Query 000434
Match_columns 1513
No_of_seqs 644 out of 3073
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-236 3E-241 2187.5 104.5 1360 3-1456 2-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-203 2E-208 1917.8 77.0 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 3E-189 8E-194 1766.9 64.7 673 62-734 1-673 (674)
4 KOG0161 Myosin class II heavy 100.0 1E-184 3E-189 1805.5 93.9 1027 5-1053 25-1121(1930)
5 KOG0164 Myosin class I heavy c 100.0 9E-185 2E-189 1589.8 59.3 728 61-805 7-755 (1001)
6 cd01380 MYSc_type_V Myosin mot 100.0 9E-185 2E-189 1737.7 62.3 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 2E-184 4E-189 1726.6 61.8 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 4E-184 9E-189 1732.2 63.9 667 60-731 3-693 (693)
9 KOG0160 Myosin class V heavy c 100.0 3E-183 5E-188 1682.4 66.7 752 60-824 6-758 (862)
10 cd01383 MYSc_type_VIII Myosin 100.0 1E-182 2E-187 1708.9 61.8 657 60-731 6-677 (677)
11 cd01378 MYSc_type_I Myosin mot 100.0 1E-182 2E-187 1714.8 61.9 662 63-731 1-674 (674)
12 KOG0163 Myosin class VI heavy 100.0 1E-179 3E-184 1544.1 79.1 789 8-813 2-842 (1259)
13 cd01387 MYSc_type_XV Myosin mo 100.0 9E-182 2E-186 1703.7 62.4 661 62-731 1-677 (677)
14 cd01385 MYSc_type_IX Myosin mo 100.0 2E-181 5E-186 1704.0 64.9 664 61-732 6-689 (692)
15 cd01382 MYSc_type_VI Myosin mo 100.0 4E-181 8E-186 1707.9 63.9 664 60-730 2-715 (717)
16 cd01379 MYSc_type_III Myosin m 100.0 8E-179 2E-183 1667.7 62.8 639 63-731 1-653 (653)
17 KOG0162 Myosin class I heavy c 100.0 1E-178 2E-183 1537.0 52.4 694 60-764 16-724 (1106)
18 smart00242 MYSc Myosin. Large 100.0 2E-177 4E-182 1676.7 64.2 666 61-731 5-676 (677)
19 cd00124 MYSc Myosin motor doma 100.0 2E-175 4E-180 1664.3 63.0 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 4E-175 9E-180 1653.0 61.1 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 3E-167 7E-172 1612.0 54.1 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 9E-116 2E-120 1108.8 27.7 751 61-826 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 3.1E-30 6.8E-35 307.2 22.7 299 1104-1480 553-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 1.4E-27 3E-32 235.0 6.1 105 1331-1438 1-105 (105)
25 KOG0161 Myosin class II heavy 99.5 7.5E-11 1.6E-15 160.1 46.8 452 353-852 324-819 (1930)
26 cd01363 Motor_domain Myosin an 98.7 2.3E-08 5.1E-13 109.4 7.5 88 132-230 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.4 0.00048 1E-08 91.2 34.0 132 746-880 732-867 (1463)
28 KOG0520 Uncharacterized conser 98.3 1.3E-06 2.9E-11 111.3 8.7 120 735-854 809-936 (975)
29 KOG0160 Myosin class V heavy c 98.2 7.5E-06 1.6E-10 104.8 13.3 86 784-872 673-758 (862)
30 PF02736 Myosin_N: Myosin N-te 98.2 5.4E-06 1.2E-10 67.0 6.6 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 97.9 1.8E-05 3.9E-10 101.3 8.0 157 716-880 769-939 (975)
32 KOG0971 Microtubule-associated 97.6 0.072 1.6E-06 67.4 30.6 29 1301-1329 897-925 (1243)
33 KOG1029 Endocytic adaptor prot 97.5 0.013 2.9E-07 72.4 23.2 12 1354-1365 1011-1022(1118)
34 KOG1029 Endocytic adaptor prot 97.4 0.7 1.5E-05 58.0 36.3 52 975-1026 530-581 (1118)
35 TIGR02169 SMC_prok_A chromosom 97.3 2.1 4.7E-05 60.6 46.3 8 1164-1171 616-623 (1164)
36 TIGR02169 SMC_prok_A chromosom 97.2 2.6 5.6E-05 59.8 45.2 8 520-527 38-45 (1164)
37 PF09726 Macoilin: Transmembra 97.2 0.073 1.6E-06 69.2 26.3 83 971-1053 543-653 (697)
38 PRK11637 AmiB activator; Provi 97.1 0.076 1.6E-06 66.2 25.2 19 1022-1040 233-251 (428)
39 KOG0250 DNA repair protein RAD 97.1 1 2.3E-05 59.4 34.9 71 979-1049 393-463 (1074)
40 KOG0933 Structural maintenance 97.0 0.29 6.3E-06 63.3 28.3 21 154-178 30-50 (1174)
41 KOG0996 Structural maintenance 97.0 1.4 3E-05 58.4 34.3 16 1419-1434 1202-1217(1293)
42 PF09726 Macoilin: Transmembra 96.9 0.29 6.2E-06 63.8 27.7 70 980-1049 587-656 (697)
43 KOG4229 Myosin VII, myosin IXB 96.9 0.00047 1E-08 91.1 2.5 117 605-721 644-761 (1062)
44 KOG0971 Microtubule-associated 96.8 2.8 6.1E-05 53.9 35.7 41 1011-1051 507-547 (1243)
45 KOG0933 Structural maintenance 96.8 0.75 1.6E-05 59.7 29.4 25 885-909 737-761 (1174)
46 PRK11637 AmiB activator; Provi 96.8 0.14 2.9E-06 64.0 23.4 32 1017-1048 221-252 (428)
47 PF12718 Tropomyosin_1: Tropom 96.8 0.21 4.7E-06 52.1 20.8 105 921-1039 35-139 (143)
48 KOG2128 Ras GTPase-activating 96.8 0.033 7.1E-07 74.2 17.7 116 763-878 511-645 (1401)
49 PRK04863 mukB cell division pr 96.8 2.4 5.2E-05 60.1 36.7 41 1011-1051 438-478 (1486)
50 KOG0250 DNA repair protein RAD 96.7 2.4 5.2E-05 56.3 33.8 65 972-1036 400-464 (1074)
51 KOG0164 Myosin class I heavy c 96.7 0.027 5.9E-07 69.5 15.0 83 783-875 695-787 (1001)
52 COG1196 Smc Chromosome segrega 96.6 6.3 0.00014 55.6 44.9 32 1013-1044 458-489 (1163)
53 KOG0163 Myosin class VI heavy 96.5 1.3 2.8E-05 55.5 27.6 68 176-246 149-222 (1259)
54 TIGR02168 SMC_prok_B chromosom 96.5 3.9 8.6E-05 57.9 37.6 8 699-706 125-132 (1179)
55 COG4942 Membrane-bound metallo 96.4 0.8 1.7E-05 55.3 24.9 41 1010-1050 212-252 (420)
56 PF00612 IQ: IQ calmodulin-bin 96.4 0.004 8.7E-08 42.4 3.5 18 786-803 3-20 (21)
57 PF07888 CALCOCO1: Calcium bin 96.4 0.54 1.2E-05 58.6 24.1 12 662-673 42-53 (546)
58 PF00612 IQ: IQ calmodulin-bin 96.4 0.0043 9.4E-08 42.3 3.3 20 760-779 2-21 (21)
59 KOG4643 Uncharacterized coiled 96.2 0.77 1.7E-05 59.5 24.0 33 885-917 404-436 (1195)
60 COG1579 Zn-ribbon protein, pos 96.2 1.3 2.9E-05 49.8 23.3 48 972-1019 88-135 (239)
61 PF12128 DUF3584: Protein of u 96.1 12 0.00026 53.1 41.6 33 741-773 227-259 (1201)
62 PF14662 CCDC155: Coiled-coil 96.1 0.52 1.1E-05 50.6 18.6 77 976-1052 63-139 (193)
63 KOG0925 mRNA splicing factor A 96.0 0.0063 1.4E-07 72.2 4.3 57 102-167 24-80 (699)
64 PHA02562 46 endonuclease subun 96.0 1.1 2.3E-05 58.3 25.3 79 972-1050 298-386 (562)
65 PRK02224 chromosome segregatio 96.0 7.2 0.00016 53.6 34.6 25 1019-1043 409-433 (880)
66 KOG1853 LIS1-interacting prote 95.9 1.5 3.2E-05 48.3 21.1 18 1028-1045 163-180 (333)
67 KOG0976 Rho/Rac1-interacting s 95.9 0.87 1.9E-05 57.2 21.8 31 971-1001 349-379 (1265)
68 KOG4673 Transcription factor T 95.8 6.5 0.00014 49.3 28.5 25 1027-1051 610-634 (961)
69 PRK09039 hypothetical protein; 95.8 0.78 1.7E-05 55.2 21.1 24 889-912 53-76 (343)
70 PF00038 Filament: Intermediat 95.7 3.5 7.5E-05 49.2 26.6 32 885-916 71-102 (312)
71 PRK02224 chromosome segregatio 95.7 2.9 6.2E-05 57.4 29.3 8 717-724 133-140 (880)
72 PRK03918 chromosome segregatio 95.7 0.67 1.4E-05 63.6 23.2 18 151-168 25-42 (880)
73 PHA02562 46 endonuclease subun 95.7 3 6.5E-05 54.1 27.9 55 993-1047 336-390 (562)
74 KOG0980 Actin-binding protein 95.7 7.6 0.00017 50.4 29.4 15 611-625 203-217 (980)
75 PF12128 DUF3584: Protein of u 95.7 17 0.00037 51.5 49.8 27 631-657 110-136 (1201)
76 PRK09039 hypothetical protein; 95.7 1.2 2.5E-05 53.7 22.1 13 1141-1153 240-252 (343)
77 KOG4643 Uncharacterized coiled 95.6 7.5 0.00016 51.0 29.1 69 971-1039 262-332 (1195)
78 PF08317 Spc7: Spc7 kinetochor 95.6 1.3 2.8E-05 53.1 22.0 57 972-1028 208-264 (325)
79 PRK03918 chromosome segregatio 95.5 2.6 5.6E-05 57.9 27.8 14 1441-1454 824-837 (880)
80 KOG0995 Centromere-associated 95.5 7.1 0.00015 48.6 27.2 18 881-898 307-324 (581)
81 KOG1853 LIS1-interacting prote 95.4 5.5 0.00012 44.1 23.5 43 1011-1053 136-181 (333)
82 PF00261 Tropomyosin: Tropomyo 95.4 1 2.2E-05 51.5 19.4 36 1013-1048 181-216 (237)
83 PF09755 DUF2046: Uncharacteri 95.4 7.2 0.00016 45.4 26.7 22 1032-1053 181-202 (310)
84 KOG0977 Nuclear envelope prote 95.3 7.8 0.00017 48.7 27.2 21 745-765 50-70 (546)
85 KOG4593 Mitotic checkpoint pro 95.2 13 0.00028 47.4 30.9 37 1017-1053 277-316 (716)
86 KOG0996 Structural maintenance 95.2 17 0.00038 48.8 43.7 15 1362-1376 939-953 (1293)
87 COG1196 Smc Chromosome segrega 95.2 23 0.00051 50.1 45.3 13 514-526 32-45 (1163)
88 TIGR00606 rad50 rad50. This fa 95.1 4.5 9.8E-05 57.8 28.6 21 150-170 29-49 (1311)
89 PF15070 GOLGA2L5: Putative go 95.1 2.3 4.9E-05 54.9 23.1 13 1468-1480 594-606 (617)
90 PF08317 Spc7: Spc7 kinetochor 95.1 2.5 5.3E-05 50.7 22.2 11 670-680 13-23 (325)
91 PTZ00014 myosin-A; Provisional 95.0 0.046 9.9E-07 72.4 7.9 40 786-825 779-818 (821)
92 PF05667 DUF812: Protein of un 95.0 0.96 2.1E-05 58.0 19.3 39 1012-1050 444-482 (594)
93 KOG2129 Uncharacterized conser 95.0 10 0.00023 44.9 27.7 33 925-957 194-226 (552)
94 COG3883 Uncharacterized protei 94.9 4.3 9.3E-05 46.3 21.8 72 971-1042 146-217 (265)
95 PF05667 DUF812: Protein of un 94.9 4.9 0.00011 51.7 25.1 80 973-1052 447-528 (594)
96 TIGR00606 rad50 rad50. This fa 94.9 12 0.00025 53.8 31.6 22 1145-1166 1143-1164(1311)
97 PF09755 DUF2046: Uncharacteri 94.8 7.4 0.00016 45.3 23.6 43 1005-1047 160-203 (310)
98 TIGR02168 SMC_prok_B chromosom 94.8 30 0.00065 49.1 48.8 16 666-681 116-132 (1179)
99 KOG0612 Rho-associated, coiled 94.8 21 0.00046 48.3 30.1 11 567-577 241-251 (1317)
100 KOG0980 Actin-binding protein 94.8 15 0.00033 47.8 27.9 12 1391-1402 851-862 (980)
101 COG4372 Uncharacterized protei 94.7 12 0.00026 44.1 28.3 63 974-1036 211-280 (499)
102 PF15619 Lebercilin: Ciliary p 94.6 6.8 0.00015 43.2 22.1 68 975-1042 120-191 (194)
103 KOG1103 Predicted coiled-coil 94.6 6.6 0.00014 45.2 22.0 40 1010-1049 254-293 (561)
104 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 4.6 9.9E-05 41.7 19.4 36 1019-1054 95-130 (132)
105 KOG2128 Ras GTPase-activating 94.5 2.5 5.4E-05 57.3 21.3 140 740-879 451-616 (1401)
106 KOG4360 Uncharacterized coiled 94.4 0.96 2.1E-05 54.7 15.8 74 977-1050 230-303 (596)
107 smart00015 IQ Short calmodulin 94.4 0.042 9.1E-07 39.6 3.0 19 785-803 4-22 (26)
108 PF14662 CCDC155: Coiled-coil 94.2 9.8 0.00021 41.2 22.8 33 972-1004 101-133 (193)
109 PRK04863 mukB cell division pr 94.2 41 0.0009 48.2 37.5 27 975-1001 451-477 (1486)
110 KOG0946 ER-Golgi vesicle-tethe 94.1 9.6 0.00021 49.0 24.1 76 975-1050 808-883 (970)
111 PF13207 AAA_17: AAA domain; P 94.1 0.036 7.7E-07 55.9 3.0 23 151-173 1-23 (121)
112 smart00015 IQ Short calmodulin 94.1 0.059 1.3E-06 38.8 3.2 20 759-778 3-22 (26)
113 PF08614 ATG16: Autophagy prot 94.0 0.3 6.6E-06 53.9 10.3 74 978-1051 107-180 (194)
114 KOG4674 Uncharacterized conser 94.0 43 0.00094 47.9 37.4 70 887-956 764-833 (1822)
115 smart00787 Spc7 Spc7 kinetocho 94.0 6 0.00013 46.9 21.4 9 670-678 9-17 (312)
116 PF07111 HCR: Alpha helical co 94.0 12 0.00026 47.7 24.5 38 881-918 100-137 (739)
117 KOG0612 Rho-associated, coiled 93.9 23 0.00049 48.0 27.8 72 977-1048 620-693 (1317)
118 PF04849 HAP1_N: HAP1 N-termin 93.9 2 4.4E-05 49.9 16.7 16 982-997 236-251 (306)
119 TIGR03185 DNA_S_dndD DNA sulfu 93.9 14 0.0003 48.9 27.0 70 982-1051 393-464 (650)
120 KOG0977 Nuclear envelope prote 93.8 13 0.00029 46.7 24.4 21 883-903 57-77 (546)
121 PF10168 Nup88: Nuclear pore c 93.7 4.9 0.00011 53.0 22.0 21 621-641 421-441 (717)
122 KOG0018 Structural maintenance 93.7 35 0.00077 45.7 35.7 40 785-824 211-250 (1141)
123 KOG4593 Mitotic checkpoint pro 93.6 28 0.00062 44.5 28.2 25 1414-1438 631-662 (716)
124 PF15066 CAGE1: Cancer-associa 93.6 4.6 0.0001 48.6 19.2 25 882-906 331-355 (527)
125 COG1340 Uncharacterized archae 93.6 18 0.00038 42.1 24.9 26 1017-1042 223-248 (294)
126 PF04849 HAP1_N: HAP1 N-termin 93.6 14 0.0003 43.2 22.7 12 924-935 163-174 (306)
127 KOG0963 Transcription factor/C 93.6 27 0.00059 44.1 27.4 67 974-1050 286-358 (629)
128 KOG0999 Microtubule-associated 93.5 8.2 0.00018 47.3 21.1 20 890-909 44-63 (772)
129 PF04091 Sec15: Exocyst comple 93.4 0.47 1E-05 56.3 11.1 131 1301-1433 177-311 (311)
130 PRK01156 chromosome segregatio 93.4 45 0.00098 46.0 35.9 34 1017-1050 411-444 (895)
131 smart00787 Spc7 Spc7 kinetocho 93.3 11 0.00023 44.9 22.0 6 864-869 136-141 (312)
132 PF15619 Lebercilin: Ciliary p 93.2 16 0.00034 40.4 22.9 62 982-1043 120-185 (194)
133 KOG0978 E3 ubiquitin ligase in 93.2 36 0.00077 44.3 38.7 76 980-1055 545-620 (698)
134 KOG0999 Microtubule-associated 93.2 28 0.0006 43.0 26.8 20 1013-1032 199-218 (772)
135 PF13851 GAS: Growth-arrest sp 93.2 14 0.0003 41.1 21.3 43 971-1013 91-133 (201)
136 PF09789 DUF2353: Uncharacteri 93.0 24 0.00052 41.7 25.3 22 920-941 78-99 (319)
137 KOG1937 Uncharacterized conser 92.9 22 0.00048 42.9 23.1 15 663-677 75-89 (521)
138 KOG0979 Structural maintenance 92.9 15 0.00033 48.6 23.5 28 1304-1331 836-864 (1072)
139 PF15070 GOLGA2L5: Putative go 92.8 40 0.00087 43.9 30.8 32 1012-1043 199-230 (617)
140 PF13401 AAA_22: AAA domain; P 92.7 0.075 1.6E-06 54.3 2.7 29 147-175 2-30 (131)
141 KOG0964 Structural maintenance 92.4 17 0.00038 47.7 22.8 45 1010-1054 455-499 (1200)
142 PF05483 SCP-1: Synaptonemal c 92.3 42 0.0009 42.9 27.3 201 847-1054 423-626 (786)
143 PF13238 AAA_18: AAA domain; P 92.3 0.092 2E-06 53.2 2.7 22 152-173 1-22 (129)
144 PF13191 AAA_16: AAA ATPase do 92.2 0.1 2.2E-06 56.7 3.0 33 144-176 19-51 (185)
145 PF13851 GAS: Growth-arrest sp 92.0 21 0.00045 39.7 20.8 26 984-1009 97-122 (201)
146 TIGR02322 phosphon_PhnN phosph 91.9 0.11 2.4E-06 56.4 3.0 25 150-174 2-26 (179)
147 PRK10884 SH3 domain-containing 91.9 1.7 3.6E-05 48.3 12.0 78 971-1051 91-168 (206)
148 cd02019 NK Nucleoside/nucleoti 91.9 0.13 2.8E-06 46.6 2.9 22 152-173 2-23 (69)
149 PF05911 DUF869: Plant protein 91.8 32 0.00069 45.7 25.2 39 972-1010 119-157 (769)
150 KOG4360 Uncharacterized coiled 91.8 9 0.0002 46.8 18.4 8 1319-1326 508-515 (596)
151 PF10481 CENP-F_N: Cenp-F N-te 91.6 3.2 7E-05 46.6 13.6 41 1013-1053 93-133 (307)
152 PF04156 IncA: IncA protein; 91.6 5.8 0.00013 43.6 16.2 31 1013-1043 156-186 (191)
153 cd00009 AAA The AAA+ (ATPases 91.6 0.21 4.6E-06 51.2 4.6 29 146-174 16-44 (151)
154 TIGR03015 pepcterm_ATPase puta 91.6 0.17 3.7E-06 58.7 4.3 28 147-174 41-68 (269)
155 PF15397 DUF4618: Domain of un 91.5 31 0.00066 39.6 26.2 35 1018-1052 189-223 (258)
156 KOG0976 Rho/Rac1-interacting s 91.5 54 0.0012 42.3 35.7 52 990-1041 347-398 (1265)
157 KOG0982 Centrosomal protein Nu 91.4 9.6 0.00021 45.5 17.8 49 971-1019 302-350 (502)
158 PRK07196 fliI flagellum-specif 91.3 0.23 5E-06 61.1 5.1 43 131-173 137-179 (434)
159 PF15254 CCDC14: Coiled-coil d 91.3 57 0.0012 42.4 25.4 60 977-1036 491-550 (861)
160 PF10481 CENP-F_N: Cenp-F N-te 91.3 16 0.00034 41.4 18.3 29 1023-1051 163-191 (307)
161 KOG0994 Extracellular matrix g 91.3 68 0.0015 43.2 38.4 56 52-121 173-229 (1758)
162 PF10473 CENP-F_leu_zip: Leuci 91.2 16 0.00034 38.0 17.3 17 977-993 63-79 (140)
163 TIGR00150 HI0065_YjeE ATPase, 91.2 0.3 6.4E-06 50.3 4.9 27 147-173 20-46 (133)
164 PRK09270 nucleoside triphospha 91.2 0.32 6.9E-06 55.3 5.8 34 145-178 29-62 (229)
165 PTZ00121 MAEBL; Provisional 91.1 80 0.0017 43.7 35.6 33 65-97 162-194 (2084)
166 KOG1003 Actin filament-coating 91.1 26 0.00056 38.0 19.3 35 1012-1046 148-182 (205)
167 KOG1003 Actin filament-coating 91.1 26 0.00056 38.0 21.4 10 994-1003 144-153 (205)
168 PRK06696 uridine kinase; Valid 91.1 0.27 5.8E-06 55.7 5.0 40 134-175 9-48 (223)
169 COG5185 HEC1 Protein involved 91.0 19 0.00041 43.6 19.6 10 604-613 79-88 (622)
170 KOG1937 Uncharacterized conser 91.0 18 0.0004 43.6 19.6 79 973-1051 345-425 (521)
171 COG0444 DppD ABC-type dipeptid 90.9 0.14 3E-06 59.6 2.5 28 147-174 29-56 (316)
172 COG4942 Membrane-bound metallo 90.8 48 0.001 40.6 28.8 11 1025-1035 234-244 (420)
173 cd00820 PEPCK_HprK Phosphoenol 90.8 0.19 4E-06 49.7 2.9 23 148-170 14-36 (107)
174 TIGR01843 type_I_hlyD type I s 90.7 24 0.00052 43.8 22.5 25 979-1003 202-226 (423)
175 PRK05480 uridine/cytidine kina 90.7 0.2 4.4E-06 55.9 3.6 27 147-173 4-30 (209)
176 cd01918 HprK_C HprK/P, the bif 90.7 0.19 4.1E-06 52.7 3.1 25 148-172 13-37 (149)
177 PF00004 AAA: ATPase family as 90.6 0.17 3.6E-06 51.5 2.6 23 152-174 1-23 (132)
178 COG0194 Gmk Guanylate kinase [ 90.6 0.17 3.7E-06 54.4 2.5 26 148-173 3-28 (191)
179 cd01131 PilT Pilus retraction 90.5 0.18 3.8E-06 56.0 2.8 25 151-175 3-27 (198)
180 PRK13833 conjugal transfer pro 90.5 0.27 5.8E-06 58.5 4.4 34 140-175 137-170 (323)
181 PRK00300 gmk guanylate kinase; 90.5 0.18 3.9E-06 56.1 2.8 26 148-173 4-29 (205)
182 KOG0249 LAR-interacting protei 90.4 12 0.00026 47.5 18.2 20 1352-1379 756-775 (916)
183 PF01583 APS_kinase: Adenylyls 90.4 0.28 6.1E-06 51.9 4.0 29 149-177 2-30 (156)
184 PF10168 Nup88: Nuclear pore c 90.3 32 0.00069 45.7 23.4 51 541-592 377-432 (717)
185 PF05701 WEMBL: Weak chloropla 90.2 67 0.0014 41.3 32.6 69 985-1053 286-354 (522)
186 KOG4403 Cell surface glycoprot 90.2 32 0.00069 41.2 20.3 28 696-723 68-98 (575)
187 cd01129 PulE-GspE PulE/GspE Th 90.1 0.31 6.6E-06 56.6 4.5 34 140-174 72-105 (264)
188 cd02023 UMPK Uridine monophosp 90.1 0.2 4.3E-06 55.5 2.8 22 152-173 2-23 (198)
189 PF13870 DUF4201: Domain of un 90.0 32 0.0007 37.4 21.0 26 1017-1042 147-172 (177)
190 PF00485 PRK: Phosphoribulokin 90.0 0.2 4.4E-06 55.3 2.7 26 152-177 2-27 (194)
191 KOG2991 Splicing regulator [RN 89.8 38 0.00083 37.9 25.0 80 971-1050 215-306 (330)
192 KOG0946 ER-Golgi vesicle-tethe 89.8 21 0.00046 46.1 19.8 28 553-580 389-416 (970)
193 KOG2891 Surface glycoprotein [ 89.7 30 0.00065 38.9 18.7 28 654-681 107-138 (445)
194 PF06785 UPF0242: Uncharacteri 89.7 47 0.001 38.8 21.2 31 973-1003 134-164 (401)
195 TIGR00235 udk uridine kinase. 89.6 0.27 5.9E-06 54.9 3.5 28 147-174 4-31 (207)
196 PRK12402 replication factor C 89.4 0.45 9.7E-06 57.3 5.3 56 117-174 6-61 (337)
197 PRK08972 fliI flagellum-specif 89.3 0.61 1.3E-05 57.3 6.3 41 132-172 145-185 (444)
198 PF09730 BicD: Microtubule-ass 89.2 31 0.00066 45.3 21.4 10 1387-1396 552-561 (717)
199 TIGR03007 pepcterm_ChnLen poly 89.2 30 0.00064 44.2 21.9 17 971-987 252-268 (498)
200 PF04111 APG6: Autophagy prote 89.2 2.4 5.2E-05 50.4 11.0 9 1304-1312 289-297 (314)
201 PRK06547 hypothetical protein; 89.2 0.51 1.1E-05 51.1 5.0 28 146-173 12-39 (172)
202 COG3883 Uncharacterized protei 89.2 48 0.001 38.2 24.3 20 922-941 81-100 (265)
203 PRK05541 adenylylsulfate kinas 89.2 0.28 6E-06 53.2 3.0 29 147-175 5-33 (176)
204 smart00382 AAA ATPases associa 89.1 0.25 5.3E-06 50.1 2.4 28 149-176 2-29 (148)
205 KOG0963 Transcription factor/C 89.1 76 0.0017 40.4 24.4 10 976-985 252-261 (629)
206 TIGR02173 cyt_kin_arch cytidyl 89.1 0.25 5.4E-06 53.0 2.5 23 151-173 2-24 (171)
207 PRK08233 hypothetical protein; 89.0 0.23 5E-06 53.9 2.3 26 149-174 3-28 (182)
208 PTZ00301 uridine kinase; Provi 89.0 0.28 6E-06 54.9 2.9 24 151-174 5-28 (210)
209 cd02020 CMPK Cytidine monophos 89.0 0.29 6.2E-06 51.0 2.9 22 152-173 2-23 (147)
210 TIGR01843 type_I_hlyD type I s 89.0 23 0.0005 44.0 20.3 32 973-1004 203-234 (423)
211 TIGR03420 DnaA_homol_Hda DnaA 89.0 0.55 1.2E-05 53.0 5.3 38 138-175 27-64 (226)
212 PF05010 TACC: Transforming ac 89.0 43 0.00093 37.3 23.4 14 1032-1045 178-191 (207)
213 PRK06762 hypothetical protein; 89.0 0.34 7.4E-06 51.9 3.5 25 149-173 2-26 (166)
214 PHA02544 44 clamp loader, smal 88.9 0.43 9.2E-06 57.0 4.6 53 117-173 12-67 (316)
215 KOG0982 Centrosomal protein Nu 88.8 63 0.0014 39.0 23.7 26 1018-1043 406-431 (502)
216 PF10174 Cast: RIM-binding pro 88.7 1E+02 0.0022 41.3 32.1 15 607-621 152-166 (775)
217 cd02028 UMPK_like Uridine mono 88.7 0.31 6.7E-06 53.1 2.9 24 152-175 2-25 (179)
218 COG1660 Predicted P-loop-conta 88.7 0.26 5.5E-06 55.4 2.2 19 151-169 3-21 (286)
219 cd02025 PanK Pantothenate kina 88.6 0.3 6.5E-06 55.1 2.8 24 152-175 2-25 (220)
220 PF07724 AAA_2: AAA domain (Cd 88.6 0.36 7.9E-06 52.2 3.3 24 151-174 5-28 (171)
221 PRK07261 topology modulation p 88.6 0.32 6.9E-06 52.6 2.9 23 151-173 2-24 (171)
222 PF00038 Filament: Intermediat 88.5 61 0.0013 38.6 35.5 18 745-762 12-29 (312)
223 cd00227 CPT Chloramphenicol (C 88.5 0.36 7.8E-06 52.3 3.3 25 149-173 2-26 (175)
224 PF03668 ATP_bind_2: P-loop AT 88.3 0.3 6.5E-06 56.3 2.6 20 150-169 2-21 (284)
225 KOG1103 Predicted coiled-coil 88.3 57 0.0012 37.9 21.1 39 1013-1051 243-281 (561)
226 KOG0964 Structural maintenance 88.3 1.1E+02 0.0023 41.0 31.6 18 1417-1434 998-1015(1200)
227 PRK08118 topology modulation p 88.2 0.36 7.8E-06 52.0 3.0 25 150-174 2-26 (167)
228 cd01130 VirB11-like_ATPase Typ 88.1 0.32 6.9E-06 53.4 2.6 25 149-173 25-49 (186)
229 PF04111 APG6: Autophagy prote 88.1 4.6 0.0001 48.1 12.4 30 977-1006 54-83 (314)
230 KOG4809 Rab6 GTPase-interactin 88.0 60 0.0013 40.4 21.2 37 882-918 331-367 (654)
231 PRK00131 aroK shikimate kinase 88.0 0.41 8.9E-06 51.4 3.3 26 148-173 3-28 (175)
232 PRK14737 gmk guanylate kinase; 87.9 0.33 7.1E-06 53.3 2.5 26 148-173 3-28 (186)
233 PF00910 RNA_helicase: RNA hel 87.8 0.37 8E-06 47.7 2.6 25 152-176 1-25 (107)
234 PRK10078 ribose 1,5-bisphospho 87.7 0.32 6.9E-06 53.3 2.3 25 149-173 2-26 (186)
235 TIGR02782 TrbB_P P-type conjug 87.7 0.7 1.5E-05 54.7 5.3 27 149-175 132-158 (299)
236 cd00071 GMPK Guanosine monopho 87.6 0.32 6.9E-06 50.6 2.1 22 152-173 2-23 (137)
237 KOG0804 Cytoplasmic Zn-finger 87.3 18 0.00038 43.8 16.1 15 657-671 102-116 (493)
238 PRK08084 DNA replication initi 87.3 0.84 1.8E-05 52.1 5.5 40 136-175 32-71 (235)
239 TIGR01420 pilT_fam pilus retra 87.3 0.38 8.3E-06 58.1 2.8 26 149-174 122-147 (343)
240 cd02024 NRK1 Nicotinamide ribo 87.2 0.38 8.2E-06 52.7 2.5 22 152-173 2-23 (187)
241 PF04437 RINT1_TIP1: RINT-1 / 87.2 9.7 0.00021 48.5 15.5 124 1301-1430 353-491 (494)
242 PRK08472 fliI flagellum-specif 87.2 1.6 3.4E-05 54.0 7.9 42 132-173 140-181 (434)
243 KOG0979 Structural maintenance 87.1 55 0.0012 43.7 21.5 10 669-678 23-32 (1072)
244 TIGR01313 therm_gnt_kin carboh 87.1 0.33 7.2E-06 51.8 1.9 23 152-174 1-23 (163)
245 PRK00889 adenylylsulfate kinas 87.1 0.63 1.4E-05 50.4 4.1 29 148-176 3-31 (175)
246 PRK13851 type IV secretion sys 87.1 0.47 1E-05 57.0 3.4 26 149-174 162-187 (344)
247 PF05729 NACHT: NACHT domain 87.0 0.5 1.1E-05 50.0 3.3 27 151-177 2-28 (166)
248 KOG1899 LAR transmembrane tyro 87.0 18 0.00039 45.1 16.3 21 1358-1378 707-727 (861)
249 PRK14738 gmk guanylate kinase; 86.9 0.46 9.9E-06 53.1 3.0 26 147-172 11-36 (206)
250 PF12846 AAA_10: AAA-like doma 86.9 0.48 1E-05 55.7 3.4 29 149-177 1-29 (304)
251 PF09789 DUF2353: Uncharacteri 86.9 74 0.0016 37.8 24.9 34 1017-1050 191-224 (319)
252 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.9 41 0.00088 34.8 19.7 28 1012-1039 102-129 (132)
253 PF13245 AAA_19: Part of AAA d 86.9 0.75 1.6E-05 42.6 3.9 28 148-175 9-36 (76)
254 TIGR00554 panK_bact pantothena 86.8 0.92 2E-05 53.2 5.5 30 146-175 59-88 (290)
255 TIGR02928 orc1/cdc6 family rep 86.8 0.63 1.4E-05 56.7 4.4 36 140-175 31-66 (365)
256 PF06785 UPF0242: Uncharacteri 86.8 70 0.0015 37.4 20.2 16 1119-1134 309-324 (401)
257 PRK09099 type III secretion sy 86.8 1.2 2.6E-05 55.2 6.7 37 137-173 151-187 (441)
258 PF10186 Atg14: UV radiation r 86.8 17 0.00036 43.0 16.4 74 976-1049 73-146 (302)
259 PF08614 ATG16: Autophagy prot 86.8 6.7 0.00014 43.4 12.0 65 972-1036 115-179 (194)
260 PF05911 DUF869: Plant protein 86.7 63 0.0014 43.0 22.4 66 974-1039 100-165 (769)
261 PLN03025 replication factor C 86.7 0.77 1.7E-05 54.9 5.0 56 117-174 4-59 (319)
262 PTZ00112 origin recognition co 86.7 1.1 2.4E-05 58.5 6.5 45 132-176 764-808 (1164)
263 TIGR02524 dot_icm_DotB Dot/Icm 86.6 0.45 9.8E-06 57.6 2.9 28 148-175 133-160 (358)
264 PF10212 TTKRSYEDQ: Predicted 86.5 66 0.0014 40.3 20.9 23 1027-1049 492-514 (518)
265 PRK13900 type IV secretion sys 86.5 0.64 1.4E-05 55.8 4.1 30 143-174 156-185 (332)
