Query 000433
Match_columns 1513
No_of_seqs 962 out of 4614
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 6.7E-40 1.5E-44 389.5 17.1 253 1225-1513 53-323 (364)
2 KOG1141 Predicted histone meth 100.0 3.1E-36 6.8E-41 358.7 5.5 240 1158-1420 567-840 (1262)
3 KOG4442 Clathrin coat binding 100.0 7.5E-33 1.6E-37 332.1 11.3 142 1354-1512 93-239 (729)
4 KOG1079 Transcriptional repres 99.9 7.4E-28 1.6E-32 287.4 9.6 164 1296-1512 536-711 (739)
5 KOG1080 Histone H3 (Lys4) meth 99.9 7.1E-23 1.5E-27 261.9 8.9 118 1378-1512 865-985 (1005)
6 KOG2462 C2H2-type Zn-finger pr 99.9 1.6E-22 3.5E-27 223.4 4.6 138 880-1069 129-266 (279)
7 KOG2462 C2H2-type Zn-finger pr 99.8 6.1E-22 1.3E-26 218.8 5.4 140 843-1040 126-265 (279)
8 KOG1074 Transcriptional repres 99.8 1.5E-21 3.3E-26 237.5 7.6 214 847-1070 605-931 (958)
9 KOG1083 Putative transcription 99.8 1.1E-21 2.3E-26 241.8 1.7 129 1367-1512 1165-1296(1306)
10 smart00317 SET SET (Su(var)3-9 99.8 3.7E-20 8.1E-25 183.3 11.7 113 1380-1509 1-116 (116)
11 KOG3608 Zn finger proteins [Ge 99.8 2E-19 4.3E-24 201.7 5.6 183 852-1066 184-372 (467)
12 KOG3608 Zn finger proteins [Ge 99.8 4.8E-19 1E-23 198.6 5.3 207 754-1057 181-397 (467)
13 KOG3623 Homeobox transcription 99.7 1.9E-18 4.1E-23 206.9 4.5 81 983-1070 893-973 (1007)
14 KOG1085 Predicted methyltransf 99.7 3.4E-17 7.3E-22 179.8 9.2 122 1375-1510 252-377 (392)
15 PF05033 Pre-SET: Pre-SET moti 99.7 2.7E-17 5.8E-22 162.6 7.3 102 1236-1371 1-103 (103)
16 KOG1074 Transcriptional repres 99.7 1.6E-17 3.4E-22 203.0 6.0 212 847-1070 353-692 (958)
17 smart00468 PreSET N-terminal t 99.6 4.6E-16 1E-20 152.7 8.3 96 1234-1363 1-98 (98)
18 COG2940 Proteins containing SE 99.4 8E-14 1.7E-18 172.7 2.0 144 1355-1513 308-452 (480)
19 KOG3576 Ovo and related transc 99.3 1.6E-13 3.4E-18 145.3 0.4 84 845-940 115-198 (267)
20 KOG3576 Ovo and related transc 99.3 6.4E-13 1.4E-17 140.7 1.6 117 880-1046 116-240 (267)
21 KOG3623 Homeobox transcription 99.2 2.9E-12 6.4E-17 154.7 1.4 123 882-1042 211-333 (1007)
22 PF00856 SET: SET domain; Int 99.0 8.9E-11 1.9E-15 121.6 3.5 117 1390-1510 1-162 (162)
23 PLN03086 PRLI-interacting fact 98.8 4.3E-09 9.2E-14 130.1 7.0 57 974-1038 494-560 (567)
24 PLN03086 PRLI-interacting fact 98.7 2E-08 4.2E-13 124.4 7.7 91 963-1066 460-560 (567)
25 PHA00733 hypothetical protein 98.6 2.5E-08 5.4E-13 102.9 4.1 86 914-1043 39-124 (128)
26 KOG1141 Predicted histone meth 98.5 1E-07 2.2E-12 117.1 7.1 262 1228-1512 871-1239(1262)
27 PHA00733 hypothetical protein 98.5 9E-08 2E-12 98.8 3.8 93 835-940 28-124 (128)
28 KOG3993 Transcription factor ( 98.5 4.6E-08 1E-12 113.9 1.2 181 847-1042 267-483 (500)
29 KOG1081 Transcription factor N 98.3 2.1E-07 4.6E-12 114.5 0.9 126 1354-1512 288-417 (463)
30 PHA02768 hypothetical protein; 98.1 6.3E-07 1.4E-11 78.5 0.3 42 985-1034 6-47 (55)
31 KOG3993 Transcription factor ( 98.1 1.4E-06 3E-11 102.0 2.9 171 881-1068 267-480 (500)
32 PHA02768 hypothetical protein; 98.0 2.3E-06 5.1E-11 74.9 2.4 45 1018-1064 5-49 (55)
33 KOG2589 Histone tail methylase 97.8 1E-05 2.3E-10 93.4 3.1 103 1388-1513 136-240 (453)
34 PF13465 zf-H2C2_2: Zinc-finge 97.7 1.7E-05 3.6E-10 59.6 1.7 24 972-995 2-25 (26)
35 KOG2461 Transcription factor B 97.7 3.2E-05 7E-10 93.6 4.9 112 1377-1513 26-146 (396)
36 PHA00732 hypothetical protein 97.3 0.00013 2.9E-09 69.3 3.2 47 984-1042 1-48 (79)
37 PHA00616 hypothetical protein 97.3 5.5E-05 1.2E-09 63.5 0.1 33 1018-1050 1-33 (44)
38 PF13465 zf-H2C2_2: Zinc-finge 97.3 0.00015 3.2E-09 54.6 2.1 25 999-1029 1-25 (26)
39 PHA00732 hypothetical protein 97.2 0.00022 4.8E-09 67.8 2.4 46 1018-1069 1-47 (79)
40 PF05605 zf-Di19: Drought indu 97.0 0.00047 1E-08 60.9 3.0 53 984-1043 2-54 (54)
41 PF05605 zf-Di19: Drought indu 97.0 0.00058 1.2E-08 60.3 3.2 52 847-905 2-53 (54)
42 PHA00616 hypothetical protein 96.9 0.00041 8.9E-09 58.4 1.1 34 984-1023 1-34 (44)
43 COG5189 SFP1 Putative transcri 96.6 0.0011 2.3E-08 75.8 2.5 57 982-1038 347-418 (423)
44 PF12756 zf-C2H2_2: C2H2 type 95.9 0.0035 7.6E-08 60.9 1.4 73 849-938 1-73 (100)
45 COG5189 SFP1 Putative transcri 95.8 0.0038 8.2E-08 71.5 1.4 69 845-934 347-417 (423)
46 PF00096 zf-C2H2: Zinc finger, 95.7 0.0028 6.1E-08 45.8 0.2 18 985-1002 1-18 (23)
47 PF12756 zf-C2H2_2: C2H2 type 95.6 0.0063 1.4E-07 59.1 2.2 72 917-1007 1-72 (100)
48 PF00096 zf-C2H2: Zinc finger, 95.5 0.0072 1.6E-07 43.7 1.6 23 1019-1041 1-23 (23)
49 PF13912 zf-C2H2_6: C2H2-type 94.8 0.012 2.7E-07 44.2 1.1 24 1019-1042 2-25 (27)
50 PF13894 zf-C2H2_4: C2H2-type 94.8 0.015 3.2E-07 41.8 1.4 22 883-904 2-23 (24)
51 PF13894 zf-C2H2_4: C2H2-type 94.7 0.01 2.2E-07 42.7 0.4 18 985-1002 1-18 (24)
52 KOG2231 Predicted E3 ubiquitin 94.5 0.041 8.9E-07 70.2 5.3 80 849-939 117-206 (669)
53 PF13912 zf-C2H2_6: C2H2-type 94.3 0.022 4.7E-07 42.9 1.3 24 882-905 2-25 (27)
54 KOG2231 Predicted E3 ubiquitin 94.3 0.041 8.9E-07 70.2 4.5 26 880-906 114-139 (669)
55 cd01395 HMT_MBD Methyl-CpG bin 93.2 0.02 4.3E-07 51.8 -0.7 37 1184-1220 1-49 (60)
56 KOG1146 Homeobox protein [Gene 93.0 0.037 8E-07 74.0 1.2 178 849-1041 438-641 (1406)
57 PF09237 GAGA: GAGA factor; I 92.9 0.04 8.6E-07 47.8 0.7 31 1016-1046 22-52 (54)
58 KOG1146 Homeobox protein [Gene 92.7 0.062 1.3E-06 72.0 2.5 160 883-1069 438-641 (1406)
59 COG5048 FOG: Zn-finger [Genera 92.2 0.12 2.6E-06 62.3 4.0 62 990-1055 394-455 (467)
60 smart00355 ZnF_C2H2 zinc finge 91.5 0.082 1.8E-06 38.3 0.9 23 985-1008 1-23 (26)
61 PRK04860 hypothetical protein; 91.1 0.12 2.7E-06 55.8 2.1 39 983-1031 118-156 (160)
62 smart00355 ZnF_C2H2 zinc finge 91.0 0.15 3.2E-06 37.0 1.9 24 1019-1042 1-24 (26)
63 PRK04860 hypothetical protein; 90.9 0.084 1.8E-06 57.0 0.7 39 1017-1059 118-156 (160)
64 cd05162 PWWP The PWWP domain, 89.8 0.3 6.6E-06 47.2 3.4 60 157-220 6-66 (87)
65 COG5048 FOG: Zn-finger [Genera 89.6 0.23 4.9E-06 59.9 3.0 167 846-1035 288-462 (467)
66 COG5236 Uncharacterized conser 89.4 0.18 3.9E-06 58.8 1.7 126 916-1067 152-302 (493)
67 cd05840 SPBC215_ISWI_like The 88.4 0.34 7.4E-06 47.8 2.7 59 157-216 6-65 (93)
68 KOG2785 C2H2-type Zn-finger pr 88.1 0.34 7.4E-06 57.9 2.9 53 1016-1068 164-242 (390)
69 PF09237 GAGA: GAGA factor; I 87.7 0.28 6E-06 42.8 1.4 29 880-908 23-51 (54)
70 PF12874 zf-met: Zinc-finger o 86.9 0.24 5.3E-06 36.5 0.5 22 1019-1040 1-22 (25)
71 PF13909 zf-H2C2_5: C2H2-type 86.8 0.21 4.6E-06 36.6 0.2 23 1019-1042 1-23 (24)
72 PF12874 zf-met: Zinc-finger o 86.5 0.27 5.9E-06 36.2 0.6 21 883-903 2-22 (25)
73 PF12171 zf-C2H2_jaz: Zinc-fin 85.0 0.55 1.2E-05 35.6 1.6 22 1019-1040 2-23 (27)
74 smart00570 AWS associated with 84.5 0.42 9.1E-06 42.1 0.9 25 1353-1377 26-50 (51)
75 PF13909 zf-H2C2_5: C2H2-type 84.3 0.5 1.1E-05 34.6 1.1 23 882-905 1-23 (24)
76 COG5236 Uncharacterized conser 83.8 0.81 1.8E-05 53.7 3.0 74 848-941 221-307 (493)
77 KOG4173 Alpha-SNAP protein [In 83.3 0.5 1.1E-05 52.0 1.1 91 880-1010 78-172 (253)
78 PF11722 zf-TRM13_CCCH: CCCH z 82.7 0.41 8.8E-06 37.9 0.1 29 533-561 2-30 (31)
79 PF12171 zf-C2H2_jaz: Zinc-fin 81.7 0.78 1.7E-05 34.7 1.3 22 882-903 2-23 (27)
80 KOG2785 C2H2-type Zn-finger pr 81.3 2.1 4.6E-05 51.5 5.2 57 983-1040 165-242 (390)
81 KOG2482 Predicted C2H2-type Zn 79.1 1.5 3.2E-05 51.7 3.0 19 1020-1038 336-354 (423)
82 KOG4173 Alpha-SNAP protein [In 78.3 0.69 1.5E-05 50.9 0.1 86 846-940 78-171 (253)
83 KOG2482 Predicted C2H2-type Zn 71.7 4.4 9.6E-05 48.0 4.3 51 1019-1069 280-357 (423)
84 KOG2893 Zn finger protein [Gen 69.7 2 4.3E-05 48.3 1.0 47 986-1042 12-59 (341)
85 cd05837 MSH6_like The PWWP dom 65.3 6.7 0.00014 40.0 3.6 63 157-219 8-71 (110)
86 PF13913 zf-C2HC_2: zinc-finge 60.6 5.6 0.00012 30.0 1.6 19 883-902 4-22 (25)
87 smart00451 ZnF_U1 U1-like zinc 60.4 3.8 8.3E-05 32.5 0.7 25 881-905 3-27 (35)
88 KOG2893 Zn finger protein [Gen 59.8 3.8 8.2E-05 46.2 0.8 47 884-940 13-59 (341)
89 smart00451 ZnF_U1 U1-like zinc 57.4 4.7 0.0001 32.0 0.8 22 1018-1039 3-24 (35)
90 KOG1280 Uncharacterized conser 55.6 8.4 0.00018 46.0 2.7 29 880-908 78-106 (381)
91 PF13913 zf-C2HC_2: zinc-finge 54.2 8.7 0.00019 29.0 1.7 17 985-1002 3-19 (25)
92 TIGR00622 ssl1 transcription f 48.7 27 0.00059 35.9 4.7 83 847-940 15-105 (112)
93 smart00391 MBD Methyl-CpG bind 47.8 6.4 0.00014 37.7 0.2 26 1194-1219 26-52 (77)
94 COG4049 Uncharacterized protei 43.3 11 0.00024 33.7 0.9 33 978-1010 11-43 (65)
95 PF06524 NOA36: NOA36 protein; 41.8 10 0.00022 43.7 0.5 27 1016-1042 207-233 (314)
96 KOG3813 Uncharacterized conser 41.3 13 0.00027 46.4 1.3 19 1299-1318 307-325 (640)
97 TIGR00622 ssl1 transcription f 40.6 45 0.00097 34.4 4.8 49 986-1042 57-105 (112)
98 smart00293 PWWP domain with co 40.5 30 0.00065 31.6 3.3 56 157-215 6-62 (63)
99 PF00855 PWWP: PWWP domain; I 38.7 30 0.00066 32.9 3.2 56 157-219 6-62 (86)
100 cd00350 rubredoxin_like Rubred 36.0 23 0.0005 28.4 1.6 10 985-994 2-11 (33)
101 COG4049 Uncharacterized protei 35.7 14 0.0003 33.1 0.3 32 841-872 11-42 (65)
102 cd05838 WHSC1_related The PWWP 35.7 28 0.00062 34.6 2.6 54 158-214 7-61 (95)
103 PF09986 DUF2225: Uncharacteri 33.9 15 0.00032 41.8 0.3 49 880-928 4-61 (214)
104 PF12013 DUF3505: Protein of u 33.8 51 0.0011 33.3 4.1 26 1018-1043 80-109 (109)
105 TIGR02098 MJ0042_CXXC MJ0042 f 33.1 22 0.00048 29.0 1.1 34 985-1029 3-36 (38)
106 TIGR00373 conserved hypothetic 32.8 33 0.00072 37.2 2.7 38 976-1028 101-138 (158)
107 PF09986 DUF2225: Uncharacteri 32.5 23 0.0005 40.3 1.6 41 1017-1057 4-59 (214)
108 smart00531 TFIIE Transcription 31.4 39 0.00085 36.2 3.0 39 980-1028 95-133 (147)
109 KOG2084 Predicted histone tail 31.1 45 0.00097 41.5 3.9 33 1466-1506 208-241 (482)
110 KOG2461 Transcription factor B 30.5 68 0.0015 40.0 5.1 81 968-1054 315-395 (396)
111 COG1997 RPL43A Ribosomal prote 30.1 21 0.00045 35.0 0.6 33 983-1031 34-66 (89)
112 KOG4377 Zn-finger protein [Gen 28.6 58 0.0013 40.0 3.9 110 851-967 277-396 (480)
113 cd05839 BR140_related The PWWP 28.3 87 0.0019 32.3 4.6 61 157-217 6-80 (111)
114 PRK06266 transcription initiat 28.3 40 0.00086 37.4 2.4 33 981-1028 114-146 (178)
115 smart00834 CxxC_CXXC_SSSS Puta 27.6 20 0.00044 29.4 0.0 12 985-996 6-17 (41)
116 PF12013 DUF3505: Protein of u 27.4 45 0.00098 33.7 2.5 24 916-939 81-108 (109)
117 KOG2186 Cell growth-regulating 26.6 31 0.00068 39.8 1.2 46 848-902 4-49 (276)
118 KOG2186 Cell growth-regulating 26.3 35 0.00076 39.5 1.6 47 881-936 3-49 (276)
119 PF09723 Zn-ribbon_8: Zinc rib 25.7 21 0.00045 30.2 -0.2 12 985-996 6-17 (42)
120 PF02892 zf-BED: BED zinc fing 25.5 52 0.0011 27.7 2.1 28 981-1008 13-44 (45)
121 PF11722 zf-TRM13_CCCH: CCCH z 25.4 38 0.00082 27.1 1.2 20 590-609 12-31 (31)
122 PF13891 zf-C3Hc3H: Potential 25.2 24 0.00052 32.7 0.0 35 587-622 3-37 (65)
123 KOG1337 N-methyltransferase [G 25.1 46 0.001 42.3 2.5 38 1466-1510 239-277 (472)
124 PF14353 CpXC: CpXC protein 24.4 45 0.00096 34.7 1.8 49 986-1041 3-61 (128)
125 KOG2593 Transcription initiati 24.0 43 0.00093 41.5 1.8 44 769-814 117-160 (436)
126 PF09538 FYDLN_acid: Protein o 24.0 41 0.0009 34.4 1.4 14 1018-1031 26-39 (108)
127 TIGR02605 CxxC_CxxC_SSSS putat 24.0 27 0.00058 30.5 0.1 11 985-995 6-16 (52)
128 TIGR00373 conserved hypothetic 23.9 54 0.0012 35.6 2.4 38 839-891 101-138 (158)
129 smart00531 TFIIE Transcription 22.8 69 0.0015 34.3 2.9 39 843-891 95-133 (147)
130 COG1996 RPC10 DNA-directed RNA 22.6 44 0.00096 29.5 1.1 29 983-1027 5-33 (49)
131 cd00122 MBD MeCP2, MBD1, MBD2, 21.9 27 0.00059 31.9 -0.3 27 1194-1220 23-50 (62)
132 PRK00464 nrdR transcriptional 21.9 34 0.00073 37.2 0.4 40 848-893 1-40 (154)
133 cd05834 HDGF_related The PWWP 21.7 1.1E+02 0.0024 29.7 3.9 52 157-218 8-60 (83)
134 PF09538 FYDLN_acid: Protein o 21.5 45 0.00098 34.2 1.2 14 915-928 26-39 (108)
135 PHA00626 hypothetical protein 21.1 34 0.00073 30.9 0.1 13 1018-1030 23-35 (59)
136 PRK06266 transcription initiat 20.6 66 0.0014 35.7 2.3 36 842-892 112-147 (178)
137 KOG2593 Transcription initiati 20.2 65 0.0014 40.1 2.3 43 976-1027 120-162 (436)
138 cd00729 rubredoxin_SM Rubredox 20.2 59 0.0013 26.4 1.3 9 847-855 18-26 (34)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.7e-40 Score=389.48 Aligned_cols=253 Identities=31% Similarity=0.473 Sum_probs=198.9
Q ss_pred CccCCCceeeecCCCCcCCCCeeeeeCCCCcccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCccc
Q 000433 1225 KPLLRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCAC 1304 (1513)
Q Consensus 1225 ~~~~~~~~~~~DIS~G~E~vPV~~vnd~D~~~sl~~~g~~~~~~~~~~~~P~~~F~Yit~~~~~~~~~~d~~~~~~GC~C 1304 (1513)
..+.+......||+.|.|++||+.+|++|.. .| ..|+|++..++..+. ........||.|
T Consensus 53 ~~~~~~~~~~~d~~~~~e~~~v~~~n~id~~------------------~~-~~f~y~~~~~~~~~~-~~~~~~~~~c~C 112 (364)
T KOG1082|consen 53 KDKLEAKSELEDIALGSENLPVPLVNRIDED------------------AP-LYFQYIATEIVDPGE-LSDCENSTGCRC 112 (364)
T ss_pred ccccccccccccccCccccCceeeeeeccCC------------------cc-ccceeccccccCccc-cccCccccCCCc
Confidence 4456677889999999999999999999863 12 579999999888852 222345689999
Q ss_pred CCCCCCCCC---CCccccccccccccccccCCCcCCCcccCCCCc--eeecCCceeeecCCCCCCCCCCCCcccccccee
Q 000433 1305 ANSTCFPET---CDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGR--VILEEGYLIYECNHMCSCDRTCPNRVLQNGVRV 1379 (1513)
Q Consensus 1305 ~~g~C~~~~---C~C~~l~~~~y~~~~~~~g~~~~~~~~Y~~~G~--l~~~~~~~IyECn~~C~C~~~C~NRvvQ~g~~~ 1379 (1513)
.+ .|.... |.|... +++.++|..+|. .....+.+||||+..|+|+++|.|||+|.|++.
