LFELHWLMKRGLGQMLCPHEG 211
Query: 1159 PNCGACPLRGEC 1170
P CGACP++ C
Sbjct: 212 PKCGACPVKAMC 223
>gi|269129033|ref|YP_003302403.1| endonuclease III [Thermomonospora curvata DSM 43183]
gi|268313991|gb|ACZ00366.1| endonuclease III [Thermomonospora curvata DSM 43183]
Length = 246
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+ I+ G A I + +L E HG PD++++ L+++ G+
Sbjct: 87 ADREELEKIIRPTGFFRAKADNIIKLGQQLCERHGG--------QVPDRMED-LVELAGV 137
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV-MDKIQM 1125
G K+ V + + VD + GR+A R GW + PV +++
Sbjct: 138 GRKTANVVLGNAFEVPGITVDTHFGRLARRFGWTS-------------QTDPVKVEREVA 184
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV----ASAR 1181
L PR K L ++MI G+ C R P CG CPL C F A+A+
Sbjct: 185 ELIPR------KEWTILSHRMIWHGRRICHARRPACGVCPLARLCPSFGEGPTDPEAAAK 238
Query: 1182 FALPGP 1187
GP
Sbjct: 239 LVRTGP 244
>gi|29375731|ref|NP_814885.1| endonuclease III [Enterococcus faecalis V583]
gi|227518409|ref|ZP_03948458.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227552941|ref|ZP_03982990.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229550352|ref|ZP_04439077.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis ATCC
29200]
gi|255973123|ref|ZP_05423709.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255976166|ref|ZP_05426752.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256618739|ref|ZP_05475585.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256762163|ref|ZP_05502743.1| endonuclease III [Enterococcus faecalis T3]
gi|256958651|ref|ZP_05562822.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256962250|ref|ZP_05566421.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256965444|ref|ZP_05569615.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|257077995|ref|ZP_05572356.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|257082883|ref|ZP_05577244.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|257085585|ref|ZP_05579946.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|257086509|ref|ZP_05580870.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|257089566|ref|ZP_05583927.1| endonuclease III [Enterococcus faecalis CH188]
gi|257415773|ref|ZP_05592767.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257418983|ref|ZP_05595977.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257422928|ref|ZP_05599918.1| endonuclease III [Enterococcus faecalis X98]
gi|293383279|ref|ZP_06629194.1| endonuclease III [Enterococcus faecalis R712]
gi|293387564|ref|ZP_06632113.1| endonuclease III [Enterococcus faecalis S613]
gi|294781025|ref|ZP_06746377.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|300859914|ref|ZP_07106002.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|307274543|ref|ZP_07555723.1| endonuclease III [Enterococcus faecalis TX2134]
gi|307278810|ref|ZP_07559873.1| endonuclease III [Enterococcus faecalis TX0860]
gi|312903687|ref|ZP_07762863.1| endonuclease III [Enterococcus faecalis TX0635]
gi|312905786|ref|ZP_07764806.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|312909159|ref|ZP_07768018.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|312951406|ref|ZP_07770304.1| endonuclease III [Enterococcus faecalis TX0102]
gi|384512896|ref|YP_005707989.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|384518260|ref|YP_005705565.1| endonuclease III [Enterococcus faecalis 62]
gi|397699542|ref|YP_006537330.1| endonuclease III [Enterococcus faecalis D32]
gi|421512166|ref|ZP_15958979.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|422689556|ref|ZP_16747665.1| endonuclease III [Enterococcus faecalis TX0630]
gi|422691633|ref|ZP_16749666.1| endonuclease III [Enterococcus faecalis TX0031]
gi|422694151|ref|ZP_16752155.1| endonuclease III [Enterococcus faecalis TX4244]
gi|422700613|ref|ZP_16758459.1| endonuclease III [Enterococcus faecalis TX1342]
gi|422705899|ref|ZP_16763690.1| endonuclease III [Enterococcus faecalis TX0043]
gi|422711028|ref|ZP_16767962.1| endonuclease III [Enterococcus faecalis TX0027]
gi|422712347|ref|ZP_16769117.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|422718091|ref|ZP_16774763.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|422721186|ref|ZP_16777781.1| endonuclease III [Enterococcus faecalis TX0017]
gi|422721893|ref|ZP_16778473.1| endonuclease III [Enterococcus faecalis TX2137]
gi|422726706|ref|ZP_16783150.1| endonuclease III [Enterococcus faecalis TX0312]
gi|422729113|ref|ZP_16785518.1| endonuclease III [Enterococcus faecalis TX0012]
gi|422733017|ref|ZP_16789343.1| endonuclease III [Enterococcus faecalis TX0645]
gi|422734872|ref|ZP_16791154.1| endonuclease III [Enterococcus faecalis TX1341]
gi|422739571|ref|ZP_16794747.1| endonuclease III [Enterococcus faecalis TX2141]
gi|424671493|ref|ZP_18108492.1| endonuclease III [Enterococcus faecalis 599]
gi|424678455|ref|ZP_18115294.1| endonuclease III [Enterococcus faecalis ERV103]
gi|424681894|ref|ZP_18118678.1| endonuclease III [Enterococcus faecalis ERV116]
gi|424685054|ref|ZP_18121760.1| endonuclease III [Enterococcus faecalis ERV129]
gi|424687158|ref|ZP_18123808.1| endonuclease III [Enterococcus faecalis ERV25]
gi|424692115|ref|ZP_18128629.1| endonuclease III [Enterococcus faecalis ERV31]
gi|424693250|ref|ZP_18129696.1| endonuclease III [Enterococcus faecalis ERV37]
gi|424697506|ref|ZP_18133833.1| endonuclease III [Enterococcus faecalis ERV41]
gi|424700671|ref|ZP_18136854.1| endonuclease III [Enterococcus faecalis ERV62]
gi|424703642|ref|ZP_18139775.1| endonuclease III [Enterococcus faecalis ERV63]
gi|424712278|ref|ZP_18144470.1| endonuclease III [Enterococcus faecalis ERV65]
gi|424718347|ref|ZP_18147596.1| endonuclease III [Enterococcus faecalis ERV68]
gi|424721223|ref|ZP_18150317.1| endonuclease III [Enterococcus faecalis ERV72]
gi|424725925|ref|ZP_18154614.1| endonuclease III [Enterococcus faecalis ERV73]
gi|424727389|ref|ZP_18156021.1| endonuclease III [Enterococcus faecalis ERV81]
gi|424739690|ref|ZP_18168107.1| endonuclease III [Enterococcus faecalis ERV85]
gi|424751534|ref|ZP_18179562.1| endonuclease III [Enterococcus faecalis ERV93]
gi|428766664|ref|YP_007152775.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|430360541|ref|ZP_19426330.1| endonuclease III [Enterococcus faecalis OG1X]
gi|430369976|ref|ZP_19428832.1| endonuclease III [Enterococcus faecalis M7]
gi|29343192|gb|AAO80955.1| endonuclease III [Enterococcus faecalis V583]
gi|227074087|gb|EEI12050.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227177911|gb|EEI58883.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229304474|gb|EEN70470.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis ATCC
29200]
gi|255964141|gb|EET96617.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255969038|gb|EET99660.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256598266|gb|EEU17442.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256683414|gb|EEU23109.1| endonuclease III [Enterococcus faecalis T3]
gi|256949147|gb|EEU65779.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256952746|gb|EEU69378.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256955940|gb|EEU72572.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|256986025|gb|EEU73327.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|256990913|gb|EEU78215.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|256993615|gb|EEU80917.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|256994539|gb|EEU81841.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|256998378|gb|EEU84898.1| endonuclease III [Enterococcus faecalis CH188]
gi|257157601|gb|EEU87561.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257160811|gb|EEU90771.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257164752|gb|EEU94712.1| endonuclease III [Enterococcus faecalis X98]
gi|291079302|gb|EFE16666.1| endonuclease III [Enterococcus faecalis R712]
gi|291083074|gb|EFE20037.1| endonuclease III [Enterococcus faecalis S613]
gi|294451971|gb|EFG20421.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|295112731|emb|CBL31368.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Enterococcus sp. 7L76]
gi|300850732|gb|EFK78481.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|306504481|gb|EFM73688.1| endonuclease III [Enterococcus faecalis TX0860]
gi|306508695|gb|EFM77785.1| endonuclease III [Enterococcus faecalis TX2134]
gi|310628125|gb|EFQ11408.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|310630666|gb|EFQ13949.1| endonuclease III [Enterococcus faecalis TX0102]
gi|310633040|gb|EFQ16323.1| endonuclease III [Enterococcus faecalis TX0635]
gi|311290583|gb|EFQ69139.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|315028111|gb|EFT40043.1| endonuclease III [Enterococcus faecalis TX2137]
gi|315031632|gb|EFT43564.1| endonuclease III [Enterococcus faecalis TX0017]
gi|315034925|gb|EFT46857.1| endonuclease III [Enterococcus faecalis TX0027]
gi|315144668|gb|EFT88684.1| endonuclease III [Enterococcus faecalis TX2141]
gi|315148491|gb|EFT92507.1| endonuclease III [Enterococcus faecalis TX4244]
gi|315150361|gb|EFT94377.1| endonuclease III [Enterococcus faecalis TX0012]
gi|315153677|gb|EFT97693.1| endonuclease III [Enterococcus faecalis TX0031]
gi|315156505|gb|EFU00522.1| endonuclease III [Enterococcus faecalis TX0043]
gi|315158331|gb|EFU02348.1| endonuclease III [Enterococcus faecalis TX0312]
gi|315160901|gb|EFU04918.1| endonuclease III [Enterococcus faecalis TX0645]
gi|315168422|gb|EFU12439.1| endonuclease III [Enterococcus faecalis TX1341]
gi|315171005|gb|EFU15022.1| endonuclease III [Enterococcus faecalis TX1342]
gi|315573746|gb|EFU85937.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|315577515|gb|EFU89706.1| endonuclease III [Enterococcus faecalis TX0630]
gi|315582639|gb|EFU94830.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|323480393|gb|ADX79832.1| endonuclease III [Enterococcus faecalis 62]
gi|327534785|gb|AEA93619.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|397336181|gb|AFO43853.1| endonuclease III [Enterococcus faecalis D32]
gi|401674735|gb|EJS81080.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|402350027|gb|EJU84940.1| endonuclease III [Enterococcus faecalis ERV116]
gi|402351433|gb|EJU86317.1| endonuclease III [Enterococcus faecalis ERV103]
gi|402358521|gb|EJU93189.1| endonuclease III [Enterococcus faecalis 599]
gi|402359907|gb|EJU94527.1| endonuclease III [Enterococcus faecalis ERV129]
gi|402360640|gb|EJU95236.1| endonuclease III [Enterococcus faecalis ERV31]
gi|402365539|gb|EJU99958.1| endonuclease III [Enterococcus faecalis ERV25]
gi|402373403|gb|EJV07480.1| endonuclease III [Enterococcus faecalis ERV62]
gi|402374735|gb|EJV08739.1| endonuclease III [Enterococcus faecalis ERV37]
gi|402376056|gb|EJV10026.1| endonuclease III [Enterococcus faecalis ERV41]
gi|402381314|gb|EJV15023.1| endonuclease III [Enterococcus faecalis ERV65]
gi|402381902|gb|EJV15595.1| endonuclease III [Enterococcus faecalis ERV68]
gi|402384517|gb|EJV18069.1| endonuclease III [Enterococcus faecalis ERV63]
gi|402390268|gb|EJV23623.1| endonuclease III [Enterococcus faecalis ERV73]
gi|402391893|gb|EJV25171.1| endonuclease III [Enterococcus faecalis ERV72]
gi|402396860|gb|EJV29904.1| endonuclease III [Enterococcus faecalis ERV81]
gi|402402961|gb|EJV35657.1| endonuclease III [Enterococcus faecalis ERV85]
gi|402405448|gb|EJV38039.1| endonuclease III [Enterococcus faecalis ERV93]
gi|427184837|emb|CCO72061.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|429512818|gb|ELA02414.1| endonuclease III [Enterococcus faecalis OG1X]
gi|429515703|gb|ELA05213.1| endonuclease III [Enterococcus faecalis M7]
Length = 215
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|223477172|ref|YP_002581604.1| Endonuclease III [Thermococcus sp. AM4]
gi|214032398|gb|EEB73228.1| Endonuclease III [Thermococcus sp. AM4]
Length = 239
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
I LE PD + E L+ + G+G K V A PVD +V RI+ RLG P
Sbjct: 108 IILEKYNGKVPDDINE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPP 166
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
+ P +K++ YL R +K +Y +++ M+ G+ CK P C
Sbjct: 167 RVPP--------------EKVEEYL--RELIPKEKWIY-VNHAMVDHGRSICKPIRPKCE 209
Query: 1163 ACPLRGECKHFASAVASARFALPGPSEK 1190
+CPL+ C + V +EK
Sbjct: 210 SCPLKELCPYAKGLVGDEDIKGANKTEK 237
>gi|307268732|ref|ZP_07550100.1| endonuclease III [Enterococcus faecalis TX4248]
gi|306514860|gb|EFM83407.1| endonuclease III [Enterococcus faecalis TX4248]
Length = 215
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVDEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|167758647|ref|ZP_02430774.1| hypothetical protein CLOSCI_00987 [Clostridium scindens ATCC 35704]
gi|167663843|gb|EDS07973.1| endonuclease III [Clostridium scindens ATCC 35704]
Length = 208
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG Q P + L+KE
Sbjct: 109 EELTSLAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P D LY + Q+ITFG+ C RSP C C L+ CK +
Sbjct: 168 PK---------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|229546166|ref|ZP_04434891.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256852805|ref|ZP_05558175.1| endonuclease III [Enterococcus faecalis T8]
gi|307291137|ref|ZP_07571022.1| endonuclease III [Enterococcus faecalis TX0411]
gi|422684523|ref|ZP_16742757.1| endonuclease III [Enterococcus faecalis TX4000]
gi|424759883|ref|ZP_18187541.1| endonuclease III [Enterococcus faecalis R508]
gi|229308690|gb|EEN74677.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256711264|gb|EEU26302.1| endonuclease III [Enterococcus faecalis T8]
gi|306497791|gb|EFM67323.1| endonuclease III [Enterococcus faecalis TX0411]
gi|315030680|gb|EFT42612.1| endonuclease III [Enterococcus faecalis TX4000]
gi|402404286|gb|EJV36916.1| endonuclease III [Enterococcus faecalis R508]
Length = 215
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|373952763|ref|ZP_09612723.1| endonuclease III [Mucilaginibacter paludis DSM 18603]
gi|373889363|gb|EHQ25260.1| endonuclease III [Mucilaginibacter paludis DSM 18603]
Length = 253
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P + E L + G+G K+ + + A VD +V R++ RLG P +
Sbjct: 106 PSDINE-LQKMPGVGRKTANVIASVVYDAPAIAVDTHVFRVSNRLGLTTNANTPLAVEKQ 164
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K YL Q TL H+ +I G+ C RSP C CPL CK+
Sbjct: 165 LVK-----------------YLPQNTLAIAHHWLILHGRYICVARSPKCDICPLTWFCKY 207
Query: 1173 F 1173
+
Sbjct: 208 Y 208
>gi|307595236|ref|YP_003901553.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
gi|307550437|gb|ADN50502.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
Length = 307
Score = 50.4 bits (119), Expect = 0.007, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
Query: 1029 IKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDV 1088
++E ++RL + D P + K YLL I+ L L+ + V+ Q I P+D
Sbjct: 154 VEELIDRLSGMAAYED--------PVRKKAYLL-IKFLVLRGLLKVKQ---QEIKLPIDN 201
Query: 1089 NVGRIAVRLGWVPLQPLPGDL---HIHLLKEYPVMDKIQMY-LWP---RLCYLDQKTLYE 1141
++ RIA RLG V L+ +L +H +E V ++ + W R+ LD L +
Sbjct: 202 HLTRIAYRLGIVKLEDWVLELMRRDVHFSRELDVELRLAVRDAWDAVIRIGKLDPIALDD 261
Query: 1142 LHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
++ FG+ C + P C CPL+G C +A
Sbjct: 262 FLWR---FGRTICVRDKPQCDKCPLKGVCSAYA 291
>gi|423334271|ref|ZP_17312051.1| endonuclease III [Lactobacillus reuteri ATCC 53608]
gi|337728079|emb|CCC03169.1| endonuclease III [Lactobacillus reuteri ATCC 53608]
Length = 213
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L+ + G+G K + V AFPVD +V R+A RL V +P L I
Sbjct: 106 PHTLKE-LMTLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRMV--EPKASVLAI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+K M P +LD H+ MI +G+ C R+P C CPL C
Sbjct: 162 --------EKKLMKTIPPEHWLDA------HHSMIFWGRYVCTARNPKCQTCPLLSLC 205
>gi|333378080|ref|ZP_08469812.1| endonuclease III [Dysgonomonas mossii DSM 22836]
gi|332883585|gb|EGK03866.1| endonuclease III [Dysgonomonas mossii DSM 22836]
Length = 225
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD ++E L I G+G K+ + +++ A PVD +V R++ R+G P
Sbjct: 119 PDTLEE-LESIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKKPAQTERE 177
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K Y+ + L + H+ +I G+ C R P C C L CK+
Sbjct: 178 LIK-----------------YIPSRYLSKAHHWLILHGRYVCLARKPKCEECGLTPFCKY 220
Query: 1173 FAS 1175
F +
Sbjct: 221 FTN 223
>gi|420145504|ref|ZP_14652968.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis CECT
5711]
gi|398402878|gb|EJN56169.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis CECT
5711]
Length = 216
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ + G+G K+ + V + AF VD +V R+ RL VP + ++ ++K P
Sbjct: 112 LMQLPGVGRKTADVVLADAFGIPAFAVDTHVTRVTKRLRMVPQKATVLEIEQRMMKLLPE 171
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LW H++MI FG+ C R+P C CPL C
Sbjct: 172 ------DLW-----------VTAHHRMIYFGRYHCLARAPKCEQCPLLSMC 205
>gi|386874791|ref|ZP_10117017.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
gi|386807414|gb|EIJ66807.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
Length = 218
Score = 50.4 bits (119), Expect = 0.008, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
Query: 1035 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 1094
R++E+ I ++ VP D L+++ G+G K+ CV + + + A PVD++V RI+
Sbjct: 94 RIIEVAKIIHTKYKGKVPDDL--PTLIELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 151
Query: 1095 VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 1154
RLG V D E +M KIQ W +++ + +G+ C
Sbjct: 152 NRLGLV-------DTRNPEETEQELMKKIQKKYW-----------IDINDTFVMYGQNIC 193
Query: 1155 KKRSPNCGACPL 1166
K SP C C +
Sbjct: 194 KPISPMCDVCKI 205
>gi|424814711|ref|ZP_18239889.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339758327|gb|EGQ43584.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 239
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 21/177 (11%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG---SIDLEWLRNVPPDKV 1056
+++ + +D +AD I G A R+K L L E HG +++L ++
Sbjct: 63 NYKEIENSDVGRLADTINPAGLPQTKAQRLKRTLTALRE-HGEKEDYSVDFLGDMEDSNA 121
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E+L I+G+G K+ + PVD +V RI+ R +P H L +
Sbjct: 122 QEWLEQIKGIGPKTASVLLNFHFDADVIPVDTHVERISKRFRLIPFSASNQKAHDLLNES 181
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P H +I GK C R+P CG L+ C +
Sbjct: 182 VP-----------------HDIKNSFHKLVIEHGKNNCTARNPTCGNTKLKKYCSRY 221
>gi|227890756|ref|ZP_04008561.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus salivarius
ATCC 11741]
gi|227867165|gb|EEJ74586.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus salivarius
ATCC 11741]
Length = 222
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D E+A IK G A + E LVE S+ VP K + L+ + G+G
Sbjct: 78 DPKEVAKYIKTIGLYKNKAKYLVECSKMLVENFNSV-------VP--KTHKELMSLSGVG 128
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ + V AF VD +V RI+ RL VP + L+ + P D I+
Sbjct: 129 RKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETERILMSKVPKEDWIKS-- 186
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H++MI +G+ C R+P C CPL C+
Sbjct: 187 ---------------HHRMIFWGRYQCMARAPKCETCPLLEICQ 215
>gi|95929994|ref|ZP_01312734.1| endonuclease III [Desulfuromonas acetoxidans DSM 684]
gi|95133963|gb|EAT15622.1| endonuclease III [Desulfuromonas acetoxidans DSM 684]
Length = 211
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKE 1058
D A AD E+ + I+ G + A I L + G + PD++ +
Sbjct: 64 DVHAYAQADIHEVEEIIRSIGCYRVKAKHIVAAAQLLCQKFSGQV---------PDQLDD 114
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L+ + G+G K+ V + FPVD +V R+A RLGW Q P + L +
Sbjct: 115 -LIQLPGVGRKTANVVLSNAFDKPGFPVDTHVKRVARRLGWTR-QSDPVKIESELCR--- 169
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ LW +L +I G+ CK RSP C CP+ +CK
Sbjct: 170 ---YVEPPLWGHTSHL-----------LIYHGREICKARSPQCERCPVENQCK 208
>gi|448302984|ref|ZP_21492934.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445593991|gb|ELY48158.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 270
Score = 50.4 bits (119), Expect = 0.008, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 992 SHDKM------DSVDW-EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 1044
+HD++ D +D E++ A++S +A+ I G N + I + ++E GS
Sbjct: 75 AHDELMSTYGGDDIDLAESLASAEQSILAETISGAGLYNQKSETIIDTAAWVLEEFGSAA 134
Query: 1045 L--EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVP 1101
++++ P V++ LL + G+G K+ +CV L + + FPVD +V RI R+G P
Sbjct: 135 AFDTFVKDEAPSTVRDTLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAP 194
Query: 1102 LQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ L ++ P C H I FG+ +C R+P C
Sbjct: 195 PDADHEAVRAVLERDVPAAK----------CGFG-------HTASIQFGREYCTARTPAC 237
Query: 1162 ----GACPLRGECKHFASAVASARFALPGPSE 1189
ACP+ C+ V A+ PSE
Sbjct: 238 LEDPDACPMGDICEQV--GVYPETGAVVDPSE 267
>gi|225850162|ref|YP_002730396.1| endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
gi|225646537|gb|ACO04723.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
Length = 219
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E +IA+AI G A IKE ++V+ G PD + E LL ++G+G
Sbjct: 76 EEKIAEAIYPAGFYRNKAKVIKEISGKIVKDFG--------GKVPDSIDE-LLKLKGVGR 126
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V L A VD +V RI+ RLG+V + + + L K+ P
Sbjct: 127 KTANLVVALGYGKPAICVDTHVHRISNRLGFVKTKT-AEETEMALRKKVP---------- 175
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ E++ + FG+ CK SP C CP+ C
Sbjct: 176 -------REYWNEINDLFVAFGQTICKPVSPKCSECPVSSYC 210
>gi|448419852|ref|ZP_21580696.1| endonuclease III [Halosarcina pallida JCM 14848]
gi|445674766|gb|ELZ27303.1| endonuclease III [Halosarcina pallida JCM 14848]
Length = 227
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 36/174 (20%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA AD+ E+AD I N A I+ +VE HG PD + E L
Sbjct: 68 EAFAAADQEELADDIGSITYYNNKAKYIRSAAADIVEKHG--------GEVPDTMSE-LT 118
Query: 1062 DIEGLGLKSVECVRLLSLQHI-----AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
D+ G+G K+ V LQH VD +V R++ RLG + + P + L+
Sbjct: 119 DLAGVGRKTANVV----LQHGHDVVEGIVVDTHVQRLSRRLG-ITEEERPERIEEDLMPV 173
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P D W +L +L I+ G+ C R+P+CGAC L C
Sbjct: 174 VPEED------WQQLTHL-----------FISHGRAVCTARNPDCGACVLEDVC 210
>gi|345880287|ref|ZP_08831842.1| endonuclease III [Prevotella oulorum F0390]
gi|343923641|gb|EGV34327.1| endonuclease III [Prevotella oulorum F0390]
Length = 222
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 29/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
+A+ A +I + IK N A + E LVE G + PD +E L
Sbjct: 63 KAMAAATWEDIFELIKSVSYPNAKAHHLSEMARMLVEQFQGEV---------PD-TREAL 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDLHIHLLKEYPV 1119
+ G+G K+ V+ + VD +V R++ RLG VP P + + LLK P
Sbjct: 113 TLLPGVGRKTANVVQAVWFGKPTLAVDTHVFRVSHRLGLVPATANTPLKVELALLKHIPT 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ + H+ ++ G+ CK + P C CP C
Sbjct: 173 TQ-----------------VSDAHHWILLHGRYICKSQRPQCTVCPFNWFC 206
>gi|253702180|ref|YP_003023369.1| HhH-GPD family protein [Geobacter sp. M21]
gi|251777030|gb|ACT19611.1| HhH-GPD family protein [Geobacter sp. M21]
Length = 228
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL----EWLRNVPPDKVK 1057
EA+R DE +A++I+ G N+ + R+K F+ L+E +GS+D +W+R ++
Sbjct: 70 EALREIDEGRLAESIRPSGFFNVKSARLKGFVEWLLERYGSLDAMFEGDWVR------LR 123
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G ++ + + L + +F VD R+ RLG V + + +
Sbjct: 124 EELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLFSRLGLVREEDDYHQVRALFMDHL 183
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P K+ ++ E H ++ K C+K+ P C CPL C
Sbjct: 184 PA--KVPLF-------------NEYHALIVEQCKRHCRKK-PLCEGCPLSRFC 220
>gi|381210153|ref|ZP_09917224.1| endonuclease III [Lentibacillus sp. Grbi]
Length = 221
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ K+ L+ + G+G K+ V ++ + A VD +V R+A RL + ++ L+
Sbjct: 107 RTKQELMKLAGVGRKTANVVASVAFREPAIAVDTHVERVAKRLAICRWKDSVLEVEQTLM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ P + W + H++MI FG+ CK R+P C CPL C+
Sbjct: 167 KKVPKDE------WA-----------DTHHRMIFFGRYHCKARNPQCPECPLLDLCR 206
>gi|406938283|gb|EKD71549.1| hypothetical protein ACD_46C00163G0006 [uncultured bacterium]
Length = 210
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKER 1019
R +K P ++ D++LL + + + + ++ + A+ E + E+
Sbjct: 12 RFRKNNPHPTTELIYHTDFELLIAVILSAQA-TDKSVNKATGPLFKIANTPEKMLKLGEK 70
Query: 1020 GQQNIIAGRIKEFLNRLVELHGSIDL---EWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 1076
G +N I I + N+ + G+ + ++ NVP D+ E L + G+G K+ +
Sbjct: 71 GLKNYIK-TIGLYTNKAKNIIGACQMLVEKFHSNVPQDR--ESLESLPGVGRKTANVILN 127
Query: 1077 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQ 1136
+ VD ++ R+A R+G + P ++ LLK P K
Sbjct: 128 TCFGQLTIAVDTHIFRVANRIGLAKGKT-PLEVEKQLLKNIPNEFK-------------- 172
Query: 1137 KTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++ H+ +I G+ C R P C C +R +C++
Sbjct: 173 ---HDAHHWLILHGRYVCTARKPKCPTCIIRDDCEY 205
>gi|148543434|ref|YP_001270804.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Lactobacillus reuteri DSM 20016]
gi|184152842|ref|YP_001841183.1| endonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363583|ref|ZP_03847700.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Lactobacillus reuteri MM2-3]
gi|325681777|ref|ZP_08161296.1| endonuclease III [Lactobacillus reuteri MM4-1A]
gi|148530468|gb|ABQ82467.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus reuteri DSM
20016]
gi|183224186|dbj|BAG24703.1| endonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071379|gb|EEI09685.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Lactobacillus reuteri MM2-3]