266 PRK14961 DNA polymerase III su 86.4 1.1 2.4E-05 54.6 6.2 55 117-175 7-64 (363)
267 TIGR03263 guanyl_kin guanylate 86.4 0.37 8.1E-06 52.3 1.9 24 150-173 2-25 (180)
268 PRK10884 SH3 domain-containing 86.3 5.9 0.00013 44.1 11.1 73 977-1052 90-162 (206)
269 COG1102 Cmk Cytidylate kinase 86.3 0.54 1.2E-05 49.3 2.8 23 152-174 3-25 (179)
270 PRK06315 type III secretion sy 86.3 1 2.2E-05 55.7 5.7 39 135-173 150-188 (442)
271 KOG0994 Extracellular matrix g 86.3 1.4E+02 0.0031 40.4 34.8 35 1015-1049 1710-1744(1758)
272 PLN03188 kinesin-12 family pro 86.2 59 0.0013 44.7 21.7 37 130-166 147-183 (1320)
273 cd02027 APSK Adenosine 5'-phos 86.2 0.54 1.2E-05 49.6 2.9 24 152-175 2-25 (149)
274 PRK12377 putative replication 86.2 1.1 2.4E-05 51.5 5.6 45 130-176 84-128 (248)
275 PRK01156 chromosome segregatio 86.1 1.6E+02 0.0034 40.8 35.5 28 1024-1051 411-438 (895)
276 COG4608 AppF ABC-type oligopep 86.1 0.48 1E-05 54.1 2.5 31 147-177 37-67 (268)
277 PRK14964 DNA polymerase III su 85.9 0.85 1.8E-05 57.2 4.9 58 117-177 4-63 (491)
278 PF00769 ERM: Ezrin/radixin/mo 85.9 22 0.00048 40.9 15.9 31 1011-1041 78-108 (246)
279 PF08826 DMPK_coil: DMPK coile 85.9 8.4 0.00018 34.0 9.5 44 999-1042 16-59 (61)
280 PF07888 CALCOCO1: Calcium bin 85.9 1.1E+02 0.0024 38.8 45.0 83 971-1053 369-455 (546)
281 PRK06217 hypothetical protein; 85.8 0.5 1.1E-05 51.6 2.5 24 151-174 3-26 (183)
282 PRK12704 phosphodiesterase; Pr 85.8 29 0.00063 44.4 18.4 13 1389-1401 416-428 (520)
283 PRK11281 hypothetical protein; 85.7 63 0.0014 45.0 22.5 8 1044-1051 286-293 (1113)
284 TIGR02525 plasmid_TraJ plasmid 85.7 0.54 1.2E-05 57.1 2.9 27 149-175 149-175 (372)
285 COG4172 ABC-type uncharacteriz 85.5 0.44 9.5E-06 56.6 1.9 28 149-176 36-63 (534)
286 PF13671 AAA_33: AAA domain; P 85.5 0.47 1E-05 49.2 2.0 23 152-174 2-24 (143)
287 PF00437 T2SE: Type II/IV secr 85.5 0.52 1.1E-05 55.0 2.6 28 148-175 126-153 (270)
288 PF01576 Myosin_tail_1: Myosin 85.4 0.26 5.5E-06 66.5 0.0 43 877-919 27-69 (859)
289 cd01120 RecA-like_NTPases RecA 85.4 0.63 1.4E-05 48.9 3.0 24 152-175 2-25 (165)
290 COG1125 OpuBA ABC-type proline 85.4 0.5 1.1E-05 53.0 2.2 25 150-174 28-52 (309)
291 PRK03846 adenylylsulfate kinas 85.4 0.89 1.9E-05 50.4 4.3 32 145-176 20-51 (198)
292 PRK10751 molybdopterin-guanine 85.4 0.63 1.4E-05 50.2 2.9 27 150-176 7-33 (173)
293 PF15254 CCDC14: Coiled-coil d 85.4 42 0.00091 43.5 18.8 33 882-914 427-459 (861)
294 PRK14956 DNA polymerase III su 85.4 1 2.3E-05 56.0 5.2 55 118-176 10-67 (484)
295 COG0572 Udk Uridine kinase [Nu 85.3 0.6 1.3E-05 51.9 2.8 24 151-174 10-33 (218)
296 COG2433 Uncharacterized conser 85.2 7.2 0.00016 48.8 11.9 34 1016-1049 475-508 (652)
297 cd00464 SK Shikimate kinase (S 85.1 0.59 1.3E-05 49.1 2.6 24 151-174 1-24 (154)
298 KOG0249 LAR-interacting protei 84.9 55 0.0012 41.9 19.2 13 1311-1323 718-730 (916)
299 PRK00440 rfc replication facto 84.9 1 2.2E-05 53.6 4.9 55 118-174 9-63 (319)
300 TIGR03319 YmdA_YtgF conserved 84.9 42 0.0009 42.9 19.2 16 1387-1402 408-423 (514)
301 KOG1962 B-cell receptor-associ 84.9 5.5 0.00012 44.1 9.8 61 978-1038 149-209 (216)
302 PRK00411 cdc6 cell division co 84.8 0.97 2.1E-05 55.7 4.7 33 143-175 49-81 (394)
303 COG3074 Uncharacterized protei 84.7 7.4 0.00016 34.5 8.4 43 1009-1051 19-61 (79)
304 PF10146 zf-C4H2: Zinc finger- 84.7 9.2 0.0002 43.2 11.8 30 974-1003 40-69 (230)
305 PRK06645 DNA polymerase III su 84.7 1.2 2.5E-05 56.5 5.3 56 118-176 13-70 (507)
306 PRK08903 DnaA regulatory inact 84.6 1.3 2.8E-05 50.1 5.3 29 147-175 40-68 (227)
307 TIGR01005 eps_transp_fam exopo 84.6 1.7E+02 0.0036 39.7 27.7 11 697-707 86-96 (754)
308 TIGR02902 spore_lonB ATP-depen 84.5 1.1 2.3E-05 57.5 4.9 31 144-174 81-111 (531)
309 COG0563 Adk Adenylate kinase a 84.4 0.71 1.5E-05 50.2 2.8 22 152-173 3-24 (178)
310 cd02021 GntK Gluconate kinase 84.2 0.65 1.4E-05 48.8 2.4 22 152-173 2-23 (150)
311 PF03266 NTPase_1: NTPase; In 84.1 0.77 1.7E-05 49.5 3.0 24 152-175 2-25 (168)
312 PRK00106 hypothetical protein; 84.1 1.1E+02 0.0025 39.1 22.1 146 898-1056 21-166 (535)
313 PRK07721 fliI flagellum-specif 84.1 3.5 7.6E-05 51.3 9.0 42 132-173 141-182 (438)
314 TIGR01005 eps_transp_fam exopo 83.9 50 0.0011 44.6 20.6 18 1412-1429 659-676 (754)
315 PF10146 zf-C4H2: Zinc finger- 83.8 12 0.00027 42.2 12.3 73 972-1051 31-103 (230)
316 PRK05342 clpX ATP-dependent pr 83.8 1.6 3.5E-05 53.9 5.9 63 111-173 59-132 (412)
317 COG5185 HEC1 Protein involved 83.8 1.2E+02 0.0025 37.2 24.3 14 603-616 75-88 (622)
318 PF02367 UPF0079: Uncharacteri 83.7 0.83 1.8E-05 46.4 2.8 27 147-173 13-39 (123)
319 TIGR02533 type_II_gspE general 83.7 0.94 2E-05 57.2 3.9 35 139-174 233-267 (486)
320 PF06008 Laminin_I: Laminin Do 83.7 92 0.002 36.2 20.1 63 978-1040 183-245 (264)
321 PRK09825 idnK D-gluconate kina 83.7 0.85 1.8E-05 49.6 3.1 26 149-174 3-28 (176)
322 PF10234 Cluap1: Clusterin-ass 83.6 24 0.00052 40.7 14.6 14 664-677 2-15 (267)
323 PF03205 MobB: Molybdopterin g 83.6 0.89 1.9E-05 47.4 3.1 27 151-177 2-28 (140)
324 COG0529 CysC Adenylylsulfate k 83.6 1.5 3.2E-05 46.9 4.6 43 134-177 9-51 (197)
325 PHA00729 NTP-binding motif con 83.6 1.5 3.2E-05 49.3 5.0 38 136-174 5-42 (226)
326 PRK05057 aroK shikimate kinase 83.6 0.84 1.8E-05 49.4 3.0 25 149-173 4-28 (172)
327 smart00333 TUDOR Tudor domain. 83.5 3.2 6.8E-05 35.8 6.0 51 6-56 2-54 (57)
328 PF00769 ERM: Ezrin/radixin/mo 83.5 22 0.00047 40.9 14.4 71 982-1052 56-126 (246)
329 PF10498 IFT57: Intra-flagella 83.5 16 0.00035 44.2 14.0 9 638-646 62-70 (359)
330 PRK05896 DNA polymerase III su 83.4 1.6 3.4E-05 56.0 5.7 60 116-177 6-66 (605)
331 PRK13764 ATPase; Provisional 83.4 0.89 1.9E-05 58.3 3.5 27 149-175 257-283 (602)
332 cd02029 PRK_like Phosphoribulo 83.3 0.91 2E-05 52.1 3.2 24 152-175 2-25 (277)
333 PRK04182 cytidylate kinase; Pr 83.2 0.76 1.6E-05 49.7 2.5 23 151-173 2-24 (180)
334 COG1123 ATPase components of v 83.1 0.65 1.4E-05 58.2 2.1 30 147-176 33-62 (539)
335 PF07475 Hpr_kinase_C: HPr Ser 83.1 0.83 1.8E-05 48.8 2.6 23 149-171 18-40 (171)
336 PRK09111 DNA polymerase III su 83.1 1 2.2E-05 58.3 3.8 55 118-176 16-73 (598)
337 COG1124 DppF ABC-type dipeptid 83.0 0.87 1.9E-05 51.1 2.8 29 147-175 31-59 (252)
338 TIGR01360 aden_kin_iso1 adenyl 83.0 0.87 1.9E-05 49.7 2.9 23 151-173 5-27 (188)
339 KOG2129 Uncharacterized conser 82.8 1.2E+02 0.0025 36.6 20.1 11 833-843 85-95 (552)
340 COG2884 FtsE Predicted ATPase 82.8 0.84 1.8E-05 49.2 2.5 25 148-172 27-51 (223)
341 PRK04040 adenylate kinase; Pro 82.7 1 2.2E-05 49.6 3.2 25 150-174 3-27 (188)
342 PF13555 AAA_29: P-loop contai 82.5 1.3 2.8E-05 39.3 3.1 20 151-170 25-44 (62)
343 KOG4364 Chromatin assembly fac 82.5 36 0.00078 43.1 16.2 16 567-582 52-67 (811)
344 PRK07667 uridine kinase; Provi 82.4 1.7 3.6E-05 48.1 4.8 26 150-175 18-43 (193)
345 PF14197 Cep57_CLD_2: Centroso 82.4 12 0.00026 34.1 9.2 64 978-1041 3-66 (69)
346 PRK13342 recombination factor 82.3 1.4 3.1E-05 54.6 4.8 43 130-173 18-60 (413)
347 PRK14527 adenylate kinase; Pro 82.1 1.1 2.5E-05 49.2 3.4 28 147-174 4-31 (191)
348 PRK06761 hypothetical protein; 82.1 0.87 1.9E-05 53.1 2.5 26 150-175 4-29 (282)
349 PRK05416 glmZ(sRNA)-inactivati 82.0 0.89 1.9E-05 53.3 2.6 21 149-169 6-26 (288)
350 PRK13894 conjugal transfer ATP 82.0 0.98 2.1E-05 53.8 3.0 27 149-175 148-174 (319)
351 cd03115 SRP The signal recogni 82.0 1.3 2.8E-05 47.9 3.7 27 151-177 2-28 (173)
352 PF11559 ADIP: Afadin- and alp 82.0 19 0.00042 38.0 12.5 10 1041-1050 138-147 (151)
353 PF03215 Rad17: Rad17 cell cyc 81.9 1.3 2.8E-05 56.2 4.1 58 116-173 9-69 (519)
354 KOG4673 Transcription factor T 81.9 1.6E+02 0.0036 37.7 41.0 19 921-939 612-630 (961)
355 PRK14957 DNA polymerase III su 81.9 1.9 4.2E-05 54.9 5.7 55 117-175 7-64 (546)
356 PRK14732 coaE dephospho-CoA ki 81.8 1.1 2.4E-05 49.5 3.2 47 152-203 2-53 (196)
357 KOG0056 Heavy metal exporter H 81.7 1.2 2.7E-05 53.8 3.6 42 147-188 562-603 (790)
358 PRK14974 cell division protein 81.7 2.3 4.9E-05 51.1 5.9 31 147-177 138-168 (336)
359 PF07728 AAA_5: AAA domain (dy 81.7 1 2.2E-05 46.6 2.7 22 152-173 2-23 (139)
360 KOG4460 Nuclear pore complex, 81.6 74 0.0016 39.5 18.0 18 544-562 412-429 (741)
361 COG0802 Predicted ATPase or ki 81.6 2.5 5.3E-05 44.2 5.3 29 147-175 23-51 (149)
362 PRK14955 DNA polymerase III su 81.6 2 4.3E-05 53.2 5.5 56 118-175 8-64 (397)
363 TIGR03499 FlhF flagellar biosy 81.4 1.3 2.8E-05 52.0 3.8 45 132-176 169-221 (282)
364 PRK06893 DNA replication initi 81.4 2.2 4.7E-05 48.5 5.4 40 136-176 27-66 (229)
365 PRK15453 phosphoribulokinase; 81.4 1.1 2.3E-05 51.9 2.9 26 148-173 4-29 (290)
366 PRK06002 fliI flagellum-specif 81.4 1.3 2.9E-05 54.6 3.9 33 6-39 46-78 (450)
367 TIGR02680 conserved hypothetic 81.4 2.9E+02 0.0062 40.1 31.6 27 150-176 25-51 (1353)
368 TIGR01000 bacteriocin_acc bact 81.4 87 0.0019 39.6 20.2 27 1026-1052 288-314 (457)
369 TIGR02546 III_secr_ATP type II 81.3 3.2 7E-05 51.5 7.2 39 135-173 131-169 (422)
370 KOG2991 Splicing regulator [RN 81.2 1E+02 0.0022 34.8 27.4 57 983-1039 253-309 (330)
371 TIGR02903 spore_lon_C ATP-depe 81.2 1.8 3.9E-05 56.4 5.3 36 141-176 167-202 (615)
372 PRK05537 bifunctional sulfate 81.2 1.5 3.2E-05 56.6 4.4 45 129-175 374-418 (568)
373 KOG1962 B-cell receptor-associ 81.1 5.8 0.00013 43.9 8.2 34 1017-1050 174-207 (216)
374 COG4172 ABC-type uncharacteriz 81.1 0.93 2E-05 54.0 2.3 30 147-176 311-340 (534)
375 PRK14969 DNA polymerase III su 81.0 1.9 4E-05 55.2 5.2 55 117-175 7-64 (527)
376 PRK08727 hypothetical protein; 81.0 2.2 4.7E-05 48.7 5.2 31 146-176 38-68 (233)
377 PRK08356 hypothetical protein; 80.9 0.97 2.1E-05 49.9 2.3 22 150-171 6-27 (195)
378 PRK08116 hypothetical protein; 80.9 2.5 5.4E-05 49.3 5.7 47 130-176 94-141 (268)
379 KOG0243 Kinesin-like protein [ 80.8 1.8E+02 0.0038 39.7 22.6 13 312-324 105-117 (1041)
380 PF10186 Atg14: UV radiation r 80.8 29 0.00063 40.9 15.0 13 1169-1181 202-214 (302)
381 COG1382 GimC Prefoldin, chaper 80.7 28 0.00061 35.0 12.0 39 1010-1048 72-110 (119)
382 COG1493 HprK Serine kinase of 80.7 1.2 2.6E-05 51.3 2.9 24 149-172 145-168 (308)
383 PF00308 Bac_DnaA: Bacterial d 80.5 2.3 5E-05 48.0 5.2 41 136-176 19-61 (219)
384 PRK15422 septal ring assembly 80.5 11 0.00023 34.8 8.1 56 996-1051 6-61 (79)
385 cd02034 CooC The accessory pro 80.5 1.6 3.4E-05 44.0 3.4 25 152-176 2-26 (116)
386 TIGR00176 mobB molybdopterin-g 80.5 1.4 3E-05 46.8 3.2 26 152-177 2-27 (155)
387 PF03193 DUF258: Protein of un 80.4 1.4 3E-05 47.0 3.1 24 148-171 34-57 (161)
388 TIGR00064 ftsY signal recognit 80.4 2.9 6.3E-05 48.8 6.1 47 131-177 45-100 (272)
389 TIGR03689 pup_AAA proteasome A 80.4 6.8 0.00015 49.6 9.6 27 148-174 215-241 (512)
390 PRK10416 signal recognition pa 80.3 1.6 3.5E-05 52.1 4.0 31 147-177 112-142 (318)
391 cd03293 ABC_NrtD_SsuB_transpor 80.3 1.2 2.5E-05 50.3 2.7 27 147-173 28-54 (220)
392 PRK14528 adenylate kinase; Pro 80.3 1.3 2.9E-05 48.5 3.1 24 150-173 2-25 (186)
393 PRK14959 DNA polymerase III su 80.3 1.9 4.2E-05 55.4 4.9 55 117-175 7-64 (624)
394 KOG4807 F-actin binding protei 80.2 1.1E+02 0.0023 36.5 18.0 35 1011-1045 445-479 (593)
395 PRK15093 antimicrobial peptide 80.2 1.2 2.6E-05 53.6 2.9 27 147-173 31-57 (330)
396 PRK09112 DNA polymerase III su 80.2 2.1 4.6E-05 51.8 5.0 40 136-175 31-71 (351)
397 PF12325 TMF_TATA_bd: TATA ele 80.2 22 0.00048 36.0 11.3 36 1013-1048 73-108 (120)
398 PF00625 Guanylate_kin: Guanyl 80.2 1.4 3E-05 48.2 3.1 26 149-174 2-27 (183)
399 PRK00698 tmk thymidylate kinas 80.1 1.7 3.6E-05 48.2 3.8 28 149-176 3-30 (205)
400 PRK14963 DNA polymerase III su 80.1 1.8 4E-05 54.9 4.6 56 118-176 6-63 (504)
401 TIGR01026 fliI_yscN ATPase Fli 80.1 3.4 7.4E-05 51.4 6.9 40 133-172 147-186 (440)
402 PRK06936 type III secretion sy 80.1 1.5 3.4E-05 54.0 3.8 41 133-173 146-186 (439)
403 PF05010 TACC: Transforming ac 80.1 1.1E+02 0.0023 34.3 22.7 18 1027-1044 166-183 (207)
404 PRK11308 dppF dipeptide transp 80.1 1.2 2.6E-05 53.4 2.9 27 147-173 39-65 (327)
405 TIGR02868 CydC thiol reductant 80.1 0.89 1.9E-05 58.5 1.9 28 147-174 359-386 (529)
406 TIGR02788 VirB11 P-type DNA tr 80.0 0.99 2.1E-05 53.7 2.1 25 149-173 144-168 (308)
407 PRK08154 anaerobic benzoate ca 80.0 2.1 4.6E-05 51.0 4.9 48 126-173 106-157 (309)
408 TIGR00634 recN DNA repair prot 80.0 53 0.0011 42.7 18.0 7 713-719 105-111 (563)
409 COG2805 PilT Tfp pilus assembl 80.0 1.3 2.9E-05 51.0 2.9 75 87-175 70-151 (353)
410 PRK04195 replication factor C 79.9 1.7 3.7E-05 55.1 4.3 27 147-173 37-63 (482)
411 COG0419 SbcC ATPase involved i 79.9 2.2E+02 0.0049 39.3 24.9 173 875-1054 270-442 (908)
412 PRK15177 Vi polysaccharide exp 79.9 1.3 2.8E-05 49.7 2.9 27 147-173 11-37 (213)
413 TIGR02673 FtsE cell division A 79.9 1.3 2.8E-05 49.6 2.9 27 147-173 26-52 (214)
414 TIGR00455 apsK adenylylsulfate 79.9 2.1 4.5E-05 46.8 4.4 29 147-175 16-44 (184)
415 PF09730 BicD: Microtubule-ass 79.8 2.1E+02 0.0046 37.9 22.7 11 1165-1175 394-404 (717)
416 TIGR01166 cbiO cobalt transpor 79.8 1.3 2.9E-05 48.6 2.9 25 147-171 16-40 (190)
417 TIGR02881 spore_V_K stage V sp 79.8 1.5 3.1E-05 51.0 3.4 31 147-177 40-70 (261)
418 PF04665 Pox_A32: Poxvirus A32 79.8 1.3 2.8E-05 50.4 2.8 26 150-175 14-39 (241)
419 TIGR00960 3a0501s02 Type II (G 79.7 1.3 2.8E-05 49.7 2.8 27 147-173 27-53 (216)
420 KOG1899 LAR transmembrane tyro 79.7 42 0.0009 42.2 15.3 15 1256-1270 563-577 (861)
421 PRK04220 2-phosphoglycerate ki 79.5 2 4.4E-05 50.3 4.4 27 147-173 90-116 (301)
422 PF00005 ABC_tran: ABC transpo 79.5 1.2 2.7E-05 45.7 2.4 26 148-173 10-35 (137)
423 cd03260 ABC_PstB_phosphate_tra 79.4 1.4 3E-05 49.9 3.0 27 147-173 24-50 (227)
424 PRK14970 DNA polymerase III su 79.4 3 6.6E-05 50.9 6.1 58 116-175 7-65 (367)
425 PF05557 MAD: Mitotic checkpoi 79.4 0.6 1.3E-05 62.2 0.0 16 1036-1051 305-320 (722)
426 cd03225 ABC_cobalt_CbiO_domain 79.3 1.4 3E-05 49.2 3.0 27 147-173 25-51 (211)
427 PRK15079 oligopeptide ABC tran 79.3 1.3 2.8E-05 53.2 2.9 27 147-173 45-71 (331)
428 PRK09473 oppD oligopeptide tra 79.3 1.2 2.7E-05 53.4 2.7 27 147-173 40-66 (330)
429 PRK12608 transcription termina 79.2 1.8 4E-05 52.1 4.0 42 134-175 118-159 (380)
430 TIGR01359 UMP_CMP_kin_fam UMP- 79.2 1.4 2.9E-05 48.0 2.7 23 152-174 2-24 (183)
431 PRK10646 ADP-binding protein; 79.2 3.2 7E-05 43.8 5.3 26 149-174 28-53 (153)
432 cd03259 ABC_Carb_Solutes_like 79.1 1.4 3.1E-05 49.2 2.9 27 147-173 24-50 (213)
433 PF15397 DUF4618: Domain of un 79.1 1.3E+02 0.0028 34.7 30.6 30 1017-1046 195-224 (258)
434 PF08172 CASP_C: CASP C termin 79.1 17 0.00037 41.7 11.4 42 1011-1052 89-130 (248)
435 TIGR00678 holB DNA polymerase 79.0 2.5 5.4E-05 46.3 4.8 36 140-175 4-40 (188)
436 PF00158 Sigma54_activat: Sigm 79.0 1.3 2.8E-05 47.8 2.4 25 147-171 20-44 (168)
437 cd03116 MobB Molybdenum is an 78.9 1.9 4.1E-05 46.1 3.6 28 150-177 2-29 (159)
438 COG1123 ATPase components of v 78.9 1.4 2.9E-05 55.4 2.9 29 147-175 315-343 (539)
439 COG2274 SunT ABC-type bacterio 78.9 1 2.3E-05 59.1 2.0 30 147-176 497-526 (709)
440 PRK06835 DNA replication prote 78.8 3.4 7.3E-05 49.6 6.1 29 148-176 182-210 (329)
441 COG4619 ABC-type uncharacteriz 78.8 1.4 3E-05 46.6 2.4 24 148-171 28-51 (223)
442 PRK05201 hslU ATP-dependent pr 78.8 3.6 7.9E-05 50.3 6.3 61 113-173 5-74 (443)
443 PLN02939 transferase, transfer 78.8 48 0.001 45.0 16.9 27 1424-1452 852-879 (977)
444 PRK10929 putative mechanosensi 78.7 1.6E+02 0.0034 41.2 22.1 11 1043-1053 265-275 (1109)
445 PF12777 MT: Microtubule-bindi 78.7 1.2E+02 0.0027 36.7 19.5 40 1011-1050 238-277 (344)
446 TIGR01000 bacteriocin_acc bact 78.7 1.3E+02 0.0029 38.0 20.5 25 1019-1043 288-312 (457)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 78.6 1.5 3.2E-05 49.3 2.9 27 147-173 28-54 (218)
448 PRK13768 GTPase; Provisional 78.6 1.7 3.6E-05 50.3 3.3 27 151-177 4-30 (253)
449 PRK14962 DNA polymerase III su 78.5 2.8 6.1E-05 52.8 5.5 54 118-175 6-62 (472)
450 TIGR03608 L_ocin_972_ABC putat 78.5 1.5 3.2E-05 48.7 2.8 27 147-173 22-48 (206)
451 TIGR02880 cbbX_cfxQ probable R 78.5 1.6 3.4E-05 51.3 3.2 28 151-178 60-87 (284)
452 COG4088 Predicted nucleotide k 78.4 2.2 4.9E-05 46.5 3.9 103 151-262 3-111 (261)
453 PF03962 Mnd1: Mnd1 family; I 78.3 20 0.00044 39.3 11.4 81 972-1053 68-152 (188)
454 PF01576 Myosin_tail_1: Myosin 78.3 0.67 1.5E-05 62.5 0.0 26 884-909 456-481 (859)
455 PRK11022 dppD dipeptide transp 78.3 1.4 3.1E-05 52.8 2.8 27 147-173 31-57 (326)
456 TIGR03497 FliI_clade2 flagella 78.3 4.2 9E-05 50.2 6.8 37 137-173 125-161 (413)
457 cd03229 ABC_Class3 This class 78.3 1.6 3.5E-05 47.4 2.9 27 147-173 24-50 (178)
458 PRK14531 adenylate kinase; Pro 78.3 1.7 3.7E-05 47.5 3.2 25 150-174 3-27 (183)
459 PRK06921 hypothetical protein; 78.2 2.1 4.5E-05 49.8 4.0 28 148-175 116-143 (266)
460 PLN02796 D-glycerate 3-kinase 78.2 1.5 3.2E-05 52.4 2.8 25 150-174 101-125 (347)
461 cd03296 ABC_CysA_sulfate_impor 78.2 1.6 3.4E-05 50.0 2.9 27 147-173 26-52 (239)
462 PRK00023 cmk cytidylate kinase 78.1 1.6 3.4E-05 49.5 2.9 26 149-174 4-29 (225)
463 PF13479 AAA_24: AAA domain 78.1 1.3 2.9E-05 49.6 2.3 22 148-169 2-23 (213)
464 PRK03839 putative kinase; Prov 78.1 1.6 3.4E-05 47.5 2.8 23 151-173 2-24 (180)
465 PRK13341 recombination factor 78.1 2.6 5.5E-05 55.8 5.2 36 138-173 41-76 (725)
466 PRK14950 DNA polymerase III su 78.1 2.8 6.2E-05 54.4 5.6 56 118-176 8-65 (585)
467 PRK10436 hypothetical protein; 78.0 1.5 3.2E-05 55.0 2.8 34 140-174 210-243 (462)
468 cd01124 KaiC KaiC is a circadi 78.0 1.7 3.7E-05 47.2 3.1 26 151-176 1-26 (187)
469 PF14988 DUF4515: Domain of un 78.0 1.2E+02 0.0027 33.8 25.6 35 1016-1050 164-198 (206)
470 TIGR03574 selen_PSTK L-seryl-t 78.0 1.6 3.4E-05 50.3 2.9 24 152-175 2-25 (249)
471 smart00072 GuKc Guanylate kina 78.0 1.5 3.2E-05 48.0 2.5 23 151-173 4-26 (184)
472 cd02026 PRK Phosphoribulokinas 77.9 1.5 3.3E-05 51.1 2.7 22 152-173 2-23 (273)
473 cd01983 Fer4_NifH The Fer4_Nif 77.9 2.1 4.5E-05 40.5 3.3 25 152-176 2-26 (99)
474 cd04508 TUDOR Tudor domains ar 77.8 4.8 0.0001 33.3 5.0 43 10-52 1-46 (48)
475 cd03235 ABC_Metallic_Cations A 77.8 1.5 3.3E-05 49.0 2.6 27 147-173 23-49 (213)
476 PHA02530 pseT polynucleotide k 77.7 1.5 3.3E-05 51.8 2.8 24 150-173 3-26 (300)
477 PF01695 IstB_IS21: IstB-like 77.6 3.1 6.7E-05 45.3 4.9 29 147-175 45-73 (178)
478 cd03292 ABC_FtsE_transporter F 77.6 1.6 3.6E-05 48.7 2.9 27 147-173 25-51 (214)
479 cd03258 ABC_MetN_methionine_tr 77.6 1.7 3.6E-05 49.5 2.9 27 147-173 29-55 (233)
480 TIGR00382 clpX endopeptidase C 77.5 3.6 7.9E-05 50.6 5.9 24 150-173 117-140 (413)
481 PRK06305 DNA polymerase III su 77.4 3.4 7.3E-05 51.9 5.7 57 118-176 9-66 (451)
482 PRK14958 DNA polymerase III su 77.3 3.2 6.9E-05 52.8 5.6 56 117-176 7-65 (509)
483 PRK06620 hypothetical protein; 77.3 2.9 6.3E-05 47.0 4.7 20 150-169 45-64 (214)
484 PRK05439 pantothenate kinase; 77.2 3.7 8E-05 48.7 5.7 43 131-173 58-110 (311)
485 KOG1970 Checkpoint RAD17-RFC c 77.2 2.9 6.3E-05 51.8 4.8 61 113-173 69-134 (634)
486 PRK05563 DNA polymerase III su 77.1 3 6.6E-05 53.7 5.4 53 118-173 8-62 (559)
487 TIGR02640 gas_vesic_GvpN gas v 77.1 3.1 6.6E-05 48.4 5.0 41 130-173 5-45 (262)
488 PRK10246 exonuclease subunit S 77.1 3E+02 0.0066 38.7 25.0 177 874-1050 667-864 (1047)
489 PRK11176 lipid transporter ATP 77.1 1.5 3.2E-05 57.2 2.6 27 147-173 367-393 (582)
490 PLN02318 phosphoribulokinase/u 77.0 2.6 5.7E-05 53.4 4.6 41 133-173 48-89 (656)
491 cd03223 ABCD_peroxisomal_ALDP 77.0 1.8 4E-05 46.4 2.9 24 147-170 25-48 (166)
492 PRK05428 HPr kinase/phosphoryl 77.0 1.7 3.7E-05 51.0 2.8 21 151-171 148-168 (308)
493 PRK11124 artP arginine transpo 76.8 1.8 3.9E-05 49.5 2.9 24 147-170 26-49 (242)
494 PF07106 TBPIP: Tat binding pr 76.8 25 0.00053 38.0 11.5 78 973-1050 72-159 (169)
495 cd03224 ABC_TM1139_LivF_branch 76.8 1.8 3.9E-05 48.7 2.9 24 147-170 24-47 (222)
496 COG1126 GlnQ ABC-type polar am 76.8 1.9 4E-05 47.7 2.8 23 147-169 26-48 (240)
497 PF09738 DUF2051: Double stran 76.8 1.3E+02 0.0029 35.6 18.1 133 902-1047 2-172 (302)
498 PF14532 Sigma54_activ_2: Sigm 76.7 1.1 2.4E-05 46.4 1.1 26 147-172 19-44 (138)
499 cd03256 ABC_PhnC_transporter A 76.7 1.8 3.9E-05 49.4 2.9 24 147-170 25-48 (241)
500 KOG3354 Gluconate kinase [Carb 76.7 2 4.4E-05 44.7 2.8 23 151-173 14-36 (191)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-236 Score=2187.48 Aligned_cols=1360 Identities=35% Similarity=0.545 Sum_probs=1048.4
Q ss_pred CccccccCcEEEEeCCCCceEEEEEEEec--CCeEEEE--eCCCcEEEEeCCCccC--CCCCCCCCCCCcccCCCCCCch
Q 000434 3 APVNIIVGSHVWVEHPELAWVDGEVFKIS--AEEVHVH--TTNGQTVITNISKVFP--KDTEAPPGGVDDMTKLSYLHEP 76 (1513)
Q Consensus 3 ~~~~~~~g~~vw~~~~~~~w~~~~v~~~~--~~~~~v~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~L~~l~e~ 76 (1513)
+..++.+|..||+||.+.+|+.|.|.+.+ ++.++.. ..+|+...++...+-. .++| ..+++||||.|+|||||
T Consensus 2 ~~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P-~~~~vdDLt~LSyLNEp 80 (1463)
T COG5022 2 STTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLP-KFDGVDDLTELSYLNEP 80 (1463)
T ss_pred CccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCc-cccCchhhhhhhccCcH
Confidence 34578999999999999999999999753 3333222 2355444444432221 1111 35899999999999999
Q ss_pred hHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecC
Q 000434 77 GVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSG 156 (1513)
Q Consensus 77 ~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisG 156 (1513)
+|||||++||.+++||||+|.+|||||||+.|| ||++++|+.|++++..+++|||||||++||+.|...++||||||||
T Consensus 81 sVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISG 159 (1463)
T COG5022 81 AVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISG 159 (1463)
T ss_pred HHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEEEcCCCCcccceeee
Q 000434 157 ESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRT 236 (1513)
Q Consensus 157 eSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~ 236 (1513)
||||||||+||+||+|||++++.++....+||++||++||||||||||||+|||||||||||++|.||.+|.|+||+|+|
T Consensus 160 ESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~ 239 (1463)
T COG5022 160 ESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIET 239 (1463)
T ss_pred CCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhh
Confidence 99999999999999999999987766667899999999999999999999999999999999999999999999999999
Q ss_pred ecccCccccccCCCCccceeehhcccC-ChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcCCCHHH
Q 000434 237 YLLERSRVCQISDPERNYHCFYLLCAA-PPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEE 315 (1513)
Q Consensus 237 ylLEksRvv~~~~~ErnfHiFYql~~~-~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~ 315 (1513)
|||||||||+|+.+|||||||||||++ ++..++.+++..|.+|.||++|+|..++|+||+++|..|++||++|||+.++
T Consensus 240 YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~ee 319 (1463)
T COG5022 240 YLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEE 319 (1463)
T ss_pred hhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHH
Confidence 999999999999999999999999995 5555566677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCCceEeccCCHHHHHH
Q 000434 316 QDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVG 395 (1513)
Q Consensus 316 ~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~ 395 (1513)
|..||+|||||||||||+|..+.+ +++.+.+. ..++.+|.|||||++.|.+||++|.|.+++|.|.+|++..||..