T Consensus 113 ~~-~~~~~~~~~C~C~~~---------------n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~ 176 (364)
T KOG1082|consen 113 CS-SCSSVLPLTCLCERH---------------NGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQF 176 (364)
T ss_pred cC-CCCCCCCccccChHh---------------hCCccccccCCccccccccCccccccccCCCCCCcCcchhhcccccc
Confidence 86 344322 777532 235677777763 234556799999999999999999999999999
Q ss_pred eEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCC----CCCceeEeecccccc--------ccccc
Q 000433 1380 KLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGR----DGCGYMLNIGAHIND--------MGRLI 1447 (1513)
Q Consensus 1380 ~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~----~~~~Ylf~l~~~~~~--------~~~~~ 1447 (1513)
+|+||+|+.+|||||++++|++|+|||||+||+++..++++|...+.. .+..+.+..+..... .....
T Consensus 177 ~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (364)
T KOG1082|consen 177 HLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPG 256 (364)
T ss_pred ceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999999999987543221 111223322221100 00011
Q ss_pred cCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCCC
Q 000433 1448 EGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLSL 1513 (1513)
Q Consensus 1448 ~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s~ 1513 (1513)
.....++|||+.+||++|||||||.||+.++.|+.++.++..+||+|||+++|+||||| |||+.+|
T Consensus 257 ~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 257 GPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred CCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 22468999999999999999999999999999999999999999999999999999999 9999764
No 2
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-36 Score=358.72 Aligned_cols=240 Identities=22% Similarity=0.277 Sum_probs=170.9
Q ss_pred ccccceecccccCCCccCCCC--CCCCCCCC-CCcccc-----------CcccccccCCCcCCc-cccccceee-eccc-
Q 000433 1158 IQVEWHREGFLCSNGCKIFKD--PHLPPHLE-PLPSVS-----------AGIRSSDSSDFVNNQ-WEVDECHCI-IDSR- 1220 (1513)
Q Consensus 1158 iq~~wh~~~~~C~~g~~~~~~--~~~~~p~~-~~~~~~-----------~~~k~v~~~~p~~~~-w~~~e~~~~-l~~~- 1220 (1513)
+-+..|.|...|-+.-....+ ..+-.||+ |..+.| ...-.|.|.+|||.- +.|.|+.+| ++.+
T Consensus 567 lsy~sh~cs~acl~~~~~~~~~~~~g~npl~lp~~~~F~r~~a~~rs~~~~~fhv~yktpcg~~lr~~~el~ryL~et~c 646 (1262)
T KOG1141|consen 567 LSYFSHKCSIACLNAAQIAIMVGQPGGNPLNLPYFLTFHRIRASHRSAYIRDFHVEYKTPCGMPLRMRIELYRYLVETRC 646 (1262)
T ss_pred ccccchhhHHHHHhccchhhhccCCCCCccccceEEEeeehhhhhhhhhhhcceeeccCCCccchHHHHHHHHHHHHhcC
Confidence 344456777777655444433 46667888 888877 222358899999987 777776643 3332
Q ss_pred ------cc---------cCCccCCCceeeecCCCCcCCCCeeeeeCCCCcccccccCCCCCcccccCCCCCCCcEEcccC
Q 000433 1221 ------HL---------GRKPLLRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKP 1285 (1513)
Q Consensus 1221 ------~~---------~~~~~~~~~~~~~DIS~G~E~vPV~~vnd~D~~~sl~~~g~~~~~~~~~~~~P~~~F~Yit~~ 1285 (1513)
.| +..+..++++.|-||++|+|.+||.++|+.|.. |++.|.|-.+.
T Consensus 647 ~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neids~-------------------~lpq~ay~K~~ 707 (1262)
T KOG1141|consen 647 KFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEIDSH-------------------RLPQAAYKKHM 707 (1262)
T ss_pred cEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeecccCc-------------------CCccchhheee
Confidence 12 223466888999999999999999999998852 34688898887
Q ss_pred CCCCCCCC-cccCCCCCcccCCCCCCCCCCCccccccccccccccccCCCcCCCcccCCCCceeecCCceeeecCCCCCC
Q 000433 1286 LLDQSLDL-DAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSC 1364 (1513)
Q Consensus 1286 ~~~~~~~~-d~~~~~~GC~C~~g~C~~~~C~C~~l~~~~y~~~~~~~g~~~~~~~~Y~~~G~l~~~~~~~IyECn~~C~C 1364 (1513)
+.+.+.=. -...|+.+|+|.+||-....|.|.++....-.....-+-.+ ...+.|- |++-.....+|||+..|+|
T Consensus 708 ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~-t~gykyK---Rl~e~~ptg~yEc~k~ckc 783 (1262)
T KOG1141|consen 708 IPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVAS-TNGYKYK---RLIEIRPTGPYECLKACKC 783 (1262)
T ss_pred ccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCccccc-CcchhhH---HHHHhcCCCHHHHHHhhcc
Confidence 76554311 22567899999997767788999887432111100000001 1223332 3333345679999999999
Q ss_pred CC-CCCCccccccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHH
Q 000433 1365 DR-TCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNK 1420 (1513)
Q Consensus 1365 ~~-~C~NRvvQ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~ 1420 (1513)
.+ -|.||++|.|.+++|++|+|..||||+|++++|.+|.|||.|.|.+++..-+++
T Consensus 784 ~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdk 840 (1262)
T KOG1141|consen 784 CGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDK 840 (1262)
T ss_pred CcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchh
Confidence 86 599999999999999999999999999999999999999999999987655544
No 3
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.5e-33 Score=332.09 Aligned_cols=142 Identities=38% Similarity=0.654 Sum_probs=132.7
Q ss_pred eeeecCC-CCC-CCCCCCCccccccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCC--
Q 000433 1354 LIYECNH-MCS-CDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG-- 1429 (1513)
Q Consensus 1354 ~IyECn~-~C~-C~~~C~NRvvQ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~-- 1429 (1513)
...||++ .|. |+..|.|+.+|+....+++||.|+.|||||||..+|++|+||.||.||||+..|+++|...|..++
T Consensus 93 t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~k 172 (729)
T KOG4442|consen 93 TSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIK 172 (729)
T ss_pred hhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCc
Confidence 4569988 999 999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CceeEeeccccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ec
Q 000433 1430 CGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YA 1508 (1513)
Q Consensus 1430 ~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yD 1508 (1513)
+.|+|.+.. .++|||+.+||+||||||||+|||.++.|.|. +..||+|||.|.|.+|||| ||
T Consensus 173 h~Yfm~L~~-------------~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~----~~lRvGiFakk~I~~GEEITFD 235 (729)
T KOG4442|consen 173 HYYFMALQG-------------GEYIDATKKGNLARFINHSCDPNAEVQKWTVP----DELRVGIFAKKVIKPGEEITFD 235 (729)
T ss_pred eEEEEEecC-------------CceecccccCcHHHhhcCCCCCCceeeeeeeC----CeeEEEEeEecccCCCceeeEe
Confidence 456666654 58999999999999999999999999999998 7999999999999999999 99
Q ss_pred CCCC
Q 000433 1509 INLS 1512 (1513)
Q Consensus 1509 Yn~s 1512 (1513)
|+|+
T Consensus 236 Yqf~ 239 (729)
T KOG4442|consen 236 YQFD 239 (729)
T ss_pred cccc
Confidence 9986
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.94 E-value=7.4e-28 Score=287.36 Aligned_cols=164 Identities=28% Similarity=0.594 Sum_probs=147.6
Q ss_pred cCCCCCcccCCCCCCCCCCCccccccccccccccccCCCcCCCcccCCCCceeecCCceeeecC-CCCCCC---------
Q 000433 1296 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECN-HMCSCD--------- 1365 (1513)
Q Consensus 1296 ~~~~~GC~C~~g~C~~~~C~C~~l~~~~y~~~~~~~g~~~~~~~~Y~~~G~l~~~~~~~IyECn-~~C~C~--------- 1365 (1513)
.+...||.| ++.|-...|+|.. ..-||. +.|.+.
T Consensus 536 ~nrF~GC~C-k~QC~tkqCpC~~-----------------------------------A~rECdPd~Cl~cg~~~~~d~~ 579 (739)
T KOG1079|consen 536 RNRFPGCRC-KAQCNTKQCPCYL-----------------------------------AVRECDPDVCLMCGNVDHFDSS 579 (739)
T ss_pred HhcCCCCCc-ccccccCcCchhh-----------------------------------hccccCchHHhccCcccccccC
Confidence 455678888 4678777788842 234774 566542
Q ss_pred -CCCCCccccccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCCCceeEeecccccccc
Q 000433 1366 -RTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMG 1444 (1513)
Q Consensus 1366 -~~C~NRvvQ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~~~Ylf~l~~~~~~~~ 1444 (1513)
-+|+|.-+|+|.+.++.|..+...|||+|+.+.+.+++||.||+||+|+.+||++|+..|+....+|+|+|..
T Consensus 580 ~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~------ 653 (739)
T KOG1079|consen 580 KISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNN------ 653 (739)
T ss_pred ccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccc------
Confidence 2799999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCC
Q 000433 1445 RLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLS 1512 (1513)
Q Consensus 1445 ~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s 1512 (1513)
.|+|||++.||.+||+|||-.|||++..++|. +..||+|||.|+|.+|||| |||+||
T Consensus 654 -------dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~----GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 654 -------DYVIDSTRKGNKIRFANHSFNPNCYAKVMMVA----GDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred -------cceEeeeeecchhhhccCCCCCCcEEEEEEec----CCcceeeeehhhcccCceeeeeeccC
Confidence 59999999999999999999999999999998 8999999999999999999 999997
No 5
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=7.1e-23 Score=261.93 Aligned_cols=118 Identities=34% Similarity=0.579 Sum_probs=109.5
Q ss_pred eeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCC--CceeEeeccccccccccccCceeEEE
Q 000433 1378 RVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVRYVI 1455 (1513)
Q Consensus 1378 ~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~~~I 1455 (1513)
+..|...++..+||||||+++|.+|++|.||+||+|...-|+.|+..|...+ ++|+|.+|. .++|
T Consensus 865 kk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~-------------~~Vi 931 (1005)
T KOG1080|consen 865 KKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDD-------------EVVV 931 (1005)
T ss_pred hhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeeccc-------------ceEE
Confidence 3447777889999999999999999999999999999999999999887764 789999986 5899
Q ss_pred eccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCC
Q 000433 1456 DATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLS 1512 (1513)
Q Consensus 1456 DA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s 1512 (1513)
||++.||+||||||||.|||++..+.|+ +..+|+|||.|||.+|||| |||.|-
T Consensus 932 DAtk~gniAr~InHsC~PNCyakvi~V~----g~~~IvIyakr~I~~~EElTYDYkF~ 985 (1005)
T KOG1080|consen 932 DATKKGNIARFINHSCNPNCYAKVITVE----GDKRIVIYSKRDIAAGEELTYDYKFP 985 (1005)
T ss_pred eccccCchhheeecccCCCceeeEEEec----CeeEEEEEEecccccCceeeeecccc
Confidence 9999999999999999999999999999 7889999999999999999 999984
No 6
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.86 E-value=1.6e-22 Score=223.39 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=98.1
Q ss_pred CccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCC
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 959 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C 959 (1513)
..|+|+.|||.+.+.++|.+|.++|..... .+.+.|+.|+|.|.....|+.|+ ++|+
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s---~ka~~C~~C~K~YvSmpALkMHi-rTH~------------------- 185 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDS---KKAFSCKYCGKVYVSMPALKMHI-RTHT------------------- 185 (279)
T ss_pred Cceeccccccccccccccchhhcccccccc---cccccCCCCCceeeehHHHhhHh-hccC-------------------
Confidence 346666666666666666666666654432 23677777777777777777773 3453
Q ss_pred CCccccCCChhhHHhhhhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccc
Q 000433 960 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPR 1039 (1513)
Q Consensus 960 ~~~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r 1039 (1513)
-+++|.+|||.|.+..-|+- |.|+||| ||||.|+.|+|+|.++++|+.||+
T Consensus 186 -----------------------l~c~C~iCGKaFSRPWLLQG-HiRTHTG-----EKPF~C~hC~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 186 -----------------------LPCECGICGKAFSRPWLLQG-HIRTHTG-----EKPFSCPHCGKAFADRSNLRAHMQ 236 (279)
T ss_pred -----------------------CCcccccccccccchHHhhc-ccccccC-----CCCccCCcccchhcchHHHHHHHH
Confidence 35677777777777777777 7777777 777777777777777777777777
Q ss_pred cccCCCccccCccCCcCCChHHHHhhcccC
Q 000433 1040 FKKGLGAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1513)
Q Consensus 1040 ~H~geKpy~C~~CgksFs~~~~L~kH~ksH 1069 (1513)
+|.+.|+|+|..|+|+|+.++.|.+|..+-
T Consensus 237 THS~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 237 THSDVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred hhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence 777777777777777777777777777643
No 7
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.84 E-value=6.1e-22 Score=218.81 Aligned_cols=140 Identities=20% Similarity=0.340 Sum_probs=125.3
Q ss_pred CCCCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccccCC
Q 000433 843 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCG 922 (1513)
Q Consensus 843 ~~eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cg 922 (1513)
.....|+|+.|||.+.+.++|.+| +.+|..-+. .+.+.|++|+|.|.+...|+.|+++|.- +++|.+||
T Consensus 126 ~~~~r~~c~eCgk~ysT~snLsrH-kQ~H~~~~s--~ka~~C~~C~K~YvSmpALkMHirTH~l--------~c~C~iCG 194 (279)
T KOG2462|consen 126 AKHPRYKCPECGKSYSTSSNLSRH-KQTHRSLDS--KKAFSCKYCGKVYVSMPALKMHIRTHTL--------PCECGICG 194 (279)
T ss_pred ccCCceeccccccccccccccchh-hcccccccc--cccccCCCCCceeeehHHHhhHhhccCC--------Cccccccc
Confidence 344569999999999999999999 888875421 3789999999999999999999999983 78999999
Q ss_pred CccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhhcCCcceeeccccCcccCChhHHHH
Q 000433 923 SHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGR 1002 (1513)
Q Consensus 923 k~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~r 1002 (1513)
|.|.+.--|+-| +|+|+|||||.|..|+|.|..+++|+.
T Consensus 195 KaFSRPWLLQGH-----------------------------------------iRTHTGEKPF~C~hC~kAFADRSNLRA 233 (279)
T KOG2462|consen 195 KAFSRPWLLQGH-----------------------------------------IRTHTGEKPFSCPHCGKAFADRSNLRA 233 (279)
T ss_pred ccccchHHhhcc-----------------------------------------cccccCCCCccCCcccchhcchHHHHH
Confidence 999988777777 456888899999999999999999999
Q ss_pred HHHhhccCCCCCCCCCcccCCCCcccCChhhhhccccc
Q 000433 1003 HHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRF 1040 (1513)
Q Consensus 1003 HHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~ 1040 (1513)
|+++|.+ .|+|+|+.|+|.|..++.|.+|...
T Consensus 234 -HmQTHS~-----~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 234 -HMQTHSD-----VKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred -HHHhhcC-----CccccCcchhhHHHHHHHHHHhhhh
Confidence 8999999 8999999999999999999999853
No 8
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.84 E-value=1.5e-21 Score=237.49 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=159.1
Q ss_pred ccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccc---cCCC
Q 000433 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCI---PCGS 923 (1513)
Q Consensus 847 pykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~---~Cgk 923 (1513)
|.+|-+|-+..+-++.|+.| .++|+|| |||+|.+||+.|.++.+|+.||-.|....+.. -.|.|+ +|-+
T Consensus 605 PNqCiiC~rVlSC~saLqmH-yrtHtGE-----RPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R--~q~ScP~~~ic~~ 676 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMH-YRTHTGE-----RPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR--VQFSCPSTFICQK 676 (958)
T ss_pred ccceeeeeecccchhhhhhh-hhcccCc-----CccccccccchhccccchhhcccccccCcccc--ccccCCchhhhcc
Confidence 57799999999999999999 8999999 99999999999999999999999887654322 478999 9999
Q ss_pred ccCCchhhhhhhhhccccc-ccchhhhhccccccCCCCCccccCCChhhHHhhh----------------hhcCCcc---
Q 000433 924 HFGNTEELWLHVQSVHAID-FKMSEVAQQHNQSVGEDSPKKLELGYSASVENHS----------------ENLGSIR--- 983 (1513)
Q Consensus 924 ~F~sks~L~~H~~~vH~~e-f~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~----------------r~HtgeK--- 983 (1513)
.|.+.-.|.+|++ .|.+. .............-..|+++.+.|.....+..|+ +.++.+.
T Consensus 677 kftn~V~lpQhIr-iH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~t 755 (958)
T KOG1074|consen 677 KFTNAVTLPQHIR-IHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVT 755 (958)
T ss_pred cccccccccceEE-eecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccC
Confidence 9999999999954 78744 1111000122223344555566665333333333 3344444
Q ss_pred -eeeccccCcccCChhHHHHHHHhhc-----------------------cCCCCC-------------------------
Q 000433 984 -KFICRFCGLKFDLLPDLGRHHQAAH-----------------------MGPNLV------------------------- 1014 (1513)
Q Consensus 984 -pykC~~CgKsF~sks~L~rHHqrvH-----------------------tge~~~------------------------- 1014 (1513)
+..|..|+..+.....+..+ -..+ ++++..
T Consensus 756 p~~~e~~~~~~~~~e~~i~~~-g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~ 834 (958)
T KOG1074|consen 756 PPPPENSCGRELEGEMAISVR-GSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQET 834 (958)
T ss_pred CCccccccccccCcccccccc-cchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccc
Confidence 56788888887776665552 2211 110000
Q ss_pred -----------------------------------------CCCCcccCCCCcccCChhhhhcccccccCCCccccCccC
Q 000433 1015 -----------------------------------------NSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRN 1053 (1513)
Q Consensus 1015 -----------------------------------------~eKpykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~Cg 1053 (1513)
......|.+|++.|...+.|..|||+|+|+|||.|.+|+
T Consensus 835 ~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~ 914 (958)
T KOG1074|consen 835 SMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCE 914 (958)
T ss_pred cccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhh
Confidence 022377999999999999999999999999999999999
Q ss_pred CcCCChHHHHhhcccCC
Q 000433 1054 RGAAGMKKRIQTLKPLA 1070 (1513)
Q Consensus 1054 ksFs~~~~L~kH~ksH~ 1070 (1513)
+.|..+..|..|+.+|.
