Query 000431
Match_columns 1515
No_of_seqs 238 out of 1976
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 15:53:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000431.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_211-214//hhsearch_pdb/000431hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 1.0 1 1 289.2 17.4 182 963-1176 33-214 (226)
2 3n5n_X A/G-specific adenine DN 1.0 1 1 288.5 17.0 182 963-1177 49-235 (287)
3 3fsp_A A/G-specific adenine gl 1.0 1 1 285.8 15.9 193 962-1190 38-234 (369)
4 2abk_A Endonuclease III; DNA-r 1.0 1 1 283.1 15.9 180 963-1175 29-208 (211)
5 1kea_A Possible G-T mismatches 1.0 1 1 279.4 15.8 182 963-1176 35-219 (221)
6 1kg2_A A/G-specific adenine gl 1.0 1 1 274.7 16.6 182 963-1177 30-215 (225)
7 1pu6_A 3-methyladenine DNA gly 1.0 1 1 230.5 12.0 173 963-1152 30-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 1.0 1 1 194.2 12.0 147 962-1156 43-196 (214)
9 3fhg_A Mjogg, N-glycosylase/DN 1.0 1 1 192.2 10.6 154 963-1156 33-189 (207)
10 4b21_A Probable DNA-3-methylad 1.0 1 1 192.0 14.6 150 963-1118 60-212 (232)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=289.18 Aligned_cols=182 Identities=23% Similarity=0.313 Sum_probs=166.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....+++||+|||+|.++.+++.+|.. .||||++|+.++.++|+++|+++||+++||++|+++++.+.+.+++
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g 106 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFE------KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG 106 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999587869999999999999------8789999985999999999997699199999999999999998089
Q ss_pred CCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 89234306992589999870977778899999999249814522049999997608889999958999999942796256
Q 000431 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122 (1515)
Q Consensus 1043 iDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~LeeLlP~~E~ 1122 (1515)
.+|.. +++|++|||||+|||++||+|+|++++||||+|+.|++.|+||++...++++++..++.++|
T Consensus 107 -------~~p~~--~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p---- 173 (226)
T 1orn_A 107 -------EVPRD--RDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP---- 173 (226)
T ss_dssp -------SCCSC--HHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC----
T ss_pred -------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC----
T ss_conf -------81899--99999879964899999999977995400079999999992887789999999999988367----
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 665310000048946399999999999377333778887889981000445521
Q 000431 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176 (1515)
Q Consensus 1123 IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYasa 1176 (1515)
. +.+.++|.+||+||+.+|++++|+|+.|||+..|++|.+.
T Consensus 174 --~-----------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 174 --K-----------EEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp --G-----------GGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred --H-----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf --4-----------1199999999999999858999999999776542667624
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=288.49 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=161.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....|++||+|||++.++..++.+|.+ .++||++|+.++.++|+++|+++||++ ||++|+++++.++++||+
T Consensus 49 pfe~LVs~ILsQQts~~~v~~~~~rL~~------~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g 121 (287)
T 3n5n_X 49 AYAVWVSEVMLQQTQVATVINYYTGWMQ------KWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGG 121 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHCC
T ss_conf 8999999999677859999999999999------878999998499999999999868799-999999999999998089
Q ss_pred CCHHHHHCCCCHHHHHHHHC-CCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHH----HHC
Q ss_conf 89234306992589999870-9777788999999992498145220499999976088899999589999999----427
Q 000431 1043 IDLEWLRNVPPDKVKEYLLD-IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL----KEY 1117 (1515)
Q Consensus 1043 iDLE~Lr~IPddEAReeLLS-LkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~Le----eLl 1117 (1515)
.+|.+ +++|++ |+|||+|||++||+|+|++++|+||+||.||+.||||++...++.+++..+. .++
T Consensus 122 -------~~p~~--~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~l 192 (287)
T 3n5n_X 122 -------HMPRT--AETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLV 192 (287)
T ss_dssp -------CCCSS--HHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHS
T ss_pred -------CCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -------97189--999998767988899999999852799760259999999994788899985999999999999748
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 962566653100000489463999999999993773337788878899810004455210
Q 000431 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177 (1515)
Q Consensus 1118 P~~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYasa~ 1177 (1515)
| ...+.+||.+||+||+.+|++++|+|+.|||+..|.+|++..