T Consensus 320 q~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ 395 (1463)
T COG5022 320 QDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395 (1463)
T ss_pred HHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHH
Confidence 999999999999999999998654 44444443 36999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHHHhHhHHhHHhhhHHHhh
Q 000434 396 SRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYT 475 (1513)
Q Consensus 396 ~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~~f~~~~f~~eq~~y~ 475 (1513)
+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.
T Consensus 396 irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~ 475 (1463)
T COG5022 396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYV 475 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877778999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccccChHHHHHHhhc-CcccccccchhhccCCCCchHHHHHHHHHHhc--CCCCcccCCCCCCCeEEEccCc
Q 000434 476 KEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSRTSFTISHYAG 552 (1513)
Q Consensus 476 ~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~~~~~~~~~~~F~i~Hyag 552 (1513)
+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|+|++|.+||++.+. +++.|.+||+....|+|+||||
T Consensus 476 kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAg 555 (1463)
T COG5022 476 KEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAG 555 (1463)
T ss_pred HhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecc
Confidence 99999999999999999999997 35699999999999999999999999999986 5688999999999999999999
Q ss_pred ceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHHHHHcccCCeeEeecC
Q 000434 553 EVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVK 632 (1513)
Q Consensus 553 ~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIk 632 (1513)
+|+|+++||++||||++++++++|+.+|+|+||+.||+......+ .++++|+|++||.||.+||++|++|+||||||||
T Consensus 556 DVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~-K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIk 634 (1463)
T COG5022 556 DVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES-KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIK 634 (1463)
T ss_pred cceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc-cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeC
Confidence 999999999999999999999999999999999999995443333 3688999999999999999999999999999999
Q ss_pred CCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCC-----CCCchHHHHHHHHHHcCC
Q 000434 633 PNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-----GNYDDKVACEKILDKMGL 707 (1513)
Q Consensus 633 PN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-----~~~~~~~~~~~il~~~~~ 707 (1513)
||..|+|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|.... ...+.+.+|..||..+.+
T Consensus 635 PN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~i 714 (1463)
T COG5022 635 PNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVI 714 (1463)
T ss_pred CCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999997432 124679999999999877
Q ss_pred C--CceeccchhhhchhhhHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000434 708 K--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREA 785 (1513)
Q Consensus 708 ~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~~ 785 (1513)
+ .||+|+||||||+|+++.||.+|...++.+++.||++|||++.|++|.+..+.+..+|...+|+..|+++..--...
T Consensus 715 d~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~ 794 (1463)
T COG5022 715 DSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWR 794 (1463)
T ss_pred ChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHH
Confidence 5 59999999999999999999999999999999999999999999999999999999999999999998877666667
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 786 AALKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCG 864 (1513)
Q Consensus 786 AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQ-s~~Rg~laRr~~~~l~~~~aAv~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~ 864 (1513)
+++++|+.||....|+.|......++.+| ..+|....+...+.....++++.+|+.||.+..+.+|..+.+.++.+|+.
T Consensus 795 ~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~ 874 (1463)
T COG5022 795 LFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA 874 (1463)
T ss_pred hHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 89999999999999999999999999999 66666666665666677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 865 WRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRI 944 (1513)
Q Consensus 865 ~R~~~arrel~~Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~eeLe~~lee~~~~l 944 (1513)
+|...|++++..++.+..++..+......++.++.++...++.......+.. .+....|++.+...+
T Consensus 875 ~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k---~e~~a~lk~~l~~~d---------- 941 (1463)
T COG5022 875 QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFK---TELIARLKKLLNNID---------- 941 (1463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHH---HHHHHHHHHHhhccc----------
Confidence 9999999999999999999999999999999998888776654211111111 111222221111100
Q ss_pred HHHHHHHHHHHHhCCCccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhh---HHHHHHHHHH
Q 000434 945 LKEQEAARKAIEEAPPIVKETPVIV-HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN---TELVKKLEDT 1020 (1513)
Q Consensus 945 ~~e~e~l~~~~ee~~~~~~e~~~l~-~~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~---~~l~~~l~~l 1020 (1513)
+++...++ .....+..+..+..++++.....+.-+...+....+..... ....+.+...
T Consensus 942 -----------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~ 1004 (1463)
T COG5022 942 -----------------LEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAEL 1004 (1463)
T ss_pred -----------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000000 00012233333333333333222222222221111111111 1111111111
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhcCCCccccccCCcccccccccccccCCCCCCcccc---cccc-
Q 000434 1021 EEKVGQLQESMQRLEEK---LCNSESENQVIRQQALAMSPTGKSLSARPKTLVIQDVTLAVTSAREPESEEK---PQKS- 1093 (1513)
Q Consensus 1021 e~ei~~Lq~e~~~Lee~---i~~Le~en~~Lkq~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 1093 (1513)
..+...++.....+++. +..+....+.........+ .+.+ .... ...........+.+.. ..+.
T Consensus 1005 ~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~~~~~~----~~~~-~~~~----~~~~~~~~~~l~~~~~~l~~~r~~ 1075 (1463)
T COG5022 1005 SKQYGALQESTKQLKELPVEVAELQSASKIISSESTELS----ILKP-LQKL----KGLLLLENNQLQARYKALKLRREN 1075 (1463)
T ss_pred Hhhhhhhhhhhhhcccccchhhhhhhhhhhhccchhhhh----ccCc-ccch----hhhhhHHHHHhhhhHhhhhhcCcc
Confidence 11111222222222211 2222222222111000000 0000 0000 0000000000000000 0000
Q ss_pred -chHH----hhhhhHHHHHhhh-cCCCCcCC-ccchHHH-HHHHHhcccc-cchhhhHHHHHHHHHHHHHhhc---cCCC
Q 000434 1094 -LNEK----QQENQDLLIKCVS-QNLGFSRS-KPVAASV-IYKCLLHWRS-FEVERTTVFDRIIQTIASAIEV---QDNN 1161 (1513)
Q Consensus 1094 -~~~~----~~~~~~~l~~~~~-~~~~~~~~-kp~pA~i-l~~cl~~~~~-~~~~~~~ll~~i~~~I~~~v~~---~~d~ 1161 (1513)
+.+. ..+....+.+.+. .++...+. -+-||.. -+.....|+. ...+...++...+..++.+... .+-.
T Consensus 1076 ~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~ 1155 (1463)
T COG5022 1076 SLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLE 1155 (1463)
T ss_pred cchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhcc
Confidence 1110 1111112333332 22222111 1124443 3333335554 3345555666656665555442 2333
Q ss_pred cccchhhhhHHHHHHHHHHhhhhccCCcCCccccccccccccccccccccCCCCCCCcccccCCcccccchhhhhhhhch
Q 000434 1162 DVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDLRQVEAKYP 1241 (1513)
Q Consensus 1162 ~~layWLsN~~~Ll~~Lq~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv~~~~~ 1241 (1513)
-...||.+|...+++.--- ....+.+... .++ +++.+.+ ..--
T Consensus 1156 ~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~----------------~d~~~~~------------s~s~ 1198 (1463)
T COG5022 1156 LDGLFWEANLEALPSPPPF-------AALSEKRLYQ--SAL----------------YDEKSKL------------SSSE 1198 (1463)
T ss_pred ccccccccccccCCCCCch-------hhcchhhhhH--hhh----------------hcccccc------------cHHH
Confidence 4567999998876531000 0000000000 000 0000000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-cc-CCCCcccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHHHH
Q 000434 1242 ALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLC-IQ-APRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTM 1319 (1513)
Q Consensus 1242 ~~~fkqqL~~~~~~iy~~l~~~i~~~L~~~L~~~-i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~L 1319 (1513)
+...+..+..+..++|..|.... ++.+++... ++ ......+++ +.++..+..+...+.+.++.+++.+.+.+
T Consensus 1199 v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~n~i~~~~ 1272 (1463)
T COG5022 1199 VNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGF----NNLNKKFDTPASMSNEKLLSLLNSIDNLL 1272 (1463)
T ss_pred HHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccc----cchhhcccCcccCcHHHHHHHHHHHHHHH
Confidence 23345678888888888887654 233332211 00 000001000 00112233345567889999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcccCcccccchhHhhhchhHHHHHHhhcccccccchHHHhhhHHHHHHHH
Q 000434 1320 KVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFL 1399 (1513)
Q Consensus 1320 ~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lL 1399 (1513)
+.+.+.+.+....++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+++||+..+ ...+..+|++++||+..+
T Consensus 1273 ~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~ 1349 (1463)
T COG5022 1273 SSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELEELIQAVKVL 1349 (1463)
T ss_pred HHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 566778999999999999
Q ss_pred hccCCCccCHHHHHHhhCCCCCHHHHHHHHhcCcCCCCCCccCCHHHHHHHHhhhhc
Q 000434 1400 VINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTE 1456 (1513)
Q Consensus 1400 q~~kk~~~~~~~i~~~~c~~Ls~~Ql~kIL~~Y~~d~~e~~~vs~~~i~~v~~~~~~ 1456 (1513)
++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++..+|.+....
T Consensus 1350 ~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1350 QLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLIK 1404 (1463)
T ss_pred hhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhhH
Confidence 9998888888777 4999999999999999999999998 49999999777555543
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1e-203 Score=1917.80 Aligned_cols=769 Identities=36% Similarity=0.577 Sum_probs=716.3
Q ss_pred ccccccCcEEEE-------eCCCCceEEEEEE-EecCCeEEEEe---CCCcEEEEeCCCccCCCCCCCCCCCCcccCCCC
Q 000434 4 PVNIIVGSHVWV-------EHPELAWVDGEVF-KISAEEVHVHT---TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSY 72 (1513)
Q Consensus 4 ~~~~~~g~~vw~-------~~~~~~w~~~~v~-~~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 72 (1513)
+.++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+++.++.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 456779999998 6789999999999 78888888874 578999999999999998776789999999999
Q ss_pred CCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhcc-CcCCCCchHHHHHHHHHHHHHhcCCCeE
Q 000434 73 LHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMINEGKSNS 151 (1513)
Q Consensus 73 l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHifavA~~Ay~~m~~~~~~Qs 151 (1513)
||||+|||||+.||.++.||||+|++|||||||+++| +|++++++.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999997 9999999999985 5688999999999999999999999999
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEEEcCCCCccc
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISG 231 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~g 231 (1513)
|||||||||||||+||+||+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999986532 2357999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcC
Q 000434 232 AAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVG 310 (1513)
Q Consensus 232 a~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg 310 (1513)
|+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|..++|+||+++|.+|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCeEEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCCceEecc
Q 000434 311 ISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRT 387 (1513)
Q Consensus 311 ~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~~~ 387 (1513)
|+++++.+||+|||||||||||+|.+... .|++.+.+. +...++.||+|||||+++|.++||+|++.++++.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 345555443 34579999999999999999999999999999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHHHhHhHHhHH
Q 000434 388 LDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVF 467 (1513)
Q Consensus 388 l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~~f~~~~f 467 (1513)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766788999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccCCC-CCCCeE
Q 000434 468 KMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-SRTSFT 546 (1513)
Q Consensus 468 ~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~-~~~~F~ 546 (1513)
+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 467999
Q ss_pred EEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHHHHHcccCCe
Q 000434 547 ISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPH 626 (1513)
Q Consensus 547 i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h 626 (1513)
|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998754433344466899999999999999999999999
Q ss_pred eEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCC-CCchHHHHHHHHHHc
Q 000434 627 YIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACEKILDKM 705 (1513)
Q Consensus 627 firCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~ 705 (1513)
||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+..... ..|+++.|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999998865432 358899999999998
Q ss_pred CC--CCceeccchhhhchhhhHHHHHHHHHHhh---hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKL 777 (1513)
Q Consensus 706 ~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~---~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~ 777 (1513)
++ ++|++|+||||||++++..||..|.+++. .++..||++||+|++|++|++++.+++.||+++|||++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999999999998887764 57888999999999999998888888888888888887754
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=3.5e-189 Score=1766.92 Aligned_cols=673 Identities=87% Similarity=1.337 Sum_probs=647.9
Q ss_pred CCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000434 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1513)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 141 (1513)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+++|+||++++|..|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEE
Q 000434 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1513)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l 221 (1513)
+|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EEcCCCCcccceeeeecccCccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000434 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1513)
Q Consensus 222 ~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1513)
+||.+|.|+||+|.+|||||||||+|++||||||||||||++++++++.|+|.++.+|+||++++|..++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCC
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 381 (1513)
++.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||+||||++++|.++|+++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666665556789999999999999999999999999999
Q ss_pred ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHHHhH
Q 000434 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 461 (1513)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~~ 461 (1513)
+.+++++++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred hHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccCCCC
Q 000434 462 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS 541 (1513)
Q Consensus 462 f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~ 541 (1513)
||++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHHHHHc
Q 000434 542 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1513)
Q Consensus 542 ~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~ 621 (1513)
+..|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665555556778999999999999999999
Q ss_pred ccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCCCCchHHHHHHH
Q 000434 622 STEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKI 701 (1513)
Q Consensus 622 ~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~i 701 (1513)
+|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......+++..|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766666889999999
Q ss_pred HHHcCCCCceeccchhhhchhhhHHHHHHHHHH
Q 000434 702 LDKMGLKGYQIGKTKVFLRAGQMAELDARRAEV 734 (1513)
Q Consensus 702 l~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~ 734 (1513)
|+.++.++|++|+||||||++++..||..|.+.
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999875
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-184 Score=1805.52 Aligned_cols=1027 Identities=38% Similarity=0.596 Sum_probs=829.3
Q ss_pred cccccCcEEEEeCCCCceEEEEEEEecCCeEEEEeCCCcEEE-EeCCCccCCCCCCCCCCCCcccCCCCCCchhHHHHHH
Q 000434 5 VNIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVI-TNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLA 83 (1513)
Q Consensus 5 ~~~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~ 83 (1513)
..+..-.+|||||++++|+.|.|.+..|+.++|.+.+|...+ |+.++++|+||| .++.++||+.|++||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456677899999999999999999987777999998877766 899999999876 467999999999999999999999
Q ss_pred HHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000434 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKT 163 (1513)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKT 163 (1513)
.||..+.||||+|..||+||||+++| ||+++++++|+|+...++||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---CccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEEEcCCCCcccceeeeeccc
Q 000434 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLE 240 (1513)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~ylLE 240 (1513)
|+||.|++|||++++++... +.+++++|+++||||||||||+|++|||||||||||.|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 157899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccceeehhccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhhhhhcCCCHHHHHH
Q 000434 241 RSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQDA 318 (1513)
Q Consensus 241 ksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1513)
||||++|+++||||||||||++ .++..+..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999975 899999999887 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCCceEeccCCHHHHHHhHH
Q 000434 319 IFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSRD 398 (1513)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1513)
||+|+||||||||+.|......+.+.+.+. .....+|.||||+...|.+++++..+.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 999999999999999987654455444433 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHHHhHhHHhHHhhhHHHhhhcC
Q 000434 399 ALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEE 478 (1513)
Q Consensus 399 alak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~~f~~~~f~~eq~~y~~Eg 478 (1513)
+|||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHh-cCCCCcccCC--CCCCCeEEEccCcce
Q 000434 479 INWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK--LSRTSFTISHYAGEV 554 (1513)
Q Consensus 479 i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~~~--~~~~~F~i~Hyag~V 554 (1513)
|.|.+|+| .|-|||||||++ |.||+++|||||++|++||.+|+.||...| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 589999999995 569999999999999999999999999999 8999999997 456799999999999
Q ss_pred eeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCc-----------cccCCCCCccchHHHHHHHHHHHHHHccc
Q 000434 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNST 623 (1513)
Q Consensus 555 ~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t 623 (1513)
.|+++||++||+|++++.++++|..|++++|+.||.+... ..+|++.|.||+..+|.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987211 13345578899999999999999999999
Q ss_pred CCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCC-CCCchHHHHHHHH
Q 000434 624 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKIL 702 (1513)
Q Consensus 624 ~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il 702 (1513)
+|||||||.||+.|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.+.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555433 3457789999999
Q ss_pred HHcCC--CCceeccchhhhchhhhHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 000434 703 DKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIAL---RKAAIVLQSYWRGILACKL 777 (1513)
Q Consensus 703 ~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~---r~a~i~IQ~~~Rg~laRk~ 777 (1513)
..+.. .-|++|.||||||+|+++.||..|...+....+.+|+.+|||++|+.|.+. ..|+.+||+.+|.|+..+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 98755 469999999999999999999999999999999999999999999988875 4688999999999999999
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 778 YEQLRREAAA-LKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFR----FRKQTKAAIIIEAYLRRHTACSYYK 852 (1513)
Q Consensus 778 ~~~~r~~~AA-~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr~~~----~l~~~~aAv~IQ~~~R~~~~r~~~~ 852 (1513)
|.|++....+ -.|+..-+.-..++....+..---.++ +....|++++ .+..+...+..|-..+.-..+....
T Consensus 818 w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~---~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee 894 (1930)
T KOG0161|consen 818 WPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQ---KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEE 894 (1930)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888854221 123433333333332222221111111 1111122221 1222333333332222222221111
Q ss_pred H---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 853 S---LKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDA 929 (1513)
Q Consensus 853 ~---~~~a~~~iQ~~~R~~~arrel~~Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k~~e~~~L~~~ 929 (1513)
. ++..-..++..+ +..-.++..+++....+.....+++.++.++...+++.+..+.+++.++.....++++-
T Consensus 895 ~~~~~~~~k~~le~~l-----~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 895 LLERLRAEKQELEKEL-----KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111110 11111344445556666777777777888887777777777777776665433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 000434 930 LQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARK-------- 1001 (1513)
Q Consensus 930 ~eeLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le~-------- 1001 (1513)
.+++.. +++...++.+++..++..+.++... ++..++++..+.+.+.+++..+++++..++..++
T Consensus 970 ~~e~~~-~~e~~~kL~kekk~lEe~~~~l~~~------l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~ 1042 (1930)
T KOG0161|consen 970 EEEINS-LDENISKLSKEKKELEERIRELQDD------LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA 1042 (1930)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 3444445555555555444443211 2223334444444444444444443333332222
Q ss_pred ---------------------------HhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 000434 1002 ---------------------------ACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1002 ---------------------------~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
++...+.+...+..+++++...+.+++..+.+|+.++.+++++.+..+....
