BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000432
(1513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+ V N F+W S PTL+GI + G VA+ G VG GKSSLLS +L E+ K+ G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 692 KISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
I G+ AYVPQ WI ++RENILFG Q + Y ++ACAL+ D E+ SGD TEIG
Sbjct: 63 AIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL--MGILKDKSV 809
E+G+N+SGGQKQR+ +ARAVY +ADIYL DDP SAVDAH G +F++ + G+LK+K+
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 810 LYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGF 849
+ VTH + +LP D+I+VM G+I++ G ++ELL ++ F
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSI 1320
+I+ N +A P L I+ + P L+ A+ ++ G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
I + + +PQ + + ++R N+ Q + + C L
Sbjct: 63 AI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQK 1439
+ + + E G N S GQ+Q L R + + I + D+ ++VD+ + +
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1440 IISQE--FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497
+I + K++T + + H + + D+++V+S G+I+E S +LL R D F++ ++
Sbjct: 170 VIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228
Query: 1498 YS 1499
Y+
Sbjct: 229 YA 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 216/950 (22%), Positives = 399/950 (42%), Gaps = 123/950 (12%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
++ V N F++ P L G+ L+V G VA+ G+ G GKS+++S +L + G
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALV- 736
+ I G A V Q P + I ENI G + + V AC +
Sbjct: 475 ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMAN 532
Query: 737 --KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
K + +G T +G+RG +SGGQKQRI IARA+ ++ I LLD+ SA+DA +
Sbjct: 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EG 591
Query: 795 LFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVG 854
+ + L K ++ + + H++ + AD+I+ +NG++ + G L+ Q + LV
Sbjct: 592 IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVT 651
Query: 855 AHS------QALESVLTVETS-SRTSQDPTPESELNSDSTSNVKLVHSQ----------- 896
A + A E + E S +R + + S S+ + V S
Sbjct: 652 AQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVI 711
Query: 897 HDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWS----------YLTAVKGGALVPII 946
+ E + + + + ++E +K ++ + +Y + TA GG + P
Sbjct: 712 DEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTY 771
Query: 947 LLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006
+ +SF N + + S G + L++ +L +C L +
Sbjct: 772 SVFFTSFM------NVFAGNPADFLSQG------HFWALMFLVLAAAQGICSFLMTFFMG 819
Query: 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDS--TPTGRILNRASNDQSVLDLELAGRLGWCAF 1064
I + L + +V + FFDS +G+I R + D L + R
Sbjct: 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVIT 879
Query: 1065 SIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYY---------IPTARELARLAEIQ 1115
+++ ++ IG+ WQ+ ++ I + I + + QY + +A E A +I
Sbjct: 880 TLVSMVAGIGLAFFYGWQMALLIIAILPI-VAFGQYLRGRRFTGKNVKSASEFADSGKIA 938
Query: 1116 RAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHN--VSAMEWLCFR--L 1171
E++ T+ A +ED F +D + + + + C L
Sbjct: 939 --------IEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVL 990
Query: 1172 NLLSNFVFAFSLVVLVTLPEGI-------------INPSIAGLAVTY--GINLNVLQASI 1216
LL+ + L +++T P + I+ S G A +Y I
Sbjct: 991 YLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGI 1050
Query: 1217 IWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLP 1276
I+ + +K+ S+ + L G + F N++ Y E
Sbjct: 1051 IFGMLRKISKIDSLSLAGEKKKL-------------------YGKVIFKNVRFAYPERPE 1091
Query: 1277 -SVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335
+LK +S + ++ + R + G I ID +I +
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 1336 RSRLGIIPQDPTLFDGTVRGN----LDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
RS++ I+ Q+PTLFD ++ N LDP + QV EA + + + E ++
Sbjct: 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETR 1210
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVV 1451
V + G S GQ+Q + R L++ IL+LDEAT+++D+ ++ V+Q+ + + + RT +
Sbjct: 1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCI 1270
Query: 1452 TIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501
IAHR++TV+++D + V+S+G I E + T+L+ + +++ K+ + +
Sbjct: 1271 VIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 218/920 (23%), Positives = 399/920 (43%), Gaps = 97/920 (10%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N FS+ L G+ LKVK G VA+ G G GKS+ + + + G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
I G V Q P + I ENI +G + + A D
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 739 FELFASGDL-TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
F + T +GERG +SGGQKQRI IARA+ ++ I LLD+ SA+D + + +
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQ 566
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHS 857
L + ++ + + H++ + AD+I + G I + G +EL+++ + LV +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 858 QALESVLTVET-SSRTSQDPTPESELNSDST-----SNVKLVHSQHDSEHELSLEITEKG 911
E L E S+ D S +S S+ S K + HD + +LS
Sbjct: 627 AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST------ 680
Query: 912 GKLVQEEEREKGSIGK-----EVYWSYLT-----AVKGGALVPIILLAQSSFQVLQVASN 961
K +E+ S + W Y A+ G L P + S +V+ V +N
Sbjct: 681 -KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFS--KVVGVFTN 737
Query: 962 YWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNML 1021
PP + + + N+ L++ +L + S + L+ G ++L +
Sbjct: 738 -----GGPPETQRQNS---NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Query: 1022 HSVHRAPMAFFD--STPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQV 1079
S+ R +++FD TG + R +ND + + RL F I LGT ++S +
Sbjct: 790 KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA-VIFQNIANLGTGIIISLI 848
Query: 1080 -AWQVFVIF---IPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHA 1135
WQ+ ++ +P+ I + + + + L E++ + + E++ T+ +
Sbjct: 849 YGWQLTLLLLAIVPIIAIAGVVEMKML-SGQALKDKKELEGSGKIA--TEAIENFRTVVS 905
Query: 1136 FDQEDRFTNANLSLIDNHSRPW----------FHNVSAMEWL----CFRLN--LLSNFVF 1179
+E +F + R F AM + CFR L++ +
Sbjct: 906 LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLM 965
Query: 1180 AFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNL 1239
F V+LV A+ +G +S + A + RI++ +
Sbjct: 966 TFENVLLVFS------------AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT-- 1011
Query: 1240 PSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPS--VLKNISCTFPXXXXXXXXXX 1297
P T+ +P N + G + F + Y PS VL+ +S
Sbjct: 1012 PEIDSYSTQGLKP--NMLE-GNVQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 1298 XXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL 1357
++Q + R +P GS+ +D +I ++ + LR++LGI+ Q+P LFD ++ N+
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 1358 ---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414
D S +++ A + + + + +K ++ V + G S GQ+Q + R L+
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
++ IL+LDEAT+++D+ ++ V+Q+ + + + RT + IAHR+ T+ ++DL++V+ +G++
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247
Query: 1475 AEYDSPTKLLEREDSFFSQL 1494
E+ + +LL ++ +FS +
Sbjct: 1248 KEHGTHQQLLAQKGIYFSMV 1267
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 192/407 (47%), Gaps = 42/407 (10%)
Query: 473 IPITRIQKRFQSKIMDA---KDNRM-----RATSEVLKNMKTL----KLQAWDTRFLQKL 520
+PI I + K++ KD + + +E ++N +T+ + Q ++T + Q L
Sbjct: 861 VPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSL 920
Query: 521 E-----SLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSA 575
+ ++++ + S T A +++ ++ + FGA ++ +T VL
Sbjct: 921 QIPYRNAMKKAHVF----GITFSFTQAMMYF---SYAACFRFGAYLVTQQLMTFENVLLV 973
Query: 576 LATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQED-EIQRDAVEYVPKGRSEFEVEV 634
+ + + + A+ VSA I +++ EI + + + E V+
Sbjct: 974 FSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF 1033
Query: 635 VNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694
F++ S P L G+ L+VK+G +A+ G+ G GKS+++ + MAG+V +
Sbjct: 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 695 GTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF 739
G + V Q P + +I ENI +G+ Y+ V A A + F
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 740 -ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+ T +G++G +SGGQKQRI IARA+ + I LLD+ SA+D + ++ ++
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 799 CLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
L + ++ + + H++ + AD+I+V++NG++ + G ++LL Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 121/531 (22%), Positives = 223/531 (41%), Gaps = 44/531 (8%)
Query: 987 YTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASN 1046
YT + G + ++ + R K+ H++ + +FD G + R ++
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 1047 DQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI---PVTGIC--IWYQQYY 1101
D S ++ + ++G ++ G + W++ ++ + PV G+ IW +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1102 IPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQE----DRFTNANLSLIDNHS--R 1155
T +EL A+ E LA T+ AF + +R+ N NL +
Sbjct: 234 SFTDKELHAYAKAGAVA-----EEVLAAIRTVIAFGGQKKELERYNN-NLEEAKRLGIKK 287
Query: 1156 PWFHNVS-AMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGI---NLNV 1211
N+S +L + F + SLV+ G + L V + + +V
Sbjct: 288 AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV------LTVFFSVLIGAFSV 341
Query: 1212 LQASI-IWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
QAS I NA V +I+ N PS ++ P N G + F N+
Sbjct: 342 GQASPNIEAFANARGAAYEVFKII--DNKPSIDSF-SKSGHKPDNIQ--GNLEFKNIHFS 396
Query: 1271 YAEHLP-SVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
Y +LK ++ +Q + R+ +P G + ID DI
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDK-----QVWEALDKCQLGDLVRAK 1384
I + LR +G++ Q+P LF T+ N ++Y + ++ +A+ + D +
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAEN----IRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+ D+ V E G S GQ+Q + R L++ IL+LDEAT+++D+ ++ V+Q + +
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ RT + IAHR+ TV ++D++ G I E + +L+ RE + +L+
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLV 622
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 217/927 (23%), Positives = 401/927 (43%), Gaps = 111/927 (11%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N FS+ L G+ LKVK G VA+ G G GKS+ + + + G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
I G V Q P + I ENI +G + + A D
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 739 FELFASGDL-TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
F + T +GERG +SGGQKQRI IARA+ ++ I LLD+ SA+D + + +
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQ 566
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHS 857
L + ++ + + H++ + AD+I + G I + G +EL+++ + LV +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 858 QALESVLTVET-SSRTSQDPTPESELNSDST-----SNVKLVHSQHDSEHELSLEITEKG 911
E L E S+ D S +S S+ S K + HD + +LS
Sbjct: 627 AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST------ 680
Query: 912 GKLVQEEEREKGSIGK-----EVYWSYLT-----AVKGGALVPIILLAQSSFQVLQVASN 961
K +E+ S + W Y A+ G L P + S +V+ V +N
Sbjct: 681 -KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFS--KVVGVFTN 737
Query: 962 YWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNML 1021
PP + + + N+ L++ +L + S + L+ G ++L +
Sbjct: 738 -----GGPPETQRQNS---NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Query: 1022 HSVHRAPMAFFD--STPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQV 1079
S+ R +++FD TG + R +ND + + RL F I LGT ++S +
Sbjct: 790 KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA-VIFQNIANLGTGIIISLI 848
Query: 1080 -AWQVFVIF---IPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHA 1135
WQ+ ++ +P+ I + + + + L E++ + + E++ T+ +
Sbjct: 849 YGWQLTLLLLAIVPIIAIAGVVEMKML-SGQALKDKKELEGSGKIA--TEAIENFRTVVS 905
Query: 1136 FDQEDRFT------------NA-------NLSLIDNHSRPWFHNVSAMEWLCF----RLN 1172
+E +F NA ++ + +F +A + + +L
Sbjct: 906 LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLM 965
Query: 1173 LLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVER 1232
N + FS +V + G ++ A Y V + II R
Sbjct: 966 TFENVLLVFSAIVFGAMAVG----QVSSFAPDYA-KATVSASHII--------------R 1006
Query: 1233 ILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPS--VLKNISCTFPXXX 1290
I++ + P T+ +P N + G + F + Y PS VL+ +S
Sbjct: 1007 IIEKT--PEIDSYSTQGLKP--NMLE-GNVQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQ 1060
Query: 1291 XXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD 1350
++Q + R +P GS+ +D +I ++ + LR++LGI+ Q+P LFD
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 1351 GTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407
++ N+ D S +++ A + + + + +K ++ V + G S GQ+Q
Sbjct: 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180
Query: 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVL 1467
+ R L+++ IL+LDEAT+++D+ ++ V+Q+ + + + RT + IAHR+ T+ ++DL++
Sbjct: 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240
Query: 1468 VLSDGRIAEYDSPTKLLEREDSFFSQL 1494
V+ +G++ E+ + +LL ++ +FS +
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 192/407 (47%), Gaps = 42/407 (10%)
Query: 473 IPITRIQKRFQSKIMDA---KDNRM-----RATSEVLKNMKTL----KLQAWDTRFLQKL 520
+PI I + K++ KD + + +E ++N +T+ + Q ++T + Q L
Sbjct: 861 VPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSL 920
Query: 521 E-----SLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSA 575
+ ++++ + S T A +++ ++ + FGA ++ +T VL
Sbjct: 921 QIPYRNAMKKAHVF----GITFSFTQAMMYF---SYAAAFRFGAYLVTQQLMTFENVLLV 973
Query: 576 LATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQED-EIQRDAVEYVPKGRSEFEVEV 634
+ + + + A+ VSA I +++ EI + + + E V+
Sbjct: 974 FSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF 1033
Query: 635 VNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694
F++ S P L G+ L+VK+G +A+ G+ G GKS+++ + MAG+V +
Sbjct: 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 695 GTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF 739
G + V Q P + +I ENI +G+ Y+ V A A + F
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 740 -ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+ T +G++G +SGGQKQRI IARA+ + I LLD+ SA+D + ++ ++
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 799 CLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
L + ++ + + H++ + AD+I+V++NG++ + G ++LL Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 121/531 (22%), Positives = 223/531 (41%), Gaps = 44/531 (8%)
Query: 987 YTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASN 1046
YT + G + ++ + R K+ H++ + +FD G + R ++
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 1047 DQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI---PVTGIC--IWYQQYY 1101
D S ++ + ++G ++ G + W++ ++ + PV G+ IW +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1102 IPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQE----DRFTNANLSLIDNHS--R 1155
T +EL A+ E LA T+ AF + +R+ N NL +
Sbjct: 234 SFTDKELHAYAKAGAVA-----EEVLAAIRTVIAFGGQKKELERYNN-NLEEAKRLGIKK 287
Query: 1156 PWFHNVS-AMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGI---NLNV 1211
N+S +L + F + SLV+ G + L V + + +V
Sbjct: 288 AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV------LTVFFSVLIGAFSV 341
Query: 1212 LQASI-IWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
QAS I NA V +I+ N PS ++ P N G + F N+
Sbjct: 342 GQASPNIEAFANARGAAYEVFKII--DNKPSIDSF-SKSGHKPDNIQ--GNLEFKNIHFS 396
Query: 1271 YAEHLP-SVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
Y +LK ++ +Q + R+ +P G + ID DI
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDK-----QVWEALDKCQLGDLVRAK 1384
I + LR +G++ Q+P LF T+ N ++Y + ++ +A+ + D +
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAEN----IRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+ D+ V E G S GQ+Q + R L++ IL+LDEAT+++D+ ++ V+Q + +