T Consensus 193 p-----------------~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~ 235 (287)
T 3n5n_X 193 D-----------------PARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVE 235 (287)
T ss_dssp C-----------------SSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHH
T ss_pred C-----------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9-----------------888999999999981997489999998897765538887165
No 3
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=1.00 E-value=1 Score=285.82 Aligned_cols=193 Identities=21% Similarity=0.233 Sum_probs=167.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76666020020000159999999996230026888999989998099999999999609938999999999999999819
Q 000431 962 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1041 (1515)
Q Consensus 962 k~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~G 1041 (1515)
.+....+++||+|||++.++..++.+|.+ .++||++|+.++.++|+++|+++||++ ||++|+++++.+.++||
T Consensus 38 ~p~~~lv~~il~qqt~~~~~~~~~~~l~~------~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~ 110 (369)
T 3fsp_A 38 DPYKVWVSEVMLQQTRVETVIPYFEQFID------RFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYG 110 (369)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCC
T ss_conf 86999999999650759999999999999------777999997789999999998668499-99999999999999829
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCC----HHHHHHHHHHHC
Q ss_conf 9892343069925899998709777788999999992498145220499999976088899999----589999999427
Q 000431 1042 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPL----PGDLHIHLLKEY 1117 (1515)
Q Consensus 1042 giDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kas----PEeIE~~LeeLl 1117 (1515)
+ .+|.. +++|++|||||+|||++||+|+|++++|+||+||.|++.|+|+++.... +..++..+..++
T Consensus 111 g-------~~p~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3fsp_A 111 G-------KVPDD--PDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIM 181 (369)
T ss_dssp T-------CCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHC
T ss_pred C-------CCHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9-------98368--99985599867799999999977998133338999999997276667554324999999999847
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9625666531000004894639999999999937733377888788998100044552100011357999878
Q 000431 1118 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 1190 (1515)
Q Consensus 1118 P~~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYasa~asaRlaLp~pe~k 1190 (1515)
| +. .+.+||.+||+||+.+|++++|+|+.|||+..|.+|+... ...+|.+..|
T Consensus 182 p------~~-----------~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~---~~~~PvK~~k 234 (369)
T 3fsp_A 182 A------YE-----------NPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV---AEELPVKMKK 234 (369)
T ss_dssp C------SS-----------SHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTC---GGGCSCCCCC
T ss_pred C------HH-----------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC---CCCCCCCCCC
T ss_conf 9------41-----------3999999999998876389999898887844448986698---6658865555
No 4
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=283.14 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=163.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....+++||+|||+|.++.+++.+|. ..||||++|+.++.++|+++|+++||+++||++|+++++.+.+.+++
T Consensus 29 pfe~lv~~Il~qqts~~~v~~~~~~l~------~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g 102 (211)
T 2abk_A 29 PFELLIAVLLSAQATDVSVNKATAKLY------PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG 102 (211)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHT------TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH------HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 899999999967788999999999999------98789999987799999999998699769999999999999998499
Q ss_pred CCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 89234306992589999870977778899999999249814522049999997608889999958999999942796256
Q 000431 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1122 (1515)
Q Consensus 1043 iDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~LeeLlP~~E~ 1122 (1515)
.+|.. +++|++|||||+|||++||+|+|++++||||+|+.|++.|+||.. ..++++++..++.++|
T Consensus 103 -------~~~~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p---- 168 (211)
T 2abk_A 103 -------EVPED--RAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVP---- 168 (211)
T ss_dssp -------SCCSC--HHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSC----
T ss_pred -------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCC----
T ss_conf -------84689--999984899976999999999779973776789999999948888-9999999999998557----