gi|324978868|gb|EGC15816.1| endonuclease III [Lactobacillus reuteri MM4-1A]
Length = 213
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L+ + G+G K + V AFPVD +V R+A RL V +P L I
Sbjct: 106 PHTLKE-LITLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRMV--EPKASVLAI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+K M P +LD H+ MI +G+ C R+P C CPL C
Sbjct: 162 --------EKKLMKTIPPEHWLDA------HHSMIFWGRYVCTARNPKCQTCPLLSLC 205
>gi|410459338|ref|ZP_11313089.1| endonuclease III [Bacillus azotoformans LMG 9581]
gi|409930314|gb|EKN67315.1| endonuclease III [Bacillus azotoformans LMG 9581]
Length = 217
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A I++ N L+E +G + VP D++ L+ + G+G K+
Sbjct: 72 ELQNDIRSIGLFRNKAKNIQKLCNMLLEEYGGV-------VPKDRLS--LMKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ E +M K+ LW
Sbjct: 123 ANVVMSVAYGIPAIAVDTHVERVSKRLGICRWKDSVLEV------EETLMKKVPEELWS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ H+++I FG+ CK + P C CPL C+
Sbjct: 176 ----------QTHHRLIFFGRYHCKAQRPQCEICPLLDICR 206
>gi|392968671|ref|ZP_10334087.1| endonuclease III [Fibrisoma limi BUZ 3]
gi|387843033|emb|CCH56141.1| endonuclease III [Fibrisoma limi BUZ 3]
Length = 221
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 72/182 (39%), Gaps = 37/182 (20%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
E++ A E+ IK N A + L+E G I P V E L
Sbjct: 63 ESLAAASVEEVLSYIKSVSYPNNKAKHLVGMARLLMERFEGEI---------PSTVDE-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ---PLPGD--LHIHLLK 1115
+ G+G K+ + + VD +V R++ RLG PL PL + L H+ K
Sbjct: 113 QTLPGVGRKTAHVILSIVYNQPTMAVDTHVFRVSHRLGLAPLTATTPLAVEKALVAHIPK 172
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
EY +Y+ H+ +I G+ C RSP C C LR CK++
Sbjct: 173 EY---------------------VYKSHHWLILHGRYVCLARSPKCEVCDLRDFCKYYEK 211
Query: 1176 AV 1177
+V
Sbjct: 212 SV 213
>gi|449298566|gb|EMC94581.1| hypothetical protein BAUCODRAFT_73567 [Baudoinia compniacensis UAMH
10762]
Length = 452
Score = 50.4 bits (119), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 84/229 (36%), Gaps = 54/229 (23%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKER 1019
R T KNS Q L++R G + SVDW+AVR A + E+ AI ER
Sbjct: 162 RLSANTTNKNSSTAFQ---GLVKRF---GTLQEGIGKGSVDWDAVRRAPQKEVFKAI-ER 214
Query: 1020 GQ---------QNIIAGRIKEFLNRLVELHGS---------------------------- 1042
G Q I+ +E R L
Sbjct: 215 GGLADRKSKDIQAILQLAYEENQERKAALTAESANATAVGAEQEAESEKHAEVEKASQNI 274
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
I L+ L + E +L G+G K+ CV L LQ +F VD +V R+ LGWVP
Sbjct: 275 ISLDHLHLLSTSAAIEKMLSYPGIGPKTASCVALFCLQRPSFAVDTHVFRLCQYLGWVPK 334
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGK 1151
+ K P +D+ Y + D+ Y LH +I GK
Sbjct: 335 T---------VKKGQPKVDRNTTYSHCDVRIPDEYK-YPLHQLLIKHGK 373
>gi|440737292|ref|ZP_20916864.1| endonuclease III [Pseudomonas fluorescens BRIP34879]
gi|447915541|ref|YP_007396109.1| endonuclease III [Pseudomonas poae RE*1-1-14]
gi|440382271|gb|ELQ18776.1| endonuclease III [Pseudomonas fluorescens BRIP34879]
gi|445199404|gb|AGE24613.1| endonuclease III [Pseudomonas poae RE*1-1-14]
Length = 212
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E L+ELHG VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLMELHGG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G I K ++K M PR
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVEKQLMKFVPRQ 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 171 YLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|406837577|ref|ZP_11097171.1| endonuclease III [Lactobacillus vini DSM 20605]
Length = 218
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL + G+G K+ + V Q A VD +V R+A RL VP + L+K+ P
Sbjct: 112 LLQLAGVGQKTADVVLAECFQIPAIAVDTHVSRVAKRLAIVPKNANVLQIEHTLMKKLP- 170
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
Q + H++MI +G+ C R P C CPL C
Sbjct: 171 ----------------QSSWIAAHHRMIFWGRYQCMARQPKCSTCPLLEIC 205
>gi|237798780|ref|ZP_04587241.1| endonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021633|gb|EGI01690.1| endonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 212
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
++ IK G N A + E L+ELH VP + +E L + G+G K+
Sbjct: 72 LSGYIKTIGLYNSKAKNVIETCRMLIELHNG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + IA VD ++ R++ R G P K ++K M P+
Sbjct: 123 NVVLNTAFRQIAMAVDTHIFRVSNRTGIAPG------------KNVVEVEKQLMKFVPKN 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C +
Sbjct: 171 YLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|15614261|ref|NP_242564.1| endonuclease III [Bacillus halodurans C-125]
gi|10174315|dbj|BAB05417.1| endonuclease III (DNA repair) [Bacillus halodurans C-125]
Length = 218
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A IK+ L+E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELEQDIRSIGLYRNKAKNIKKLCQSLLEQYGG-------EVPQDR--DELVKLAGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + + L+K+ P MD+ +
Sbjct: 123 ANVVASVAFGVPAIAVDTHVERVSKRLGICRWKDNVTQVEQTLMKKIP-MDEWSIS---- 177
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK ++P C CPL C+
Sbjct: 178 ------------HHRLIFFGRYHCKAQNPQCDICPLLDMCR 206
>gi|229495325|ref|ZP_04389060.1| endonuclease III [Porphyromonas endodontalis ATCC 35406]
gi|229317768|gb|EEN83666.1| endonuclease III [Porphyromonas endodontalis ATCC 35406]
Length = 217
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A + EI IK N A + + R+V+ G ++P + E L+
Sbjct: 63 EAMAQASQEEILALIKSISYPNSKAEHLSKMAQRVVQTFGG-------SIPATR--EELM 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ + + VD +V R++ R+G P D + L++
Sbjct: 114 TLPGVGRKTANVILAVLYNQPTMAVDTHVFRVSERIGLTTRAKTPLDTELTLVR------ 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
Y+ + + + H+ +I G+ C RSP C +C + C++
Sbjct: 168 -----------YIPPELIPKAHHWLILHGRYVCLARSPKCSSCGITSWCRY 207
>gi|406025340|ref|YP_006705641.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404432939|emb|CCM10221.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 212
Score = 50.1 bits (118), Expect = 0.009, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + C E + I+ G N A I N L+ + S VP + L+
Sbjct: 62 EKIVCLGEERLKQYIRSIGLFNHKAKNIIALSNLLINHYNS-------RVPNHF--DALV 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V VD +V R+A R+G L + +
Sbjct: 113 QLPGVGRKTANVVLNCLFNQPTIAVDTHVFRVAKRIG---------------LAKGITPE 157
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
K++ L L +DQK H+ +I G+ CK R PNC CP++ C ++ +
Sbjct: 158 KVEQEL---LAAIDQKWRKHAHHWLILHGRYICKARKPNCTICPIQTYCTYYQKS 209
>gi|347753384|ref|YP_004860949.1| endonuclease III [Bacillus coagulans 36D1]
gi|347585902|gb|AEP02169.1| endonuclease III [Bacillus coagulans 36D1]
Length = 219
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I++ L+E +G R VP + +E L+ + G+G K+
Sbjct: 72 ELQQDIRSIGLYRNKAKNIQKLCRMLIEEYG-------REVP--QTREELMKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG+ + ++ L+K+ P + W
Sbjct: 123 ANVVLSVAFGIPAIAVDTHVERVSKRLGFCRYKDSVLEVEQTLMKKVPKEE------WSI 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H++MI FG+ CK + P C CPL C+
Sbjct: 177 T-----------HHRMIFFGRYHCKAQRPQCEICPLLDLCR 206
>gi|387789483|ref|YP_006254548.1| endonuclease III [Solitalea canadensis DSM 3403]
gi|379652316|gb|AFD05372.1| endonuclease III [Solitalea canadensis DSM 3403]
Length = 217
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P V+E L ++ G+G K+ + + VD +V R+A R+G P
Sbjct: 106 PATVEE-LQEMPGVGRKTANVIASVIYSQPKMAVDTHVFRVAARIGLTTNAKTPLAAEKQ 164
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K P DKI + H+ +I G+ C RSP C CPL CK+
Sbjct: 165 LVKNIP-QDKIHV----------------AHHWLILHGRYICLARSPKCDICPLTSFCKY 207
Query: 1173 FASAV 1177
F V
Sbjct: 208 FEQVV 212
>gi|319790163|ref|YP_004151796.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio ammonificans
HB-1]
gi|317114665|gb|ADU97155.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio ammonificans
HB-1]
Length = 219
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E EIA I G N A +KE LVE +G VP D E LL + G+G
Sbjct: 76 EEEIASLIYPVGFYNRKAKNLKEIARILVEHYGG-------QVPSDL--EELLKLPGVGR 126
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V + VD +V RI RLG+V + P + E+ + +K+ W
Sbjct: 127 KTANLVVTQGFKKPGICVDTHVHRIMNRLGFVKTKT-PEE------TEFALREKLPKEFW 179
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
E++ ++ G+ C+ SP C CP+ CK
Sbjct: 180 -----------IEINDLLVALGQHICRPISPKCSQCPIEHLCK 211
>gi|429205189|ref|ZP_19196466.1| endonuclease III [Lactobacillus saerimneri 30a]
gi|428146261|gb|EKW98500.1| endonuclease III [Lactobacillus saerimneri 30a]
Length = 213
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V AF VD +V RIA RL Q + D + L+ E
Sbjct: 109 REELVKLPGVGRKTANVVLSERFGVPAFAVDTHVSRIAKRL-----QIVAADASVTLI-E 162
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
MD + W LD H+ +I +G+ +C R P+C CPL C +
Sbjct: 163 RKFMDSLPPEKW-----LDA------HHALIFWGRYWCTARQPHCATCPLLNICAY 207
>gi|87312107|ref|ZP_01094213.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
gi|87285203|gb|EAQ77131.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
Length = 221
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+A+ I+ G + A R++ + +V++H S DLE + D ++E LL + G+G ++
Sbjct: 70 ELAEIIRPAGYYRLKAKRLQNLMRYVVDVH-SGDLEAMFACSVDSLREDLLALNGIGPET 128
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L + F VD R+ R GW+ + D H + D+ L P
Sbjct: 129 ADAILLYAGNLPTFVVDTYTSRVLKRHGWIEQE---ADYH-------QIQDQFVSQL-PE 177
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
D E H ++ G C+K +P C CPL
Sbjct: 178 ----DVALFNEYHALLVRVGNGHCRK-TPKCETCPL 208
>gi|126667563|ref|ZP_01738533.1| endonuclease III [Marinobacter sp. ELB17]
gi|126627989|gb|EAZ98616.1| endonuclease III [Marinobacter sp. ELB17]
Length = 212
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 35/220 (15%)
Query: 960 RTKKTTPKKNSDNTVQQDWDLLRRIY------STGEERSHDKMDSVDW--EAVRCADESE 1011
R ++ PK ++ +++LL + G ++ +K+ SV EA+
Sbjct: 12 RLREENPKPVTELNYSSNFELLIAVILSAQATDVGVNKATNKLYSVANTPEAIFALGVDG 71
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+ + IK G N AG + + L++ H S VP + +E L + G+G K+
Sbjct: 72 LKEYIKTIGLFNSKAGNVIKTCRALIDRHAS-------QVP--RTREELEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + IA VD ++ R++ R G P K ++K + L P
Sbjct: 123 NVVLNTAFGQIAMAVDTHIFRVSNRTGIAPG------------KNVLEVEKRLIRLVP-- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
Q+ L + H+ +I G+ C R P CGAC + C+
Sbjct: 169 ----QEFLLDAHHWLILHGRYTCIARKPRCGACLIEDLCE 204
>gi|422299741|ref|ZP_16387298.1| endonuclease III [Pseudomonas avellanae BPIC 631]
gi|407988260|gb|EKG30850.1| endonuclease III [Pseudomonas avellanae BPIC 631]
Length = 212
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
+++ IK G N A + E LVELH G + PD +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRMLVELHNGEV---------PD-TREALEALPGVGRKT 121
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + + IA VD ++ R++ R G P + + ++ L+K P
Sbjct: 122 ANVVLNTAFRQIAMAVDTHIFRVSNRTGIAPGKNVV-EVEKQLMKFVP------------ 168
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L + H+ +I G+ C+ R P CG+C + C
Sbjct: 169 -----NNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|330811337|ref|YP_004355799.1| DNA lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|423698896|ref|ZP_17673386.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
gi|327379445|gb|AEA70795.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996602|gb|EIK57932.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
Length = 212
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPG------------KNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C R P CG+C + C++
Sbjct: 161 KKLMKFVPKEFLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|164687678|ref|ZP_02211706.1| hypothetical protein CLOBAR_01320 [Clostridium bartlettii DSM 16795]
gi|164603452|gb|EDQ96917.1| endonuclease III [Clostridium bartlettii DSM 16795]
Length = 209
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L + G+G K+ + V + H A VD +V R+ R+G V + +
Sbjct: 103 PQTLKE-LTTLPGVGRKTADVVLSNAFNHDAIAVDTHVFRVTNRIGIVNEKNVEK----- 156
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
E+ +MD I W H+ I G+ CK R P C CP++ +C +
Sbjct: 157 --TEFALMDVIPKNRWSHS-----------HHLFIFHGRRMCKARKPECDTCPIKDDCDY 203
Query: 1173 F 1173
+
Sbjct: 204 Y 204
>gi|322418099|ref|YP_004197322.1| HhH-GPD family protein [Geobacter sp. M18]
gi|320124486|gb|ADW12046.1| HhH-GPD family protein [Geobacter sp. M18]
Length = 221
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 26/175 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL----EWLRNVPPDKVK 1057
EA++ +A+ I+ G N+ + R+K F+ L+E HGS+D +W ++
Sbjct: 66 EAIQEIHRDRLAELIRPSGFFNVKSVRLKGFVGWLLERHGSLDAMFRGDW------RALR 119
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
+ L+ + G+G ++ + + L + + +F VD R+ RLG V D H
Sbjct: 120 DELIKVRGVGPETCDSILLYAGEKPSFVVDAYTRRLFSRLGVVKED---DDYH------- 169
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
V +L P D E H ++ K C+K+ P+C CPLR C H
Sbjct: 170 RVRSLFMEHLPP-----DVPLFNEYHALIVEQCKRHCRKK-PSCDGCPLRHVCSH 218
>gi|340358490|ref|ZP_08681007.1| endonuclease III [Actinomyces sp. oral taxon 448 str. F0400]
gi|339886340|gb|EGQ75998.1| endonuclease III [Actinomyces sp. oral taxon 448 str. F0400]
Length = 220
Score = 50.1 bits (118), Expect = 0.010, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D S++ ++ G Q A R L++L G + + VPP V+E L+ + G+G
Sbjct: 78 DRSDLEARLRPLGMQRTRAAR-------LIDLGGELIERFDGAVPP--VREMLVTLPGVG 128
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV----PLQPLPGDLHIHLLKEYPVMDKI 1123
K+ V + A VD +VGR++ RLGW P+Q +++
Sbjct: 129 RKTANVVLGDAFGMPAITVDTHVGRLSRRLGWTTSKDPVQ----------------VERD 172
Query: 1124 QMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
LW + D +++I G+ C+ RSP CG C L
Sbjct: 173 LAALWEPERWTDG------CHRLIEHGRAVCRSRSPRCGQCAL 209
>gi|262409409|ref|ZP_06085952.1| endonuclease III [Bacteroides sp. 2_1_22]
gi|294644946|ref|ZP_06722682.1| endonuclease III [Bacteroides ovatus SD CC 2a]
gi|294807476|ref|ZP_06766278.1| endonuclease III [Bacteroides xylanisolvens SD CC 1b]
gi|345509483|ref|ZP_08789081.1| endonuclease III [Bacteroides sp. D1]
gi|229446132|gb|EEO51923.1| endonuclease III [Bacteroides sp. D1]
gi|262352861|gb|EEZ01958.1| endonuclease III [Bacteroides sp. 2_1_22]
gi|292639759|gb|EFF58041.1| endonuclease III [Bacteroides ovatus SD CC 2a]
gi|294445316|gb|EFG13981.1| endonuclease III [Bacteroides xylanisolvens SD CC 1b]
Length = 225
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLED-LVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|218888239|ref|YP_002437560.1| HhH-GPD family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218759193|gb|ACL10092.1| HhH-GPD family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 223
Score = 50.1 bits (118), Expect = 0.011, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E+E+++ I+ G + A R++ L R ++ D L D ++ LL + G+G
Sbjct: 73 EAELSELIRPAGFFRLKAVRLRNLL-RFLDDACGFDFGVLAGQDLDDLRPRLLKVSGVGP 131
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + V L ++ F VD RI R G VP D+ H L++ MD ++
Sbjct: 132 ETADSVLLYAVGLPTFVVDAYTRRILHRHGMVP-----DDIPYHELRDV-FMDVLEP--- 182
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
D E H ++ K +C+ R+P C CPL C VA
Sbjct: 183 ------DVPLYNEYHALIVRVAKDWCRARAPRCADCPL---CSFLDGGVA 223
>gi|188997187|ref|YP_001931438.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932254|gb|ACD66884.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 215
Score = 50.1 bits (118), Expect = 0.011, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E EI I G A IKE LVE S VP D E LL +G+G
Sbjct: 75 EKEIVKLIYPVGFYRNKAKIIKEISKILVEKFNS-------KVPDDL--ETLLSFKGVGR 125
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V A VDV+V RI+ R+G V + P + L+K P
Sbjct: 126 KTANLVLSEGFGKPAICVDVHVHRISNRIGLVKTKN-PEETEFKLMKILP---------- 174
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+K ++++ ++ FG+ CK P C CP+ C+H
Sbjct: 175 -------KKYWKDINFVLVAFGQTICKPVKPKCKECPIVKYCEH 211
>gi|423298961|ref|ZP_17276986.1| endonuclease III [Bacteroides finegoldii CL09T03C10]
gi|408474310|gb|EKJ92829.1| endonuclease III [Bacteroides finegoldii CL09T03C10]
Length = 225
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLED-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P ++ + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELIKNIP-----------------EELIPIAHHWLILHGRYVCQARTPKCATCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|110635893|ref|YP_676101.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
gi|110286877|gb|ABG64936.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
Length = 268
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 27/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + E ++ + I+ G A + L+ HG VP D+ E L
Sbjct: 95 EKMLALGEEKLGEYIRTIGLWRNKAKNVIALCEALIRDHGG-------QVPEDR--EALT 145
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V ++ H VD ++ RI+ R+ P + P ++ LLK P
Sbjct: 146 KLPGVGRKTANVVLNVAFGHPTMAVDTHIFRISNRILLAPGK-TPEEVEQALLKVIP--- 201
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
Q L H+ +I G+ CK R P+C AC + CK
Sbjct: 202 --------------QHYLLHAHHWLILHGRYVCKARKPDCPACVIADLCK 237
>gi|325969490|ref|YP_004245682.1| iron-sulfur cluster loop [Vulcanisaeta moutnovskia 768-28]
gi|323708693|gb|ADY02180.1| iron-sulfur cluster loop [Vulcanisaeta moutnovskia 768-28]
Length = 307
Score = 50.1 bits (118), Expect = 0.011, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 1029 IKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDV 1088
I+E ++RL + G D P + K YLL I+ L L+ + ++ Q + P+D
Sbjct: 154 IEELIDRLSMMAGYED--------PVRKKAYLL-IKFLVLRGLLKIKP---QEMKLPIDN 201
Query: 1089 NVGRIAVRLGWVPLQPLPGDL---HIHLLKEYPVMDKIQMY-LWP---RLCYLDQKTLYE 1141
++ RIA RLG V L+ +L +HL +E + ++ + W R+ LD + +
Sbjct: 202 HLTRIAYRLGIVRLEDWVLELMRRDMHLSRELDIELRLAVRDAWDAVIRVSKLDPIAIDD 261
Query: 1142 LHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+++ G+ C + P C CPLRG C +A
Sbjct: 262 FLWRL---GRTICIRDKPQCDKCPLRGLCSAYA 291
>gi|225683840|gb|EEH22124.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 451
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 993 HDKMD--SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE----------LH 1040
HD + SVDW+ VR A E+ +A+K G + + IK L+ + E +
Sbjct: 212 HDGVGEGSVDWDKVRQATLEEVYNAMKAGGLGRVKSRYIKRILDMVHEEGVARRNAMGMG 271
Query: 1041 GSI-------------DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVD 1087
G I L L + D+ G+G+K+ CV L L+ F VD
Sbjct: 272 GDIYQEGDGNGHEHILSLNHLHTLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVD 331
Query: 1088 VNVGRIAVRLGWVP 1101
+V R+ LGW+P
Sbjct: 332 THVVRLCKWLGWLP 345
>gi|448358879|ref|ZP_21547553.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
gi|445644559|gb|ELY97572.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
Length = 299
Score = 50.1 bits (118), Expect = 0.011, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 1111
PD V+E LLD+ G+G K+ +CV L + + FPVD +V RI R+G P + ++
Sbjct: 174 PDTVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAEADHEEVRA 233
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLR 1167
L E P C H I FG+ C R P C ACP+
Sbjct: 234 VLEAEVPAAK----------CGFG-------HTATIQFGRECCTARKPACLEDPEACPMA 276
Query: 1168 GEC 1170
C
Sbjct: 277 DIC 279
>gi|296282210|ref|ZP_06860208.1| endonuclease III family protein [Citromicrobium bathyomarinum JL354]
Length = 235
Score = 50.1 bits (118), Expect = 0.011, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WEAV A + + + N+ R+K L LV G++DL L + D +L
Sbjct: 70 WEAVADAPLEALQAQLATQTYPNVAGERLKACLTDLVARRGAVDLSHLEPMETDAAMVWL 129
Query: 1061 LDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+ G+G K + V +L A +D + R+ R+G VP + + ++ P
Sbjct: 130 EQLPGVGRKIAAGVVNTSTLDRKALVLDSHHRRVLQRMGLVPQKADTARAYAAIMPAMPS 189
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
W Y E H M G+ FC+ S CG CP + C
Sbjct: 190 E-------WSAADY------DEHHLLMKEIGRAFCRPASMACGECPAQALC 227
>gi|227544748|ref|ZP_03974797.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Lactobacillus reuteri CF48-3A]
gi|338203728|ref|YP_004649873.1| endonuclease III [Lactobacillus reuteri SD2112]
gi|227185288|gb|EEI65359.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Lactobacillus reuteri CF48-3A]
gi|336448968|gb|AEI57583.1| endonuclease III [Lactobacillus reuteri SD2112]
Length = 213
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L+ + G+G K + V AFPVD +V R+A RL V +P L I
Sbjct: 106 PHTLKE-LMTLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRIV--EPKASVLAI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+K M P +LD H+ MI +G+ C R+P C CPL C
Sbjct: 162 --------EKKLMKTIPPEHWLDA------HHSMIFWGRYVCTARNPKCQTCPLLSLC 205
>gi|212224145|ref|YP_002307381.1| endonuclease III [Thermococcus onnurineus NA1]
gi|212009102|gb|ACJ16484.1| endonuclease III [Thermococcus onnurineus NA1]
Length = 243
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD + E L+ + G+G K V A PVD +V RI+ RLG P + P
Sbjct: 126 PDDIHE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQP------ 178
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
++++ YL R +K +Y +++ M+ GK C+ P C CPLR C +
Sbjct: 179 --------ERVEDYL--RELIPREKWIY-VNHAMVDHGKTICRPIKPRCDECPLRELCPY 227
Query: 1173 FASAVASA 1180
V
Sbjct: 228 SKGLVTDG 235
>gi|395648781|ref|ZP_10436631.1| endonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 212
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKQYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|322437279|ref|YP_004219491.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
gi|321165006|gb|ADW70711.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
Length = 241
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 25/198 (12%)
Query: 984 IYS-----TGEERSHDKMDSV-----DWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 1033
IYS T E+SH M + WE +R A +EI ++ + A +K+ L
Sbjct: 42 IYSLLSSRTKTEQSHQVMRDLRARFGTWENLRDAAVAEIEQTLQIITFPEVKALWLKKDL 101
Query: 1034 NRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGR 1092
+ G + LE+L +K++ +L EG+G K S V +L+ A VD + R
Sbjct: 102 MEITARCGELSLEFLAKYRTNKIRSWLEQFEGVGAKTSAAVVNFSTLRRRALCVDSHHLR 161
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
+ RLG P D I E +M KI W + D +L + H G+
Sbjct: 162 VTQRLGLTPR----ADAAI---TEERLMRKIPAD-WDAIKLDDHHSLIKKH------GQE 207
Query: 1153 FCKKRSPNCGACPLRGEC 1170
C P+C CPL C
Sbjct: 208 LCTFAEPHCRRCPLLDMC 225
>gi|337747107|ref|YP_004641269.1| hypothetical protein KNP414_02839 [Paenibacillus mucilaginosus
KNP414]
gi|379720962|ref|YP_005313093.1| hypothetical protein PM3016_3078 [Paenibacillus mucilaginosus 3016]
gi|386723570|ref|YP_006189896.1| hypothetical protein B2K_15605 [Paenibacillus mucilaginosus K02]
gi|336298296|gb|AEI41399.1| Nth [Paenibacillus mucilaginosus KNP414]
gi|378569634|gb|AFC29944.1| Nth [Paenibacillus mucilaginosus 3016]
gi|384090695|gb|AFH62131.1| hypothetical protein B2K_15605 [Paenibacillus mucilaginosus K02]
Length = 231
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+++ G+G K+ V + A VD +V R++ RLG+ + ++ L+K
Sbjct: 109 EKLVELPGVGRKTANVVVSNAFGVPAIAVDTHVERVSKRLGFAAHKDSVLEVEKKLMKRV 168
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P ++ + H+++I FG+ CK ++P CG CPL C+
Sbjct: 169 P-----------------REEWTDTHHRLIFFGRYHCKAQNPKCGECPLLDLCR 205
>gi|85710083|ref|ZP_01041148.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
gi|85688793|gb|EAQ28797.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
Length = 217
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 27/164 (16%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
++ IA AIK G N I++F L+E H V PD +E L+ + G+G
Sbjct: 73 NDEAIAKAIKPCGLYNNKTKNIRKFCTALIEEHD--------GVVPD-TREGLMSLPGIG 123
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K + V + VD +V R+ R+G L + +K L
Sbjct: 124 RKCADIVMSFTFGKDVIAVDTHVHRVCNRIG---------------LTDAKTAEKTAQQL 168
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
R + L + H+ +I FGK C+ R P C C + C+
Sbjct: 169 EERS---PEWALADGHFWLIQFGKRVCRSRIPKCDICVVSDLCE 209
>gi|340354779|ref|ZP_08677477.1| endonuclease III [Sporosarcina newyorkensis 2681]
gi|339623031|gb|EGQ27540.1| endonuclease III [Sporosarcina newyorkensis 2681]
Length = 215
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAV 1095
L+E HG VP + + ++ + G+G K+ V + A VD +V R+A
Sbjct: 97 LIEEHGG-------EVPASR--DVMMTLPGVGRKTANVVVSNAFGVPALAVDTHVERVAK 147
Query: 1096 RLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCK 1155
RLG + P D+ +++ P M+K W + H+Q+I FG+ CK
Sbjct: 148 RLGMNRWKDRPIDVEEKIMRWTP-MEK-----WT-----------QTHHQIIFFGRYHCK 190
Query: 1156 KRSPNCGACPLRGECK 1171
++PNC CPL C+
Sbjct: 191 AQNPNCPECPLLHLCR 206
>gi|298675584|ref|YP_003727334.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
gi|298288572|gb|ADI74538.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
Length = 203
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 66/165 (40%), Gaps = 29/165 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
DE EI IK G + RIK+ ++ E G + PD + + LL + G
Sbjct: 63 TDEDEIESLIKNVGFYRVKTQRIKQISEMILDEYDGQV---------PDNLND-LLKLPG 112
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM 1125
+G K+ CV + A VD +V RI+ RLG V + P L K P
Sbjct: 113 VGRKTANCVLTYAFSKKAIAVDTHVHRISNRLGLVETKT-PEKTEKDLKKIVP------E 165
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LW ++ L + FG+ C+ SP C C L C
Sbjct: 166 NLWNKINEL-----------FVRFGQNTCRPVSPRCDVCVLNDTC 199
>gi|410090685|ref|ZP_11287273.1| endonuclease III [Pseudomonas viridiflava UASWS0038]
gi|409762058|gb|EKN47094.1| endonuclease III [Pseudomonas viridiflava UASWS0038]
Length = 212