T Consensus 1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223334455566666777777777777777777777777777666544
No 5
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.8e-185 Score=1589.84 Aligned_cols=728 Identities=40% Similarity=0.701 Sum_probs=676.6
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000434 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1513)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 140 (1513)
..|++|++-|+.++|++++.||+.||.++.||||+|+|||+||||+.++ ||+++.|++|+|..+.+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 4799999999999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC-CCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~-~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865442 2356788999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTE 297 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1513)
.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.+...|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999995 79999999998 88999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhcee
Q 000434 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1513)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~ 377 (1513)
+|..++.||.++||+++|+.++|+|+|||||||||+|.+++ |++.+.+. ..+..+|+||++..+.|+++||.|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 44444433 47999999999999999999999999
Q ss_pred eeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCC-----CCCeEEEEecccccccCCCCCHHHHHhh
Q 000434 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-----NSRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1513)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~-----~~~~~IgiLDi~GFE~f~~NsfeQlciN 452 (1513)
.+++|.+.+++++.||..+||||||++|+|||+|||.+||++|.... .....||+|||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999996431 2358999999999999999999999999
Q ss_pred hhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCC-CchHHHHHHHHHHhcC
Q 000434 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKS 531 (1513)
Q Consensus 453 yanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~-~~d~~~~~kl~~~~~~ 531 (1513)
|+||||||.|++-++|.|||||++|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCcccCC-------CCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccC-CCCCc
Q 000434 532 NKRFIKPK-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK-SSKFS 603 (1513)
Q Consensus 532 ~~~~~~~~-------~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~-~~~~~ 603 (1513)
|++|..-+ +.-.+|.|.||||+|+|++.||++||+|.|..|+-.+|..|++|++++||+........ ..+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 23368999999999999999999999999999999999999999999999975433222 23668
Q ss_pred cchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhc
Q 000434 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1513)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 683 (1513)
|+|++||.|+..||+.|.+.+|+||||||||+.|.|+.||...|.+|.+|+|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC--CCchHHHHHHHHHHcCC-CCceeccchhhhchhh-hHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 000434 684 APDVLDG--NYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1513)
Q Consensus 684 ~~~~~~~--~~~~~~~~~~il~~~~~-~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r 759 (1513)
++..++. ..++++.|..+++..+. .++.+|+||||+|.+. +-.||..|.+++...++.||+.||||++|.+|++++
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876542 24578999999999987 5899999999999875 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHH
Q 000434 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 805 (1513)
Q Consensus 760 ~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~Rr~y~~ 805 (1513)
++++.|+ |||.+.. ..++..||+.+|+++.++.|.+
T Consensus 720 a~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCC
Confidence 9999888 7874432 2466789999999999998865
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=9.3e-185 Score=1737.72 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=625.7
Q ss_pred CCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000434 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1513)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1513)
|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC--CCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEE
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~ 220 (1513)
|.++++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224689999999999999999999999999999999999
Q ss_pred EEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000434 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1513)
Q Consensus 221 l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1513)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeee
Q 000434 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1513)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~ 379 (1513)
.+|+.||+.|||+++++.+||+|||||||||||+|.+.++ +.+.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322221 234799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccC---CCCCeEEEEecccccccCCCCCHHHHHhhhhhH
Q 000434 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1513)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE 456 (1513)
++|.+++++++++|.++||||||+||++||+|||.+||.+|.++ .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhc--CCCC
Q 000434 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKR 534 (1513)
Q Consensus 457 ~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~ 534 (1513)
+|||+||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.++ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred cccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccc-----------------c
Q 000434 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------S 597 (1513)
Q Consensus 535 ~~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1513)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+ .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHH
Q 000434 598 KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1513)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1513)
+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 11256899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
.||++|++.......|+++.|+.||+.+.. +.|++|+||||||+++++.||..|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456889999999999874 589999999999999999999865
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.9e-184 Score=1726.59 Aligned_cols=661 Identities=46% Similarity=0.773 Sum_probs=625.3
Q ss_pred CCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000434 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1513)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1513)
|||||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|+++.++.|+++..+++|||||+||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~ 222 (1513)
|.++++||||||||||||||||++|++|+|||.+++.. +.|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000434 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1513)
Q Consensus 223 f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1513)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeee
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~ 379 (1513)
++.||+.|||+++++.+||+|||||||||||+|.+.+. .+.+.+.+ ...++.||+||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 34555554 35799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEEEecccccccCCCCCHHHHHhhhhhHHH
Q 000434 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1513)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~L 458 (1513)
+++.+++|+++++|.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccC
Q 000434 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1513)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~ 538 (1513)
||+||+|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|+|++|++||++.+++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccc-cCCCCCccchHHHHHHHHHH
Q 000434 539 KL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1513)
Q Consensus 539 ~~-~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1513)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ....+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754221 12335689999999999999
Q ss_pred HHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCC--CCch
Q 000434 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDD 694 (1513)
Q Consensus 617 ~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1513)
|++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3467
Q ss_pred HHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 695 KVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 695 ~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
+..|+.|++.+.+ ++|++|+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999865
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.2e-184 Score=1732.23 Aligned_cols=667 Identities=46% Similarity=0.784 Sum_probs=626.2
Q ss_pred CCCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000434 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1513)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1513)
+.+++|||+.|++|||++||++|+.||.++.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC------CCCccHHHHHhhhchHHHhhcCccccCCCCCC
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~i~~~il~snpiLEaFGNAkT~~N~NSS 213 (1513)
|++|.+.++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred CcccEEEEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCC-CCCccccCCCccccC
Q 000434 214 RFGKFVELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALD 291 (1513)
Q Consensus 214 RfGk~~~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~ 291 (1513)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78999999999876 99999999876 578
Q ss_pred CCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHH
Q 000434 292 GVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDA 371 (1513)
Q Consensus 292 ~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~ 371 (1513)
++||+++|.+++.||+.|||+++++.+||+|||||||||||+|.+.++.+.+.+.+. ..+..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987644555555543 47999999999999999999
Q ss_pred HhhceeeeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHh
Q 000434 372 LINRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1513)
Q Consensus 372 l~~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1513)
||++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred hhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccc-cChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhc
Q 000434 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK 530 (1513)
Q Consensus 452 NyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~ 530 (1513)
|||||+|||+||+|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 49999999999999999999999999999999999999999999
Q ss_pred CCCCc--ccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccc----------cC
Q 000434 531 SNKRF--IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES----------SK 598 (1513)
Q Consensus 531 ~~~~~--~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~ 598 (1513)
+|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+ .+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99988 3455567899999999999999999999999999999999999999999999998642211 11
Q ss_pred CCCCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHH
Q 000434 599 SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLH 678 (1513)
Q Consensus 599 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 678 (1513)
.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 22458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCC-CCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 679 RFGVLAPDVL-DGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
||++|++... ....|.++.|+.||+.+++ ++|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 2345789999999999876 489999999999999999999865
No 9
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.5e-183 Score=1682.41 Aligned_cols=752 Identities=64% Similarity=1.011 Sum_probs=722.4
Q ss_pred CCCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000434 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1513)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1513)
|+.|+|||+.|+|||||+||+||+.||..+.||||+|.+|||||||+++|++|++++|..|+ ...+.+.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
|+.|..++.||+||||||||||||+++|++|+||++++++ ..+.+||++|++|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1513)
+|+||.+|+|+||+|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+.+|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeee
Q 000434 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1513)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~ 379 (1513)
..++.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|.|||++.+.|..+|+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776555555443 789999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccc-CCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHH
Q 000434 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1513)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~L 458 (1513)
+++.|+++++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999987 445689999999999999999999999999999999
Q ss_pred HhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccC
Q 000434 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1513)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~ 538 (1513)
||+||+|||+.||++|.+|||+|+.|+|.||++|+|+|++ |.|+++||||+|++|.++|++|..||+..+.+|+.|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHHH
Q 000434 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1513)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 618 (1513)
+++++.|+|.||||+|+|+++|||+||||.+++++.+++..|+++|+..+|++....+.+.++++||+++|+.+|..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666665566889999999999999999
Q ss_pred HHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCCCCchHHHH
Q 000434 619 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVAC 698 (1513)
Q Consensus 619 ~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1513)
+|++|.||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHHHcCCCCceeccchhhhchhhhHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 699 EKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLY 778 (1513)
Q Consensus 699 ~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~ 778 (1513)
+.+|+.++.+.||+|+||||||+|+++.||.+|...+..+++.||+.+|+|+.|++|..+|++++.||+.+||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 000434 779 EQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1513)
Q Consensus 779 ~~~r~~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr 824 (1513)
..+ +..||+.||+.||+|..|++|...+.+++.+|+.+|++++|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334 678999999999999999999999999999999999999987
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.1e-182 Score=1708.92 Aligned_cols=657 Identities=48% Similarity=0.827 Sum_probs=615.0
Q ss_pred CCCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000434 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1513)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1513)
..+++|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+|||||+||++|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999998 99999999998764 4699999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
|+.|..+++||||||||||||||||++|++|+|||.++++ ..|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1513)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceee
Q 000434 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1513)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~ 378 (1513)
|..|+.||+.|||+++++..||+|||||||||||+|.+.++.+.+.+.+ ...+..||+||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 9999999999999999999999999999999999998754433333332 3479999999999999999999999999
Q ss_pred eCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCC-CCeEEEEecccccccCCCCCHHHHHhhhhhHH
Q 000434 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINFTNEK 457 (1513)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~ 457 (1513)
++++.+++++++++|.++||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 46799999999999999999999999999999
Q ss_pred HHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCccc
Q 000434 458 LQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK 537 (1513)
Q Consensus 458 Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~ 537 (1513)
|||+||++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCC-----Cc-c-----ccCCCCCccch
Q 000434 538 PKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE-E-----SSKSSKFSSIG 606 (1513)
Q Consensus 538 ~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~-~-----~~~~~~~~tv~ 606 (1513)
++ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. . +.+.++..||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 578999999999999999999999999999999999999999876 55421 10 0 11123568999
Q ss_pred HHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCC
Q 000434 607 SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPD 686 (1513)
Q Consensus 607 ~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~ 686 (1513)
++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 687 VLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 687 ~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
.... .|++..|+.||+.+++ ++|++|+||||||.++++.||..|
T Consensus 632 ~~~~-~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIAS-QDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccCC-CCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 5443 5788999999999876 489999999999999999999865
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.1e-182 Score=1714.79 Aligned_cols=662 Identities=45% Similarity=0.776 Sum_probs=626.3
Q ss_pred CCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000434 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1513)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1513)
|||||+.|++|||++|||+|+.||.+|.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~ 222 (1513)
|.++++||||||||||||||||++|++|+||+.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986533 2356999999999999999999999999999999999999
Q ss_pred EcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000434 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1513)
Q Consensus 223 f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1513)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCC
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 381 (1513)
++.||+.|||+++++.+||+|||||||||||+|...++ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2334443 3579999999999999999999999999998
Q ss_pred ----ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEEEecccccccCCCCCHHHHHhhhhhH
Q 000434 382 ----EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1513)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE 456 (1513)
|.+++|+++++|.++||+|||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhccCC-CCchHHHHHHHHHHhcCCCC
Q 000434 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKR 534 (1513)
Q Consensus 457 ~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~-~~~d~~~~~kl~~~~~~~~~ 534 (1513)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred cccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHH
Q 000434 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1513)
Q Consensus 535 ~~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1513)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 888888889999999999999999999999999999999999999999999999986433322 2256899999999999
Q ss_pred HHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCC-CCCCc
Q 000434 615 SLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL-DGNYD 693 (1513)
Q Consensus 615 ~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1513)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23458
Q ss_pred hHHHHHHHHHHcCC--CCceeccchhhhchh-hhHHHHHHH
Q 000434 694 DKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1513)
Q Consensus 694 ~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 731 (1513)
+++.|+.||+.+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999876 489999999999997 689999765
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-179 Score=1544.13 Aligned_cols=789 Identities=40% Similarity=0.677 Sum_probs=710.9
Q ss_pred ccCcEEEEeCCCCceEEEEEEEecCCeEEEEe--CCCcEEEEeCCCccCCCCCCCCCCCCcccCCCCCCchhHHHHHHHH
Q 000434 8 IVGSHVWVEHPELAWVDGEVFKISAEEVHVHT--TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAAR 85 (1513)
Q Consensus 8 ~~g~~vw~~~~~~~w~~~~v~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R 85 (1513)
.-|..||++|+.++|+.|+|+++..+.+++.. ..|.+++.-.+++++... .++..+||-|.|-||||+++|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~ee-D~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEE-DSPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhcccccc-ccccccccccceeeccHHHHhhhhhhh
Confidence 45889999999999999999999988888865 356778777888888754 356889999999999999999999999
Q ss_pred hccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000434 86 YELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1513)
Q Consensus 86 y~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1513)
|.+|.||||+.+||||||||..++.+|+++.+..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEEEcCCCCcccceeeeecccCcccc
Q 000434 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1513)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~ylLEksRvv 245 (1513)
+|.+++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|++|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986543 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCc--------------------------cccCCCCcHHH
Q 000434 246 QISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC--------------------------YALDGVDDTEE 298 (1513)
Q Consensus 246 ~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1513)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8999999999999999999985411 11223789999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHHHhhce
Q 000434 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1513)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~ 376 (1513)
|..+..||..+|++++|...||+++|||||||||+|++..+ ..+|.+.+. +...|..+|+|||+|.++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~-seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNG-SEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccC-chhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 356777653 566899999999999999999999999
Q ss_pred eeeC-----CceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHh
Q 000434 377 MVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1513)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1513)
|.+. |..|.+||.+.+|..+||||||++|++||||||.+||+++... .+..|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 8753 4578999999999999999999999999999999999999653 468899999999999999999999999
Q ss_pred hhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcC
Q 000434 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1513)
Q Consensus 452 NyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~ 531 (1513)
||+|||||+|||+.+++.||+.|++||++...|+|.|||+||+|||.|..|||+|||||.++|+.+++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCC----------CCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccC--C
Q 000434 532 NKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK--S 599 (1513)
Q Consensus 532 ~~~~~~~~~~----------~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~ 599 (1513)
|-+...|+.+ ...|.|+||||.|.|+++.|+|||.|.|...+..|+..|+++|+.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888877643 247999999999999999999999999999999999999999999999986443322 1
Q ss_pred C--CCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHH
Q 000434 600 S--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1513)
Q Consensus 600 ~--~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1513)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|++||...++.||.|+|+...++++..|||+|..|.+.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCchHHHHHHHHHHcCCC--CceeccchhhhchhhhHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Q 000434 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEF 755 (1513)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~ 755 (1513)
.-|+-.+|+.+.. .|++..|+.+..++|++ +|+||.||||||+|.++..+++........+..|++ +..|+.|.+|
T Consensus 715 amYkk~lPpkLar-LdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLAR-LDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhhc-CChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 9999888876543 58999999999999985 899999999999999999999877766666666654 6789999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHhhhhHHHH
Q 000434 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQL 813 (1513)
Q Consensus 756 ~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~I 813 (1513)
++...++..+-..- .+..| +..+++++|+..|||++|+++........++
T Consensus 793 kk~q~~a~sVIKLk----NkI~y----Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLK----NKIIY----RAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHhhhhhhheeehh----hHHHH----HHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 87766654432211 11112 3357789999999999999987655443333
No 13
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=9.3e-182 Score=1703.69 Aligned_cols=661 Identities=41% Similarity=0.728 Sum_probs=617.6
Q ss_pred CCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000434 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1513)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 141 (1513)
+|||||+.|++|||++|||+|+.||.+|.||||+|+||||||||+.+| +|+++.++.|++...+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEE
Q 000434 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1513)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l 221 (1513)
.|..+++||||||||||||||||++|++|+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 24699999999999999999999999999999999999
Q ss_pred EEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000434 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYL 300 (1513)
Q Consensus 222 ~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 300 (1513)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999899999999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceee
Q 000434 301 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1513)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~ 378 (1513)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...+..||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987532 22333433 3479999999999999999999999999
Q ss_pred eCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHH
Q 000434 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1513)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~L 458 (1513)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred HhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccC
Q 000434 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1513)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~ 538 (1513)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|+|++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCcc---------c--cCCCCCccchH
Q 000434 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE---------S--SKSSKFSSIGS 607 (1513)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1513)
+.+.+.|+|+||||+|+|+++||++||+|.++++++++|.+|++++|+.||+..... + ++..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999753110 0 01124579999
Q ss_pred HHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCC
Q 000434 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1513)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1513)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
.....+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 43332334455788887765 479999999999999999999865
No 14
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.2e-181 Score=1703.96 Aligned_cols=664 Identities=41% Similarity=0.683 Sum_probs=622.1
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccC-cCCCCchHHHHHHHH
Q 000434 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVA 139 (1513)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifavA~~A 139 (1513)
..++|||+.|++|||++||++|+.||.+++||||+|+||||||||+++| +|++++++.|++.. .+++|||||+||++|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
|++|.++++||||||||||||||||++|+||+||+.+++.. ..+.+|+++|++|||||||||||||++||||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 99999999999999999999999999999999999997532 23467999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1513)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 788999999998888999999998887789999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHHHhhc
Q 000434 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1513)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~ 375 (1513)
|..|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999987432 34444443 3579999999999999999999999
Q ss_pred eeeeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCC---CCeEEEEecccccccCCC-CCHHHHHh
Q 000434 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN---SRTIIGVLDIYGFESFKL-NSFEQFCI 451 (1513)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~---~~~~IgiLDi~GFE~f~~-NsfeQlci 451 (1513)
++.++||.+++|+++++|.++||+|||+||++||+|||++||.+|.+... ...+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999986432 468999999999999999 99999999
Q ss_pred hhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcC
Q 000434 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1513)
Q Consensus 452 NyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~ 531 (1513)
||||||||++||+|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.+++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~ 480 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD 480 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCcccc---------CCCCC
Q 000434 532 NKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKF 602 (1513)
Q Consensus 532 ~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~ 602 (1513)
|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.... ++.+.
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (692)
T cd01385 481 NKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560 (692)
T ss_pred CCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccC
Confidence 999999988788999999999999999999999999999999999999999999999976432211 11234
Q ss_pred ccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhh
Q 000434 603 SSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1513)
Q Consensus 603 ~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1513)
+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++
T Consensus 561 ~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~ 640 (692)
T cd01385 561 PSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRI 640 (692)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchHHHHHHHHHHcCCC--CceeccchhhhchhhhHHHHHHHH
Q 000434 683 LAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1513)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~ 732 (1513)
|+|... ...++.|+.||+.++++ +|++|+||||||++++..||....
T Consensus 641 L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 641 LLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred hCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 998643 23467799999998874 899999999999999999998543
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.6e-181 Score=1707.89 Aligned_cols=664 Identities=43% Similarity=0.731 Sum_probs=619.3
Q ss_pred CCCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000434 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1513)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1513)
.+.++|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|++|+++++..|+++..+++|||||+||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
|++|.++++||||||||||||||||++|+||+|||.+++++ .+|+++|+++||||||||||||++||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999986542 57999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCC------------
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------ 286 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~------------ 286 (1513)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999752
Q ss_pred --------------ccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC-CCccccccccch
Q 000434 287 --------------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSR 351 (1513)
Q Consensus 287 --------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~ 351 (1513)
|..++++||+++|..|+.||++|||+++++..||+|||||||||||+|.+.+. .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 23467899999999999999999999999999999999999999999987432 23344432 245
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhceee-----eCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 000434 352 FHLNTTAELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNS 426 (1513)
Q Consensus 352 ~~l~~~a~lLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~ 426 (1513)
..+..||+||||++++|.++|++|++. ++++.+.+|++++||.++||+|||+||++||+|||.+||.++..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 689999999999999999999999988 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEEEecccccccCCCCCHHHHHhhhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCccccccc
Q 000434 427 RTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIAL 506 (1513)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~l 506 (1513)
..+||||||||||+|+.|||||||||||||||||+||++||+.||++|++|||+|++|+|.||++|||||+++|.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCCchHHHHHHHHHHhcCCCCcccCCCC----------CCCeEEEccCcceeeechhhhhhccccchHHHHHH
Q 000434 507 LDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVL 576 (1513)
Q Consensus 507 Ldee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~l 576 (1513)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999998877532 35799999999999999999999999999999999
Q ss_pred HhhcCchhhhccCCCCCccc---cC--CCCCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHh
Q 000434 577 LTASKCPFVSGLFPPLPEES---SK--SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQL 651 (1513)
Q Consensus 577 l~~S~~~~v~~lf~~~~~~~---~~--~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QL 651 (1513)
|++|++++|+.||+...... .+ ..++.||+++||.||+.||++|++|+||||||||||+.++|+.||..+|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999998643211 11 12567999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHH
Q 000434 652 RCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDA 729 (1513)
Q Consensus 652 r~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~ 729 (1513)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..+++..|+.||+.+++ ++|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999886543 35789999999999876 4899999999999999999998
Q ss_pred H
Q 000434 730 R 730 (1513)
Q Consensus 730 ~ 730 (1513)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 5
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=8.2e-179 Score=1667.72 Aligned_cols=639 Identities=39% Similarity=0.709 Sum_probs=601.8
Q ss_pred CCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000434 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1513)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1513)
.+|||+.|++|||++||++|+.||.++.||||+|+||||||||+.+| +|+++++..|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~ 222 (1513)
|...++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred EcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000434 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DT 296 (1513)
Q Consensus 223 f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1513)
|+.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999887777775 46
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCC---CCccccccccchHHHHHHHHHcCCCHHHHHHHHh
Q 000434 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALI 373 (1513)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~ 373 (1513)
++|..|+.||.+|||+++++..||+|||||||||||+|.+.+. .+.+.+.+ ...+..||+||||+.++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 23334433 45799999999999999999999
Q ss_pred hceeeeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCC-----CCeEEEEecccccccCCCCCHHH
Q 000434 374 NRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQ 448 (1513)
Q Consensus 374 ~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 448 (1513)
++++.++++.+++|+++++|.++||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986543 35799999999999999999999
Q ss_pred HHhhhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHH
Q 000434 449 FCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQT 528 (1513)
Q Consensus 449 lciNyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~ 528 (1513)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCcccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHH
Q 000434 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1513)
Q Consensus 529 ~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1513)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 86 4678889888889999999999999999999999999999999999987 489999
Q ss_pred HHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCC
Q 000434 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1513)
Q Consensus 609 f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1513)
||.||++||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred CCCCchHHHHHHHHHHcCCCCceeccchhhhchhhhHHHHHHH
Q 000434 689 DGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 689 ~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999864
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-178 Score=1537.01 Aligned_cols=694 Identities=41% Similarity=0.719 Sum_probs=649.3
Q ss_pred CCCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000434 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1513)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~A 139 (1513)
...|||||+-|+-++|.+|..||+.||.++.||||+|+|||+||||+.+| +|++..|..|+|+...+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
|++|.-..+|||||||||||||||++||+||+|++.+|+ .+.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3455667889999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1513)
||+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+.+.|..||+..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceee
Q 000434 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1513)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~ 378 (1513)
|++|..||+++|+.++||+.||++||+|||||||.|.+. ...+.+.+. ..++-.|.|||||...|++.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999873 233444443 368999999999999999999999987
Q ss_pred eC----CceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCC-CCeEEEEecccccccCCCCCHHHHHhhh
Q 000434 379 TP----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1513)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1513)
+. .+++.+||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 63 579999999999999999999999999999999999999975433 5789999999999999999999999999
Q ss_pred hhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhccCC----CCchHHHHHHHHHH
Q 000434 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQT 528 (1513)
Q Consensus 454 anE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~----~~~d~~~~~kl~~~ 528 (1513)
.||||||.|++-+++.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|||.|.-. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4779999999999754 46799999999999
Q ss_pred hcCCCCcccCCCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHH
Q 000434 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1513)
Q Consensus 529 ~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1513)
+++||+|.. ....|+|+||||+|+||++||.+||||.|..|++.|++.|.++|++.||+...+..+ ..+.+|.|++
T Consensus 489 ~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds-krRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS-KRRPPTAGDK 564 (1106)
T ss_pred hcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc-cCCCCCchhh
Confidence 999999974 247899999999999999999999999999999999999999999999997554433 3466899999
Q ss_pred HHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCC
Q 000434 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1513)
Q Consensus 609 f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1513)
.++|-++|++||..|.||||||||||+.|.|+.||..+|++|+.|+|+-|.|||||+||.+|..|+.|+.||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C-CCCchHHHHHHHHHHcCC--CCceeccchhhhchh-hhHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000434 689 D-GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIV 764 (1513)
Q Consensus 689 ~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~ 764 (1513)
. ...|++.+|+.||+...+ +.||+|+||||++.. .+-.||.+|.......|..||++||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 346899999999998765 589999999999986 467899999999999999999999999999999888876544
No 18
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.9e-177 Score=1676.68 Aligned_cols=666 Identities=54% Similarity=0.915 Sum_probs=630.4
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000434 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1513)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 140 (1513)
..+++||+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|+++.+..|+++..+++|||||+||++||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEE
Q 000434 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1513)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~ 220 (1513)
+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 24679999999999999999999999999999999999
Q ss_pred EEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000434 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1513)
Q Consensus 221 l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1513)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcc-ccccccchHHHHHHHHHcCCCHHHHHHHHhhceee
Q 000434 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1513)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~ 378 (1513)
.+++.||+.|||+++++.+||+|||||||||||+|.+.++.++. .+. +...++.||.||||+.++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999875432221 232 34579999999999999999999999999
Q ss_pred eCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHH
Q 000434 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1513)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~L 458 (1513)
+++|.+++++++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998767889999999999999999999999999999999
Q ss_pred HhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCcccC
Q 000434 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1513)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~ 538 (1513)
|++|++++|+.||++|++|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHH
Q 000434 539 K-LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 617 (1513)
Q Consensus 539 ~-~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~ 617 (1513)
+ ..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++|+.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 456799999999999999999999999999999999999999999999998754433334467899999999999999
Q ss_pred HHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCC-CCchHH
Q 000434 618 ETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKV 696 (1513)
Q Consensus 618 ~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~ 696 (1513)
++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..++++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865432 246899
Q ss_pred HHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 697 ACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 697 ~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
.|+.||+.+++ ++|++|+||||||++++..||+.|
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R 676 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELR 676 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhc
Confidence 99999999865 589999999999999999999887
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2e-175 Score=1664.32 Aligned_cols=662 Identities=53% Similarity=0.871 Sum_probs=621.1
Q ss_pred CCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000434 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1513)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 142 (1513)
|++||+.|++|||++||++|+.||.++.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||++||++
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~ 222 (1513)
|.++++||||||||||||||||++|++|+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 357999999999999999999999999999999999999
Q ss_pred EcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000434 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1513)
Q Consensus 223 f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1513)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 689999999999999999999999988899999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCc--cccccccchHHHHHHHHHcCCCHHHHHHHHhhceeee
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~ 379 (1513)
++.||++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.+|+||||+.++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987544332 3333 345799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCCHHHHHhhhhhHHHH
Q 000434 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 459 (1513)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq 459 (1513)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||+||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887677899999999999999999999999999999999
Q ss_pred hHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCCCccc-C
Q 000434 460 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-P 538 (1513)
Q Consensus 460 ~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~-~ 538 (1513)
|+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||++.+++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998744 4
Q ss_pred CCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccc-----------cCCCCCccchH
Q 000434 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------SKSSKFSSIGS 607 (1513)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------~~~~~~~tv~~ 607 (1513)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ .+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 4456799999999999999999999999999999999999999999999998642211 12225689999
Q ss_pred HHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccCCC
Q 000434 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1513)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1513)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
..........|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333344449999998876 489999999999999999999754
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.1e-175 Score=1652.97 Aligned_cols=660 Identities=31% Similarity=0.499 Sum_probs=591.2
Q ss_pred CCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000434 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1513)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 143 (1513)
||||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| ||++++++.|+++..+++|||||+||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEEE
Q 000434 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 223 (1513)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~f 223 (1513)
..+++||||||||||||||||++|+||+|||.+++..+. ..++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 1234 57999999999999999999999999999999999
Q ss_pred cCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCC-CccccCCCCcHHHHHH
Q 000434 224 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQS-NCYALDGVDDTEEYLA 301 (1513)
Q Consensus 224 ~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~-~~~~~~~~dd~~~f~~ 301 (1513)
|.+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++..+.+.+.+ .+...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 68899999999876554333332 2334678999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCC
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 381 (1513)
|+.||++|||+++++..||+|||||||||||+|.... +.+.+.+ .+.++.||+||||+.++|.++|+++++..++
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3479999999999999999999998776553
Q ss_pred c-------------eEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCC-----
Q 000434 382 E-------------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL----- 443 (1513)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1513)
+ .++.++++.+|.++||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678999999999999999999999999999999998766678999999999999984
Q ss_pred -CCHHHHHhhhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccc-cChHHHHHHhhcCc--------------ccccccc
Q 000434 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALL 507 (1513)
Q Consensus 444 -NsfeQlciNyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~--------------~Gil~lL 507 (1513)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 4999999
Q ss_pred hhhccCCCCchHHHHHHHHHHhcCCCCcccCC------CCCCCeEEEccCcc--eeeechhhhhhccccc-hHHHHHHHh
Q 000434 508 DEACMFPKSTHETFAQKLYQTFKSNKRFIKPK------LSRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLT 578 (1513)
Q Consensus 508 dee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~------~~~~~F~i~Hyag~--V~Y~~~gflekN~d~~-~~~~~~ll~ 578 (1513)
||||++|++||++|++||++.|++|++|.+++ .....|+|+||||. |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999998887622 12468999999995 9999999999999975 689999999
Q ss_pred hcCchhhhccCCCCCc-------------ccc----------C--------CCCCccchHHHHHHHHHHHHHHcccCCee
Q 000434 579 ASKCPFVSGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1513)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~L~~~l~~t~~hf 627 (1513)
+|++++|+.||+.... ..+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999964210 000 0 01345899999999999999999999999
Q ss_pred EeecCCCCCCC----------------------CCCCChhhHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhccC
Q 000434 628 IRCVKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 685 (1513)
Q Consensus 628 irCIkPN~~~~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~ 685 (1513)
|||||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999987
Q ss_pred CCCC------CCCchHHHHHHHHHHcCC--CCceeccchhhhchhhhHHHHHHH
Q 000434 686 DVLD------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1513)
Q Consensus 686 ~~~~------~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1513)
.... ...|++++|+.||+.+++ ++|+||+||||||+++++.||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6432 235889999999999876 489999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=3.2e-167 Score=1611.99 Aligned_cols=653 Identities=50% Similarity=0.877 Sum_probs=579.3
Q ss_pred CCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000434 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1513)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 143 (1513)
||||+.|++|||++||++|+.||..+.||||+|++|||||||+++| +|+++++..|+++..+++|||||+||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-CCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000434 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1513)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~~l~ 222 (1513)
.++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred EcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000434 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1513)
Q Consensus 223 f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1513)
||.+|.++||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhceeeeCC
Q 000434 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1513)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 381 (1513)
++.||++|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..++.||.||||++++|.++||++++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765555555543 359999999999999999999999999999
Q ss_pred ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCC-CCCeEEEEecccccccCCCCCHHHHHhhhhhHHHHh
Q 000434 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 460 (1513)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE~Lq~ 460 (1513)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..|||||||||||||+||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998876 678999999999999999999999999999999999
Q ss_pred HhHHhHHhhhHHHhhhcCCccccccc-cChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHh-cCCCCcccC
Q 000434 461 HFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKP 538 (1513)
Q Consensus 461 ~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~~ 538 (1513)
+|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999888
Q ss_pred C----CCCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCc--------------c-----
Q 000434 539 K----LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE--------------E----- 595 (1513)
Q Consensus 539 ~----~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~----- 595 (1513)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976431 0
Q ss_pred --ccCCCCCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcCCCcccCh
Q 000434 596 --SSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1513)
Q Consensus 596 --~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 673 (1513)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|++||++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCC----CCchHHHHHHHHHHcCC--CCceeccchhhhc
Q 000434 674 YEFLHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 720 (1513)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 720 (1513)
.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999975532 46899999999999987 6899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=8.5e-116 Score=1108.81 Aligned_cols=751 Identities=36% Similarity=0.575 Sum_probs=661.3
Q ss_pred CCCCCcccCCCCCCchhHHHHHHHHhccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000434 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1513)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay 140 (1513)
..+++||+.|.+++|+.+++||..||..+.||||+|+||++||||+.+|-+|.+..+..|.+...+++|||||++|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc-CCCCCCCccHHHHHhhhchHHHhhcCccccCCCCCCCcccEE
Q 000434 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG-GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1513)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~-~~~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRfGk~~ 219 (1513)
+.|.+...||||+|||||||||||+|+++++||+.++ +. ...++++|+.+||+|||||||+|.+|||||||||||
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~----~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGN----NSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCC----CCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 9999999999999999999999999999999999998 33 256889999999999999999999999999999999
Q ss_pred EEEEcCCCCcccceeeeecccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcHH
Q 000434 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDTE 297 (1513)
Q Consensus 220 ~l~f~~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~dd~~ 297 (1513)
++.|...|.|.||++.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+++|.||+++.+..+ ++.+|..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999 6778899999999999999999999999 9999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeEEEecC--CCCccccccccchHHHHHHHHHcCCCHHHHHHHHhhc
Q 000434 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1513)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~ 375 (1513)
+|..+..||..+||+.+++.+||+++|||||+|||+|.... ..|.+.+.+ ...+..+|.||+++.+.|.+++|.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999997532 234455544 3479999999999999999999999
Q ss_pred eeeeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCC--CCeEEEEecccccccCCCCCHHHHHhhh
Q 000434 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1513)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1513)
+..++++.+..+++.++|.++|||+||.||++||.|||.+||..+..+.. ...+||||||||||+|+.|||||+||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987655 3789999999999999999999999999
Q ss_pred hhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhccCCCCchHHHHHHHHHHhcCCC
Q 000434 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNK 533 (1513)
Q Consensus 454 anE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~ 533 (1513)
|||+||++||+|||..||+||..|+|+|..|.|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+++.+.
