BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000431
(1515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
VP D+ + L+ + G+G K+ V ++ A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 1171 K 1171
+
Sbjct: 209 R 209
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 1051 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1110
VP D+ + L+ + G+G K+ V + A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 1111 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1170
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 1171 K 1171
+
Sbjct: 209 R 209
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 27/197 (13%)
Query: 980 LLRRIYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 1037
LLRR + ++ +DK + +E + +SEIA IKE G N A ++KE ++
Sbjct: 44 LLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI 103
Query: 1038 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1097
+G VP + ++ +LD+ G+G + V L+ A VD N R+ R
Sbjct: 104 NDYGG-------RVP--RNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINR- 153
Query: 1098 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL-CYLDQKTLYELHYQMITFGKIFCKK 1156
+ Y ++ LW + + + ++ F I C
Sbjct: 154 --------------YFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAP 199
Query: 1157 RSPNCGACPLRGECKHF 1173
R P C C + C ++
Sbjct: 200 RKPKCEKCGMSKLCSYY 216
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING
CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1084
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1085 PVDVNVGRIAVRLGWVP 1101
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
Dna Glycosylase In Complex With 8-Oxoguanosine
Length = 292
Score = 37.7 bits (86), Expect = 0.053, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1084
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1085 PVDVNVGRIAVRLGWVP 1101
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE
Opposite To 8-Oxog
Length = 291
Score = 37.7 bits (86), Expect = 0.055, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1084
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1085 PVDVNVGRIAVRLGWVP 1101
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1026 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1084
A +K+ ++R+ +G ++LE+++++ ++ E L G+G K +C+ L S Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYSAF 238
Query: 1085 PVDVNVGRIAVRLGWVP 1101
PVD V + L P
Sbjct: 239 PVDTWVKKAXXSLYVAP 255
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog
(1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog
(1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1146 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1178
+I G + C R P+C CP++ C+ FA VA
Sbjct: 182 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 214
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 682 STSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQ 741
+ SN V S G++ VTE E DR L R F +R + L E G I V+T + S+
Sbjct: 100 AVSNSGVV-SFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRI-VLTSSNTSK 157
Query: 742 AFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFP 798
F S+ + LF D SF+ FS KK +VN + P
Sbjct: 158 DF------SVPKHSLFSGSKGAVD-----------SFVRIFSKDCGDKKITVNAVAP 197
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To A
Resolution Of 1.85 Angstrom
Length = 211
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 1016 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1075
IK G N A I + L+E H VP D+ L + G+G K+ V
Sbjct: 76 IKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGRKTANVVL 126
Query: 1076 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1135
+ VD ++ R+ R + P + + + LLK P K+ + W
Sbjct: 127 NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVE-QVEEKLLKVVPAEFKVDCHHW------- 178
Query: 1136 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1172
+I G+ C R P CG+C + C++
Sbjct: 179 ----------LILHGRYTCIARKPRCGSCIIEDLCEY 205
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 997 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI--DLEWLRNVPPD 1054
D ++ + + + S++A+ ++ G N A RL++L G+I D + N +
Sbjct: 65 DEINLKKIAYIEFSKLAECVRPSGFYNQKA-------KRLIDLSGNILKDFQSFENFKQE 117
Query: 1055 KVKEYLLDIEGLGLKSVECV 1074
+E+LLD +G+G +S + +
Sbjct: 118 VTREWLLDQKGIGKESADAI 137
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 216 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 275
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 276 QRDYSWHP 283
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without 8-Oxoguanine
Length = 324
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 213 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 272
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 273 QRDYSWHP 280
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine
Glycosylase Distally Crosslinked To Guanine-Containing
Dna
Length = 316
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1036 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1094
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 207 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 266
Query: 1095 VR-LGWVP 1101
R W P
Sbjct: 267 QRDYSWHP 274
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 221 KATPICSQPPKLP-----RKQAAAIEKNEAEVIYEPEASKDM----LLTDNLEK--NVAG 269
K PI S+ P+L KQ +A E + P + LL +LE ++
Sbjct: 35 KLEPIKSRAPQLHLEYRFYKQLSATEGVPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCD 94
Query: 270 RTIEPSVVVDLELQ----GNKSEGSPFKYEDFPLASYLTGVPRKKRKHPLELENFGLMDQ 325
RT V+ + +Q Y D ++L G P KR+H + + +FGL +
Sbjct: 95 RTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKE 154
Query: 326 AIDSQKNLQEP 336
ID + P
Sbjct: 155 YIDPETKKHIP 165
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty (Core
Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a Mutant
Length = 225
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 1058 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1115
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVARVLAR--------------CYAVS 152
Query: 1116 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGEC 1170
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,285,278
Number of Sequences: 62578
Number of extensions: 1708521
Number of successful extensions: 3364
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3341
Number of HSP's gapped (non-prelim): 51
length of query: 1515
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1404
effective length of database: 8,027,179
effective search space: 11270159316
effective search space used: 11270159316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)