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 66531000004894639999999999937733377888788998100044552
Q 000431 1123 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS 1175 (1515)
Q Consensus 1123 IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYas 1175 (1515)
+..| .+||.+||+||+.+|++++|+|+.|||+..|.|+.+
T Consensus 169 --~~~~-----------~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~ 208 (211)
T 2abk_A 169 --AEFK-----------VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp --GGGT-----------TTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred --HHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCC
T ss_conf --4219-----------999999999999977899999999999232788674
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=1.00 E-value=1 Score=279.37 Aligned_cols=182 Identities=23% Similarity=0.282 Sum_probs=159.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....+++||+|||+|.++.+++.+|.+ .||+|++|+.++.++|+++|+++||+++||++|+++++.+.+.+++
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~------~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g 108 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFV------KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG 108 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999764879999999999999------8789999977899999999987799779999999999999998089
Q ss_pred CCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHC-CCCCCCCC--HHHHHHHHHHHCCC
Q ss_conf 8923430699258999987097777889999999924981452204999999760-88899999--58999999942796
Q 000431 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL-GWVPLQPL--PGDLHIHLLKEYPV 1119 (1515)
Q Consensus 1043 iDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RL-GLVp~kas--PEeIE~~LeeLlP~ 1119 (1515)
.+|.. +++|++|||||+|||++||+|+|++++||||+|+.|++.|+ ||...... ...+....+.+.|
T Consensus 109 -------~~p~~--~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P- 178 (221)
T 1kea_A 109 -------RVPRN--RKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVP- 178 (221)
T ss_dssp -------SCCSC--HHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSC-
T ss_pred -------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC-
T ss_conf -------96599--99998479972999999999866998022449999999997188778982789999999998688-
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 256665310000048946399999999999377333778887889981000445521
Q 000431 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1176 (1515)
Q Consensus 1120 ~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYasa 1176 (1515)
.+.+.+||.+||+||+.+|++++|+|+.|||+..|++|...
T Consensus 179 ----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 179 ----------------GGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCC
T ss_conf ----------------52199999999999899869999999989981316445317
No 6
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=1.00 E-value=1 Score=274.69 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=157.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....+++||+|||+|.++.+++.+|.+ .|+||++|+.++.++|+++|+++||++ ||++|+++++.+.+.+++
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~------~~pt~~~la~~~~~~l~~~i~~~G~~~-kA~~l~~~a~~i~~~~~g 102 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMA------RFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGG 102 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHH------HCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCC
T ss_conf 8999999999776879999999999999------787999998779999999998678099-999999999999998389
Q ss_pred CCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHH----HHHHCC
Q ss_conf 8923430699258999987097777889999999924981452204999999760888999995899999----994279
Q 000431 1043 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH----LLKEYP 1118 (1515)
Q Consensus 1043 iDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~----LeeLlP 1118 (1515)
.+|.. +++|++|||||+|||++||+|+|++++|+||+||.|++.|+|+++...++...+.. .+.++|
T Consensus 103 -------~~p~~--~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p 173 (225)
T 1kg2_A 103 -------KFPET--FEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTP 173 (225)
T ss_dssp -------SCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCC
T ss_pred -------CCHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -------96489--999865899849999999999579981126799999999974887777731039999999998789
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 62566653100000489463999999999993773337788878899810004455210
Q 000431 1119 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1177 (1515)
Q Consensus 1119 ~~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICtarkPnCnaCPLRs~CkyYasa~ 1177 (1515)
.+.+.+||.+||+||+.+|++++|+|+.|||+..|.+|....