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ RT + IAHR+ TV ++D++ G I E + +L+ RE + +L+
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLV 622
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 125/196 (63%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I L +++G +AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+FG YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 827 VMENGRIAQAGRFEEL 842
++ G G F EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + E+ ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T + V + + + ++T + + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L G Y + ++L F S+L+
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 125/196 (63%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I L +++G +AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+FG YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 827 VMENGRIAQAGRFEEL 842
++ G G F EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + E+ ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T + V + + + ++T + + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L G Y + ++L F S+L+
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 128/204 (62%), Gaps = 2/204 (0%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703
E +P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q
Sbjct: 30 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQF 89
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763
WI+ G I+ENI+FG YD +Y ++AC L +D FA D +GE GI +SGGQ+
Sbjct: 90 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 149
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAAD 823
RI +ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD
Sbjct: 150 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 209
Query: 824 IILVMENGRIAQAGRFEELLKQNI 847
IL++ G G F EL QN+
Sbjct: 210 KILILHEGSSYFYGTFSEL--QNL 231
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 14/235 (5%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
+ N+ + E VLK+I+ L+ I +EP+ G I
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI- 77
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
R+ Q + GT++ N+ V Y + + + CQL + +
Sbjct: 78 ------------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI 125
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKI 1440
EK + + E G S GQR L R + K + + +LD +D T+ + +
Sbjct: 126 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 185
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + ++T + + ++ + +D +L+L +G Y + ++L + F S+L+
Sbjct: 186 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 240
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 128/204 (62%), Gaps = 2/204 (0%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703
E +P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQF 77
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763
WI+ G I+ENI+FG YD +Y ++AC L +D FA D +GE GI +SGGQ+
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 137
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAAD 823
RI +ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD
Sbjct: 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 197
Query: 824 IILVMENGRIAQAGRFEELLKQNI 847
IL++ G G F EL QN+
Sbjct: 198 KILILHEGSSYFYGTFSEL--QNL 219
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 14/235 (5%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
+ N+ + E VLK+I+ L+ I +EP+ G I
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI- 65
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
R+ Q + GT++ N+ V Y + + + CQL + +
Sbjct: 66 ------------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI 113
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKI 1440
EK + + E G S GQR L R + K + + +LD +D T+ + +
Sbjct: 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + ++T + + ++ + +D +L+L +G Y + ++L + F S+L+
Sbjct: 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 228
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 124/196 (63%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I L +++G +AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI
Sbjct: 111 MPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 827 VMENGRIAQAGRFEEL 842
++ G G F EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + E+ ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T + V + + + ++T + + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L G Y + ++L F S+L+
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 124/196 (63%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I L +++G +AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI
Sbjct: 111 MPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 827 VMENGRIAQAGRFEEL 842
++ G G F EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + E+ ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T + V + + + ++T + + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L G Y + ++L F S+L+
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I L +++G +AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI
Sbjct: 111 MPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 169
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 229
Query: 827 VMENGRIAQAGRFEEL 842
++ G G F EL
Sbjct: 230 ILHQGSSYFYGTFSEL 245
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + E+ ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 158
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T + V + + + ++T + + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 218
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L G Y + ++L F S+L+
Sbjct: 219 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 257
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 2/201 (0%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y ++AC L +D FA D +GE GI +SGGQ+ RI
Sbjct: 111 MPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 827 VMENGRIAQAGRFEELLKQNI 847
++ G G F EL QN+
Sbjct: 231 ILHEGSSYFYGTFSEL--QNL 249
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 20/246 (8%)
Query: 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIF 1310
R SN D ++SF N + VLK+I+ L+ I
Sbjct: 32 RKTSNGDD--SLSFSNFSLLGT----PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
+EP+ G I R+ Q + GT++ N+ V Y + +
Sbjct: 86 GELEPSEGKI-------------KHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRS 132
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+ CQL + + EK + + E G S GQR L R + K + + +LD +D
Sbjct: 133 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 1431 SATDG-VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDS 1489
T+ + + + + ++T + + ++ + +D +L+L +G Y + ++L +
Sbjct: 193 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Query: 1490 FFSQLI 1495
F S+L+
Sbjct: 253 FSSKLM 258
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 127/204 (62%), Gaps = 3/204 (1%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703
E +P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQF 77
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763
WI+ G I+ENI+ G YD +Y ++AC L +D FA D +GE GI +SGGQ+
Sbjct: 78 SWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 136
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAAD 823
RI +ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD
Sbjct: 137 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 196
Query: 824 IILVMENGRIAQAGRFEELLKQNI 847
IL++ G G F EL QN+
Sbjct: 197 KILILHEGSSYFYGTFSEL--QNL 218
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 15/235 (6%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
+ N+ + E VLK+I+ L+ I +EP+ G I
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI- 65
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
R+ Q + GT++ N+ V Y + + + CQL + +
Sbjct: 66 ------------KHSGRISFCSQFSWIMPGTIKENIIG-VSYDEYRYRSVIKACQLEEDI 112
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKI 1440
EK + + E G S GQR L R + K + + +LD +D T+ + +
Sbjct: 113 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 172
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + ++T + + ++ + +D +L+L +G Y + ++L + F S+L+
Sbjct: 173 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 227
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 127/201 (63%), Gaps = 3/201 (1%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q+ WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y ++AC L +D FA D +GE GI +SGGQ+ RI
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 827 VMENGRIAQAGRFEELLKQNI 847
++ G G F EL QN+
Sbjct: 230 ILHEGSSYFYGTFSEL--QNL 248
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q+ + GT++ N+ V Y + + + CQL + + EK + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQEFKDRTVVTIAHR 1456
S GQR L R + K + + +LD +D T+ + + + + ++T + + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L +G Y + ++L F S+L+
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLM 257
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 127/201 (63%), Gaps = 3/201 (1%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q+ WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y ++AC L +D FA D +GE GI +SGGQ+ RI
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 827 VMENGRIAQAGRFEELLKQNI 847
++ G G F EL QN+
Sbjct: 230 ILHEGSSYFYGTFSEL--QNL 248
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 21/246 (8%)
Query: 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIF 1310
R SN D ++SF N + VLK+I+ L+ I
Sbjct: 32 RKTSNGDD--SLSFSNFSLLGT----PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
+EP+ G I R+ Q+ + GT++ N+ V Y + +
Sbjct: 86 GELEPSEGKI-------------KHSGRISFCSQNSWIMPGTIKENIIG-VSYDEYRYRS 131
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+ CQL + + EK + + E G S GQR L R + K + + +LD +D
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 1431 SATDG-VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDS 1489
T+ + + + + ++T + + ++ + +D +L+L +G Y + ++L
Sbjct: 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Query: 1490 FFSQLI 1495
F S+L+
Sbjct: 252 FSSKLM 257
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 2/201 (0%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+FG YD +Y ++AC L +D FA D +GE GI +S GQ+ +I
Sbjct: 111 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 170
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 827 VMENGRIAQAGRFEELLKQNI 847
++ G G F EL QN+
Sbjct: 231 ILHEGSSYFYGTFSEL--QNL 249
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + + EK + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQEFKDRTVVTIAHR 1456
S GQ+ L R + K + + +LD +D T+ + + + + ++T + + +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L +G Y + ++L + F S+L+
Sbjct: 220 MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 258
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 3/201 (1%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
+P L I K++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
+ G I+ENI+ G YD +Y ++AC L +D FA D +GE GI +S GQ+ +I
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 169
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
+ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 827 VMENGRIAQAGRFEELLKQNI 847
++ G G F EL QN+
Sbjct: 230 ILHEGSSYFYGTFSEL--QNL 248
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
R+ Q + GT++ N+ V Y + + + CQL + + EK + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQEFKDRTVVTIAHR 1456
S GQ+ L R + K + + +LD +D T+ + + + + ++T + + +
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + +D +L+L +G Y + ++L + F S+L+
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 257
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 134/514 (26%), Positives = 233/514 (45%), Gaps = 59/514 (11%)
Query: 1015 KLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIG 1074
+L + + R P+ FFD TP G I++R ND ++ L + I+ + G +
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVI 170
Query: 1075 VMSQVAWQVFVIFIPVTGICIWYQQ--------YYIPTARELARLAEIQRAPILHHFAES 1126
+M +V + ++ + + + + Q Y+ R L +L I E
Sbjct: 171 MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGI--------IEED 222
Query: 1127 LAGAATIHAFDQEDR----FTNANLSLIDNHSRPW-FHNVSAMEWLCFRLNLLSNFVFAF 1181
++G I F +E++ F N SL ++ F V L +N+++N FA
Sbjct: 223 ISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGV-----LPPLMNMVNNLGFAL 277
Query: 1182 --------SLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERI 1233
+L ++T+ G I + G + + LN L +N+ + + S ERI
Sbjct: 278 ISGFGGWLALKDIITV--GTI-ATFIGYSRQFTRPLNELSNQ--FNMI--QMALASAERI 330
Query: 1234 LQYSNLPSEA--PLVTE--ECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXX 1289
+ +L E P E E R G I F N+ Y + P VLK+I+
Sbjct: 331 FEILDLEEEKDDPDAVELREVR--------GEIEFKNVWFSYDKKKP-VLKDITFHIKPG 381
Query: 1290 XXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349
++ + R + G I++D +DI KI LRS +GI+ QD LF
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 1350 DGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406
TV+ NL +P +D+++ EA ++ E ++ + +NGE+ S GQRQL
Sbjct: 442 STTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLV 1466
+ R L IL+LDEAT++VD+ T+ IQ + + + +T + IAHR++T+ ++DL+
Sbjct: 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLI 559
Query: 1467 LVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSM 1500
+VL DG I E +L+++ ++ +Y +
Sbjct: 560 IVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGL 593
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/489 (22%), Positives = 212/489 (43%), Gaps = 54/489 (11%)
Query: 407 RQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLA---IYILRTNXXXXXXXXXX 463
R H G+II+ + DV I++ + S F + ++LA I + R N
Sbjct: 130 RTPH--GDIISRVINDVDNINNVLGNSIIQFFSGI-VTLAGAVIMMFRVNVILSLVTLSI 186
Query: 464 XXXXVMTCNIPITRIQKRF--QSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLE 521
V+ I ++ +K F +++ + E + + +KL + + ++K +
Sbjct: 187 VPLTVLITQIVSSQTRKYFYENQRVLGQLNG---IIEEDISGLTVIKLFTREEKEMEKFD 243
Query: 522 SLRQVECIWLWKSLRLSATSAFIFWGS-PTFISVVT---------FGACMLLGIQLTAGR 571
+ + SLR T A IF G P +++V FG + L +T G
Sbjct: 244 RVNE--------SLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGT 295
Query: 572 VLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFE 631
+ + + R P+ L + + I SA+RI L +E ++D + V E
Sbjct: 296 IATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE-EKDDPDAVELREVRGE 354
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N FS+ + P L I +K G KVA+ G GSGK+++++ ++ G +
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
+ G V Q + + ++EN+ +GN D ++ A +
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGATDEEIKEAAKLTH 469
Query: 739 FELF----ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
+ F G T + + G ++S GQ+Q + I RA + I +LD+ S VD T
Sbjct: 470 SDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKS 529
Query: 795 LFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL-KQNIGFEVLV 853
+ + + +++ K+ + + H++ + AD+I+V+ +G I + G+ +EL+ K+ +E+
Sbjct: 530 I-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFT 588
Query: 854 GAHSQALES 862
+ +E
Sbjct: 589 SQYGLVVEK 597
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 132/545 (24%), Positives = 237/545 (43%), Gaps = 71/545 (13%)
Query: 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDL----EL 1055
+R L+ +G R +L T++ S+ R +AFFD T TG ++NR S+D ++L L
Sbjct: 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 140
Query: 1056 AGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQ 1115
+ L A + + I V +A V + PV+ I + Y +Y R+L ++ +
Sbjct: 141 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDS 196
Query: 1116 RAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCF-RLNLL 1174
A E + T+ AF +E ++ I+ ++ H + F R
Sbjct: 197 LAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLARKEAFARAGFF 249
Query: 1175 SNFVFAFSLVVLVTLPEGI----------------------INPSIAGLAVTYGINLNVL 1212
+ +L+VL L +G + SI GL+ Y + L