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E H VP + +E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLMERHNG-------EVP--ETREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPG------------KNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M PR LD H+ +I G+ C+ R P CG+C + C +
Sbjct: 161 KQLMKFVPRGYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCDY 205
>gi|393784467|ref|ZP_10372630.1| endonuclease III [Bacteroides salyersiae CL02T12C01]
gi|392665448|gb|EIY58972.1| endonuclease III [Bacteroides salyersiae CL02T12C01]
Length = 215
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHI 1111
PD ++E L+ + G+G K+ ++ + A VD +V R++ R+G V P +
Sbjct: 106 PDTLEE-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVDDTHTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K Y+ +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVK-----------------YIPKKLIPIAHHWLILHGRYICQARTPKCDNCGLQLMCK 207
Query: 1172 HFASA 1176
+F A
Sbjct: 208 YFQEA 212
>gi|152987876|ref|YP_001347018.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452880555|ref|ZP_21957510.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
gi|150963034|gb|ABR85059.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452183029|gb|EME10047.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
Length = 212
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRILIEKHGS-------QVPDNR--EDLE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + VD ++ R+A R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIFRVANRTGIAPG------------KNVLEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K + PR LD H+ +I G+ CK R P CG+C + C++
Sbjct: 161 KKLLKFVPRDYLLDA------HHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|29347081|ref|NP_810584.1| endonuclease III [Bacteroides thetaiotaomicron VPI-5482]
gi|383125310|ref|ZP_09945956.1| endonuclease III [Bacteroides sp. 1_1_6]
gi|29338979|gb|AAO76778.1| endonuclease III [Bacteroides thetaiotaomicron VPI-5482]
gi|251838419|gb|EES66505.1| endonuclease III [Bacteroides sp. 1_1_6]
Length = 225
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD + + L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNMDD-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|336406284|ref|ZP_08586944.1| endonuclease III [Bacteroides sp. 1_1_30]
gi|335935312|gb|EGM97270.1| endonuclease III [Bacteroides sp. 1_1_30]
Length = 225
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD + + L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLDD-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|373451906|ref|ZP_09543824.1| endonuclease III [Eubacterium sp. 3_1_31]
gi|371967338|gb|EHO84809.1| endonuclease III [Eubacterium sp. 3_1_31]
Length = 215
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L + G+G K+ VR + A VD +V RIA RLG + GD +
Sbjct: 102 PQSMKE-LTSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKV----GD-SVE 155
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ E + KI+ W R H+ I FG+ C R+P C CP CK
Sbjct: 156 VV-EQKLKRKIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|423216244|ref|ZP_17202769.1| endonuclease III [Bacteroides xylanisolvens CL03T12C04]
gi|295088002|emb|CBK69525.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Bacteroides xylanisolvens XB1A]
gi|392691095|gb|EIY84346.1| endonuclease III [Bacteroides xylanisolvens CL03T12C04]
Length = 225
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD + + L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLDD-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARAPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|422868162|ref|ZP_16914710.1| endonuclease III [Enterococcus faecalis TX1467]
gi|329576491|gb|EGG58001.1| endonuclease III [Enterococcus faecalis TX1467]
Length = 215
Score = 49.7 bits (117), Expect = 0.013, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVLEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|315640880|ref|ZP_07895977.1| endonuclease III [Enterococcus italicus DSM 15952]
gi|315483358|gb|EFU73857.1| endonuclease III [Enterococcus italicus DSM 15952]
Length = 215
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V + A VD +V RI+ RL L ++ E
Sbjct: 109 REELMSLAGVGRKTANVVLGDAFGVPAIAVDTHVERISKRLRICKLTANVIEV------E 162
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+M KI LW R H+ MI FG+ C R PNC CPL C+
Sbjct: 163 ETLMKKIPENLWIRA-----------HHTMIFFGRYHCTARKPNCAQCPLLDMCQ 206
>gi|312110487|ref|YP_003988803.1| endonuclease III [Geobacillus sp. Y4.1MC1]
gi|336234949|ref|YP_004587565.1| endonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423719504|ref|ZP_17693686.1| endonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311215588|gb|ADP74192.1| endonuclease III [Geobacillus sp. Y4.1MC1]
gi|335361804|gb|AEH47484.1| endonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383367596|gb|EID44873.1| endonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 216
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ I+ G A I++ L+E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIRSIGLYRNKAKNIQKLCAMLIEKYGG-------QVPQDR--DELMKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG+ + ++ L+K+ P
Sbjct: 123 ANVVVSVAFGIPAIAVDTHVERVSKRLGFCRWEDSVLEVEKTLMKKIP------------ 170
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ H++MI FG+ CK +SP C CPL C+
Sbjct: 171 -----KEEWSITHHRMIFFGRYHCKAQSPQCHVCPLLDLCR 206
>gi|418402700|ref|ZP_12976207.1| endonuclease III [Sinorhizobium meliloti CCNWSX0020]
gi|359503357|gb|EHK75912.1| endonuclease III [Sinorhizobium meliloti CCNWSX0020]
Length = 263
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ HLL
Sbjct: 138 RTREELVTLPGVGRKTANVVLSMAFGQPTMAVDTHIFRIANRIRLAPGK-TPDEVEAHLL 196
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ P + L+ H+ +I G+ CK R P C C + CK
Sbjct: 197 RVIP-----------------EHYLFHAHHWLILHGRYVCKARRPECERCVIADLCK 236
>gi|197119883|ref|YP_002140310.1| endonuclease III-like protein [Geobacter bemidjiensis Bem]
gi|197089243|gb|ACH40514.1| endonuclease III-related protein [Geobacter bemidjiensis Bem]
Length = 228
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 40/186 (21%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL----EWLRNVPPDKVK 1057
EA+R DE +A+ I+ G N+ + R+K F+ L E +GS+D +W+ ++
Sbjct: 70 EALREIDEGRLAELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWI------GLR 123
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI------ 1111
E L + G+G ++ + + L + +F VD R+ RLG L D H
Sbjct: 124 EELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLFSRLG---LMREEDDYHRVRALFM 180
Query: 1112 -HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
HL E P+ + E H ++ K C+K+ P C CPL C
Sbjct: 181 DHLPAEVPLFN-------------------EYHALIVEQCKRHCRKK-PLCDGCPLTRFC 220
Query: 1171 KHFASA 1176
A+
Sbjct: 221 TFLAAG 226
>gi|150391360|ref|YP_001321409.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149951222|gb|ABR49750.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 216
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 27/172 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + E E+ IK G N+ + I + L+E HG VP ++ E L+
Sbjct: 67 ERILTLTEVELGQWIKSCGFYNMKSKNILATCHLLMEKHGG-------EVPEER--EALM 117
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V A VD +V R++ RLG + E +M
Sbjct: 118 ALPGVGRKTANVVISNVFGQDAIAVDTHVFRVSNRLGLAHSDNVDDT-------EQDLMK 170
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
I +W + H+ +I G+ CK R P C CPL C H+
Sbjct: 171 SIPKSMWS-----------DAHHWIILHGRRICKARRPLCEECPLTTYCLHY 211
>gi|348684342|gb|EGZ24157.1| hypothetical protein PHYSODRAFT_478985 [Phytophthora sojae]
Length = 278
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 35/192 (18%)
Query: 981 LRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL-VEL 1039
++R++ GE ++ + E + E E+++ +K G + A ++K L +
Sbjct: 99 MQRLHQLGE-----NVEGLTIETLLATSEEELSEVLKPVGFYHRKAQQLKRVAAILRTQF 153
Query: 1040 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLG 1098
HG I P + E L + G+G K + LL+ H+ VD +V R+A RLG
Sbjct: 154 HGDI---------PRSLDE-LQQLPGIGPKIGRVITLLAWGHVDGIVVDTHVHRLAQRLG 203
Query: 1099 WVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
W P D L D I W +L ++ FG+ C +
Sbjct: 204 WASTST-PEDTRREL------EDWIPREHWGKLSL-----------AVVGFGQTVCTAKH 245
Query: 1159 PNCGACPLRGEC 1170
P+C +CPL +C
Sbjct: 246 PSCSSCPLAPKC 257
>gi|294787263|ref|ZP_06752516.1| endonuclease III [Parascardovia denticolens F0305]
gi|294484619|gb|EFG32254.1| endonuclease III [Parascardovia denticolens F0305]
Length = 244
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 22/175 (12%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ A+ SE+A+ I G A N L+ G VP + E L
Sbjct: 92 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 142
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ + + FPVD +V R+ RL W D + + KE V
Sbjct: 143 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHWRSDWNKTKDDPVAIEKE--VTAA 200
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
+ W +L +++I FG+ C R P C CPLR C F +
Sbjct: 201 FEPTEW-----------RDLSHRLIDFGRDTCHARKPECLICPLRDTCPSFGLYI 244
>gi|297569523|ref|YP_003690867.1| HhH-GPD family protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925438|gb|ADH86248.1| HhH-GPD family protein [Desulfurivibrio alkaliphilus AHT2]
Length = 258
Score = 49.7 bits (117), Expect = 0.014, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+R +A+ I+ G N+ A R+ L + + +G + E + + +++ LL
Sbjct: 107 ALRQLPPEVLAELIRPAGYYNLKARRLHNLLACIADGYGRV--ENFLALAANDLRQQLLA 164
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
++G+G ++ + + L + F VD RI R Q LP + H ++E
Sbjct: 165 VKGIGPETADSICLYAAGKPIFVVDAYTHRIFSRH-----QLLPEEADYHAIQE------ 213
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
++ D E H ++ GK FCKKR+P C CPL
Sbjct: 214 ----IFTDALPADPVLYNEYHALIVRLGKEFCKKRNPRCPECPL 253
>gi|336414671|ref|ZP_08595017.1| hypothetical protein HMPREF1017_02125 [Bacteroides ovatus 3_8_47FAA]
gi|335933783|gb|EGM95785.1| hypothetical protein HMPREF1017_02125 [Bacteroides ovatus 3_8_47FAA]
Length = 178
Score = 49.7 bits (117), Expect = 0.014, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + + A VD +V R++ R+G VP P +
Sbjct: 59 PDNLED-LIKLPGVGRKTANVIQSVVFKKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 117
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 118 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 160
Query: 1172 HFAS 1175
+F +
Sbjct: 161 YFCN 164
>gi|333384285|ref|ZP_08475925.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
gi|332826778|gb|EGJ99595.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
Length = 211
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD ++E L I G+G K+ + +++ A PVD +V R++ R+G P
Sbjct: 106 PDSMEE-LETIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKNPEQTERE 164
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K Y+ K L + H+ +I G+ C R P C C L CK
Sbjct: 165 LIK-----------------YIPTKYLSKAHHWLILHGRYICVARKPKCEECGLTPYCKF 207
Query: 1173 FA 1174
F+
Sbjct: 208 FS 209
>gi|300712085|ref|YP_003737899.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|448295774|ref|ZP_21485838.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|299125768|gb|ADJ16107.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|445583873|gb|ELY38202.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
Length = 267
Score = 49.7 bits (117), Expect = 0.014, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 34/182 (18%)
Query: 1002 EAVRCADESEIADAIKERGQQN-------IIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
EA+ A E+A+ I G N A I+E E ++R P+
Sbjct: 90 EALAEAHRDELAETISSAGLYNQKSDVMIAAAEEIREEFGSEAEFDA-----FVRESEPE 144
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
V+ LL+I G+G K+ +CV L S + FPVD +V RI R+G P + + L
Sbjct: 145 TVRSRLLEINGVGPKTADCVLLFSGGRGGVFPVDTHVHRIYRRMGIAPPEADHEAVREVL 204
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGE 1169
++ P +K + H I FG+ FC R P C ACPL
Sbjct: 205 EEQVPA----------------EKCGFG-HTASIQFGREFCSARKPACLDGPEACPLYDC 247
Query: 1170 CK 1171
C+
Sbjct: 248 CE 249
>gi|259480217|tpe|CBF71146.1| TPA: hypothetical base excision DNA repair protein (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 502
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 43/152 (28%)
Query: 993 HDKMD--SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN---------RLVELHG 1041
HD + SV+W+AVR A ++ +AIK G + + IK L+ R + + G
Sbjct: 269 HDGIGKGSVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKG 328
Query: 1042 S--------------------------------IDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
+ L +L +P ++V L+ G+G K
Sbjct: 329 QDTNSDSGKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPK 388
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+ CV L LQ F VD ++ RI L WVP
Sbjct: 389 TAACVLLFCLQRPCFAVDTHIFRICKWLNWVP 420
>gi|15963921|ref|NP_384274.1| endonuclease III protein [Sinorhizobium meliloti 1021]
gi|334318195|ref|YP_004550814.1| endonuclease III [Sinorhizobium meliloti AK83]
gi|384531322|ref|YP_005715410.1| endonuclease III [Sinorhizobium meliloti BL225C]
gi|407722507|ref|YP_006842169.1| endonuclease III [Sinorhizobium meliloti Rm41]
gi|433611957|ref|YP_007188755.1| endonuclease III [Sinorhizobium meliloti GR4]
gi|15073096|emb|CAC41555.1| Probable endonuclease III [Sinorhizobium meliloti 1021]
gi|333813498|gb|AEG06167.1| endonuclease III [Sinorhizobium meliloti BL225C]
gi|334097189|gb|AEG55200.1| endonuclease III [Sinorhizobium meliloti AK83]
gi|407320739|emb|CCM69343.1| Endonuclease III [Sinorhizobium meliloti Rm41]
gi|429550147|gb|AGA05156.1| endonuclease III [Sinorhizobium meliloti GR4]
Length = 263
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ HLL
Sbjct: 138 RTREELVTLPGVGRKTANVVLSMAFGQPTMAVDTHIFRIANRIRLAPGK-TPDEVEAHLL 196
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ P + L+ H+ +I G+ CK R P C C + CK
Sbjct: 197 RVIP-----------------EHYLFHAHHWLILHGRYVCKARRPECERCVIADLCK 236
>gi|104780422|ref|YP_606920.1| endonuclease III [Pseudomonas entomophila L48]
gi|95109409|emb|CAK14109.1| endonuclease III [Pseudomonas entomophila L48]
Length = 212
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+A+ ++D IK G N A + E LVE H VP + +E L
Sbjct: 62 QAIHALGVEGLSDYIKTIGLYNSKAKNVIETCRLLVEQHDG-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + +A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|398850623|ref|ZP_10607324.1| endonuclease III [Pseudomonas sp. GM80]
gi|398248446|gb|EJN33860.1| endonuclease III [Pseudomonas sp. GM80]
Length = 212
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVE HGS VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLVERHGS-------EVP--QTREELEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G P K ++K M P+
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTGIAPG------------KNVVEVEKKLMKFVPKE 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C R P CG+C + C++
Sbjct: 171 FLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|340782445|ref|YP_004749052.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
gi|340556597|gb|AEK58351.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
Length = 238
Score = 49.7 bits (117), Expect = 0.014, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL + G+G ++ + + L +LQ VD R+A RLGW D +
Sbjct: 116 LRRKLLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGW-------ADARVSYA- 167
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
+Q + +L D + ELH ++ GK +C+ R P C CPL +C+H S
Sbjct: 168 ------ALQSRMEAQLRRNDVRGRQELHALIVVHGKTYCRSR-PVCADCPLLRDCRH-GS 219
Query: 1176 AVASARFALPGPSE 1189
V S G E
Sbjct: 220 VVTSGAHHRAGDRE 233
>gi|255021570|ref|ZP_05293613.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
gi|254968958|gb|EET26477.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
Length = 238
Score = 49.7 bits (117), Expect = 0.014, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
++ LL + G+G ++ + + L +LQ VD R+A RLGW D +
Sbjct: 116 LRRKLLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGW-------ADARVSYA- 167
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
+Q + +L D + ELH ++ GK +C+ R P C CPL +C+H +
Sbjct: 168 ------ALQSRMEAQLRRNDVRGRQELHALIVVHGKTYCRSR-PVCADCPLLRDCRHGSV 220
Query: 1176 AVASA 1180
+ A
Sbjct: 221 VTSGA 225
>gi|194467585|ref|ZP_03073572.1| endonuclease III [Lactobacillus reuteri 100-23]
gi|194454621|gb|EDX43518.1| endonuclease III [Lactobacillus reuteri 100-23]
Length = 213
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L+ + G+G K + V AFPVD +V R+A RL V +P L I
Sbjct: 106 PHTLKE-LMTLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRMV--EPKASVLTI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+K M P +LD H+ MI +G+ C R+P C CPL C
Sbjct: 162 --------EKKLMKTIPPEHWLDA------HHSMIFWGRYVCTARNPKCQTCPLLPLC 205
>gi|148652689|ref|YP_001279782.1| endonuclease III [Psychrobacter sp. PRwf-1]
gi|148571773|gb|ABQ93832.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Psychrobacter sp. PRwf-1]
Length = 231
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ E + IK G N A + + LV+ H S V PD K+ L
Sbjct: 79 EAIYALGEEGLKQYIKTIGLYNSKAKNVIKACKDLVDKHNS--------VVPDNRKD-LE 129
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + VD ++ R++ R G + + L E+ +++
Sbjct: 130 ALAGVGRKTANVVLNTAFGQPTMAVDTHIFRVSNRTGLATGKTV-------LAVEHKLIE 182
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ P LD H+ +I G+ C+ R+P CGACP+ EC
Sbjct: 183 RV-----PDDFILDA------HHYLILHGRYTCQARTPKCGACPVYTEC 220
>gi|388470025|ref|ZP_10144234.1| endonuclease III [Pseudomonas synxantha BG33R]
gi|388006722|gb|EIK67988.1| endonuclease III [Pseudomonas synxantha BG33R]
Length = 212
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVELHG VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLVELHGG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G I K ++K M P+
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVEKQLMKFVPKP 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 171 YLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|347542986|ref|YP_004857623.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986022|dbj|BAK81697.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 209
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
DE ++ D IK G + I L E E+ VP K ++ L+ + G+G
Sbjct: 67 DEEKLKDKIKCIGLYRTKSKNIINLCKILKE-------EFNGEVP--KTRDELITLPGVG 117
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
K+ V AF VDV+V R++ R+G + P + L+K I L
Sbjct: 118 RKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSKTPEQTELELMKN------IDESL 170
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
W +C H+ +I G+ C R PNCG C ++ CK++
Sbjct: 171 WT-IC----------HHTIIFHGRRCCTSRKPNCGECKIKEYCKYY 205
>gi|422696813|ref|ZP_16754764.1| endonuclease III [Enterococcus faecalis TX1346]
gi|315174673|gb|EFU18690.1| endonuclease III [Enterococcus faecalis TX1346]
Length = 215
Score = 49.7 bits (117), Expect = 0.015, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDVFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C R+P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|312959249|ref|ZP_07773767.1| endonuclease III [Pseudomonas fluorescens WH6]
gi|311286509|gb|EFQ65072.1| endonuclease III [Pseudomonas fluorescens WH6]
Length = 212
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRLLIEQHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G I K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 161 KQLMKFVPKPYLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|126179382|ref|YP_001047347.1| HhH-GPD family protein [Methanoculleus marisnigri JR1]
gi|125862176|gb|ABN57365.1| DNA-3-methyladenine glycosylase III [Methanoculleus marisnigri JR1]
Length = 226
Score = 49.7 bits (117), Expect = 0.015, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 17/161 (10%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD ++IA I N A RI+EF +R+ D + + +++E LL + G
Sbjct: 70 ADTADIAPLIVPSRYYNQKAERIREF-SRVYVREFRADPAAMAAMETGELRERLLALRGF 128
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G ++ + + L + F VD RI R G++P + DL L E
Sbjct: 129 GKETTDTILLYVCEKPVFVVDAYTRRIFSRYGFLP-EGASYDLTQRLFAEN--------- 178
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
L P D + + H Q++ G CK RSP C CP+R
Sbjct: 179 LEP-----DAELFNDYHAQIVRLGNTICK-RSPLCDRCPIR 213
>gi|398989592|ref|ZP_10692829.1| endonuclease III [Pseudomonas sp. GM24]
gi|399015076|ref|ZP_10717352.1| endonuclease III [Pseudomonas sp. GM16]
gi|398109087|gb|EJL99026.1| endonuclease III [Pseudomonas sp. GM16]
gi|398147214|gb|EJM35929.1| endonuclease III [Pseudomonas sp. GM24]
Length = 212
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ +++ IK G N A + E LVE HGS+ VP + +E L
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHGSV-------VP--QTREELEA 113
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ V + + + VD ++ R++ R G P + + V +K
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNV-----------VEVENK 162
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ ++ P+ LD H+ +I G+ C R P CG+C + C++
Sbjct: 163 LMKFV-PKEFLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|428671556|gb|EKX72474.1| endonuclease III family member protein [Babesia equi]
Length = 666
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+++ E E+ I G N A IK+ + E G PD ++E L+
Sbjct: 513 DSIMEISEEELDTLISRVGFHNTKAKNIKKTATIIHEKFGG--------RVPDTMEE-LV 563
Query: 1062 DIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 1120
+ G+G K V L+ + I VD++V RI+ RLGWV + P + + L + P
Sbjct: 564 SLPGVGPKMANLVIQLAFKRIDGISVDLHVHRISNRLGWVKTK-TPDETRLQLQELIP-- 620
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
QK E+++ ++ FG+ C P C C C
Sbjct: 621 ---------------QKLWAEVNHLLVGFGQTICTAAGPGCATCGANKWC 655
>gi|452963265|gb|EME68342.1| EndoIII-related endonuclease [Magnetospirillum sp. SO-1]
Length = 211
Score = 49.3 bits (116), Expect = 0.016, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ E +A+ I+ G A + E RL+ HG VP D+ L
Sbjct: 62 EAMVALGEEGLAECIRTIGLYKTKARNVVELSRRLLARHGG-------KVPHDRAA--LE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V ++ VD + R+A R G P + + + L++ P
Sbjct: 113 ALPGVGRKTANVVLNIAFGEPTIAVDTHCFRVANRTGLAPGRTVEA-VEEGLMRATPA-- 169
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L H+ +I G+ CK R P+CGAC +R C
Sbjct: 170 ---------------RWLQHAHHWLILHGRYVCKARKPDCGACVVRDLC 203
>gi|386811544|ref|ZP_10098769.1| putative glycosylase [planctomycete KSU-1]
gi|386403814|dbj|GAB61650.1| putative glycosylase [planctomycete KSU-1]
Length = 214
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ + +E++ I+ G N+ A RIK F++ L +G L L ++ LL
Sbjct: 63 EAIHELNVTELSQLIRPSGFFNVKARRIKTFMDWLFSNYGG-SLSRLFAQDLQTLRSELL 121
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
++G+G ++ + + L + F VD RI R G++P E D
Sbjct: 122 AVKGIGPETADSILLYAGNLPTFVVDTYTYRIFSRHGFIP--------------EESSYD 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
+I+ L D K E H ++ GK+FCK + C CPL+
Sbjct: 168 EIKSLFEENLPK-DVKLFNEYHALLVNTGKMFCKPKK-FCEQCPLK 211
>gi|378952456|ref|YP_005209944.1| hypothetical protein PSF113_4559 [Pseudomonas fluorescens F113]
gi|359762470|gb|AEV64549.1| Nth [Pseudomonas fluorescens F113]
Length = 212
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 ETIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + + VD ++ R++ R G P K ++
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPG------------KNVVEVE 160
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K M P+ LD H+ +I G+ C R P CG+C + C++
Sbjct: 161 KKLMKFVPKEFLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|91201716|emb|CAJ74776.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length = 216
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+A+ ++ G N+ A R+K F+N L + +L + + ++E LL I G+G ++
Sbjct: 74 ELAELVRPSGFFNVKAKRVKTFVNWLFSKYEG-NLTAMFHQDCRTLREELLSINGIGPET 132
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L + F +D RI R G VP E D+++ +
Sbjct: 133 ADSILLYAGNMPTFVIDAYTHRIFSRHGLVP--------------EESAYDEMKSFFEDN 178
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
L D K E H ++ GK+FCK + C CPL
Sbjct: 179 LPE-DTKLFNEYHALIVNIGKLFCKPKRV-CEQCPL 212
>gi|344300617|gb|EGW30938.1| hypothetical protein SPAPADRAFT_156404 [Spathaspora passalidarum NRRL
Y-27907]
Length = 329
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 36/199 (18%)
Query: 977 DWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036
++D + +++ E+ + D + EAV ES+I I + G N AG IK L
Sbjct: 115 NFDAMTKLHKAMLEKGYK--DGLCIEAVLATSESDIDKLIAKVGFHNRKAGYIKRSCQML 172
Query: 1037 VELH-GSI--DLEWLRNVPPDKVKE-YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
++ H G I +E + +P K YLL G G+ S VDV++ R
Sbjct: 173 IDSHNGDIPTTIEEITALPGVGPKMGYLLLQAGWGINS------------GIGVDVHLHR 220
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW-PRLCYLDQKTLYELHYQMITFGK 1151
+A GWV + P ++++ W PR + D L M+ FG+
Sbjct: 221 LAQMWGWVSKKATT-----------PEKARLELEDWLPRQYWKDVNPL------MVGFGQ 263
Query: 1152 IFCKKRSPNCGACPLRGEC 1170
+ C R+ NC C L C
Sbjct: 264 VVCGSRAKNCDVCSLNTMC 282
>gi|448337176|ref|ZP_21526258.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
gi|445626522|gb|ELY79865.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
Length = 284
Score = 49.3 bits (116), Expect = 0.017, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 24/194 (12%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL--EWLRNVPPDKVKEY 1059
E++ A+ + +A+ I G N + + + ++E GS ++++ P V+E
Sbjct: 100 ESLASAERATLAETISGAGLYNQKSETLIDTAEWVLEEFGSASAFDTFVKDEEPSVVRET 159
Query: 1060 LLDIEGLGLKSVECVRLLS-LQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL + G+G K+ +CV L + + FPVD +V RI R+G P + L ++ P
Sbjct: 160 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVREVLERDVP 219
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC----GACPLRGECKHFA 1174
C H I FG+ +C+ R P C ACP+ C+