T Consensus 915 ~aFttrgnLKvHMgtH~ 931 (958)
T KOG1074|consen 915 EAFTTRGNLKVHMGTHM 931 (958)
T ss_pred hhhhhhhhhhhhhcccc
Confidence 99999999999999885
No 9
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.82 E-value=1.1e-21 Score=241.78 Aligned_cols=129 Identities=39% Similarity=0.629 Sum_probs=117.1
Q ss_pred CCCCccccc-cceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHH-hcccCCCCCceeEeecccccccc
Q 000433 1367 TCPNRVLQN-GVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKR-RSRYGRDGCGYMLNIGAHINDMG 1444 (1513)
Q Consensus 1367 ~C~NRvvQ~-g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R-~~~y~~~~~~Ylf~l~~~~~~~~ 1444 (1513)
+|.|+.+|+ +.-.+|+||+.+.+||||+|.++|.+|+||+||+|||++..+++.+ ...|-.+.+.|+..++.
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p------ 1238 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDP------ 1238 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCc------
Confidence 378887775 6777999999999999999999999999999999999999998877 34466777788888876
Q ss_pred ccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCC
Q 000433 1445 RLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLS 1512 (1513)
Q Consensus 1445 ~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s 1512 (1513)
..+||+.++||.+|||||||.|||.++.|.++ |..||++||+|||++|||| |||||.
T Consensus 1239 -------~l~id~~R~~n~~RfinhscKPNc~~qkwSVN----G~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1239 -------GLFIDIPRMGNGARFINHSCKPNCEMQKWSVN----GEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred -------cccCChhhccccccccccccCCCCcccccccc----ceeeeeeeecCCCCCCceEEEecccc
Confidence 58899999999999999999999999999999 9999999999999999999 999874
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.82 E-value=3.7e-20 Score=183.29 Aligned_cols=113 Identities=41% Similarity=0.686 Sum_probs=96.5
Q ss_pred eEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCC--CceeEeeccccccccccccCceeEEEec
Q 000433 1380 KLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVRYVIDA 1457 (1513)
Q Consensus 1380 ~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~~~IDA 1457 (1513)
++++++++.+|+||+|.++|++|++|++|.|.++...++..+...+...+ ..|+|.... .++||+
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~id~ 67 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS-------------DLCIDA 67 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC-------------CEEEeC
Confidence 36788889999999999999999999999999999888877653333333 367777643 488999
Q ss_pred cccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecC
Q 000433 1458 TKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAI 1509 (1513)
Q Consensus 1458 ~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDY 1509 (1513)
+..||++|||||||.||+.+..+..+ +..+|.|+|+|||++|||| +||
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVN----GDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEEC----CCcEEEEEECCCcCCCCEEeecC
Confidence 99999999999999999999888776 4458999999999999999 988
No 11
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.77 E-value=2e-19 Score=201.66 Aligned_cols=183 Identities=19% Similarity=0.208 Sum_probs=88.3
Q ss_pred cCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhh
Q 000433 852 ICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEEL 931 (1513)
Q Consensus 852 ~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L 931 (1513)
.|-+.|.++..|+.| .+.|+++ |...|+.||.-|+++..|..|++..+.... .+|+|..|.|.|.++..|
T Consensus 184 ~Ct~~~~~k~~LreH-~r~Hs~e-----KvvACp~Cg~~F~~~tkl~DH~rRqt~l~~----n~fqC~~C~KrFaTeklL 253 (467)
T KOG3608|consen 184 MCTKHMGNKYRLREH-IRTHSNE-----KVVACPHCGELFRTKTKLFDHLRRQTELNT----NSFQCAQCFKRFATEKLL 253 (467)
T ss_pred hhhhhhccHHHHHHH-HHhcCCC-----eEEecchHHHHhccccHHHHHHHhhhhhcC----CchHHHHHHHHHhHHHHH
Confidence 355555555555555 4555555 445555555555555555555544433221 145555555555555555
Q ss_pred hhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhh-cCCcceeeccccCcccCChhHHHHHHHhhccC
Q 000433 932 WLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSEN-LGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG 1010 (1513)
Q Consensus 932 ~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~-HtgeKpykC~~CgKsF~sks~L~rHHqrvHtg 1010 (1513)
..|+. .|. .-|+|. .+...++..++|..|++. |...|||+|+.|++.|.+.++|.+ |..+|..
T Consensus 254 ~~Hv~-rHv-----------n~ykCp---lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~k-H~~~HS~ 317 (467)
T KOG3608|consen 254 KSHVV-RHV-----------NCYKCP---LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAK-HVQVHSK 317 (467)
T ss_pred HHHHH-Hhh-----------hccccc---ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHH-HHHhccc
Confidence 55533 232 122222 224445555555555542 444555555555555555555555 3445543
Q ss_pred CCCCCCCCcccCC--CCcccCChhhhhccccccc-CC--CccccCccCCcCCChHHHHhhc
Q 000433 1011 PNLVNSRPHKKGI--RFYAYKLKSGRLSRPRFKK-GL--GAVSYRIRNRGAAGMKKRIQTL 1066 (1513)
Q Consensus 1011 e~~~~eKpykC~~--CgK~F~~ks~L~~H~r~H~-ge--Kpy~C~~CgksFs~~~~L~kH~ 1066 (1513)
..|.|.. |..+|.....|++|++.|+ |. -+|.|..|++.|.+-.+|..|.
T Consensus 318 ------~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL 372 (467)
T KOG3608|consen 318 ------TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHL 372 (467)
T ss_pred ------cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHH
Confidence 2455554 5555555555555553333 33 2355555555555555555553
No 12
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.75 E-value=4.8e-19 Score=198.61 Aligned_cols=207 Identities=18% Similarity=0.249 Sum_probs=142.8
Q ss_pred eeccccccccCHHHHHHhhccCCccccccccccccccccCChHHHHhHhhcCCcccCCCCCCccCcccccccccccccch
Q 000433 754 LHLACELFYKLLKSILSLRNPVPMEIQFQWALSEASKDAGIGEFLMKLVCCEKERLSKTWGFDANENAHVSSSVVEDSAV 833 (1513)
Q Consensus 754 lcq~C~k~F~~~~~L~~H~r~H~~ek~y~~~C~~CgK~F~s~~~L~k~iHteKpy~C~~CgF~~~s~~q~~s~~~~~s~~ 833 (1513)
.-..|-+.|.++..|++|.|+|.+++.. .|+.||.-|.++..|.
T Consensus 181 ~W~~Ct~~~~~k~~LreH~r~Hs~eKvv--ACp~Cg~~F~~~tkl~---------------------------------- 224 (467)
T KOG3608|consen 181 NWAMCTKHMGNKYRLREHIRTHSNEKVV--ACPHCGELFRTKTKLF---------------------------------- 224 (467)
T ss_pred cchhhhhhhccHHHHHHHHHhcCCCeEE--ecchHHHHhccccHHH----------------------------------
Confidence 3367999999999999999999999998 8888888887665554
Q ss_pred hHHHHhhc--cCCCCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhcccccccc
Q 000433 834 LPLAIAGR--SEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE 911 (1513)
Q Consensus 834 ~L~~H~r~--H~~eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~ 911 (1513)
.|.+. -....+|.|..|.|.|.+...|..| ++.|-.- |+|+.|..+....+.|.+|++..|.+.
T Consensus 225 ---DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~H-v~rHvn~-------ykCplCdmtc~~~ssL~~H~r~rHs~d--- 290 (467)
T KOG3608|consen 225 ---DHLRRQTELNTNSFQCAQCFKRFATEKLLKSH-VVRHVNC-------YKCPLCDMTCSSASSLTTHIRYRHSKD--- 290 (467)
T ss_pred ---HHHHhhhhhcCCchHHHHHHHHHhHHHHHHHH-HHHhhhc-------ccccccccCCCChHHHHHHHHhhhccC---
Confidence 33322 2234467777777777777777777 5666543 777777777777777777777666543
Q ss_pred ccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhhcCCcceeeccc--
Q 000433 912 QCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRF-- 989 (1513)
Q Consensus 912 ~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~HtgeKpykC~~-- 989 (1513)
+||+|..|++.|.+.+.|.+|+. +|. +..|.|+.
T Consensus 291 --kpfKCd~Cd~~c~~esdL~kH~~-~HS-----------------------------------------~~~y~C~h~~ 326 (467)
T KOG3608|consen 291 --KPFKCDECDTRCVRESDLAKHVQ-VHS-----------------------------------------KTVYQCEHPD 326 (467)
T ss_pred --CCccccchhhhhccHHHHHHHHH-hcc-----------------------------------------ccceecCCCC
Confidence 47777777777777777777744 554 13466655
Q ss_pred cCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccCC------CccccCccCCcCC
Q 000433 990 CGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGL------GAVSYRIRNRGAA 1057 (1513)
Q Consensus 990 CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~ge------Kpy~C~~CgksFs 1057 (1513)
|..+|++...+++|.+.+|.|.+ +-+|.|..|++.|++-.+|..|++..++. +.|..+.|...|-
T Consensus 327 C~~s~r~~~q~~~H~~evhEg~n---p~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m 397 (467)
T KOG3608|consen 327 CHYSVRTYTQMRRHFLEVHEGNN---PILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM 397 (467)
T ss_pred CcHHHHHHHHHHHHHHHhccCCC---CCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence 77777777777776666665532 34677777777777777777776544443 3455566666653
No 13
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.72 E-value=1.9e-18 Score=206.86 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=77.1
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccCCCccccCccCCcCCChHHH
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKR 1062 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~CgksFs~~~~L 1062 (1513)
.+|.|+.|+|.|...+.|.+ |+--|+| .|||+|.+|.|+|..+..|..|+|.|.|+|||.|+.|+|.|+.....
T Consensus 893 gmyaCDqCDK~FqKqSSLaR-HKYEHsG-----qRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSY 966 (1007)
T KOG3623|consen 893 GMYACDQCDKAFQKQSSLAR-HKYEHSG-----QRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSY 966 (1007)
T ss_pred ccchHHHHHHHHHhhHHHHH-hhhhhcC-----CCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccch
Confidence 46999999999999999999 8999999 99999999999999999999999999999999999999999988888
Q ss_pred HhhcccCC
Q 000433 1063 IQTLKPLA 1070 (1513)
Q Consensus 1063 ~kH~ksH~ 1070 (1513)
.+|+. |.
T Consensus 967 SQHMN-HR 973 (1007)
T KOG3623|consen 967 SQHMN-HR 973 (1007)
T ss_pred Hhhhc-cc
Confidence 88887 64
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.69 E-value=3.4e-17 Score=179.77 Aligned_cols=122 Identities=33% Similarity=0.459 Sum_probs=106.5
Q ss_pred ccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCC--CceeEeeccccccccccccCcee
Q 000433 1375 NGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVR 1452 (1513)
Q Consensus 1375 ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~ 1452 (1513)
.|..-.|.+....+||.||+|...+.+|+||.||.|.+|...||..|+..|..+. -.|+|.+... ...
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~----------sk~ 321 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN----------SKK 321 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc----------Cee
Confidence 4555666666667799999999999999999999999999999999999886543 3477777653 247
Q ss_pred EEEeccc-cCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCC
Q 000433 1453 YVIDATK-YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAIN 1510 (1513)
Q Consensus 1453 ~~IDA~~-~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn 1510 (1513)
|||||+. .+-++|.||||-.+||....|.++ +.||+.++|.|||.+|||| |||+
T Consensus 322 yCiDAT~et~~lGRLINHS~~gNl~TKvv~Id----g~pHLiLvA~rdIa~GEELlYDYG 377 (392)
T KOG1085|consen 322 YCIDATKETPWLGRLINHSVRGNLKTKVVEID----GSPHLILVARRDIAQGEELLYDYG 377 (392)
T ss_pred eeeecccccccchhhhcccccCcceeeEEEec----CCceEEEEeccccccchhhhhhcc
Confidence 9999998 678899999999999999999999 8999999999999999999 9997
No 15
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.69 E-value=2.7e-17 Score=162.61 Aligned_cols=102 Identities=32% Similarity=0.664 Sum_probs=69.7
Q ss_pred cCCCCcCCCCeeeeeCCCCcccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCcccCCCCC-CCCCC
Q 000433 1236 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANSTC-FPETC 1314 (1513)
Q Consensus 1236 DIS~G~E~vPV~~vnd~D~~~sl~~~g~~~~~~~~~~~~P~~~F~Yit~~~~~~~~~~d~~~~~~GC~C~~g~C-~~~~C 1314 (1513)
|||.|+|++||+++|++|+. .||++|+||+++++..++......+..||+|.+ .| .+.+|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~------------------~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~-~C~~~~~C 61 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDE------------------PPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSG-DCSNPSNC 61 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--------------------SSTSSEE-SS-EESTTSS-TBGGGTS----SS-SSTCTTTS
T ss_pred CCCCCccCCCEEEEeCCCCC------------------CCCCCeEEeeeEEcCCCccccccccCccCccCC-CCCCCCCC
Confidence 89999999999999999964 234799999999999887533356678999976 46 67889
Q ss_pred CccccccccccccccccCCCcCCCcccCCCCceeecCCceeeecCCCCCCCCCCCCc
Q 000433 1315 DHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNR 1371 (1513)
Q Consensus 1315 ~C~~l~~~~y~~~~~~~g~~~~~~~~Y~~~G~l~~~~~~~IyECn~~C~C~~~C~NR 1371 (1513)
.|++.+ ++.++|+.+|+|......+|||||+.|+|+.+|+||
T Consensus 62 ~C~~~~---------------~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 62 ECLQRN---------------GGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp HHHCCT---------------SSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCcccc---------------CccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 997542 234689999998867888999999999999999998
No 16
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.69 E-value=1.6e-17 Score=203.03 Aligned_cols=212 Identities=20% Similarity=0.222 Sum_probs=137.0
Q ss_pred ccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccC------cccccc
Q 000433 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCM------LQQCIP 920 (1513)
Q Consensus 847 pykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~k------pykC~~ 920 (1513)
+++|.+|.|.|.+.+.|+.| .+.|+++ +||+|.+||..|.++.+|+.|...|+...+..... .+.|.+
T Consensus 353 khkCr~CakvfgS~SaLqiH-lRSHTGE-----RPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~i 426 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIH-LRSHTGE-----RPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYVI 426 (958)
T ss_pred cchhhhhHhhcCchhhhhhh-hhccCCC-----CCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhccee
Confidence 47899999999999999999 8999999 99999999999999999999999888765333222 245667
Q ss_pred CCCccCCchhhhhhhhhccccc------------------------------------ccchhhhh--------------
Q 000433 921 CGSHFGNTEELWLHVQSVHAID------------------------------------FKMSEVAQ-------------- 950 (1513)
Q Consensus 921 Cgk~F~sks~L~~H~~~vH~~e------------------------------------f~~~~~~k-------------- 950 (1513)
|.-.|.+-....-|....|... |......+
T Consensus 427 ~st~~p~g~~vpp~k~~~~~~~~e~~~~~~sts~g~~~~~~~~~sv~~~~ts~~~~~~~s~~~~~~~~~i~~~s~e~e~~ 506 (958)
T KOG1074|consen 427 TSTGLPYGPSVPPEKAEEEAATVEPKLLVRSTSVGSATESLTPSSVSFGETSAPPLPAFSKFVLMKTVEIKSKSEEPEPA 506 (958)
T ss_pred eccccCCCCCCCCCCCcchhccccccccccccccCCCCCcccccccccccccCCCCCccccccccCCcccccccCCCCcc
Confidence 7666665555444421111110 00000000
Q ss_pred ------------cc-------------ccccCC-----------CCCccccCCCh-hhHHhhhh-----hcC--------
Q 000433 951 ------------QH-------------NQSVGE-----------DSPKKLELGYS-ASVENHSE-----NLG-------- 980 (1513)
Q Consensus 951 ------------~k-------------~~~C~~-----------C~~~~~~f~~~-s~L~~H~r-----~Ht-------- 980 (1513)
.. .+.+.. -.|.+..++-. ..+.+-+. .+.
T Consensus 507 vs~g~~~~~~~~gs~l~~s~~ks~~s~~~~~~~~~~~asa~m~~~~~~~~p~g~s~~~~aq~~~l~d~~~~~~~~~~tss 586 (958)
T KOG1074|consen 507 VSEGSAISGVLEGSPLRMSSGKSVESLPVEADLLNHAASAGMFPPSYVSRPLGPSEDTTAQALQLVDKIPEALIEISTSS 586 (958)
T ss_pred ccccccccccccCCccccccccCccccchhccccchhhccccCCchhhcCCCCcchhhHHHhhhhhccChhhcceeeccc
Confidence 00 000000 00001111100 00000000 000
Q ss_pred ---------------CcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccCCC
Q 000433 981 ---------------SIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLG 1045 (1513)
Q Consensus 981 ---------------geKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~geK 1045 (1513)
..-|-+|-+|-+...-++.|+. |.|+|+| +|||+|.+||++|+++.+|+.||-+|...-
T Consensus 587 eS~kl~slv~~~~~~~TdPNqCiiC~rVlSC~saLqm-HyrtHtG-----ERPFkCKiCgRAFtTkGNLkaH~~vHka~p 660 (958)
T KOG1074|consen 587 ESPKLTSLVENSENKRTDPNQCIICLRVLSCPSALQM-HYRTHTG-----ERPFKCKICGRAFTTKGNLKAHMSVHKAKP 660 (958)
T ss_pred CCccccccccccccccCCccceeeeeecccchhhhhh-hhhcccC-----cCccccccccchhccccchhhcccccccCc
Confidence 0146788888888888888888 7888888 888888888888888888888887777553
Q ss_pred ----ccccC---ccCCcCCChHHHHhhcccCC
Q 000433 1046 ----AVSYR---IRNRGAAGMKKRIQTLKPLA 1070 (1513)
Q Consensus 1046 ----py~C~---~CgksFs~~~~L~kH~ksH~ 1070 (1513)
.++|+ +|-+.|.+.-.|.+|.+.|.
T Consensus 661 ~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~ 692 (958)
T KOG1074|consen 661 PARVQFSCPSTFICQKKFTNAVTLPQHIRIHL 692 (958)
T ss_pred cccccccCCchhhhcccccccccccceEEeec
Confidence 37788 88888888888888888875
No 17
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.63 E-value=4.6e-16 Score=152.69 Aligned_cols=96 Identities=34% Similarity=0.652 Sum_probs=78.8
Q ss_pred eecCCCCcCCCCeeeeeCCCCcccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCC-cccCCCCCcccCCCCCCCC
Q 000433 1234 CDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDL-DAESLQLGCACANSTCFPE 1312 (1513)
Q Consensus 1234 ~~DIS~G~E~vPV~~vnd~D~~~sl~~~g~~~~~~~~~~~~P~~~F~Yit~~~~~~~~~~-d~~~~~~GC~C~~g~C~~~ 1312 (1513)
+.|||+|+|++||++||++|.+ .|+++|+||++++++.++.+ ....+..||+|.+ .|.+.