T Consensus 174 -----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 215 (225)
T 1kg2_A 174 -----------------AVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNS 215 (225)
T ss_dssp -----------------STTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTC
T ss_pred -----------------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCC
T ss_conf -----------------341999999999998887689999999999834378977599
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=1.00 E-value=1 Score=230.47 Aligned_cols=173 Identities=15% Similarity=0.150 Sum_probs=145.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC------HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 66660200200001599999999962300268889999------899980999999999996099389999999999999
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVD------WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRL 1036 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpT------PEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~I 1036 (1515)
+....+++||+|||+|.++.+++.+|.+ .++++ |++|+.++.++|+++|+++||+++||++|+++++.+
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~-----~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i 104 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKN-----AFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNI 104 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHH-----TTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8999999999388879999999999997-----04999543365999980999999999997799399999999999999
Q ss_pred HHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99819989234306992589999870977778899999999249814522049999997608889999958999999942
Q 000431 1037 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKE 1116 (1515)
Q Consensus 1037 vee~GgiDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~LeeL 1116 (1515)
.+.+++ |+.+ +..+++++|++|||||+|||+|||+|+|++++||||+|+.|++.|+||. ..+|++++..++..
T Consensus 105 ~~~~~~--l~~~---~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~~ 177 (218)
T 1pu6_A 105 LKDFQS--FENF---KQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEKG 177 (218)
T ss_dssp HHHHSS--HHHH---HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHHH
T ss_pred HHHCCC--HHHC---CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC--CCCHHHHHHHHHHH
T ss_conf 985498--6526---4357999997589927999999999977999550179999999984999--99999999999975
Q ss_pred CC----CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79----6256665310000048946399999999999377
Q 000431 1117 YP----VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1152 (1515)
Q Consensus 1117 lP----~~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ 1152 (1515)
+| ....+....|. +.+.+++||.+||+|||.
T Consensus 178 ~p~~lp~~~~~~~~~~~-----~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 178 VQENLNSALALYENTIS-----LAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHTTHHHHHHTTTTCSC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHCCCCCC-----HHHHHHHHHHHHHHHHHH
T ss_conf 34307603210012334-----399999999999998110
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=1.00 E-value=1 Score=194.16 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=124.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CHHHHHHHHHHHHH--HHH
Q ss_conf 76666020020000159999999996230026888999989998099999999999609--93899999999999--999
Q 000431 962 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLN--RLV 1037 (1515)
Q Consensus 962 k~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lG--l~nrKAkrIkeLAk--~Iv 1037 (1515)
.++..++++||+|||+|.++.+++.+|. +.|+.++.++|+++|+++| |+++||++|+++++ .+.
T Consensus 43 ~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~ 110 (214)
T 3fhf_A 43 EWFKELCFCILTANFTAEGGIRIQKEIG------------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIK 110 (214)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHT------------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9699999999827788999999999999------------9998799999999999972477999999999999766899
Q ss_pred HHHCCCCHHHHHCC-CCHHHHHHHH-CCCCCCHHHHHHHHHHHCCCEEEE-CCHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 98199892343069-9258999987-097777889999999924981452-20499999976088899999589999999
Q 000431 1038 ELHGSIDLEWLRNV-PPDKVKEYLL-DIEGLGLKSVECVRLLSLQHIAFP-VDVNVGRIAVRLGWVPLQPLPGDLHIHLL 1114 (1515)
Q Consensus 1038 ee~GgiDLE~Lr~I-PddEAReeLL-SLkGIGpKTADcILLFaLgrpaFP-VDTHV~RIL~RLGLVp~kasPEeIE~~Le 1114 (1515)
+.+ ..+ +..+++++|+ +|||||+|||+|||+++ +.+.|+ ||+|+.|++.||||++.. +
T Consensus 111 ~~~--------~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~--~-------- 171 (214)
T 3fhf_A 111 DIV--------ESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEI--P-------- 171 (214)
T ss_dssp HHH--------HHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSC--C--------
T ss_pred HHH--------CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHCCCCCCC--C--------
T ss_conf 986--------36478579999999808998799999999974-9988320719999999984898888--7--------