Sbjct: 220 AAK----------CGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 262
Query: 1175 SAVASARFALPGPS 1188
A+ P +
Sbjct: 263 VFPATGEVVDPAET 276
>gi|254168132|ref|ZP_04874979.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|197622898|gb|EDY35466.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
Length = 211
Score = 49.3 bits (116), Expect = 0.018, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD +++ LL + G+G K+ V VD +V RI+ RLGWV + P +
Sbjct: 104 PDNLED-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K P +K +++ ++ FG+ C+ +P C CP++ CK+
Sbjct: 162 LMKVLP-----------------KKYWKDINELLVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 1173 F 1173
+
Sbjct: 205 Y 205
>gi|375084054|ref|ZP_09731064.1| endonuclease III [Thermococcus litoralis DSM 5473]
gi|374741220|gb|EHR77648.1| endonuclease III [Thermococcus litoralis DSM 5473]
Length = 237
Score = 49.3 bits (116), Expect = 0.018, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PDK++E L+ + G+G K V PVD +V RI+ RLG P + P + +
Sbjct: 125 PDKIEE-LMKLPGIGRKCANIVLAYGFGKQTIPVDTHVNRISKRLGLAPPKVSPEKVEEY 183
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L + P LW +Y +++ M+ GK CK +P C CPL+ C +
Sbjct: 184 LKQLIP------KDLW----------IY-VNHAMVDHGKRICKPINPKCTECPLQDLCPY 226
>gi|154505234|ref|ZP_02041972.1| hypothetical protein RUMGNA_02748 [Ruminococcus gnavus ATCC 29149]
gi|336433960|ref|ZP_08613767.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794432|gb|EDN76852.1| endonuclease III [Ruminococcus gnavus ATCC 29149]
gi|336014865|gb|EGN44696.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
Length = 208
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ +R + VD +V RI+ RLG + P + L+KE
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYHDPSVVVDTHVKRISRRLGLTKNED-PEKIETDLMKEL 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P D LY + Q+ITFG+ C RSP C C L+ CK F
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARSPKCEQCFLQKYCKEF 206
>gi|67540934|ref|XP_664241.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
gi|40738976|gb|EAA58166.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
Length = 1085
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 43/152 (28%)
Query: 993 HDKMD--SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN---------RLVELHG 1041
HD + SV+W+AVR A ++ +AIK G + + IK L+ R + + G
Sbjct: 852 HDGIGKGSVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKG 911
Query: 1042 S--------------------------------IDLEWLRNVPPDKVKEYLLDIEGLGLK 1069
+ L +L +P ++V L+ G+G K
Sbjct: 912 QDTNSDSGKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPK 971
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+ CV L LQ F VD ++ RI L WVP
Sbjct: 972 TAACVLLFCLQRPCFAVDTHIFRICKWLNWVP 1003
>gi|433773185|ref|YP_007303652.1| endonuclease III [Mesorhizobium australicum WSM2073]
gi|433665200|gb|AGB44276.1| endonuclease III [Mesorhizobium australicum WSM2073]
Length = 270
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E+++ D I+ G A + L+ HG VP D+ + L+ + G+G
Sbjct: 107 ETKVGDHIRTIGLWRNKAKNVIALSQALIRDHGG-------EVPDDR--DELVKLPGVGR 157
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RI RLG P + P + LLK P
Sbjct: 158 KTANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGK-TPEQVEQGLLKIIP---------- 206
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ + H+ +I G+ CK R P+C AC + CK
Sbjct: 207 -------DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|424897115|ref|ZP_18320689.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393181342|gb|EJC81381.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 260
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+K
Sbjct: 139 REELVKLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGK-TPDEVEARLMKV 197
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P Q LY H+ +I G+ CK R P C C + CK
Sbjct: 198 IP-----------------QHYLYHAHHWLILHGRYTCKARRPECERCVIADLCK 235
>gi|333367814|ref|ZP_08460048.1| endonuclease III [Psychrobacter sp. 1501(2011)]
gi|332978351|gb|EGK15076.1| endonuclease III [Psychrobacter sp. 1501(2011)]
Length = 231
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ E + D IK G N A + + L+E H S PD K+ L
Sbjct: 79 EAIYALGEEGLKDYIKTIGLYNSKAKNVIKACKDLIEKHNS--------QVPDNRKD-LE 129
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + VD ++ R++ R G + + L E +++
Sbjct: 130 ALAGVGRKTANVVLNTAFGQPTMAVDTHIFRVSNRTGLATGKTV-------LAVEQKLVE 182
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+I P LD H+ +I G+ C+ R+P CGACP+ EC
Sbjct: 183 RI-----PEDYILDA------HHYLILHGRYTCQARTPKCGACPVYEEC 220
>gi|281423216|ref|ZP_06254129.1| endonuclease III [Prevotella oris F0302]
gi|281402552|gb|EFB33383.1| endonuclease III [Prevotella oris F0302]
Length = 229
Score = 49.3 bits (116), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 29/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ AD +I IK N A + E LVE +G + PD + L
Sbjct: 63 EAMAQADWEDIFQLIKSVSYPNSKAHHLSEMAKILVERFNGEV---------PDNTDD-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPV 1119
+ G+G K+ V+ + VD +V R++ RLG VP P + + L+K P
Sbjct: 113 TQLPGVGRKTANVVQAVWFGKPTLAVDTHVYRVSHRLGLVPETANTPLKVELELMKYIPK 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D + H+ ++ G+ CK + P C CP C
Sbjct: 173 AD-----------------VGNAHHWLLLHGRYICKSQKPQCQDCPFNTFC 206
>gi|379023259|ref|YP_005299920.1| endonuclease III [Rickettsia canadensis str. CA410]
gi|376324197|gb|AFB21438.1| endonuclease III [Rickettsia canadensis str. CA410]
Length = 209
Score = 48.9 bits (115), Expect = 0.020, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
N P+ KE L+ + G+G K+ V VD +V R+A R+G
Sbjct: 102 NTVPNSFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG----------- 149
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
L + + ++ L L L++K L H+ +I G+ CK R P+C CP++
Sbjct: 150 ----LAQGSTPEVVEKEL---LQILNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKY 202
Query: 1170 CKHFASA 1176
C+++ +A
Sbjct: 203 CEYYLNA 209
>gi|254168035|ref|ZP_04874883.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289596043|ref|YP_003482739.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
gi|197623078|gb|EDY35645.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289533830|gb|ADD08177.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
Length = 211
Score = 48.9 bits (115), Expect = 0.021, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD ++E LL + G+G K+ V VD +V RI+ RLGWV + P +
Sbjct: 104 PDNLEE-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L+K L +K +++ ++ FG+ C+ +P C CP++ CK+
Sbjct: 162 LMK-----------------VLLKKYWKDINELLVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 1173 F 1173
+
Sbjct: 205 Y 205
>gi|384538044|ref|YP_005722129.1| endonuclease III protein [Sinorhizobium meliloti SM11]
gi|336034935|gb|AEH80867.1| endonuclease III protein [Sinorhizobium meliloti SM11]
Length = 280
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ HLL
Sbjct: 155 RTREELVTLPGVGRKTANVVLSMAFGQPTMAVDTHIFRIANRIRLAPGK-TPDEVEAHLL 213
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ P + L+ H+ +I G+ CK R P C C + CK
Sbjct: 214 RVIP-----------------EHYLFHAHHWLILHGRYVCKARRPECERCVIADLCK 253
>gi|336114200|ref|YP_004568967.1| endonuclease III [Bacillus coagulans 2-6]
gi|335367630|gb|AEH53581.1| endonuclease III [Bacillus coagulans 2-6]
Length = 219
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
E+ R VP + +E L+ + G+G K+ V ++ A VD +V R++ RLG+ +
Sbjct: 100 EYGREVP--QTREELMKLPGVGRKTANVVLSVAFGIPAIAVDTHVERVSKRLGFCRYKDS 157
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACP 1165
++ L+K+ P + W H++MI FG+ CK + P C CP
Sbjct: 158 VLEVEQTLMKKVPKEE------WSIT-----------HHRMIFFGRYHCKAQRPQCEICP 200
Query: 1166 LRGECK 1171
L C+
Sbjct: 201 LLDLCR 206
>gi|153956018|ref|YP_001396783.1| hypothetical protein CKL_3410 [Clostridium kluyveri DSM 555]
gi|219856358|ref|YP_002473480.1| hypothetical protein CKR_3015 [Clostridium kluyveri NBRC 12016]
gi|146348876|gb|EDK35412.1| Hypothetical protein CKL_3410 [Clostridium kluyveri DSM 555]
gi|219570082|dbj|BAH08066.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 219
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E E+ + IK G + I E ++E H VP K E L + G+G
Sbjct: 69 EEELGEKIKSCGFFRSKSKHILEASRVILESHKG-------EVP--KTMEELTKLSGVGR 119
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V + A VD +V R++ RLG + + P + L+K P
Sbjct: 120 KTANVVLSNAFGIPAIAVDTHVFRVSNRLG-IAIGNTPDKVEKELMKNIP---------- 168
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ + H+ +I G++ CK R P+C CPL C++F
Sbjct: 169 -------ESMWSDTHHYLIWHGRLICKSRKPDCENCPLVPWCQYF 206
>gi|123505745|ref|XP_001329048.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121911998|gb|EAY16825.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 238
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 36/178 (20%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD + + IK G AG I E I E + P +KE L G+
Sbjct: 84 ADYDVVLECIKSVGFAKKKAGYIIEA--------AKICHEKYNDDIPKTLKE-LTSFNGV 134
Query: 1067 GLKSVECVRLLSLQH-----IAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
G+K + L++ H I VDV+V RI+ LGWV + P D + L K P
Sbjct: 135 GVK----MGTLAMAHCWGEQIGIGVDVHVHRISNLLGWVKTKK-PDDTELALQKILP--- 186
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVAS 1179
+W E+++ ++ FG+ C + P C CP++ C AS
Sbjct: 187 ---KEIWS-----------EVNHTLVGFGQTICDAKKPKCDECPIKDTCPALQRGSAS 230
>gi|383319791|ref|YP_005380632.1| hypothetical protein Mtc_1360 [Methanocella conradii HZ254]
gi|379321161|gb|AFD00114.1| hypothetical protein Mtc_1360 [Methanocella conradii HZ254]
Length = 282
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL IEG+G K+ +CV L S PVD +V R+ RLG VP + L++E P
Sbjct: 8 LLSIEGVGPKTADCVLLFSCGRDVIPVDTHVFRVTKRLGMVPEDASHEEARRILMEEIPP 67
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K +H +I G+ CK R P C L C +
Sbjct: 68 GMK-----------------GSVHVCLIKLGREICKARGPKHNICFLLDLCDY 103
>gi|312870016|ref|ZP_07730153.1| endonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885775|ref|ZP_12529926.1| endonuclease III [Lactobacillus oris F0423]
gi|311094413|gb|EFQ52720.1| endonuclease III [Lactobacillus oris PB013-T2-3]
gi|341594694|gb|EGS37378.1| endonuclease III [Lactobacillus oris F0423]
Length = 213
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P +KE L + G+G K + V AFPVD +V R+A RL VP P L I
Sbjct: 106 PQTLKE-LTSLPGVGRKVADVVLAECFTIPAFPVDTHVSRVARRLAMVP--PKASLLAI- 161
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
E +M+ + P +LD H+ MI +G+ C R+P C CPL C
Sbjct: 162 ---EKKLMEAV-----PEDKWLDA------HHSMIFWGRYRCMARNPRCSDCPLLPMC 205
>gi|14520880|ref|NP_126355.1| endonuclease III [Pyrococcus abyssi GE5]
gi|5458097|emb|CAB49586.1| nth endonuclease III [Pyrococcus abyssi GE5]
gi|380741424|tpe|CCE70058.1| TPA: endonuclease III [Pyrococcus abyssi GE5]
Length = 222
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
I LE + PDK +E L+ + G+G K V A PVD +V RI+ RLG P
Sbjct: 102 IILEKYKGRVPDKFEE-LIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPW 160
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
P ++ LKE L PR ++ +Y +++ M+ GK C+ P C
Sbjct: 161 DASPEEVE-ERLKE----------LIPR-----EEWIY-VNHAMVDHGKSVCRPIKPRCD 203
Query: 1163 ACPLRGEC 1170
CPL+ C
Sbjct: 204 ECPLKELC 211
>gi|224026016|ref|ZP_03644382.1| hypothetical protein BACCOPRO_02769 [Bacteroides coprophilus DSM
18228]
gi|224019252|gb|EEF77250.1| hypothetical protein BACCOPRO_02769 [Bacteroides coprophilus DSM
18228]
Length = 216
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP---LQPLPGDL 1109
PD + E L+ + G+G K+ ++ + A VD +V R++ R+G VP PL +
Sbjct: 106 PDTL-EQLVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPQTCTTPLATEK 164
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ L+K Y+ ++ + H+ +I G+ C RSP C +C L G
Sbjct: 165 Y--LIK-----------------YIPEELIPTAHHWLILHGRYVCTARSPKCESCGLNGL 205
Query: 1170 CK 1171
CK
Sbjct: 206 CK 207
>gi|332157727|ref|YP_004423006.1| endonuclease III [Pyrococcus sp. NA2]
gi|331033190|gb|AEC51002.1| endonuclease III [Pyrococcus sp. NA2]
Length = 220
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PDK E LL + G+G K V A PVD +V RI+ RLG P P ++
Sbjct: 112 PDKFDE-LLKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEER 170
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L L PR ++ +Y +++ M+ GK C+ P C CPLR C
Sbjct: 171 LKS-----------LIPR-----EEWIY-VNHAMVDHGKRICRPVEPRCNECPLRDLC 211
>gi|289192102|ref|YP_003458043.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
gi|288938552|gb|ADC69307.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
Length = 222
Score = 48.9 bits (115), Expect = 0.022, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 999 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 1058
+D E + DE ++ + IK G N+ A R+K +V+ +G+ + + ++
Sbjct: 62 LDEEKILNVDEDKLKELIKPAGFYNLKAKRLKNVTKFIVDNYGNTEEMAKTDKDTLTLRA 121
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL I G+G ++ + + L +L +F VD R+ RLG ++ E
Sbjct: 122 ELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLG--------------IINEKA 167
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
D+I+ ++ + D + E H ++ K FC+K+ P C CP+
Sbjct: 168 KYDEIKE-IFEKSLPKDLEIYKEYHALIVEHCKKFCRKK-PLCDNCPI 213
>gi|337266339|ref|YP_004610394.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
gi|336026649|gb|AEH86300.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 266
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E+++ D I+ G A + L+ HG VP D+ + L+ + G+G
Sbjct: 107 EAKVGDHIRTIGLWRNKAKNVIALSEALIRDHGG-------AVPDDR--DELVKLPGVGR 157
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RI RLG P + P + LLK P
Sbjct: 158 KTANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGK-TPEQVEHGLLKIIP---------- 206
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ + H+ +I G+ CK R P+C AC + CK
Sbjct: 207 -------DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|383787605|ref|YP_005472174.1| putative endonuclease III-like protein [Fervidobacterium pennivorans
DSM 9078]
gi|383110452|gb|AFG36055.1| putative endonuclease III-like protein [Fervidobacterium pennivorans
DSM 9078]
Length = 315
Score = 48.9 bits (115), Expect = 0.022, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
EI+ IK G N+ A R+K L L + DLE ++ +++++ LL ++G+G ++
Sbjct: 169 EISFLIKPAGFFNVKAQRLKNLLTWLKSY--NFDLEKIKTKSIEEIRDELLSVKGIGKET 226
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L +L+ F VD R+ RL + LKEY + +PR
Sbjct: 227 ADSIILYALELPVFVVDAYTKRLLDRLLGIK------------LKEYDEYRLLFEKTYPR 274
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L Q E H ++ K C+ +P C CP+ CK+
Sbjct: 275 DVALYQ----EFHGLIVEHAKALCRT-NPLCATCPVE-SCKY 310
>gi|163785187|ref|ZP_02179872.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159879544|gb|EDP73363.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 48.9 bits (115), Expect = 0.022, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + E +IA+ I G A IK+ I LE PD + E LL
Sbjct: 68 EEISKLSEEKIAELIYPAGFYKNKAKTIKDI--------SKIILEKYNGKVPDTL-EKLL 118
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G K+ V A VD++V RI+ RLG+V + E+ +M+
Sbjct: 119 KFKGVGRKTANLVLSEGFNKPAICVDIHVHRISNRLGFVKTKTPEK-------TEFALME 171
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ W ++ L ++ FG+ CK SP C CP+ CK
Sbjct: 172 KLPEKYWNKINKL-----------LVGFGQTICKPVSPYCSKCPVENLCK 210
>gi|296109162|ref|YP_003616111.1| HhH-GPD family protein [methanocaldococcus infernus ME]
gi|295433976|gb|ADG13147.1| HhH-GPD family protein [Methanocaldococcus infernus ME]
Length = 220
Score = 48.9 bits (115), Expect = 0.022, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 1054
K D +D E + DE E+ + I++ G A +KE +V +GS D +
Sbjct: 49 KRDLIDEEKILKIDEDELINIIRKVGYYKRKARALKELTGFIVNNYGSTDEMAKSDESLI 108
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
++E LL I+G+G ++ + + L +L F V+ R L G L+I
Sbjct: 109 SLREKLLSIKGIGKETADSILLYALDRETFVVNAYTKR------------LFGRLNIIHE 156
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K+Y + + PR D K E + ++ K C+K P C CPL+ C +
Sbjct: 157 KDYEKIKRFFESQIPR----DLKIYKEYNALIVEHCKRACRK-VPKCLTCPLKNICPY 209
>gi|237756607|ref|ZP_04585124.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691238|gb|EEP60329.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 215
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + E EI + I G A IKE LVE S VP D E LL
Sbjct: 68 EKILKLSEKEIEELIYPVGFYRNKAKIIKEISKILVEKFNS-------KVPDDL--ETLL 118
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+G+G K+ V A VDV+V RI+ R+G V + P + L++ P
Sbjct: 119 SFKGVGRKTANLVLSEGFGKPAICVDVHVHRISNRIGLVKTKN-PEETEFKLMEILP--- 174
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+K ++++ + FG+ CK P C CP+ C++
Sbjct: 175 --------------KKYWKDINFVFVAFGQTICKPVKPKCNQCPIIKYCEY 211
>gi|332876792|ref|ZP_08444550.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047392|ref|ZP_09108999.1| endonuclease III [Paraprevotella clara YIT 11840]
gi|332685351|gb|EGJ58190.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529993|gb|EHG99418.1| endonuclease III [Paraprevotella clara YIT 11840]
Length = 222
Score = 48.9 bits (115), Expect = 0.023, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A I + I+ N A + LVE + S VP D + L+
Sbjct: 63 EAMAAATPETIYEYIRSVSYPNNKAKHLVGMARMLVENYHS-------EVPSDL--DELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPVM 1120
+ G+G K+ ++ + + A VD +V R++ R+G VP P + L++ +P
Sbjct: 114 KLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPDTCTTPYSVEKQLVRYFP-- 171
Query: 1121 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASA 1180
D I + + H+ +I G+ C R+P C C L+ C+H+ +A
Sbjct: 172 DPI---------------IPKAHHWLILHGRYTCTARTPKCEVCGLKMICRHYLRTHGAA 216
Query: 1181 R 1181
R
Sbjct: 217 R 217
>gi|345882993|ref|ZP_08834444.1| endonuclease III [Prevotella sp. C561]
gi|345044205|gb|EGW48249.1| endonuclease III [Prevotella sp. C561]
Length = 215
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D + + A EI D +K N A + E LVE G VP D
Sbjct: 61 DAKTMATATSDEIFDYVKSVSYPNSKAKHLVEMSKMLVEKFGG-------EVPSDP--NA 111
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDLHIHLLKEYP 1118
L+ + G+G K+ ++ + VD +V R++ RLG VP P + +L+K P
Sbjct: 112 LITLPGVGRKTANVIQAVWFGKPTLAVDTHVYRVSHRLGLVPSTANTPRKVEDYLMKNIP 171
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ + + H+ ++ G+ CK P+C CP C
Sbjct: 172 T-----------------EEVTDAHHWILLHGRYVCKSAKPDCEHCPFDDMC 206
>gi|312136836|ref|YP_004004173.1| endonuclease iii ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
gi|311224555|gb|ADP77411.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
Length = 209
Score = 48.9 bits (115), Expect = 0.023, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 995 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPP 1053
K D++ E + A E ++ IK G + A RIK+ L+ + G + P
Sbjct: 55 KYDTI--EKIANAQEKDLEKLIKCVGFYRVKAKRIKKISKILINKYDGKV---------P 103
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
+KE LL + G+G K+ CV + A PVD +V R+A R+G V + P + L
Sbjct: 104 KNLKE-LLKLPGVGRKTANCVLVYGFNEDAIPVDTHVHRVANRIGLVNTKT-PEETEKTL 161
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K P + E++ + FGK CK +P CP++ CK+
Sbjct: 162 RKIIP-----------------RDYWKEVNKLFVEFGKNICKPTNPKHEKCPIKKFCKY 203
>gi|119897726|ref|YP_932939.1| DNA-(apurinic or apyrimidinic site) lyase [Azoarcus sp. BH72]
gi|119670139|emb|CAL94052.1| DNA-(apurinic or apyrimidinic site) lyase [Azoarcus sp. BH72]
Length = 213
Score = 48.9 bits (115), Expect = 0.023, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 27/169 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ E +AD IK G A L+E HG VP D+ E L
Sbjct: 65 EAMLALGEEGVADYIKTIGLFRNKAKNTVALSRLLLERHGG-------EVPRDR--EALE 115
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + A VD ++ R+A R G P + + + LLK P
Sbjct: 116 ALPGVGRKTANVVLNTIFREPAMAVDTHIFRLANRTGLAPGKDVMA-VEQSLLKRVP--- 171
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L + H+ +I G+ C R PNC AC +R C
Sbjct: 172 --------------KAFLLDAHHWLILHGRYVCTARKPNCAACIVRDLC 206
>gi|220935177|ref|YP_002514076.1| HhH-GPD family protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996487|gb|ACL73089.1| HhH-GPD family protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 217
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ ++E+A I+ G N+ A R+K ++ HG LR+ P +K++ LL
Sbjct: 62 EAMLDLSDAELARLIRPSGYFNVKARRLKALCRWYLD-HGGRRR--LRHWPTEKLRASLL 118
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G ++ + + L + F +D R+ RLG H H Y D
Sbjct: 119 SVHGIGPETADDILLYAFDRPVFVIDAYTRRLLGRLG-----------HPHAQAAY---D 164
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+M L L D++ E H ++ GK C+ + P C C L +C+
Sbjct: 165 DFRMSLESTLGQ-DERLYNEYHALIVAHGKDVCRPK-PRCEQCVLSTKCE 212
>gi|114566493|ref|YP_753647.1| endonuclease III [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337428|gb|ABI68276.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 207
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ D S + + I+ G A +K+ +VE ++ VP D + LL
Sbjct: 60 EALAAIDLSLLEEKIRGVGLYRNKARHLKKMAQIIVE-------QYQGEVPSDF--DELL 110
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G KS +R + + VD +V R+A RLG V LP L ++ P
Sbjct: 111 SLPGVGRKSANVIRSVVFKKPGLGVDTHVHRVANRLGLVN-SKLPEQTEKALKEQIP--- 166
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+K E H+ +I G+ C+ R P C C L G C+
Sbjct: 167 --------------EKCWSEAHHLLIFHGRRICQARKPQCNNCVLEGLCE 202
>gi|329961055|ref|ZP_08299334.1| endonuclease III [Bacteroides fluxus YIT 12057]
gi|328532341|gb|EGF59145.1| endonuclease III [Bacteroides fluxus YIT 12057]
Length = 224
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD ++E L+ + G+G K+ ++ + A VD +V R++ RLG VP + P +
Sbjct: 106 PDTLEE-LVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRLGLVPDKCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P D + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIPEAD-----------------IPIAHHWLILHGRYVCQARTPQCDNCGLQLMCK 207
Query: 1172 HFA 1174
++
Sbjct: 208 YYC 210
>gi|385805176|ref|YP_005841574.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
gi|383795039|gb|AFH42122.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
Length = 225
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 1047 WLRNV---PPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ 1103
+L+N+ PP++ + L I+G+G K+ + + FPVD ++ R+ RL
Sbjct: 113 FLKNLCKKPPEEARRELTSIKGIGKKTADLFLSVYCNMPLFPVDRHIKRVTERL------ 166
Query: 1104 PLPGDLHIHLLKEYPVMDKIQMY-----LWPRLCYLDQKTLYELHYQMITFGKIFCKKRS 1158
+DK Y W + LD+ L E HY++I G+ FC+ +
Sbjct: 167 ----------------LDKKMDYEEVSQFWREV--LDRNLLKEAHYKLIYVGRKFCRPKG 208
Query: 1159 PNCGACPLRGECK 1171
C CPL C+
Sbjct: 209 EKCDLCPLADICR 221
>gi|325298553|ref|YP_004258470.1| endonuclease III [Bacteroides salanitronis DSM 18170]
gi|324318106|gb|ADY35997.1| endonuclease III [Bacteroides salanitronis DSM 18170]
Length = 214
Score = 48.9 bits (115), Expect = 0.024, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP---LQPLPGDL 1109
PD ++E L+ + G+G K+ ++ + A VD +V R++ R+G VP PL +
Sbjct: 106 PDTLEE-LVKLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPGTCTTPLATEK 164
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
H+ Y+ + + + H+ +I G+ C R+P C C L G
Sbjct: 165 HLTR-------------------YIPEALIPKAHHWLILHGRYVCTARNPKCDKCGLNGI 205
Query: 1170 CK 1171
C+
Sbjct: 206 CQ 207
>gi|258648124|ref|ZP_05735593.1| endonuclease III [Prevotella tannerae ATCC 51259]
gi|260852003|gb|EEX71872.1| endonuclease III [Prevotella tannerae ATCC 51259]
Length = 215
Score = 48.9 bits (115), Expect = 0.025, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKE 1058
D A+ A E+ + IK N A + LVE +G + P ++E
Sbjct: 61 DAAAMAQATPEELLEYIKSVSYPNSKAKHLAGLAQMLVEAFNGEV---------PTTLEE 111
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G K+ V+ ++ A VD +V R++ RLG VP K
Sbjct: 112 -LTRLPGVGRKTANVVQAVAFHKAALAVDTHVFRVSHRLGLVP-------------KTAN 157
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K++M L Y+ ++ + H+ ++ G+ C P C C LRG CK
Sbjct: 158 TPYKVEMALKK---YIPEEKVAPSHFWLLLHGRYVCTALRPKCDKCDLRGLCK 207
>gi|417094306|ref|ZP_11957898.1| endonuclease III protein [Rhizobium etli CNPAF512]
gi|327194662|gb|EGE61511.1| endonuclease III protein [Rhizobium etli CNPAF512]
Length = 260
Score = 48.9 bits (115), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ D IK G A + LV+ E+ VP + +E L+ + G+G
Sbjct: 100 EEKVRDYIKTIGLYRNKAKNVIALSQMLVD-------EFAGRVP--ETREELVRLPGVGR 150
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ L+K P
Sbjct: 151 KTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGK-TPDEVEARLMKVVP---------- 199
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ LY H+ +I G+ CK R P C C + CK
Sbjct: 200 -------KQYLYHAHHWLILHGRYTCKARRPECERCVIADICK 235
>gi|357023960|ref|ZP_09086126.1| endonuclease III [Mesorhizobium amorphae CCNWGS0123]
gi|355544051|gb|EHH13161.1| endonuclease III [Mesorhizobium amorphae CCNWGS0123]
Length = 273
Score = 48.9 bits (115), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E+++ D I+ G A + L+ HG VP D+ E L+ + G+G
Sbjct: 113 EAKVGDYIRTIGLWRNKARNVIALSQALIADHGG-------EVPDDR--EQLVKLPGVGR 163
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RI RLG P + ++++ L
Sbjct: 164 KTANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGK---------------TPEQVEQGL- 207
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L + + + H+ +I G+ CK R P+C AC + CK
Sbjct: 208 --LTVIPDEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 248
>gi|385799712|ref|YP_005836116.1| DNA-(apurinic or apyrimidinic site) lyase [Halanaerobium praevalens
DSM 2228]
gi|309389076|gb|ADO76956.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Halanaerobium praevalens DSM 2228]
Length = 218
Score = 48.5 bits (114), Expect = 0.026, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