Sbjct: 250 GATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGL 309
Query: 1213 QAS-IIWNICNAENKMISVERILQYSNLP-SEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
A +W + E K LP +E ++ E+ G + F N+
Sbjct: 310 GAGGRLWELLEREPK------------LPFNEGVILNEKSFQ-------GALEFKNVHFA 350
Query: 1271 Y-AEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
Y A + ++ S + P ++ + R+ +P G+I +D DI +
Sbjct: 351 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNL-----DPLVQYSDKQVWEALDKCQLGDLVRAK 1384
+ LRS++G + Q+P LF ++ N+ DP + +++ + +R
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNF 469
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+ ++ V E G S GQ+Q + R LLK IL+LDEAT+++D+ + ++Q+ + +
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQN 1504
RTV+ IAHR+ T+ ++++V VL G+I EY +LL + + + +L M Q+
Sbjct: 530 MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL-----MNKQS 584
Query: 1505 FNSVA 1509
F S A
Sbjct: 585 FISAA 589
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 21/321 (6%)
Query: 547 GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRI 606
G+ +SV+ G ++ +T G + S L + I L S + +G + R+
Sbjct: 256 GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRL 315
Query: 607 AAYLQEDEIQRDAVEYVPKGRSEFE--VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVA 664
L E E + E V F+ +E N F++ P L + G A
Sbjct: 316 WELL-EREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTA 374
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNI 711
+ G GSGKS++LS +L +GT+ + G V Q P + + +I
Sbjct: 375 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434
Query: 712 RENILFGNQYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767
ENI +G S + R E V F G T +GE+G+ +SGGQKQRI I
Sbjct: 435 AENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494
Query: 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILV 827
ARA+ ++ I LLD+ SA+DA L ++ L ++ ++VL + H++ + A+++ V
Sbjct: 495 ARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAV 553
Query: 828 MENGRIAQAGRFEELLKQNIG 848
++ G+I + G+ EELL + G
Sbjct: 554 LDQGKITEYGKHEELLSKPNG 574
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 126/534 (23%), Positives = 232/534 (43%), Gaps = 64/534 (11%)
Query: 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDL----EL 1055
+R L+ +G R +L T++ S+ R +AFFD T TG ++NR S+D ++L L
Sbjct: 112 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 171
Query: 1056 AGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQ 1115
+ L A + + I V +A V + PV+ I + Y +Y R+L ++ +
Sbjct: 172 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDS 227
Query: 1116 RAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCF-RLNLL 1174
A E + T+ AF +E ++ I+ ++ H + F R
Sbjct: 228 LAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLARKEAFARAGFF 280
Query: 1175 SNFVFAFSLVVLVTLPEGI----------------------INPSIAGLAVTYGINLNVL 1212
+ +L+VL L +G + SI GL+ Y + L
Sbjct: 281 GATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGL 340
Query: 1213 QAS-IIWNICNAENKMISVERILQYSNLP-SEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
A +W + E K LP +E ++ E+ G + F N+
Sbjct: 341 GAGGRLWELLEREPK------------LPFNEGVILNEKSFQ-------GALEFKNVHFA 381
Query: 1271 Y-AEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
Y A + ++ S + P ++ + R+ +P G+I +D DI +
Sbjct: 382 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 441
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNL----DPLVQYSDKQVWEALDKCQLGDLVRAKE 1385
+ LRS++G + Q+P LF ++ N+ D + +++ + +R
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
+ ++ V E G S GQ+Q + R LLK IL+LDEAT+++D+ + ++Q+ + +
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 1446 KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499
RTV+ IAH + T+ ++++V VL G+I EY +LL + + + +L+ + S
Sbjct: 562 DGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 148/321 (46%), Gaps = 21/321 (6%)
Query: 547 GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRI 606
G+ +SV+ G ++ +T G + S L + I L S + +G + R+
Sbjct: 287 GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRL 346
Query: 607 AAYLQEDEIQRDAVEYVPKGRSEFE--VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVA 664
L E E + E V F+ +E N F++ P L + G A
Sbjct: 347 WELL-EREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTA 405
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNI 711
+ G GSGKS++LS +L +GT+ + G V Q P + + +I
Sbjct: 406 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 465
Query: 712 RENILFGNQYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767
ENI +G S + R E V F G T +GE+G+ +SGGQKQRI I
Sbjct: 466 AENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 525
Query: 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILV 827
ARA+ ++ I LLD+ SA+DA L ++ L ++ ++VL + H + + A+++ V
Sbjct: 526 ARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAV 584
Query: 828 MENGRIAQAGRFEELLKQNIG 848
++ G+I + G+ EELL + G
Sbjct: 585 LDQGKITEYGKHEELLSKPNG 605
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 134/521 (25%), Positives = 237/521 (45%), Gaps = 40/521 (7%)
Query: 990 LTVGSSLCVLLRAMLVAITGL-------RTAQKLFTNMLHSVHRAPMAFFDST----PTG 1038
L + + + +L+ A++ A+ G+ +Q ++ + R ++F S T
Sbjct: 61 LVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTS 120
Query: 1039 RILNRASNDQSVLDLELAGRLGWCAFSIIQILGTI--GVMSQVAWQVFVIFI--PVTGIC 1094
++ R +ND + L + L + + +G I V V +IF+ P+ +
Sbjct: 121 SLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLF 180
Query: 1095 IWYQQYYIPTARELARLA-EIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNH 1153
+W + P R++ E+ R E+L G + AF +E+ + N N +
Sbjct: 181 VWLTKKGNPLFRKIQESTDEVNRV-----VRENLLGVRVVRAFRREE-YENENFRKANES 234
Query: 1154 SRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGII----NPSIAGLAVTYGINL 1209
R +SA + F L L F+F ++ ++ L G + N G + Y L
Sbjct: 235 LRRSI--ISAFSLIVFALPL---FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYL 289
Query: 1210 NVLQASI--IWNICN-AENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDV-GTISFH 1265
+ S+ I NI N S +R+L+ N E P + EE P+V G++SF
Sbjct: 290 MQIMFSLMMIGNILNFIVRASASAKRVLEVLN---EKPAI-EEADNALALPNVEGSVSFE 345
Query: 1266 NLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNV 1325
N++ RY E+ VL ++ + L+ I R+++P G + +D +
Sbjct: 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLVQYSDKQVWEALDKCQLGDLVRAK 1384
D+ + L DLR + +PQ+ LF GT++ NL +D ++ EA Q+ D + +
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISL 465
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
E DS V G N+S GQ+Q + R L+KK +L+LD+ T+SVD T+ I + +
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
K T I +I T + +D +LVL +G++A + + +LLE
Sbjct: 526 TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 127/480 (26%), Positives = 213/480 (44%), Gaps = 43/480 (8%)
Query: 395 LYRKGLHLS-SQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTN 453
L+RK L S S + HTS +I ++ DV ++ + + M+ ++I + +L
Sbjct: 102 LFRKVLSFSISNVNRFHTS-SLITRLTNDVTQLQNLV-------MMLLRIVVRAPLLFVG 153
Query: 454 XXXXXXXXXXXXXXVMTCNIP--------ITRIQKRFQSKIMDAKDNRMRATSEVLKNMK 505
V+ IP +T+ KI ++ D R E L ++
Sbjct: 154 GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVR 213
Query: 506 TLKL----QAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACM 561
++ + + F + ESLR+ I SL + A FIF + I+V+ FG +
Sbjct: 214 VVRAFRREEYENENFRKANESLRR--SIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271
Query: 562 LLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVE 621
+ Q+ G +++ + + + ++L+ I + SA R+ L E +A
Sbjct: 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331
Query: 622 YVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCIL 681
+ E V N +F + E++ P L G+ VK G VA+ G GSGKS+L++ I
Sbjct: 332 ALALPNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390
Query: 682 GEIQKMAGTVKIS-------------GTKAYVPQSPWILTGNIRENILFGNQYDSCKYDR 728
I G V++ G + VPQ + +G I+EN+ +G + D
Sbjct: 391 RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDE 448
Query: 729 TVEAC--ALVKDFEL-FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFS 785
VEA A + DF + G + + G N SGGQKQR+ IARA+ + + +LDD S
Sbjct: 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508
Query: 786 AVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+VD T ++ D L K + +T ++ AD ILV+ G++A G +ELL+
Sbjct: 509 SVDPITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 2/246 (0%)
Query: 1256 WPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEP 1315
WP G ++ +L +Y E ++L+NIS + L+ A R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1316 TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKC 1375
T G I ID V I L R G+IPQ +F GT R NLDP +SD+++W+ D+
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
L ++ KLD + + G S G +QL CL R++L K+ IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE-DSFFSQL 1494
+I++ + Q F D TV+ RI +++ D LV+ + ++ +YDS +L D F +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 1495 IKEYSM 1500
I M
Sbjct: 253 IGSPKM 258
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 624 PKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683
P G + V+ + K++ E + L+ I + G +V + G GSGKS+LLS L
Sbjct: 15 PSG-GQMTVKDLTAKYT---EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-R 69
Query: 684 IQKMAGTVKISGT-----------KAY--VPQSPWILTGNIRENILFGNQYDSCKYDRTV 730
+ G ++I G KA+ +PQ +I +G R+N+ + + +
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 731 EACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
+ L E F + + G +S G KQ + +AR+V A I LLD+P + +D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842
T Q+ + L D +V+ ++E + D LV+E ++ Q EL
Sbjct: 190 T-YQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 143/588 (24%), Positives = 245/588 (41%), Gaps = 49/588 (8%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
W + K G +V + L +L AS+ +M P D VL+ L+
Sbjct: 17 WPTIAPFKAGLIVAGVAL------ILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLV 70
Query: 991 TVG-----------SSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGR 1039
+G SS C+ + V +T R +LF +M+ P++FFD TG
Sbjct: 71 VIGLMILRGITSYVSSYCISWVSGKVVMTMRR---RLFGHMMG----MPVSFFDKQSTGT 123
Query: 1040 ILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI---PVTGICIW 1096
+L+R + D + +G L I+G +M +WQ+ +I I P+ I I
Sbjct: 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAI- 182
Query: 1097 YQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSR- 1155
+ R +++ + + + L G + F ++ T + N R
Sbjct: 183 --RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK-RFDKVSNRMRL 239
Query: 1156 PWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQAS 1215
VSA + L+++ AF L + P + + + + V + + +++
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMDSLTAGTITVVFSSMIALMRPL 298
Query: 1216 IIWNICNAE--NKMISVER---ILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
NA+ M + + IL E V E G + F N+
Sbjct: 299 KSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERA--------TGDVEFRNVTFT 350
Query: 1271 YAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKI 1330
Y L+NI+ P + I R + G I++D D+ +
Sbjct: 351 YPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREY 410
Query: 1331 GLHDLRSRLGIIPQDPTLFDGTVRGNLD--PLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
L LR+++ ++ Q+ LF+ TV N+ QYS +Q+ EA D + + L
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL 470
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D+ + ENG S GQRQ + R LL+ S IL+LDEAT+++D+ ++ IQ + + K+R
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
T + IAHR+ T+ +D ++V+ DG I E + LLE ++QL K
Sbjct: 531 TSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHK 577
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 173/381 (45%), Gaps = 50/381 (13%)
Query: 480 KRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539
+ ++K D NRMR L+ MK + + +Q + SL
Sbjct: 223 QEVETKRFDKVSNRMR-----LQGMKMVSASSISDPIIQLIASL---------------- 261
Query: 540 TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQG 599
AF+ + + +F SV+ LTAG + ++ L P+ +L ++ + +G
Sbjct: 262 ALAFVLYAA-SFPSVMD---------SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 311
Query: 600 KVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKR 659
+ + L + E ++D + V + R+ +VE N F++ P P L I LK+
Sbjct: 312 MAACQTLFTIL-DSEQEKDEGKRVIE-RATGDVEFRNVTFTY-PGRDVPALRNINLKIPA 368
Query: 660 GMKVAICGTVGSGKSSLLSCIL-------GEIQKMAGTVK------ISGTKAYVPQSPWI 706
G VA+ G GSGKS++ S I GEI ++ + A V Q+ +
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHL 428
Query: 707 LTGNIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764
+ NI + QY + + + +G T IGE G+ +SGGQ+QR
Sbjct: 429 FNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488
Query: 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADI 824
I IARA+ +D+ I +LD+ SA+D + + + L + K+++ L + H++ + AD
Sbjct: 489 IAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547
Query: 825 ILVMENGRIAQAGRFEELLKQ 845
I+V+E+G I + G +LL+
Sbjct: 548 IVVVEDGVIVERGTHNDLLEH 568
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/496 (23%), Positives = 224/496 (45%), Gaps = 61/496 (12%)
Query: 395 LYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS---------------NYMFML 439
LY LS++ ++ G++I+ + DV++ DFI + MF L
Sbjct: 100 LYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159
Query: 440 PVQISLAIYILRTNXXXXXXXXXXXXXXVMTCNIPITRIQK--RFQSKIMDAKDNRMRAT 497
V+++LA + ++T + R++K R +S+ + +
Sbjct: 160 DVKLTLAALFI-------------FPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHER 206
Query: 498 SEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTF-----I 552
+ + +K+ ++ + + K + +L ++L+ + +A+ F T I
Sbjct: 207 VQGISVVKSFAIEDNEAKNFDKKNTN------FLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 553 SVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQE 612
V+ GA + + +T G + + + +L P+ L + + Q S DR+ + E
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320
Query: 613 DEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSG 672
D ++ V P + +++ + F +N ++ +P L I L +++G VA G G G
Sbjct: 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGG 379
Query: 673 KSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGN 719
KS+L++ I +G + I G V Q + + ++ENIL G
Sbjct: 380 KSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 439
Query: 720 QYDSCKYDRTVEACALVK--DFEL-FASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776
+ + VEA + DF + G TE+GERG+ +SGGQKQR+ IAR +
Sbjct: 440 P--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497
Query: 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836
I +LD+ SA+D + + + ++ L + KD++ L V H++ + AD I+V+ENG I +
Sbjct: 498 ILILDEATSALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556
Query: 837 GRFEELLKQNIGFEVL 852
G EL+ + +E L
Sbjct: 557 GTHRELIAKQGAYEHL 572
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 5/234 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGS 1319
G I ++ +Y ++ +LK+I+ + LI I R + T G
Sbjct: 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQ 1376
I+ID +I LR+++G++ QD LF TV+ N+ P +D++V EA
Sbjct: 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA--TDEEVVEAAKMAN 455
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
D + + D+ V E G S GQ+Q + R L IL+LDEAT+++D ++ +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSF 1490
IQ+ + KDRT + +AHR+ T+ +D ++V+ +G I E + +L+ ++ ++
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 569
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 142/588 (24%), Positives = 246/588 (41%), Gaps = 49/588 (8%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
W + K G +V I L +L AS+ +M P D VLL L+
Sbjct: 17 WPTIAPFKAGLIVAGIAL------ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 70
Query: 991 TVG-----------SSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGR 1039
+G SS C+ + V +T R +LF +M+ P+AFFD TG
Sbjct: 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRR---RLFGHMMG----MPVAFFDKQSTGT 123