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~------------------~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~-~C~~~ 61 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDED------------------PPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG-DCSSS 61 (98)
T ss_pred CccccCCccCCCcceEecCCCC------------------CCCCCcEECcceEcCCCcccccCCCCCCCCcCCC-CCCCC
Confidence 3699999999999999999974 23379999999999988753 3467889999997 67776
Q ss_pred C-CCccccccccccccccccCCCcCCCcccCCCCceeecCCceeeecCCCCC
Q 000433 1313 T-CDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCS 1363 (1513)
Q Consensus 1313 ~-C~C~~l~~~~y~~~~~~~g~~~~~~~~Y~~~G~l~~~~~~~IyECn~~C~ 1363 (1513)
. |.|+++ .++.|+|+..+++++..+.+|||||+.|+
T Consensus 62 ~~C~C~~~---------------~~~~~~Y~~~~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 62 NKCECARK---------------NGGEFAYELNGGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred CcCCcHhh---------------cCCccCcccCCCEEeCCCCEEEcCCCCCC
Confidence 6 999653 24679997777778888999999999995
No 18
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.39 E-value=8e-14 Score=172.70 Aligned_cols=144 Identities=30% Similarity=0.362 Sum_probs=116.8
Q ss_pred eeecCCCCCCCCCCCCccccccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCCCceeE
Q 000433 1355 IYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYML 1434 (1513)
Q Consensus 1355 IyECn~~C~C~~~C~NRvvQ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~~~Ylf 1434 (1513)
+.++...+.....+.|............+..+..+||||||.+.|++|++|.+|.|+++...++..+...+...+..+.|
T Consensus 308 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
T COG2940 308 SDFSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSF 387 (480)
T ss_pred cccccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccch
Confidence 33455555555667777777777788888889999999999999999999999999999999998888776444433333
Q ss_pred eeccccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCCC
Q 000433 1435 NIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLSL 1513 (1513)
Q Consensus 1435 ~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s~ 1513 (1513)
.... ...+++|+...|+++|||||||.||+.+....+. +..++.++|+|||.+|||| +||+.++
T Consensus 388 ~~~~-----------~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~----g~~~~~~~~~rDI~~geEl~~dy~~~~ 452 (480)
T COG2940 388 GLLE-----------DKDKVRDSQKAGDVARFINHSCTPNCEASPIEVN----GIFKISIYAIRDIKAGEELTYDYGPSL 452 (480)
T ss_pred hhcc-----------ccchhhhhhhcccccceeecCCCCCcceeccccc----ccceeeecccccchhhhhhcccccccc
Confidence 3322 1257899999999999999999999999877766 3778999999999999999 9999764
No 19
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.34 E-value=1.6e-13 Score=145.26 Aligned_cols=84 Identities=23% Similarity=0.489 Sum_probs=62.4
Q ss_pred CCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccccCCCc
Q 000433 845 EKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSH 924 (1513)
Q Consensus 845 eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~ 924 (1513)
...|.|.+|+|.|.-..-|.+| ++.|... +.|-|..|||.|.....|++|+++|++.+ ||+|..|++.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh-~kch~~v-----kr~lct~cgkgfndtfdlkrh~rthtgvr------pykc~~c~ka 182 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRH-LKCHSDV-----KRHLCTFCGKGFNDTFDLKRHTRTHTGVR------PYKCSLCEKA 182 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHH-hhhccHH-----HHHHHhhccCcccchhhhhhhhccccCcc------ccchhhhhHH
Confidence 4457777777777777777777 6777776 77777777777777777777777777776 7777777777
Q ss_pred cCCchhhhhhhhhccc
Q 000433 925 FGNTEELWLHVQSVHA 940 (1513)
Q Consensus 925 F~sks~L~~H~~~vH~ 940 (1513)
|..+..|..|++.+|.
T Consensus 183 ftqrcsleshl~kvhg 198 (267)
T KOG3576|consen 183 FTQRCSLESHLKKVHG 198 (267)
T ss_pred HHhhccHHHHHHHHcC
Confidence 7777777777776665
No 20
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.29 E-value=6.4e-13 Score=140.68 Aligned_cols=117 Identities=19% Similarity=0.316 Sum_probs=76.9
Q ss_pred CccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCC
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 959 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C 959 (1513)
..|.|.+|+|.|.-...|.+|++-|...+ .|-|..||+.|.....|++|+ ++|++-
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~vk------r~lct~cgkgfndtfdlkrh~-rthtgv----------------- 171 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVK------RHLCTFCGKGFNDTFDLKRHT-RTHTGV----------------- 171 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHHH------HHHHhhccCcccchhhhhhhh-ccccCc-----------------
Confidence 44677777777777777777777776665 566777777777777777773 366543
Q ss_pred CCccccCCChhhHHhhhhhcCCcceeeccccCcccCChhHHHHHHHhhccC--------CCCCCCCCcccCCCCcccCCh
Q 000433 960 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG--------PNLVNSRPHKKGIRFYAYKLK 1031 (1513)
Q Consensus 960 ~~~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtg--------e~~~~eKpykC~~CgK~F~~k 1031 (1513)
+||+|..|+|.|.++-.|..|.+++|.- .+ .|-|.|+.||..-...
T Consensus 172 -----------------------rpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr---~kl~vcedcg~t~~~~ 225 (267)
T KOG3576|consen 172 -----------------------RPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERR---AKLYVCEDCGYTSERP 225 (267)
T ss_pred -----------------------cccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhh---hheeeecccCCCCCCh
Confidence 6666777777777766666666666631 11 5667777777777667
Q ss_pred hhhhcccccccCCCc
Q 000433 1032 SGRLSRPRFKKGLGA 1046 (1513)
Q Consensus 1032 s~L~~H~r~H~geKp 1046 (1513)
..+..|++.|+...|
T Consensus 226 e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 226 EVYYLHLKLHHPFSP 240 (267)
T ss_pred hHHHHHHHhcCCCCH
Confidence 777777766665544
No 21
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.21 E-value=2.9e-12 Score=154.67 Aligned_cols=123 Identities=24% Similarity=0.381 Sum_probs=99.5
Q ss_pred cccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCC
Q 000433 882 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSP 961 (1513)
Q Consensus 882 YkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~ 961 (1513)
..|+.|.+.+.....|+.|++..|...+ ..|.|..|..+|..+..|.+||. .|... ..-
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne----~nfsC~lCsytFAyRtQLErhm~-~hkpg--------------~dq-- 269 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNE----PNFSCMLCSYTFAYRTQLERHMQ-LHKPG--------------GDQ-- 269 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCC----CCCcchhhhhhhhhHHHHHHHHH-hhcCC--------------Ccc--
Confidence 5799999999999999999988776543 26899999999999999999965 56421 000
Q ss_pred ccccCCChhhHHhhhhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccc
Q 000433 962 KKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 1041 (1513)
Q Consensus 962 ~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H 1041 (1513)
..|.-.-...|.|+|.+|||.|+.+.+|+. |.|+|.| +|||.|+.|+|+|+...++-.||-.+
T Consensus 270 -----------a~sltqsa~lRKFKCtECgKAFKfKHHLKE-HlRIHSG-----EKPfeCpnCkKRFSHSGSySSHmSSK 332 (1007)
T KOG3623|consen 270 -----------AISLTQSALLRKFKCTECGKAFKFKHHLKE-HLRIHSG-----EKPFECPNCKKRFSHSGSYSSHMSSK 332 (1007)
T ss_pred -----------cccccchhhhccccccccchhhhhHHHHHh-hheeecC-----CCCcCCcccccccccCCccccccccc
Confidence 011111233488999999999999999999 8999999 99999999999999999999999554
Q ss_pred c
Q 000433 1042 K 1042 (1513)
Q Consensus 1042 ~ 1042 (1513)
.
T Consensus 333 K 333 (1007)
T KOG3623|consen 333 K 333 (1007)
T ss_pred c
Confidence 4
No 22
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.04 E-value=8.9e-11 Score=121.56 Aligned_cols=117 Identities=14% Similarity=0.010 Sum_probs=72.2
Q ss_pred CccccccccccCCcEEEEEcCeeecHHHHHHHh---ccc--CCCCCceeEee--------------------------cc
Q 000433 1390 GWAVRAGQAILRGTFVCEYIGEVLDELETNKRR---SRY--GRDGCGYMLNI--------------------------GA 1438 (1513)
Q Consensus 1390 GwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~---~~y--~~~~~~Ylf~l--------------------------~~ 1438 (1513)
|+||+|+++|++|++|+++.+.+++..++.... ... ........... ..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999987775420 000 00000000000 00
Q ss_pred cccc-------------ccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCe
Q 000433 1439 HIND-------------MGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPS 1505 (1513)
Q Consensus 1439 ~~~~-------------~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEE 1505 (1513)
.... .............++.....++.||||||.|||.+...... ....+.|.|.|||++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~----~~~~~~~~a~r~I~~GeE 156 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDG----DGGCLVVRATRDIKKGEE 156 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEET----TTTEEEEEESS-B-TTSB
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeec----ccceEEEEECCccCCCCE
Confidence 0000 00000001123456666778999999999999998877553 567899999999999999
Q ss_pred e-ecCC
Q 000433 1506 F-YAIN 1510 (1513)
Q Consensus 1506 L-yDYn 1510 (1513)
| +.||
T Consensus 157 i~isYG 162 (162)
T PF00856_consen 157 IFISYG 162 (162)
T ss_dssp EEEEST
T ss_pred EEEEEC
Confidence 9 8886
No 23
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.82 E-value=4.3e-09 Score=130.13 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=29.5
Q ss_pred hhhhhcCCcceeeccccCcccC----------ChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhccc
Q 000433 974 NHSENLGSIRKFICRFCGLKFD----------LLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRP 1038 (1513)
Q Consensus 974 ~H~r~HtgeKpykC~~CgKsF~----------sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~ 1038 (1513)
.|+.+|.+++++.|++|++.|. ..+.|.. |..++ | .+++.|..|++.|..+ .|..|+
T Consensus 494 ~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~-HE~~C-G-----~rt~~C~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 494 QHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSE-HESIC-G-----SRTAPCDSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred hhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHH-HHHhc-C-----CcceEccccCCeeeeh-hHHHHH
Confidence 3333444556666666666663 1235555 44443 4 4566666666555544 344444
No 24
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.71 E-value=2e-08 Score=124.38 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=71.5
Q ss_pred cccCCChhhHHhhhhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCC----------hh
Q 000433 963 KLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKL----------KS 1032 (1513)
Q Consensus 963 ~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~----------ks 1032 (1513)
+..|. ...|..|+++|+ ++|.|+ ||+.| .+..|.. |+++|.. .+++.|..|++.|.. .+
T Consensus 460 gk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~-H~~thCp-----~Kpi~C~fC~~~v~~g~~~~d~~d~~s 528 (567)
T PLN03086 460 GQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQ-HQASTCP-----LRLITCRFCGDMVQAGGSAMDVRDRLR 528 (567)
T ss_pred CCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHh-hhhccCC-----CCceeCCCCCCccccCccccchhhhhh
Confidence 55554 355677777764 789999 99765 6789988 7899999 899999999999952 45
Q ss_pred hhhcccccccCCCccccCccCCcCCChHHHHhhc
Q 000433 1033 GRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTL 1066 (1513)
Q Consensus 1033 ~L~~H~r~H~geKpy~C~~CgksFs~~~~L~kH~ 1066 (1513)
.|..|...+ |.+++.|..||+.+..+ .+..|+
T Consensus 529 ~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 529 GMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred hHHHHHHhc-CCcceEccccCCeeeeh-hHHHHH
Confidence 899999886 99999999999988643 333443
No 25
>PHA00733 hypothetical protein
Probab=98.61 E-value=2.5e-08 Score=102.86 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=68.8
Q ss_pred CccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhhcCCcceeeccccCcc
Q 000433 914 MLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLK 993 (1513)
Q Consensus 914 kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKs 993 (1513)
+++.|.+|.+.|.+...|..| +.|.+|+..|. .+||.|+.||+.
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~-----------------------------------~~l~~~~~~~~-~kPy~C~~Cgk~ 82 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDES-----------------------------------SYLYKLLTSKA-VSPYVCPLCLMP 82 (128)
T ss_pred hhHHHHHHhhhccChhhhcch-----------------------------------HHHHhhcccCC-CCCccCCCCCCc
Confidence 378899998888887777766 13556655444 789999999999
Q ss_pred cCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccC
Q 000433 994 FDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKG 1043 (1513)
Q Consensus 994 F~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~g 1043 (1513)
|.+...|.. |++.|+. +|.|+.|++.|.....|..|++.+++
T Consensus 83 Fss~s~L~~-H~r~h~~-------~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 83 FSSSVSLKQ-HIRYTEH-------SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCHHHHHH-HHhcCCc-------CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 999999999 6777643 68999999999999999999977764
No 26
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.54 E-value=1e-07 Score=117.12 Aligned_cols=262 Identities=25% Similarity=0.413 Sum_probs=172.4
Q ss_pred CCCceeeecCCCCcCCCCeeeeeCCCCcccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCcccCCC
Q 000433 1228 LRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANS 1307 (1513)
Q Consensus 1228 ~~~~~~~~DIS~G~E~vPV~~vnd~D~~~sl~~~g~~~~~~~~~~~~P~~~F~Yit~~~~~~~~~~d~~~~~~GC~C~~g 1307 (1513)
...++-.+|.+.|.+.+|||.||.+|..+.+.-+ ++. ..|.|.-+... .-....+..||+|...
T Consensus 871 D~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~----d~~--------~~~~~~~~~~~----s~~~~~~~~~~s~d~h 934 (1262)
T KOG1141|consen 871 DDKGLDVADFSLGTSGIPIPLVNSVDNDEPPSCE----DSK--------RRFQYNDQVDI----SSVSRDFCSGCSCDGH 934 (1262)
T ss_pred cccccchhhhhccccCCCCccccccccCCCcccc----ccc--------eeecccccchh----hhhccccccccccCCC
Confidence 3455667899999999999999988864322211 111 12334332111 1123467789999753
Q ss_pred CCCCCCCCcccccccccccccc---ccCCCcCCCcccCCCCceeecCCceeeecCCCCCCCCCCCCccccccceeeEE--
Q 000433 1308 TCFPETCDHVYLFDNDYEDAKD---IDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLE-- 1382 (1513)
Q Consensus 1308 ~C~~~~C~C~~l~~~~y~~~~~---~~g~~~~~~~~Y~~~G~l~~~~~~~IyECn~~C~C~~~C~NRvvQ~g~~~~Le-- 1382 (1513)
+-+-+.|.|.++.-........ .+|...--.-.|+.+.. .....|||++.|.|...|.||++|++.+++++
T Consensus 935 p~d~~~~~~~~~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~----~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~ 1010 (1262)
T KOG1141|consen 935 PSDASKCECQQLSIEAMKRCPPNLSFDGHDELYESSEKQNSF----LKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVS 1010 (1262)
T ss_pred CcccCcccCCCCChhhhcCCCCccccCchhhhhhhhhhcchh----hhccceeccccchhcccccchhhhcCCccceeee
Confidence 3234678886653222211100 00000000011111111 12357899999999999999999999887765
Q ss_pred ------EEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCCCceeEeeccc-----------------
Q 000433 1383 ------VFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAH----------------- 1439 (1513)
Q Consensus 1383 ------VfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~~~Ylf~l~~~----------------- 1439 (1513)
||++...|||+++..+|+..+|||+|+|...++.-+.+-..... +.|.-++|..
T Consensus 1011 s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqa---d~~sn~~D~~~~~~l~es~~~~~T~~r 1087 (1262)
T KOG1141|consen 1011 SFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQA---DQYSNDLDLKDTVELEESREDHETDFR 1087 (1262)
T ss_pred ecccccccccccccccccccccCCCCcccccccCCCCchhhHHHHhhhhh---ccccCccchhhhhhhhhcccccccccC
Confidence 56667889999999999999999999999988766654322100 0011110000
Q ss_pred -------------cc------------------cc----c----------------------------------------
Q 000433 1440 -------------IN------------------DM----G---------------------------------------- 1444 (1513)
Q Consensus 1440 -------------~~------------------~~----~---------------------------------------- 1444 (1513)
.+ .+ .
T Consensus 1088 ~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~ 1167 (1262)
T KOG1141|consen 1088 GDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVF 1167 (1262)
T ss_pred CCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCccccc
Confidence 00 00 0
Q ss_pred ---ccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCC
Q 000433 1445 ---RLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLS 1512 (1513)
Q Consensus 1445 ---~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s 1512 (1513)
..++....|+|||+..||++||+||||+||+.+|+|+++++|.++|+|||||.|-|+||+|| |||+|.
T Consensus 1168 ~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye 1239 (1262)
T KOG1141|consen 1168 NWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYE 1239 (1262)
T ss_pred chhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccc
Confidence 00111357999999999999999999999999999999999999999999999999999999 999985
No 27
>PHA00733 hypothetical protein
Probab=98.47 E-value=9e-08 Score=98.77 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=74.2
Q ss_pred HHHHhhccCCCCccccCcCCcccCChhHHhhh--h--hcccCccccccCCccccCcccccccChhHHHhhhhhccccccc
Q 000433 835 PLAIAGRSEDEKTHKCKICSQVFLHDQELGVH--W--MDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFV 910 (1513)
Q Consensus 835 L~~H~r~H~~eKpykC~~CgK~F~s~s~L~~H--~--~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~ 910 (1513)
|..+.......+++.|.+|.+.|.....|..| + ...+.+. +||.|+.|++.|.+...|..|++.| ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----kPy~C~~Cgk~Fss~s~L~~H~r~h--~~-- 98 (128)
T PHA00733 28 LKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAV-----SPYVCPLCLMPFSSSVSLKQHIRYT--EH-- 98 (128)
T ss_pred hhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCC-----CCccCCCCCCcCCCHHHHHHHHhcC--Cc--
Confidence 44444445567889999999999887776665 1 1122334 8999999999999999999999876 22
Q ss_pred cccCccccccCCCccCCchhhhhhhhhccc
Q 000433 911 EQCMLQQCIPCGSHFGNTEELWLHVQSVHA 940 (1513)
Q Consensus 911 ~~~kpykC~~Cgk~F~sks~L~~H~~~vH~ 940 (1513)
+|.|..|++.|.....|..|+...|.
T Consensus 99 ----~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 ----SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ----CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 78999999999999999999888775
No 28
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.45 E-value=4.6e-08 Score=113.90 Aligned_cols=181 Identities=12% Similarity=0.078 Sum_probs=107.0
Q ss_pred ccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhcccccccc---------------
Q 000433 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE--------------- 911 (1513)
Q Consensus 847 pykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~--------------- 911 (1513)
-|.|.+|...|.+...|.+| +-.---. -.|+|++|+|.|....+|..|.|.|.......
T Consensus 267 dyiCqLCK~kYeD~F~LAQH-rC~RIV~-----vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ra 340 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQH-RCPRIVH-----VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRA 340 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhc-cCCeeEE-----eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhh
Confidence 38899999999999999999 3322211 34899999999999999999999886532211
Q ss_pred ------------ccCccccccCCCccCCchhhhhhhhhcccccccchh-------hhhccccccCCCCCccccCCChhhH
Q 000433 912 ------------QCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSE-------VAQQHNQSVGEDSPKKLELGYSASV 972 (1513)
Q Consensus 912 ------------~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~-------~~k~k~~~C~~C~~~~~~f~~~s~L 972 (1513)
.+..|.|.+|++.|.++..|++|+...|........ ......+-+..+ ...+.....-
T Consensus 341 e~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~---a~h~~a~~~~ 417 (500)
T KOG3993|consen 341 EVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAV---ATHSSASDSH 417 (500)
T ss_pred hhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccc---cccccccccc
Confidence 124699999999999999999996654443200000 000000111111 1111100000
Q ss_pred HhhhhhcCC-cceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccc-ccc
Q 000433 973 ENHSENLGS-IRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPR-FKK 1042 (1513)
Q Consensus 973 ~~H~r~Htg-eKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r-~H~ 1042 (1513)
-.|...+.+ .....|++||-.+.++..-.. +.+.-.. +.-|.|.+|...|.+..+|.+|+. -|.
T Consensus 418 g~~vl~~a~sael~~pp~~~~ppsss~~sgg-~~rlg~~-----~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 418 GDEVLYVAGSAELELPPYDGSPPSSSGSSGG-YGRLGIA-----EQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred ccceeeeeccccccCCCCCCCCcccCCCCCc-cccccch-----hhccccccchHhhhcCcchHhHhhhcCh
Confidence 001111111 122457788877777665555 3322222 457888888888888888888884 343
No 29
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.27 E-value=2.1e-07 Score=114.50 Aligned_cols=126 Identities=33% Similarity=0.523 Sum_probs=93.6
Q ss_pred eeeec-CCCCCCCCCCCCccccccceeeEEEEecCCCCccccccccccCCcEEEEEcCeeecHHHHHHHhcccCCCC--C
Q 000433 1354 LIYEC-NHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--C 1430 (1513)
Q Consensus 1354 ~IyEC-n~~C~C~~~C~NRvvQ~g~~~~LeVfrT~~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~y~~~~--~ 1430 (1513)
..+|| +..|.+...|.|+-.-...... ..+ +|..+|.+| +|++++..+...|........ .