E+ VP K ++ LL + G+G K+ V + AFPVD +V R++ RLG
Sbjct: 104 EFNSQVP--KTRKELLKLSGVGRKTANVVLSSAFAKAAFPVDTHVFRVSARLG------- 154
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACP 1165
+ K +K L PR ++D H+ +I G+ CK ++P+C C
Sbjct: 155 -----LSSGKNVSTTEKELTDLIPRKYWID------FHHWLIDHGRALCKAQNPDCKNCF 203
Query: 1166 LRGECKHF 1173
+ C ++
Sbjct: 204 AKKICNYY 211
>gi|308174025|ref|YP_003920730.1| endonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|384158761|ref|YP_005540834.1| endonuclease III [Bacillus amyloliquefaciens TA208]
gi|384164798|ref|YP_005546177.1| endonuclease III [Bacillus amyloliquefaciens LL3]
gi|384167825|ref|YP_005549203.1| endonuclease III [Bacillus amyloliquefaciens XH7]
gi|307606889|emb|CBI43260.1| endonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|328552849|gb|AEB23341.1| endonuclease III [Bacillus amyloliquefaciens TA208]
gi|328912353|gb|AEB63949.1| endonuclease III [Bacillus amyloliquefaciens LL3]
gi|341827104|gb|AEK88355.1| endonuclease III [Bacillus amyloliquefaciens XH7]
Length = 219
Score = 48.5 bits (114), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|374307877|ref|YP_005054308.1| endonuclease III [Filifactor alocis ATCC 35896]
gi|291166112|gb|EFE28158.1| endonuclease III [Filifactor alocis ATCC 35896]
Length = 211
Score = 48.5 bits (114), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 994 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 1053
DKM S+ E E+ + I+ G N A I + L+E +G VP
Sbjct: 60 DKMVSLS--------EGELIELIRTIGFYNNKAKNILMTSHILLEKYGG-------EVP- 103
Query: 1054 DKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 1113
K +E L+ + G+G K+ V + AF VD +VGR+ RLG + P + I +
Sbjct: 104 -KTREELVKLPGVGRKTANVVISNAFGIPAFAVDTHVGRVTNRLGLTKSKN-PNQIEIDV 161
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ P K LY + H+ I G+ CK P C +CPL C +
Sbjct: 162 TSQLP------------------KKLYTQAHHLFIFHGRKCCKAIRPLCDSCPLTVNCTY 203
Query: 1173 F 1173
+
Sbjct: 204 Y 204
>gi|345303642|ref|YP_004825544.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
gi|345112875|gb|AEN73707.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
Length = 280
Score = 48.5 bits (114), Expect = 0.027, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD + E L + G+G K+ V ++ A PVD +V R+A R+G V P ++
Sbjct: 106 PDSL-EALESLPGVGPKTARVVASVAFGVAALPVDTHVYRVAHRIGLVRRARTPLEVERR 164
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L ++ P D W E H+ +I G+ C R P+C C L C H
Sbjct: 165 LKRQLPARD------WG-----------EAHHLLILHGRYTCTARQPHCDRCVLTDLCDH 207
Query: 1173 F 1173
+
Sbjct: 208 Y 208
>gi|387783942|ref|YP_006070025.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Streptococcus salivarius JIM8777]
gi|338744824|emb|CCB95190.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Streptococcus salivarius JIM8777]
Length = 214
Score = 48.5 bits (114), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K + L + G+G K+ V + VD +V R++ RL VP ++ L+
Sbjct: 107 KTHKELESLPGVGRKTANVVLAEVYGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K+ P D I H++MI FG+ C ++P C CPL+ CK++
Sbjct: 167 KKIPKRDWIIS-----------------HHRMIFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|424916723|ref|ZP_18340087.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392852899|gb|EJB05420.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 261
Score = 48.5 bits (114), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
++ L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+K
Sbjct: 140 RDELVKLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIKLAPGK-TPDEVEARLMKV 198
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P Q LY H+ +I G+ CK R P C C + CK
Sbjct: 199 IP-----------------QHYLYHAHHWLILHGRYTCKARRPECERCVIADLCK 236
>gi|227823996|ref|YP_002827969.1| endonuclease III [Sinorhizobium fredii NGR234]
gi|227342998|gb|ACP27216.1| putative endonuclease III protein [Sinorhizobium fredii NGR234]
Length = 317
Score = 48.5 bits (114), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ D IK G A + RL+ G VP K +E L+ + G+G
Sbjct: 158 EEKLRDHIKTIGLYRNKAKNVIALSERLIADFGG-------AVP--KTREELMTLPGVGR 208
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ L++ P
Sbjct: 209 KTANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEAKLMRVIP---------- 257
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K LY H+ +I G+ CK R P C C + CK
Sbjct: 258 -------PKYLYHAHHWLILHGRYVCKARRPECERCIIADICK 293
>gi|344344631|ref|ZP_08775492.1| HhH-GPD family protein [Marichromatium purpuratum 984]
gi|343803795|gb|EGV21700.1| HhH-GPD family protein [Marichromatium purpuratum 984]
Length = 221
Score = 48.5 bits (114), Expect = 0.028, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
D + +A+ ++ G + R+ F R H + LE L + +++E+LL G+G
Sbjct: 69 DPARLAELLRPSGYYRVKTRRLLAFCERY---HAAGGLEPLAALATPRLREWLLATPGIG 125
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + L + H F VD R+ RLG L GD ++Y ++I+ +
Sbjct: 126 PETADDILLYAFAHPVFVVDAYTRRLFSRLGL-----LAGD------EDY---ERIRRWF 171
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASAR 1181
L D L E H ++ K C+ R P C C LR C ASA +S R
Sbjct: 172 EQALPD-DVALLQEYHALIVAHAKHACRAR-PVCAGCALRACCP--ASAPSSER 221
>gi|389852800|ref|YP_006355034.1| endonuclease III [Pyrococcus sp. ST04]
gi|388250106|gb|AFK22959.1| endonuclease III [Pyrococcus sp. ST04]
Length = 216
Score = 48.5 bits (114), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
I LE V P+ ++E L+ + G+G K V A PVD +V R++ RLG VP
Sbjct: 101 IILEKYGGVVPNTLEE-LMKLPGIGRKCANIVLAYGFGIPAIPVDTHVNRVSKRLGLVPP 159
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
P + L K P + LY +++ M+ GK C+ P C
Sbjct: 160 NATPEKVEEILKKLLP----------------KDEWLY-VNHAMVDHGKAVCRPIKPKCD 202
Query: 1163 ACPLRGEC 1170
CPLR C
Sbjct: 203 ECPLRDIC 210
>gi|198276951|ref|ZP_03209482.1| hypothetical protein BACPLE_03156 [Bacteroides plebeius DSM 17135]
gi|198270476|gb|EDY94746.1| endonuclease III [Bacteroides plebeius DSM 17135]
Length = 221
Score = 48.5 bits (114), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 23/122 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP---LQPLPGDL 1109
PD ++E L+ + G+G K+ ++ + A VD +V R++ R+G VP PL +
Sbjct: 106 PDTLEE-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPRTCTTPLATEK 164
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
L+K Y+ + + H+ +I G+ C R+P C +C L G
Sbjct: 165 Q--LVK-----------------YIPESLIPTAHHWLILHGRYVCTARAPKCESCGLNGI 205
Query: 1170 CK 1171
CK
Sbjct: 206 CK 207
>gi|410454551|ref|ZP_11308486.1| DNA-lyase [Bacillus bataviensis LMG 21833]
gi|409931832|gb|EKN68807.1| DNA-lyase [Bacillus bataviensis LMG 21833]
Length = 213
Score = 48.5 bits (114), Expect = 0.029, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
++A I+ G NI A RIK ++ L IDL ++ + ++ LL I+G+G ++
Sbjct: 68 DLAQLIRPSGFFNIKAKRIKSYMAWFKTLEYDIDL--IKKIDKHLLRNELLSIKGIGRET 125
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
+ + L + F VD RI RLG+ + + Y K PR
Sbjct: 126 GDVILLYAFDTPIFIVDAYARRIFYRLGY------------DMPESYDAFRKQIEKELPR 173
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D E H ++ K CK + P C CPL G C
Sbjct: 174 ----DLVLYNEFHALVVEHAKEHCKAK-PICEGCPLLGIC 208
>gi|380696329|ref|ZP_09861188.1| endonuclease III [Bacteroides faecis MAJ27]
Length = 225
Score = 48.5 bits (114), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNMED-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P + + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIP-----------------ENLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|298387599|ref|ZP_06997151.1| endonuclease III [Bacteroides sp. 1_1_14]
gi|298259806|gb|EFI02678.1| endonuclease III [Bacteroides sp. 1_1_14]
Length = 176
Score = 48.5 bits (114), Expect = 0.030, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD + + L+ + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 57 PDNMDD-LIKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 115
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P +K + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 116 ELVKNIP-----------------EKLIPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 158
Query: 1172 HFAS 1175
+F +
Sbjct: 159 YFCN 162
>gi|163867394|ref|YP_001608588.1| endonuclease III [Bartonella tribocorum CIP 105476]
gi|161017035|emb|CAK00593.1| endonuclease III [Bartonella tribocorum CIP 105476]
Length = 253
Score = 48.5 bits (114), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 51/275 (18%)
Query: 929 MPQAHDAT--TTSKKSPRGKGKSKEYKSD-----MKNDRTKKTTPKKNSDNTVQQDWDLL 981
MPQ++ T T K S S Y D + ++ TPK SD + LL
Sbjct: 1 MPQSNIKTPRNTIKLSKMRNLSSISYNKDEIAEIFRRFSVQRPTPK--SDLNYINTFTLL 58
Query: 982 RRIYSTGEERSHDKMDSVDWEAVRCAD---------ESEIADAIKERGQQNIIAGRIKEF 1032
+ + + + ++ E R AD E EIA I+ G A +
Sbjct: 59 VAVVLSAQA-TDISVNKATKELFRLADQPEKMVALGEEEIAHHIRSIGLWRAKARNVYAL 117
Query: 1033 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGR 1092
N L++ +G PD E L+ + G+G K+ V ++ VD ++ R
Sbjct: 118 SNCLIDQYGG--------QVPDTC-EALMSLPGVGRKTANVVLNVAFGQPTLAVDTHIFR 168
Query: 1093 IAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152
++ RLG P + P + LLK PV L H+ +I G+
Sbjct: 169 LSNRLGLAPGKT-PEIVEKKLLKIIPV-----------------HYLRHAHHWLILHGRY 210
Query: 1153 FCKKRSPNCGACPLRGECKHFASAVASARFALPGP 1187
C+ R P C C + CK AS A+P P
Sbjct: 211 ICQARKPQCTQCIIADLCK-----AASKTNAIPAP 240
>gi|317502642|ref|ZP_07960762.1| endonuclease III [Prevotella salivae DSM 15606]
gi|315666261|gb|EFV05808.1| endonuclease III [Prevotella salivae DSM 15606]
Length = 229
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ A+ +I + IK N A + E LVE +G + PD +E L
Sbjct: 63 EAMAKANWEDIFELIKSVSYPNAKAHHLSEMSKILVERFNGKV---------PDNTEE-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPV 1119
+ G+G K+ V+ + VD +V R++ RL VP P + + LLK P
Sbjct: 113 TQLPGVGRKTANVVQSVWFGKPTLAVDTHVYRVSHRLSLVPEAANTPLKVELELLKHIPE 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D + H+ ++ G+ CK + P C CP C
Sbjct: 173 AD-----------------VSNAHHWLLLHGRYVCKSQKPQCDDCPFNTIC 206
>gi|299140539|ref|ZP_07033677.1| endonuclease III [Prevotella oris C735]
gi|298577505|gb|EFI49373.1| endonuclease III [Prevotella oris C735]
Length = 229
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 29/171 (16%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYL 1060
EA+ AD +I IK N A + E LVE +G + PD + L
Sbjct: 63 EAMAQADWEDIFQLIKSVSYPNSKAHHLSEMAKILVERFNGEV---------PDNTDD-L 112
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPV 1119
+ G+G K+ V+ + VD +V R++ RLG VP P + + L+K P
Sbjct: 113 TQLPGVGRKTANVVQAVWFGKPTLAVDTHVYRVSHRLGLVPETANTPLKVELELMKYIPK 172
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D + H+ ++ G+ CK + P C CP C
Sbjct: 173 AD-----------------VGNAHHWLLLHGRYICKSQRPQCQDCPFSTFC 206
>gi|359783795|ref|ZP_09287004.1| endonuclease III [Pseudomonas psychrotolerans L19]
gi|359368255|gb|EHK68837.1| endonuclease III [Pseudomonas psychrotolerans L19]
Length = 212
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E L+E HG VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKARNVIETCRLLLERHGG-------EVP--QTREELEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + +A VD ++ R++ R P + + ++ + LLK P
Sbjct: 123 NVVLNTAFRQLAMAVDTHIFRVSNRTNLAPGKNVV-EVELRLLKVVP------------- 168
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ L + H+ +I G+ C+ R P CG+C + C++ A
Sbjct: 169 ----RDFLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEYKA 207
>gi|228476833|ref|ZP_04061478.1| endonuclease III [Streptococcus salivarius SK126]
gi|387761465|ref|YP_006068442.1| endonuclease III [Streptococcus salivarius 57.I]
gi|228251407|gb|EEK10552.1| endonuclease III [Streptococcus salivarius SK126]
gi|339292232|gb|AEJ53579.1| endonuclease III [Streptococcus salivarius 57.I]
Length = 214
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K + L + G+G K+ V + VD +V R++ RL VP ++ L+
Sbjct: 107 KTHKELESLPGVGRKTANVVLAEVYGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K+ P D I H++MI FG+ C ++P C CPL+ CK++
Sbjct: 167 KKIPKRDWIIS-----------------HHRMIFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|376283806|ref|YP_005157016.1| endonuclease III [Corynebacterium diphtheriae 31A]
gi|371577321|gb|AEX40989.1| endonuclease III [Corynebacterium diphtheriae 31A]
Length = 251
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA A+E+E+ + I+ G A + +LV G +P D E+L+
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVTDFGG-------EIPRDL--EHLV 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR + VD + GR+ RLG + Q P + E+ + D
Sbjct: 126 SLPGVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHEIAD 178
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
I+ W T++ +++I G+ C R+ CGAC L C + A
Sbjct: 179 LIEKKEW---------TMFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGEA 222
>gi|157804115|ref|YP_001492664.1| endonuclease III [Rickettsia canadensis str. McKiel]
gi|157785378|gb|ABV73879.1| Endonuclease III [Rickettsia canadensis str. McKiel]
Length = 209
Score = 48.5 bits (114), Expect = 0.031, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 1050 NVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDL 1109
N P+ KE L+ + G+G K+ V VD +V R+A R+G
Sbjct: 102 NSVPNSFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG----------- 149
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
L + + ++ L L L++K L H+ +I G+ CK R P+C CP++
Sbjct: 150 ----LAQGSTPEVVEKEL---LQILNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKY 202
Query: 1170 CKHFASA 1176
C+++ +A
Sbjct: 203 CEYYLNA 209
>gi|424869508|ref|ZP_18293209.1| Putative endonuclease III [Leptospirillum sp. Group II 'C75']
gi|124514281|gb|EAY55795.1| putative endonuclease III [Leptospirillum rubarum]
gi|387220626|gb|EIJ75278.1| Putative endonuclease III [Leptospirillum sp. Group II 'C75']
Length = 210
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNR-LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
S+I I G A IK R L E G I PD + E LL + G+GL
Sbjct: 68 SDIESLIFPVGFYRTKAKTIKTIAERVLTEFGGKI---------PDTL-EGLLSLPGVGL 117
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V + + F VD++V RI R W +Q D H+++ PV+ + W
Sbjct: 118 KTANLVLTVGFEKEGFCVDIHVHRILNR--WGVIQTHSPDETYHIVE--PVLPR----KW 169
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
R + ++ FG+ FC+ SP C CPL +C
Sbjct: 170 KR----------RANALLVAFGQHFCRPVSPFCSVCPLLPDC 201
>gi|219848286|ref|YP_002462719.1| HhH-GPD family protein [Chloroflexus aggregans DSM 9485]
gi|219542545|gb|ACL24283.1| HhH-GPD family protein [Chloroflexus aggregans DSM 9485]
Length = 223
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 25/172 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ ADESE+ + ++ G IK + + H +P D E LL
Sbjct: 67 EALALADESELREVLRPLGLSKRFPYLIKA-ARYICDNHNG-------EIPADF--ESLL 116
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G + + + + P DVNV R R + E +
Sbjct: 117 KVPGIGKYTATAILIFAYGQKLVPADVNVLRFVSRFTGL---------------EMGHVT 161
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K LW L L + + ++ F ++ C+ R P C ACPL C +F
Sbjct: 162 KGSRELWNLLPLLSEANVGLSAENLLDFTRLICRARKPKCNACPLSAHCSYF 213
>gi|392375109|ref|YP_003206942.1| hypothetical protein DAMO_2061 [Candidatus Methylomirabilis oxyfera]
gi|258592802|emb|CBE69111.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 228
Score = 48.5 bits (114), Expect = 0.033, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 17/159 (10%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
+ +A I+ G N+ R+K L+ +G + + +++E LL I G+G
Sbjct: 73 QEHLATLIRPSGYYNMKTERLKHVTRFLLTRYGG-SVRRMGRTGLSELREELLGISGVGE 131
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
++ + + L + F VD R+ R G + G++ + P
Sbjct: 132 ETADSILLYAGDRPIFVVDAYTRRVLERHGLIAKNTRYGEIQRLFMTHLPT--------- 182
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
D E H ++ GK +C+ R+PNC CPLR
Sbjct: 183 ------DATLFNEYHALLVAVGKTYCR-RTPNCDKCPLR 214
>gi|302340587|ref|YP_003805793.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta smaragdinae
DSM 11293]
gi|301637772|gb|ADK83199.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta smaragdinae
DSM 11293]
Length = 224
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 32/172 (18%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D ++ D +IA I G + A ++K +L E VP ++ +
Sbjct: 75 DLGSLAAMDTEQIAKLIYPAGFYRVKAAQLKTIAMKLKE----------TGVPAER--DR 122
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHIHLLKEYP 1118
LL + G+G K+ V L+ A VDV+V RI+ RLG + P ++ +
Sbjct: 123 LLALPGVGRKTANLVLGLAFGIPAICVDVHVHRISNRLGLITTTTPEKSEMALE------ 176
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ PR +++ TL+ + FG+ CK SP C CPL C
Sbjct: 177 -------AILPRRYWIEINTLF------VAFGQTLCKPVSPLCSRCPLADVC 215
>gi|23099212|ref|NP_692678.1| endonuclease III [Oceanobacillus iheyensis HTE831]
gi|22777440|dbj|BAC13713.1| endonuclease III (DNA repair) [Oceanobacillus iheyensis HTE831]
Length = 216
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
KE L+ + G+G K+ V ++ + VD +V R++ RLG + ++ L+K+
Sbjct: 109 KEELVKLAGVGRKTANVVASIAFNEPSIAVDTHVERVSKRLGICKWKDSVLEVENTLMKK 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P D+ ++ H++MI FG+ CK R+P C CPL C+
Sbjct: 169 VP---------------RDEWSVT--HHRMIFFGRYHCKARNPQCPECPLLELCR 206
>gi|357454607|ref|XP_003597584.1| DEMETER-like protein [Medicago truncatula]
gi|355486632|gb|AES67835.1| DEMETER-like protein [Medicago truncatula]
Length = 219
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Query: 625 VVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKST 659
+VDSVV + + NVSD+LSSSA+MSL ARFPLKS+
Sbjct: 1 MVDSVVE-FFSLNVSDHLSSSAFMSLVARFPLKSS 34
>gi|418017971|ref|ZP_12657527.1| endonuclease III [Streptococcus salivarius M18]
gi|345526820|gb|EGX30131.1| endonuclease III [Streptococcus salivarius M18]
Length = 214
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K + L + G+G K+ V + VD +V R++ RL VP ++ L+
Sbjct: 107 KTHKELESLPGVGRKTANVVLAEVYGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K+ P D I H++MI FG+ C ++P C CPL+ CK++
Sbjct: 167 KKIPKRDWIIS-----------------HHRMIFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|317055920|ref|YP_004104387.1| DNA-(apurinic or apyrimidinic site) lyase [Ruminococcus albus 7]
gi|315448189|gb|ADU21753.1| DNA-(apurinic or apyrimidinic site) lyase [Ruminococcus albus 7]
Length = 212
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +EI + +K G A IKE +L + +G V PD + E L + G+
Sbjct: 71 ADIAEIEEIVKPCGLYKTKAKSIKEMCIQLRDEYG--------GVLPDTL-EGLTKLSGI 121
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ + A D + RI RLG V + P K++
Sbjct: 122 GRKTANLIMGDIYHKPAVVTDTHCIRITGRLGLVK-------------NKEPA--KVEAE 166
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LW L + +L ++++ FG+ +C RSP CG CPL C
Sbjct: 167 LWK---ILPPEKSSDLCHRLVLFGREYCTARSPKCGGCPLNDIC 207
>gi|394993581|ref|ZP_10386326.1| endonuclease III [Bacillus sp. 916]
gi|393805693|gb|EJD67067.1| endonuclease III [Bacillus sp. 916]
Length = 219
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+++ G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVNLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|393216983|gb|EJD02473.1| DNA glycosylase [Fomitiporia mediterranea MF3/22]
Length = 570
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD K+ + ++ G+G S + ++ H +D NV R+ R+ + P
Sbjct: 191 PDNAKDMMANVPGIGRYSAGAISSIAYNHCESVLDGNVNRLLSRVLALHANP-------- 242
Query: 1113 LLKEYPVMDKIQMYLWPRLCYL--DQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K +D LW + D + ++ +I G CK R P+C ACPLR C
Sbjct: 243 --KSKATLD----VLWDGAAAMVKDTEEPGNINQALIELGSTVCKPRDPDCAACPLRDYC 296
Query: 1171 KHF 1173
+
Sbjct: 297 NAY 299
>gi|255693170|ref|ZP_05416845.1| endonuclease III [Bacteroides finegoldii DSM 17565]
gi|260621061|gb|EEX43932.1| endonuclease III [Bacteroides finegoldii DSM 17565]
Length = 225
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD +++ L + G+G K+ ++ + A VD +V R++ R+G VP P +
Sbjct: 106 PDNLED-LTKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P ++ + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELIKNIP-----------------EELIPIAHHWLILHGRYVCQARTPKCATCGLQMICK 207
Query: 1172 HFAS 1175
+F +
Sbjct: 208 YFCN 211
>gi|195580555|ref|XP_002080101.1| GD21665 [Drosophila simulans]
gi|194192110|gb|EDX05686.1| GD21665 [Drosophila simulans]
Length = 388
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 30/148 (20%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AF 1084
A +K+ ++ L++ +GS D+ PD VK+ L+ + G+G K ++ I
Sbjct: 253 AKYLKQTVDILMDKYGS-DI-------PDNVKD-LVALPGVGPKMAHICMAVAWNKITGI 303
Query: 1085 PVDVNVGRIAVRLGWVPLQPL--PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
VDV+V R++ RLGWVP +P P + L K P LW E+
Sbjct: 304 GVDVHVHRLSNRLGWVP-KPTKEPEQTRVALEKWLP------FSLW-----------SEV 345
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGEC 1170
++ + FG+ C PNCG C + C
Sbjct: 346 NHLFVGFGQTICTPVKPNCGECLNKDIC 373
>gi|410478975|ref|YP_006766612.1| EndoIII-related endonuclease [Leptospirillum ferriphilum ML-04]
gi|406774227|gb|AFS53652.1| putative EndoIII-related endonuclease [Leptospirillum ferriphilum
ML-04]
Length = 225
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 1010 SEIADAIKERGQQNIIAGRIKEFLNR-LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
S+I I G A IK R L E G I PD + E LL + G+GL
Sbjct: 83 SDIESLIFPVGFYRTKAKTIKTIAERVLTEFGGKI---------PDTL-EGLLSLPGVGL 132
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V + + F VD++V RI R W +Q D H+++ PV+ + W
Sbjct: 133 KTANLVLTVGFEKEGFCVDIHVHRILNR--WGVIQTHSPDETYHIVE--PVLPR----KW 184
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
R + ++ FG+ FC+ SP C CPL +C
Sbjct: 185 KR----------RANALLVAFGQHFCRPVSPFCSVCPLLPDC 216
>gi|372270183|ref|ZP_09506231.1| endonuclease III [Marinobacterium stanieri S30]
Length = 211
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ + + IK G N A + + L+ELHGS VP D+ L
Sbjct: 62 EAMLALGVDGVKEHIKTIGLFNTKAENVIKTCRMLIELHGS-------EVPQDRAA--LE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + VD ++ R++ R G P + + D+ LL+ P
Sbjct: 113 KLPGVGRKTANVVLNTAFGQPTMAVDTHIFRVSNRTGIAPGKTVL-DVEKKLLRHVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C R P CG+C + C +
Sbjct: 169 --------------KPFLVDAHHWLILHGRYVCTARKPKCGSCLIEDLCDY 205
>gi|190893518|ref|YP_001980060.1| endonuclease III protein [Rhizobium etli CIAT 652]
gi|190698797|gb|ACE92882.1| endonuclease III protein [Rhizobium etli CIAT 652]
Length = 268
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ D IK G A + LV+ E+ VP + +E L+ + G+G
Sbjct: 108 EEKVRDYIKTIGLYRNKAKNVIALSQMLVD-------EFAGRVP--ETREELVRLPGVGR 158
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ L+K P
Sbjct: 159 KTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGK-TPDEVEARLMKVVP---------- 207
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ LY H+ +I G+ CK R P C C + CK
Sbjct: 208 -------KHYLYHAHHWLILHGRYTCKARRPECERCVIADICK 243
>gi|157364361|ref|YP_001471128.1| endonuclease III [Thermotoga lettingae TMO]
gi|157314965|gb|ABV34064.1| endonuclease III [Thermotoga lettingae TMO]
Length = 217
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 29/177 (16%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKE 1058
D ++ A S+I D IK G A RI + +VE +G I P + +
Sbjct: 60 DVYSLSMAKPSQIYDLIKASGMYRQKAERIIKVSQIIVEKFNGKI---------PANLHD 110
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
LL + G+G K+ V A VD +V RI+ RLG+V + P L K P
Sbjct: 111 -LLSLPGVGRKTANIVLYHCFCQPALAVDTHVHRISNRLGFVKTKT-PEQTEEGLKKIIP 168
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175
+K ++ M+ FGK C R P C CP+ C++F S
Sbjct: 169 -----------------EKFWGPINGAMVEFGKKVCLPRKPKCQECPVNKYCEYFNS 208
>gi|427386757|ref|ZP_18882954.1| endonuclease III [Bacteroides oleiciplenus YIT 12058]
gi|425725966|gb|EKU88833.1| endonuclease III [Bacteroides oleiciplenus YIT 12058]
Length = 224
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHI 1111
PD ++E L+ + G+G K+ ++ + A VD +V R++ RLG VP P +
Sbjct: 106 PDTLEE-LVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRLGLVPDTCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K P D + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVKNIPEAD-----------------IPIAHHWLILHGRYVCQARTPQCDNCGLQLMCK 207
Query: 1172 HFA 1174
++
Sbjct: 208 YYC 210
>gi|289208913|ref|YP_003460979.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
gi|288944544|gb|ADC72243.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
Length = 216
Score = 48.1 bits (113), Expect = 0.037, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKV 1056
D +D E++ +A+ I+ G N+ A R++ L R +E G + E L + + +
Sbjct: 56 DVLDPESLLELPHEILAEHIRPSGYFNVKADRLRHLL-RFLEQQGGV--EALARMETEAL 112
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ LL ++G+G ++ + + L + + F VD R+ RLG + DL + + E
Sbjct: 113 RSALLSVKGVGPETADDIVLYAFERPVFVVDAYTRRLFERLGLPHARGAYDDLRVWVESE 172
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L P D + +LH ++ GK C+ + P C CPL C
Sbjct: 173 ----------LGP-----DAQAFNDLHALIVEHGKQRCRPK-PLCQGCPLSDVC 210
>gi|154686481|ref|YP_001421642.1| hypothetical protein RBAM_020490 [Bacillus amyloliquefaciens FZB42]
gi|384265830|ref|YP_005421537.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385265206|ref|ZP_10043293.1| HhH-GPD superfamily base excision DNA repair protein [Bacillus sp.
5B6]
gi|387898837|ref|YP_006329133.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus amyloliquefaciens
Y2]
gi|429505620|ref|YP_007186804.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452855993|ref|YP_007497676.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|154352332|gb|ABS74411.1| Nth [Bacillus amyloliquefaciens FZB42]
gi|380499183|emb|CCG50221.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385149702|gb|EIF13639.1| HhH-GPD superfamily base excision DNA repair protein [Bacillus sp.