Query: 1040 ILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIW 1096
+L+R + D + +G L I+G +M +WQ + V+ P+ I I
Sbjct: 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI- 182
Query: 1097 YQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSR- 1155
+ R +++ + + + L G + F ++ T + N R
Sbjct: 183 --RVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK-RFDKVSNKMRL 239
Query: 1156 PWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQAS 1215
VSA + L+++ AF L + P + + + + V + + +++
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMDSLTAGTITVVFSSMIALMRPL 298
Query: 1216 IIWNICNAE--NKMISVER---ILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
NA+ M + + IL E V + G + F N+
Sbjct: 299 KSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRA--------TGDLEFRNVTFT 350
Query: 1271 YAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKI 1330
Y L+NI+ P + I R + G I++D D+ +
Sbjct: 351 YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 410
Query: 1331 GLHDLRSRLGIIPQDPTLFDGTVRGNLD--PLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
L LR+++ ++ Q+ LF+ TV N+ +YS +Q+ EA D + + L
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL 470
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D+ + ENG S GQRQ + R LL+ S IL+LDEAT+++D+ ++ IQ + + K+R
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
T + IAHR+ T+ +D ++V+ DG I E + ++LL + ++QL K
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLHK 577
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 54/411 (13%)
Query: 471 CNIPITRIQKRFQSKIMDAKDNRMRATS---EVLKNMKTLKL---QAWDTRFLQK----- 519
+I I + KRF+S + ++ + T+ ++LK K + + Q +T+ K
Sbjct: 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 237
Query: 520 -LESLRQVEC-------IWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGR 571
L+ ++ V I L SL L AF+ + + +F SV+ LTAG
Sbjct: 238 RLQGMKMVSASSISDPIIQLIASLAL----AFVLYAA-SFPSVMD---------SLTAGT 283
Query: 572 VLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFE 631
+ ++ L P+ +L ++ + +G + + A L ++ + + + + + E
Sbjct: 284 ITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLE 343
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
N F++ P P L I LK+ G VA+ G GSGKS++ S I G +
Sbjct: 344 FR--NVTFTY-PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALV 736
+ G A V Q+ + + NI + + + ++ EA A
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYA 459
Query: 737 KDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
DF +G T IGE G+ +SGGQ+QRI IARA+ +D+ I +LD+ SA+D + +
Sbjct: 460 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERA 518
Query: 796 FKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ L + K+++ L + H++ + AD I+V+E+G I + G ELL Q+
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 126/588 (21%), Positives = 248/588 (42%), Gaps = 53/588 (9%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIV------- 983
W+Y+ K G +V I L ++ A Y ++ P +G N +
Sbjct: 17 WTYIRLYKAGLVVSTIALVINA-----AADTYMISLLKPLLDEGFGNAESNFLRILPFMI 71
Query: 984 ---LLVYTLLTVGSSLCVLLRAMLVAITG---LRTAQKLFTNMLHSVHRAPMAFFDSTPT 1037
+ V L SS C L ++G ++ ++LF + +H P+ FFD T
Sbjct: 72 LGLMFVRGLSGFASSYC------LSWVSGNVVMQMRRRLFNHFMH----MPVRFFDQEST 121
Query: 1038 GRILNRASNDQSVLDLELAGRLGWCAFSIIQ----ILGTIGVMSQVAWQVFVIFIPVTGI 1093
G +L+R + D ++AG SI++ I+G + +M +WQ+ ++ I V +
Sbjct: 122 GGLLSRITYDSE----QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPV 177
Query: 1094 CIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLSL 1149
+ + R+++R + + + L G + ++ ++ RF + S+
Sbjct: 178 VAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237
Query: 1150 IDNHSRPWFHNVSAMEWLCFRLNLLSNF-VFAFSLVVLVTLPEGIINPSIAGLAVTYGIN 1208
+ VSA + ++++ +FA + V + P + +
Sbjct: 238 ----RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFG 293
Query: 1209 LNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268
L ++ + M + + + +L +E E + DV ++F
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTF---- 349
Query: 1269 IRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDIT 1328
Y L ++S + P + R + GSI +D D+
Sbjct: 350 -TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
Query: 1329 KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ--YSDKQVWEALDKCQLGDLVRAKEE 1386
L +LR ++ Q+ LF+ T+ N+ + Y+ +Q+ +A + + + +
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK 1446
LD+ + ENG + S GQRQ + R LL+ + +L+LDEAT+++D+ ++ IQ + + K
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1447 DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
++TV+ IAHR+ T+ +D +LV+ +G I E LL +D ++QL
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA-QDGAYAQL 575
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 26/308 (8%)
Query: 566 QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPK 625
+LT G + L P+ L + S +G + + L + E +RD +Y +
Sbjct: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG-LMDLETERDNGKYEAE 336
Query: 626 GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ 685
R EV+V + F++ + P L + + +G VA+ G GSGKS++ +
Sbjct: 337 -RVNGEVDVKDVTFTYQGKEK-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394
Query: 686 KMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFG--NQYDSCKYDRTV 730
+G++ + G A V Q+ + I NI + +Y + ++
Sbjct: 395 VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAA 454
Query: 731 EACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
++ E G T IGE G ++SGGQ+QR+ IARA+ +DA + +LD+ SA+D
Sbjct: 455 RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFE 850
+ + + L + K+K+VL + H++ + AD ILV++ G I + GR +LL Q+
Sbjct: 515 S-ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD---- 569
Query: 851 VLVGAHSQ 858
GA++Q
Sbjct: 570 ---GAYAQ 574
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ--YSDKQV 1368
R +PT G I ID I I L + RS++G + QD + GT+R NL ++ Y+D+ +
Sbjct: 50 RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
W+ LD V ++L++ V E G S GQRQ + R L+ IL+LDEATAS
Sbjct: 110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 1429 VDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+DS ++ ++QK + K RT + IAHR+ T++D+D + + G+I
Sbjct: 170 LDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQI 215
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------ 697
+ S L I + + +A G G GKS++ S + Q AG + I G
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 698 -------AYVPQSPWILTGNIRENILFGNQYDSCKYDR-TVEACALVKDFELFASGDL-T 748
+V Q I+ G IREN+ +G + D D V A + F L T
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
E+GERG+ +SGGQ+QR+ IARA ++ I +LD+ +++D+ + + + K L ++K ++
Sbjct: 132 EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK-ALDSLMKGRT 190
Query: 809 VLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843
L + H++ + AD I +E G+I +G+ EL+
Sbjct: 191 TLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 12/266 (4%)
Query: 1222 NAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKN 1281
+ EN ++ + +LP PL ++ G I F N+ YA+ + L++
Sbjct: 24 DMENMFDLLKEETEVKDLPGAGPLRFQK----------GRIEFENVHFSYADGRET-LQD 72
Query: 1282 ISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341
+S T +++ +FR + + G I ID DI+++ LRS +G+
Sbjct: 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132
Query: 1342 IPQDPTLFDGTVRGNLD-PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400
+PQD LF+ T+ N+ V + +V A + D + A E + V E G S
Sbjct: 133 VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192
Query: 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTV 1460
G++Q + RT+LK I++LDEAT+++D++ + IQ +++ +RT + +AHR+ TV
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252
Query: 1461 IDSDLVLVLSDGRIAEYDSPTKLLER 1486
+++D +LV+ DG I E LL R
Sbjct: 253 VNADQILVIKDGCIVERGRHEALLSR 278
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 21/236 (8%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
KGR EFE N FS+ TL + V G +A+ G G+GKS++L +
Sbjct: 51 KGRIEFE----NVHFSY--ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104
Query: 685 QKMAGTVKISG------TKA-------YVPQSPWILTGNIRENILFGN-QYDSCKYDRTV 730
+G ++I G T+A VPQ + I +NI +G + + +
Sbjct: 105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA 164
Query: 731 EACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
+A + F G T++GERG+ +SGG+KQR+ IAR + + I LLD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT- 223
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ + + L + +++ + V H++ + AD ILV+++G I + GR E LL +
Sbjct: 224 SNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 3/227 (1%)
Query: 1261 TISFHNLQIRYAEHLPS-VLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGS 1319
I F ++ Y + LK+I+ P + + ++R + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGN-LDPLVQYSDKQVWEALDKCQLG 1378
I I ++ K + +RS +GI+PQD LF+ T++ N L + +D++V +A QL
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + A +K D+ V G S G+RQ + R LLK I++ DEAT+S+DS T+ + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
K + K+RT++ IAHR+ T+ ++ +++L+ G+I E + LL+
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 18/230 (7%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E + FS+ +++ TL I + G A+ G GSGKS++ + +L G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGDI 76
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYD--RTVEACALV 736
KI G VPQ + I+ NIL+G + D+ + + ++ L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLY 135
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
E T +G +G+ +SGG++QRI IAR + +D I + D+ S++D+ T LF
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLF 194
Query: 797 KDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ + + K+++++ + H++ + +A+ I+++ G+I + G ++LLK N
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P S ++V A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAH 119
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 6 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 64
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 65 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 124
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 125 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 183
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 184 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P S ++V A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAH 125
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 12 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 71 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 130
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 189
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P + S ++V A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM--SVEKVIYAAKLAGAH 121
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 8 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 66
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 67 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 126
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 127 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 185
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 186 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P + S ++V A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM--SVEKVIYAAKLAGAH 121
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 8 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDG 66
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 67 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 126
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 127 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 185
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 186 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P + S ++V A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM--SVEKVIYAAKLAGAH 125
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ D+AT+++D ++ VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 12 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 71 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 130
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D SA+D + + ++ +
Sbjct: 131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN-MH 189
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P S ++V A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAH 119
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IA R+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 6 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 64
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 65 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 124
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 125 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 183
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + ++ + AD I+VME G+I + G+ +ELL +
Sbjct: 184 KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 5/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + L + I R P G ++
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
ID D+ + LR ++G++ QD L + ++ N+ +P S ++V A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAH 125
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + + K RTV+ IA R+ TV ++D ++V+ G+I E +LL +S +S L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 16/224 (7%)
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
N +F + P+S LD I L +K+G + I G GSGKS+L I G V I G
Sbjct: 12 NIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70
Query: 696 TKAYVPQSPWI-------------LTGNIRENILFGNQYDSCKYDRTVEACALVKDF-EL 741
+ W+ L +I +NI N S + A DF
Sbjct: 71 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 130
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ +
Sbjct: 131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MH 189
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
I K ++V+ + ++ + AD I+VME G+I + G+ +ELL +
Sbjct: 190 KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 7/239 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSV--LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTM 1317
G + F ++ Y H P+V L+ ++ T + + + +PT
Sbjct: 15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD--KQVWEALDKC 1375
G +++D + + H L +++ + Q+P LF + R N+ + + +++ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
D + + D+ V E G S GQRQ L R L++K +L+LD+AT+++D+
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 1436 VIQKII--SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
+Q+++ S E+ RTV+ I H++ + +L L +G + E + +L+ER + S
Sbjct: 194 RVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK- 697
F++ + L G+ + G A+ G GSGKS++ + + Q G V + G
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83
Query: 698 ------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC-ALVKDF-ELFA 743
A V Q P + + RENI +G + T A + DF F
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFP 143
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
G TE+GE G +SGGQ+Q + +ARA+ + + +LD SA+DA G QL L+
Sbjct: 144 QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQLRVQRLLYE 201
Query: 804 LKD---KSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
+ ++VL +THQ+ A IL ++ G + + G +L+++ + +V
Sbjct: 202 SPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 112/239 (46%), Gaps = 7/239 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSV--LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTM 1317
G + F ++ Y H P+V L+ ++ T + + + +PT
Sbjct: 15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD--KQVWEALDKC 1375
G +++D + + H L +++ + Q+P LF + R N+ + + +++ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
D + + D+ V E G +VGQRQ L R L++K +L+LD AT+++D+
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1436 VIQKII--SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
+Q+++ S E+ RTV+ I ++ + +L L +G + E + +L+ER + S
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK- 697
F++ + L G+ + G A+ G GSGKS++ + + Q G V + G