T Consensus 288 ~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~ 351 (463)
T KOG1081|consen 288 LAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKESDLVD 351 (463)
T ss_pred hhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhccchhh
Confidence 34555 6788888889888653332222 222 888999999 899999998776654422221 1
Q ss_pred ceeEeeccccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecC
Q 000433 1431 GYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAI 1509 (1513)
Q Consensus 1431 ~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDY 1509 (1513)
.|+..+.. ...||+..+||.+||+||||+||+..+.+.+. +..++++||.++|++|||| |+|
T Consensus 352 ~~~~~~e~-------------~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~----~~t~~~~~a~~~i~~g~e~t~~~ 414 (463)
T KOG1081|consen 352 FYMVFIQK-------------DRIIDAGPKGNYSRFLNHSCQPNVETEKWQVI----GDTRVGLFAPRQIEAGEELTFNY 414 (463)
T ss_pred hhhhhhhc-------------ccccccccccchhhhhcccCCCceeechhhee----cccccccccccccccchhhhhee
Confidence 12222221 12799999999999999999999999888777 8899999999999999999 999
Q ss_pred CCC
Q 000433 1510 NLS 1512 (1513)
Q Consensus 1510 n~s 1512 (1513)
+++
T Consensus 415 n~~ 417 (463)
T KOG1081|consen 415 NGN 417 (463)
T ss_pred ecc
Confidence 975
No 30
>PHA02768 hypothetical protein; Provisional
Probab=98.11 E-value=6.3e-07 Score=78.45 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=20.7
Q ss_pred eeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhh
Q 000433 985 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGR 1034 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L 1034 (1513)
|+|+.||+.|...++|.. |+++|+. +|+|..|++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~-H~r~H~k-------~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMIT-HLRKHNT-------NLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHH-HHHhcCC-------cccCCcccceeccccee
Confidence 455555555555555555 4444442 44555555555544444
No 31
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.10 E-value=1.4e-06 Score=102.01 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=111.6
Q ss_pred ccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCC
Q 000433 881 GYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDS 960 (1513)
Q Consensus 881 pYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~ 960 (1513)
.|.|..|...|.....|.+|.-..--.. .|+|+.|+|.|.-..+|..| ++.|...-.... .+..+
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~v------EYrCPEC~KVFsCPANLASH-RRWHKPR~eaa~--------a~~~P 331 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHV------EYRCPECDKVFSCPANLASH-RRWHKPRPEAAK--------AGSPP 331 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEe------eecCCcccccccCchhhhhh-hcccCCchhhhh--------cCCCC
Confidence 3999999999999999999974332222 59999999999999999999 889974410000 01111
Q ss_pred CccccCCChhhHHhhhh--hcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCC-----------------------
Q 000433 961 PKKLELGYSASVENHSE--NLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVN----------------------- 1015 (1513)
Q Consensus 961 ~~~~~f~~~s~L~~H~r--~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~----------------------- 1015 (1513)
.+.. -......++-.| -...+..|.|.+|+|+|.++..|++ |+.+|......+
T Consensus 332 ~k~~-~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK-Hqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~ 409 (500)
T KOG3993|consen 332 PKQA-VETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK-HQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVAT 409 (500)
T ss_pred hhhh-hhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH-hHHhhhccccchhcccCcchhhccccccccccccc
Confidence 0000 000000111111 1123358999999999999999999 666664311000
Q ss_pred ------------------CCCcccCCCCcccCChhhhhcccccccCCCccccCccCCcCCChHHHHhhccc
Q 000433 1016 ------------------SRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTLKP 1068 (1513)
Q Consensus 1016 ------------------eKpykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~CgksFs~~~~L~kH~ks 1068 (1513)
.--..|+.|+-.+.++..--.|.|.-..+..|.|.+|--.|.+...|.+|...
T Consensus 410 h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 410 HSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred ccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence 12234666776677766666666666666778899999999988888888663
No 32
>PHA02768 hypothetical protein; Provisional
Probab=98.04 E-value=2.3e-06 Score=74.93 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=41.2
Q ss_pred CcccCCCCcccCChhhhhcccccccCCCccccCccCCcCCChHHHHh
Q 000433 1018 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQ 1064 (1513)
Q Consensus 1018 pykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~CgksFs~~~~L~k 1064 (1513)
-|+|+.||+.|++.++|..||++|+ ++|+|..|++.|.+.+.|+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence 5899999999999999999999999 79999999999998777654
No 33
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=97.81 E-value=1e-05 Score=93.42 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred CCCccccccccccCCcEEEEEcCeeecHHHHHHHhcc-cCCCCCceeEeeccccccccccccCceeEEEeccccCCcccc
Q 000433 1388 NKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSR-YGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRF 1466 (1513)
Q Consensus 1388 ~kGwGVrA~~~I~kGtfI~EY~GEVit~~ea~~R~~~-y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRF 1466 (1513)
..|--|.+++.+.+|+=|-..+|-|..-.+++++.-. .+..+-+-||....+ -..+++ ..|+|
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~----------caqLwL------GPaaf 199 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR----------CAQLWL------GPAAF 199 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc----------hhhhee------ccHHh
Confidence 4677788999999999999999998776667666322 222222333333221 012333 56899
Q ss_pred ccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCCC
Q 000433 1467 INHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLSL 1513 (1513)
Q Consensus 1467 INHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s~ 1513 (1513)
|||-|.|||.+... +..++.+-++|||+||||| ..|+-.|
T Consensus 200 INHDCrpnCkFvs~-------g~~tacvkvlRDIePGeEITcFYgs~f 240 (453)
T KOG2589|consen 200 INHDCRPNCKFVST-------GRDTACVKVLRDIEPGEEITCFYGSGF 240 (453)
T ss_pred hcCCCCCCceeecC-------CCceeeeehhhcCCCCceeEEeecccc
Confidence 99999999997432 5567889999999999999 6666443
No 34
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.70 E-value=1.7e-05 Score=59.60 Aligned_cols=24 Identities=21% Similarity=0.654 Sum_probs=16.1
Q ss_pred HHhhhhhcCCcceeeccccCcccC
Q 000433 972 VENHSENLGSIRKFICRFCGLKFD 995 (1513)
Q Consensus 972 L~~H~r~HtgeKpykC~~CgKsF~ 995 (1513)
|..|+++|++++||+|++|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 566666666666666666666664
No 35
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.69 E-value=3.2e-05 Score=93.56 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=82.0
Q ss_pred ceeeEEEEec--CCCCccccccccccCCcEEEEEcCee-ecHHHHHHHhcccCCCCCceeEeeccccccccccccCceeE
Q 000433 1377 VRVKLEVFKT--ENKGWAVRAGQAILRGTFVCEYIGEV-LDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRY 1453 (1513)
Q Consensus 1377 ~~~~LeVfrT--~~kGwGVrA~~~I~kGtfI~EY~GEV-it~~ea~~R~~~y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~ 1453 (1513)
+...|.|+.+ ...|.||++...|++|+--+-|.|++ ++..+ ...+..|++.+-.. +..-+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~--------~~~n~~y~W~I~~~---------d~~~~ 88 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS--------KSANNRYMWEIFSS---------DNGYE 88 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc--------ccccCcceEEEEeC---------CCceE
Confidence 5667788776 45789999999999999999999997 22111 11123455555431 02358
Q ss_pred EEeccc--cCCccccccCCCC---CCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCCCCC
Q 000433 1454 VIDATK--YGNVSRFINHSCF---PNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAINLSL 1513 (1513)
Q Consensus 1454 ~IDA~~--~GNvaRFINHSC~---PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn~s~ 1513 (1513)
+||++. ..|+.||+|=+++ -|+.+... -..|.+.|+|+|++|||| +.|+=+|
T Consensus 89 ~iDg~d~~~sNWmRYV~~Ar~~eeQNL~A~Q~--------~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 89 YIDGTDEEHSNWMRYVNSARSEEEQNLLAFQI--------GENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred EeccCChhhcceeeeecccCChhhhhHHHHhc--------cCceEEEecccCCCCCeEEEEeccch
Confidence 999988 7899999999987 68776432 234889999999999999 8887654
No 36
>PHA00732 hypothetical protein
Probab=97.35 E-value=0.00013 Score=69.31 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=26.1
Q ss_pred eeeccccCcccCChhHHHHHHHh-hccCCCCCCCCCcccCCCCcccCChhhhhccccccc
Q 000433 984 KFICRFCGLKFDLLPDLGRHHQA-AHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 984 pykC~~CgKsF~sks~L~rHHqr-vHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
||+|+.||+.|.+...|.+ |++ .|++ +.|+.|++.|. .|..|++.+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~-H~r~~H~~--------~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQ-HARRNHTL--------TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHH-HhhcccCC--------CccCCCCCEeC---ChhhhhcccC
Confidence 4566666666666666666 444 3432 35666666665 3555554443
No 37
>PHA00616 hypothetical protein
Probab=97.31 E-value=5.5e-05 Score=63.52 Aligned_cols=33 Identities=3% Similarity=-0.224 Sum_probs=19.2
Q ss_pred CcccCCCCcccCChhhhhcccccccCCCccccC
Q 000433 1018 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYR 1050 (1513)
Q Consensus 1018 pykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~ 1050 (1513)
||+|+.||+.|..++.|.+|++.|||++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 455666666666666666666666655555553
No 38
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.28 E-value=0.00015 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=16.1
Q ss_pred HHHHHHHhhccCCCCCCCCCcccCCCCcccC
Q 000433 999 DLGRHHQAAHMGPNLVNSRPHKKGIRFYAYK 1029 (1513)
Q Consensus 999 ~L~rHHqrvHtge~~~~eKpykC~~CgK~F~ 1029 (1513)
+|.+ |+++|+| ++||.|+.|+++|.
T Consensus 1 ~l~~-H~~~H~~-----~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRR-HMRTHTG-----EKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHH-HHHHHSS-----SSSEEESSSSEEES
T ss_pred CHHH-HhhhcCC-----CCCCCCCCCcCeeC
Confidence 3556 5666666 66666666666665
No 39
>PHA00732 hypothetical protein
Probab=97.16 E-value=0.00022 Score=67.84 Aligned_cols=46 Identities=11% Similarity=-0.099 Sum_probs=39.3
Q ss_pred CcccCCCCcccCChhhhhccccc-ccCCCccccCccCCcCCChHHHHhhcccC
Q 000433 1018 PHKKGIRFYAYKLKSGRLSRPRF-KKGLGAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1513)
Q Consensus 1018 pykC~~CgK~F~~ks~L~~H~r~-H~geKpy~C~~CgksFs~~~~L~kH~ksH 1069 (1513)
||.|+.|++.|.+...|..|++. |+ ++.|+.|++.|.+ +..|.+++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~~ 47 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYSQ 47 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhccc
Confidence 68999999999999999999985 65 4689999999984 66676655
No 40
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.02 E-value=0.00047 Score=60.86 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred eeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccC
Q 000433 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKG 1043 (1513)
Q Consensus 984 pykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~g 1043 (1513)
.|.|++|++ ..+...|..|....|..+ .+.+.|++|...+. .+|..|+..+++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~----~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSE----SKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCC----CCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 489999999 456788999888899884 46799999998765 489999977663
No 41
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.98 E-value=0.00058 Score=60.30 Aligned_cols=52 Identities=27% Similarity=0.587 Sum_probs=33.6
Q ss_pred ccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhcc
Q 000433 847 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 905 (1513)
Q Consensus 847 pykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh 905 (1513)
.|.|+.|++ ..+...|..|....|..+. +.+.|++|...+. .+|..|+..+|
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~----~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSES----KNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCC----CCccCCCchhhhh--hHHHHHHHHhc
Confidence 367777777 3445667777766776652 4577777776544 36777776655
No 42
>PHA00616 hypothetical protein
Probab=96.85 E-value=0.00041 Score=58.41 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=31.0
Q ss_pred eeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCC
Q 000433 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGI 1023 (1513)
Q Consensus 984 pykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~ 1023 (1513)
||+|..||+.|..+++|.+ |++.|+| ++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~-H~r~~hg-----~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIE-HLLSVHK-----QNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHH-HHHHhcC-----CCccceeE
Confidence 6999999999999999999 7899999 78888874
No 43
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.61 E-value=0.0011 Score=75.82 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=43.0
Q ss_pred cceeeccc--cCcccCChhHHHHHHHhhccCCCC-------------CCCCCcccCCCCcccCChhhhhccc
Q 000433 982 IRKFICRF--CGLKFDLLPDLGRHHQAAHMGPNL-------------VNSRPHKKGIRFYAYKLKSGRLSRP 1038 (1513)
Q Consensus 982 eKpykC~~--CgKsF~sks~L~rHHqrvHtge~~-------------~~eKpykC~~CgK~F~~ks~L~~H~ 1038 (1513)
+|||+|++ |.|.|+....|+-|.+--|..+.+ .+.|||.|++|+|+|.....|+.|+
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 49999976 999999999999976656643221 1257888888888888888888775
No 44
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.87 E-value=0.0035 Score=60.90 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=20.4
Q ss_pred ccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCc
Q 000433 849 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNT 928 (1513)
Q Consensus 849 kC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sk 928 (1513)
+|..|+..|.+...|..|+...|.-. .+ ....+.....+..+++..... .+.|..|++.|.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~-----~~-----~~~~l~~~~~~~~~~~~~~~~-------~~~C~~C~~~f~s~ 63 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFD-----IP-----DQKYLVDPNRLLNYLRKKVKE-------SFRCPYCNKTFRSR 63 (100)
T ss_dssp ----------------------------------------------------------S-------SEEBSSSS-EESSH
T ss_pred Cccccccccccccccccccccccccc-----cc-----cccccccccccccccccccCC-------CCCCCccCCCCcCH
Confidence 58999999999999999977777654 11 222233444455554432221 58899999999999
Q ss_pred hhhhhhhhhc
Q 000433 929 EELWLHVQSV 938 (1513)
Q Consensus 929 s~L~~H~~~v 938 (1513)
..|..||+..
T Consensus 64 ~~l~~Hm~~~ 73 (100)
T PF12756_consen 64 EALQEHMRSK 73 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHcCc
Confidence 9999998754
No 45
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=95.76 E-value=0.0038 Score=71.52 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=41.5
Q ss_pred CCccccCc--CCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhccccccccccCccccccCC
Q 000433 845 EKTHKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCG 922 (1513)
Q Consensus 845 eKpykC~~--CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cg 922 (1513)
+|||+|++ |.|.|++...|+-|+..-|... +...=+ .-..|. .+..+.+||.|++|+
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~-----~~~~~p----------~p~~~~------~F~~~~KPYrCevC~ 405 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQ-----KLHENP----------SPEKMN------IFSAKDKPYRCEVCD 405 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCc-----ccCCCC----------Cccccc------cccccCCceeccccc
Confidence 59999986 9999999999999955445322 111100 000000 001122477777777
Q ss_pred CccCCchhhhhh
Q 000433 923 SHFGNTEELWLH 934 (1513)
Q Consensus 923 k~F~sks~L~~H 934 (1513)
|+|++-..|+-|
T Consensus 406 KRYKNlNGLKYH 417 (423)
T COG5189 406 KRYKNLNGLKYH 417 (423)
T ss_pred hhhccCccceec
Confidence 777777777777
No 46
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.75 E-value=0.0028 Score=45.83 Aligned_cols=18 Identities=33% Similarity=0.818 Sum_probs=10.2
Q ss_pred eeccccCcccCChhHHHH
Q 000433 985 FICRFCGLKFDLLPDLGR 1002 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~r 1002 (1513)
|+|+.|++.|.++..|.+
T Consensus 1 y~C~~C~~~f~~~~~l~~ 18 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKR 18 (23)
T ss_dssp EEETTTTEEESSHHHHHH
T ss_pred CCCCCCCCccCCHHHHHH
Confidence 455555555555555555
No 47
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.64 E-value=0.0063 Score=59.12 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=16.7
Q ss_pred ccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhhcCCcceeeccccCcccCC
Q 000433 917 QCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDL 996 (1513)
Q Consensus 917 kC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~HtgeKpykC~~CgKsF~s 996 (1513)
+|..|+..|.+...|..||...|...+. . ...+.....+..+.+... ...+.|..|++.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-------------~----~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s 62 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-------------D----QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRS 62 (100)
T ss_dssp ------------------------------------------------------------------SSEEBSSSS-EESS
T ss_pred Cccccccccccccccccccccccccccc-------------c----cccccccccccccccccc-CCCCCCCccCCCCcC
Confidence 4889999999999999998888863310 0 011111222223322211 125788888888888
Q ss_pred hhHHHHHHHhh
Q 000433 997 LPDLGRHHQAA 1007 (1513)
Q Consensus 997 ks~L~rHHqrv 1007 (1513)
...|.. |++.
T Consensus 63 ~~~l~~-Hm~~ 72 (100)
T PF12756_consen 63 REALQE-HMRS 72 (100)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHcC
Confidence 888888 4443
No 48
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.53 E-value=0.0072 Score=43.70 Aligned_cols=23 Identities=22% Similarity=-0.042 Sum_probs=21.5
Q ss_pred cccCCCCcccCChhhhhcccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRFK 1041 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~H 1041 (1513)
|.|+.|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999875
No 49
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.81 E-value=0.012 Score=44.21 Aligned_cols=24 Identities=8% Similarity=-0.191 Sum_probs=11.9
Q ss_pred cccCCCCcccCChhhhhccccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
|.|..|++.|.+...|..|++.|.
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCccCCccCChhHHHHHhHHhc
Confidence 445555555555555555554443
No 50
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.78 E-value=0.015 Score=41.82 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=9.7
Q ss_pred ccCcccccccChhHHHhhhhhc
Q 000433 883 ACAICLDSFTNKKVLESHVQER 904 (1513)
Q Consensus 883 kC~~CgKsF~sks~L~~H~r~H 904 (1513)
.|++|++.|.+...|..|++.|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHhh
Confidence 4444555555555555554443
No 51
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.71 E-value=0.01 Score=42.65 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=8.4
Q ss_pred eeccccCcccCChhHHHH
Q 000433 985 FICRFCGLKFDLLPDLGR 1002 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~r 1002 (1513)
|.|++|++.|.+...|.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQ 18 (24)
T ss_dssp EE-SSTS-EESSHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHH
Confidence 445555555555555555
No 52
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.041 Score=70.21 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=42.0
Q ss_pred ccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccc---------cccChhHHHhhhhhccc-cccccccCcccc
Q 000433 849 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLD---------SFTNKKVLESHVQERHH-VQFVEQCMLQQC 918 (1513)
Q Consensus 849 kC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgK---------sF~sks~L~~H~r~Hh~-ek~~~~~kpykC 918 (1513)
.|..| -.|.+...|+.|+...|. .+.|.+|-. ...+...|..|++.--. ++... .--.|
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~--------~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~r--Ghp~C 185 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHK--------LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCR--GHPLC 185 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhh--------hhccccccccceeeeeeeehehHHHHHHHHhcCCCcccccc--CCccc
Confidence 46666 666677777777555563 345555432 22344556666543222 11000 01246
Q ss_pred ccCCCccCCchhhhhhhhhcc
Q 000433 919 IPCGSHFGNTEELWLHVQSVH 939 (1513)
Q Consensus 919 ~~Cgk~F~sks~L~~H~~~vH 939 (1513)
..|...|.....|.+|++..|
T Consensus 186 ~~C~~~fld~~el~rH~~~~h 206 (669)
T KOG2231|consen 186 KFCHERFLDDDELYRHLRFDH 206 (669)
T ss_pred hhhhhhhccHHHHHHhhccce
Confidence 667777777777777755444
No 53
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.28 E-value=0.022 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=12.8
Q ss_pred cccCcccccccChhHHHhhhhhcc
Q 000433 882 YACAICLDSFTNKKVLESHVQERH 905 (1513)
Q Consensus 882 YkC~~CgKsF~sks~L~~H~r~Hh 905 (1513)
|.|..|++.|.+...|..|++.|+
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCccCCccCChhHHHHHhHHhc
Confidence 455555555555555555555443
No 54
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.041 Score=70.21 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=17.4
Q ss_pred CccccCcccccccChhHHHhhhhhccc
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHH 906 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ 906 (1513)
..-.|.+| -.|.....|+.|+...|.