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~ 532 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNN 532 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcccCCC-CCCCeEEEccCcceeeechhhhhhccccchHHHHHHHhhcCchhhhccCCCCCccc----------------
Q 000434 534 RFIKPKL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES---------------- 596 (1513)
Q Consensus 534 ~~~~~~~-~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---------------- 596 (1513)
.|..|+. ..+.|+|.||||.|.|++.||+|||+|.++.+++.++++|.+.++..++...+...
T Consensus 533 ~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~ 612 (1062)
T KOG4229|consen 533 LYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVP 612 (1062)
T ss_pred ccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhccccccc
Confidence 8877765 45799999999999999999999999999999999999999888877664311000
Q ss_pred -------------------------------------------------c------------------------------
Q 000434 597 -------------------------------------------------S------------------------------ 597 (1513)
Q Consensus 597 -------------------------------------------------~------------------------------ 597 (1513)
.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 613 LEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred chhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 0
Q ss_pred -C----------CC--------------C--------------------------------------------------C
Q 000434 598 -K----------SS--------------K--------------------------------------------------F 602 (1513)
Q Consensus 598 -~----------~~--------------~--------------------------------------------------~ 602 (1513)
+ .. + .
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred hcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCcccc
Confidence 0 00 0 0
Q ss_pred ccch----------------HHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhccchHHHHHhhhcC
Q 000434 603 SSIG----------------SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAG 666 (1513)
Q Consensus 603 ~tv~----------------~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~G 666 (1513)
..++ .++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~ 852 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSL 852 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecc
Confidence 0011 122334455777788889999999999988888999999999999999999999999999
Q ss_pred CCcccChHHHHHHhhhccCCCCCCCCchHHHHHHHHHH--cCCCCceeccchhhhchhhhHHHHHHH-HHHhhhHHHHHH
Q 000434 667 YPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDK--MGLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARIIQ 743 (1513)
Q Consensus 667 yp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVFlr~~~~~~Le~~r-~~~l~~~a~~IQ 743 (1513)
|+..+++.+|...+.+..+.... ......... ...++++.|++++|+.......++..- .+.....+...|
T Consensus 853 ~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 926 (1062)
T KOG4229|consen 853 YFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQ 926 (1062)
T ss_pred ccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHH
Confidence 99999999999999988773211 111112221 134689999999999876554443322 222221367789
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 000434 744 RQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVA 822 (1513)
Q Consensus 744 ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~-~~r~~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~la 822 (1513)
++++....|+.+.++..+.+.+| |++++.|+... ......++.-+|..|+.+..+..+...+.+.+.+|..+++..-
T Consensus 927 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1004 (1062)
T KOG4229|consen 927 KWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAY 1004 (1062)
T ss_pred HHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchh
Confidence 99999999999999999999999 88888776443 2234467888999999999999999999999999999888766
Q ss_pred HHHH
Q 000434 823 RNEF 826 (1513)
Q Consensus 823 Rr~~ 826 (1513)
++.+
T Consensus 1005 ~~~~ 1008 (1062)
T KOG4229|consen 1005 TMIF 1008 (1062)
T ss_pred hhhH
Confidence 6554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=3.1e-30 Score=307.21 Aligned_cols=299 Identities=17% Similarity=0.295 Sum_probs=236.7
Q ss_pred HHHHhhhcCCCCcCCccchHHHHHHHHhcccc--cchhh----hHHHHHHHHHHHHHhhcc-CCCcccchhhhhHHHHHH
Q 000434 1104 LLIKCVSQNLGFSRSKPVAASVIYKCLLHWRS--FEVER----TTVFDRIIQTIASAIEVQ-DNNDVLAYWLSNSSTLLL 1176 (1513)
Q Consensus 1104 ~l~~~~~~~~~~~~~kp~pA~il~~cl~~~~~--~~~~~----~~ll~~i~~~I~~~v~~~-~d~~~layWLsN~~~Ll~ 1176 (1513)
.|-..+..+.+....+..|.|- |..-.|.+. +..++ ..|+.++++++..+++++ ++.+.|+|||+|+++++|
T Consensus 553 fL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflh 631 (1629)
T KOG1892|consen 553 FLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLH 631 (1629)
T ss_pred HHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHH
Confidence 3444444455544555555542 222223332 55555 779999999999999988 666799999999999999
Q ss_pred HHHHhhhhccCCcCCccccccccccccccccccccCCCCCCCcccccCCcccccchhhhhhhhchHHHHHHHHHHHHHHH
Q 000434 1177 LLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKI 1256 (1513)
Q Consensus 1177 ~Lq~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv~~~~~~~~fkqqL~~~~~~i 1256 (1513)
|++++..-+. +-+.. ...|..+|+.+
T Consensus 632 fik~Dr~ls~-----------------------------------------------------~~~~a-q~vla~~vq~a 657 (1629)
T KOG1892|consen 632 FIKQDRDLSR-----------------------------------------------------ITLDA-QDVLAHLVQMA 657 (1629)
T ss_pred HHHhccchhh-----------------------------------------------------eehhH-HHHHHHHHHHH
Confidence 9998411000 00011 13488899999
Q ss_pred HHHHHHHHHhhhhhhhhhhccCCCCcccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000434 1257 YGMIRDNLKKDISPLLGLCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQI 1336 (1513)
Q Consensus 1257 y~~l~~~i~~~L~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~Ql 1336 (1513)
|..|+.|++.+|++.+..++.-- ......+.++|..|+..|.+|+.|+|+..|+.|+|+||
T Consensus 658 Fr~LV~clqsel~~~~~afLden-------------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqL 718 (1629)
T KOG1892|consen 658 FRYLVHCLQSELNNYMPAFLDEN-------------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQL 718 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-------------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999876654211 01234667899999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhcc--cCcccccchhHhhhchhHHHHHHhhcccccccchHHHhhhHHHHHHHHhccCCCccCHHHHHH
Q 000434 1337 FSFINVQLFNSLLLR--RECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITK 1414 (1513)
Q Consensus 1337 F~~Ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~ 1414 (1513)
|||||+++||+|+.. ..+|+--||.-|++.|..||.||+..|.++ .|.|||..|+||++||+++|....|+..+ .
T Consensus 719 fH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlEl--AAdCHL~ri~Qaa~lL~~~K~a~ddi~~l-~ 795 (1629)
T KOG1892|consen 719 FHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLEL--AADCHLSRIVQAATLLTMDKYAPDDIPNL-N 795 (1629)
T ss_pred HHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchH--hhhccHHHHHHHHHHHhccccChhhHHhh-c
Confidence 999999999999998 679999999999999999999999999554 45599999999999999998888888777 6
Q ss_pred hhCCCCCHHHHHHHHhcCcCCCCCCccCCHHHHHHHHhhhhccC-----CCCCCCcccccCCCCCCccccc
Q 000434 1415 ELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTEDS-----NNAVSSSFLLDDDSSIPFTVDD 1480 (1513)
Q Consensus 1415 ~~c~~Ls~~Ql~kIL~~Y~~d~~e~~~vs~~~i~~v~~~~~~~~-----~~~~~~~lllD~~~~~Pf~~~~ 1480 (1513)
..|.+||+.|+.+||..|++++.|+ ++|.+++..+..+..+.+ .++..-+|-.+++.-+||.+|+
T Consensus 796 stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 796 STCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred cchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 8899999999999999999999994 999999999876655432 2344456777888899999998
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=1.4e-27 Score=234.98 Aligned_cols=105 Identities=35% Similarity=0.664 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhHHHHHHhhcccCcccccchhHhhhchhHHHHHHhhcccccccchHHHhhhHHHHHHHHhccCCCccCHH
Q 000434 1331 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1410 (1513)
Q Consensus 1331 Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~ 1410 (1513)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++| ....++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~--l~~~~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHG--LEEAAEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTT--STTH-HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 899999999999999999999999999999999999999999999999 333379999999999999999876677776
Q ss_pred HHHHhhCCCCCHHHHHHHHhcCcCCCCC
Q 000434 1411 EITKELCPVLSIQQLYRISTMYWDDKYG 1438 (1513)
Q Consensus 1411 ~i~~~~c~~Ls~~Ql~kIL~~Y~~d~~e 1438 (1513)
.+ +++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 66 6999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.54 E-value=7.5e-11 Score=160.05 Aligned_cols=452 Identities=13% Similarity=0.089 Sum_probs=217.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc--eeeeCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEE
Q 000434 353 HLNTTAELLKCDAKSLEDALINR--VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTII 430 (1513)
Q Consensus 353 ~l~~~a~lLgv~~~~L~~~l~~~--~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~I 430 (1513)
.+..+-..||++++.....+--- .+..|+=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 46677789999998876554221 1122222222211334444333333322211 1111111222222211 12244
Q ss_pred EEecccccccCCCCCHHHHHhhhhhHHHHhHhHHhHHhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhh
Q 000434 431 GVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEA 510 (1513)
Q Consensus 431 giLDi~GFE~f~~NsfeQlciNyanE~Lq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee 510 (1513)
+-.++.|+.. +| .+++=+-|...-...+|. ....+...+++|. .+-+.+|.+++-...=||..
T Consensus 401 ~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQNV------EQ--VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcchH------HH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 4566666653 33 667777777666666664 5667778888887 44555666665332223322
Q ss_pred ccCCCCchHH----H-HHHHHHHhcCCCCcccC----CCCCCCeEEEccCcceeeechhhhhhccccchHHHHHHH----
Q 000434 511 CMFPKSTHET----F-AQKLYQTFKSNKRFIKP----KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL---- 577 (1513)
Q Consensus 511 ~~~~~~~d~~----~-~~kl~~~~~~~~~~~~~----~~~~~~F~i~Hyag~V~Y~~~gflekN~d~~~~~~~~ll---- 577 (1513)
.|-+. | .+||.+-| +|.-|+.- +--.-.+..-|| |-=-=.+.+-|+|=. .+..+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHHHH
Confidence 12111 1 23444333 34444321 011235677777 222223334444422 333333
Q ss_pred ---hhcCchhhhccCCCCCccccCCCCCccchHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChhhHHHHhhcc
Q 000434 578 ---TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCG 654 (1513)
Q Consensus 578 ---~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~~v~~QLr~~ 654 (1513)
.+|...|+..|+..-. ++.++|.... +.+....+...+-+.+ |+|.-+|-..++..-....|+.+|++.
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2344455554443210 1222332221 3344555555566666 999999999998888899999999999
Q ss_pred chHHHHHhhhcCCCcccChHHHHHHhhhccCCCCCCCC-----chHHHHHHHHHHcCCCCceeccchhhh---chhh---
Q 000434 655 GVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNY-----DDKVACEKILDKMGLKGYQIGKTKVFL---RAGQ--- 723 (1513)
Q Consensus 655 gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~-----~~~~~~~~il~~~~~~~~~iGkTkVFl---r~~~--- 723 (1513)
+ .+.|..--.| +..+..+..++.. ......+.. -.+.....++..+....-.|=+--|+. ++|+
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~ 678 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDA 678 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCH
Confidence 9 8888776666 6677777777665 211111111 112222233333222111111111111 0111
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHh-------hhhHHHH
Q 000434 724 MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQS--YWRGILA-----CKLYEQLR-------REAAALK 789 (1513)
Q Consensus 724 ~~~Le~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~--~~Rg~la-----Rk~~~~~r-------~~~AA~~ 789 (1513)
-..|..+| ++..--.|=-+..||-.|..|...+.---.+.. .-.|+.. ++.+..+. ....-+.
T Consensus 679 ~lvl~QLr---cngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvF 755 (1930)
T KOG0161|consen 679 PLVLNQLR---CNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVF 755 (1930)
T ss_pred HHHHHHhh---ccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeee
Confidence 11222222 111112222233466665555443211111111 1111111 11111111 0111122
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000434 790 IQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQT-KAAIIIEAYLRRHTACSYYK 852 (1513)
Q Consensus 790 IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr~~~~l~~~-~aAv~IQ~~~R~~~~r~~~~ 852 (1513)
.++-+-+++.-.+-..+...++.+|+.+||+++|+.|.++.+. .++.+||+++|.|+..+.|.
T Consensus 756 fkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 756 FKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 3333334444455556666788999999999999999876554 56779999999999888876
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.70 E-value=2.3e-08 Score=109.39 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCC--ccHHHHHhhhchHHHhhc-CccccC
Q 000434 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEG--RTVEQQVLESNPVLEAFG-NAKTVR 208 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~--~~i~~~il~snpiLEaFG-NAkT~~ 208 (1513)
||+.+..++..|. ++.|+||+..|+||||||+|..- .....+ ..+-+.+++..+..++++ +|.|.+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G----------~~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~ 76 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEG----------KREGAGIIPRTVTDVIDLMDKGNANRTTAATAM 76 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCC----------CCCCCCcchHHHHHHHHHHhhccccccccccCC
Confidence 8998889999998 57999999999999999987541 111111 112223778888999999 999999
Q ss_pred CCCCCCcccEEEEEEcCCCCcc
Q 000434 209 NNNSSRFGKFVELQFDKNGRIS 230 (1513)
Q Consensus 209 N~NSSRfGk~~~l~f~~~g~i~ 230 (1513)
|++|||+..+++|++.......
T Consensus 77 N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 77 NEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred CCccCcccEEEEEEEEEeecCC
Confidence 9999999999999998655444
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.36 E-value=0.00048 Score=91.20 Aligned_cols=132 Identities=22% Similarity=0.124 Sum_probs=89.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 000434 746 IRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLR-REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1513)
Q Consensus 746 ~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r-~~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr 824 (1513)
+-+.+.-++-..+...++.||+.|||+..|++|.... +.+++..+|..+|-+ .+..+--...+.+.+|+.||....|+
T Consensus 732 vL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 732 VLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhcccchHHHhHHHhhHHhHHHhhHH
Confidence 4456677777778889999999999999998886543 334444455545444 23334444557889999999998888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000434 825 EFRFRKQTKAAIIIEA-YLRRHTACSY--YKSLKKAAVITQCGWRRRVARRELRNLKMA 880 (1513)
Q Consensus 825 ~~~~l~~~~aAv~IQ~-~~R~~~~r~~--~~~~~~a~~~iQ~~~R~~~arrel~~Lk~~ 880 (1513)
.++... ..+..+|. -++....+.. -....+++..+|..||...+++.+..++..
T Consensus 811 ~~~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~ 867 (1463)
T COG5022 811 EYRSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKE 867 (1463)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 876543 45556773 3333333332 334467888999999999988888877744
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.29 E-value=1.3e-06 Score=111.33 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHhHHHh
Q 000434 735 LGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRR--------EAAALKIQKNFHSYTARTSYLTA 806 (1513)
Q Consensus 735 l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r~--------~~AA~~IQ~~~R~~~~Rr~y~~~ 806 (1513)
...++..||+++|+|..|+.|+-+|.-++.||+.+||+..|+.|..+-. .-++.++|+.+|+|+.|......
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 3568889999999999999999999999999999999999999876431 12445556666666555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 807 RSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSL 854 (1513)
Q Consensus 807 r~a~i~IQs~~Rg~laRr~~~~l~~~~aAv~IQ~~~R~~~~r~~~~~~ 854 (1513)
-.+++.||..+|-+..-++.-..+.++|++.||+.+|.+.++..|+++
T Consensus 889 ~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 889 ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 545555555555554432222233345555555555555555544433
No 29
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.22 E-value=7.5e-06 Score=104.78 Aligned_cols=86 Identities=33% Similarity=0.398 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 784 EAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQC 863 (1513)
Q Consensus 784 ~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr~~~~l~~~~aAv~IQ~~~R~~~~r~~~~~~~~a~~~iQ~ 863 (1513)
..+++.||+.+|+|..|+.|..+|.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999998 333 778999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000434 864 GWRRRVARR 872 (1513)
Q Consensus 864 ~~R~~~arr 872 (1513)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999988
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.16 E-value=5.4e-06 Score=66.97 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCceEEEEEEEecCCeEEEEeCCCcEEEEeCC
Q 000434 10 GSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNIS 50 (1513)
Q Consensus 10 g~~vw~~~~~~~w~~~~v~~~~~~~~~v~~~~~~~~~~~~~ 50 (1513)
+.+|||||++++|+.|+|++.+|+.++|.+.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999887754
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.91 E-value=1.8e-05 Score=101.32 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=116.7
Q ss_pred hhhhchhhhHHH--HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000434 716 KVFLRAGQMAEL--DARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKN 793 (1513)
Q Consensus 716 kVFlr~~~~~~L--e~~r~~~l~~~a~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~ 793 (1513)
.+|.+..+.+.. ...+..........++..++++..|. .-.++..||.++|||+.|+.|...|. -+++||+.
T Consensus 769 ~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~----~~~aa~~iq~~f~~yk~r~~~l~tr~--p~v~iqa~ 842 (975)
T KOG0520|consen 769 QSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRS----DPAAASRIQKKFRGYKQRKEFLSTRQ--PIVKIQAA 842 (975)
T ss_pred hhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCcccc----chhHHHHhhhhhhhHHhhhhhcccCC--ccccchhh
Confidence 445544333222 23333344445556666666443333 23678999999999999999988885 47899999
Q ss_pred HHHHHHHHhHHHhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000434 794 FHSYTARTSYLTAR----------SSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTAC--SYYKSLKKAAVIT 861 (1513)
Q Consensus 794 ~R~~~~Rr~y~~~r----------~a~i~IQs~~Rg~laRr~~~~l~~~~aAv~IQ~~~R~~~~r--~~~~~~~~a~~~i 861 (1513)
+|+|..|+.|.++- .++..+|..+||+..|+..+.. +.||+.||...|.|..- ..|.++.+|++.|
T Consensus 843 ~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~V 920 (975)
T KOG0520|consen 843 VRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRV 920 (975)
T ss_pred hhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998653 3456778888888888766543 35899999999999877 7789999999999
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 000434 862 QCGWRRRVARRELRNLKMA 880 (1513)
Q Consensus 862 Q~~~R~~~arrel~~Lk~~ 880 (1513)
|+.+|...++.+++++...
T Consensus 921 Qsm~rs~~a~qqyrR~~~~ 939 (975)
T KOG0520|consen 921 QSMFRSPKAQQQYRRLLLV 939 (975)
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 9999999999888877643
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.072 Score=67.37 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000434 1301 LIAHWQSIVKSLNSYLKTMKVNYVPPFLV 1329 (1513)
Q Consensus 1301 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~ 1329 (1513)
|..++...+..+++.+..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45678888888999988888877766544
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.013 Score=72.43 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.7
Q ss_pred cccccchhHhhh
Q 000434 1354 CCSFSNGEYVKA 1365 (1513)
Q Consensus 1354 ~cs~s~G~qIr~ 1365 (1513)
-.-|--|.-++-
T Consensus 1011 ~sGWWeGELqar 1022 (1118)
T KOG1029|consen 1011 ASGWWEGELQAR 1022 (1118)
T ss_pred CCccchhhHhhc
Confidence 333444443333
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.7 Score=58.00 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHH
Q 000434 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQ 1026 (1513)
Q Consensus 975 ~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~ 1026 (1513)
..+|+....+-+.-...+++.+++++++.+....+.+-...+++++.+....
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344444333333333444444444444333333333333334444443333
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.29 E-value=2.1 Score=60.56 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=4.1
Q ss_pred cchhhhhH
Q 000434 1164 LAYWLSNS 1171 (1513)
Q Consensus 1164 layWLsN~ 1171 (1513)
+.||++++
T Consensus 616 ~~~~lg~~ 623 (1164)
T TIGR02169 616 FKYVFGDT 623 (1164)
T ss_pred HHHHCCCe
Confidence 44555554
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.20 E-value=2.6 Score=59.78 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 000434 520 TFAQKLYQ 527 (1513)
Q Consensus 520 ~~~~kl~~ 527 (1513)
++++.+.-
T Consensus 38 ~ildAi~~ 45 (1164)
T TIGR02169 38 NIGDAILF 45 (1164)
T ss_pred HHHHHHHH
Confidence 34444443
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.18 E-value=0.073 Score=69.21 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH-------hhHHHHHHHHHHHHHHHHHHH--------------
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV-------RNTELVKKLEDTEEKVGQLQE-------------- 1029 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~-------~~~~l~~~l~~le~ei~~Lq~-------------- 1029 (1513)
.+.+..+|+.|.++|+.++...++.+..++.+..++.. +.+.+...|..++++..+|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35566777788888888777777777777776654432 233444445555555444443
Q ss_pred -------HHHHHHHHHHhhHHHHHHHHHHHh
Q 000434 1030 -------SMQRLEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1030 -------e~~~Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
+++-++.++..-+.|...|+++..
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333344455666666776543
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.13 E-value=0.076 Score=66.19 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000434 1022 EKVGQLQESMQRLEEKLCN 1040 (1513)
Q Consensus 1022 ~ei~~Lq~e~~~Lee~i~~ 1040 (1513)
.++.+|+.+.++|+..+.+
T Consensus 233 ~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 233 QQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.10 E-value=1 Score=59.44 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 979 TAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 979 ~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
..++.+.+.++..++.+++.++..+..+.++.++..+++.+.+++....+.++..++.++.....++..|+
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444455555555555555555554444444444
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.29 Score=63.27 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=15.7
Q ss_pred ecCCCCCCchhhHHHHHHHHHHhcC
Q 000434 154 VSGESGAGKTETTKMLMRYLAYLGG 178 (1513)
Q Consensus 154 isGeSGaGKTe~~k~~~~yla~~~~ 178 (1513)
|+|=.|||||- |+.-++.+-|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 68999999996 5666666544
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=1.4 Score=58.37 Aligned_cols=16 Identities=25% Similarity=0.032 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHhcCcC
Q 000434 1419 VLSIQQLYRISTMYWD 1434 (1513)
Q Consensus 1419 ~Ls~~Ql~kIL~~Y~~ 1434 (1513)
.||+.=|.=.|.+|+|
T Consensus 1202 TLSSLALVFALH~YkP 1217 (1293)
T KOG0996|consen 1202 TLSSLALVFALHHYKP 1217 (1293)
T ss_pred HHHHHHHHHHHHccCC
Confidence 3444444444445544
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.89 E-value=0.29 Score=63.84 Aligned_cols=70 Identities=9% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 980 AEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 980 ~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
++.+.|-..+..++++...||..+.....-+.+|-.-|-+...+++-++..+..-+.+|.+|+..+..+-
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777777777666555555566666777777777777777777777777777665544
No 43
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.87 E-value=0.00047 Score=91.10 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHHHHcccCCeeEeecCCCCCCCCCCCChh-hHHHHhhccchHHHHHhhhcCCCcccChHHHHHHhhhc
Q 000434 605 IGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1513)
Q Consensus 605 v~~~f~~~l~~L~~~l~~t~~hfirCIkPN~~~~p~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 683 (1513)
++.+++-++.+....|-+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 45566667888888888999999999999999999999987 89999999999999999999999999999998877754
Q ss_pred cCCCCCCCCchHHHHHHHHHHcCCCCceeccchhhhch
Q 000434 684 APDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRA 721 (1513)
Q Consensus 684 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~ 721 (1513)
.-.....+.-...+|..++.+.+.+.+..+.++++.+.
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 761 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRY 761 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhccccccc
Confidence 32221111123456677777777777888888877764
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.82 E-value=2.8 Score=53.87 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
.++.++++...+.+-.....+.+.++.+..|++.+..++.+
T Consensus 507 kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 507 KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555556666666666666666666665543
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.75 Score=59.71 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 885 GALKEAKDKLEKRVEELTWRLQFEK 909 (1513)
Q Consensus 885 ~~L~~~~~~Le~~l~el~~~l~~e~ 909 (1513)
..+......+...+++++.++.+.+
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~ 761 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKE 761 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544433
No 46
>PRK11637 AmiB activator; Provisional
Probab=96.80 E-value=0.14 Score=63.97 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~L 1048 (1513)
+..++.+....+.++.+|+.+...++..+..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.78 E-value=0.21 Score=52.07 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 921 QEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEAR 1000 (1513)
Q Consensus 921 ~e~~~L~~~~eeLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le 1000 (1513)
.++..|++.+..++.+++.+...+......+...-. .....+.|...+..|+.+++..+..+....
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------------~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------------RKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777766665443333322111 122334566666666666666666666666
Q ss_pred HHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 1001 KACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1513)
Q Consensus 1001 ~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~ 1039 (1513)
+++.++....+....++..++.+...+...+..+..+..
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666555555555555555555555555555554444443
No 48
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.76 E-value=0.033 Score=74.18 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHhHHHh-------hhhHHHHHHHHHHHHH--HHHHHHHH
Q 000434 763 IVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTA-------RSSAIQLQTGLRAMVA--RNEFRFRK 830 (1513)
Q Consensus 763 i~IQ~~~Rg~laRk~~~~~r~~~A---A~~IQ~~~R~~~~Rr~y~~~-------r~a~i~IQs~~Rg~la--Rr~~~~l~ 830 (1513)
+..|+.+||..-|....++-...+ ..++|+..||+..|..+... -..+..+|+.|||++. -+......
T Consensus 511 is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~ 590 (1401)
T KOG2128|consen 511 ISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDS 590 (1401)
T ss_pred hhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHH
Confidence 335555555554443332221111 12346666666655544322 1234556666666652 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHH
Q 000434 831 QTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRELRNLK 878 (1513)
Q Consensus 831 ~~~aAv~IQ~~~R~~~~r~~~~~~~-------~a~~~iQ~~~R~~~arrel~~Lk 878 (1513)
..+.++.+|+..|++..|+.+.+.. .+.+.+|++.|....|..++.+.
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 3355566666666666666554432 35666676666666666666554
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.75 E-value=2.4 Score=60.07 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
+++...+...+.++..++.++.+++.++..++.+.+.+++.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666655555543
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.74 E-value=2.4 Score=56.28 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee 1036 (1513)
+.+.+.|++++++++..+.+|.++.++..+++.+.+++......++..+...+.....+++.|.+
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666666666555555555555555555555555555555555555544
No 51
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.68 E-value=0.027 Score=69.49 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 000434 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKS--------- 853 (1513)
Q Consensus 783 ~~~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr~~~~l~~~~aAv~IQ~~~R~~~~r~~~~~--------- 853 (1513)
...-++.||+.||||++|.+|++++.+++.|+ +||.+..+ ..+..||+.+|++..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~ 764 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPL 764 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCch
Confidence 33456778888888888888888877777777 66643221 334467777777777777643
Q ss_pred -HHHHHHHHHhhHHHHHHHHHHH
Q 000434 854 -LKKAAVITQCGWRRRVARRELR 875 (1513)
Q Consensus 854 -~~~a~~~iQ~~~R~~~arrel~ 875 (1513)
++.+...+|..+-+|.+.+-++
T Consensus 765 ~Lr~~~~~L~~lf~rwra~~~~~ 787 (1001)
T KOG0164|consen 765 VLREFEELLRELFIRWRAWQILK 787 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444555544444444333
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.64 E-value=6.3 Score=55.59 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~e 1044 (1513)
+..++.+++.++..++..+.+++.++..++..
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 458 LRDRLKELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 53
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.53 E-value=1.3 Score=55.52 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=34.5
Q ss_pred hcCCCCCCCccHHHHHhhhchHHHhhcCccccC------CCCCCCcccEEEEEEcCCCCcccceeeeecccCccccc
Q 000434 176 LGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVR------NNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVCQ 246 (1513)
Q Consensus 176 ~~~~~~~~~~~i~~~il~snpiLEaFGNAkT~~------N~NSSRfGk~~~l~f~~~g~i~ga~i~~ylLEksRvv~ 246 (1513)
|||-+|...+.-.+-|| -.+-|++|.|..+. |+-=--||-=-.+-=+ +..=-|--|+...=+|+-||.
T Consensus 149 VSGESGAGKTEstK~vL--rYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNN-NSSRFGKFveiHf~dk~~VvG 222 (1259)
T KOG0163|consen 149 VSGESGAGKTESTKAVL--RYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNN-NSSRFGKFVEIHFDDKGQVVG 222 (1259)
T ss_pred EecCCCCCcchhHHHHH--HHHHhccCCCCcHHHHHhccChHHHHhccchhhccC-ChhhccceEEEEEcCCCceec
Confidence 45555443222223343 24667777775542 4434445543333222 223456667777778888863
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.48 E-value=3.9 Score=57.94 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.7
Q ss_pred HHHHHHcC
Q 000434 699 EKILDKMG 706 (1513)
Q Consensus 699 ~~il~~~~ 706 (1513)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 44454444
No 55
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.8 Score=55.26 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1010 ~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
..++..++...+.++..|..+-..|+..+..++.+..+-++
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666777777776655554433
No 56
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.43 E-value=0.004 Score=42.40 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 000434 786 AALKIQKNFHSYTARTSY 803 (1513)
Q Consensus 786 AA~~IQ~~~R~~~~Rr~y 803 (1513)
||++||+.||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444443
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.42 E-value=0.54 Score=58.60 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=5.6
Q ss_pred hhhcCCCcccCh
Q 000434 662 ISCAGYPTRRTF 673 (1513)
Q Consensus 662 i~~~Gyp~r~~~ 673 (1513)
|.+.||.+-..|
T Consensus 42 iFKVGw~s~rdY 53 (546)
T PF07888_consen 42 IFKVGWSSTRDY 53 (546)
T ss_pred EeecCCCchhhe
Confidence 344555544333
No 58
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.36 E-value=0.0043 Score=42.25 Aligned_cols=20 Identities=70% Similarity=1.159 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000434 760 KAAIVLQSYWRGILACKLYE 779 (1513)
Q Consensus 760 ~a~i~IQ~~~Rg~laRk~~~ 779 (1513)
+|++.||++|||+++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 56777777777777777653
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.20 E-value=0.77 Score=59.54 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1513)
Q Consensus 885 ~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~ 917 (1513)
..+...++.|+.+++.|+.++.+.....++++.
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled 436 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELED 436 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677776666665555544443
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.15 E-value=1.3 Score=49.82 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED 1019 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~ 1019 (1513)
..+...|+.+...++.....++.++.++..+..+++.....+..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444444443333333333
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.12 E-value=12 Score=53.08 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 741 IIQRQIRTYIARKEFIALRKAAIVLQSYWRGIL 773 (1513)
Q Consensus 741 ~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~l 773 (1513)
.|..|+|-...-..+...+..+..++..++...