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83
Query: 698 ------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC-ALVKDF-ELFA 743
A V Q P + + RENI +G + T A + DF F
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFP 143
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
G TE+GE G ++ GQ+Q + +ARA+ + + +LD+ SA+DA G QL L+
Sbjct: 144 QGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRLLYE 201
Query: 804 LKD---KSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
+ ++VL +T Q+ A IL ++ G + + G +L+++ + +V
Sbjct: 202 SPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 111/239 (46%), Gaps = 7/239 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSV--LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTM 1317
G + F ++ Y H P+V L+ ++ T + + + +PT
Sbjct: 15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD--KQVWEALDKC 1375
G +++D + + H L +++ + Q+P LF + R N+ + + +++ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
D + + D+ V E G S GQRQ L R L++K +L+LD AT+++D+
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1436 VIQKII--SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
+Q+++ S E+ RTV+ I ++ + +L L +G + E + +L+ER + S
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK- 697
F++ + L G+ + G A+ G GSGKS++ + + Q G V + G
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83
Query: 698 ------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC-ALVKDF-ELFA 743
A V Q P + + RENI +G + T A + DF F
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFP 143
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
G TE+GE G +SGGQ+Q + +ARA+ + + +LD+ SA+DA G QL L+
Sbjct: 144 QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRLLYE 201
Query: 804 LKD---KSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
+ ++VL +T Q+ A IL ++ G + + G +L+++ + +V
Sbjct: 202 SPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 22/249 (8%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V+ + F++ L G+ ++ G A+ G GSGKS++ + + Q G +
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
+ G A V Q P + +++ENI +G + + A A+
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE--ITAAAVKSG 132
Query: 739 FELFASG-----DLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793
F SG D TE+ E G +SGGQ+Q + +ARA+ + + +LDD SA+DA++
Sbjct: 133 AHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 794 QLFKDCLMGILK-DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVL 852
Q+ + + +SVL +T + + AD IL +E G I + G ++L+++ + +
Sbjct: 192 QVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 251
Query: 853 VGAHSQALE 861
V A + A E
Sbjct: 252 VQAPADAPE 260
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 102/194 (52%), Gaps = 7/194 (3%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLVQY 1363
L+Q ++ +PT G +++D + + L ++ + Q+P +F +++ N+ L Q
Sbjct: 62 LLQNLY---QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK 118
Query: 1364 -SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
+ +++ A K + + D+ V E G S GQRQ L R L++K +L+L
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 178
Query: 1423 DEATASVDSATDGVIQKII--SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480
D+AT+++D+ + +++++ S E R+V+ I + V +D +L L G I E +
Sbjct: 179 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTH 238
Query: 1481 TKLLEREDSFFSQL 1494
+L+E++ +++ +
Sbjct: 239 QQLMEKKGCYWAMV 252
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 36/244 (14%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK----------- 697
+LD + LKV+ G I G G+GK+ L I G +G + + G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 698 AYVPQSPWILTG-NIRENILFGNQYDSCK-YDRTVEACALVKDFELFASGDLTEIGERGI 755
A+V Q+ + N+++N+ FG + K R ++ +K L LT
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT------- 127
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---SVLYV 812
+SGG++QR+ +ARA+ + I LLD+P SA+D TQ ++ +L K +VL++
Sbjct: 128 -LSGGEQQRVALARALVTNPKILLLDEPLSALDPR--TQENAREMLSVLHKKNKLTVLHI 184
Query: 813 TH-QVEFLPAADIILVMENGRIAQAGRFEELLKQN--------IGFE-VLVGAHSQALES 862
TH Q E AD I V+ +G++ Q G+ EE+ ++ +GFE VL G A +
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQG 244
Query: 863 VLTV 866
+L +
Sbjct: 245 LLRI 248
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------Y 699
L + + + G + G GSGK++LL + G + AG + + G+ A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 700 VPQSP--WILTGNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
V Q+P I+ + E++ F + D + + ++ + A+ D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAAD-------P 138
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYV 812
+N+SGGQKQR+ IA + +D LD+P S +D + ++F+ ++ LK+ K ++ V
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ--VLESLKNEGKGIILV 196
Query: 813 THQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
TH++E+L D IL + NG I G +EE +++
Sbjct: 197 THELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD-GVIQKIISQEFKDRTVVTIAHR 1456
N S GQ+Q + L + + L LDE + +D + + Q + S + + + ++ + H
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+ + D D +L +S+G I S + +ERE
Sbjct: 200 LEYLDDMDFILHISNGTIDFCGSWEEFVERE 230
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 18/216 (8%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY-----V 700
++P L+ I L + G + I G G GK++LL C+ G Q +G + +SG + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 701 PQSPWILTGNIRENILFGNQ--YDSCKYD------RTVEACALVKD-FELFASGDLTEIG 751
P L ++E +LF + Y + Y RT + ++ EL +L G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA--G 133
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSVL 810
+SGGQ+QR +ARA+ D ++ LLD+PFSA+D Q+ +D + + + KS +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 811 YVTH-QVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+V+H + E L AD I VM+ GRI Q EL +Q
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 626 GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ 685
G EV V+ F L+ + L + G + + G GSGKS+LL + G I+
Sbjct: 1 GMGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 60
Query: 686 KMAGTVKISG--TKAYVPQSPWILTGNIRENILFGNQYDSCKY--DRTVEACA------- 734
+G V G K Y IR NI QY ++ +R + A
Sbjct: 61 PTSGDVLYDGERKKGY----------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY 110
Query: 735 -------LVKDFELFASGDLTEIGER-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSA 786
LVK F D +R +SGG+K+R+ IA + + DI +LD+P
Sbjct: 111 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 170
Query: 787 VDAHTGTQLFKDCLMGILKDKSVLYVTHQVE-FLPAADIILVMENGRIAQAGRFEELLKQ 845
+D T L + K+V+ ++H +E + D ++V+E G+ G E L++
Sbjct: 171 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS 1364
L+Q + ++EPT G ++ D K G +++R +GI Q P D + V ++
Sbjct: 51 LLQIVAGLIEPTSGDVLYDGE--RKKG-YEIRRNIGIAFQYPE--DQFFAERVFDEVAFA 105
Query: 1365 DKQVWEALDKCQLGDLVRAKEE----KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420
K + D L V+ E DS S G+++ + ++ + IL
Sbjct: 106 VKNFYPDRDPVPL---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 162
Query: 1421 VLDEATASVDSATDGVIQKIISQ-EFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIAEYD 1478
+LDE +D + +I+ + + +TV+ I+H I TVI+ D V+VL G+
Sbjct: 163 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 222
Query: 1479 SPTKLLEREDSFF 1491
+ + LE+ D F
Sbjct: 223 TRMEFLEKYDPRF 235
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 32/236 (13%)
Query: 632 VEVVNGK--FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG 689
+EVVN F L+ + L + G + + G GSGKS+LL + G I+ +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 690 TVKISG--TKAYVPQSPWILTGNIRENILFGNQYDSCKY--DRTVEACA----------- 734
V G K Y IR NI QY ++ +R + A
Sbjct: 63 DVLYDGERKKGY----------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD 112
Query: 735 ---LVKDFELFASGDLTEIGER-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
LVK F D +R +SGG+K+R+ IA + + DI +LD+P +D
Sbjct: 113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVE-FLPAADIILVMENGRIAQAGRFEELLKQ 845
T L + K+V+ ++H +E + D ++V+E G+ G E L++
Sbjct: 173 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS 1364
L+Q + ++EPT G ++ D K G +++R +GI Q P D + V ++
Sbjct: 49 LLQIVAGLIEPTSGDVLYDGE--RKKG-YEIRRNIGIAFQYPE--DQFFAERVFDEVAFA 103
Query: 1365 DKQVWEALDKCQLGDLVRAKEE----KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420
K + D L V+ E DS S G+++ + ++ + IL
Sbjct: 104 VKNFYPDRDPVPL---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160
Query: 1421 VLDEATASVDSATDGVIQKIISQ-EFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIAEYD 1478
+LDE +D + +I+ + + +TV+ I+H I TVI+ D V+VL G+
Sbjct: 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220
Query: 1479 SPTKLLEREDSFF 1491
+ + LE+ D F
Sbjct: 221 TRMEFLEKYDPRF 233
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP----- 704
L+ I LK+K G +A+ G GSGKS+LL I G + +G KI + V + P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG--KIYFDEKDVTELPPKDRN 76
Query: 705 -------WILTGN--IRENILFGNQYDSC---KYDRTVEACALVKDFELFASGDLTEIGE 752
W L + + +NI F + + D+ V A + + +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL-------LNR 129
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV--L 810
+SGGQ+QR+ IARA+ ++ ++ LLD+P S +DA ++ + L + K+ + +
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE-LKRLQKELGITTV 188
Query: 811 YVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
YVTH Q E L AD I V+ G I Q G +E+
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 38/197 (19%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLVQ 1362
L+ I I +PT G I D D+T++ D +G++ Q+ L+ TV N+ PL
Sbjct: 45 LLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPL-- 100
Query: 1363 YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE-----------NGENW--SVGQRQLFCL 1409
+L +A E++D V E N W S GQ+Q +
Sbjct: 101 ----------------ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAI 144
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQ---KIISQEFKDRTVVTIAHRIHTVIDSDLV 1466
R L+K+ +L+LDE +++D+ ++ K + +E TV + + +D +
Sbjct: 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRI 204
Query: 1467 LVLSDGRIAEYDSPTKL 1483
V+ +G I + +P ++
Sbjct: 205 AVIREGEILQVGTPDEV 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCI------------LGEIQKMAGTVKISGTKAYV 700
I L + G V G G GKS+LL I +GE ++M T V
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMNDTPPAERGVGMV 80
Query: 701 PQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759
QS + ++ EN+ FG + K + + V + A + + +SG
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALSG 136
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL-FKDCLMGILKDKSVLYVTH-QVE 817
GQ+QR+ I R + + ++LLD+P S +DA Q+ + + ++++YVTH QVE
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 818 FLPAADIILVMENGRIAQAGRFEEL 842
+ AD I+V++ GR+AQ G+ EL
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAH-R 1456
S GQRQ +GRTL+ + S+ +LDE +++D+A ++ IS+ K RT++ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLE-REDSFFSQLIKEYSM 1500
+ + +D ++VL GR+A+ P +L D F + I M
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCI------------LGEIQKMAGTVKISGTKAYV 700
I L + G V G G GKS+LL I +GE ++M T V
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMNDTPPAERGVGMV 80
Query: 701 PQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759
QS + ++ EN+ FG + K + + V + A + + +SG
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALSG 136
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL-FKDCLMGILKDKSVLYVTH-QVE 817
GQ+QR+ I R + + ++LLD+P S +DA Q+ + + ++++YVTH QVE
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 818 FLPAADIILVMENGRIAQAGRFEEL 842
+ AD I+V++ GR+AQ G+ EL
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAH-R 1456
S GQRQ +GRTL+ + S+ +LDE +++D+A ++ IS+ K RT++ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLE-REDSFFSQLIKEYSM 1500
+ + +D ++VL GR+A+ P +L D F + I M
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA--YVPQS--- 703
++ G+ +++ G V + G GSGK+++L I G + G V I G + PQ
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 704 -------PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN 756
+ +N+ FG + D E A V++ F L R +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKD---EMDARVRELLRFMR--LESYANRFPH 144
Query: 757 -MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV--LYVT 813
+SGGQ+QR+ +ARA+ + L D+PF+A+D +L + + + + V ++VT
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-RTFVRQVHDEMGVTSVFVT 203
Query: 814 H-QVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
H Q E L AD +LV+ G + Q G EE+ ++
Sbjct: 204 HDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 10/191 (5%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQY 1363
+++ I + PT G + I +T L + +G++ Q+ LF TV N+
Sbjct: 57 ILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVS--FGL 112
Query: 1364 SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
+K+V + ++ +L+R +L+S S GQ+Q L R L + +L+ D
Sbjct: 113 REKRVPKDEMDARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD 170
Query: 1424 EATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480
E A++D+ ++ + Q + T V + H ++ +D VLVL +G + ++ +P
Sbjct: 171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
Query: 1481 TKLLEREDSFF 1491
++ E+ + F
Sbjct: 231 EEVYEKPGTLF 241
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCI------------LGEIQKMAGTVKISGTKAYV 700
I L + G V G G GKS+LL I +GE ++M T V
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMNDTPPAERGVGMV 80
Query: 701 PQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759
QS + ++ EN+ FG + K + + V + A + + +SG
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALSG 136
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL-FKDCLMGILKDKSVLYVTH-QVE 817
GQ+QR+ I R + + ++LLD P S +DA Q+ + + ++++YVTH QVE
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 818 FLPAADIILVMENGRIAQAGRFEEL 842
+ AD I+V++ GR+AQ G+ EL
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAH-R 1456
S GQRQ +GRTL+ + S+ +LD+ +++D+A ++ IS+ K RT++ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLE-REDSFFSQLIKEYSM 1500
+ + +D ++VL GR+A+ P +L D F + I M
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------AYVPQSPWILTG-NIR 712
+ G G+GKS L I G ++ G V+++G +VPQ + ++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 713 ENILFGNQYDSCKYDRTVEACALVKDFELFAS--GDLTEIGERGINMSGGQKQRIQIARA 770
NI +G R VE + A G + + +SGG++QR+ +ARA
Sbjct: 89 RNIAYGL--------RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK------DKSVLYVTHQ-VEFLPAAD 823
+ + LLD+P SAVD T K LM L+ D +L+VTH +E AD
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKT-----KGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 824 IILVMENGRIAQAGRFEELLKQNIG 848
+ VM NGRI + G+ +EL G
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD------GTVRGNLD 1358
++ I IV+P G + ++ DIT L R +G +PQD LF G +
Sbjct: 40 FLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN 97
Query: 1359 PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418
D++V E +K + L+ K +L S G+RQ L R L+ +
Sbjct: 98 VERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRVALARALVIQPR 146
Query: 1419 ILVLDEATASVDSATDGVIQ---KIISQEFKDRTVVTIAHRIHTVID----SDLVLVLSD 1471
+L+LDE ++VD T GV+ + + +EF V I H H +I+ +D V V+ +
Sbjct: 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFD----VPILHVTHDLIEAAMLADEVAVMLN 202
Query: 1472 GRIAE 1476
GRI E
Sbjct: 203 GRIVE 207
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI------SGTKAYVPQ 702
LD + + ++ G + I G G+GK++ + I G G + S K VP
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 703 SP---------WILTGNIR--ENILF---GNQYDSCKYDRTVEACALVKDFELFASGDLT 748
W L N+ ENI F + + + VE A + D +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
E +SGGQ+QR+ +ARA+ +D + LLD+PFS +DA +D ++K+
Sbjct: 140 E-------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR-----MRDSARALVKEVQ 187
Query: 807 ----KSVLYVTHQ-VEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV--LVGAHSQA 859