Q ss_pred HHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 427962566653100000489463999999999993773337
Q 000431 1115 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156 (1515)
Q Consensus 1115 eLlP~~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICta 1156 (1515)
+.+ +...+.++|..|+.||+.+|.+
T Consensus 172 k~l-----------------t~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 172 KTL-----------------SRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp SSC-----------------CHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCC-----------------CHHHHHHHHHHHHHHHHHHCCC
T ss_conf 769-----------------9999999999999999997979
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=192.24 Aligned_cols=154 Identities=13% Similarity=0.055 Sum_probs=130.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf 6666020020000159999999996230026888999989998099999999999609--93899999999999999981
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLNRLVELH 1040 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lG--l~nrKAkrIkeLAk~Ivee~ 1040 (1515)
+....+++||+|||+|.++.+++.+| ++.|+.++.++|+++|+++| |+++||++|+++++++.+.+
T Consensus 33 ~fe~Lv~~ILsqqts~~~~~~~~~~L------------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~ 100 (207)
T 3fhg_A 33 WFRELTLCLLTANSSFISAYQALNCL------------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRL 100 (207)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH------------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHH------------HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999975888799999999999------------898875999999999988066747999999999999999873
Q ss_pred CCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH-HCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9989234306992589999870977778899999999-249814522049999997608889999958999999942796
Q 000431 1041 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL-SLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 1119 (1515)
Q Consensus 1041 GgiDLE~Lr~IPddEAReeLLSLkGIGpKTADcILLF-aLgrpaFPVDTHV~RIL~RLGLVp~kasPEeIE~~LeeLlP~ 1119 (1515)
++ +++.+...++++++++|++|||||+|||+|||+| ++ .++||||+|+.|++.|+||++.. .+
T Consensus 101 ~~-~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~~-------------~~- 164 (207)
T 3fhg_A 101 KE-EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGET-------------NV- 164 (207)
T ss_dssp HH-HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCCC-------------CC-
T ss_pred HH-HHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCEECHHHHHHHHHCCCCCCC-------------CC-
T ss_conf 20-2998747999999999973898689999999998079-88030269999999985998754-------------55-
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2566653100000489463999999999993773337
Q 000431 1120 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1156 (1515)
Q Consensus 1120 ~E~IqK~LW~RLc~lD~etl~ELH~lLIeFGK~ICta 1156 (1515)
+ .++...+.++|..|+.||+.+|.+
T Consensus 165 -----k-------~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 165 -----K-------QLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp -----S-------CCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred -----C-------CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -----6-------699999999999999999996979
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=1.00 E-value=1 Score=192.00 Aligned_cols=150 Identities=12% Similarity=0.090 Sum_probs=129.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66660200200001599999999962300268889999899980999999999996099389999999999999998199
Q 000431 963 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1042 (1515)
Q Consensus 963 ~k~~~VgAILsQQTsWesVrkaiqrLrERg~~~adfpTPEaLAkAs~EELEeLIR~lGl~nrKAkrIkeLAk~Ivee~Gg 1042 (1515)
+....+++|++||++|.++.+++.+|.++......||+|++|+.++.++| +.+||+++||++|+++++.+.+ |.
T Consensus 60 pfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~L----r~~Gl~~~Ka~~l~~~A~~~~~--g~ 133 (232)
T 4b21_A 60 PYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETL----HECGFSKLKSQEIHIVAEAALN--KQ 133 (232)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHH----HTTTCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHHHHHHH--CC
T ss_conf 99999999996847699999999999998498878999999986999999----8869969999999999999996--79
Q ss_pred C-CHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCE-EEEC-CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8-923430699258999987097777889999999924981-4522-04999999760888999995899999994279
Q 000431 1043 I-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1118 (1515)
Q Consensus 1043 i-DLE~Lr~IPddEAReeLLSLkGIGpKTADcILLFaLgrp-aFPV-DTHV~RIL~RLGLVp~kasPEeIE~~LeeLlP 1118 (1515)
+ +|+.|..+++++++++|++|||||+|||+|||+|+|+++ +||| |+||.|++.|+...+..+++.+++...+.+-|
T Consensus 134 ~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P 212 (232)
T 4b21_A 134 IPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKP 212 (232)
T ss_dssp SCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTT
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 9889998728989999999838994889999999984899981117138999999997078778999999999988147
Done!