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~ 259 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQ 259 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444555566666666666555443
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.08 E-value=0.52 Score=50.56 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 976 ~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
..+++|++.++..+..+++....+-.+...++++...+..++..++++...+..+.+.+..+..+|-.++..|+.+.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34555666666666666666666666666666667777777778888888888888888888888877777777665
No 63
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.97 E-value=0.0063 Score=72.24 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=43.1
Q ss_pred ecCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHH
Q 000434 102 INPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTK 167 (1513)
Q Consensus 102 vNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k 167 (1513)
+|||...| |+......++. +.++|-|-|. +.-|..-..||+||++||.|||||+-.-
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~k-----~~F~~~l~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQK-----EEFLKLLLNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHhH-----HHHHHHHhcCceEEEEecCCCCccccCc
Confidence 99999987 88766555543 3567766543 5566667789999999999999997543
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.96 E-value=1.1 Score=58.26 Aligned_cols=79 Identities=10% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARK----------ACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~----------~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~L 1041 (1513)
......++.++..++.++..++..+.+++. ++.+++.........+.....+...++.++++|+....++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 344444555555555544444444443222 2222222223333333334444444444444444444444
Q ss_pred HHHHHHHHH
Q 000434 1042 ESENQVIRQ 1050 (1513)
Q Consensus 1042 e~en~~Lkq 1050 (1513)
+.+...+..
T Consensus 378 ~~~l~~l~~ 386 (562)
T PHA02562 378 AEELAKLQD 386 (562)
T ss_pred HHHHHHHHH
Confidence 444444433
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=95.96 E-value=7.2 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 1019 DTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 1019 ~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
+.+..+..++.++..+.+++..++.
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEA 433 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333
No 66
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.87 E-value=1.5 Score=48.30 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 000434 1028 QESMQRLEEKLCNSESEN 1045 (1513)
Q Consensus 1028 q~e~~~Lee~i~~Le~en 1045 (1513)
.+.+++|+++..+|..++
T Consensus 163 lesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 67
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.87 E-value=0.87 Score=57.25 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARK 1001 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~ 1001 (1513)
..++.++|++++..+...+..+.+..+..+.
T Consensus 349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~ 379 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALMDVRSIQEKKENVEE 379 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555555555555444444444444333
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.82 E-value=6.5 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1027 LQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1027 Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
+..++.+|+..+..-|..++.+-++
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444443
No 69
>PRK09039 hypothetical protein; Validated
Probab=95.79 E-value=0.78 Score=55.21 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 889 EAKDKLEKRVEELTWRLQFEKQLR 912 (1513)
Q Consensus 889 ~~~~~Le~~l~el~~~l~~e~~~~ 912 (1513)
++...++.++.++..-+..+....
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~ 76 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGN 76 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444333
No 70
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.75 E-value=3.5 Score=49.17 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLE 916 (1513)
Q Consensus 885 ~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le 916 (1513)
..+......+..++.+++.+++.+...+..++
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455444444444433333
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=95.74 E-value=2.9 Score=57.42 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=4.1
Q ss_pred hhhchhhh
Q 000434 717 VFLRAGQM 724 (1513)
Q Consensus 717 VFlr~~~~ 724 (1513)
||++.|.+
T Consensus 133 ~~i~Qge~ 140 (880)
T PRK02224 133 AYVRQGEV 140 (880)
T ss_pred eEeeccCh
Confidence 45555544
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=95.73 E-value=0.67 Score=63.58 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.9
Q ss_pred EEEecCCCCCCchhhHHH
Q 000434 151 SILVSGESGAGKTETTKM 168 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~ 168 (1513)
..+|+|++|||||+....
T Consensus 25 ~~~i~G~nG~GKStil~a 42 (880)
T PRK03918 25 INLIIGQNGSGKSSILEA 42 (880)
T ss_pred cEEEEcCCCCCHHHHHHH
Confidence 367999999999987653
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.70 E-value=3 Score=54.10 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000434 993 RQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 1047 (1513)
Q Consensus 993 e~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~ 1047 (1513)
..++.+++..+............+...++.++..|+....++++++.+++.+...
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~ 390 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 3333344444443333333333334444444444444443343334333333333
No 74
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.69 E-value=7.6 Score=50.37 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=7.3
Q ss_pred HHHHHHHHHHcccCC
Q 000434 611 LQLQSLMETLNSTEP 625 (1513)
Q Consensus 611 ~~l~~L~~~l~~t~~ 625 (1513)
.-+..||-.|.++=|
T Consensus 203 ~y~vkmlfkLHs~vp 217 (980)
T KOG0980|consen 203 DYLVKMLFKLHSQVP 217 (980)
T ss_pred HHHHHHHHHHHcCCC
Confidence 334455555555443
No 75
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.69 E-value=17 Score=51.52 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=16.5
Q ss_pred cCCCCCCCCCCCChhhHHHHhhccchH
Q 000434 631 VKPNNALRPAIFENANIIQQLRCGGVL 657 (1513)
Q Consensus 631 IkPN~~~~p~~fd~~~v~~QLr~~gvl 657 (1513)
|.++....+-.++...+..+++..||-
T Consensus 110 i~~~~~~~~~~~~~~e~~r~~~~~gv~ 136 (1201)
T PF12128_consen 110 IDENNGDLVQALSMWELIRELRRKGVQ 136 (1201)
T ss_pred ccccCccccccccHHHHHHHHHhCCCe
Confidence 345554455566667777777776654
No 76
>PRK09039 hypothetical protein; Validated
Probab=95.69 E-value=1.2 Score=53.72 Aligned_cols=13 Identities=0% Similarity=0.174 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 000434 1141 TTVFDRIIQTIAS 1153 (1513)
Q Consensus 1141 ~~ll~~i~~~I~~ 1153 (1513)
...+++++..|+.
T Consensus 240 ~~~L~~ia~~l~~ 252 (343)
T PRK09039 240 QAEIAKLAAALIE 252 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544443
No 77
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.61 E-value=7.5 Score=51.03 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKAC--MDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l--~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~ 1039 (1513)
.+.++++|++.++-|.++.+=+++.++.++..- ...+.++-++.+++.+++.+....+.+.++|.++..
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 355566666555555554444444444443333 222233333444444444444444443333333333
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.60 E-value=1.3 Score=53.07 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQ 1028 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq 1028 (1513)
..+++.++.++.....+++..+..+.+++.++..++...+++..+..++..++.+++
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444444443333333334444443333
No 79
>PRK03918 chromosome segregation protein; Provisional
Probab=95.54 E-value=2.6 Score=57.87 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHhhh
Q 000434 1441 SVSSEVISSMRVLM 1454 (1513)
Q Consensus 1441 ~vs~~~i~~v~~~~ 1454 (1513)
.+++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555544444
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=7.1 Score=48.61 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000434 881 ARETGALKEAKDKLEKRV 898 (1513)
Q Consensus 881 a~e~~~L~~~~~~Le~~l 898 (1513)
+.+++.++.....|.+.+
T Consensus 307 EeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 81
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.43 E-value=5.5 Score=44.09 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHh
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQR---LEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~---Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
+...++|...-+.+.-|+.++.+ |=+.+..|.+|-..|++.+.
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445544433 33455566777666776543
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.43 E-value=1 Score=51.50 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~L 1048 (1513)
+..++.+.+.........+..|+..+..|+.++...
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333344444444444444444444433
No 83
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.41 E-value=7.2 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 000434 1032 QRLEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1032 ~~Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
.+|.+++..|+.+...|+.++.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555443
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.26 E-value=7.8 Score=48.73 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 000434 745 QIRTYIARKEFIALRKAAIVL 765 (1513)
Q Consensus 745 ~~R~~l~R~~~~~~r~a~i~I 765 (1513)
..-.|+.|-+|+........+
T Consensus 50 RLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 50 RLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766554443
No 85
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.25 E-value=13 Score=47.37 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHh
Q 000434 1017 LEDTEEKVGQLQESMQR---LEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~---Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
+..+.+++..|+.++.+ |+.....||.+|..++.++.
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555544 44466678888888777654
No 86
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=17 Score=48.76 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=7.1
Q ss_pred HhhhchhHHHHHHhh
Q 000434 1362 YVKAGLAELEQWCYD 1376 (1513)
Q Consensus 1362 qIr~nls~Le~W~~~ 1376 (1513)
++.-+++.++.=+..
T Consensus 939 k~q~~l~~le~~~~~ 953 (1293)
T KOG0996|consen 939 KAQKKLSELEREIED 953 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544443
No 87
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.20 E-value=23 Score=50.06 Aligned_cols=13 Identities=8% Similarity=0.340 Sum_probs=5.7
Q ss_pred CCCchH-HHHHHHH
Q 000434 514 PKSTHE-TFAQKLY 526 (1513)
Q Consensus 514 ~~~~d~-~~~~kl~ 526 (1513)
|+|+.. ++++-+.
T Consensus 32 PNGSGKSNI~DAi~ 45 (1163)
T COG1196 32 PNGSGKSNIVDAIR 45 (1163)
T ss_pred CCCCchHHHHHHHH
Confidence 444432 3444444
No 88
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.14 E-value=4.5 Score=57.79 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.1
Q ss_pred eEEEecCCCCCCchhhHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~ 170 (1513)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998766543
No 89
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.14 E-value=2.3 Score=54.94 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.2
Q ss_pred ccCCCCCCccccc
Q 000434 1468 LDDDSSIPFTVDD 1480 (1513)
Q Consensus 1468 lD~~~~~Pf~~~~ 1480 (1513)
|-.+.++||-+-.
T Consensus 594 L~~~pcipffy~~ 606 (617)
T PF15070_consen 594 LGSNPCIPFFYRA 606 (617)
T ss_pred CCCCCcccceeec
Confidence 6677788886544
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.09 E-value=2.5 Score=50.73 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=6.0
Q ss_pred ccChHHHHHHh
Q 000434 670 RRTFYEFLHRF 680 (1513)
Q Consensus 670 r~~~~~F~~ry 680 (1513)
+++..+|++--
T Consensus 13 ~isL~~FL~~~ 23 (325)
T PF08317_consen 13 PISLQDFLNMT 23 (325)
T ss_pred CcCHHHHHHHh
Confidence 35566666533
No 91
>PTZ00014 myosin-A; Provisional
Probab=95.03 E-value=0.046 Score=72.38 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 000434 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNE 825 (1513)
Q Consensus 786 AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr~ 825 (1513)
.+..||++||+|++|++|++.+.+++.||+.+|+++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666666667777777666543
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.02 E-value=0.96 Score=57.97 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1012 ~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
....+++.+..++..+..++..-++...+|+.+++.+.+
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455555555555555555555555555555554443
No 93
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.00 E-value=10 Score=44.89 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 925 KLQDALQAMQLQVEEANFRILKEQEAARKAIEE 957 (1513)
Q Consensus 925 ~L~~~~eeLe~~lee~~~~l~~e~e~l~~~~ee 957 (1513)
.++++.+.+-..+.+...+|..++.-+++.+.+
T Consensus 194 tlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 194 TLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444555666666666644
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=4.3 Score=46.35 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le 1042 (1513)
++..++....+...++..-..+++++..+..-..+.+.....+..+..+.+..+..+..+...+..+...++
T Consensus 146 Dk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 146 DKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444555555555544444444444444444444444444444444444444444444444444444444
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.91 E-value=4.9 Score=51.73 Aligned_cols=80 Identities=8% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN--TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 973 ~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~--~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
.++..++.+.+.+..++..-++.+.+|..++..+.+.. ..-..++-+.-..+..-++++.+.-.....++.+...+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666665554331 2223333344444444444444444444444444444443
Q ss_pred HH
Q 000434 1051 QA 1052 (1513)
Q Consensus 1051 ~~ 1052 (1513)
++
T Consensus 527 kL 528 (594)
T PF05667_consen 527 KL 528 (594)
T ss_pred HH
Confidence 33
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.89 E-value=12 Score=53.75 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhccCCCcccch
Q 000434 1145 DRIIQTIASAIEVQDNNDVLAY 1166 (1513)
Q Consensus 1145 ~~i~~~I~~~v~~~~d~~~lay 1166 (1513)
++++.-++..+-...+.+.+.+
T Consensus 1143 n~~~~~~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1143 NKIIRDLWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHHHHHHHcCccHHHHhhc
Confidence 4444444444434444444444
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.82 E-value=7.4 Score=45.29 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred hHhHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHH
Q 000434 1005 DAEVRNTELVKKLEDTEE-KVGQLQESMQRLEEKLCNSESENQV 1047 (1513)
Q Consensus 1005 ~~e~~~~~l~~~l~~le~-ei~~Lq~e~~~Lee~i~~Le~en~~ 1047 (1513)
.+..+.-.+...|+..++ -++.|++.+..|+.+...|+..+..
T Consensus 160 ~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 160 RLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333344444544433 3556788888888777777776443
No 98
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.78 E-value=30 Score=49.13 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=6.9
Q ss_pred CCCcc-cChHHHHHHhh
Q 000434 666 GYPTR-RTFYEFLHRFG 681 (1513)
Q Consensus 666 Gyp~r-~~~~~F~~ry~ 681 (1513)
|.|.+ ..+.+++..++
T Consensus 116 ~~~~~~~~~~~~l~~~~ 132 (1179)
T TIGR02168 116 GQPCRLKDIQDLFLDTG 132 (1179)
T ss_pred CCcccHHHHHHHHhccC
Confidence 44443 22344554444
No 99
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.78 E-value=21 Score=48.26 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=5.5
Q ss_pred ccchHHHHHHH
Q 000434 567 DYVVAEHQVLL 577 (1513)
Q Consensus 567 d~~~~~~~~ll 577 (1513)
|.++|+++..+
T Consensus 241 DYISPEvLqs~ 251 (1317)
T KOG0612|consen 241 DYISPEVLQSQ 251 (1317)
T ss_pred CccCHHHHHhh
Confidence 45555554443
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.75 E-value=15 Score=47.84 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=6.5
Q ss_pred hHHHHHHHHhcc
Q 000434 1391 HIRQAVGFLVIN 1402 (1513)
Q Consensus 1391 ~l~Qa~~lLq~~ 1402 (1513)
.++.|++-++..
T Consensus 851 vLVeaAdkvV~~ 862 (980)
T KOG0980|consen 851 VLVEAADKVVTG 862 (980)
T ss_pred HHHHHhhhHhcC
Confidence 455566655543
No 101
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.70 E-value=12 Score=44.13 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 974 KIESLTAEVDSLKALLLSERQSAEEARKAC-------MDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1513)
Q Consensus 974 ~~~~L~~e~~~l~~el~~le~~~~~le~~l-------~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee 1036 (1513)
.++..++|....+........++......+ ..-.+...+...+++.+|.+...|+.++.+|+.
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444444444444433333 333333444444555555555555555555554
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.64 E-value=6.8 Score=43.17 Aligned_cols=68 Identities=28% Similarity=0.309 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000434 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1513)
Q Consensus 975 ~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~----~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le 1042 (1513)
.++|..++..++..+++.+.++..+++++.-.... ......+..++..++..|+.++..|..++.+-+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555566555554433222 222333444555555555555555555555433
No 103
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.59 E-value=6.6 Score=45.19 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 1010 ~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
.+.+..+++.++..-..|.++++.|.+-+.++|...+-++
T Consensus 254 re~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 254 REFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 3344444445555555566666666666666666554443
No 104
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.50 E-value=4.6 Score=41.72 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000434 1019 DTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1513)
Q Consensus 1019 ~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~~ 1054 (1513)
.++.+...|+.++..++.++.+|..+|..|-.++..
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666667777777778888888888777666543
No 105
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.49 E-value=2.5 Score=57.30 Aligned_cols=140 Identities=23% Similarity=0.269 Sum_probs=96.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhHHHh-
Q 000434 740 RIIQRQIRTYIARKEFIALRKAA-------IVLQSYWRGILACKLYEQLRRE-----AAALKIQKNFHSYTARTSYLTA- 806 (1513)
Q Consensus 740 ~~IQ~~~R~~l~R~~~~~~r~a~-------i~IQ~~~Rg~laRk~~~~~r~~-----~AA~~IQ~~~R~~~~Rr~y~~~- 806 (1513)
..||+.-+.+..++++...+..+ ...++.++|++.++...+.... ..-+-.|...|+...+..--.+
T Consensus 451 ~~mq~~~~~~~~~kK~~s~~~~iNk~k~s~~k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~ 530 (1401)
T KOG2128|consen 451 PMMQKFNVDYVEAKKVASLNVKINKAKGSEMKWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLY 530 (1401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHh
Confidence 45666666666666555544333 4779999999999887766532 2224478888888777642222
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 807 ----RSSAIQLQTGLRAMVARNEFRFRK-----QTKAAIIIEAYLRRHTA----CSYYKSLKKAAVITQCGWRRRVARRE 873 (1513)
Q Consensus 807 ----r~a~i~IQs~~Rg~laRr~~~~l~-----~~~aAv~IQ~~~R~~~~----r~~~~~~~~a~~~iQ~~~R~~~arre 873 (1513)
.....++|+..||+..|.+++... +......||+.||+++. ...+....+.++.+|++.|+.++|+.
T Consensus 531 ~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 531 PSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 223445599999999998876532 34567789999999983 33445557889999999999999988
Q ss_pred HHHHHH
Q 000434 874 LRNLKM 879 (1513)
Q Consensus 874 l~~Lk~ 879 (1513)
+.+..+
T Consensus 611 ~~~~~q 616 (1401)
T KOG2128|consen 611 YSRKLQ 616 (1401)
T ss_pred HHHHHH
Confidence 775443
No 106
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.43 E-value=0.96 Score=54.66 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
...+++.+|..++.++++++....-+..++..........-+.++.+...+++...+......+-+++++.++.
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444555555555555554443333333322222222222334444444444444444455555555555543
No 107
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.41 E-value=0.042 Score=39.59 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHhH
Q 000434 785 AAALKIQKNFHSYTARTSY 803 (1513)
Q Consensus 785 ~AA~~IQ~~~R~~~~Rr~y 803 (1513)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666677777777666666
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.22 E-value=9.8 Score=41.17 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACM 1004 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~ 1004 (1513)
...++.|+.++.++..+.+.+.++..++-.+..
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~ 133 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKA 133 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhH
Confidence 445566666666666666666655555544333
No 109
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.17 E-value=41 Score=48.21 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 975 IESLTAEVDSLKALLLSERQSAEEARK 1001 (1513)
Q Consensus 975 ~~~L~~e~~~l~~el~~le~~~~~le~ 1001 (1513)
+++++.+...++.++..++..++.+++
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 110
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=9.6 Score=49.00 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 975 ~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
.++++.+...++.+.+.+-.+..+....+..+......+..+....+.++..|+++.+.....++++-+....+..
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~ 883 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEA 883 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence 3344444444444444444444444444444433333344555566666666666666555555555555544443
No 111
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.10 E-value=0.036 Score=55.94 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 112
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.09 E-value=0.059 Score=38.83 Aligned_cols=20 Identities=55% Similarity=0.943 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000434 759 RKAAIVLQSYWRGILACKLY 778 (1513)
Q Consensus 759 r~a~i~IQ~~~Rg~laRk~~ 778 (1513)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888776
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.02 E-value=0.3 Score=53.90 Aligned_cols=74 Identities=24% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 978 L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
++.+.......+..++..+..++.++..++....+..+.++.+.+++..|+-+...+++++..++.||..|-+.
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444445555566677777777777777888888888888776553
No 114
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.02 E-value=43 Score=47.86 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIE 956 (1513)
Q Consensus 887 L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~eeLe~~lee~~~~l~~e~e~l~~~~e 956 (1513)
|......+..+...++..+...+.....++.........+...+.+|+..+..++..++++...++....
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~ 833 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTN 833 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433333333333333344455556666666666655555554444444333
No 115
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.98 E-value=6 Score=46.92 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.1
Q ss_pred ccChHHHHH
Q 000434 670 RRTFYEFLH 678 (1513)
Q Consensus 670 r~~~~~F~~ 678 (1513)
+++..+|++
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 455556655
No 116
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.98 E-value=12 Score=47.67 Aligned_cols=38 Identities=37% Similarity=0.321 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE 918 (1513)
Q Consensus 881 a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~ 918 (1513)
+.+.+.+.........+.++++..+.-++..+..+++.
T Consensus 100 a~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~ 137 (739)
T PF07111_consen 100 AEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEG 137 (739)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHH
Confidence 33444443333333333444444444333333333333
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.93 E-value=23 Score=48.00 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000434 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEE--KVGQLQESMQRLEEKLCNSESENQVI 1048 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~--ei~~Lq~e~~~Lee~i~~Le~en~~L 1048 (1513)
++..+...++.++..++....+...++..++.......+...+.+. .-..+..+++.++.+++++..|++.+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554444444333322223333333333 33334555555555666666665555
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.90 E-value=2 Score=49.88 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000434 982 VDSLKALLLSERQSAE 997 (1513)
Q Consensus 982 ~~~l~~el~~le~~~~ 997 (1513)
+..|..++.+++.+++
T Consensus 236 It~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.88 E-value=14 Score=48.88 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 982 VDSLKALLLSERQSAEEARKACMDA--EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 982 ~~~l~~el~~le~~~~~le~~l~~~--e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
...+..++..++.+++++++++... ++...++.+++++++.++..++.++..++.++..++.+...++.+
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555432 233445555555555555555555555555555555555444443
No 120
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.76 E-value=13 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000434 883 ETGALKEAKDKLEKRVEELTW 903 (1513)
Q Consensus 883 e~~~L~~~~~~Le~~l~el~~ 903 (1513)
.+..|..++.+|+.++..++.
T Consensus 57 kVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555543
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.69 E-value=4.9 Score=53.01 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.3
Q ss_pred cccCCeeEeecCCCCCCCCCC
Q 000434 621 NSTEPHYIRCVKPNNALRPAI 641 (1513)
Q Consensus 621 ~~t~~hfirCIkPN~~~~p~~ 641 (1513)
..|..+||.|=+|.....|.-
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977765543
No 122
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=35 Score=45.67 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 000434 785 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1513)
Q Consensus 785 ~AA~~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~laRr 824 (1513)
.++..-|..|..|.....-...-..+...++..+....+.
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM 250 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh
Confidence 4566777777777666555555444445555544444433
No 123
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.64 E-value=28 Score=44.49 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=14.8
Q ss_pred HhhCCCCCHHHHH-------HHHhcCcCCCCC
Q 000434 1414 KELCPVLSIQQLY-------RISTMYWDDKYG 1438 (1513)
Q Consensus 1414 ~~~c~~Ls~~Ql~-------kIL~~Y~~d~~e 1438 (1513)
.+.|.+|-.-+|. +|-+.|.+.+++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 3567777777764 445566654443
No 124
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.64 E-value=4.6 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 882 RETGALKEAKDKLEKRVEELTWRLQ 906 (1513)
Q Consensus 882 ~e~~~L~~~~~~Le~~l~el~~~l~ 906 (1513)
-.+..|+..+.-|++++++|+.+..
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhh
Confidence 3445556666666666666665544
No 125
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.63 E-value=18 Score=42.06 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le 1042 (1513)
+.++..++..++.++.+++..+..|.
T Consensus 223 ~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 223 IDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.62 E-value=14 Score=43.20 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 000434 924 AKLQDALQAMQL 935 (1513)
Q Consensus 924 ~~L~~~~eeLe~ 935 (1513)
..|++.+..|+.
T Consensus 163 e~Lq~Klk~LEe 174 (306)
T PF04849_consen 163 EALQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.59 E-value=27 Score=44.11 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHH
Q 000434 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC------NSESENQV 1047 (1513)
Q Consensus 974 ~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~------~Le~en~~ 1047 (1513)
.+...+.++..|-.+++.++....++. +.....+..++.++......++++++++. +...|+..
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~----------e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsi 355 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEER----------EKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSI 355 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 333445555555555544444433322 22333444555555555555555555444 34445555
Q ss_pred HHH
Q 000434 1048 IRQ 1050 (1513)
Q Consensus 1048 Lkq 1050 (1513)
|++
T Consensus 356 Lk~ 358 (629)
T KOG0963|consen 356 LKA 358 (629)
T ss_pred HHH
Confidence 554
No 128
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=8.2 Score=47.28 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000434 890 AKDKLEKRVEELTWRLQFEK 909 (1513)
Q Consensus 890 ~~~~Le~~l~el~~~l~~e~ 909 (1513)
.+..|+.++++++...+..+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R 63 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLAR 63 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444433
No 129
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.42 E-value=0.47 Score=56.32 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=73.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc-cCcccccchhHhhhchhHHHHHHhhccc
Q 000434 1301 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEYVKAGLAELEQWCYDATE 1379 (1513)
Q Consensus 1301 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1379 (1513)
+...+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. .+..|-.--.++...|.++|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567889999999988544 4679999999999999999999999998753 3455555567899999999999998710
Q ss_pred --ccccchHHHhhhHHHHHHHHhccCCCccCHH-HHHHhhCCCCCHHHHHHHHhcCc
Q 000434 1380 --EYAGSAWDELKHIRQAVGFLVINQKPKKTLN-EITKELCPVLSIQQLYRISTMYW 1433 (1513)
Q Consensus 1380 --~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~-~i~~~~c~~Ls~~Ql~kIL~~Y~ 1433 (1513)
.-.+.....|..++|.++||....-..- .+ .+...-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y-~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEY-LDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH----------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHH-hCccccccccCCCCHHHHHHHHHhcC
Confidence 1245667899999999999997532222 22 45445588999999999988774
No 130
>PRK01156 chromosome segregation protein; Provisional
Probab=93.38 E-value=45 Score=45.99 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
+++...++..+.+++..++.++.+++.....++.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666555554
No 131
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.33 E-value=11 Score=44.87 Aligned_cols=6 Identities=33% Similarity=1.160 Sum_probs=3.0
Q ss_pred hHHHHH
Q 000434 864 GWRRRV 869 (1513)
Q Consensus 864 ~~R~~~ 869 (1513)
.||..+
T Consensus 136 eWR~kl 141 (312)
T smart00787 136 EWRMKL 141 (312)
T ss_pred HHHHHH
Confidence 355554
No 132
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.25 E-value=16 Score=40.37 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 982 VDSLKALLLSERQSAEEARKACMDAEVRN----TELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 982 ~~~l~~el~~le~~~~~le~~l~~~e~~~----~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
+++|...+..++.++++.++++..++... .....++..+..+...++.++..+..++..|..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544432 123333334444444444444444444444433
No 133
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=36 Score=44.26 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q 000434 980 AEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAM 1055 (1513)
Q Consensus 980 ~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~~~ 1055 (1513)
++...+...++.......+..+.+..++...++...++++++..+..+..+++.+..+...+++++..|+.++...
T Consensus 545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444555555555556667777777777788888888888888888999999999888654
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=28 Score=42.97 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQ 1032 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~ 1032 (1513)
+..++..+++++.-|..+++
T Consensus 199 lkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 199 LKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.17 E-value=14 Score=41.12 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTEL 1013 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l 1013 (1513)
.+..+..++++...++-+.+.++.+...++.+..++.......
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666677666677777776666666665544433
No 136
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.00 E-value=24 Score=41.73 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000434 920 AQEIAKLQDALQAMQLQVEEAN 941 (1513)
Q Consensus 920 ~~e~~~L~~~~eeLe~~lee~~ 941 (1513)
......|+.+++.|...+.++.
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555544443
No 137
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=22 Score=42.92 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.9
Q ss_pred hhcCCCcccChHHHH
Q 000434 663 SCAGYPTRRTFYEFL 677 (1513)
Q Consensus 663 ~~~Gyp~r~~~~~F~ 677 (1513)
...|||.-+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 456888888887664
No 138
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.86 E-value=15 Score=48.62 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHH-HHHhcCCCHHHHHH
Q 000434 1304 HWQSIVKSLNSYLK-TMKVNYVPPFLVRK 1331 (1513)
Q Consensus 1304 ~~~~il~~L~~~~~-~L~~~~v~~~l~~Q 1331 (1513)
+++.+-+-+..=.+ .++..+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 34444433333333 56666777775554
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.82 E-value=40 Score=43.87 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 1012 ~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
++..++.+++.++..+.+.++.-..++..|..
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444444444433333333333333
No 140
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.73 E-value=0.075 Score=54.27 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999987754
No 141
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=17 Score=47.74 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000434 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1513)
Q Consensus 1010 ~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~~ 1054 (1513)
.-.+.+++.++..+...|..+-..|+..+..++++...-.+.+.+
T Consensus 455 ~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 455 NTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777777777777778888887777777665555443
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.31 E-value=42 Score=42.85 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000434 847 ACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKA---QEI 923 (1513)
Q Consensus 847 ~r~~~~~~~~a~~~iQ~~~R~~~arrel~~Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k~---~e~ 923 (1513)
....+.+.......-...+-+.+.-++ ....+-+..+..........-.++.++...+..++-...+|...-. .+.
T Consensus 423 ekk~~eki~E~lq~~eqel~~llq~~e-kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEk 501 (786)
T PF05483_consen 423 EKKQFEKIAEELQGTEQELTGLLQIRE-KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEK 501 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 924 AKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKAC 1003 (1513)
Q Consensus 924 ~~L~~~~eeLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l 1003 (1513)
..+..+...+-.++..+...+..-+..-.+...+.+..... .....++|+.-+..++..-++.+..++.-+...
T Consensus 502 k~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~------~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~ 575 (786)
T PF05483_consen 502 KQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEET------NTQLRNELESVKEELKQKGEEVKCKLDKSEENA 575 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q ss_pred hhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000434 1004 MDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1513)
Q Consensus 1004 ~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~~ 1054 (1513)
+..+-+.....+.+.-++.++..|..+++.-.+-+.+|+.+|..|+.+...
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 143
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.29 E-value=0.092 Score=53.23 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 144
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.15 E-value=0.1 Score=56.67 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.5
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999988888754
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.02 E-value=21 Score=39.73 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHh
Q 000434 984 SLKALLLSERQSAEEARKACMDAEVR 1009 (1513)
Q Consensus 984 ~l~~el~~le~~~~~le~~l~~~e~~ 1009 (1513)
.++.++..++-+.+.++..+..++.+
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 146
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.91 E-value=0.11 Score=56.43 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999998877653
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.90 E-value=1.7 Score=48.29 Aligned_cols=78 Identities=9% Similarity=0.104 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
...++..+++|++++++++.++....++.. .++++......+.+.+++++..+|.+++..++.++..++.++..++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRT---AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777666665544322 23333334444455567777777777777777777777777777665
Q ss_pred H
Q 000434 1051 Q 1051 (1513)
Q Consensus 1051 ~ 1051 (1513)
+
T Consensus 168 ~ 168 (206)
T PRK10884 168 T 168 (206)
T ss_pred H
Confidence 4
No 148
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.90 E-value=0.13 Score=46.62 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 149
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.78 E-value=32 Score=45.67 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhh
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~ 1010 (1513)
...+.+|.+++...+.++..+..+++..+++...++=+.