5B6]
gi|387172947|gb|AFJ62408.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus amyloliquefaciens
Y2]
gi|429487210|gb|AFZ91134.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452080253|emb|CCP22015.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 219
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+++ G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVNLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|398848557|ref|ZP_10605368.1| endonuclease III [Pseudomonas sp. GM84]
gi|398248014|gb|EJN33443.1| endonuclease III [Pseudomonas sp. GM84]
Length = 212
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+A+ +++ IK G N A + E L+E HG VP + +E L
Sbjct: 62 QAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGG-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKTVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|291294869|ref|YP_003506267.1| endonuclease III [Meiothermus ruber DSM 1279]
gi|290469828|gb|ADD27247.1| endonuclease III [Meiothermus ruber DSM 1279]
Length = 235
Score = 48.1 bits (113), Expect = 0.037, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
D A+ A E+ IK G A I RLVE HG VP DK K
Sbjct: 86 DAFALAQATPEEVEPYIKTIGLYRSKARNIVLLARRLVEQHGG-------EVPVDKAK-- 136
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ V + VD ++ R+A RLG + Q P + L + +P
Sbjct: 137 LRALPGVGWKTATVVLGAAFGVPGIAVDTHLTRLAARLG-LSAQKDPEKIGGDLERLFP- 194
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+K ++ +H+ +I FG+ C R P C CPL +C
Sbjct: 195 ---------------KEKWVF-VHHALILFGRYRCTARKPQCPGCPLYDDC 229
>gi|438001671|ref|YP_007271414.1| 8-oxoguanine-DNA-glycosylase [Tepidanaerobacter acetatoxydans Re1]
gi|432178465|emb|CCP25438.1| 8-oxoguanine-DNA-glycosylase [Tepidanaerobacter acetatoxydans Re1]
Length = 285
Score = 48.1 bits (113), Expect = 0.038, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRI 1093
G +DL LR +P D+ +E LL + G+G K +C+ L S++ AFP+DV + R+
Sbjct: 184 GKVDLYGLRELPTDEAREVLLTLPGVGRKVADCIMLYSMRKFDAFPIDVWIKRV 237
>gi|387892350|ref|YP_006322647.1| endonuclease III [Pseudomonas fluorescens A506]
gi|423690227|ref|ZP_17664747.1| endonuclease III [Pseudomonas fluorescens SS101]
gi|387163314|gb|AFJ58513.1| endonuclease III [Pseudomonas fluorescens A506]
gi|388001854|gb|EIK63183.1| endonuclease III [Pseudomonas fluorescens SS101]
Length = 212
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E L+ELHG VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLLELHGG-------EVP--QTREALEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G I K ++K M P+
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTG------------IARGKNVVEVEKQLMKFVPKP 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C+ R P CG+C + C++
Sbjct: 171 YLLDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|332798680|ref|YP_004460179.1| DNA-(apurinic or apyrimidinic site) lyase [Tepidanaerobacter
acetatoxydans Re1]
gi|332696415|gb|AEE90872.1| DNA-(apurinic or apyrimidinic site) lyase [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 48.1 bits (113), Expect = 0.038, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRI 1093
G +DL LR +P D+ +E LL + G+G K +C+ L S++ AFP+DV + R+
Sbjct: 184 GKVDLYGLRELPTDEAREVLLTLPGVGRKVADCIMLYSMRKFDAFPIDVWIKRV 237
>gi|325275201|ref|ZP_08141168.1| endonuclease III [Pseudomonas sp. TJI-51]
gi|324099688|gb|EGB97567.1| endonuclease III [Pseudomonas sp. TJI-51]
Length = 212
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGS-------QVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + VD ++ R++ R G P + + ++ L+K P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIFRVSNRTGIAPGKTVL-EVEKKLVKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|403380710|ref|ZP_10922767.1| hypothetical protein PJC66_12927 [Paenibacillus sp. JC66]
Length = 225
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+++ G+G K+ V + A VD +V R++ RLG L+ ++ L+K+
Sbjct: 109 EQLVELPGVGRKTANVVVSNAFDVPAIAVDTHVERVSKRLGLAKLKDSVLEVEKSLMKKV 168
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + W + H+++I FG+ CK ++P C CPL C+
Sbjct: 169 PREE------WT-----------QTHHRLIFFGRYHCKAQNPRCEICPLLDICR 205
>gi|340398994|ref|YP_004728019.1| putative endonuclease III [Streptococcus salivarius CCHSS3]
gi|338742987|emb|CCB93495.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Streptococcus salivarius CCHSS3]
Length = 214
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K ++ L + G+G K+ V + VD +V R++ RL P ++ L+
Sbjct: 107 KTRKELESLPGVGRKTANVVLAEVYGIPSIAVDTHVSRVSKRLNIAPEDASVEEIEAELM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
K+ P D I H++MI FG+ C ++P C CPL+ CK++
Sbjct: 167 KKIPKKDWIIS-----------------HHRMIFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|310791057|gb|EFQ26586.1| HhH-GPD superfamily base excision DNA repair protein [Glomerella
graminicola M1.001]
Length = 517
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
DE E G + G+ + L ++ G + L+ +R +P D V L +G
Sbjct: 287 DEKETGKVANVPGAAEMTTGQKEHQLKKIEA--GILTLDHIRAMPSDDVMMALTKYPHIG 344
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
+K+ C+ L LQ +F VD +V R+ L WVP
Sbjct: 345 VKTAACLLLFCLQMPSFAVDTHVYRMCKWLYWVP 378
>gi|315230941|ref|YP_004071377.1| endonuclease III [Thermococcus barophilus MP]
gi|315183969|gb|ADT84154.1| endonuclease III [Thermococcus barophilus MP]
Length = 236
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD ++E L+ + G+G K V A PVD +V RI+ RLG P + P + +
Sbjct: 122 PDMLEE-LVKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPKAPPEKVEEY 180
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L + P LW +Y +++ M+ GK C+ SP C CPL+ C +
Sbjct: 181 LKELIP------KELW----------IY-VNHAMVDHGKAICRPISPRCDECPLKTLCPY 223
>gi|150398564|ref|YP_001329031.1| endonuclease III [Sinorhizobium medicae WSM419]
gi|150030079|gb|ABR62196.1| endonuclease III [Sinorhizobium medicae WSM419]
Length = 236
Score = 48.1 bits (113), Expect = 0.040, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ HLL
Sbjct: 114 RTREELVTLPGVGRKTANVVLSMAFGEATIAVDTHIFRIAHRIRIAPGKT-PDEVEAHLL 172
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ P + LY H+ +I G+ CK R P C C + CK
Sbjct: 173 RVIP-----------------EHRLYHAHHWLILHGRYVCKARRPECERCVIADICK 212
>gi|409082857|gb|EKM83215.1| hypothetical protein AGABI1DRAFT_69456 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 383
Score = 48.1 bits (113), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EAV ADES +++AI + G G IK L H D +VP K + L
Sbjct: 167 EAVIAADESVMSEAINKVGFWRRKTGYIKRATQML---HDDFD----SDVP--KTVDELC 217
Query: 1062 DIEGLGLKSVECVRLLSLQ-----HIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+ G+G K + L+LQ + VDV+V RI RLGW H K
Sbjct: 218 SLPGVGPK----MAFLALQVAWDLNHGIGVDVHVHRITNRLGW----------HQKPTKN 263
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL--RGECKHFA 1174
P ++ + W L + E+++ ++ FG++ C P C C L +G C
Sbjct: 264 -PEETRLNLQSW-----LPTEFHREINHMLVGFGQVICLPVGPRCDMCDLSTKGLCPSAQ 317
Query: 1175 SAVASAR 1181
AV ++
Sbjct: 318 KAVKRSK 324
>gi|26987828|ref|NP_743253.1| endonuclease III [Pseudomonas putida KT2440]
gi|24982528|gb|AAN66717.1|AE016300_2 endonuclease III [Pseudomonas putida KT2440]
Length = 212
Score = 48.1 bits (113), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E H S VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHDS-------QVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + A VD ++ R++ R G P + + ++ LLK P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKTVL-EVEKKLLKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|167035313|ref|YP_001670544.1| endonuclease III [Pseudomonas putida GB-1]
gi|166861801|gb|ABZ00209.1| endonuclease III [Pseudomonas putida GB-1]
Length = 212
Score = 48.1 bits (113), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E HGS VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGS-------EVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + VD ++ R++ R G P + + ++ L+K P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIYRVSNRTGIAPGKTVL-EVEKKLVKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|23010115|ref|ZP_00050917.1| COG0177: Predicted EndoIII-related endonuclease [Magnetospirillum
magnetotacticum MS-1]
Length = 271
Score = 48.1 bits (113), Expect = 0.041, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS-LQHIAF 1084
A RIK L + E G++DL +L + D+ + +L I G+G K+ V S L+ A
Sbjct: 130 APRIKAVLAAVRERVGALDLAFLEEMSVDEARGWLEGIPGIGPKTSAAVLSFSTLRMPAL 189
Query: 1085 PVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHY 1144
PVD + R+A R G + + G H L + P W + LY+ H
Sbjct: 190 PVDSHHHRVAQRTGLIGPKVDVGPSHGMLRAQLPAD-------W------SAQKLYDNHE 236
Query: 1145 QMITFGKIFCKKRSPNCGACPLRGEC 1170
++ G+ C RSP C C L C
Sbjct: 237 VLMLHGQRVCFHRSPACDRCVLLDIC 262
>gi|418032607|ref|ZP_12671090.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471470|gb|EHA31591.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 185
Score = 48.1 bits (113), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 38 ELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DELVKLPGVGRKT 88
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+++ P D W
Sbjct: 89 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKED------WS- 141
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 142 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLSLCR 172
>gi|415725253|ref|ZP_11470256.1| endonuclease III [Gardnerella vaginalis 00703C2mash]
gi|388062058|gb|EIK84694.1| endonuclease III [Gardnerella vaginalis 00703C2mash]
Length = 237
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ V + + FPVD +V R+ RLGWV + +E
Sbjct: 135 LTKLPGVGRKTANVVLGNAFKIPGFPVDTHVMRVTSRLGWVSEASAKAKDAAKIEREVTA 194
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
C+ ++ L +++I G++ C R+P CG CPLR C
Sbjct: 195 ------------CFAPEE-WTNLSHRLILHGRMICIARNPRCGDCPLRFLC 232
>gi|346225871|ref|ZP_08847013.1| endonuclease III [Anaerophaga thermohalophila DSM 12881]
Length = 216
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 27/136 (19%)
Query: 1038 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1097
E HG + PD VKE L + G+G K+ + + Q VD +V R++ R+
Sbjct: 100 EFHGEV---------PDDVKE-LQRLPGVGRKTANVIASVVYQKPVLAVDTHVFRVSARI 149
Query: 1098 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKR 1157
G P + L+K YL + L H+ +I G+ C R
Sbjct: 150 GLTVNAKTPIEAEKQLIK-----------------YLPEDLLPIAHHWLILHGRYVCLAR 192
Query: 1158 SPNCGACPLRGECKHF 1173
P C C L+ CK++
Sbjct: 193 KPKCDQCGLKMWCKYY 208
>gi|300857069|ref|YP_003782053.1| endonuclease III [Clostridium ljungdahlii DSM 13528]
gi|300437184|gb|ADK16951.1| endonuclease III [Clostridium ljungdahlii DSM 13528]
Length = 214
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+++ G+G K+ + V + A VD +V R++ RLG + P + + L+K
Sbjct: 109 EQLIELPGVGRKTADVVLSNAFGVPAIAVDTHVFRVSNRLG-IAKGTTPHKVEMELMKNI 167
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P +W + H+ +I G+ CK R P+C CPL C++F
Sbjct: 168 P------KSMWS-----------DSHHYLIWHGRRICKSRKPDCEHCPLAPYCEYF 206
>gi|10640069|emb|CAC11921.1| endonuclease III related protein [Thermoplasma acidophilum]
Length = 197
Score = 48.1 bits (113), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
PD + E L+ + G+GLK+ + V A VD +V RI+ R+GW + P +
Sbjct: 87 PDSIDE-LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFRISHRIGWSSAR-TPEETSEE 144
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L + PV +Q+ P M+ FGK C+ P C CP+ C++
Sbjct: 145 LERIIPV--DLQVGFNP---------------MMVEFGKAICRPVRPLCDRCPVSEYCRY 187
Query: 1173 FASAV 1177
+ V
Sbjct: 188 YEEKV 192
>gi|312143859|ref|YP_003995305.1| endonuclease III [Halanaerobium hydrogeniformans]
gi|311904510|gb|ADQ14951.1| endonuclease III [Halanaerobium hydrogeniformans]
Length = 216
Score = 48.1 bits (113), Expect = 0.044, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P K KE LL + G+G K+ V + AFPVD +V R++ RL +
Sbjct: 109 PHKRKE-LLKLAGVGRKTANVVLANAFDKAAFPVDTHVFRVSSRLA------------LS 155
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
K V +K L P+ ++D LH+ +I G+ CK ++P+C C C +
Sbjct: 156 SAKNPEVTEKELTELIPKKYWID------LHHWLIDHGRAICKAQNPDCDNCFCSHLCPY 209
Query: 1173 FASAV 1177
+ + V
Sbjct: 210 YKNIV 214
>gi|45550361|ref|NP_610078.2| CG9272 [Drosophila melanogaster]
gi|45445193|gb|AAF53949.2| CG9272 [Drosophila melanogaster]
Length = 388
Score = 47.8 bits (112), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPL--PGDL 1109
PD VK+ L+ + G+G K ++ I VDV+V R++ RLGWVP +P P
Sbjct: 272 PDNVKD-LVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNRLGWVP-KPTKEPEQT 329
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ L K P LW E+++ + FG+ C PNCG C +
Sbjct: 330 RVALEKWLP------FSLW-----------SEVNHLFVGFGQTICTPVKPNCGECLNKDI 372
Query: 1170 C 1170
C
Sbjct: 373 C 373
>gi|195351989|ref|XP_002042498.1| GM23290 [Drosophila sechellia]
gi|194124367|gb|EDW46410.1| GM23290 [Drosophila sechellia]
Length = 378
Score = 47.8 bits (112), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AF 1084
A +K+ ++ L++ +GS D+ PD VK+ L+ + G+G K ++ I
Sbjct: 243 AKYLKQTVDILMDKYGS-DI-------PDNVKD-LVALPGVGPKMAHICMAVAWNKITGI 293
Query: 1085 PVDVNVGRIAVRLGWVPLQPL--PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
VDV+V R++ RLGWVP +P P + L K P LW E+
Sbjct: 294 GVDVHVHRLSNRLGWVP-KPTKEPEQTRVALEKWLP------FSLW-----------SEV 335
Query: 1143 HYQMITFGKIFCKKRSPNCGAC 1164
++ + FG+ C PNCG C
Sbjct: 336 NHLFVGFGQTICTPVKPNCGEC 357
>gi|83313269|ref|YP_423533.1| EndoIII-related endonuclease [Magnetospirillum magneticum AMB-1]
gi|82948110|dbj|BAE52974.1| Predicted EndoIII-related endonuclease [Magnetospirillum magneticum
AMB-1]
Length = 211
Score = 47.8 bits (112), Expect = 0.044, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E + +I+ G A + E RL+ LHG VP D+ L + G+G
Sbjct: 69 EEGLVQSIRTIGLYKTKAKNVIELSRRLLSLHGG-------QVPHDRAA--LEALPGVGR 119
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD + R+A R G P + + + L+K P
Sbjct: 120 KTANVVLNIAFGEPTIAVDTHCFRVANRTGLAPGKTVEA-VEQGLMKATPA--------- 169
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K L H+ +I G+ CK R P+C AC +R C
Sbjct: 170 --------KWLQHAHHWLILHGRYTCKARKPDCAACVVRELC 203
>gi|87124068|ref|ZP_01079918.1| endonuclease III [Synechococcus sp. RS9917]
gi|86168637|gb|EAQ69894.1| endonuclease III [Synechococcus sp. RS9917]
Length = 217
Score = 47.8 bits (112), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
+A+ +E EI I++ G A +K+ + LVE+HG VP + E L
Sbjct: 63 QALAALEEGEILSFIRQLGLAKTKARHLKKLAHILVEIHGG-------EVP--RSFEELE 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGW---VPLQPLPGDLHIHLLKEYP 1118
+ G+G K+ V + AFPVD ++ R+A R G + ++ DL KE
Sbjct: 114 ALPGVGHKTASVVMAQAFGVPAFPVDTHIHRLAQRWGLSKGLSVERTEADLKALFPKEA- 172
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
W R LH Q+I +G+ C R + CPL
Sbjct: 173 ---------WNR-----------LHLQIIFYGRDHCTARGCDGTVCPL 200
>gi|317128625|ref|YP_004094907.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315473573|gb|ADU30176.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 221
Score = 47.8 bits (112), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A IK+ L+E + +P +K + L+ + G+G K+
Sbjct: 72 ELENDIRSIGLFRSKAKNIKKLCQSLIEDYNG-------EIPKEKSE--LVKLAGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P
Sbjct: 123 ANVVASVAFNEPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKLP------------ 170
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ H+++I FG+ CK +SP C CPL C+
Sbjct: 171 -----KEEWSVSHHRLIFFGRYHCKAQSPRCNECPLLSLCR 206
>gi|116253944|ref|YP_769782.1| endonuclease III [Rhizobium leguminosarum bv. viciae 3841]
gi|115258592|emb|CAK09696.1| putative endonuclease III [Rhizobium leguminosarum bv. viciae 3841]
Length = 268
Score = 47.8 bits (112), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
++ L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ + L+K
Sbjct: 147 RDELVRLPGVGRKTANVVLSMAFGRATMAVDTHIFRIANRIRLAPGK-TPDEVEVRLMKV 205
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P LY H+ +I G+ CK R P C C + CK
Sbjct: 206 IP-----------------NHYLYHAHHWLILHGRYICKARRPECERCIIADLCK 243
>gi|404494240|ref|YP_006718346.1| endonuclease III-like protein [Pelobacter carbinolicus DSM 2380]
gi|77546248|gb|ABA89810.1| endonuclease III-related protein [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 47.8 bits (112), Expect = 0.046, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFP 1085
A R++ F L+E H DL+ + + P +V++ LL +G+G ++ + + L + +F
Sbjct: 101 AQRLQLFATCLLEKHQG-DLDAMLSGPLSQVRQTLLTFKGIGPETADSILLYAGHRPSFV 159
Query: 1086 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHY 1144
VD R+ R G L GD + Y + + M PR Q L+ E H
Sbjct: 160 VDAYTRRLFKRYG-----VLEGD------ETYEDIRALFMAHLPR-----QVDLFNEYHA 203
Query: 1145 QMITFGKIFCKKRSPNCGACPLRGEC 1170
++ K FC+KR P C CPL+ EC
Sbjct: 204 LIVEQCKTFCRKR-PLCENCPLQPEC 228
>gi|255037376|ref|YP_003087997.1| endonuclease III [Dyadobacter fermentans DSM 18053]
gi|254950132|gb|ACT94832.1| endonuclease III [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKE 1058
D E++ ++ E+ I+ N A + LVE H + P V++
Sbjct: 61 DPESLAASNTEEVFTYIRSISYPNNKAKHLVGMARMLVEQFHSEV---------PSTVED 111
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L + G+G K+ + + A VD +V R++ RLG VP+ + P
Sbjct: 112 -LQKMPGVGRKTANVIASVIFSMPAMAVDTHVFRVSRRLGLVPMT-----------AKTP 159
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
+ + ++ + ++ + +++ H+ +I G+ C R+P C CPL C++F V
Sbjct: 160 LAVEREL-----VTHIPKHLIHKAHHWLILHGRYVCTARNPQCFQCPLSPFCRYFEKNV 213
>gi|402300275|ref|ZP_10819796.1| endonuclease III [Bacillus alcalophilus ATCC 27647]
gi|401724572|gb|EJS97921.1| endonuclease III [Bacillus alcalophilus ATCC 27647]
Length = 216
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K ++ L+ + G+G K+ V ++ A VD +V R++ RLG + ++ L+
Sbjct: 107 KERDELVKLAGVGRKTANVVTSVAFGVPAIAVDTHVERVSKRLGICRWKDNVREVEETLM 166
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ P ++ + H+Q+I FG+ CK +SP C CPL C+
Sbjct: 167 KKIP-----------------EERWSDTHHQLIFFGRYHCKAQSPQCPECPLLSMCR 206
>gi|256811111|ref|YP_003128480.1| HhH-GPD family protein [Methanocaldococcus fervens AG86]
gi|256794311|gb|ACV24980.1| HhH-GPD family protein [Methanocaldococcus fervens AG86]
Length = 211
Score = 47.8 bits (112), Expect = 0.047, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E + DE ++ + IK G N+ A R+K +V+ +GS + + +++ LL
Sbjct: 61 EKILNIDEDKLKELIKPAGFYNLKAKRLKNTTKFIVDNYGSTEGMAKTDKDTLTLRKELL 120
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
I G+G ++ + + L +L +F VD R+ RLG ++ E D
Sbjct: 121 SINGVGKETADSILLYALDRESFVVDAYTKRMFSRLG--------------IINEKAKYD 166
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
+I+ ++ + D + E H ++ K FC+K+ P C CP+
Sbjct: 167 EIKE-IFEKSLPKDLEIYKEYHALIVEHCKKFCRKK-PLCEKCPI 209
>gi|452976633|gb|EME76448.1| endonuclease III [Bacillus sonorensis L12]
Length = 220
Score = 47.8 bits (112), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ L+E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLCKMLIEEYGG-------EVPRDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG+ + ++ L+K+ P + W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWKDSVTEVEKTLMKKIPESE------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK + P C CPL C+
Sbjct: 176 ----------ATHHRLIFFGRYHCKAQRPKCEECPLFSLCR 206
>gi|403737479|ref|ZP_10950275.1| endonuclease III [Austwickia chelonae NBRC 105200]
gi|403192427|dbj|GAB77045.1| endonuclease III [Austwickia chelonae NBRC 105200]
Length = 248
Score = 47.8 bits (112), Expect = 0.047, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 35/198 (17%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH-GSIDLEWLRNVPPDKVKE 1058
D A+ AD +E+ + I+ G A + + L+ H G + P ++KE
Sbjct: 77 DATALAAADRTELEEIIRPIGFHRNKADALLKLSAELLARHDGRV---------PGRLKE 127
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
L+ + G+G K+ V + VD +VGR+A R GW E P
Sbjct: 128 -LVALSGVGRKTANVVLGNAFGVPGITVDTHVGRLARRFGWTT-------------AEDP 173
Query: 1119 VMDKIQM-YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC-KHFASA 1176
V+ + ++ L+PR K L + +I G+ C R P CGAC + C H
Sbjct: 174 VVVETEVGALFPR------KEWTMLSHTLIFHGRRTCHARRPACGACTVASLCPSHGIGE 227
Query: 1177 VASARFAL---PGPSEKG 1191
AR A PGP G
Sbjct: 228 TDPARAAALVKPGPVATG 245
>gi|424886110|ref|ZP_18309721.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393177872|gb|EJC77913.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 260
Score = 47.8 bits (112), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+K
Sbjct: 139 REELVKLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGK-TPDEVEARLMKV 197
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + LY H+ +I G+ CK R P C C + CK
Sbjct: 198 IP-----------------KHYLYHAHHWLILHGRYTCKARRPECERCVIADLCK 235
>gi|374853927|dbj|BAL56822.1| DNA repair protein HhH-GPD [uncultured candidate division OP1
bacterium]
Length = 197
Score = 47.8 bits (112), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
E ++A+ I+ G A ++K F+ L H DL + P K++ LL + G+G
Sbjct: 40 SEDQLAELIRPAGYFRQKAKKLKVFITHLYA-HYDGDLPTMLAQPTSKLRAELLSLWGIG 98
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + L + F VD RI RLG L E DK+Q L
Sbjct: 99 PETADSILLYAAHKPVFVVDAYTQRICSRLG--------------LASEKISYDKLQE-L 143
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ R K E H ++ GK C+ + P C C L EC+
Sbjct: 144 FMRKLPKSVKLFNEYHALLVRHGKEICRPK-PRCARCVLAHECQ 186
>gi|239623210|ref|ZP_04666241.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522176|gb|EEQ62042.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 261
Score = 47.8 bits (112), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
E AD E+ I G ++ A I LVE G PD + E L
Sbjct: 115 EKFAAADLKELEKDIHSTGFYHMKAKNIIACCKDLVEKFG--------GQVPDTI-EDLT 165
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ +R + VD +V RI+ +LG + P + L+K P
Sbjct: 166 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYDLMKVLPK-- 222
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
D L+ +H +IT G+ C R P CG C LR +C
Sbjct: 223 -------------DHWILWNIH--IITLGRTICIARRPGCGQCFLREDC 256
>gi|403350158|gb|EJY74527.1| hypothetical protein OXYTRI_04215 [Oxytricha trifallax]
Length = 372
Score = 47.8 bits (112), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E ++ I++ G N A +K+ +++E + I VP D K L+ + G+G
Sbjct: 100 EQDLNRLIEKVGFHNKKAIYLKKAARQIIEDYKGI-------VPSDYDK--LIALPGVGP 150
Query: 1069 KSVECVRLLSLQH-----IAFPVDVNVGRIAVRLGWVPLQP-LPGDLHIHLLKEYPVMDK 1122
K L LQ+ + VD +V RIA RL WVP Q PG+ L+E+ DK
Sbjct: 151 KMAH----LLLQNCFDKTVGISVDTHVHRIANRLKWVPKQTKTPGETA-KALQEWLPQDK 205
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC----KHFASAVA 1178
W ++ ++ ++ FG++ CK P C C R C K +
Sbjct: 206 -----WEKI-----------NWMLVGFGQMICKPIGPRCYECKARDLCPFEPKSKPPTKS 249
Query: 1179 SARFALPGPSEKGIVTS 1195
++ A+ ++ G++ S
Sbjct: 250 KSKIAIVKSNDDGVINS 266
>gi|403238043|ref|ZP_10916629.1| endonuclease III [Bacillus sp. 10403023]
Length = 219
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ + I+ G A I++ L+E +G I +P D+ + L + G+G K+
Sbjct: 72 ELQNDIRSIGLYRNKAKNIQKLCQMLLEDYGGI-------LPQDR--DELTKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG+ + ++ L+K+ P
Sbjct: 123 ANVVVSVAFGIPAIAVDTHVERVSKRLGFCRWKDSVLEVEKTLMKKVP------------ 170
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
++ H++MI FG+ CK ++P C CPL C+
Sbjct: 171 -----KEEWSATHHRMIFFGRYHCKAQNPQCEICPLLEVCR 206
>gi|209551017|ref|YP_002282934.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209536773|gb|ACI56708.1| endonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 260
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
++ L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+K
Sbjct: 139 RDELVKLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIKLAPGK-TPDEVEARLMKV 197
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P Q LY H+ +I G+ CK R P C C + CK
Sbjct: 198 IP-----------------QHYLYHAHHWLILHGRHTCKARRPECERCVIADLCK 235
>gi|420239451|ref|ZP_14743771.1| endonuclease III [Rhizobium sp. CF080]
gi|398080505|gb|EJL71315.1| endonuclease III [Rhizobium sp. CF080]
Length = 267
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 1005 RCADESEIADAIKERGQQNII--AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
+ AD E A+ E G I G + ++ L + E+ VP K +E L+
Sbjct: 94 KIADTPEKMLALGEEGVTQYIKTIGLYRNKAKNVIALCRMLIDEFGSEVP--KTREELIR 151
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ V ++ VD +V RIA RL P + P ++ +LLK P
Sbjct: 152 LPGVGRKTANVVMSMAFGVPTLAVDTHVFRIANRLLMAPGK-TPDEVEENLLKVIP---- 206
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
DQ L+ H+ +I G+ CK R P C C + C+
Sbjct: 207 ------------DQ-YLFHAHHWLILHGRYCCKARKPECERCVIADLCR 242
>gi|390935585|ref|YP_006393090.1| endonuclease III [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389571086|gb|AFK87491.1| endonuclease III [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 214
Score = 47.8 bits (112), Expect = 0.050, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
VP D E L+++ G+G K+ V + + A VD +V R++ R+G +
Sbjct: 106 VPDDM--EKLMELPGVGRKTANVVISNAFKKDAIAVDTHVFRVSNRIGLAESDDV----- 158
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L EY +MD I LW H+ +I G+ C R P C CP+ C
Sbjct: 159 --LKTEYQLMDIIPKNLWSLS-----------HHLLIYHGRNICAARKPKCDICPINHIC 205
Query: 1171 KHFASAV 1177
K + + +
Sbjct: 206 KFYKNFI 212
>gi|375292201|ref|YP_005126740.1| endonuclease III [Corynebacterium diphtheriae INCA 402]
gi|371581872|gb|AEX45538.1| endonuclease III [Corynebacterium diphtheriae INCA 402]
Length = 251
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA A+E+E+ + I+ G A + +LV ++ +P D E+L+
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVT-------DFSGEIPRDL--EHLV 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR + VD + GR+ RLG + Q P + E+ + D
Sbjct: 126 SLPGVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHEIAD 178
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
I+ W T++ +++I G+ C R+ CGAC L C + A
Sbjct: 179 LIEKKEW---------TMFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGEA 222
>gi|256420205|ref|YP_003120858.1| endonuclease III [Chitinophaga pinensis DSM 2588]
gi|256035113|gb|ACU58657.1| endonuclease III [Chitinophaga pinensis DSM 2588]
Length = 215
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ + G+G K+ + + Q VD +V R++ R+G P LLK
Sbjct: 112 LVKLPGVGRKTANVITSVVHQQPNMAVDTHVFRVSARIGLTTNATTPLQTEKQLLK---- 167
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177
Y+ + ++ H+ +I G+ C RSP C C LR CK++ S V
Sbjct: 168 -------------YIPTEKVHIAHHWLILHGRYICVARSPKCEECGLRPVCKYYHSLV 212
>gi|157363140|ref|YP_001469907.1| HhH-GPD family protein [Thermotoga lettingae TMO]
gi|157313744|gb|ABV32843.1| HhH-GPD family protein [Thermotoga lettingae TMO]
Length = 223
Score = 47.8 bits (112), Expect = 0.050, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWL-RNVPPDKVKEYLLDIEGLGLK 1069
+++ IK G N+ R+K L+ L E + D L RN+ +E LL++ G+G +
Sbjct: 72 QLSQLIKSAGFYNLKTVRLKNLLSLLSEY--NFDFHSLSRNI----TREILLNVNGIGKE 125
Query: 1070 SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL-- 1127
+ + + L + F VD R+ RLG +L + DKIQ
Sbjct: 126 TADSILLYAFDKPVFVVDNYTKRVFERLG--------------ILNKKDSYDKIQAIFHD 171
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P+ D E H ++ K C K P C C ++G C
Sbjct: 172 LPK----DTGLYKEYHALIVKHAKDICLKNKPKCNICCVKGFC 210
>gi|403251702|ref|ZP_10918031.1| putative endoIII-related endonuclease [actinobacterium SCGC