++L V+H + AD + V+ G++ Q G+ E+L + +V L+G ++
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE- 246
Query: 860 LESVLTVE 867
LE +T E
Sbjct: 247 LEGKVTNE 254
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHT 1459
S GQ+Q L R L+K S+L+LDE +++D+ + ++ +E + R VT+ H
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHD 200
Query: 1460 VID----SDLVLVLSDGRIAEYDSPTKLLE 1485
D +D V VL G++ + P L +
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 30/179 (16%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQ---SPWILTG 709
+ + +G +A+ G G GKS+LL +LG + + G +++ + +VPQ SP+ +
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS- 82
Query: 710 NIRENILFG-----NQYDSCK-YDRTVEACALVKDFELFASGDLTEIGERGI-NMSGGQK 762
+ + +L G N + K +D V AL D+ +LT + +R ++SGGQ+
Sbjct: 83 -VLDIVLMGRSTHINTFAKPKSHDYQVAMQAL--DYL-----NLTHLAKREFTSLSGGQR 134
Query: 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------KSVLYVTHQ 815
Q I IARA+ + + LLD+P SA+D +D ++ +L D +V++ THQ
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLAN-----QDIVLSLLIDLAQSQNMTVVFTTHQ 188
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 1365 DKQV-WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
D QV +ALD L L + + L S GQRQL + R + + +++LD
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSL-----------SGGQRQLILIARAIASECKLILLD 153
Query: 1424 EATASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVI 1461
E T+++D A ++ ++ + ++ TVV H+ + V+
Sbjct: 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV 193
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI------SGTKAYVPQ 702
LD + + ++ G + I G G+GK++ + I G G + S K VP
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 703 SP---------WILTGNIR--ENILF---GNQYDSCKYDRTVEACALVKDFELFASGDLT 748
W L N+ ENI F + + + VE A + D +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
E +SG Q+QR+ +ARA+ +D + LLD+PFS +DA +D ++K+
Sbjct: 140 E-------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR-----MRDSARALVKEVQ 187
Query: 807 ----KSVLYVTHQ-VEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV--LVGAHSQA 859
++L V+H + AD + V+ G++ Q G+ E+L + +V L+G ++
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE- 246
Query: 860 LESVLTVE 867
LE +T E
Sbjct: 247 LEGKVTNE 254
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHT 1459
S Q+Q L R L+K S+L+LDE +++D+ + ++ +E + R VT+ H
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHD 200
Query: 1460 VID----SDLVLVLSDGRIAEYDSPTKLLE 1485
D +D V VL G++ + P L +
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LDG+ + V +G I G GSGKS+L++ I G ++ G V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 698 --AYVPQSPWILTG-NIRENILFG------NQYDSCKYDRTV--EACALVKDFELFASGD 746
Q+P L + EN+L G + +S Y + + E + K F++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L+ + +R +SGGQ + ++I RA+ + + ++D+P + V +F L K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 806 DKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLK 844
+ L + H+++ L D + VM NG+I GR EE +K
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 34.3 bits (77), Expect = 0.62, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIISQEFKDRTVVTIAHRIH 1458
S GQ +L +GR L+ ++V+DE A V + ++ + K T + I HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1459 TVIDS-DLVLVLSDGRI 1474
V++ D + V+ +G+I
Sbjct: 215 IVLNYIDHLYVMFNGQI 231
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 25/220 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LDG+ + V +G I G GSGKS+L++ I G ++ G V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 698 --AYVPQSPWILTG-NIRENILFG------NQYDSCKYDRTV--EACALVKDFELFASGD 746
Q+P L + EN+L G + +S Y + + E + K F++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L+ + +R +SGGQ + ++I RA+ + + ++D P + V +F L K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 806 DKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLK 844
+ L + H+++ L D + VM NG+I GR EE +K
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIISQEFKDRTVVTIAHRIH 1458
S GQ +L +GR L+ ++V+D+ A V + ++ + K T + I HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1459 TVIDS-DLVLVLSDGRI 1474
V++ D + V+ +G+I
Sbjct: 215 IVLNYIDHLYVMFNGQI 231
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LDG+ + V +G I G GSGKS+L++ I G ++ G V
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 698 --AYVPQSPWILTG-NIRENILFG------NQYDSCKYDRTV--EACALVKDFELFASGD 746
Q+P L + EN+L G + +S Y + + E + K F++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L+ + +R +SGGQ + ++I RA+ + + ++D+P + V +F L K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 806 DKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLK 844
+ L + H+++ L D + VM NG+I GR EE +K
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 34.3 bits (77), Expect = 0.62, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIISQEFKDRTVVTIAHRIH 1458
S GQ +L +GR L+ ++V+DE A V + ++ + K T + I HR+
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 1459 TVIDS-DLVLVLSDGRI 1474
V++ D + V+ +G+I
Sbjct: 215 IVLNYIDHLYVMFNGQI 231
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWILT 708
++ + L +K G + + G G GK++ L I G + G + Y+P ++
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 709 G-----------NIRENILFG---NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
+ ENI F ++ + D+ V A EL +L +
Sbjct: 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-----ELLQIEEL--LNRYP 139
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVT 813
+SGGQ+QR+ +ARA+ + D+ L+D+P S +DA + + K K + +YVT
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 814 H-QVEFLPAADIILVMENGRIAQAG 837
H QVE + D I VM G++ Q G
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIG 224
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDS----ATDGVIQKIISQEFKDRTVVTIAH 1455
S GQRQ + R ++ + +L++DE +++D+ A I+K + Q+ K T+
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHD 201
Query: 1456 RIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
++ + D + V++ G++ + SPT++ R +S F
Sbjct: 202 QVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWILT 708
++ + L +K G + + G G GK++ L I G + G + Y+P ++
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 709 G-----------NIRENILFG---NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
+ ENI F ++ + D+ V A EL +L +
Sbjct: 88 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-----ELLQIEEL--LNRYP 140
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVT 813
+SGGQ+QR+ +ARA+ + D+ L+D+P S +DA + + K K + +YVT
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 814 H-QVEFLPAADIILVMENGRIAQAG 837
H QVE + D I VM G++ Q G
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIG 225
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDS----ATDGVIQKIISQEFKDRTVVTIAH 1455
S GQRQ + R ++ + +L++DE +++D+ A I+K + Q+ K T+
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHD 202
Query: 1456 RIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
++ + D + V++ G++ + SPT++ R +S F
Sbjct: 203 QVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 53/222 (23%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + L +K G V+I G GSGKS++L+ I+G + K P +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDK--------------PTEGEVYID 65
Query: 710 NIRENILFGNQYDSCKYDRT---------VEACALVKDFEL--------FASGD------ 746
NI+ N L ++ + D+ + +++ EL SG+
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA 125
Query: 747 -----LTEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
+ E+ ER N +SGGQ+QR+ IARA+ + I L D P A+D+ TG ++
Sbjct: 126 LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
Query: 797 KDCLMGILKD---KSVLYVTHQVEFLPAADIILVMENGRIAQ 835
+ L+ L + K+V+ VTH + + I+ +++G + +
Sbjct: 186 Q--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 1314 EPTMGSIIIDNVDITKIGLHDL----RSRLGIIPQDPTLFDG-TVRGNLD-PLV-QYSDK 1366
+PT G + IDN+ + +L R ++G + Q L T N++ PL+ +Y
Sbjct: 56 KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA 115
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGEN-WSVGQRQLFCLGRTLLKKSSILVLDEA 1425
E K L L K +L+ A + N S GQ+Q + R L I++ D+
Sbjct: 116 MSGEERRKRALECL---KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 1426 TASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
T ++DS T I +++ + E +TVV + H I+ + ++ L DG +
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L+ + L V G + G G+GKS+L+ C+ + G+V + G + S LT
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK 79
Query: 710 NIRE--------NIL-----FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG-- 754
R+ N+L FGN + D T + + EL + L +G++
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDS 136
Query: 755 --INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------ 806
N+SGGQKQR+ IARA+ + + L D+ SA+D T + + +LKD
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-----LLKDINRRLG 191
Query: 807 KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
++L +TH+++ + D + V+ NG + + E+
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 1279 LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL--- 1335
L N+S P LI+ + + PT GS+++D ++T + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1336 RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSD-------KQVWEALDKCQLGDLVRAKEEK 1387
R ++G+I Q L TV GN+ ++ + ++V E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 133
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD 1447
DS + N S GQ+Q + R L +L+ DEAT+++D AT I +++ ++
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL-KDINR 188
Query: 1448 R---TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
R T++ I H + V D V V+S+G + E D+ +++ + +Q
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 33/217 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L+ + L V G + G G+GKS+L+ C+ + G+V + G + S LT
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK 102
Query: 710 NIRE--------NIL-----FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG-- 754
R+ N+L FGN + D T + + EL + L +G++
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDS 159
Query: 755 --INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------ 806
N+SGGQKQR+ IARA+ + + L D SA+D T + + +LKD
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-----LLKDINRRLG 214
Query: 807 KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
++L +TH+++ + D + V+ NG + + E+
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 1279 LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL--- 1335
L N+S P LI+ + + PT GS+++D ++T + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1336 RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSD-------KQVWEALDKCQLGDLVRAKEEK 1387
R ++G+I Q L TV GN+ ++ + ++V E L LGD K
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD 1447
DS + N S GQ+Q + R L +L+ D+AT+++D AT I +++ ++
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL-KDINR 211
Query: 1448 R---TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
R T++ I H + V D V V+S+G + E D+ +++ + +Q
Sbjct: 212 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 1305 LIQAIFRIVEPTMGSIIIDN--VDITKIGLHDLRSRLGIIPQDP--TLFDGTVRGNLDPL 1360
L Q I++P+ G I+ DN +D ++ G+ LR +GI+ QDP LF +V
Sbjct: 50 LFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV------- 102
Query: 1361 VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN-----WSVGQRQLFCLGRTLLK 1415
Y D K ++ + + L T E+ ++ S GQ++ + L+
Sbjct: 103 --YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160
Query: 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTV-IDSDLVLVLSDG 1472
+ +L+LDE TA +D I K++ + K+ T++ H I V + D V V+ +G
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220
Query: 1473 RIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501
R+ +P ++ + ++I++ ++R
Sbjct: 221 RVILQGNPKEVFAEK-----EVIRKVNLR 244
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 106/229 (46%), Gaps = 27/229 (11%)
Query: 638 KFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV------ 691
+ ++N + L GI + +KRG AI G G GKS+L G ++ +G +
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71
Query: 692 ---------KISGTKAYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFE 740
K+ + V Q P + + ++ +++ FG D + D
Sbjct: 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV----DNA 127
Query: 741 LFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
L +G + + ++ + +S GQK+R+ IA + + + +LD+P + +D +++ K
Sbjct: 128 LKRTG-IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK-L 185
Query: 800 LMGILKDK--SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
L+ + K+ +++ TH ++ +P D + VM+ GR+ G +E+ +
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L+ + L V G + G G+GKS+L+ C+ + G+V + G + S LT
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK 102
Query: 710 NIRE--------NIL-----FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG-- 754
R+ N+L FGN + D T + + EL + L +G++
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDS 159
Query: 755 --INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------ 806
N+SGGQKQR+ IARA+ + + L D SA+D T + + +LKD
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-----LLKDINRRLG 214
Query: 807 KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
++L +TH+ + + D + V+ NG + + E+
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 27/230 (11%)
Query: 1279 LKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL--- 1335
L N+S P LI+ + + PT GS+++D ++T + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1336 RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSD-------KQVWEALDKCQLGDLVRAKEEK 1387
R ++G I Q L TV GN+ ++ + ++V E L LGD K
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD 1447
DS + N S GQ+Q + R L +L+ D+AT+++D AT I +++ ++
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL-KDINR 211
Query: 1448 R---TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
R T++ I H V D V V+S+G + E D+ +++ + +Q
Sbjct: 212 RLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENI 715
++++G + I G G GK++ + + G + G V+ T AY PQ
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------------- 424
Query: 716 LFGNQYDSCKYD--RTVEACALVKDF---ELFASGDLTEIGERGI-NMSGGQKQRIQIAR 769
+Y+ Y+ +++ L +F EL + ++ +R + ++SGG+ QR+ IA
Sbjct: 425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVLYVTHQVEFLPAADIILVM 828
+ +DADIYLLD+P + +D + + + K +K+ L V H V + L++
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544
Query: 829 ENGRIAQAGR 838
G + GR
Sbjct: 545 FEGEPGRHGR 554
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 42/201 (20%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILG-----------------------EIQKM-----A 688
VK GM V I G G+GK++ + + G E+Q
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 689 GTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
G ++ YV P + G +RE + ++ + V D EL
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH------ 227
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
+SGG+ QR+ IA A+ + A Y D+P S +D ++ + + K+
Sbjct: 228 -------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 280
Query: 809 VLYVTHQVEFLPA-ADIILVM 828
VL V H + L +D+I V+
Sbjct: 281 VLVVEHDLAVLDYLSDVIHVV 301
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ--EFKDRTVVT 1452
N E+ S G+ Q + TLL+ + I +LDE +A +D + + I E ++T +
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1453 IAHR---IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ H I V D +V GR P + E + F + +
Sbjct: 528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASV 572
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIR 712
+ L+VK G + + G G GK++ L I G + G + I P+ + R
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 713 ENILFGNQY----DSCKYDRTVEACALVKDFELFASGDLTEIGE----------RGINMS 758
+ + Y YD L K + E+ E + +S
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV--LYVTH-Q 815
GGQ+QR+ + RA+ + ++L+D+P S +DA ++ + L + + V +YVTH Q
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKKLQRQLGVTTIYVTHDQ 200