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655554443
No 150
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.78 E-value=9 Score=46.76 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=3.4
Q ss_pred HHhcCCCH
Q 000434 1319 MKVNYVPP 1326 (1513)
Q Consensus 1319 L~~~~v~~ 1326 (1513)
++.-++|+
T Consensus 508 c~R~~~de 515 (596)
T KOG4360|consen 508 CRRMISDE 515 (596)
T ss_pred HHhhcCch
Confidence 34444444
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.63 E-value=3.2 Score=46.61 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
....+.-++.++......++.|+.+++.++.++++..+.+.
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445556666666666777777777777777776655543
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.61 E-value=5.8 Score=43.63 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
....++.+.....+++.+...+.+++.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 156 SREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555544444443
No 153
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.60 E-value=0.21 Score=51.15 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.3
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998875
No 154
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.60 E-value=0.17 Score=58.74 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999887764
No 155
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.47 E-value=31 Score=39.58 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 1018 ~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
.....++....+.++++++++..|+.+.+.|..+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555566666666666666666666666544
No 156
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.45 E-value=54 Score=42.32 Aligned_cols=52 Identities=19% Similarity=0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 990 LSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1513)
Q Consensus 990 ~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~L 1041 (1513)
+.+.+++.++|++...+......+++.++..+.++..|.....++++++.++
T Consensus 347 egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 347 EGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444455555555555444555444443
No 157
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.43 E-value=9.6 Score=45.55 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED 1019 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~ 1019 (1513)
.+.+++.|+.++..+...+..+...++++..+.+.+....+.+..++..
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666555555444444444433333
No 158
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.32 E-value=0.23 Score=61.07 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 131 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.++.+.-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 3445555677777777889999999999999999988776643
No 159
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.31 E-value=57 Score=42.35 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee 1036 (1513)
..+.|..+++-++++...+.+.++-+++..++++.-+.-.|..-..++.+|++-..-|+.
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555444444444444444444443333333
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.29 E-value=16 Score=41.40 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1023 KVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1023 ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
+...|++...+--++.+.||.+...|..+
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 34445555555455556667776666643
No 161
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.28 E-value=68 Score=43.21 Aligned_cols=56 Identities=29% Similarity=0.418 Sum_probs=34.3
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCchhHHHHHHHHhccCccccccC-CeEEEecCCCCCCCCCCHHHHHHhh
Q 000434 52 VFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTG-NILIAINPFQRLPHLYDTHMMEQYK 121 (1513)
Q Consensus 52 ~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G-~iLiavNP~~~l~~ly~~~~~~~y~ 121 (1513)
-+|.-+..++...+|..-- .||..-.+-| -| -|+=++-|--.+++-|++++...-+
T Consensus 173 sFPGv~~~~~kk~~DviCt-------------SrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 173 TFPGVPTGPPKKWDDVICT-------------SRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred CCCCCCCCCcccccceeee-------------cccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 3444444455556665432 4565555533 34 3566778888888899998876554
No 162
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.23 E-value=16 Score=38.05 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000434 977 SLTAEVDSLKALLLSER 993 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le 993 (1513)
.+..++..+..++..+.
T Consensus 63 ~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 63 ELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 163
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.20 E-value=0.3 Score=50.34 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
..+..|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988876
No 164
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.20 E-value=0.32 Score=55.28 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000434 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1513)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1513)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999876544
No 165
>PTZ00121 MAEBL; Provisional
Probab=91.10 E-value=80 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.1
Q ss_pred CcccCCCCCCchhHHHHHHHHhccCccccccCC
Q 000434 65 DDMTKLSYLHEPGVLHNLAARYELNEIYTYTGN 97 (1513)
Q Consensus 65 ~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~ 97 (1513)
=|||.=...++..|+.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 378777777887777777777777788888774
No 166
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.10 E-value=26 Score=38.01 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000434 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1513)
Q Consensus 1012 ~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~ 1046 (1513)
.+..+|.+.+..-......+..|++.+.+|+..+.
T Consensus 148 ~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 148 ELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 33444444444444444444444444444444433
No 167
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.09 E-value=26 Score=38.01 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 000434 994 QSAEEARKAC 1003 (1513)
Q Consensus 994 ~~~~~le~~l 1003 (1513)
..+..+..++
T Consensus 144 ~~ik~ltdKL 153 (205)
T KOG1003|consen 144 EELKELTDKL 153 (205)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 168
>PRK06696 uridine kinase; Validated
Probab=91.08 E-value=0.27 Score=55.66 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+|+..+.. ..+..--|.|+|.||||||+.|+.+.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555442 3556789999999999999999999998854
No 169
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.99 E-value=19 Score=43.60 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=5.5
Q ss_pred cchHHHHHHH
Q 000434 604 SIGSRFKLQL 613 (1513)
Q Consensus 604 tv~~~f~~~l 613 (1513)
++...|+.|+
T Consensus 79 ~~s~~~i~q~ 88 (622)
T COG5185 79 SVSRLSINQL 88 (622)
T ss_pred hhhHHHHHhh
Confidence 4555566555
No 170
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=18 Score=43.59 Aligned_cols=79 Identities=9% Similarity=0.215 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 973 ~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~--~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
.++++++.+...+-++++.-++....+..++..+-.. .....+++.+.-.-+.....++.+.-++..+|+.+...+..
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444443333333343333333221 12233344444444444444444444444444444444433
Q ss_pred H
Q 000434 1051 Q 1051 (1513)
Q Consensus 1051 ~ 1051 (1513)
+
T Consensus 425 ~ 425 (521)
T KOG1937|consen 425 A 425 (521)
T ss_pred H
Confidence 3
No 171
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.87 E-value=0.14 Score=59.58 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999999884
No 172
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.83 E-value=48 Score=40.61 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000434 1025 GQLQESMQRLE 1035 (1513)
Q Consensus 1025 ~~Lq~e~~~Le 1035 (1513)
..|...+.+++
T Consensus 234 ~~L~~~Ias~e 244 (420)
T COG4942 234 SRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 173
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.79 E-value=0.19 Score=49.67 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~ 170 (1513)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999876
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.74 E-value=24 Score=43.79 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 979 TAEVDSLKALLLSERQSAEEARKAC 1003 (1513)
Q Consensus 979 ~~e~~~l~~el~~le~~~~~le~~l 1003 (1513)
+.+...++.++.+++..+.+++.++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433333
No 175
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.70 E-value=0.2 Score=55.93 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.--|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998877
No 176
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.70 E-value=0.19 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877764
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.61 E-value=0.17 Score=51.53 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1513)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 178
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.55 E-value=0.17 Score=54.41 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+..-|||||.||+|||+..|.++.-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34579999999999999999988765
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.50 E-value=0.18 Score=55.98 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 180
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.46 E-value=0.27 Score=58.46 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
...+.+.+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998854
No 181
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.45 E-value=0.18 Score=56.11 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999988875
No 182
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.43 E-value=12 Score=47.45 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=13.5
Q ss_pred cCcccccchhHhhhchhHHHHHHhhccc
Q 000434 1352 RECCSFSNGEYVKAGLAELEQWCYDATE 1379 (1513)
Q Consensus 1352 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1379 (1513)
+|..-|+|- ++-.|+++.|.
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 456678875 45568888873
No 183
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.37 E-value=0.28 Score=51.89 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998764
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.32 E-value=32 Score=45.70 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=26.6
Q ss_pred CCCCeEEEccCcceeeechhhhhh-----ccccchHHHHHHHhhcCchhhhccCCCC
Q 000434 541 SRTSFTISHYAGEVTYLADLFLDK-----NKDYVVAEHQVLLTASKCPFVSGLFPPL 592 (1513)
Q Consensus 541 ~~~~F~i~Hyag~V~Y~~~gflek-----N~d~~~~~~~~ll~~S~~~~v~~lf~~~ 592 (1513)
.+..|-+.|-+|--.=.. .|+.+ +.|.-..|-+..+...+...|..++...
T Consensus 377 ~~~ryy~~H~~GvH~V~L-~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~ 432 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL-PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTK 432 (717)
T ss_pred CCceEEEEecCccEEEEe-ccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccC
Confidence 457899999999733333 36552 2222222333334444445666666543
No 185
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.20 E-value=67 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 000434 985 LKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 1053 (1513)
Q Consensus 985 l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~ 1053 (1513)
...+++.....+.....+...+......+..+|.....++..+++........+..|+.+....+..+.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 333333344444444444444444444455555555555555555555555556666666666666554
No 186
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=90.17 E-value=32 Score=41.24 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCC---Cceeccchhhhchhh
Q 000434 696 VACEKILDKMGLK---GYQIGKTKVFLRAGQ 723 (1513)
Q Consensus 696 ~~~~~il~~~~~~---~~~iGkTkVFlr~~~ 723 (1513)
++++.|-..++-+ +.-+--+-=|+|+..
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 4445555555432 355555666777653
No 187
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.14 E-value=0.31 Score=56.64 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=26.2
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+..+.... .-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34444322 34799999999999999999998874
No 188
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.12 E-value=0.2 Score=55.48 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999988877
No 189
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.01 E-value=32 Score=37.38 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le 1042 (1513)
.....+.+..++..+..++.++..++
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 190
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.95 E-value=0.2 Score=55.28 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 191
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.80 E-value=38 Score=37.91 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKA-----LLLSERQSAEEARKACMDAEVRNTELVKKLEDTEE-------KVGQLQESMQRLEEKL 1038 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~-----el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~-------ei~~Lq~e~~~Lee~i 1038 (1513)
+..+...|..|++++-. .+.+|+.+++--+....+++...+++-.-+.++.+ .+--|++++++-+++|
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 34555566666665533 34444444443333333333333333333333444 4444555555555555
Q ss_pred HhhHHHHHHHHH
Q 000434 1039 CNSESENQVIRQ 1050 (1513)
Q Consensus 1039 ~~Le~en~~Lkq 1050 (1513)
..|+..++.+.+
T Consensus 295 q~l~k~~~q~sq 306 (330)
T KOG2991|consen 295 QRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 192
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.79 E-value=21 Score=46.10 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=16.4
Q ss_pred ceeeechhhhhhccccchHHHHHHHhhc
Q 000434 553 EVTYLADLFLDKNKDYVVAEHQVLLTAS 580 (1513)
Q Consensus 553 ~V~Y~~~gflekN~d~~~~~~~~ll~~S 580 (1513)
.|.|.-..|+-+|-|-=..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4777777777777765444344444443
No 193
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.70 E-value=30 Score=38.89 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=19.0
Q ss_pred cchHHHHHhh----hcCCCcccChHHHHHHhh
Q 000434 654 GGVLEAIRIS----CAGYPTRRTFYEFLHRFG 681 (1513)
Q Consensus 654 ~gvle~iri~----~~Gyp~r~~~~~F~~ry~ 681 (1513)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3455555554 346999999999987655
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.70 E-value=47 Score=38.76 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 973 EKIESLTAEVDSLKALLLSERQSAEEARKAC 1003 (1513)
Q Consensus 973 ~~~~~L~~e~~~l~~el~~le~~~~~le~~l 1003 (1513)
..+..+++|+..++.+++++..++.+.+++.
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 3344444445445544444444444443333
No 195
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.65 E-value=0.27 Score=54.87 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.+...|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999998887664
No 196
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.38 E-value=0.45 Score=57.26 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=35.4
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 117 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
..+|+-....++-.|-..+ .........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556544444433332222 1223333445545799999999999999999999875
No 197
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.35 E-value=0.61 Score=57.27 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000434 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
++.+.-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34455556666666788999999999999999998887753
No 198
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.20 E-value=31 Score=45.31 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=4.1
Q ss_pred HHhhhHHHHH
Q 000434 1387 DELKHIRQAV 1396 (1513)
Q Consensus 1387 ~~L~~l~Qa~ 1396 (1513)
+.+.|+..||
T Consensus 552 dQikhL~~av 561 (717)
T PF09730_consen 552 DQIKHLQRAV 561 (717)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 199
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.20 E-value=30 Score=44.23 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000434 971 DTEKIESLTAEVDSLKA 987 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~ 987 (1513)
...++.+++.++..+..
T Consensus 252 l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 252 LDGRIEALEKQLDALRL 268 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555566655555543
No 200
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.18 E-value=2.4 Score=50.41 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=4.3
Q ss_pred hHHHHHHHH
Q 000434 1304 HWQSIVKSL 1312 (1513)
Q Consensus 1304 ~~~~il~~L 1312 (1513)
.|..-+++|
T Consensus 289 ~WT~AlK~l 297 (314)
T PF04111_consen 289 EWTKALKYL 297 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 201
>PRK06547 hypothetical protein; Provisional
Probab=89.18 E-value=0.51 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.6
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 146 EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.....-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999888764
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=48 Score=38.15 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000434 922 EIAKLQDALQAMQLQVEEAN 941 (1513)
Q Consensus 922 e~~~L~~~~eeLe~~lee~~ 941 (1513)
+++++++++++++..+.+.+
T Consensus 81 eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 81 EIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.16 E-value=0.28 Score=53.21 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999998864
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.11 E-value=0.25 Score=50.13 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999988877653
No 205
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.08 E-value=76 Score=40.37 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000434 976 ESLTAEVDSL 985 (1513)
Q Consensus 976 ~~L~~e~~~l 985 (1513)
..++.++..|
T Consensus 252 ~~lE~e~e~L 261 (629)
T KOG0963|consen 252 VFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 206
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.07 E-value=0.25 Score=53.02 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 207
>PRK08233 hypothetical protein; Provisional
Probab=89.05 E-value=0.23 Score=53.88 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
..-|.|+|.||||||+.++.+..+|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999988874
No 208
>PTZ00301 uridine kinase; Provisional
Probab=89.04 E-value=0.28 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1513)
-|-|+|-||||||+.|+.|.+.|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 377999999999999998887664
No 209
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.00 E-value=0.29 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 210
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.97 E-value=23 Score=43.96 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 973 EKIESLTAEVDSLKALLLSERQSAEEARKACM 1004 (1513)
Q Consensus 973 ~~~~~L~~e~~~l~~el~~le~~~~~le~~l~ 1004 (1513)
....+++.+...++.++..++..+++++.++.
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.96 E-value=0.55 Score=52.98 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988753
No 212
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.96 E-value=43 Score=37.33 Aligned_cols=14 Identities=50% Similarity=0.548 Sum_probs=5.0
Q ss_pred HHHHHHHHhhHHHH
Q 000434 1032 QRLEEKLCNSESEN 1045 (1513)
Q Consensus 1032 ~~Lee~i~~Le~en 1045 (1513)
..|++.+..-..+|
T Consensus 178 ~SLe~~LeQK~kEn 191 (207)
T PF05010_consen 178 QSLEESLEQKTKEN 191 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 213
>PRK06762 hypothetical protein; Provisional
Probab=88.95 E-value=0.34 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 214
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.87 E-value=0.43 Score=56.98 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=35.1
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 117 MEQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.++|+-+...++- +|+-+ ...... ..+.+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3566655555553 34422 333333 33446778889999999999999998876
No 215
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.76 E-value=63 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 1018 EDTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 1018 ~~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
.+++.++..|......|+++..+|..
T Consensus 406 ~eleqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 406 IELEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHHHhccccchhhhhhhhhhh
Confidence 34444444444444444443333333
No 216
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.72 E-value=1e+02 Score=41.29 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHc
Q 000434 607 SRFKLQLQSLMETLN 621 (1513)
Q Consensus 607 ~~f~~~l~~L~~~l~ 621 (1513)
..+-.++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345667777777774
No 217
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.67 E-value=0.31 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 218
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.65 E-value=0.26 Score=55.40 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000434 151 SILVSGESGAGKTETTKML 169 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~ 169 (1513)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987754
No 219
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.60 E-value=0.3 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888753
No 220
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.59 E-value=0.36 Score=52.17 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1513)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 221
>PRK07261 topology modulation protein; Provisional
Probab=88.58 E-value=0.32 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
No 222
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.54 E-value=61 Score=38.58 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=11.0
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 000434 745 QIRTYIARKEFIALRKAA 762 (1513)
Q Consensus 745 ~~R~~l~R~~~~~~r~a~ 762 (1513)
.+-+|+.|-+++......
T Consensus 12 Rla~YIekVr~LE~~N~~ 29 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKR 29 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445677777776655543
No 223
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.45 E-value=0.36 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 224
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.31 E-value=0.3 Score=56.30 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000434 150 NSILVSGESGAGKTETTKML 169 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1513)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987654
No 225
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=88.28 E-value=57 Score=37.93 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
..+.+++...+...|..+++++++.-+.+++|+..|++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777788888888888888888888888888763
No 226
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.27 E-value=1.1e+02 Score=41.01 Aligned_cols=18 Identities=17% Similarity=-0.112 Sum_probs=9.7
Q ss_pred CCCCCHHHHHHHHhcCcC
Q 000434 1417 CPVLSIQQLYRISTMYWD 1434 (1513)
Q Consensus 1417 c~~Ls~~Ql~kIL~~Y~~ 1434 (1513)
|..=|..-|...|.+=++
T Consensus 998 ~s~~sI~eLi~vLdqrK~ 1015 (1200)
T KOG0964|consen 998 RSKDSILELITVLDQRKY 1015 (1200)
T ss_pred cchhHHHHHHHHHHHhhH
Confidence 555555555555555444
No 227
>PRK08118 topology modulation protein; Reviewed
Probab=88.22 E-value=0.36 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.0
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+-|+|.|.+|||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999888763
No 228
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.12 E-value=0.32 Score=53.36 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...|+|+|++|||||++.+.++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999988776
No 229
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.09 E-value=4.6 Score=48.06 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000434 977 SLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le~~~~~le~~l~~~ 1006 (1513)
.+++|.+.+.+++..++.+.+++.+++..+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444333333333333
No 230
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=60 Score=40.35 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE 918 (1513)
Q Consensus 882 ~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~ 918 (1513)
++++..++....|..++..++..+.+.+....++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeh 367 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEH 367 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777776666555544444444443
No 231
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.96 E-value=0.41 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+..|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998877
No 232
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.92 E-value=0.33 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.--|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999988754
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.75 E-value=0.37 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 234
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.74 E-value=0.32 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.|+|+|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999886543
No 235
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.70 E-value=0.7 Score=54.68 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
...|+|+|.+|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998864
No 236
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.58 E-value=0.32 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 237
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.34 E-value=18 Score=43.84 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.0
Q ss_pred HHHHHhhhcCCCccc
Q 000434 657 LEAIRISCAGYPTRR 671 (1513)
Q Consensus 657 le~iri~~~Gyp~r~ 671 (1513)
+.-|||-|.|-|.|+
T Consensus 102 I~~irivRd~~pnry 116 (493)
T KOG0804|consen 102 ISDIRIVRDGMPNRY 116 (493)
T ss_pred hheeEEeecCCCceE
Confidence 345566667777664
No 238
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.28 E-value=0.84 Score=52.07 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555556679999999999999999988887764
No 239
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.25 E-value=0.38 Score=58.10 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999988874
No 240
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.23 E-value=0.38 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 241
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.16 E-value=9.7 Score=48.54 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=85.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcccCcccccchhHhhhchhHHHHHHhhcccc
Q 000434 1301 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEE 1380 (1513)
Q Consensus 1301 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~QlF~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 1380 (1513)
+..+....+..|...+..|+.. +++.....+..++..-|+..+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3445667899999999999999 99999999999999999999999999876 56666777777766554443333
Q ss_pred cccchHHHhhhHHHHHHHHhccCCCccCH--------------HHHHHhh-CCCCCHHHHHHHHh
Q 000434 1381 YAGSAWDELKHIRQAVGFLVINQKPKKTL--------------NEITKEL-CPVLSIQQLYRIST 1430 (1513)
Q Consensus 1381 ~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-c~~Ls~~Ql~kIL~ 1430 (1513)
+.......+..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44555689999999999999986554322 1222222 34788888888875
No 242
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=87.15 E-value=1.6 Score=53.98 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344445577788777899999999999999999999888754
No 243
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.15 E-value=55 Score=43.74 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=6.4
Q ss_pred cccChHHHHH
Q 000434 669 TRRTFYEFLH 678 (1513)
Q Consensus 669 ~r~~~~~F~~ 678 (1513)
+|+.+..|+.
T Consensus 23 vrI~l~NF~T 32 (1072)
T KOG0979|consen 23 VRIELHNFLT 32 (1072)
T ss_pred EEEEEeeeee
Confidence 5666777763
No 244
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.11 E-value=0.33 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1513)
|++.|.||||||+.++.+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998873
No 245
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.11 E-value=0.63 Score=50.39 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
+...|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999653
No 246
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.07 E-value=0.47 Score=57.01 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999888763
No 247
>PF05729 NACHT: NACHT domain
Probab=86.98 E-value=0.5 Score=50.03 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999998887643
No 248
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.96 E-value=18 Score=45.13 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=15.2
Q ss_pred cchhHhhhchhHHHHHHhhcc
Q 000434 1358 SNGEYVKAGLAELEQWCYDAT 1378 (1513)
Q Consensus 1358 s~G~qIr~nls~Le~W~~~~~ 1378 (1513)
+.-+-+|.-=..+.+|+++..
T Consensus 707 sed~Vv~WTnhrvmeWLrsiD 727 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSID 727 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhcc
Confidence 344556666678899999875
No 249
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.94 E-value=0.46 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988887764
No 250
>PF12846 AAA_10: AAA-like domain
Probab=86.93 E-value=0.48 Score=55.67 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999998888765
No 251
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.92 E-value=74 Score=37.76 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
++.+-.++..|++.+..++++..-+.....+.+.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333333
No 252
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.90 E-value=41 Score=34.75 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1513)
Q Consensus 1012 ~l~~~l~~le~ei~~Lq~e~~~Lee~i~ 1039 (1513)
.+..++.+++..+..|..++.-|..++.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555443
No 253
>PF13245 AAA_19: Part of AAA domain
Probab=86.88 E-value=0.75 Score=42.60 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667888999999999888888888874
No 254
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=86.83 E-value=0.92 Score=53.21 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.9
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 146 EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+.+.-|-|+|.||||||++++.+...+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356777889999999999999988777754
No 255
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.82 E-value=0.63 Score=56.72 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999998854
No 256
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.81 E-value=70 Score=37.38 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.0
Q ss_pred ccchHHHHHHHHhccc
Q 000434 1119 KPVAASVIYKCLLHWR 1134 (1513)
Q Consensus 1119 kp~pA~il~~cl~~~~ 1134 (1513)
+.+=|.-+|+.+.-|.
T Consensus 309 RllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 309 RLLFANSQFKTWTGYS 324 (401)
T ss_pred HHHHhHHHHHHHhccC
Confidence 4445566666665554
No 257
>PRK09099 type III secretion system ATPase; Provisional
Probab=86.80 E-value=1.2 Score=55.20 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 151 i~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 151 VRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred ceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455566566789999999999999999887776543
No 258
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.78 E-value=17 Score=42.96 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 976 ~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
..++.+++.++.+++..+++++++...+..............+........+..++...+.++..++.....-+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333332222222222233333344444444444444444444444333
No 259
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.77 E-value=6.7 Score=43.39 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee 1036 (1513)
...+..++.++..++..+..++..+.+..+.+..+..+...+.-.+..+++++..|+.+..+|-+
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333443444444444444444444443
No 260
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.75 E-value=63 Score=43.01 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1513)
Q Consensus 974 ~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~ 1039 (1513)
++..+..|+..+-..+..-..-+.++.+....++.+...+..+++..+.++..|+-++..+.+++.
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455555555555666667777888888888888888877777655
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=86.73 E-value=0.77 Score=54.94 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=39.4
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 117 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.++|+-....++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566655555554443322 2355666666667899999999999999999998874
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.69 E-value=1.1 Score=58.51 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
+-.|+..-...+...+.+.++.|+|..|.|||.+++.+++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445554333333334555667899999999999999999988643
No 263
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.57 E-value=0.45 Score=57.59 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999865
No 264
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.54 E-value=66 Score=40.32 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 000434 1027 LQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 1027 Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
|-+.+..|++++....++.+.||
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444443
No 265
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.50 E-value=0.64 Score=55.76 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.2
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+.+.+ ..|+|+|++|||||+..+.++.++-
T Consensus 156 ~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 156 AVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444 4699999999999999998888773
No 266
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.39 E-value=1.1 Score=54.57 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=39.6
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.++|+-....+.- +|+-.. ++++.. .+-+++++++|+.|+|||+.++.+.+.|-+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4667766666654 454433 444444 356899999999999999999999998853
No 267
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.38 E-value=0.37 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999998865
No 268
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.33 E-value=5.9 Score=44.06 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 977 ~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
.+.....+++.+++++++++++...+.. ....++++++.+.+..+..|++++++|++++..++.++..++.+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443322 233445555555666666666666666666666666666655544
No 269
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.31 E-value=0.54 Score=49.34 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1513)
|.|||.+|||||+-++.+-+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999999875
No 270
>PRK06315 type III secretion system ATPase; Provisional
Probab=86.28 E-value=1 Score=55.70 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 135 IADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 135 vA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.-.|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 150 TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 150 TGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred ceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 333444555566789999999999999999999888766
No 271
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.25 E-value=1.4e+02 Score=40.42 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 1015 KKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 1015 ~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
++|++++.+...-+..++....++..|+.+++.+.
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444444445555555554443
No 272
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.24 E-value=59 Score=44.74 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000434 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 166 (1513)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1513)
-.||..+..-.-.-.-.|-|-||+..|.+|||||.|.
T Consensus 147 edVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 147 EDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 3566655443223234788999999999999999875
No 273
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.21 E-value=0.54 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 274
>PRK12377 putative replication protein; Provisional
Probab=86.19 E-value=1.1 Score=51.47 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3566666654444432 35799999999999999999999999753
No 275
>PRK01156 chromosome segregation protein; Provisional
Probab=86.13 E-value=1.6e+02 Score=40.76 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1024 VGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1024 i~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
+..+...++++++++.+++.+...++..
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~ 438 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALREN 438 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555543
No 276
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.07 E-value=0.48 Score=54.09 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.+..++-+-||||+|||++.|.+++-+--.+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 4667889999999999999999998775443
No 277
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.94 E-value=0.85 Score=57.24 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=40.4
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.++|+-..+.++ .+|+-..-..|+ ...+-+|+++++|..|.|||++++.+-+.|-+..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 356665555554 355554333332 2456689999999999999999999999886543
No 278
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.94 E-value=22 Score=40.86 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~L 1041 (1513)
..+..++.+.+.++..|..+....+.+...+
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.89 E-value=8.4 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000434 999 ARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1513)
Q Consensus 999 le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le 1042 (1513)
+.+++...+..+-....+|++.+..+..|..++..|++++.++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555666666777777777777777776666554
No 280
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.87 E-value=1.1e+02 Score=38.84 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000434 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1513)
Q Consensus 971 ~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~----~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~ 1046 (1513)
.+.+++.|..++..++..+.+...+...++.++...... ..+...++.+++..+.-++.+.+.|.++.++|.....
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766666666666666666443222 2345555666666666666666666666677666666
Q ss_pred HHHHHHh
Q 000434 1047 VIRQQAL 1053 (1513)
Q Consensus 1047 ~Lkq~~~ 1053 (1513)
.|++.+.
T Consensus 449 ~Le~r~~ 455 (546)
T PF07888_consen 449 RLEQRLD 455 (546)
T ss_pred HHHHHHH
Confidence 6666543
No 281
>PRK06217 hypothetical protein; Validated
Probab=85.78 E-value=0.5 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1513)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999888763
No 282
>PRK12704 phosphodiesterase; Provisional
Probab=85.76 E-value=29 Score=44.35 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHhc
Q 000434 1389 LKHIRQAVGFLVI 1401 (1513)
Q Consensus 1389 L~~l~Qa~~lLq~ 1401 (1513)
+..|+++++.|..
T Consensus 416 ~a~IV~~ADaLsa 428 (520)
T PRK12704 416 EAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHHHHHhC
Confidence 4455555555543
No 283
>PRK11281 hypothetical protein; Provisional
Probab=85.71 E-value=63 Score=45.01 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 000434 1044 ENQVIRQQ 1051 (1513)
Q Consensus 1044 en~~Lkq~ 1051 (1513)
.|.+|.+.
T Consensus 286 ~N~~Ls~~ 293 (1113)
T PRK11281 286 INLQLSQR 293 (1113)
T ss_pred HHHHHHHH
Confidence 34444443
No 284
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.70 E-value=0.54 Score=57.08 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999875
No 285
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.50 E-value=0.44 Score=56.58 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
.-++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4578889999999999999999999763
No 286
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.49 E-value=0.47 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1513)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887654
No 287
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.46 E-value=0.52 Score=54.95 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999998887754
No 288
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.43 E-value=0.26 Score=66.48 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 877 LKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK 919 (1513)
Q Consensus 877 Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k 919 (1513)
+..+......+++....|+.++.+|+..++.++..+.+.+..+
T Consensus 27 ~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r 69 (859)
T PF01576_consen 27 LEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQR 69 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777777777777777777766665555443
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.41 E-value=0.63 Score=48.94 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
++|+|+||+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998876
No 290
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.40 E-value=0.5 Score=53.04 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=21.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
--+++-|+||||||++.|+|-+-+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4578899999999999999877654
No 291
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.40 E-value=0.89 Score=50.38 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
...+...|.|+|.||||||+.++.+.+.|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988653
No 292
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.40 E-value=0.63 Score=50.24 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
-.|.|.|.||||||+..+.++..|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999998753
No 293
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.37 E-value=42 Score=43.46 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTN 914 (1513)
Q Consensus 882 ~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~ 914 (1513)
-++..|+..+.-|+.++.|....++..+....+
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k~~e~lq~knee 459 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLKSQELLQSKNEE 459 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 356677888888888887776666655543333
No 294
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.37 E-value=1 Score=56.00 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=39.1
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-+.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 56665555444 4666553 44444444 47889999999999999999999988653
No 295
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.29 E-value=0.6 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1513)
-|-|+|-||||||+-++.+..-|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999988875
No 296
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.17 E-value=7.2 Score=48.84 Aligned_cols=34 Identities=9% Similarity=0.326 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000434 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1513)
Q Consensus 1016 ~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lk 1049 (1513)
+++..+.++..|+.++.+-.+.+.+|+.+...++
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556666555555
No 297
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.07 E-value=0.59 Score=49.14 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+|+|.|.+|||||+.+|.+-++|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988773
No 298
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.95 E-value=55 Score=41.94 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcC
Q 000434 1311 SLNSYLKTMKVNY 1323 (1513)
Q Consensus 1311 ~L~~~~~~L~~~~ 1323 (1513)
..++||.+--+||
T Consensus 718 mvdsFHr~Sl~yG 730 (916)
T KOG0249|consen 718 MVDSFHRTSLQYG 730 (916)
T ss_pred HHHHHHHHHHHhh
Confidence 3334443333333
No 299
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.91 E-value=1 Score=53.63 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=35.9
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
++|+-....++..|-- +-...+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3454444444444432 223445555555545689999999999999999988774
No 300
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.90 E-value=42 Score=42.90 Aligned_cols=16 Identities=13% Similarity=-0.093 Sum_probs=9.0
Q ss_pred HHhhhHHHHHHHHhcc
Q 000434 1387 DELKHIRQAVGFLVIN 1402 (1513)
Q Consensus 1387 ~~L~~l~Qa~~lLq~~ 1402 (1513)
..+..|+++++.|...