AAA027-L06]
gi|402914990|gb|EJX35984.1| putative endoIII-related endonuclease [actinobacterium SCGC
AAA027-L06]
Length = 233
Score = 47.8 bits (112), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 31/170 (18%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVE-LHGSIDLEWLRNVPPDKVKEYLLDIEG 1065
AD +I +K G A IK N++++ G + P+K+ + L+ + G
Sbjct: 73 ADIKDIQRLVKSTGFYRAKAKNIKGLSNQIMDDFSGKV---------PNKLDD-LIQLPG 122
Query: 1066 LGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPVMDKIQ 1124
+G K+ V + VD + GR++ R GW L P+ + + L
Sbjct: 123 VGRKTANVVLGHAFGIPGITVDTHFGRLSRRFGWSKNLDPVKVEFEVGEL---------- 172
Query: 1125 MYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+ QK L +MI G+ C R P CGAC L C F
Sbjct: 173 ---------ITQKEWTNLSQRMIWHGRRVCHSRKPACGACSLAKLCPSFG 213
>gi|440227974|ref|YP_007335065.1| endonuclease III [Rhizobium tropici CIAT 899]
gi|440039485|gb|AGB72519.1| endonuclease III [Rhizobium tropici CIAT 899]
Length = 259
Score = 47.8 bits (112), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ +E L+ + G+G K+ V ++ VD ++ RIA RL P + P ++ L+
Sbjct: 135 RTREELITLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRLLLAPGK-TPDEVEHRLM 193
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K P DQ LY H+ +I G+ CK R P C C + C+
Sbjct: 194 KIIP----------------DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|424924648|ref|ZP_18348009.1| endonuclease III [Pseudomonas fluorescens R124]
gi|404305808|gb|EJZ59770.1| endonuclease III [Pseudomonas fluorescens R124]
Length = 212
Score = 47.8 bits (112), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ +++ IK G N A + E LVELH VP + +E L
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRMLVELHNG-------EVP--QTREELEA 113
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G K+ V + + + VD ++ R++ R G P K ++K
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPG------------KNVVEVEK 161
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
M P+ LD H+ +I G+ C R P CG+C + C++
Sbjct: 162 KLMKFVPKDYLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|393788681|ref|ZP_10376808.1| endonuclease III [Bacteroides nordii CL02T12C05]
gi|392654361|gb|EIY48009.1| endonuclease III [Bacteroides nordii CL02T12C05]
Length = 215
Score = 47.8 bits (112), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL-QPLPGDLHIHLLKE 1116
E L+ + G+G K+ ++ + A VD +V R++ R+G V P + L+K
Sbjct: 110 EELVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVGANHTTPFSVEKELMKN 169
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
P +K + H+ +I G+ C+ R+P C C L+ CK+F A
Sbjct: 170 IP-----------------EKLVPIAHHWLILHGRYVCQARTPKCDTCGLQMMCKYFQEA 212
>gi|384567793|ref|ZP_10014897.1| endonuclease III [Saccharomonospora glauca K62]
gi|384523647|gb|EIF00843.1| endonuclease III [Saccharomonospora glauca K62]
Length = 227
Score = 47.8 bits (112), Expect = 0.051, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 29/171 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +E+ + I+ G A + LVE HG P K+ + L+ + G+
Sbjct: 59 ADRTELEELIRPTGFFRNKATSLMGLGAALVERHGG--------EVPGKLDD-LVKLPGV 109
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQM- 1125
G K+ V + VD + GR+ R GW E PV + ++
Sbjct: 110 GRKTANVVLGEAFGVPGITVDTHFGRLVRRWGWTD-------------SEDPVKVEHEIG 156
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
L+PR K L +++I G+ C R P CGACPL +C F +
Sbjct: 157 SLFPR------KDWTLLSHRVIFHGRRVCHARKPACGACPLAKDCPSFGAG 201
>gi|40714570|gb|AAR88543.1| RE40459p [Drosophila melanogaster]
Length = 391
Score = 47.8 bits (112), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPL--PGDL 1109
PD VK+ L+ + G+G K ++ I VDV+V R++ RLGWVP +P P
Sbjct: 277 PDNVKD-LVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNRLGWVP-KPTKEPEQT 334
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ L K P LW E+++ + FG+ C PNCG C +
Sbjct: 335 RVALEKWLP------FSLW-----------SEVNHLFVGFGQTICTPVKPNCGECLNKDI 377
Query: 1170 C 1170
C
Sbjct: 378 C 378
>gi|339442257|ref|YP_004708262.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
gi|338901658|dbj|BAK47160.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
Length = 214
Score = 47.8 bits (112), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L+ + G+G K+ +R + + VD +V RI+ RLG+ Q P + L+K+
Sbjct: 111 EDLISLPGVGRKTANVIRGNIYKDPSIVVDTHVKRISNRLGFTKEQD-PEKIEYDLMKKL 169
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P D Y + Q+IT G+ C RSP CG C L CK
Sbjct: 170 PK---------------DHWISYNM--QIITLGRTICTARSPKCGECFLSDLCK 206
>gi|404494924|ref|YP_006719030.1| endonuclease III-like protein [Geobacter metallireducens GS-15]
gi|418067578|ref|ZP_12704917.1| HhH-GPD family protein [Geobacter metallireducens RCH3]
gi|78192552|gb|ABB30319.1| endonuclease III-related protein [Geobacter metallireducens GS-15]
gi|373558576|gb|EHP84912.1| HhH-GPD family protein [Geobacter metallireducens RCH3]
Length = 223
Score = 47.8 bits (112), Expect = 0.053, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+R + +A+AI+ G N+ + R+K+F L E HG LE + ++E LL
Sbjct: 62 EALRDVPAASLAEAIRPAGYFNVKSLRLKDFAGYLWERHGG-SLERMFAGDWHALREELL 120
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G ++ + + L + F VD R+ LG +L D
Sbjct: 121 GVRGIGPETADSILLYAGGKPTFVVDAYTKRLFAALG--------------ILNGSAGYD 166
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+++ L D + E H ++ GK C+KR P C C L C+
Sbjct: 167 EVRDLFMANLP-PDVRLFNEYHALIVEHGKRHCRKR-PLCPGCGLHLFCR 214
>gi|386867584|ref|YP_006280578.1| EndoIII-related endonuclease [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701667|gb|AFI63615.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 247
Score = 47.8 bits (112), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A ++ I+ G ++ A I ++VE G VP + E L
Sbjct: 69 EALADARLEDVESIIRPLGFYHVKAEHIIAVARQIVERFGG-------EVP--QTMEELT 119
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + FPVD +V R+ RL W +K +
Sbjct: 120 SLPGVGRKTANVVLGNAFHVPGFPVDTHVIRVTGRLHW----------RDDWMKANTTPE 169
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+I+ + C+ + + +L +++I FG+ C RSP C CPL C
Sbjct: 170 RIEQEI--TGCFPESE-WTDLSHRLIIFGRNICTSRSPECETCPLLPTC 215
>gi|451812331|ref|YP_007448785.1| endonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778233|gb|AGF49181.1| endonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 210
Score = 47.8 bits (112), Expect = 0.054, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L + G+G K+ V ++ VD +V R++ R G + P D+ L+K
Sbjct: 109 REELESLPGVGRKTSNVVLNIAFNQPTIAVDTHVFRVSNRTG-IAKGKNPLDVEKELVKN 167
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P +K L+ H+ +I FG+ C KR P C C ++ C+++
Sbjct: 168 VP-----------------EKYLHNAHHLLILFGRYICIKRKPKCNQCIIKDLCEYY 207
>gi|399039507|ref|ZP_10735069.1| endonuclease III [Rhizobium sp. CF122]
gi|398062392|gb|EJL54168.1| endonuclease III [Rhizobium sp. CF122]
Length = 243
Score = 47.8 bits (112), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E + D IK G A + LV+ GS+ VP + ++ L+ + G+G
Sbjct: 83 EERVRDYIKTIGLYRNKAKNVIALSRMLVDKFGSV-------VP--QTRDELVTLPGVGR 133
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RIA R+ P + P ++ L+K P
Sbjct: 134 KTANVVLSMAFGQATMAVDTHIFRIANRIKLAPGKT-PDEVEERLMKVVP---------- 182
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ LY H+ +I G+ CK R P C C + CK
Sbjct: 183 -------RHYLYHAHHWLILHGRYTCKARKPECERCVIADICK 218
>gi|225574096|ref|ZP_03782707.1| hypothetical protein RUMHYD_02161 [Blautia hydrogenotrophica DSM
10507]
gi|225038696|gb|EEG48942.1| endonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 210
Score = 47.8 bits (112), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 29/168 (17%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD E+ IK G + A I RLV +G VP D E L+ + G+
Sbjct: 68 ADLRELEQDIKPTGFYHNKAKNIIGCAQRLVNEYGG-------EVPSDL--EALVSLPGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV-MDKIQM 1125
G K+ +R + VD +V RI+ RLG +E PV ++K M
Sbjct: 119 GRKTANVIRGNIFHEPSVVVDTHVKRISRRLGLTR-------------EEDPVKIEKDLM 165
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ PR + LY + Q+ITFG+ C RSP C C L C +
Sbjct: 166 KVLPR----EHWILYNI--QIITFGRQICFARSPKCEECFLTKYCSEY 207
>gi|452820109|gb|EME27156.1| HhH-GPD base excision DNA repair protein-related protein [Galdieria
sulphuraria]
Length = 203
Score = 47.8 bits (112), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 1000 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
DW V A ++ + I+ G A RIKE L L + G + LE LR + V++
Sbjct: 110 DWNQVIEAPLRDVEECIRVAGLAKTKAARIKELLETLQKERGELSLESLRGSCTETVEKE 169
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFP 1085
L +G+GLK++ CV SL FP
Sbjct: 170 LSRFKGVGLKTMACVSAFSLGLQVFP 195
>gi|319902841|ref|YP_004162569.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Bacteroides helcogenes P 36-108]
gi|319417872|gb|ADV44983.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Bacteroides helcogenes P 36-108]
Length = 224
Score = 47.8 bits (112), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHI 1111
PD ++E L+ + G+G K+ ++ ++ A VD +V R++ RLG V + P +
Sbjct: 106 PDTLEE-LIKLPGVGRKTANVIQSVAFNKAAMAVDTHVFRVSHRLGLVSDKCTTPFSVEK 164
Query: 1112 HLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
L+K Y+ + + H+ +I G+ C+ R+P C C L+ CK
Sbjct: 165 ELVK-----------------YIPEADISIAHHWLILHGRYTCQARTPQCDECGLQLLCK 207
Query: 1172 HF 1173
++
Sbjct: 208 YY 209
>gi|167630835|ref|YP_001681334.1| endonuclease iii [Heliobacterium modesticaldum Ice1]
gi|167593575|gb|ABZ85323.1| endonuclease iii [Heliobacterium modesticaldum Ice1]
Length = 203
Score = 47.8 bits (112), Expect = 0.056, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 39/178 (21%)
Query: 1002 EAVRCADESEIADAIKE------RGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDK 1055
EA+ + E+ D IK +G+ + A RI LVE HG VP
Sbjct: 47 EAMLLLTQEELEDLIKSIGLYRNKGRNILAACRI------LVEKHGG-------QVP--G 91
Query: 1056 VKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
+E L + G+G K+ V + Q A VD +V R++ RLG + + +
Sbjct: 92 YREGLEKLPGVGRKTANVVLAEAFQEPAIAVDTHVFRVSNRLGLAQAKDV-------VKT 144
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
E +M+ I LW + H+ +I G+ C R P CG C L C+ +
Sbjct: 145 EQDLMNNIPRDLWAKA-----------HHWLIFHGRQVCHARKPACGVCRLAECCREY 191
>gi|302390179|ref|YP_003826000.1| 8-oxoguanine DNA glycosylase [Thermosediminibacter oceani DSM 16646]
gi|302200807|gb|ADL08377.1| 8-oxoguanine DNA glycosylase domain protein [Thermosediminibacter
oceani DSM 16646]
Length = 292
Score = 47.8 bits (112), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 1002 EAVRCADESEIADA-IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
E + E++I D RG+ I A R+ G I L+ L +P + ++YL
Sbjct: 152 EVLASLSEAQIRDTRCGFRGKYVIAAARMVA--------GGDIVLDELEKLPTGEARDYL 203
Query: 1061 LDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY-- 1117
+ I G+G K +CV L SL+ AFPVDV + R+ L + + +P + L+E+
Sbjct: 204 MKIPGVGRKIADCVLLFSLRKFDAFPVDVWIKRVVEHL-YFDGREMP----VKKLQEFAE 258
Query: 1118 ----PVMDKIQMYL--WPRLCYLDQK 1137
P+ Q YL + R C+ D K
Sbjct: 259 NRFGPLAGFAQQYLFHYTRTCWSDIK 284
>gi|390952666|ref|YP_006416425.1| putative endonuclease III-like protein [Thiocystis violascens DSM
198]
gi|390429235|gb|AFL76300.1| putative endonuclease III-like protein [Thiocystis violascens DSM
198]
Length = 232
Score = 47.8 bits (112), Expect = 0.057, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD 1062
A+ D +E+A+A++ G N+ A R+ F VE + LE + + ++ LL
Sbjct: 72 AILALDPAELAEALRPAGYFNLKARRLSAFC---VEYLAAGGLEGWGALDTETLRRALLK 128
Query: 1063 IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122
+ G+G ++ + + L + + F VD RI RLG + GD ++
Sbjct: 129 VNGIGPETADDMLLYAFERPVFVVDAYTRRIFARLG-----AIAGDEAYEQIRA-----G 178
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ L P D E H ++ K C+ R P C CPLR C
Sbjct: 179 FEQTLGP-----DVPLFKEYHALIVQHAKQACRAR-PICPDCPLREAC 220
>gi|435850481|ref|YP_007312067.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661111|gb|AGB48537.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 208
Score = 47.4 bits (111), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 1003 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSIDLEWLRNVPPDKVKEYLL 1061
A+ AD ++ IK+ G + +GRI E L+ E G + PD + + LL
Sbjct: 59 AMAAADPEDLEKLIKDVGFYRVKSGRIIEISRILLQEYEGKV---------PDNIND-LL 108
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ CV + + A VD +V RI+ RL V P + + L + P
Sbjct: 109 KLPGVGRKTANCVLTYAFRKDAIAVDTHVHRISNRLCLVTTNA-PEETEVELERVVP--- 164
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LW Y+++ ++ FG+ C+ SP C C L C
Sbjct: 165 ---RELWQ---YVNE--------LLVRFGQDVCRPISPKCDICVLEDLC 199
>gi|257064026|ref|YP_003143698.1| endonuclease III [Slackia heliotrinireducens DSM 20476]
gi|256791679|gb|ACV22349.1| endonuclease III [Slackia heliotrinireducens DSM 20476]
Length = 210
Score = 47.4 bits (111), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 1058 EYLLDIEGLGLKS---VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDLHIHL 1113
E L + G+G K+ V C + Q IA VD +V RIA RLG+ P + L
Sbjct: 108 EGLQSLPGVGRKTANVVMCQAFRNAQGIA--VDTHVFRIAHRLGFATRNDDTPDKVEAKL 165
Query: 1114 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LK YP D W LY +++Q + FG+ FC R+P C CP+ C
Sbjct: 166 LKVYPQTD------W----------LY-INHQWVHFGREFCSARNPKCLTCPIHDLC 205
>gi|220931920|ref|YP_002508828.1| endonuclease III [Halothermothrix orenii H 168]
gi|219993230|gb|ACL69833.1| endonuclease III [Halothermothrix orenii H 168]
Length = 212
Score = 47.4 bits (111), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
LL + G+G K+ V + FPVD +V RI+ RLG V K
Sbjct: 112 LLKLPGVGRKTANVVLACAFNKKTFPVDTHVFRISNRLGLVS------------AKRTNE 159
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+K M + P ++D +H+ +I G+ CK R+P C C L+ C ++
Sbjct: 160 AEKQLMEVIPEEKWVD------MHHWLIFHGREVCKARNPACHFCELKPFCNYY 207
>gi|23335629|ref|ZP_00120863.1| COG0177: Predicted EndoIII-related endonuclease [Bifidobacterium
longum DJO10A]
gi|23464990|ref|NP_695593.1| endonuclease III [Bifidobacterium longum NCC2705]
gi|189440057|ref|YP_001955138.1| EndoIII-related endonuclease [Bifidobacterium longum DJO10A]
gi|227545733|ref|ZP_03975782.1| DNA-(apurinic or apyrimidinic site) lyase [Bifidobacterium longum
subsp. longum ATCC 55813]
gi|239622592|ref|ZP_04665623.1| endonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|296453434|ref|YP_003660577.1| endonuclease III [Bifidobacterium longum subsp. longum JDM301]
gi|312133395|ref|YP_004000734.1| nth [Bifidobacterium longum subsp. longum BBMN68]
gi|322688415|ref|YP_004208149.1| endonuclease III [Bifidobacterium longum subsp. infantis 157F]
gi|322690434|ref|YP_004220004.1| endonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
gi|384202230|ref|YP_005587977.1| endonuclease III [Bifidobacterium longum subsp. longum KACC 91563]
gi|419848731|ref|ZP_14371820.1| endonuclease III [Bifidobacterium longum subsp. longum 1-6B]
gi|419855237|ref|ZP_14377999.1| endonuclease III [Bifidobacterium longum subsp. longum 44B]
gi|23325590|gb|AAN24229.1| endonuclease III [Bifidobacterium longum NCC2705]
gi|189428492|gb|ACD98640.1| Putative EndoIII-related endonuclease [Bifidobacterium longum DJO10A]
gi|227213849|gb|EEI81688.1| DNA-(apurinic or apyrimidinic site) lyase [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239514589|gb|EEQ54456.1| endonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|291517527|emb|CBK71143.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Bifidobacterium longum subsp. longum F8]
gi|296182865|gb|ADG99746.1| endonuclease III [Bifidobacterium longum subsp. longum JDM301]
gi|311772621|gb|ADQ02109.1| Nth [Bifidobacterium longum subsp. longum BBMN68]
gi|320455290|dbj|BAJ65912.1| endonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
gi|320459751|dbj|BAJ70371.1| endonuclease III [Bifidobacterium longum subsp. infantis 157F]
gi|338755237|gb|AEI98226.1| endonuclease III [Bifidobacterium longum subsp. longum KACC 91563]
gi|386406935|gb|EIJ21927.1| endonuclease III [Bifidobacterium longum subsp. longum 1-6B]
gi|386415979|gb|EIJ30498.1| endonuclease III [Bifidobacterium longum subsp. longum 44B]
Length = 228
Score = 47.4 bits (111), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
G + L+ L ++D + VP + + L + G+G K+ V + FPV
Sbjct: 86 GFYRSKTQHLIGLATALDERFGGVVP--RTMDELTSLPGVGRKTANVVLGNAFDIPGFPV 143
Query: 1087 DVNVGRIAVRL----GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
D +V R+ RL W P P + + +P + W L
Sbjct: 144 DTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPPEE------W-----------TNL 186
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+++I FG+ C R+P+C CPL C +A
Sbjct: 187 SHRLILFGRATCHARTPDCANCPLSDTCPSYA 218
>gi|51893925|ref|YP_076616.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51857614|dbj|BAD41772.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 47.4 bits (111), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
EI + I++ G A I+ L+E HG VP E L+ + G+G K+
Sbjct: 73 EIGEMIRDCGLWKSKAKNIQGLSQMLLEKHGG-------EVP--STMEELIQLPGVGRKT 123
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V + A VD +V R+A RLG + P + E +M++I W
Sbjct: 124 ANVVLSNAFGIPAIAVDTHVFRVANRLGLAEAKT-PEE------TERQLMERIPREYWS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ H+ +I G+ C R+P C CPL C+
Sbjct: 176 ----------QAHHWLIYHGRQVCHARNPQCSQCPLLPHCR 206
>gi|86359261|ref|YP_471153.1| endonuclease III protein [Rhizobium etli CFN 42]
gi|86283363|gb|ABC92426.1| endonuclease III protein [Rhizobium etli CFN 42]
Length = 271
Score = 47.4 bits (111), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+K
Sbjct: 150 REELVRLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGE-TPDEVEARLMKV 208
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + LY H+ +I G+ CK R P C C + CK
Sbjct: 209 VP-----------------KHYLYHAHHWLILHGRYTCKARRPECERCVIADICK 246
>gi|387770312|ref|ZP_10126495.1| endonuclease III [Pasteurella bettyae CCUG 2042]
gi|386904674|gb|EIJ69463.1| endonuclease III [Pasteurella bettyae CCUG 2042]
Length = 211
Score = 47.4 bits (111), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%)
Query: 988 GEERSHDKMDSVDW--EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDL 1045
G ++ DK+ SV E + + + IK G N A I + L+E H S
Sbjct: 46 GVNKATDKLFSVANTPEDILALGVDGLKEYIKTIGLYNAKAENIIKTCRTLIEKHHS--- 102
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL 1105
VP ++ E L + G+G K+ V + H VD ++ R++ R G+ P + +
Sbjct: 103 ----QVPENR--EALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKDV 156
Query: 1106 PGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACP 1165
L + V D+ +M ++H+ +I FG+ C R P CG+C
Sbjct: 157 ---LEVEEKLNKVVPDEFKM---------------DVHHWLILFGRYTCIARKPRCGSCL 198
Query: 1166 LRGECKH 1172
+ C++
Sbjct: 199 IEDLCEY 205
>gi|452915860|ref|ZP_21964486.1| endonuclease III [Bacillus subtilis MB73/2]
gi|452116208|gb|EME06604.1| endonuclease III [Bacillus subtilis MB73/2]
Length = 203
Score = 47.4 bits (111), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 56 ELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DELVKLPGVGRKT 106
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+++ P D W
Sbjct: 107 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKED------WS- 159
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 160 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLSLCR 190
>gi|409095774|ref|ZP_11215798.1| endonuclease III [Thermococcus zilligii AN1]
Length = 242
Score = 47.4 bits (111), Expect = 0.062, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P+ + E L+ + G+G K V A PVD +V RI+ RLG P P + +
Sbjct: 118 PEDINE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPGVAPEKVEEY 176
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L P + K +Y +++ M+ G+ C+ P C CPLR C +
Sbjct: 177 LAGLIP----------------EDKWIY-VNHAMVDHGRSICRPIKPKCDECPLRELCPY 219
>gi|424898948|ref|ZP_18322496.1| putative endoIII-related endonuclease [Prevotella bivia DSM 20514]
gi|388593658|gb|EIM33895.1| putative endoIII-related endonuclease [Prevotella bivia DSM 20514]
Length = 216
Score = 47.4 bits (111), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A+ ++ + +K N A + E LVE +G VP D KE L+ + G+
Sbjct: 68 AEVEDVFEYVKSVSYPNSKAKHLVEMSRMLVEAYGG-------EVPSDP-KE-LVKLPGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 1126
G K+ V+ + VD +V R++ RLG VP KE K++ Y
Sbjct: 119 GRKTANVVQAVWFGKPTLAVDTHVYRVSHRLGLVP-------------KEANTPRKVEDY 165
Query: 1127 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L + ++ ++ + H+ ++ G+ CK P C CP C
Sbjct: 166 L---MKHIAKEEVTNAHHWILLHGRYICKSARPLCEKCPFEAFC 206
>gi|149280018|ref|ZP_01886143.1| endonuclease III [Pedobacter sp. BAL39]
gi|149229215|gb|EDM34609.1| endonuclease III [Pedobacter sp. BAL39]
Length = 220
Score = 47.4 bits (111), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV 1100
++ L N P VKE L + G+G K+ + + A VD +V R+A R+G +
Sbjct: 94 ANMLLHDFNNEVPSDVKE-LQKMPGVGRKTANVIASVIYNAPAMAVDTHVYRVARRIG-L 151
Query: 1101 PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPN 1160
P + L+K P Q T++ H+ +I G+ C RSP
Sbjct: 152 STGKTPLAVEKDLVKNLP-----------------QHTIHIAHHWLILHGRYVCVARSPK 194
Query: 1161 CGACPLRGECKHF 1173
C C + CK+F
Sbjct: 195 CNVCEITNICKYF 207
>gi|257075651|ref|ZP_05570012.1| endonuclease III [Ferroplasma acidarmanus fer1]
Length = 217
Score = 47.4 bits (111), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 48/235 (20%)
Query: 955 DMKND--RTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRC------ 1006
D KN + ++ +P+ + + T W L+ I S H D V +A R
Sbjct: 3 DFKNIYMKIREVSPEHHFEFTDSPFWILITTILS------HRTKDIVTDQAARSLYNKYH 56
Query: 1007 -------ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 1059
AD +++ IK G N+ + RI +E+ I+ E+ VP +
Sbjct: 57 DSVGLENADPADVKAIIKYVGFSNVKSLRI-------IEIARIINHEYGGKVP--DTHDE 107
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L+ + G G K+ V A VD +V R++ R+G V + P + L P+
Sbjct: 108 LVKLPGTGSKTANIVLTQGFNIPAIAVDTHVFRVSNRIGLVHTKN-PDETEEALKSIVPL 166
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
++ E + M+ FGK CK SP C CP+ C +FA
Sbjct: 167 EYQV-----------------EFNPVMVEFGKNICKPVSPRCNICPVSDCCDYFA 204
>gi|345006727|ref|YP_004809580.1| endonuclease III [halophilic archaeon DL31]
gi|344322353|gb|AEN07207.1| endonuclease III [halophilic archaeon DL31]
Length = 227
Score = 47.4 bits (111), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 92/237 (38%), Gaps = 67/237 (28%)
Query: 970 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 1029
+D V + + L R Y T E+ ++ ADE ++A+ I N AG +
Sbjct: 49 TDERVNKVTEELYRTYETAEDFAN-------------ADEEQLAEEIYGITFHNSKAGYL 95
Query: 1030 KEFLNRLVELH-GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-----A 1083
K +VE H G + PD ++E L ++ G+G K+ V LQH
Sbjct: 96 KSIGEDIVEKHNGEV---------PDTMEE-LTELSGVGRKTANVV----LQHAHDVVEG 141
Query: 1084 FPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELH 1143
VD +V RI+ RLG + P + LL+ P + W + +L
Sbjct: 142 IVVDTHVQRISRRLGLTE-EERPEAIEQDLLEFVPRRN------WQQFTHL--------- 185
Query: 1144 YQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNG 1200
I G+ C R+P+CG C L C PSEKG + +G
Sbjct: 186 --FIDHGRAVCTARNPDCGDCELADIC----------------PSEKGDSDVDLASG 224
>gi|304393063|ref|ZP_07374992.1| endonuclease III [Ahrensia sp. R2A130]
gi|303294828|gb|EFL89199.1| endonuclease III [Ahrensia sp. R2A130]
Length = 226
Score = 47.4 bits (111), Expect = 0.063, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 982 RRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1041
RR++ + + +KM ++ E VR +AI+ G A + +LV+ G
Sbjct: 47 RRLFPIAD--TPEKMLALGEEGVR--------EAIRTIGLYRNKAKNVIALSQKLVDDFG 96
Query: 1042 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP 1101
S+ VP + +E L+ + G+G K+ V ++ VD ++ RI R+G P
Sbjct: 97 SV-------VP--QTREELVTLPGVGRKTANVVMSMAFGIPTMAVDTHILRIGNRMGIAP 147
Query: 1102 LQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 1161
+ P D+ L+ P + LY H+ +I G+ CK R+P C
Sbjct: 148 GKT-PDDIEAILMARVP-----------------EDYLYHAHHWLILHGRYTCKARTPLC 189
Query: 1162 GACPLRGECK 1171
C + CK
Sbjct: 190 EECIIADLCK 199
>gi|405972859|gb|EKC37606.1| N-glycosylase/DNA lyase [Crassostrea gigas]
Length = 364
Score = 47.4 bits (111), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 1022 QNIIAGRIKEFLNR----LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 1077
+N+ G +++N+ ++E G L LR +P + K+ LL + G+G K +CV L+
Sbjct: 200 RNLGFGYRAKYINKSAQQILEKGGETWLRALREIPYAEAKKELLALNGVGAKVADCVCLM 259
Query: 1078 SLQHI-AFPVDVNVGRIAVRLGWVP 1101
SL A PVD +V +IA R G++P
Sbjct: 260 SLDKTDALPVDTHVWQIAAR-GYMP 283
>gi|398311183|ref|ZP_10514657.1| endonuclease III [Bacillus mojavensis RO-H-1]
Length = 219
Score = 47.4 bits (111), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPKDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+++ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|292671021|ref|ZP_06604447.1| endonuclease III [Selenomonas noxia ATCC 43541]
gi|422343635|ref|ZP_16424562.1| endonuclease III [Selenomonas noxia F0398]
gi|292647338|gb|EFF65310.1| endonuclease III [Selenomonas noxia ATCC 43541]
gi|355378051|gb|EHG25242.1| endonuclease III [Selenomonas noxia F0398]
Length = 210
Score = 47.4 bits (111), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 35/173 (20%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ ++E+ AI + G + A I E + L++ +G VP D E L
Sbjct: 64 EAIASLGQAELEAAIHDCGFFRMKAKHILETCDILLQEYGG-------EVPADF--EALQ 114
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL----GWVPLQPLPGDLHIHLLKEY 1117
+ G+G K+ V ++ + A VD +V R+A RL G PL+ G L K
Sbjct: 115 KLPGVGRKTANVVMSVAFRVPAIAVDTHVFRVANRLHLAVGKTPLEVEKG-----LQKAI 169
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
P D W + H+ +I G+ CK R P CG CPL C
Sbjct: 170 PRAD------WS-----------DAHHWLILHGRQICKARKPLCGDCPLSFIC 205
>gi|375289987|ref|YP_005124527.1| endonuclease III [Corynebacterium diphtheriae 241]
gi|376244820|ref|YP_005135059.1| endonuclease III [Corynebacterium diphtheriae HC01]
gi|376292379|ref|YP_005164053.1| endonuclease III [Corynebacterium diphtheriae HC02]
gi|371579658|gb|AEX43325.1| endonuclease III [Corynebacterium diphtheriae 241]
gi|372107450|gb|AEX73511.1| endonuclease III [Corynebacterium diphtheriae HC01]
gi|372109702|gb|AEX75762.1| endonuclease III [Corynebacterium diphtheriae HC02]
Length = 251
Score = 47.4 bits (111), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA A+E+E+ + I+ G A + +LV ++ +P D E+L+
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVT-------DFSGEIPRDL--EHLV 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR + VD + GR+ RLG + Q P + E+ + D
Sbjct: 126 SLPGVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHEIAD 178
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
I+ W T++ +++I G+ C R+ CGAC L C + A
Sbjct: 179 LIEKKEW---------TMFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGEA 222
>gi|307273846|ref|ZP_07555068.1| endonuclease III [Enterococcus faecalis TX0855]
gi|306509531|gb|EFM78579.1| endonuclease III [Enterococcus faecalis TX0855]
Length = 215
Score = 47.4 bits (111), Expect = 0.064, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI IK G A IK +L+E VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + AF VD +V R++ RL L ++ E +M
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEV------EQTLMR 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ MI FG+ C +P C ACPL C+