T Consensus 114 ~~~~~~~c-~~~~s~~~Lk~H~~~~H~ 139 (669)
T KOG2231|consen 114 NKKECLHC-TEFKSVENLKNHMRDQHK 139 (669)
T ss_pred ccCCCccc-cchhHHHHHHHHHHHhhh
Confidence 34567777 667777777777765554
No 55
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=93.15 E-value=0.02 Score=51.78 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=30.5
Q ss_pred CCC-CCcccc----------CcccccccCCCcCCc-cccccceeeeccc
Q 000433 1184 HLE-PLPSVS----------AGIRSSDSSDFVNNQ-WEVDECHCIIDSR 1220 (1513)
Q Consensus 1184 p~~-~~~~~~----------~~~k~v~~~~p~~~~-w~~~e~~~~l~~~ 1220 (1513)
||+ |++.|| +.++.|+|++|||.. ++|.|++.||...
T Consensus 1 PL~~Pll~gw~R~~~~~~~~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 1 PLHTPLLCGFQRMKYRARVGKVKKHVIYKAPCGRSLRNMSEVHRYLRET 49 (60)
T ss_pred CcccccccCeEEEEEeccCCCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence 666 888888 256789999999999 9999999877643
No 56
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.04 E-value=0.037 Score=74.00 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=104.8
Q ss_pred ccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhcccccccc-----------------
Q 000433 849 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE----------------- 911 (1513)
Q Consensus 849 kC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~----------------- 911 (1513)
.|..|+..|.+...+.-|+...|... +.|+|+.|+..|+....|..|||..|.+....
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~ 512 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVY 512 (1406)
T ss_pred cccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccc
Confidence 46667777888888888877777776 88999999999999999999999855432111
Q ss_pred --ccCccccccCCCccCCchhhhhhhhhc-ccccccchhhhhc-----ccc-ccCCCCCccccCCChhhHHhhhhhcCCc
Q 000433 912 --QCMLQQCIPCGSHFGNTEELWLHVQSV-HAIDFKMSEVAQQ-----HNQ-SVGEDSPKKLELGYSASVENHSENLGSI 982 (1513)
Q Consensus 912 --~~kpykC~~Cgk~F~sks~L~~H~~~v-H~~ef~~~~~~k~-----k~~-~C~~C~~~~~~f~~~s~L~~H~r~Htge 982 (1513)
.-++|.|..|...+.....|-.|++.. |..+......... ... .+..+|- ....+..+.... -..+
T Consensus 513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~-~ag~~~~ags~~----pktk 587 (1406)
T KOG1146|consen 513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPE-EAGLGPSAGSSG----PKTK 587 (1406)
T ss_pred cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcc-cccCCCCCCCCC----CCCC
Confidence 116899999999999999999998753 2211000000000 000 0111110 000000000000 0011
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccc
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 1041 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H 1041 (1513)
-++.|..|++--.-..+|+.|....|.- .-|-.|-.|.-.+.....+..|.+.+
T Consensus 588 P~~~C~vc~yetniarnlrihmtss~~s-----~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 588 PSWRCEVCSYETNIARNLRIHMTASPSS-----SPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred CCcchhhhcchhhhhhccccccccCCCC-----CChHHHhhhcchhhccccccCcCCCC
Confidence 2367777777766666666633233332 33466777777777777777766666
No 57
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=92.85 E-value=0.04 Score=47.82 Aligned_cols=31 Identities=6% Similarity=-0.108 Sum_probs=17.8
Q ss_pred CCCcccCCCCcccCChhhhhcccccccCCCc
Q 000433 1016 SRPHKKGIRFYAYKLKSGRLSRPRFKKGLGA 1046 (1513)
Q Consensus 1016 eKpykC~~CgK~F~~ks~L~~H~r~H~geKp 1046 (1513)
+.|-.|++|+..+.+..+|++|+..+|+.||
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 5677777777777777777777766666554
No 58
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=92.72 E-value=0.062 Score=71.99 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=110.4
Q ss_pred ccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCc
Q 000433 883 ACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPK 962 (1513)
Q Consensus 883 kC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~ 962 (1513)
.|..|+..|..+..+..|+..-+... +.|+|+.|+..|+....|..||+.+|..- . . ..|
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~-~--------~---~~c--- 497 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPES-Q--------S---AYC--- 497 (1406)
T ss_pred cccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhccccccccc-c--------h---hHh---
Confidence 35667777777777877776555443 48999999999999999999999888632 0 0 111
Q ss_pred cccCCChhhHHhhhhhc------CCcceeeccccCcccCChhHHHHHHHhh-ccCC------------------------
Q 000433 963 KLELGYSASVENHSENL------GSIRKFICRFCGLKFDLLPDLGRHHQAA-HMGP------------------------ 1011 (1513)
Q Consensus 963 ~~~f~~~s~L~~H~r~H------tgeKpykC~~CgKsF~sks~L~rHHqrv-Htge------------------------ 1011 (1513)
+ .-..|.+.- .+-++|.|..|..+|..+.+|.+|.+.. |..+
T Consensus 498 -~------~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P 570 (1406)
T KOG1146|consen 498 -K------AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVP 570 (1406)
T ss_pred -H------hccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCc
Confidence 0 111122211 2337899999999999999999964432 2110
Q ss_pred -----------CCCC-CCCcccCCCCcccCChhhhhcccc-cccCCCccccCccCCcCCChHHHHhhcccC
Q 000433 1012 -----------NLVN-SRPHKKGIRFYAYKLKSGRLSRPR-FKKGLGAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1513)
Q Consensus 1012 -----------~~~~-eKpykC~~CgK~F~~ks~L~~H~r-~H~geKpy~C~~CgksFs~~~~L~kH~ksH 1069 (1513)
...+ .-.+.|.+|++.-.-..+|+.||. .|+..-|.-|-.|+-.+..-..+..+.+-+
T Consensus 571 ~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 571 EEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred ccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence 0011 235899999999999999999994 455445577888888887777777777755
No 59
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.25 E-value=0.12 Score=62.30 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=39.9
Q ss_pred cCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccCCCccccCccCCc
Q 000433 990 CGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRG 1055 (1513)
Q Consensus 990 CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~Cgks 1055 (1513)
|-..+.....+.. |...|.... ...+.+..|.+.|.....+..|++.|....++.|..++..
T Consensus 394 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (467)
T COG5048 394 CIRNFKRDSNLSL-HIITHLSFR---PYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSF 455 (467)
T ss_pred hhhhhcccccccc-ccccccccC---CcCCCCCcchhhccCcccccccccccccCCceeecccccc
Confidence 5566666666666 555565511 2356677788888888888888888776666665554443
No 60
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.52 E-value=0.082 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=11.7
Q ss_pred eeccccCcccCChhHHHHHHHhhc
Q 000433 985 FICRFCGLKFDLLPDLGRHHQAAH 1008 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~rHHqrvH 1008 (1513)
|+|+.|++.|.....|.. |++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~-H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKE-HMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHH-HHHHh
Confidence 345555555555555555 34444
No 61
>PRK04860 hypothetical protein; Provisional
Probab=91.06 E-value=0.12 Score=55.76 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=26.7
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCCh
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLK 1031 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~k 1031 (1513)
-+|.|. |++ ....+++ |.++|++ +++|.|..|+..|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rr-H~ri~~g-----~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRR-HNRVVRG-----EAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHH-HHHHhcC-----CccEECCCCCceeEEe
Confidence 367776 776 5566666 6777777 6777777777776543
No 62
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.01 E-value=0.15 Score=36.97 Aligned_cols=24 Identities=17% Similarity=-0.100 Sum_probs=22.0
Q ss_pred cccCCCCcccCChhhhhccccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
|.|+.|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999775
No 63
>PRK04860 hypothetical protein; Provisional
Probab=90.90 E-value=0.084 Score=57.04 Aligned_cols=39 Identities=10% Similarity=-0.119 Sum_probs=35.2
Q ss_pred CCcccCCCCcccCChhhhhcccccccCCCccccCccCCcCCCh
Q 000433 1017 RPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGM 1059 (1513)
Q Consensus 1017 KpykC~~CgK~F~~ks~L~~H~r~H~geKpy~C~~CgksFs~~ 1059 (1513)
-+|.|. |++ ....+++|.++|+++++|.|..|+..|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 479998 998 888899999999999999999999998644
No 64
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=89.79 E-value=0.3 Score=47.20 Aligned_cols=60 Identities=18% Similarity=0.474 Sum_probs=47.7
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCCc
Q 000433 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFPQ 220 (1513)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (1513)
-+|+|.+| -|--|+-+...+.+... .+......|.|.||+ +++|.||+---|.+..++-.
T Consensus 6 lVwaK~~g~pwWPa~V~~~~~~~~~~---~~~~~~~~~~V~Ffg-~~~~~wv~~~~l~pf~~~~~ 66 (87)
T cd05162 6 LVWAKMKGYPWWPALVVDPPKDSKKA---KKKAKEGKVLVLFFG-DKTFAWVGAERLKPFTEHKE 66 (87)
T ss_pred EEEEeCCCCCCCCEEEccccccchhh---hccCCCCEEEEEEeC-CCcEEEeCccceeeccchHH
Confidence 48999999 78888888777776543 233345689999999 99999999999988887653
No 65
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=89.64 E-value=0.23 Score=59.87 Aligned_cols=167 Identities=17% Similarity=0.213 Sum_probs=105.3
Q ss_pred CccccCcCCcccCChhHHhhhhhc--ccCccccccCCccccC--cccccccChhHHHhhhhhccccccccccCcccccc-
Q 000433 846 KTHKCKICSQVFLHDQELGVHWMD--NHKKEAQWLFRGYACA--ICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP- 920 (1513)
Q Consensus 846 KpykC~~CgK~F~s~s~L~~H~~r--~Htge~~~~~KpYkC~--~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~- 920 (1513)
.++.|..|...|.....|..| .+ .|.++. .+++.|+ .|++.|.....+..|...|.+.. ++.|..
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~-~~~~~h~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 357 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRH-LRSVNHSGES---LKPFSCPYSLCGKLFSRNDALKRHILLHTSIS------PAKEKLL 357 (467)
T ss_pred cCCCCccccCCcccccccccc-cccccccccc---CCceeeeccCCCccccccccccCCcccccCCC------ccccccc
Confidence 578999999999999999999 66 787762 2689999 79999999999999999999886 455543
Q ss_pred -CCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCCChhhHHhhhhhcCCcc--eeeccccCcccCCh
Q 000433 921 -CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIR--KFICRFCGLKFDLL 997 (1513)
Q Consensus 921 -Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~~~s~L~~H~r~HtgeK--pykC~~CgKsF~sk 997 (1513)
|...+.....-..+ ...+... .........+.. ..+...+.....+..|...|...+ .+.|..|.+.|...
T Consensus 358 ~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (467)
T COG5048 358 NSSSKFSPLLNNEPP-QSLQQYK----DLKNDKKSETLS-NSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431 (467)
T ss_pred cCccccccccCCCCc-cchhhcc----CccCCccccccc-cchhhhhccccccccccccccccCCcCCCCCcchhhccCc
Confidence 44444333322111 1011000 000000111110 011333445556667777777665 56788999999999
Q ss_pred hHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhh
Q 000433 998 PDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRL 1035 (1513)
Q Consensus 998 s~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~ 1035 (1513)
..|.. |++.|.. ..++.|..+ +.|.....+.
T Consensus 432 ~~~~~-~~~~~~~-----~~~~~~~~~-~~~~~~~~~~ 462 (467)
T COG5048 432 YNLIP-HKKIHTN-----HAPLLCSIL-KSFRRDLDLS 462 (467)
T ss_pred ccccc-ccccccc-----CCceeeccc-cccchhhhhh
Confidence 99998 8888887 445555444 3444444433
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.35 E-value=0.18 Score=58.81 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=70.3
Q ss_pred ccccc--CCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCC------ChhhHHhhhhhcCCc---c-
Q 000433 916 QQCIP--CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELG------YSASVENHSENLGSI---R- 983 (1513)
Q Consensus 916 ykC~~--Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~------~~s~L~~H~r~Htge---K- 983 (1513)
|.|+. |.........|+.|.+..|. .+.|..|-...+.|. ++..|..|...-..+ |
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~------------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKG 219 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHG------------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKG 219 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcC------------cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCC
Confidence 44543 44444445566666665553 334444433333333 244566665433222 1
Q ss_pred eeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcc-------cCChhhhhcccccccCCCccccCc--cC-
Q 000433 984 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA-------YKLKSGRLSRPRFKKGLGAVSYRI--RN- 1053 (1513)
Q Consensus 984 pykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~-------F~~ks~L~~H~r~H~geKpy~C~~--Cg- 1053 (1513)
.-.|.+|.+.|-.-..|.+|.+..|.. |.+|++. |..-..|..|.+.-| |.|.+ |.
T Consensus 220 HP~C~FC~~~FYdDDEL~~HcR~~HE~----------ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~ 285 (493)
T COG5236 220 HPLCIFCKIYFYDDDELRRHCRLRHEA----------CHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRV 285 (493)
T ss_pred CchhhhccceecChHHHHHHHHhhhhh----------hhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEec
Confidence 225888888888888888865555554 6666654 677777777775433 55533 21
Q ss_pred ---CcCCChHHHHhhcc
Q 000433 1054 ---RGAAGMKKRIQTLK 1067 (1513)
Q Consensus 1054 ---ksFs~~~~L~kH~k 1067 (1513)
..|.....|..|..
T Consensus 286 ~k~~vf~~~~el~~h~~ 302 (493)
T COG5236 286 GKCYVFPYHTELLEHLT 302 (493)
T ss_pred CcEEEeccHHHHHHHHH
Confidence 34566666777654
No 67
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=88.41 E-value=0.34 Score=47.83 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=49.0
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhcccccc
Q 000433 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIN 216 (1513)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1513)
-+|.|-+|- |=-|+=|...+-|-.-|++++......|.|.||+. ++|.|++--.+.+..
T Consensus 6 lVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~-~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 6 RVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPD-GDYYWVPNKDLKPLT 65 (93)
T ss_pred EEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCC-CcEEEEChhhcccCC
Confidence 389999994 66777777777888888888888899999999995 699999887777665
No 68
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=88.06 E-value=0.34 Score=57.89 Aligned_cols=53 Identities=11% Similarity=-0.055 Sum_probs=41.8
Q ss_pred CCCcccCCCCcccCChhhhhcccccccCC-----------------------CccccCccC---CcCCChHHHHhhccc
Q 000433 1016 SRPHKKGIRFYAYKLKSGRLSRPRFKKGL-----------------------GAVSYRIRN---RGAAGMKKRIQTLKP 1068 (1513)
Q Consensus 1016 eKpykC~~CgK~F~~ks~L~~H~r~H~ge-----------------------Kpy~C~~Cg---ksFs~~~~L~kH~ks 1068 (1513)
.-|-.|-.|++.|.+-..-..||..|||. ..+.|-.|+ +.|+++.+.++|+..
T Consensus 164 ~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 164 LIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred cCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 34567888888888888888888777765 237788888 999999999999873
No 69
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=87.72 E-value=0.28 Score=42.81 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=17.9
Q ss_pred CccccCcccccccChhHHHhhhhhccccc
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHHVQ 908 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ek 908 (1513)
.|-.|++|+..+.+..+|.+|+..+|+.+
T Consensus 23 ~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 23 QPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 66777777777777777777777777655
No 70
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=86.89 E-value=0.24 Score=36.47 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=12.4
Q ss_pred cccCCCCcccCChhhhhccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRF 1040 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~ 1040 (1513)
|.|.+|++.|.+...|+.|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 3455555555555555555543
No 71
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=86.81 E-value=0.21 Score=36.61 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=10.2
Q ss_pred cccCCCCcccCChhhhhccccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
|+|+.|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 34555555554 445555554443
No 72
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=86.50 E-value=0.27 Score=36.20 Aligned_cols=21 Identities=33% Similarity=0.773 Sum_probs=11.3
Q ss_pred ccCcccccccChhHHHhhhhh
Q 000433 883 ACAICLDSFTNKKVLESHVQE 903 (1513)
Q Consensus 883 kC~~CgKsF~sks~L~~H~r~ 903 (1513)
.|.+|++.|.+...|..|++.
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHCc
Confidence 455555555555555555543
No 73
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=84.96 E-value=0.55 Score=35.55 Aligned_cols=22 Identities=0% Similarity=-0.277 Sum_probs=16.8
Q ss_pred cccCCCCcccCChhhhhccccc
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRF 1040 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~ 1040 (1513)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6677888888888888777754
No 74
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=84.54 E-value=0.42 Score=42.07 Aligned_cols=25 Identities=32% Similarity=0.777 Sum_probs=21.9
Q ss_pred ceeeecCCCCCCCCCCCCccccccc
Q 000433 1353 YLIYECNHMCSCDRTCPNRVLQNGV 1377 (1513)
Q Consensus 1353 ~~IyECn~~C~C~~~C~NRvvQ~g~ 1377 (1513)
.+.+||+..|+|+..|.|+.+|+..
T Consensus 26 ~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 26 MLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred HHhhhcCCCCCCCcCccCcccccCc
Confidence 3568999999999999999999853
No 75
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=84.30 E-value=0.5 Score=34.64 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=10.0
Q ss_pred cccCcccccccChhHHHhhhhhcc
Q 000433 882 YACAICLDSFTNKKVLESHVQERH 905 (1513)
Q Consensus 882 YkC~~CgKsF~sks~L~~H~r~Hh 905 (1513)
|+|+.|+.... +..|.+|++.||
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 34555554444 445555554443
No 76
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.78 E-value=0.81 Score=53.67 Aligned_cols=74 Identities=34% Similarity=0.575 Sum_probs=56.2
Q ss_pred cccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccc-------cccChhHHHhhhhhccccccccccCcccccc
Q 000433 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLD-------SFTNKKVLESHVQERHHVQFVEQCMLQQCIP 920 (1513)
Q Consensus 848 ykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgK-------sF~sks~L~~H~r~Hh~ek~~~~~kpykC~~ 920 (1513)
-.|..|...|-+...|.+|++..|. .|.+|++ -|.+...|..|.+.-|- .|..
T Consensus 221 P~C~FC~~~FYdDDEL~~HcR~~HE----------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy----------~ct~ 280 (493)
T COG5236 221 PLCIFCKIYFYDDDELRRHCRLRHE----------ACHICDMVGPIRYQYFKSYEDLEAHFRNAHY----------CCTF 280 (493)
T ss_pred chhhhccceecChHHHHHHHHhhhh----------hhhhhhccCccchhhhhCHHHHHHHhhcCce----------EEEE
Confidence 3599999999999999999766663 3666654 48888999999875543 3422
Q ss_pred --C--C--CccCCchhhhhhhhhcccc
Q 000433 921 --C--G--SHFGNTEELWLHVQSVHAI 941 (1513)
Q Consensus 921 --C--g--k~F~sks~L~~H~~~vH~~ 941 (1513)
| + ..|.....|..|+.+.|..