Query: 816 VEFLPAADIILVMENGRIAQAGRFEEL 842
VE + D I VM G + Q G +E+
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
Q D++V E + L +L+ K +L S GQRQ LGR +++K + +
Sbjct: 114 QEIDQRVREVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFL 162
Query: 1422 LDEATASVDSATDGVIQ---KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYD 1478
+DE +++D+ ++ K + ++ T+ ++ + D + V++ G + +
Sbjct: 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
Query: 1479 SPTKLLEREDSFF 1491
SP ++ ++ + F
Sbjct: 223 SPDEVYDKPANTF 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 55/227 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + L +K G V+I G GSGKS++L+ I+G + K P +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDK--------------PTEGEVYID 65
Query: 710 NIRENILFGNQYDSCKYDR------------------TVEACALVKDFELFASGD----- 746
NI+ N L ++ + D+ VE L+ + SG+
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE-LPLIFKYRGAMSGEERRKR 124
Query: 747 ------LTEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
+ E+ ER N +SGGQ+QR+ IARA+ + I L D P A+D+ TG ++
Sbjct: 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 796 FKDCLMGILKD---KSVLYVTHQVEFLPAADIILVMENGRIAQAGRF 839
+ L+ L + K+V+ VTH + + I+ +++G + + +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 19/218 (8%)
Query: 1270 RYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
+ E + LKN++ ++ I + +PT G + IDN+
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 1330 IGLHDL----RSRLGIIPQD----PTLFDGTVRGNLD-PLV-QYSDKQVWEALDKCQLGD 1379
+ +L R ++G + Q P L T N++ PL+ +Y E K L
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 1380 LVRAKEEKLDSTVAENGENW-SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
L A+ L+ A + N S GQ+Q + R L I++ D+ T ++DS T I
Sbjct: 129 LKMAE---LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 1439 KIISQ--EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+++ + E +TVV + H I+ + ++ L DG +
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENI 715
++++G + I G G GK++ + + G + G V+ T AY PQ
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------------- 410
Query: 716 LFGNQYDSCKYD--RTVEACALVKDF---ELFASGDLTEIGERGI-NMSGGQKQRIQIAR 769
+Y+ Y+ +++ L +F EL + ++ +R + ++SGG+ QR+ IA
Sbjct: 411 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 470
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVLYVTHQVEFLPAADIILVM 828
+ +DADIYLLD+P + +D + + + K +K+ L V H V + L++
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
Query: 829 ENGRIAQAGR 838
G + GR
Sbjct: 531 FEGEPGRHGR 540
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 42/201 (20%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILG-----------------------EIQKM-----A 688
VK GM V I G G+GK++ + + G E+Q
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 689 GTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
G ++ YV P + G +RE + ++ + V D EL
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH------ 213
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
+SGG+ QR+ IA A+ + A Y D+P S +D ++ + + K+
Sbjct: 214 -------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 266
Query: 809 VLYVTHQVEFLPA-ADIILVM 828
VL V H + L +D+I V+
Sbjct: 267 VLVVEHDLAVLDYLSDVIHVV 287
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ--EFKDRTVVT 1452
N E+ S G+ Q + TLL+ + I +LDE +A +D + + I E ++T +
Sbjct: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 1453 IAHR---IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ H I V D +V GR P + E + F + +
Sbjct: 514 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASV 558
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 53/222 (23%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + L +K G V+I G GSGKS+ L+ I+G + K P +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDK--------------PTEGEVYID 65
Query: 710 NIRENILFGNQYDSCKYDRT---------VEACALVKDFEL--------FASGD------ 746
NI+ N L ++ + D+ + +++ EL SG+
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRA 125
Query: 747 -----LTEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
E+ ER N +SGGQ+QR+ IARA+ + I L D+P A+D+ TG ++
Sbjct: 126 LECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIX 185
Query: 797 KDCLMGILKD---KSVLYVTHQVEFLPAADIILVMENGRIAQ 835
+ L+ L + K+V+ VTH + + I+ +++G + +
Sbjct: 186 Q--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 1314 EPTMGSIIIDNVDITKIGLHDL----RSRLGIIPQDPTLFDG-TVRGNLD-PLV-QYSDK 1366
+PT G + IDN+ + +L R ++G + Q L T N++ PL+ +Y
Sbjct: 56 KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA 115
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGEN-WSVGQRQLFCLGRTLLKKSSILVLDEA 1425
E K L L K +L+ A + N S GQ+Q + R L I++ DE
Sbjct: 116 XSGEERRKRALECL---KXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 1426 TASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
T ++DS T I +++ + E +TVV + H I+ + ++ L DG +
Sbjct: 173 TGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENI 715
++K+G + I G G GK++ + + G + G ++ T AY PQ
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ------------- 354
Query: 716 LFGNQYDSCKYD--RTVEACALVKDF---ELFASGDLTEIGERGIN-MSGGQKQRIQIAR 769
Y+ Y+ ++A L +F EL + ++ +R +N +SGG+ QR+ IA
Sbjct: 355 YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA 414
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVLYVTHQVEFLPAADIILVM 828
+ +DADIYLLD+P + +D + + K +K+ L V H V + L +
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXV 474
Query: 829 ENGRIAQAGR 838
G + GR
Sbjct: 475 FEGEPGKYGR 484
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 44/202 (21%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEI---------------------------QKMA- 688
VK G V I G G+GKS+ + + G++ +K+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 689 GTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
G ++ YV P + G + E + K D T + +VK EL
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELL--------KKADETGKLEEVVKALEL------E 149
Query: 749 EIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+ ER I ++SGG+ QR+ IA A+ ++A Y D+P S +D + + K
Sbjct: 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 808 SVLYVTHQVEFLPA-ADIILVM 828
SVL V H + L +DII V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVV 231
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 32/245 (13%)
Query: 623 VPKGRSEFE-VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI- 680
VP+G + ++V K S+ S L GI + ++ G V + G GSGKS+ L C+
Sbjct: 15 VPRGSHMLQMIDVHQLKKSF---GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
Query: 681 -LGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENI--------LFGNQ-------YDSC 724
L + + G + I G + +RE + LF +
Sbjct: 72 LLEDFDE--GEIIIDGINLKAKDTN---LNKVREEVGMVFQRFNLFPHMTVLNNITLAPM 126
Query: 725 KYDRTVEACALVKDFELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDP 783
K + A K EL L + + +SGGQ QR+ IARA+ + I L D+P
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 784 FSAVDAHTGTQLFKDCLMGILKDK--SVLYVTHQVEFL-PAADIILVMENGRIAQAGRFE 840
SA+D ++ +M L ++ +++ VTH++ F D +L M+ G I + G+ E
Sbjct: 187 TSALDPEMVGEVLS--VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244
Query: 841 ELLKQ 845
+L +
Sbjct: 245 DLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTKAYVPQS 703
S L GI + ++ G V + G GSGKS+ L C+ L + + G + I G +
Sbjct: 15 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE--GEIIIDGINLKAKDT 72
Query: 704 PWILTGNIRENI--------LFGNQ-------YDSCKYDRTVEACALVKDFELFASGDLT 748
+RE + LF + K + A K EL L
Sbjct: 73 N---LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK 129
Query: 749 EIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+ + +SGGQ QR+ IARA+ + I L D+P SA+D ++ +M L ++
Sbjct: 130 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANE 187
Query: 808 --SVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQ 845
+++ VTH++ F D +L M+ G I + G+ E+L +
Sbjct: 188 GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-MAGTVKISGTKA-YVPQSPWIL 707
L GI L VK+G V+I G GSGKS+LL ILG + G V + G + Y + L
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 708 TGNIRENILFGNQY-------------DSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
N + +F Y K + + ++ L G ++ +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVLYVT 813
+SGG++QR+ IARA+ + + D+P +D+ T+ D + I + S++ VT
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDS-ANTKRVMDIFLKINEGGTSIVMVT 197
Query: 814 HQVEFLPAADIILVMENGRI 833
H+ E L M++G++
Sbjct: 198 HERELAELTHRTLEMKDGKV 217
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 25/184 (13%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV--------KISGTKAY 699
P L+ I + +++G V G G GK++LL I ++ + G + K+ G +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 700 VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK-----DFELFASGDLTEIGERG 754
+P E I+ + Y + V + VK + S ++ ++ ++
Sbjct: 83 LP-----------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKL 131
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTH 814
+S G +R+Q+A + +A+IY+LDDP A+D + ++ K ++ ILK+K ++ ++
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISS 190
Query: 815 QVEF 818
+ E
Sbjct: 191 REEL 194
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 23/158 (14%)
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPL--- 1360
L++ I ++P G II + V ITK+ + ++ +P++ + +V L +
Sbjct: 51 LLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASL 105
Query: 1361 --VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418
V+ + ++ +AL+ ++ DL ++KL GE S G + L TLL +
Sbjct: 106 YGVKVNKNEIMDALESVEVLDL----KKKL-------GE-LSQGTIRRVQLASTLLVNAE 153
Query: 1419 ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
I VLD+ ++D + + K I + K++ +V I+ R
Sbjct: 154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+ GI LKV RG V + G G+GK++ LS I G ++ G + +G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 698 --AYVPQSPWILTG-NIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDLTE-IG 751
A VP+ I + EN+ G N+ D R +E F LF L E +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWI-----FSLFPR--LKERLK 134
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLY 811
+ G +SGG++Q + I RA+ + D+P + +++F + + I ++ + +
Sbjct: 135 QLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTIL 193
Query: 812 VTHQVEF--LPAADIILVMENGRIAQAGRFEELL 843
+ Q L A V+E G+I G+ ELL
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L GI +++ G + G G+GK++ L I I+ +G V + G V + P
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVEEP----H 84
Query: 710 NIRENILF-GNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSG--------- 759
+R+ I + + + + + +E V F +S ++ E+ ER ++G
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 144
Query: 760 -----GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTH 814
G +++ IARA+ + + +LD+P S +D ++ K + ++L +H
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
Query: 815 ---QVEFLPAADIILVMENGRIAQAGRFEEL 842
+VEFL D I ++ NG I + G EEL
Sbjct: 205 NMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 1306 IQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD 1365
++ I +++P+ G + + ++ + H++R + +P++ G R N+ +
Sbjct: 58 LRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEA----GAYR-NMQGIEYLRF 111
Query: 1366 KQVWEALDKCQLGDLV-RAKE-EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
+ A ++ ++V RA E L + + +S G + + R L+ + +LD
Sbjct: 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 171
Query: 1424 EATASVDSATDGVIQKIISQEFKD-RTVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSPT 1481
E T+ +D ++KI+ Q ++ T++ +H + V D + ++ +G I E +
Sbjct: 172 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 231
Query: 1482 KLLER-EDSFFSQLIKEYSMRSQNF 1505
+L ER + ++ +E S+NF
Sbjct: 232 ELKERYKAQNIEEVFEEVVKCSENF 256
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 21/229 (9%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
EV+++N W + + L++K G + + G G GK++ L I G + G
Sbjct: 6 EVKLIN---IWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQ 62
Query: 691 VKISGT-------KAYVPQSPWILTGNIRENILFGNQ--YDSCKYD---RTVEACALVKD 738
+ I +VP + + L+ + YD+ + R V + K
Sbjct: 63 IYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR 122
Query: 739 FELFASG-DLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
A LTE+ R +SGGQ+QR+ + RA+ + ++L D+P S +DA +
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXR 182
Query: 797 KDCLMGILKDKSV--LYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ L + + V +YVTH QVE D I V G + Q G +E+
Sbjct: 183 AE-LKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
Q DK+V E + L +L+ K +L S GQRQ LGR ++++ + +
Sbjct: 117 QEIDKRVREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFL 165
Query: 1422 LDEATASVDSATDGVIQ---KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYD 1478
DE +++D+ + K + ++ T+ ++ D + V + G + +
Sbjct: 166 XDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVG 225
Query: 1479 SPTKL 1483
+P ++
Sbjct: 226 TPDEV 230
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 36/216 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
+DG+ +VK G VA+ G G GK++ L + G + +G + + G
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78
Query: 710 ------------NIRENILFGNQYDSCKYD----RTVE-ACALVKDFELFASGDLTEIGE 752
+ ENI F + D R VE A L+ D +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID---------NLLDR 129
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-----MGILKDK 807
+ +SGGQ+QR+ +ARA+ + + L D+P S +DA+ + + +GI
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI---- 185
Query: 808 SVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ +YVTH Q E + A I V G++ Q G +E+
Sbjct: 186 TSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/141 (18%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ---K 1439
A++ +D+ + S GQ+Q L R L+K+ +L+ DE +++D+ +++ K
Sbjct: 118 ARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF-------- 1491
+ QE +V + + + + V + G++ +Y +P ++ + + F
Sbjct: 178 HLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNP 237
Query: 1492 -SQLIKEYSMRSQNFNSVAGR 1511
+ ++++S+ +N ++ R
Sbjct: 238 PTNFLRDFSVSVENKQTILKR 258
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 613 DEIQRDAVEYVPKGRS-----EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICG 667
DE ++ AV+ +P G + + ++ N +FS + L+ QL++KR + ICG
Sbjct: 410 DEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSL-AYGAKILLNKTQLRLKRARRYGICG 468
Query: 668 TVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYD 727
G GKS+L+ I +G P T + +I G D+ D
Sbjct: 469 PNGCGKSTLMRAI------------ANGQVDGFPTQEECRTVYVEHDI-DGTHSDTSVLD 515
Query: 728 RTVEACALVKDF---ELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDP 783
E+ K+ +L G E+ I+ +SGG K ++ +ARAV ++ADI LLD+P
Sbjct: 516 FVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575
Query: 784 FSAVD 788
+ +D
Sbjct: 576 TNHLD 580
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V+V N +F + P +S P + I + ++A+ G G+GKS+L++ + GE+ +G V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-----DKSVLY 811
+SGGQK ++ +A +Q + +LD+P + +D +D L + K + V+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--------RDSLGALSKALKEFEGGVII 953
Query: 812 VTHQVEFLPA-ADIILVMENGRIAQAGR 838
+TH EF + + +++GR+ +G
Sbjct: 954 ITHSAEFTKNLTEEVWAVKDGRMTPSGH 981
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
G+ +++SGGQ+QR+ IARA+ + D+ L D+P SA+D ++ + + K+++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 811 YVTHQVEFL-PAADIILVMENGRIAQAGRFEEL 842
VTH++ F + ++ + G+I + G E++
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIAHR 1456
+ S GQ+Q + R L + +L+ DE T+++D G + +I+ Q ++ +T+V + H
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Query: 1457 IHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
+ S V+ L G+I E P ++
Sbjct: 213 MGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 613 DEIQRDAVEYVPKGRS-----EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICG 667
DE ++ AV+ +P G + + ++ N +FS + L+ QL++KR + ICG