Sbjct: 168 KVPKELWVKT-----------HHTMIFFGRYHCLAIAPKCEACPLLYMCQ 206
>gi|451941382|ref|YP_007462019.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451900769|gb|AGF75231.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 246
Score = 47.4 bits (111), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 102/265 (38%), Gaps = 45/265 (16%)
Query: 935 ATTTSKKSPRGKGKSKEYKSDMKNDRTKKTT---PKKNSDNTVQQDWDLLRRIYSTGEER 991
A TSK S K Y D + ++ + P SD + LL + + +
Sbjct: 2 AQRTSKLSKMQKSSEILYSEDEIEEIFRRFSVQRPVPKSDLIYTNVFTLLVAVILSAQA- 60
Query: 992 SHDKMDSVDWEAVRCAD---------ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042
+ ++ E R AD E EIA I+ G A + N L++ +G
Sbjct: 61 TDTSVNKATKELFRLADQPEKMVALGEEEIACHIRTIGLWRAKARNVYALCNFLIDQYGG 120
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
VP + E L+ + G+G K+ V ++ H VD ++ R+ RLG P
Sbjct: 121 -------KVPEKR--EDLMSLPGVGRKTANVVLNVAFGHPTLAVDTHILRLGNRLGLAPG 171
Query: 1103 QPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCG 1162
+ P + LLK P+ + L+ H+ +I G+ C+ R C
Sbjct: 172 KT-PEIVEEKLLKIIPI-----------------RYLHHAHHWLILHGRYICQARKVQCT 213
Query: 1163 ACPLRGECKHFASAVASARFALPGP 1187
C + CK +A+ + A+P P
Sbjct: 214 QCIIADLCK---AAIKTN--AIPAP 233
>gi|408356631|ref|YP_006845162.1| endonuclease III [Amphibacillus xylanus NBRC 15112]
gi|407727402|dbj|BAM47400.1| endonuclease III [Amphibacillus xylanus NBRC 15112]
Length = 218
Score = 47.4 bits (111), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY 1117
E L + G+G K+ V ++ A VD +V R+ RLG + P ++ L+++
Sbjct: 110 EELESLAGVGRKTANVVLSVAFGVPAIAVDTHVERVTKRLGICRWKDTPLEVEKTLMRKV 169
Query: 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
P + W H+++I FG+ CK R+PNC C L C+
Sbjct: 170 PKEE------WS-----------ATHHRLIFFGRYHCKARTPNCDDCELLSLCR 206
>gi|402489484|ref|ZP_10836280.1| endonuclease III [Rhizobium sp. CCGE 510]
gi|401811573|gb|EJT03939.1| endonuclease III [Rhizobium sp. CCGE 510]
Length = 260
Score = 47.4 bits (111), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
K ++ L+ + G+G K+ V ++ VD ++ RIA R+ P + P ++ L+
Sbjct: 137 KTRDELVRLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGK-TPDEVEARLM 195
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K P + LY H+ +I G+ CK R P C C + CK
Sbjct: 196 KVIP-----------------KHYLYHAHHWLILHGRYTCKARRPECERCVIADLCK 235
>gi|376247587|ref|YP_005139531.1| endonuclease III [Corynebacterium diphtheriae HC04]
gi|376250405|ref|YP_005137286.1| endonuclease III [Corynebacterium diphtheriae HC03]
gi|376256223|ref|YP_005144114.1| endonuclease III [Corynebacterium diphtheriae VA01]
gi|372111909|gb|AEX77968.1| endonuclease III [Corynebacterium diphtheriae HC03]
gi|372114155|gb|AEX80213.1| endonuclease III [Corynebacterium diphtheriae HC04]
gi|372118740|gb|AEX82474.1| endonuclease III [Corynebacterium diphtheriae VA01]
Length = 251
Score = 47.4 bits (111), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA A+E+E+ + I+ G A + +LV ++ +P D E+L+
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVT-------DFSGEIPRDL--EHLV 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR + VD + GR+ RLG + Q P + E+ + D
Sbjct: 126 SLPGVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHEIAD 178
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
I+ W T++ +++I G+ C R+ CGAC L C + A
Sbjct: 179 LIEKKEW---------TMFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGEA 222
>gi|302343836|ref|YP_003808365.1| HhH-GPD family protein [Desulfarculus baarsii DSM 2075]
gi|301640449|gb|ADK85771.1| HhH-GPD family protein [Desulfarculus baarsii DSM 2075]
Length = 214
Score = 47.4 bits (111), Expect = 0.065, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
I+ G NI A R+ L R +E H L L P D+++ LL +G+G ++ + +
Sbjct: 77 IRPAGYYNIKAARLGHLL-RTMEAHREGGLSRLLARPTDELRHKLLATKGVGPETADSIL 135
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
L + F VD RI R G DL ++ P D
Sbjct: 136 LYAAGRPIFVVDAYTFRILGRHGLADESMGYFDLQEAVMDATP---------------HD 180
Query: 1136 QKTLYELHYQMITFGKIFCKKRSPNCGACPL 1166
E H ++ GK CKK P C CPL
Sbjct: 181 AAFYNEFHALLVRLGKQRCKKSKPLCQGCPL 211
>gi|94984892|ref|YP_604256.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94555173|gb|ABF45087.1| Endonuclease III, alpha helical glycosidase superfamily [Deinococcus
geothermalis DSM 11300]
Length = 269
Score = 47.4 bits (111), Expect = 0.065, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 1026 AGRIKEFLNRLVEL------------HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVEC 1073
A I L+RL EL G + L LR + ++ + L + G+G+K+
Sbjct: 116 ADSIWNVLHRLAELGLAGELGLAGEGRGGLSLRVLRTMTDEEARALLESLPGVGMKTASL 175
Query: 1074 VRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCY 1133
+ L L A P++ N+ R+A RL P + ++LK D++ W
Sbjct: 176 LLLFDLARPAIPIENNIHRVAGRLDLFPSR-------WNVLKAERWFDEVLPRDW----- 223
Query: 1134 LDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
LD+ T H I G+ C+ + P C C L+ C
Sbjct: 224 LDRAT---FHVSAIRHGRQTCRAQRPRCACCVLQDLC 257
>gi|376241958|ref|YP_005132810.1| endonuclease III [Corynebacterium diphtheriae CDCE 8392]
gi|372105200|gb|AEX71262.1| endonuclease III [Corynebacterium diphtheriae CDCE 8392]
Length = 251
Score = 47.4 bits (111), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 33/178 (18%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV-ELHGSI--DLEWLRNVPPDKVKE 1058
EA A+E+E+ + I+ G A + +LV + G I DLE L ++P
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVTDFSGEIPRDLESLVSLP------ 128
Query: 1059 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118
G+G K+ VR + VD + GR+ RLG + Q P + E+
Sbjct: 129 ------GVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHE 175
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
+ D I+ W TL+ +++I G+ C R+ CGAC L C + A
Sbjct: 176 IADLIEKKEW---------TLFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGQA 222
>gi|386010752|ref|YP_005929029.1| Endonuclease III [Pseudomonas putida BIRD-1]
gi|313497458|gb|ADR58824.1| Endonuclease III [Pseudomonas putida BIRD-1]
Length = 212
Score = 47.4 bits (111), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ +++ IK G N A + E L+E H S VP + +E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIERHDS-------QVP--QTREALE 112
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + + A VD ++ R++ R G P + + ++ L+K P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKTVL-EVEKKLVKFVP--- 168
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+ L + H+ +I G+ C+ R P CG+C + C++
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|296004674|ref|XP_966134.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
gi|225631743|emb|CAG25386.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
Length = 437
Score = 47.4 bits (111), Expect = 0.066, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL-LK 1115
E L + G+G K + + +L +H VD++V RIA RL WV + +L + LK
Sbjct: 324 EELKKLPGIGEKIAQLILQTALNKHEGIAVDIHVHRIANRLNWVNSK---NELDTQMKLK 380
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
Y +Q LW E+++ ++ FG++ CK + P C C L +C+++
Sbjct: 381 SY-----VQKELWS-----------EINHVLVGFGQVICKGKKPLCEKCTLTNKCQYY 422
>gi|257869416|ref|ZP_05649069.1| endonuclease III [Enterococcus gallinarum EG2]
gi|257803580|gb|EEV32402.1| endonuclease III [Enterococcus gallinarum EG2]
Length = 221
Score = 47.4 bits (111), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ A EI + I+ G A IK ++L+E VP + +E L+
Sbjct: 63 EALAAAPVEEIIEKIRTIGLYRNKAKNIKACASQLIERFNG-------QVP--RTREELV 113
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ V + A VD +V R+ RL L D ++ L E +M
Sbjct: 114 SLPGVGRKTANVVLGDAFGIPAIAVDTHVERVTKRLRICRL-----DANV-LEVEQTLMK 167
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
K+ LW + H+ +I FG+ C R+P C CPL C+
Sbjct: 168 KVPEDLW-----------VKTHHTLIFFGRYHCTARAPKCEVCPLLTMCQ 206
>gi|325663087|ref|ZP_08151537.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470541|gb|EGC73771.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 275
Score = 47.4 bits (111), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGR 1092
G +DL+ +R++P K K+ LL + G+G K +C+ L +L H+ AFP+D ++ +
Sbjct: 183 GEVDLDAIRHLPYAKAKKELLKLFGVGEKVADCICLFALHHLQAFPIDTHISQ 235
>gi|281420062|ref|ZP_06251061.1| endonuclease III [Prevotella copri DSM 18205]
gi|281405862|gb|EFB36542.1| endonuclease III [Prevotella copri DSM 18205]
Length = 215
Score = 47.4 bits (111), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 27/165 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A E +I + I N A + E +LVE+ G VP + + L + G+
Sbjct: 68 ASEEDIYELISSVSYPNAKAKHLAEMSRQLVEMFGG-------EVP--EAADDLEKLAGV 118
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVP-LQPLPGDLHIHLLKEYPVMDKIQM 1125
G K+ +R + H VD +V R++ R+G VP P + +L+K P D
Sbjct: 119 GRKTANVIRAVWFGHATMAVDTHVYRVSHRMGLVPKTADTPRKVEDYLMKHIPAEDIPNA 178
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
+ W ++ G+ CK P C C C
Sbjct: 179 HHW-----------------ILLHGRYICKSTKPLCDKCFFNEYC 206
>gi|375362747|ref|YP_005130786.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731269|ref|ZP_16170395.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|371568741|emb|CCF05591.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407075423|gb|EKE48410.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 219
Score = 47.4 bits (111), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|398306834|ref|ZP_10510420.1| endonuclease III [Bacillus vallismortis DV1-F-3]
Length = 219
Score = 47.4 bits (111), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPEDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+++ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKED------WS- 175
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 176 ----------VTHHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|302530869|ref|ZP_07283211.1| endonuclease III [Streptomyces sp. AA4]
gi|302439764|gb|EFL11580.1| endonuclease III [Streptomyces sp. AA4]
Length = 253
Score = 47.4 bits (111), Expect = 0.069, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
AD +E+ + ++ G A + LVE +G VP K + L+ + G+
Sbjct: 85 ADRAELEEYLRTTGFFRAKANSLMGLGAALVERYGG-------EVP--KKLDDLVTLPGV 135
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV-MDKIQM 1125
G K+ V + VD + GR+ R GW +E PV ++
Sbjct: 136 GRKTANVVLGNAFDVPGITVDTHFGRLVRRWGWTA-------------EEDPVKVEHAVG 182
Query: 1126 YLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFA-- 1183
L PR K L +++I G+ C R P CGACPLR +C F + A
Sbjct: 183 ELIPR------KEWTMLSHRVIFHGRRVCHARKPACGACPLRKDCPSFGAGPTEFEVAAK 236
Query: 1184 -LPGPSEKGIV 1193
+ GP + I+
Sbjct: 237 LVKGPEKDHIL 247
>gi|213691195|ref|YP_002321781.1| endonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
gi|213522656|gb|ACJ51403.1| endonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
Length = 228
Score = 47.4 bits (111), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
G + L+ L ++D + VP + + L + G+G K+ V + FPV
Sbjct: 86 GFYRSKTQHLIGLATALDERFGGVVP--RTMDGLTSLPGVGRKTANVVLGNAFDIPGFPV 143
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D +V R+ RL W +P KI+ + C+ ++ L +++
Sbjct: 144 DTHVMRVTGRLRW----------RSDWRSAHPDPVKIEKEI--TACFPPEE-WTNLSHRL 190
Query: 1147 ITFGKIFCKKRSPNCGACPLRGECKHFA 1174
I FG+ C R+P+C CPL C +A
Sbjct: 191 ILFGRATCHARTPDCANCPLSDTCPSYA 218
>gi|6850320|gb|AAF29397.1|AC009999_17 Contains similarity to an endonuclease III homolog from Homo sapiens
gb|U81285, and contains an Endonuclease III PF|00730
domain [Arabidopsis thaliana]
Length = 402
Score = 47.4 bits (111), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA+ ADES I + I G A +K+ + +E+ ++P + E LL
Sbjct: 214 EAIDKADESTIKELIYPVGFYTRKATNVKKVAKICL-------MEYDGDIP--RTLEELL 264
Query: 1062 DIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEY--- 1117
+ G+G K V ++ + VD +V RI RLGWV +P LL Y
Sbjct: 265 SLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNRLGWVS-KPGTKQFAYLLLVTYLYF 323
Query: 1118 --------PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
P ++ + W L + +++ ++ FG+ C P+CG C +
Sbjct: 324 VLDQKTSSPEETRVALQQW-----LPKGEWVAINFLLVGFGQTICTPLRPHCGTCSITEI 378
Query: 1170 C 1170
C
Sbjct: 379 C 379
>gi|218531841|ref|YP_002422657.1| DNA-(apurinic or apyrimidinic site) lyase [Methylobacterium
extorquens CM4]
gi|218524144|gb|ACK84729.1| DNA-(apurinic or apyrimidinic site) lyase [Methylobacterium
extorquens CM4]
Length = 238
Score = 47.4 bits (111), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 31/176 (17%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
+E +R + E+ IK N +KE +++E +G N+P ++ + L
Sbjct: 87 FEELRDLPDDELRRIIKPVAHYNRKTKNLKEMARQIIEDYGG-------NIPDNR--DDL 137
Query: 1061 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL--PGDLHIHLLKEYP 1118
+ ++G+G K V+ + + + VD +V R+ RLG V DL + + P
Sbjct: 138 MKLQGVGRKCVDILMNFTFSQDSIAVDTHVLRVLNRLGVVDTTSAKQAADL---INAQTP 194
Query: 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
K + W +I G C R+P C CPL C +A
Sbjct: 195 ARHKRHAHEW-----------------LIQHGMKICVARTPKCADCPLTKHCDWYA 233
>gi|451346582|ref|YP_007445213.1| endonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449850340|gb|AGF27332.1| endonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 219
Score = 47.4 bits (111), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 1011 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 1070
E+ IK G A I++ ++E +G VP D+ + L+ + G+G K+
Sbjct: 72 ELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVKLPGVGRKT 122
Query: 1071 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR 1130
V ++ A VD +V R++ RLG + ++ L+K+ P D W
Sbjct: 123 ANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMKKVPKED------WSV 176
Query: 1131 LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
H+++I FG+ CK +SP C CPL C+
Sbjct: 177 T-----------HHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|302390061|ref|YP_003825882.1| DNA-(apurinic or apyrimidinic site) lyase [Thermosediminibacter
oceani DSM 16646]
gi|302200689|gb|ADL08259.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Thermosediminibacter oceani DSM 16646]
Length = 229
Score = 47.4 bits (111), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 1007 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 1066
A+ E+ + IKE G + I E +VE +G PD+ +E L+ + G+
Sbjct: 81 AERHELEEDIKECGLFRSKSKNIIETSRIIVEKYGG--------RVPDEFEE-LIKLPGV 131
Query: 1067 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV----PLQPLPGDLHIHLLKEYPVMDK 1122
G K+ + + AF VD +V R+A RLG+ PL + DL + +EY +
Sbjct: 132 GRKTANVILANAFGKPAFAVDTHVFRVARRLGFSDGKDPL-GVEKDLTAKVPREYWI--- 187
Query: 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
+ H+ +I G+ C R P C C L+ C+++
Sbjct: 188 ------------------KAHHWLINHGRRVCTARKPKCENCVLKDSCRYY 220
>gi|194878547|ref|XP_001974085.1| GG21536 [Drosophila erecta]
gi|190657272|gb|EDV54485.1| GG21536 [Drosophila erecta]
Length = 383
Score = 47.4 bits (111), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPL--PGDL 1109
PD VK+ L+ + G+G K ++ I VDV+V R+ RLGWVP +P P
Sbjct: 277 PDNVKD-LIALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLCNRLGWVP-KPTKEPEQT 334
Query: 1110 HIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGE 1169
+ L K P LW E+++ + FG+ C PNCG C +
Sbjct: 335 RVALEKWLP------FSLWS-----------EVNHLFVGFGQTICTPVKPNCGECLNKDI 377
Query: 1170 C 1170
C
Sbjct: 378 C 378
>gi|451947518|ref|YP_007468113.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens DSM
10523]
gi|451906866|gb|AGF78460.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens DSM
10523]
Length = 218
Score = 47.4 bits (111), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 1008 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLG 1067
++ ++A+ I+ G NI A R+K L + + + +L + ++ +E LL ++G+G
Sbjct: 71 EQEQLAEYIRPSGYYNIKARRLKNLLQMISDKYEG-ELTYFLKDSLEESRENLLKVKGVG 129
Query: 1068 LKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYL 1127
++ + + L + + F +D R+ R Q + D L++ MD +
Sbjct: 130 PETADAILLYAAEKPVFVIDTYTHRVFSRH-----QLVEEDTDYFTLQQ-EFMDNL---- 179
Query: 1128 WPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLR 1167
P D E H ++ K FCKK P C CPL+
Sbjct: 180 -PE----DPVLFNEFHALIVAVAKEFCKKAKPRCSDCPLQ 214
>gi|419851082|ref|ZP_14374041.1| endonuclease III [Bifidobacterium longum subsp. longum 35B]
gi|419852670|ref|ZP_14375533.1| endonuclease III [Bifidobacterium longum subsp. longum 2-2B]
gi|386407322|gb|EIJ22301.1| endonuclease III [Bifidobacterium longum subsp. longum 35B]
gi|386410084|gb|EIJ24895.1| endonuclease III [Bifidobacterium longum subsp. longum 2-2B]
Length = 228
Score = 47.4 bits (111), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
G + L+ L ++D + VP + + L + G+G K+ V + FPV
Sbjct: 86 GFYRSKTQHLIGLATALDERFGGVVP--RTMDELTSLPGVGRKTANVVLGNAFDIPGFPV 143
Query: 1087 DVNVGRIAVRL----GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
D +V R+ RL W P P + + +P + W L
Sbjct: 144 DTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPPEE------W-----------TNL 186
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+++I FG+ C R+P+C CPL C +A
Sbjct: 187 SHRLILFGRATCHARTPDCANCPLSDTCPSYA 218
>gi|376286781|ref|YP_005159347.1| endonuclease III [Corynebacterium diphtheriae BH8]
gi|371584115|gb|AEX47780.1| endonuclease III [Corynebacterium diphtheriae BH8]
Length = 251
Score = 47.4 bits (111), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 1002 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 1061
EA A+E+E+ + I+ G A + +LV ++ +P D E+L+
Sbjct: 75 EAYASANEAELQEMIRPTGFYKAKAAHLIGMGQKLVT-------DFSGEIPRDL--EHLV 125
Query: 1062 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1121
+ G+G K+ VR + VD + GR+ RLG + Q P + E+ + D
Sbjct: 126 SLPGVGRKTAHVVRGNAFDIPGLTVDTHFGRLVRRLG-LTTQTNPVKV------EHEIAD 178
Query: 1122 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176
I+ W T++ +++I G+ C R+ CGAC L C + A
Sbjct: 179 LIEKKEW---------TMFS--HRIIFHGRRVCHSRTAACGACFLAPRCPSYGEA 222
>gi|429192463|ref|YP_007178141.1| endoIII-related endonuclease [Natronobacterium gregoryi SP2]
gi|448325876|ref|ZP_21515254.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
gi|429136681|gb|AFZ73692.1| putative endoIII-related endonuclease [Natronobacterium gregoryi SP2]
gi|445613968|gb|ELY67653.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
Length = 270
Score = 47.4 bits (111), Expect = 0.073, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 1046 EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIA-FPVDVNVGRIAVRLGWVPLQP 1104
E++ P+ V+E LL++ G+G K+ +CV L + FPVD +V RI RLG
Sbjct: 138 EFVTEKAPETVRETLLEVRGVGPKTADCVLLFAGGRTGVFPVDTHVHRIYRRLGIASPDA 197
Query: 1105 LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC--- 1161
++ L + P + C H I FG+ +C R P C
Sbjct: 198 DHEEVRTVLEEVVPA----------KKCGFG-------HTATIQFGREYCTARKPACLED 240
Query: 1162 -GACPLRGEC 1170
ACPL C
Sbjct: 241 PDACPLGDRC 250
>gi|436837987|ref|YP_007323203.1| endonuclease III [Fibrella aestuarina BUZ 2]
gi|384069400|emb|CCH02610.1| endonuclease III [Fibrella aestuarina BUZ 2]
Length = 218
Score = 47.4 bits (111), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 1053 PDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH 1112
P V E L + G+G K+ + + A VD +V R++ RLG VP
Sbjct: 106 PATVAE-LQRLPGVGRKTANVIVSVVYNQPAMAVDTHVFRVSHRLGLVPRTATTP----- 159
Query: 1113 LLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
L E +M I L PR H+ +I G+ C RSP C C L+ CK+
Sbjct: 160 LAVEKSLMAHIPTALVPRF-----------HHWLILHGRYVCIARSPKCAECALKPVCKY 208
Query: 1173 F 1173
+
Sbjct: 209 Y 209
>gi|70732175|ref|YP_261931.1| endonuclease III [Pseudomonas protegens Pf-5]
gi|68346474|gb|AAY94080.1| endonuclease III [Pseudomonas protegens Pf-5]
Length = 212
Score = 47.4 bits (111), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 1012 IADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSV 1071
+++ IK G N A + E LVE H S VP + +E L + G+G K+
Sbjct: 72 LSEYIKTIGLYNSKAKNVIETCRLLVERHNS-------EVP--QTREELEALPGVGRKTA 122
Query: 1072 ECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL 1131
V + + + VD ++ R++ R G P K ++K M P+
Sbjct: 123 NVVLNTAFRQLTMAVDTHIFRVSNRTGLAPG------------KNVVEVEKKLMKFVPKE 170
Query: 1132 CYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
LD H+ +I G+ C R P CG+C + C++
Sbjct: 171 FLLDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|415721739|ref|ZP_11468672.1| endonuclease III [Gardnerella vaginalis 00703Bmash]
gi|388060444|gb|EIK83136.1| endonuclease III [Gardnerella vaginalis 00703Bmash]
Length = 214
Score = 47.4 bits (111), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 1060 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
L + G+G K+ V + + FPVD +V R+ RLGWV + +E
Sbjct: 112 LTKLPGVGRKTANVVLGNAFKIPGFPVDTHVMRVTSRLGWVSEASAKAKDAAKIEREVTA 171
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
C+ ++ L +++I G++ C R+P CG CPLR C
Sbjct: 172 ------------CFAPEE-WTNLSHRLILHGRMICIARNPRCGDCPLRFLC 209
>gi|451936569|ref|YP_007460423.1| endonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777492|gb|AGF48467.1| endonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 210
Score = 47.4 bits (111), Expect = 0.075, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 1057 KEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116
+E L + G+G K+ V ++ VD +V R++ R G + L D+ L++
Sbjct: 109 REGLESLPGVGRKTANVVLNVAFNQPTIAVDTHVFRVSNRTGIAKGKKLI-DVENKLIRN 167
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 1173
P + L++ H+ ++ FG+ C KR+P C CP+ C+++
Sbjct: 168 IP-----------------NRYLHKAHHMLVLFGRYICVKRNPKCSHCPINDLCEYY 207
>gi|189462599|ref|ZP_03011384.1| hypothetical protein BACCOP_03289 [Bacteroides coprocola DSM 17136]
gi|189430760|gb|EDU99744.1| endonuclease III [Bacteroides coprocola DSM 17136]
Length = 215
Score = 47.4 bits (111), Expect = 0.075, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQ-PLPGDLHIHLLKE 1116
E L+ + G+G K+ ++ + A VD +V R++ R+G VP P HL+K
Sbjct: 110 EELVKLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPKTCTTPLATEKHLVK- 168
Query: 1117 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
Y+ + + H+ +I G+ C R+P C C L G CK
Sbjct: 169 ----------------YIPENLIPTAHHWLILHGRYVCTARNPKCEECGLNGICK 207
>gi|406861525|gb|EKD14579.1| base excision DNA repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 607
Score = 47.0 bits (110), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPL 1102
+ + ++ + + E L+ G+G+K+ CV L LQ +F VD +V R LGWVP
Sbjct: 312 LTMHYVFQMTDEDAMEELIQYYGVGVKTASCVMLFCLQRNSFAVDTHVHRFCRWLGWVPF 371
Query: 1103 Q 1103
+
Sbjct: 372 R 372
>gi|319941589|ref|ZP_08015915.1| endonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319804959|gb|EFW01801.1| endonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 250
Score = 47.0 bits (110), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 1055 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114
+ ++ L+ + G+G K+ V ++ A VD ++ R+ R G+ P + P ++ LL
Sbjct: 107 RTRDELVSLPGVGRKTANVVMNVAFGEPAIAVDTHIFRVCNRTGFAPGKN-PTEVEEKLL 165
Query: 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
K P + L H+ ++ FG+ CK R+P C CP+ C
Sbjct: 166 KVVP-----------------KDYLLNAHHWLLLFGRYICKARNPECVRCPVAEYC 204
>gi|149185054|ref|ZP_01863371.1| endonuclease III family protein [Erythrobacter sp. SD-21]
gi|148831165|gb|EDL49599.1| endonuclease III family protein [Erythrobacter sp. SD-21]
Length = 239
Score = 47.0 bits (110), Expect = 0.076, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 1001 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 1060
WE V A E+ + + NI A R+K L L+EL G +DL L + +L
Sbjct: 72 WEGVAKAPLEELQAELATQTYPNIAAERLKASLTALIELRGLVDLSHLAEMETLPAMRWL 131
Query: 1061 LDIEGLGLK-SVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119
+ G+G K + + +L A +D + RI R+G VP + D ++ PV
Sbjct: 132 EQLPGIGRKIAAGVMNASTLDRPAIVLDGHHTRILQRMGLVPPKA-STDRAFEVI--MPV 188
Query: 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
M K W E H M G+ C+ +P+C AC CK
Sbjct: 189 MPK----EW------HGADFDEHHLLMKKLGQTTCRPAAPDCAACLALPLCK 230
>gi|317482770|ref|ZP_07941782.1| endonuclease III [Bifidobacterium sp. 12_1_47BFAA]
gi|316915805|gb|EFV37215.1| endonuclease III [Bifidobacterium sp. 12_1_47BFAA]
Length = 217
Score = 47.0 bits (110), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
G + L+ L ++D + VP + + L + G+G K+ V + FPV
Sbjct: 75 GFYRSKTQHLIGLATALDERFGGVVP--RTMDELTSLPGVGRKTANVVLGNAFDIPGFPV 132
Query: 1087 DVNVGRIAVRL----GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYEL 1142
D +V R+ RL W P P + + +P + L
Sbjct: 133 DTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFP-----------------PEEWTNL 175
Query: 1143 HYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1174
+++I FG+ C R+P+C CPL C +A
Sbjct: 176 SHRLILFGRATCHARTPDCANCPLSDTCPSYA 207
>gi|384198302|ref|YP_005584045.1| endonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
gi|320457254|dbj|BAJ67875.1| endonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
Length = 217
Score = 47.0 bits (110), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 1027 GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV 1086
G + L+ L ++D + VP + + L + G+G K+ V + FPV
Sbjct: 75 GFYRSKTQHLIGLATALDERFGGVVP--RTMDGLTSLPGVGRKTANVVLGNAFDIPGFPV 132
Query: 1087 DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQM 1146
D +V R+ RL W +P KI+ + C+ ++ L +++
Sbjct: 133 DTHVMRVTGRLRW----------RSDWRSAHPDPVKIEKEI--TACFPPEE-WTNLSHRL 179
Query: 1147 ITFGKIFCKKRSPNCGACPLRGECKHFA 1174
I FG+ C R+P+C CPL C +A
Sbjct: 180 ILFGRATCHARTPDCANCPLSDTCPSYA 207
>gi|87162717|gb|ABD28512.1| hypothetical protein MtrDRAFT_AC148918g16v2 [Medicago truncatula]
Length = 73
Score = 47.0 bits (110), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Query: 625 VVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKST 659
+VDSVV + + NVSD+LSSSA+MSL ARFPLKS+
Sbjct: 1 MVDSVVE-FFSLNVSDHLSSSAFMSLVARFPLKSS 34
>gi|13472772|ref|NP_104339.1| endonuclease III [Mesorhizobium loti MAFF303099]
gi|14023519|dbj|BAB50125.1| endonuclease III [Mesorhizobium loti MAFF303099]
Length = 238
Score = 47.0 bits (110), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 1009 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 1068
E+++ D I+ G A + L+ HG V PD ++ L+ + G+G
Sbjct: 75 EAKVGDYIRTIGLWRNKAKNVIALSEALIRDHG--------GVVPDG-RDELVKLPGVGR 125
Query: 1069 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 1128
K+ V ++ VD ++ RI RLG P + P + LLK P
Sbjct: 126 KTANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGK-TPEQVEQGLLKIIP---------- 174
Query: 1129 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 1171
+ + H+ +I G+ CK R P+C AC + CK
Sbjct: 175 -------DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 210
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,144,859,605
Number of Sequences: 23463169
Number of extensions: 1056398120
Number of successful extensions: 3103340
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 2538
Number of HSP's that attempted gapping in prelim test: 3096057
Number of HSP's gapped (non-prelim): 6429
length of query: 1515
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1359
effective length of database: 8,698,941,003
effective search space: 11821860823077
effective search space used: 11821860823077
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 84 (37.0 bits)