T Consensus 281 qtc~~~k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 281 QTCRVGKCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred EEEecCcEEEeccHHHHHHHHHHHhhc
Confidence 3 2 3689999999999888864
No 77
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.34 E-value=0.5 Score=51.99 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=68.2
Q ss_pred CccccCc--ccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhcccccccchhhhhccccccC
Q 000433 880 RGYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVG 957 (1513)
Q Consensus 880 KpYkC~~--CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~ 957 (1513)
+.|.|++ |-..|........|..+.|+.. |..|.+.|.+...|..|+...|..-|
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~s---------Cs~C~r~~Pt~hLLd~HI~E~HDs~F-------------- 134 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGNS---------CSFCKRAFPTGHLLDAHILEWHDSLF-------------- 134 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccch---------hHHHHHhCCchhhhhHHHHHHHHHHH--------------
Confidence 4577877 7788888888888887777764 99999999999999999877774110
Q ss_pred CCCCccccCCChhhHHhhhhhcCCcceeec--cccCcccCChhHHHHHHHhhccC
Q 000433 958 EDSPKKLELGYSASVENHSENLGSIRKFIC--RFCGLKFDLLPDLGRHHQAAHMG 1010 (1513)
Q Consensus 958 ~C~~~~~~f~~~s~L~~H~r~HtgeKpykC--~~CgKsF~sks~L~rHHqrvHtg 1010 (1513)
...+-.|.-.|+| ..|+..|.+...-+.|..+.|.-
T Consensus 135 -----------------qa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 135 -----------------QALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred -----------------HHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence 0122334456888 56999999988888887788865
No 78
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=82.73 E-value=0.41 Score=37.91 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=27.0
Q ss_pred ccchhhhhhcCceeeeeecCCceEEEEee
Q 000433 533 RQCTAFIESKGRQCVRWANEGDVYCCVHL 561 (1513)
Q Consensus 533 ~~c~a~~~~kgrqc~r~a~~~~~ycc~h~ 561 (1513)
-+|.-||+.|.|.|.=.+..|..||--|+
T Consensus 2 ~~C~f~l~~K~R~C~m~~~~g~~fC~~H~ 30 (31)
T PF11722_consen 2 GRCEFFLPRKKRFCKMTRKPGSRFCGEHM 30 (31)
T ss_pred CcceEECCccccccCCeecCcCCccccCC
Confidence 37999999999999999999999999885
No 79
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=81.69 E-value=0.78 Score=34.72 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=12.5
Q ss_pred cccCcccccccChhHHHhhhhh
Q 000433 882 YACAICLDSFTNKKVLESHVQE 903 (1513)
Q Consensus 882 YkC~~CgKsF~sks~L~~H~r~ 903 (1513)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4455566666665555555543
No 80
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=81.26 E-value=2.1 Score=51.50 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=44.0
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCC------------------CCCcccCCCC---cccCChhhhhccccc
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVN------------------SRPHKKGIRF---YAYKLKSGRLSRPRF 1040 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~------------------eKpykC~~Cg---K~F~~ks~L~~H~r~ 1040 (1513)
-|-.|-+|++.|.+...-.. ||..|.|--.+. ..-|.|-.|+ +.|.+-...+.||+-
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~-HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLK-HMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHH-HHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 35779999999999999999 565555511110 4568899999 999999999999943
No 81
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=79.10 E-value=1.5 Score=51.69 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=13.4
Q ss_pred ccCCCCcccCChhhhhccc
Q 000433 1020 KKGIRFYAYKLKSGRLSRP 1038 (1513)
Q Consensus 1020 kC~~CgK~F~~ks~L~~H~ 1038 (1513)
.|-.|.-.|.....|..||
T Consensus 336 ~c~~cd~~F~~e~~l~~hm 354 (423)
T KOG2482|consen 336 RCAECDLSFWKEPGLLIHM 354 (423)
T ss_pred ccccccccccCcchhhhhc
Confidence 4566667777777777777
No 82
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.35 E-value=0.69 Score=50.93 Aligned_cols=86 Identities=24% Similarity=0.520 Sum_probs=66.6
Q ss_pred CccccCc--CCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhhhcccccccc----ccCcccc-
Q 000433 846 KTHKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE----QCMLQQC- 918 (1513)
Q Consensus 846 KpykC~~--CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~----~~kpykC- 918 (1513)
..|.|++ |.+.|........|.-..|+. .|..|.+.|.+...|..|+..-|..-+.. +.-.|+|
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl 148 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---------SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL 148 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---------hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4478876 888999988888885455554 59999999999999999997666421100 1126999
Q ss_pred -ccCCCccCCchhhhhhhhhccc
Q 000433 919 -IPCGSHFGNTEELWLHVQSVHA 940 (1513)
Q Consensus 919 -~~Cgk~F~sks~L~~H~~~vH~ 940 (1513)
+.|+..|.+...-..|+.+.|.
T Consensus 149 vEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 149 VEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred HHhhhhhhhhhhhhhhHHHHhcc
Confidence 5699999999999999998886
No 83
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=71.75 E-value=4.4 Score=47.96 Aligned_cols=51 Identities=2% Similarity=-0.263 Sum_probs=40.3
Q ss_pred cccCCCCcccCChhhhhcccccccCC---------------------------CccccCccCCcCCChHHHHhhcccC
Q 000433 1019 HKKGIRFYAYKLKSGRLSRPRFKKGL---------------------------GAVSYRIRNRGAAGMKKRIQTLKPL 1069 (1513)
Q Consensus 1019 ykC~~CgK~F~~ks~L~~H~r~H~ge---------------------------Kpy~C~~CgksFs~~~~L~kH~ksH 1069 (1513)
-.|-.|....-....|..||+.-|.- +.-.|-.|.-.|.....|..|+-.+
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 58999999999999999999543321 1245788999999999999998754
No 84
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=69.69 E-value=2 Score=48.26 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=36.6
Q ss_pred eccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhccc-cccc
Q 000433 986 ICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRP-RFKK 1042 (1513)
Q Consensus 986 kC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~-r~H~ 1042 (1513)
-|-+|++.|....-|.+| ++ .|-|+|.+|.|+..+--.|..|- ++|.
T Consensus 12 wcwycnrefddekiliqh-qk---------akhfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQH-QK---------AKHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeeecccccchhhhhhhh-hh---------hccceeeeehhhhccCCCceeehhhhhh
Confidence 388999999998888883 33 56788999999888888888875 5554
No 85
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=65.26 E-value=6.7 Score=40.01 Aligned_cols=63 Identities=17% Similarity=0.374 Sum_probs=45.8
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCC
Q 000433 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFP 219 (1513)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1513)
-+|.|=+|- |--|+-+...+=|..+.+..+....+.|.|.||..+.+|.||.---+.++.+.-
T Consensus 8 lVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~~~ 71 (110)
T cd05837 8 LVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKGSK 71 (110)
T ss_pred EEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCCch
Confidence 479999884 666666654444444444445555689999999999999999988888877654
No 86
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=60.62 E-value=5.6 Score=29.97 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=10.0
Q ss_pred ccCcccccccChhHHHhhhh
Q 000433 883 ACAICLDSFTNKKVLESHVQ 902 (1513)
Q Consensus 883 kC~~CgKsF~sks~L~~H~r 902 (1513)
.|+.||+.| ....|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455555555 4455555543
No 87
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=60.40 E-value=3.8 Score=32.48 Aligned_cols=25 Identities=28% Similarity=0.781 Sum_probs=16.4
Q ss_pred ccccCcccccccChhHHHhhhhhcc
Q 000433 881 GYACAICLDSFTNKKVLESHVQERH 905 (1513)
Q Consensus 881 pYkC~~CgKsF~sks~L~~H~r~Hh 905 (1513)
+|.|.+|++.|.+...+..|++...
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~ 27 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKK 27 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHH
Confidence 4667777777777777777765443
No 88
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=59.75 E-value=3.8 Score=46.15 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=34.4
Q ss_pred cCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhhhccc
Q 000433 884 CAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHA 940 (1513)
Q Consensus 884 C~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~~vH~ 940 (1513)
|-.|++.|....-|.+|++.. -|+|.+|.+...+--.|..|-..+|.
T Consensus 13 cwycnrefddekiliqhqkak----------hfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----------HFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeecccccchhhhhhhhhhhc----------cceeeeehhhhccCCCceeehhhhhh
Confidence 778888888888887776643 46788887777677777777666664
No 89
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=57.38 E-value=4.7 Score=31.95 Aligned_cols=22 Identities=0% Similarity=-0.185 Sum_probs=14.3
Q ss_pred CcccCCCCcccCChhhhhcccc
Q 000433 1018 PHKKGIRFYAYKLKSGRLSRPR 1039 (1513)
Q Consensus 1018 pykC~~CgK~F~~ks~L~~H~r 1039 (1513)
+|.|.+|++.|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4666666666666666666663
No 90
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=55.60 E-value=8.4 Score=45.97 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.1
Q ss_pred CccccCcccccccChhHHHhhhhhccccc
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHHVQ 908 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ek 908 (1513)
..|.|+.|++.=.+...|..|+...|.+.
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda 106 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEA 106 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCccc
Confidence 45666666666666666666666655554
No 91
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=54.21 E-value=8.7 Score=28.96 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=12.5
Q ss_pred eeccccCcccCChhHHHH
Q 000433 985 FICRFCGLKFDLLPDLGR 1002 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~r 1002 (1513)
..|+.||++| ....|.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~ 19 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEK 19 (25)
T ss_pred CcCCCCCCEE-CHHHHHH
Confidence 4688888888 6667777
No 92
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.66 E-value=27 Score=35.90 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=45.0
Q ss_pred ccccCcCCcccCChhHHhhhhhcccCccc-ccc-------CCccccCcccccccChhHHHhhhhhccccccccccCcccc
Q 000433 847 THKCKICSQVFLHDQELGVHWMDNHKKEA-QWL-------FRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQC 918 (1513)
Q Consensus 847 pykC~~CgK~F~s~s~L~~H~~r~Htge~-~~~-------~KpYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC 918 (1513)
|-.|+.|+-..-...+|.+. -.|.-.. .+. .....|--|.+.|....... .++ ......|+|
T Consensus 15 P~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~------~~~--~~~~~~y~C 84 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP------FDE--LKDSHRYVC 84 (112)
T ss_pred CCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCCccccc------ccc--cccccceeC
Confidence 45566666666666666553 1221100 000 01124888888887653211 110 111236888
Q ss_pred ccCCCccCCchhhhhhhhhccc
Q 000433 919 IPCGSHFGNTEELWLHVQSVHA 940 (1513)
Q Consensus 919 ~~Cgk~F~sks~L~~H~~~vH~ 940 (1513)
+.|...|--.-+.-.| ...|.
T Consensus 85 ~~C~~~FC~dCD~fiH-e~Lh~ 105 (112)
T TIGR00622 85 AVCKNVFCVDCDVFVH-ESLHC 105 (112)
T ss_pred CCCCCccccccchhhh-hhccC
Confidence 8888888888888888 55664
No 93
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=47.81 E-value=6.4 Score=37.69 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=21.8
Q ss_pred cccccccCCCcCCc-cccccceeeecc
Q 000433 1194 GIRSSDSSDFVNNQ-WEVDECHCIIDS 1219 (1513)
Q Consensus 1194 ~~k~v~~~~p~~~~-w~~~e~~~~l~~ 1219 (1513)
++..|.|..|||.. +.+.|+..||..
T Consensus 26 ~~~dV~Y~sP~GkklRs~~ev~~YL~~ 52 (77)
T smart00391 26 GKFDVYYISPCGKKLRSKSELARYLHK 52 (77)
T ss_pred CcccEEEECCCCCeeeCHHHHHHHHHh
Confidence 35679999999999 999998887764
No 94
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=43.25 E-value=11 Score=33.68 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.9
Q ss_pred hcCCcceeeccccCcccCChhHHHHHHHhhccC
Q 000433 978 NLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG 1010 (1513)
Q Consensus 978 ~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtg 1010 (1513)
.-.||.-+.|+.||+.|....++.+|..+.|.-
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 345777899999999999999999977777753
No 95
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=41.82 E-value=10 Score=43.65 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=22.4
Q ss_pred CCCcccCCCCcccCChhhhhccccccc
Q 000433 1016 SRPHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 1016 eKpykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
.+++.|+.|+........|..-.|+|.
T Consensus 207 ~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 207 GKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred CCCCCCCCCCCcccccccceeeeecch
Confidence 578999999998888888887777776
No 96
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=41.29 E-value=13 Score=46.40 Aligned_cols=19 Identities=42% Similarity=1.027 Sum_probs=16.6
Q ss_pred CCCcccCCCCCCCCCCCccc
Q 000433 1299 QLGCACANSTCFPETCDHVY 1318 (1513)
Q Consensus 1299 ~~GC~C~~g~C~~~~C~C~~ 1318 (1513)
-+||+|. +.|+|++|+|.+
T Consensus 307 eCGCsCr-~~CdPETCaCSq 325 (640)
T KOG3813|consen 307 ECGCSCR-GVCDPETCACSQ 325 (640)
T ss_pred hhCCccc-ceeChhhcchhc
Confidence 4799999 699999999954
No 97
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.64 E-value=45 Score=34.35 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=31.1
Q ss_pred eccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhccccccc
Q 000433 986 ICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKK 1042 (1513)
Q Consensus 986 kC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~ 1042 (1513)
.|--|.+.|........ ++ ......|+|+.|...|-..-....|...|.
T Consensus 57 ~C~~C~~~f~~~~~~~~-------~~-~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPF-------DE-LKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred cccCcCCCCCCcccccc-------cc-cccccceeCCCCCCccccccchhhhhhccC
Confidence 47778888766532211 10 111447888888888888777777777665
No 98
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=40.52 E-value=30 Score=31.64 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=38.6
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccc
Q 000433 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSI 215 (1513)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (1513)
-+|.|=+| -|--|+-+...+-|...++ +.-....|.|.||.. .+|.|++--.+.++
T Consensus 6 lVwaK~~G~p~WPa~V~~~~~~~~~~~~--~~~~~~~~~V~Ffg~-~~~awv~~~~l~p~ 62 (63)
T smart00293 6 LVWAKMKGFPWWPALVVSPKETPDNIRK--RKRFENLYPVLFFGD-KDTAWISSSKLFPL 62 (63)
T ss_pred EEEEECCCCCCCCeEEcCcccCChhHhh--ccCCCCEEEEEEeCC-CCEEEECccceeeC
Confidence 37999999 7777777766665554332 334456788888875 55699987766654
No 99
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=38.65 E-value=30 Score=32.94 Aligned_cols=56 Identities=23% Similarity=0.577 Sum_probs=38.4
Q ss_pred EEEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCCC
Q 000433 157 ALWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFP 219 (1513)
Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1513)
-+|+|=+| -|=-|+=|...+.+- + ......|.|.||... +|.|++.-.|.+.+++-
T Consensus 6 lVWaK~~g~pwWPa~V~~~~~~~~-----~-~~~~~~~~V~Ffg~~-~~~wv~~~~i~~f~~~~ 62 (86)
T PF00855_consen 6 LVWAKLKGYPWWPARVCDPDEKSK-----K-KRKDGHVLVRFFGDN-DYAWVKPSNIKPFSEFK 62 (86)
T ss_dssp EEEEEETTSEEEEEEEEECCHCTS-----C-SSSSTEEEEEETTTT-EEEEEEGGGEEECCHHH
T ss_pred EEEEEeCCCCCCceEEeecccccc-----c-CCCCCEEEEEecCCC-CEEEECHHHhhChhhhH
Confidence 48999987 355666666664443 1 334466777777766 99999998888877544
No 100
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.00 E-value=23 Score=28.39 Aligned_cols=10 Identities=30% Similarity=1.331 Sum_probs=5.3
Q ss_pred eeccccCccc
Q 000433 985 FICRFCGLKF 994 (1513)
Q Consensus 985 ykC~~CgKsF 994 (1513)
|+|..||..+
T Consensus 2 ~~C~~CGy~y 11 (33)
T cd00350 2 YVCPVCGYIY 11 (33)
T ss_pred EECCCCCCEE
Confidence 4555555444
No 101
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=35.74 E-value=14 Score=33.14 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=24.3
Q ss_pred ccCCCCccccCcCCcccCChhHHhhhhhcccC
Q 000433 841 RSEDEKTHKCKICSQVFLHDQELGVHWMDNHK 872 (1513)
Q Consensus 841 ~H~~eKpykC~~CgK~F~s~s~L~~H~~r~Ht 872 (1513)
.-.|+..+.|+-|++.|.......+|.-..|.
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 44567778888888888888888888666664
No 102
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=35.73 E-value=28 Score=34.59 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=34.1
Q ss_pred EEEEecc-ccccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhcccc
Q 000433 158 LWVKWRG-KWQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRS 214 (1513)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1513)
+|+|-+| -|=-|+-|-..+=|-..+..+ +....|.|.|| .+++|.|++--.|-+
T Consensus 7 VWaK~~g~pwWPa~V~~~~~~p~~~~~~~--~~~~~~~V~Ff-gs~~y~Wv~~~~l~p 61 (95)
T cd05838 7 VWAKLGNFRWWPAIICDPREVPPNIQVLR--HCIGEFCVMFF-GTHDYYWVHRGRVFP 61 (95)
T ss_pred EEEECCCCCCCCeEEcChhhcChhHhhcc--CCCCeEEEEEe-CCCCEEEeccccccc
Confidence 7999998 555666665543333222211 23356888888 589999999744443
No 103
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.93 E-value=15 Score=41.84 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=25.7
Q ss_pred CccccCcccccccChhHHHhhhhhccccc-c---cccc-----CccccccCCCccCCc
Q 000433 880 RGYACAICLDSFTNKKVLESHVQERHHVQ-F---VEQC-----MLQQCIPCGSHFGNT 928 (1513)
Q Consensus 880 KpYkC~~CgKsF~sks~L~~H~r~Hh~ek-~---~~~~-----kpykC~~Cgk~F~sk 928 (1513)
+.+.|++|++.|.++.-+....+.-.... . ...- ....|+.||..|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 45667777776666655544443211110 0 0000 124799999988654
No 104
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=33.78 E-value=51 Score=33.34 Aligned_cols=26 Identities=15% Similarity=-0.069 Sum_probs=18.8
Q ss_pred Cccc----CCCCcccCChhhhhcccccccC
Q 000433 1018 PHKK----GIRFYAYKLKSGRLSRPRFKKG 1043 (1513)
Q Consensus 1018 pykC----~~CgK~F~~ks~L~~H~r~H~g 1043 (1513)
-|.| ..|++.+.+...+++|.+.+||
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 3677 7777777777777777776654
No 105
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=33.10 E-value=22 Score=29.04 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=19.7
Q ss_pred eeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccC
Q 000433 985 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYK 1029 (1513)
Q Consensus 985 ykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~ 1029 (1513)
+.|+.|+..|.-...... .. .....|+.|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~------~~-----~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG------AN-----GGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcC------CC-----CCEEECCCCCCEEE
Confidence 567777777766554322 11 22466777777663
No 106
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=32.77 E-value=33 Score=37.25 Aligned_cols=38 Identities=13% Similarity=-0.044 Sum_probs=25.8
Q ss_pred hhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCccc
Q 000433 976 SENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1513)
Q Consensus 976 ~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F 1028 (1513)
+.......-|.|+.|+.+|+....+.. -|.|+.||...
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~~---------------~F~Cp~Cg~~L 138 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEAMEL---------------NFTCPRCGAML 138 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHHHHc---------------CCcCCCCCCEe
Confidence 334445566888888888877777642 58888887653
No 107
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.52 E-value=23 Score=40.30 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCcccCCCCcccCChhhhhccccc---c-------cCCCc-----cccCccCCcCC
Q 000433 1017 RPHKKGIRFYAYKLKSGRLSRPRF---K-------KGLGA-----VSYRIRNRGAA 1057 (1513)
Q Consensus 1017 KpykC~~CgK~F~~ks~L~~H~r~---H-------~geKp-----y~C~~CgksFs 1057 (1513)
|.+.||+|++.|..+.-+....|. . .+..| ..|+.||.+|.