Sbjct: 404 DEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSL-AYGAKILLNKTQLRLKRARRYGICG 462
Query: 668 TVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYD 727
G GKS+L I +G P T + +I G D+ D
Sbjct: 463 PNGCGKSTLXRAIA------------NGQVDGFPTQEECRTVYVEHDI-DGTHSDTSVLD 509
Query: 728 RTVEACALVKDF---ELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDP 783
E+ K+ +L G E I+ +SGG K ++ +ARAV ++ADI LLD+P
Sbjct: 510 FVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEP 569
Query: 784 FSAVD 788
+ +D
Sbjct: 570 TNHLD 574
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V+V N +F + P +S P + I + ++A+ G G+GKS+L++ + GE+ +G V
Sbjct: 666 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-----DKSVLY 811
+SGGQK ++ +A +Q + +LD+P + +D +D L + K + V+
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--------RDSLGALSKALKEFEGGVII 947
Query: 812 VTHQVEFLPA-ADIILVMENGRIAQAGR 838
+TH EF + + +++GR +G
Sbjct: 948 ITHSAEFTKNLTEEVWAVKDGRXTPSGH 975
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 613 DEIQRDAVEYVPKGRS-----EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICG 667
DE ++ AV+ +P G + + ++ N +FS + L+ QL++KR + ICG
Sbjct: 410 DEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSL-AYGAKILLNKTQLRLKRARRYGICG 468
Query: 668 TVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYD 727
G GKS+L I +G P T + +I G D+ D
Sbjct: 469 PNGCGKSTLXRAIA------------NGQVDGFPTQEECRTVYVEHDI-DGTHSDTSVLD 515
Query: 728 RTVEACALVKDF---ELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDP 783
E+ K+ +L G E I+ +SGG K ++ +ARAV ++ADI LLD+P
Sbjct: 516 FVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEP 575
Query: 784 FSAVD 788
+ +D
Sbjct: 576 TNHLD 580
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V+V N +F + P +S P + I + ++A+ G G+GKS+L++ + GE+ +G V
Sbjct: 672 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-----DKSVLY 811
+SGGQK ++ +A +Q + +LD+P + +D +D L + K + V+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--------RDSLGALSKALKEFEGGVII 953
Query: 812 VTHQVEFLPA-ADIILVMENGRIAQAGR 838
+TH EF + + +++GR +G
Sbjct: 954 ITHSAEFTKNLTEEVWAVKDGRXTPSGH 981
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------T 696
++ + L + G VAI G G+GKS+LL + G + G + G T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 697 KAYVPQ-SPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
+A + Q S ++ E I G DR ++ A D + +R
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ-------QVMAQTDCLALAQRDY 139
Query: 756 N-MSGGQKQRIQIARAVYQ------DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK- 807
+SGG++QR+Q+AR + Q LD+P SA+D + + L + + +
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEP 198
Query: 808 -SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
+V V H + AD I+++ G++ G EE+L
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 750 IGERGINMSGGQKQRIQIA---RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+G+ +SGG+ QRI++A R + +Y+LD+P + + +L + + +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 807 KSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHS 857
+V+ V H+++ + A+D +L + G GR L+ Q EV A S
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR---LVAQGTPAEVAQAAGS 831
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILT 708
+L+ I L+V G KV I G GSGK++LL I G + +G + I+G + ++ +
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYS 77
Query: 709 GNIRENILFGNQYDSCKYDRTVEACALVKDF--ELFASGDL-TEIGERGI-NMSGGQKQR 764
N+ E G + Y E L +D E+ + L EI R + +S GQ
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVL 136
Query: 765 IQIARAVYQDADIYLLDDPFSAVDA---HTGTQLFKDCLMGILKDKSVLYVTHQVEFL 819
++ + A+ +I LD+PF VDA H ++ K+ K + VTH+++ L
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE------YGKEGILVTHELDML 188
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVD--AHTGTQLFKDCLMGILKDKSVLYVTH 814
+S G+KQR+ IARA+ + +LD+P + +D A D L + +YVTH
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 815 QVEFLPAA-DIILVMENGRIAQAGRFEELL 843
+E + A IL++++G+ Q G E++L
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 747 LTEIGERG--------INM-----------SGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
LT+I ERG +NM SGG QR+ +A ++ ++AD+Y+ D P S +
Sbjct: 110 LTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYL 169
Query: 788 DAHTGTQLFKDCLMGILKDKSVLYVTHQV 816
D + K + +LK+K V+ V H +
Sbjct: 170 DVRERMNMAK-AIRELLKNKYVIVVDHDL 197
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-KAYVPQSPWILTGNIREN 714
+ K G + I G G GK++ ++GEI G+V +Y PQ
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR----------- 338
Query: 715 ILFGNQYDSC--KYDRTVEACALVKDF----ELFASGDLTEIGERGIN-MSGGQKQRIQI 767
+F N YD +Y AL E+ +L + E +N +SGG+ Q++ I
Sbjct: 339 -IFPN-YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYI 396
Query: 768 ARAVYQDADIYLLDDPFSAVDAH 790
A + ++AD+Y+LD P S +D
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVE 419
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVT 813
+ +SGG KQR+ IA A+ D + +LD+P SA+D T + + K ++++VT
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 814 HQVEFLPA-ADIILVMENGRIAQ 835
H + AD + V+ G + +
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 135/333 (40%), Gaps = 77/333 (23%)
Query: 544 IFWGSPTFISVVTFGACMLLGIQL-TAGRVLSALATFRM--LQDPIFNLPDLLSNIAQGK 600
I +G P+ VVT A + GI + G + + FR LQ F + D ++
Sbjct: 293 IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQ---FRIADATEDLQND- 348
Query: 601 VSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRG 660
SA R +Y + K + +F + V G+FS S L
Sbjct: 349 -SASRAFSY-----------PSLKKTQGDFVLNVEEGEFS-----DSEIL---------- 381
Query: 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQ--SPWILTGNIRENILFG 718
+ G G+GK++L+ + G ++ G + PQ +P G +R+ + F
Sbjct: 382 ---VMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK-FPGTVRQ-LFFK 436
Query: 719 N---QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775
Q+ + ++ V + D I + ++SGG+ QR+ I A+ A
Sbjct: 437 KIRGQFLNPQFQTDVVKPLRIDDI----------IDQEVQHLSGGELQRVAIVLALGIPA 486
Query: 776 DIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA---ADIILVMENGR 832
DIYL+D+P + +D+ K IL +K ++ +F+ A AD ++V
Sbjct: 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH-DFIMATYLADKVIV----- 540
Query: 833 IAQAGRFEELLKQNIGFEVLVGAHSQALESVLT 865
FE + +N AH++A ES+LT
Sbjct: 541 ------FEGIPSKN--------AHARAPESLLT 559
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH---TGTQLFKDCLMGILKDKSVLYVT 813
+SGG+ QR I + Q+AD+Y+ D+P S +D Q+ + L K V+ V
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT---KYVICVE 278
Query: 814 HQVEFL 819
H + L
Sbjct: 279 HDLSVL 284
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 198 LFGISIQGKTGLLLHTASSDTTE-----PFLNVKADKQFKSKRDSPYGKSTLLQL----V 248
+ G + GKT L+ A + + P LNV K ++ +P T+ QL +
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEGQDIPKLNV----SMKPQKIAPKFPGTVRQLFFKKI 438
Query: 249 TFSWLNPLFAVGIKKPLELDDIPDVDIK 276
+LNP F + KPL +DDI D +++
Sbjct: 439 RGQFLNPQFQTDVVKPLRIDDIIDQEVQ 466
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTKAYVPQSPWIL 707
L G+ L V G AI G GSGKS+L + + G + + GTV+ G K + SP
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLALSPEDR 75
Query: 708 TGNIRENILFGNQY--------DSCKYDRTVEACALVKDFELFASGDLTEIGE------- 752
G E I QY + + A + E D ++ E
Sbjct: 76 AG---EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 753 -------RGINM--SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
R +N+ SGG+K+R I + + ++ +LD+ S +D ++ D + +
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA-LKVVADGVNSL 191
Query: 804 LKDK-SVLYVTHQVEFLP--AADIILVMENGRIAQAGRFEELLKQ 845
K S + VTH L D + V+ GRI ++G F L+KQ
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF-TLVKQ 235
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTKAYVPQSPWIL 707
L G+ L V G AI G GSGKS+L + + G + + GTV+ G K + SP
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLALSPEDR 94
Query: 708 TGNIRENILFGNQY--------DSCKYDRTVEACALVKDFELFASGDLTEIGE------- 752
G E I QY + + A + E D ++ E
Sbjct: 95 AG---EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 753 -------RGINM--SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
R +N+ SGG+K+R I + + ++ +LD+ S +D ++ D + +
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA-LKVVADGVNSL 210
Query: 804 LKDK-SVLYVTHQVEFLP--AADIILVMENGRIAQAGRFEELLKQ 845
K S + VTH L D + V+ GRI ++G F L+KQ
Sbjct: 211 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF-TLVKQ 254
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDAD---IYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
++G+ +SGG+ QR+++A +++ ++ +Y+LD+P + + +L D L ++
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVD 896
Query: 806 D-KSVLYVTHQVEFLPAADIILVM------ENGRIAQAGRFEEL 842
+ +VL + H ++ + AD I+ + G+I G EE+
Sbjct: 897 NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDAD---IYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
++G+ +SGG+ QR+++A +++ ++ +Y+LD+P + + +L D L ++
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVD 594
Query: 806 D-KSVLYVTHQVEFLPAADIILVM------ENGRIAQAGRFEEL 842
+ +VL + H ++ + AD I+ + G+I G EE+
Sbjct: 595 NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDAD---IYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
++G+ +SGG+ QR+++A +++ ++ +Y+LD+P + + +L D L ++
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVD 896
Query: 806 D-KSVLYVTHQVEFLPAADIILVM------ENGRIAQAGRFEEL 842
+ +VL + H ++ + AD I+ + G+I G EE+
Sbjct: 897 NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KAYVPQ 702
+V+ G + + G G+GKS+LL+ G G+++ +G +AY+ Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAGXTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 703 SPWILTGNIRENILFGNQYDSCKYDRTVE-ACALVKDFELFASGDLTEIGERGINMSGGQ 761
+ L +Q+D + + + A AL D +L S + +SGG+
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN---------QLSGGE 131
Query: 762 KQRIQIARAVYQ-------DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYV-- 812
QR+++A V Q + LLD+P +++D + L D ++ L + + V
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALSQQGLAIVXS 189
Query: 813 THQVEF-LPAADIILVMENGRIAQAGRFEELL 843
+H + L A +++ G+ +GR EE+L
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KAYVPQ 702
+V+ G + + G G+GKS+LL+ G G+++ +G +AY+ Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAGXTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 703 SPWILTGNIRENILFGNQYDSCKYDRTVE-ACALVKDFELFASGDLTEIGERGINMSGGQ 761
+ L +Q+D + + + A AL D +L S + +SGG+
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN---------QLSGGE 131
Query: 762 KQRIQIARAVYQ-------DADIYLLDDPFSAVDAHTGTQLFKD----CLMGILKDKSVL 810
QR+++A V Q + LLD+P +++D + L K C G+ +++
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGL----AIV 187
Query: 811 YVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843
+H + L A +++ G+ +GR EE+L
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 36/223 (16%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------- 696
+ S L + +V+ G + + G G+GKS+LL+ + G + G+++ +G
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 69
Query: 697 -----KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE-ACALVKDFELFASGDLTEI 750
+AY+ Q + L +Q+D + + + A AL D ++
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---------DKL 120
Query: 751 GERGINMSGGQKQRIQIARAVYQ-------DADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
G +SGG+ QR+++A V Q + LLD P +++D + L D ++
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKILSA 178
Query: 804 LKDK--SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843
L + +++ +H + L A +++ G++ +GR EE+L
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 749 EIGERGINMSGGQKQRIQIA---RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
++G+ +SGG+ QRI++A R +Y+LD+P + +L + + +
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 806 DKSVLYVTHQVEFLPAADIILVM------ENGRIAQAGRFEELLKQ 845
+V+ + H ++ + AD I+ + E G I G EE+ K
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 757 MSGGQKQRIQIARAVYQD--ADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYV 812
+SGG+ QRI++A + IY+LD+P + +L K + L+D +V+ V
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK--TLKKLRDLGNTVIVV 522
Query: 813 THQVEFLPAADIIL------VMENGRIAQAGRFEELLKQ 845
H E + AD I+ GR+ G +ELLK
Sbjct: 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 757 MSGGQKQRIQIARAVYQD--ADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYV 812
+SGG+ QRI++A + +Y+LD+P + +L + + L+D +++ V
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE--TLTRLRDLGNTLIVV 579
Query: 813 THQVEFLPAADIILVM------ENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESV 863
H + + AD I+ + GRI +G ++ELL+ + + GA+ ES+
Sbjct: 580 EHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNK---DSITGAYLSGRESI 633
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 750 IGERGINMSGGQKQRIQIARAVYQDA---DIYLLDDPFSAVDAHTGTQLFKDCLMGIL-K 805
+G+ +SGG+ QR+++A + + + +Y+LD+P + + +L + + G++ K
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDK 915
Query: 806 DKSVLYVTHQVEFLPAADIIL 826
+V+ + H ++ + +D I+
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 36/223 (16%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------- 696
+ S L + +V+ G + + G G+GKS+LL+ + G + G+++ +G
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 69
Query: 697 -----KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE-ACALVKDFELFASGDLTEI 750
+AY+ Q + L +Q+D + + + A AL D ++
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---------DKL 120
Query: 751 GERGINMSGGQKQRIQIARAVYQ-------DADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
G +SGG+ QR+++A V Q + LLD P ++D + L D ++
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSAL--DKILSA 178
Query: 804 LKDK--SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843
L + +++ +H + L A +++ G++ +GR EE+L
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVV 1451
G+T L++++ LVLDEA +D + I+KI+ Q DR +
Sbjct: 184 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 225
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
G+T L++++ LVLDEA +D + I+KI+ Q DR
Sbjct: 170 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 208
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENIL 716
V G+ I G +GKS+LL+ +LG+ +A V P I E +
Sbjct: 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQ------------ERAIVSHMPGTTRDYIEECFI 277
Query: 717 FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776
+D+T+ F L + L E GE I G ++ R+++A A D
Sbjct: 278 ---------HDKTM--------FRLTDTAGLREAGEE-IEHEGIRRSRMKMAEA---DLI 316
Query: 777 IYLLD 781
+YLLD
Sbjct: 317 LYLLD 321
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGE----IQKMAGTVK 692
++ GMKV I G +GKSSLL+ + G + +AGT +
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 43
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 577 ATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKG---RSEFEVE 633
A+F+ + P L SN+A G+ ++ DE ++ K S FE +
Sbjct: 89 ASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQ 148
Query: 634 VVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI 693
++ S DGI + G V +CG GSGK++ + I+ I K + I
Sbjct: 149 GFYNLLDNKEQAISAIKDGIAI----GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204
Query: 694 SGTKAYV 700
T+ V
Sbjct: 205 EDTEEIV 211
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 660 GMKVAICGTVGSGKSSLLSCILGE----IQKMAGTVK 692
GMKV I G +GKSSLL+ + G + +AGT +
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,963,944
Number of Sequences: 62578
Number of extensions: 1546236
Number of successful extensions: 3898
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3522
Number of HSP's gapped (non-prelim): 265
length of query: 1513
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1402
effective length of database: 8,027,179
effective search space: 11254104958
effective search space used: 11254104958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)