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAF 59 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccc
Confidence 456666666666665444444432 1 12233 45999998875
No 108
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.35 E-value=39 Score=36.16 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCccc
Q 000433 980 GSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1513)
Q Consensus 980 tgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F 1028 (1513)
....-|.|+.|+..|.....+.. .+. ...|.|+.||...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~----~d~------~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL----LDM------DGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh----cCC------CCcEECCCCCCEE
Confidence 34456888888888886554432 011 2248888888765
No 109
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=31.15 E-value=45 Score=41.52 Aligned_cols=33 Identities=27% Similarity=0.607 Sum_probs=24.2
Q ss_pred cccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCC-ee
Q 000433 1466 FINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILP-SF 1506 (1513)
Q Consensus 1466 FINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GE-EL 1506 (1513)
++||||.||+. +.++ ....++.+..++.+++ ||
T Consensus 208 ~~~hsC~pn~~---~~~~-----~~~~~~~~~~~~~~~~~~l 241 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFD-----GRGLALLVPAGIDAGEEEL 241 (482)
T ss_pred hcccCCCCCeE---EEEC-----CceeEEEeecccCCCCCEE
Confidence 78999999998 2333 2346677788888887 66
No 110
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=30.45 E-value=68 Score=39.97 Aligned_cols=81 Identities=0% Similarity=-0.295 Sum_probs=56.4
Q ss_pred ChhhHHhhhhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccccCCCcc
Q 000433 968 YSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAV 1047 (1513)
Q Consensus 968 ~~s~L~~H~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H~geKpy 1047 (1513)
....+..|...|++..+..++++.+.+.....+.. +...|.+ +.++.+..+...+.....+..+..+|+..+.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (396)
T KOG2461|consen 315 KQLVLDQSEVPATVSVWTGETIPVRTPAGQLIYTQ-SHSMEVA-----EPTDMAPNQIWKIYHTGVLGFLIITTDESECN 388 (396)
T ss_pred cccccccccccccccccCcCcccccccccccchhh-hhhcccC-----CCCcccccccccceeccccceeeeeccccccc
Confidence 34556667777887777778888888888777777 6667776 55666666666666666666677777777777
Q ss_pred ccCccCC
Q 000433 1048 SYRIRNR 1054 (1513)
Q Consensus 1048 ~C~~Cgk 1054 (1513)
.+..|++
T Consensus 389 ~~~~~~~ 395 (396)
T KOG2461|consen 389 NMSFVCK 395 (396)
T ss_pred cccccCC
Confidence 7666554
No 111
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=30.13 E-value=21 Score=34.95 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=23.2
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcccCCh
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLK 1031 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~k 1031 (1513)
.+|.|+.|++.- +.|+-+| -+.|..|++.|.--
T Consensus 34 ~~~~Cp~C~~~~---------VkR~a~G-------IW~C~kCg~~fAGg 66 (89)
T COG1997 34 AKHVCPFCGRTT---------VKRIATG-------IWKCRKCGAKFAGG 66 (89)
T ss_pred cCCcCCCCCCcc---------eeeeccC-------eEEcCCCCCeeccc
Confidence 468888888762 4555555 78888888888643
No 112
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=28.55 E-value=58 Score=40.00 Aligned_cols=110 Identities=15% Similarity=0.036 Sum_probs=59.2
Q ss_pred CcCCcccCChhHHhhhhhcccCcccccc-------CCcccc--CcccccccChhHHHhhhhhccccccccc-cCcccccc
Q 000433 851 KICSQVFLHDQELGVHWMDNHKKEAQWL-------FRGYAC--AICLDSFTNKKVLESHVQERHHVQFVEQ-CMLQQCIP 920 (1513)
Q Consensus 851 ~~CgK~F~s~s~L~~H~~r~Htge~~~~-------~KpYkC--~~CgKsF~sks~L~~H~r~Hh~ek~~~~-~kpykC~~ 920 (1513)
+.|+..+-.+....+| ..+|......+ ...|.| .+|.| +.+....|-.-|+......- .--|.|..
T Consensus 277 e~C~ykr~~k~DvirH-~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~GfrrthfhC~r 352 (480)
T KOG4377|consen 277 EYCFYKRGQKNDVIRH-VEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFHCQR 352 (480)
T ss_pred ccccccccchhhhHHH-HHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecceeEEec
Confidence 4687777778888888 67776432111 112556 45887 55566677766644321110 02477988
Q ss_pred CCCccCCchhhhhhhhhcccccccchhhhhccccccCCCCCccccCC
Q 000433 921 CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELG 967 (1513)
Q Consensus 921 Cgk~F~sks~L~~H~~~vH~~ef~~~~~~k~k~~~C~~C~~~~~~f~ 967 (1513)
|+-++..+ ...| +..|............+-++-..|+|.+..+.
T Consensus 353 ~gCTdtfK--~~kh-k~yh~kdda~~~dGfkkf~k~e~cay~gCkys 396 (480)
T KOG4377|consen 353 IGCTDTFK--DSKH-KPYHYKDDAGEIDGFKKFFKDENCAYTGCKYS 396 (480)
T ss_pred cCCccccc--cccc-cccccCcchhhhhhhhhhhccccCCccCcccc
Confidence 88444444 5556 54554432222333334455566665554443
No 113
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=28.28 E-value=87 Score=32.32 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=40.7
Q ss_pred EEEEEeccc-cccceeeeec----cC-----CCcccc----ccccCCCccEEEEEeccCCcchhhhhhccccccC
Q 000433 157 ALWVKWRGK-WQAGIRCARA----DW-----PLPTLK----AKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINE 217 (1513)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~----~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1513)
-||.|-+|- |.-|+-.-.. .. |++-|+ .+.-.+.+.|+|-||=.+++|.|++---+.+..+
T Consensus 6 lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~~Wv~~~~l~pl~~ 80 (111)
T cd05839 6 LVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTWQWLPGDKLEPLGV 80 (111)
T ss_pred EeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcceecCHHHCccccc
Confidence 379998883 6666554422 11 112222 2334678889999999999999999887776654
No 114
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.26 E-value=40 Score=37.43 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=21.3
Q ss_pred CcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCccc
Q 000433 981 SIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 1028 (1513)
Q Consensus 981 geKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~F 1028 (1513)
...-|.|+.|++.|+....+. .-|.|+.||...
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------------~~F~Cp~Cg~~L 146 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------------YGFRCPQCGEML 146 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------------cCCcCCCCCCCC
Confidence 335577777777777666552 257777777654
No 115
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.55 E-value=20 Score=29.42 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=7.7
Q ss_pred eeccccCcccCC
Q 000433 985 FICRFCGLKFDL 996 (1513)
Q Consensus 985 ykC~~CgKsF~s 996 (1513)
|+|..||+.|..
T Consensus 6 y~C~~Cg~~fe~ 17 (41)
T smart00834 6 YRCEDCGHTFEV 17 (41)
T ss_pred EEcCCCCCEEEE
Confidence 667777766643
No 116
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=27.39 E-value=45 Score=33.69 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.7
Q ss_pred ccc----ccCCCccCCchhhhhhhhhcc
Q 000433 916 QQC----IPCGSHFGNTEELWLHVQSVH 939 (1513)
Q Consensus 916 ykC----~~Cgk~F~sks~L~~H~~~vH 939 (1513)
|.| ..|+..+.+...+.+|++..|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 889 999999999999999988776
No 117
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.62 E-value=31 Score=39.84 Aligned_cols=46 Identities=15% Similarity=0.452 Sum_probs=22.7
Q ss_pred cccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccChhHHHhhhh
Q 000433 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQ 902 (1513)
Q Consensus 848 ykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~sks~L~~H~r 902 (1513)
|.|..||..... ..+.+|+.+.|.. -|.|-.|++.|.. ..+..|.+
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn~-------~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRNA-------YFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccCC-------eeEEeeccccccc-chhhhhhh
Confidence 455556555442 3344453333321 3556666666655 44555544
No 118
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.31 E-value=35 Score=39.46 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=38.6
Q ss_pred ccccCcccccccChhHHHhhhhhccccccccccCccccccCCCccCCchhhhhhhh
Q 000433 881 GYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQ 936 (1513)
Q Consensus 881 pYkC~~CgKsF~sks~L~~H~r~Hh~ek~~~~~kpykC~~Cgk~F~sks~L~~H~~ 936 (1513)
-|.|..||.+..- ..+.+|+-..++. -|.|-.|++.|.. ..+..|..
T Consensus 3 ~FtCnvCgEsvKK-p~vekH~srCrn~-------~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVKK-PQVEKHMSRCRNA-------YFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhccc-cchHHHHHhccCC-------eeEEeeccccccc-chhhhhhh
Confidence 3889999998765 4677799888884 5899999999998 77888854
No 119
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.72 E-value=21 Score=30.21 Aligned_cols=12 Identities=33% Similarity=1.099 Sum_probs=7.5
Q ss_pred eeccccCcccCC
Q 000433 985 FICRFCGLKFDL 996 (1513)
Q Consensus 985 ykC~~CgKsF~s 996 (1513)
|+|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 666666666644
No 120
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=25.49 E-value=52 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=16.4
Q ss_pred CcceeeccccCcccCCh----hHHHHHHHhhc
Q 000433 981 SIRKFICRFCGLKFDLL----PDLGRHHQAAH 1008 (1513)
Q Consensus 981 geKpykC~~CgKsF~sk----s~L~rHHqrvH 1008 (1513)
+....+|.+|++.+... +.|.+|..+.|
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 34567888888888764 77888544555
No 121
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=25.44 E-value=38 Score=27.12 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.0
Q ss_pred CcccccccccCccccccCCC
Q 000433 590 GTRCKHRALYGSSFCKKHRP 609 (1513)
Q Consensus 590 g~~ck~~~~~~~~~ck~~~~ 609 (1513)
.|.|+-...+|+.||..|.|
T Consensus 12 ~R~C~m~~~~g~~fC~~H~~ 31 (31)
T PF11722_consen 12 KRFCKMTRKPGSRFCGEHMP 31 (31)
T ss_pred ccccCCeecCcCCccccCCC
Confidence 57899999999999999975
No 122
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=25.17 E-value=24 Score=32.69 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=25.6
Q ss_pred eecCcccccccccCccccccCCCCCCCCCcCCCCcc
Q 000433 587 TVLGTRCKHRALYGSSFCKKHRPRTDTGRILDSPDN 622 (1513)
Q Consensus 587 ~~~g~~ck~~~~~~~~~ck~~~~~~~~~~~~~~~~~ 622 (1513)
+..|+.|+.+++||+.||=+|=..- .++.|+..+.
T Consensus 3 ~~~~~~C~~~~lp~~~yC~~HIl~D-~~Q~Lf~~C~ 37 (65)
T PF13891_consen 3 TYSGRGCSQPALPGSKYCIRHILED-PNQPLFKQCS 37 (65)
T ss_pred CCCCCCcCcccCchhhHHHHHhccC-CCCCCcccCc
Confidence 4578999999999999999887332 2255555554
No 123
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=25.09 E-value=46 Score=42.29 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=28.1
Q ss_pred cccCCCCCCceEEEEEEccccCCeeEEEEEEccCCCCCCee-ecCC
Q 000433 1466 FINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDVSILPSF-YAIN 1510 (1513)
Q Consensus 1466 FINHSC~PN~~~~~V~v~~~d~~~prIafFA~RdI~~GEEL-yDYn 1510 (1513)
+.||++.+ ....++. ....+-+++.++|.+|||+ ..|+
T Consensus 239 ~~NH~~~~----~~~~~~~---~d~~~~l~~~~~v~~geevfi~YG 277 (472)
T KOG1337|consen 239 LLNHSPEV----IKAGYNQ---EDEAVELVAERDVSAGEEVFINYG 277 (472)
T ss_pred hhccCchh----ccccccC---CCCcEEEEEeeeecCCCeEEEecC
Confidence 57999999 2223333 2337899999999999999 6665
No 124
>PF14353 CpXC: CpXC protein
Probab=24.38 E-value=45 Score=34.67 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=31.0
Q ss_pred eccccCcccCCh----------hHHHHHHHhhccCCCCCCCCCcccCCCCcccCChhhhhcccccc
Q 000433 986 ICRFCGLKFDLL----------PDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 1041 (1513)
Q Consensus 986 kC~~CgKsF~sk----------s~L~rHHqrvHtge~~~~eKpykC~~CgK~F~~ks~L~~H~r~H 1041 (1513)
.|+.|+..|... ..|+. ++-.|. --.|.|+.||+.|.-...+..|-..|
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e---~il~g~----l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKE---KILDGS----LFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHH---HHHcCC----cCEEECCCCCCceecCCCEEEEcCCC
Confidence 578888777532 22322 222332 34688999999888888877776544
No 125
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.04 E-value=43 Score=41.55 Aligned_cols=44 Identities=14% Similarity=-0.093 Sum_probs=31.6
Q ss_pred HHhhccCCccccccccccccccccCChHHHHhHhhcCCcccCCCCC
Q 000433 769 LSLRNPVPMEIQFQWALSEASKDAGIGEFLMKLVCCEKERLSKTWG 814 (1513)
Q Consensus 769 ~~H~r~H~~ek~y~~~C~~CgK~F~s~~~L~k~iHteKpy~C~~Cg 814 (1513)
..-++.-.....| .|+.|.+.|+....++...-....|.|..|+
T Consensus 117 ed~~~d~t~~~~Y--~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 117 EDRLRDDTNVAGY--VCPNCQKKYTSLEALQLLDNETGEFHCENCG 160 (436)
T ss_pred HHHhhhccccccc--cCCccccchhhhHHHHhhcccCceEEEecCC
Confidence 3333444555566 9999999999887776444436789999998
No 126
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.01 E-value=41 Score=34.42 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=6.8
Q ss_pred CcccCCCCcccCCh
Q 000433 1018 PHKKGIRFYAYKLK 1031 (1513)
Q Consensus 1018 pykC~~CgK~F~~k 1031 (1513)
|-.|+.||..|.-.
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 44455555554443
No 127
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=24.00 E-value=27 Score=30.49 Aligned_cols=11 Identities=36% Similarity=1.219 Sum_probs=6.1
Q ss_pred eeccccCcccC
Q 000433 985 FICRFCGLKFD 995 (1513)
Q Consensus 985 ykC~~CgKsF~ 995 (1513)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 55555555554
No 128
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.91 E-value=54 Score=35.64 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=27.2
Q ss_pred hhccCCCCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccc
Q 000433 839 AGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSF 891 (1513)
Q Consensus 839 ~r~H~~eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF 891 (1513)
+....+..-|.|+.|+..|+....+. ..|.|+.||...
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEAME---------------LNFTCPRCGAML 138 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHHHH---------------cCCcCCCCCCEe
Confidence 34445566788999998888777663 238899998764
No 129
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.79 E-value=69 Score=34.31 Aligned_cols=39 Identities=13% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCCCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccc
Q 000433 843 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSF 891 (1513)
Q Consensus 843 ~~eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF 891 (1513)
.....|.|+.|+..|.....+..- +. . ..|.|+.||...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~~----d~-~-----~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQLL----DM-D-----GTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHhc----CC-C-----CcEECCCCCCEE
Confidence 344567788888777755443321 11 2 337777777654
No 130
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=22.56 E-value=44 Score=29.52 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=20.1
Q ss_pred ceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcc
Q 000433 983 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA 1027 (1513)
Q Consensus 983 KpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~ 1027 (1513)
..|.|..||+.| ..+.. .....|+.||..
T Consensus 5 ~~Y~C~~Cg~~~---~~~~~-------------~~~irCp~Cg~r 33 (49)
T COG1996 5 MEYKCARCGREV---ELDQE-------------TRGIRCPYCGSR 33 (49)
T ss_pred EEEEhhhcCCee---ehhhc-------------cCceeCCCCCcE
Confidence 468899999988 22222 456889888865
No 131
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=21.95 E-value=27 Score=31.91 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=21.9
Q ss_pred cccccccCCCcCCc-cccccceeeeccc
Q 000433 1194 GIRSSDSSDFVNNQ-WEVDECHCIIDSR 1220 (1513)
Q Consensus 1194 ~~k~v~~~~p~~~~-w~~~e~~~~l~~~ 1220 (1513)
++..|.|..|||.. +.+.|+..+|...
T Consensus 23 ~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 23 GKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CcceEEEECCCCceecCHHHHHHHHHhC
Confidence 45578999999988 9999988877654
No 132
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=21.92 E-value=34 Score=37.18 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred cccCcCCcccCChhHHhhhhhcccCccccccCCccccCcccccccC
Q 000433 848 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTN 893 (1513)
Q Consensus 848 ykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~s 893 (1513)
++||.||..+.....-..- ..--.-. +.|+|+.||++|.+
T Consensus 1 m~cp~c~~~~~~~~~s~~~-~~~~~~~-----~~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPA-EDGNAIR-----RRRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEecccc-CCCCcee-----eeeeccccCCcceE
No 133
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.70 E-value=1.1e+02 Score=29.70 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=35.6
Q ss_pred EEEEEeccc-cccceeeeeccCCCccccccccCCCccEEEEEeccCCcchhhhhhccccccCC
Q 000433 157 ALWVKWRGK-WQAGIRCARADWPLPTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEF 218 (1513)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1513)
-+|.|=+|- |=-|+=|...+. +-..++|.|.||. |..|.||..-.+.++.++
T Consensus 8 lVwaK~kGyp~WPa~I~~~~~~---------~~~~~~~~V~FfG-t~~~a~v~~~~l~pf~~~ 60 (83)
T cd05834 8 LVFAKVKGYPAWPARVDEPEDW---------KPPGKKYPVYFFG-THETAFLKPEDLFPYTEN 60 (83)
T ss_pred EEEEecCCCCCCCEEEeccccc---------CCCCCEEEEEEeC-CCCEeEECHHHceecccc
Confidence 368887773 333444444332 2235789999999 789999998888888775
No 134
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.54 E-value=45 Score=34.15 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=7.7
Q ss_pred ccccccCCCccCCc
Q 000433 915 LQQCIPCGSHFGNT 928 (1513)
Q Consensus 915 pykC~~Cgk~F~sk 928 (1513)
|..|+.||..|.-.
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 44566666555544
No 135
>PHA00626 hypothetical protein
Probab=21.10 E-value=34 Score=30.91 Aligned_cols=13 Identities=8% Similarity=-0.455 Sum_probs=8.7
Q ss_pred CcccCCCCcccCC
Q 000433 1018 PHKKGIRFYAYKL 1030 (1513)
Q Consensus 1018 pykC~~CgK~F~~ 1030 (1513)
.|+|+.||+.|+.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 5777777766654
No 136
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.59 E-value=66 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=25.2
Q ss_pred cCCCCccccCcCCcccCChhHHhhhhhcccCccccccCCccccCccccccc
Q 000433 842 SEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFT 892 (1513)
Q Consensus 842 H~~eKpykC~~CgK~F~s~s~L~~H~~r~Htge~~~~~KpYkC~~CgKsF~ 892 (1513)
-.....|.|+.|+..|+....+. ..|.|+.||....
T Consensus 112 e~~~~~Y~Cp~C~~rytf~eA~~---------------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 112 EENNMFFFCPNCHIRFTFDEAME---------------YGFRCPQCGEMLE 147 (178)
T ss_pred ccCCCEEECCCCCcEEeHHHHhh---------------cCCcCCCCCCCCe
Confidence 34456688999998887766542 2488999987643
No 137
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.23 E-value=65 Score=40.06 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=27.5
Q ss_pred hhhcCCcceeeccccCcccCChhHHHHHHHhhccCCCCCCCCCcccCCCCcc
Q 000433 976 SENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA 1027 (1513)
Q Consensus 976 ~r~HtgeKpykC~~CgKsF~sks~L~rHHqrvHtge~~~~eKpykC~~CgK~ 1027 (1513)
++.-+...-|.|+.|.++|+....|+- ...- ...|.|..|+-.
T Consensus 120 ~~d~t~~~~Y~Cp~C~kkyt~Lea~~L--~~~~-------~~~F~C~~C~ge 162 (436)
T KOG2593|consen 120 LRDDTNVAGYVCPNCQKKYTSLEALQL--LDNE-------TGEFHCENCGGE 162 (436)
T ss_pred hhhccccccccCCccccchhhhHHHHh--hccc-------CceEEEecCCCc
Confidence 334445567888888888888777654 1111 236888888744
No 138
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.18 E-value=59 Score=26.43 Aligned_cols=9 Identities=44% Similarity=1.121 Sum_probs=5.0
Q ss_pred ccccCcCCc
Q 000433 847 THKCKICSQ 855 (1513)
Q Consensus 847 pykC~~CgK 855 (1513)
|..|++|+.
T Consensus 18 p~~CP~Cg~ 26 (34)
T cd00729 18 PEKCPICGA 26 (34)
T ss_pred CCcCcCCCC
Confidence 445666654
Done!