T Consensus 408 ~~~a~IV~~AD~lsa~ 423 (514)
T TIGR03319 408 SIEAVLVAAADALSAA 423 (514)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 3455566666666543
No 301
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.85 E-value=5.5 Score=44.09 Aligned_cols=61 Identities=28% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1513)
Q Consensus 978 L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i 1038 (1513)
+++++..+.+++..+++++++...+++.+++....+.++.++...+.++|.++.++|++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444444555555555555555555555554444
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.76 E-value=0.97 Score=55.72 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=28.3
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
....+.+.+++|+|.+|+|||.+++.+++.+..
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567789999999999999999999998854
No 303
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.75 E-value=7.4 Score=34.48 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 1009 RNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1009 ~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
...-++-+++++.++.+.|..+...++.....|+.+|+.+++.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666666666653
No 304
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.69 E-value=9.2 Score=43.24 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 974 KIESLTAEVDSLKALLLSERQSAEEARKAC 1003 (1513)
Q Consensus 974 ~~~~L~~e~~~l~~el~~le~~~~~le~~l 1003 (1513)
+.+.|..|+....++|......+..++..+
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444343333333
No 305
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.66 E-value=1.2 Score=56.49 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=39.0
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456555555543 4544432222 3345668999999999999999999999998654
No 306
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.63 E-value=1.3 Score=50.10 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999887654
No 307
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.62 E-value=1.7e+02 Score=39.68 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=5.4
Q ss_pred HHHHHHHHcCC
Q 000434 697 ACEKILDKMGL 707 (1513)
Q Consensus 697 ~~~~il~~~~~ 707 (1513)
....+++.+++
T Consensus 86 v~~~VV~~L~L 96 (754)
T TIGR01005 86 ILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHcCC
Confidence 44455555544
No 308
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=84.51 E-value=1.1 Score=57.53 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=26.2
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 144 INEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.....++.|+|.||+|+|||..|+.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456789999999999999999999887643
No 309
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=84.38 E-value=0.71 Score=50.24 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+|.|.||||||+-||.+.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999884
No 310
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=84.19 E-value=0.65 Score=48.78 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999887754
No 311
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.14 E-value=0.77 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 312
>PRK00106 hypothetical protein; Provisional
Probab=84.07 E-value=1.1e+02 Score=39.07 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccchHHHHHH
Q 000434 898 VEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIES 977 (1513)
Q Consensus 898 l~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~eeLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~ 977 (1513)
+.....+-..+.....-+..+.... +-+++...+.+.-.++.....+.+......+.++- ......+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~A~~~A~-~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeE------------i~~~R~E 87 (535)
T PRK00106 21 LISIKMKSAKEAAELTLLNAEQEAV-NLRGKAERDAEHIKKTAKRESKALKKELLLEAKEE------------ARKYREE 87 (535)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q 000434 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAMS 1056 (1513)
Q Consensus 978 L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~~~~s 1056 (1513)
++++.+.-+.++...++++.+.++.+..-+...++..+++...++++...++++++.++++.++..+....-+....++
T Consensus 88 lEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt 166 (535)
T PRK00106 88 IEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALS 166 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 313
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.06 E-value=3.5 Score=51.28 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
++.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345566777888777899999999999999999888777654
No 314
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.88 E-value=50 Score=44.59 Aligned_cols=18 Identities=0% Similarity=0.126 Sum_probs=8.3
Q ss_pred HHHhhCCCCCHHHHHHHH
Q 000434 1412 ITKELCPVLSIQQLYRIS 1429 (1513)
Q Consensus 1412 i~~~~c~~Ls~~Ql~kIL 1429 (1513)
|+-|.-|.++.....-++
T Consensus 659 IiID~pp~~~~~d~~~l~ 676 (754)
T TIGR01005 659 VVVDVGTADPVRDMRAAA 676 (754)
T ss_pred EEEcCCCcchhHHHHHhh
Confidence 333555555545444333
No 315
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.82 E-value=12 Score=42.24 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
..-+.++.+|+..|.++-....+.++.....+ ..+..-+...+.+....++.+.++.++...|..+...++..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI-------n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDI-------NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666555555544444444444433 34444445555555555555555555666666666555555
No 316
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.81 E-value=1.6 Score=53.89 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 111 ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.++..+..|-+...-...+=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577777777655433334444455555555443321 24789999999999999999886654
No 317
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.76 E-value=1.2e+02 Score=37.24 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=6.4
Q ss_pred ccchHHHHHHHHHH
Q 000434 603 SSIGSRFKLQLQSL 616 (1513)
Q Consensus 603 ~tv~~~f~~~l~~L 616 (1513)
+|+-..-+.+...+
T Consensus 75 ss~~~~s~~~i~q~ 88 (622)
T COG5185 75 SSRNSVSRLSINQL 88 (622)
T ss_pred chhhhhhHHHHHhh
Confidence 34444444444444
No 318
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.73 E-value=0.83 Score=46.40 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999988877
No 319
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.70 E-value=0.94 Score=57.22 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334789999999999999998888774
No 320
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.67 E-value=92 Score=36.19 Aligned_cols=63 Identities=29% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000434 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCN 1040 (1513)
Q Consensus 978 L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~ 1040 (1513)
+...+......+.++++-+.+......+++.-+..-...+++.+.+...+.+......+.+.+
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333334444445555555555555554444443
No 321
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=83.67 E-value=0.85 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 322
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=83.64 E-value=24 Score=40.71 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.4
Q ss_pred hcCCCcccChHHHH
Q 000434 664 CAGYPTRRTFYEFL 677 (1513)
Q Consensus 664 ~~Gyp~r~~~~~F~ 677 (1513)
.-|||--++.+.|.
T Consensus 2 ~LGypr~iSmenFr 15 (267)
T PF10234_consen 2 ALGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCCcHHHcC
Confidence 35999888888876
No 323
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.64 E-value=0.89 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998654
No 324
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=83.63 E-value=1.5 Score=46.90 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
+|...+...| ...++-.|-++|-||||||+.+-.+-+-|...|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 345678999999999999999999999888765
No 325
>PHA00729 NTP-binding motif containing protein
Probab=83.62 E-value=1.5 Score=49.34 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
|...-+.+.. +.-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 5 ~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333344433 3446899999999999999999998764
No 326
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.58 E-value=0.84 Score=49.41 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988765
No 327
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=83.50 E-value=3.2 Score=35.82 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.0
Q ss_pred ccccCcEEEEeCCCCceEEEEEEEecC-CeEEEEeCC-CcEEEEeCCCccCCC
Q 000434 6 NIIVGSHVWVEHPELAWVDGEVFKISA-EEVHVHTTN-GQTVITNISKVFPKD 56 (1513)
Q Consensus 6 ~~~~g~~vw~~~~~~~w~~~~v~~~~~-~~~~v~~~~-~~~~~~~~~~~~~~~ 56 (1513)
++.+|+.|=++..+..|..|+|+++++ +...|...| |....++.+++.+.+
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899888887677899999999987 678888766 888888877766553
No 328
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.49 E-value=22 Score=40.91 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 982 VDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 982 ~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
...++.....|+.......++...+..........+..++.+...-..+...++.++.........-+..+
T Consensus 56 ~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 56 RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444555555555555555555555555555444444443
No 329
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.46 E-value=16 Score=44.16 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=4.4
Q ss_pred CCCCCChhh
Q 000434 638 RPAIFENAN 646 (1513)
Q Consensus 638 ~p~~fd~~~ 646 (1513)
.|..||.+.
T Consensus 62 ~p~e~DDPn 70 (359)
T PF10498_consen 62 QPQEYDDPN 70 (359)
T ss_pred CCcccCCHH
Confidence 355555443
No 330
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.44 E-value=1.6 Score=55.95 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=41.4
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 116 MMEQYKGAQFGELSPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
..++|+-..+.++--|--.+ ..+.++. ..+.++++|++|+.|.|||+.|+.+-+.|.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 34567666555554333222 3444444 446789999999999999999999999997543
No 331
>PRK13764 ATPase; Provisional
Probab=83.38 E-value=0.89 Score=58.29 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999863
No 332
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.31 E-value=0.91 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 333
>PRK04182 cytidylate kinase; Provisional
Probab=83.22 E-value=0.76 Score=49.67 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987655
No 334
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.13 E-value=0.65 Score=58.19 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
...+..=|-||||||||+++..+|.++-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788899999999999999999998654
No 335
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.12 E-value=0.83 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887775
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.06 E-value=1 Score=58.26 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=38.4
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.++- .|+-. ...++. ..+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456555544442 34333 234433 34568999999999999999999999998654
No 337
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.05 E-value=0.87 Score=51.07 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46789999999999999999988876643
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.04 E-value=0.87 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 339
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.80 E-value=1.2e+02 Score=36.58 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q 000434 833 KAAIIIEAYLR 843 (1513)
Q Consensus 833 ~aAv~IQ~~~R 843 (1513)
.|.+.||+.+-
T Consensus 85 ~Asv~IQarae 95 (552)
T KOG2129|consen 85 LASVEIQARAE 95 (552)
T ss_pred hhhhHHhhccc
Confidence 57778887654
No 340
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.77 E-value=0.84 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
+---+.+.|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4456889999999999999988763
No 341
>PRK04040 adenylate kinase; Provisional
Probab=82.68 E-value=1 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998883
No 342
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.53 E-value=1.3 Score=39.26 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEecCCCCCCchhhHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~ 170 (1513)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999776544
No 343
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=82.46 E-value=36 Score=43.09 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=6.8
Q ss_pred ccchHHHHHHHhhcCc
Q 000434 567 DYVVAEHQVLLTASKC 582 (1513)
Q Consensus 567 d~~~~~~~~ll~~S~~ 582 (1513)
|.+..++-.++..+++
T Consensus 52 d~~~~d~~~~~~~~~~ 67 (811)
T KOG4364|consen 52 DGLFDDFREVMDKSKR 67 (811)
T ss_pred chhHHHHHHHhccccc
Confidence 3344444444444443
No 344
>PRK07667 uridine kinase; Provisional
Probab=82.42 E-value=1.7 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
--|-|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999998864
No 345
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.40 E-value=12 Score=34.05 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000434 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1513)
Q Consensus 978 L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~L 1041 (1513)
|+.++..|+..++.+..++...+..+..+..+.+....++.+.-.++..|..+++.|++++.+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555666666666666777777666666665443
No 346
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.32 E-value=1.4 Score=54.65 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+... ....+.+...+...++++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454443 3556677777778899999999999999999987754
No 347
>PRK14527 adenylate kinase; Provisional
Probab=82.15 E-value=1.1 Score=49.21 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999887664
No 348
>PRK06761 hypothetical protein; Provisional
Probab=82.11 E-value=0.87 Score=53.06 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 349
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=82.00 E-value=0.89 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred CeEEEecCCCCCCchhhHHHH
Q 000434 149 SNSILVSGESGAGKTETTKML 169 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~ 169 (1513)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999987
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.99 E-value=0.98 Score=53.84 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987743
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.97 E-value=1.3 Score=47.86 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999887653
No 352
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.95 E-value=19 Score=37.97 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 000434 1041 SESENQVIRQ 1050 (1513)
Q Consensus 1041 Le~en~~Lkq 1050 (1513)
-+.|..+|+.
T Consensus 138 ke~E~~kLk~ 147 (151)
T PF11559_consen 138 KEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 353
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.90 E-value=1.3 Score=56.25 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=41.6
Q ss_pred HHHHhhccCcCCCCchHHHHHH--HHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 116 MMEQYKGAQFGELSPHVFAIAD--VAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~--~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
++++|.-....++.-|-=.|.+ .....+.... ..+-+|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4677877777788888655544 2344444333 35677889999999999999988876
No 354
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.88 E-value=1.6e+02 Score=37.65 Aligned_cols=19 Identities=47% Similarity=0.518 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000434 921 QEIAKLQDALQAMQLQVEE 939 (1513)
Q Consensus 921 ~e~~~L~~~~eeLe~~lee 939 (1513)
.++..|+.+++..+...++
T Consensus 612 ~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.86 E-value=1.9 Score=54.91 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.4
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 117 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.++|+-..+.+.- +|+... ..++.. .+-..++|++|+.|.|||+.++.+.++|-+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566665555553 555543 333333 456788999999999999999999999865
No 356
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=81.81 E-value=1.1 Score=49.53 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=29.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHhhhch-----HHHhhcC
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGN 203 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il~snp-----iLEaFGN 203 (1513)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 211 1112345455555433 6667776
No 357
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=81.75 E-value=1.2 Score=53.85 Aligned_cols=42 Identities=24% Similarity=0.563 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~ 188 (1513)
...|+|-+-|+|||||++..+++.+|+-.-+|+-.-++..|.
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 356999999999999999999999999766554333444444
No 358
>PRK14974 cell division protein FtsY; Provisional
Probab=81.66 E-value=2.3 Score=51.06 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999887643
No 359
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.65 E-value=1 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 360
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.62 E-value=74 Score=39.51 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.1
Q ss_pred CeEEEccCcceeeechhhh
Q 000434 544 SFTISHYAGEVTYLADLFL 562 (1513)
Q Consensus 544 ~F~i~Hyag~V~Y~~~gfl 562 (1513)
.+---|-|| |+-=+..|+
T Consensus 412 ry~~~heaG-vh~v~~S~i 429 (741)
T KOG4460|consen 412 RYHCTHEAG-VHSVGLSWI 429 (741)
T ss_pred cchhhhccc-eEeehhhhH
Confidence 444557788 554444454
No 361
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=81.56 E-value=2.5 Score=44.20 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668999999999999999999999874
No 362
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.56 E-value=2 Score=53.15 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 118 EQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
++|+-..+.+.--|-..+ ..++++... +-++++|++|+.|.|||+.++.+-++|-+
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445544455544444333 246666655 56789999999999999999999998865
No 363
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.43 E-value=1.3 Score=51.97 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 132 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 132 ifavA~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++.....+...+... .+...|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555555555531 245689999999999999999999999765
No 364
>PRK06893 DNA replication initiation factor; Validated
Probab=81.40 E-value=2.2 Score=48.52 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
+..+.+.+ ....+-++++.|+||+|||..+..+-+.+..-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333444 34566789999999999999999999887653
No 365
>PRK15453 phosphoribulokinase; Provisional
Probab=81.40 E-value=1.1 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.=-|.|+|-||||||+.++.+.+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34469999999999999887665443
No 366
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=81.40 E-value=1.3 Score=54.61 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.1
Q ss_pred ccccCcEEEEeCCCCceEEEEEEEecCCeEEEEe
Q 000434 6 NIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHT 39 (1513)
Q Consensus 6 ~~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~v~~ 39 (1513)
....|+.|+|...+ ....|+|+..+++.+.+..
T Consensus 46 ~~~iGe~~~i~~~~-~~~~~eVv~~~~~~~~l~~ 78 (450)
T PRK06002 46 FVRLGDFVAIRADG-GTHLGEVVRVDPDGVTVKP 78 (450)
T ss_pred CCCCCCEEEEECCC-CcEEEEEEEEeCCeEEEEE
Confidence 56789999994333 3488999999988877664
No 367
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.39 E-value=2.9e+02 Score=40.08 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 468899999999999999999998764
No 368
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.35 E-value=87 Score=39.57 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 1026 QLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 1026 ~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
....++..++.++..++.+....+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666655555555444
No 369
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=81.29 E-value=3.2 Score=51.45 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 135 IADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 135 vA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
..-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 131 tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 131 TGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CCceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 344566677777889999999999999999988777643
No 370
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.25 E-value=1e+02 Score=34.77 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 983 DSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1513)
Q Consensus 983 ~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~ 1039 (1513)
++++...++|.+-+.++.+....+....--++++|++.+++|..|.+.++.+.+-+.
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445555555555555555555666677777777666666555554443
No 371
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=81.23 E-value=1.8 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.8
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 334455678999999999999999999998876443
No 372
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=81.23 E-value=1.5 Score=56.56 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 129 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 129 ~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
+|-|.++=.++|.. +.++.-.|+|+|-||||||+.++.+...|..
T Consensus 374 rpeV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 374 FPEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34455555555543 4456669999999999999999999998865
No 373
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.11 E-value=5.8 Score=43.89 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
++..+.+...|+++.+.+..+...|.+++++|+.
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 374
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=81.06 E-value=0.93 Score=53.96 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999888877543
No 375
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.04 E-value=1.9 Score=55.21 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=38.9
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.++|+-..+.++ .+|+-.. ..++.. .+-.+++|++|++|.|||+.++.+.+.|-+
T Consensus 7 ~~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356665555554 3555543 333333 456789999999999999999999999854
No 376
>PRK08727 hypothetical protein; Validated
Probab=81.03 E-value=2.2 Score=48.69 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.7
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
....+.|+|+|.||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999888877654
No 377
>PRK08356 hypothetical protein; Provisional
Probab=80.91 E-value=0.97 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEecCCCCCCchhhHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
--|+|+|.+|||||+.++++-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999854
No 378
>PRK08116 hypothetical protein; Validated
Probab=80.87 E-value=2.5 Score=49.25 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 130 PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 130 PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
.+.|+.|..--...... ..+..+++.|.+|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34566665544444332 345679999999999999999999999764
No 379
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.79 E-value=1.8e+02 Score=39.75 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHH
Q 000434 312 SEEEQDAIFRVVA 324 (1513)
Q Consensus 312 ~~~~~~~i~~ila 324 (1513)
++.+|.+||.-++
T Consensus 105 pes~Q~d~Y~~~v 117 (1041)
T KOG0243|consen 105 PESQQEDLYDQAV 117 (1041)
T ss_pred cchhHHHHHHHHH
Confidence 3444555555433
No 380
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.76 E-value=29 Score=40.85 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHh
Q 000434 1169 SNSSTLLLLLQHT 1181 (1513)
Q Consensus 1169 sN~~~Ll~~Lq~~ 1181 (1513)
+.+..|+++|=.+
T Consensus 202 gyvahlv~lls~y 214 (302)
T PF10186_consen 202 GYVAHLVSLLSRY 214 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 381
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=28 Score=35.00 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000434 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1513)
Q Consensus 1010 ~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~L 1048 (1513)
..++.++++.++.++..|+.+.+++++++.+|++++...
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777765543
No 382
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.70 E-value=1.2 Score=51.32 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=20.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
..-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999998766654
No 383
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.53 E-value=2.3 Score=47.96 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCC--CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 136 ADVAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 136 A~~Ay~~m~~~~~--~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
|-.|-..+..... -..++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445555554432 3579999999999999988888877654
No 384
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.52 E-value=11 Score=34.79 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000434 996 AEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 996 ~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~ 1051 (1513)
++.++.++..+-..+.-++-++++++++...|.++++.+......|+.+|..|++.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 385
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.49 E-value=1.6 Score=44.04 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=23.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999874
No 386
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=80.45 E-value=1.4 Score=46.84 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997643
No 387
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=80.42 E-value=1.4 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
+++++++.|.||+|||+....++.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 458999999999999997665554
No 388
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.38 E-value=2.9 Score=48.78 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 131 HVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 131 HifavA~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 456666666666542 23468999999999999999998888887543
No 389
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=80.36 E-value=6.8 Score=49.64 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.+-.|++.|++|+|||..+|.+.+.|.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 355799999999999999999988774
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.33 E-value=1.6 Score=52.08 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
+..+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999987543
No 391
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.31 E-value=1.2 Score=50.26 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 392
>PRK14528 adenylate kinase; Provisional
Probab=80.27 E-value=1.3 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987766
No 393
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.27 E-value=1.9 Score=55.43 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=40.1
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.++|+-..+.++ .+|+-.+ ++++...+ -.+++|++|+.|.|||++++.+.++|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766555554 4676443 44444444 4899999999999999999999999865
No 394
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.23 E-value=1.1e+02 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en 1045 (1513)
..+.+.++..+..+.+-+.+.++|....++|...+
T Consensus 445 ahLaqalEaerqaLRqCQrEnQELnaHNQELnnRL 479 (593)
T KOG4807|consen 445 AHLAQALEAERQALRQCQRENQELNAHNQELNNRL 479 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 34555666666666777777777766666554443
No 395
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.22 E-value=1.2 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 396
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.21 E-value=2.1 Score=51.76 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 136 ADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 136 A~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44556655544 45899999999999999999999999865
No 397
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.20 E-value=22 Score=36.02 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~L 1048 (1513)
+..++++++.+...+.+-+-+-.+++.+|+.+...+
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 333444444444443333333333444444444333
No 398
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=80.16 E-value=1.4 Score=48.19 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999888653
No 399
>PRK00698 tmk thymidylate kinase; Validated
Probab=80.13 E-value=1.7 Score=48.21 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 400
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.13 E-value=1.8 Score=54.87 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=37.7
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.++ ..|+.+.-..++. ..+-.++++++|++|+|||+.++.+.+.|-+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34554444443 3455443333332 34567899999999999999999999988653
No 401
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=80.12 E-value=3.4 Score=51.38 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000434 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
|...-.+...+..-++.|.+.|.|.||+|||+..+.++.+
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444556666666778999999999999999988877665
No 402
>PRK06936 type III secretion system ATPase; Provisional
Probab=80.09 E-value=1.5 Score=53.99 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.+.-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 44444556666666789999999999999999988777654
No 403
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.07 E-value=1.1e+02 Score=34.30 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 000434 1027 LQESMQRLEEKLCNSESE 1044 (1513)
Q Consensus 1027 Lq~e~~~Lee~i~~Le~e 1044 (1513)
|+..+.+.+-++..|+..
T Consensus 166 Lqa~lkk~e~~~~SLe~~ 183 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEES 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 404
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.07 E-value=1.2 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999887654
No 405
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.06 E-value=0.89 Score=58.49 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.+.+.|.|.|+||||||+..|.+++++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999988753
No 406
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.01 E-value=0.99 Score=53.74 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888766
No 407
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=80.01 E-value=2.1 Score=50.99 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCCCchHHHHHHHHH----HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 126 GELSPHVFAIADVAY----RAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 126 ~~~~PHifavA~~Ay----~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+++|.--..+.... .....-.....|++.|-+|||||+.++.+.+.|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456664444444443 333445678899999999999999999987655
No 408
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.00 E-value=53 Score=42.68 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=3.6
Q ss_pred ccchhhh
Q 000434 713 GKTKVFL 719 (1513)
Q Consensus 713 GkTkVFl 719 (1513)
|+++.|+
T Consensus 105 grs~~~i 111 (563)
T TIGR00634 105 GRSRAYL 111 (563)
T ss_pred CceEEEE
Confidence 4555554
No 409
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.98 E-value=1.3 Score=50.99 Aligned_cols=75 Identities=28% Similarity=0.432 Sum_probs=50.4
Q ss_pred ccCccccccCCeEEEecCCCCCCCCCCHHHHHHhhc-----cCc--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCC
Q 000434 87 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKG-----AQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESG 159 (1513)
Q Consensus 87 ~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~-----~~~--~~~~PHifavA~~Ay~~m~~~~~~QsIiisGeSG 159 (1513)
.-|.=|++.|..=+-||-|+...+ |+- .++- ..+ -.+||=+..+++ ..+--|+|+|.+|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~-~a~----vlR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGG-YAL----VLRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCC-cEE----EEeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCC
Confidence 456779999988888998876531 110 0010 001 135665555443 3566899999999
Q ss_pred CCchhhHHHHHHHHHH
Q 000434 160 AGKTETTKMLMRYLAY 175 (1513)
Q Consensus 160 aGKTe~~k~~~~yla~ 175 (1513)
||||+|.--++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999864
No 410
>PRK04195 replication factor C large subunit; Provisional
Probab=79.93 E-value=1.7 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999999999999888765
No 411
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.88 E-value=2.2e+02 Score=39.33 Aligned_cols=173 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1513)
Q Consensus 875 ~~Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~eeLe~~lee~~~~l~~e~e~l~~~ 954 (1513)
...+.................+.+.+....+......... ..........+.+....++..+......+..........
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 955 IEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRL 1034 (1513)
Q Consensus 955 ~ee~~~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~L 1034 (1513)
.......... .+.....++.....++..+....+........+.............+.+....+..+......+
T Consensus 349 ~~~~~~~~~~------~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 422 (908)
T COG0419 349 AEEKNELAKL------LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL 422 (908)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHhh
Q 000434 1035 EEKLCNSESENQVIRQQALA 1054 (1513)
Q Consensus 1035 ee~i~~Le~en~~Lkq~~~~ 1054 (1513)
+..+.+++.....+......
T Consensus 423 ~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 423 ERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 412
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=79.87 E-value=1.3 Score=49.73 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887654
No 413
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.87 E-value=1.3 Score=49.64 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998877543
No 414
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.87 E-value=2.1 Score=46.80 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 415
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.82 E-value=2.1e+02 Score=37.90 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=5.1
Q ss_pred chhhhhHHHHH
Q 000434 1165 AYWLSNSSTLL 1175 (1513)
Q Consensus 1165 ayWLsN~~~Ll 1175 (1513)
.-|.+-...|-
T Consensus 394 ~~~~~e~q~L~ 404 (717)
T PF09730_consen 394 DRLESEVQNLK 404 (717)
T ss_pred HHHHHHHHHHH
Confidence 34544444443
No 416
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=79.80 E-value=1.3 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
...+.+.|.|+||||||+..|.++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999998887664
No 417
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.79 E-value=1.5 Score=50.99 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
...-.+++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3557899999999999999999999886554
No 418
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.79 E-value=1.3 Score=50.41 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.2
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
=.|+|-|-||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36899999999999999999998754
No 419
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=79.74 E-value=1.3 Score=49.71 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888776543
No 420
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.69 E-value=42 Score=42.18 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhhh
Q 000434 1256 IYGMIRDNLKKDISP 1270 (1513)
Q Consensus 1256 iy~~l~~~i~~~L~~ 1270 (1513)
=|+..+..+.+-+..
T Consensus 563 Gl~qY~n~~r~wv~S 577 (861)
T KOG1899|consen 563 GLGQYMNEVRRWVRS 577 (861)
T ss_pred chHHHHHHHHHHHhc
Confidence 455555555554443
No 421
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.51 E-value=2 Score=50.32 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.+=.|+|+|.||+|||+.+..+..+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 422
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.48 E-value=1.2 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56889999999999999877655443
No 423
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.42 E-value=1.4 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988766
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.40 E-value=3 Score=50.93 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=43.2
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 116 MMEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 116 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
..++|+-..+.++--|-.++ +........ .-++.++++|+.|.|||+.++.+.+++..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34677777777776665543 445555444 56789999999999999999999888865
No 425
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.38 E-value=0.6 Score=62.24 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHH
Q 000434 1036 EKLCNSESENQVIRQQ 1051 (1513)
Q Consensus 1036 e~i~~Le~en~~Lkq~ 1051 (1513)
.++.+++.++..|...
T Consensus 305 ~el~~lq~e~~~Le~e 320 (722)
T PF05557_consen 305 EELAELQLENEKLEDE 320 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 426
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.35 E-value=1.4 Score=49.19 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999988877644
No 427
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=79.32 E-value=1.3 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887654
No 428
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.29 E-value=1.2 Score=53.43 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999887654
No 429
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.20 E-value=1.8 Score=52.11 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 677888888888899999999999999999999998887754
No 430
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=79.19 E-value=1.4 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1513)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988764
No 431
>PRK10646 ADP-binding protein; Provisional
Probab=79.16 E-value=3.2 Score=43.83 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
.-.|++.|+-|||||+-+|-+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999988873
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.14 E-value=1.4 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876544
No 433
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.11 E-value=1.3e+02 Score=34.70 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000434 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1513)
Q Consensus 1017 l~~le~ei~~Lq~e~~~Lee~i~~Le~en~ 1046 (1513)
+..-.+.+++|.+++..|+.++..|..+..
T Consensus 195 i~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444444444444444444444333
No 434
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.06 E-value=17 Score=41.71 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq~~ 1052 (1513)
+-..++..++|+++.++..++..|+.++..|+.+|-+|-++.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888999999999999999999999999998887654
No 435
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.04 E-value=2.5 Score=46.31 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 140 YRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 140 y~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
++++.. .+-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444 446799999999999999999999998865
No 436
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.96 E-value=1.3 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988755
No 437
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.93 E-value=1.9 Score=46.09 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
..|.|.|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=78.91 E-value=1.4 Score=55.43 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
.+-.+.=|-||||||||+.+|.++..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35577888999999999999999887643
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.86 E-value=1 Score=59.11 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
...|.|-|.|+||||||+.+|+++.+..--
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 457899999999999999999998876543
No 440
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.85 E-value=3.4 Score=49.56 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 441
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=78.80 E-value=1.4 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1513)
..-.|.|+|.||+||++..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 446899999999999998776543
No 442
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=78.77 E-value=3.6 Score=50.33 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=39.4
Q ss_pred CHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhc---------CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~---------~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
++..+..|-+...-..+.=+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444445544444344455556666666543332 135899999999999999999887665
No 443
>PLN02939 transferase, transferring glycosyl groups
Probab=78.77 E-value=48 Score=44.96 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=17.6
Q ss_pred HHHHHHhcCc-CCCCCCccCCHHHHHHHHh
Q 000434 1424 QLYRISTMYW-DDKYGTHSVSSEVISSMRV 1452 (1513)
Q Consensus 1424 Ql~kIL~~Y~-~d~~e~~~vs~~~i~~v~~ 1452 (1513)
.+++-...|- |.-+| |.+-..+..|..
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 4555555655 66665 577777887754
No 444
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.74 E-value=1.6e+02 Score=41.17 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 000434 1043 SENQVIRQQAL 1053 (1513)
Q Consensus 1043 ~en~~Lkq~~~ 1053 (1513)
+.|.+|.+.+.
T Consensus 265 ~~N~~Ls~~L~ 275 (1109)
T PRK10929 265 KINRELSQALN 275 (1109)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 445
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.70 E-value=1.2e+02 Score=36.67 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1011 ~~l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
.+...++.+++.++..|+.+.++...+...++.+.+....
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444555444444444445444444333
No 446
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=78.66 E-value=1.3e+02 Score=37.95 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 000434 1019 DTEEKVGQLQESMQRLEEKLCNSES 1043 (1513)
Q Consensus 1019 ~le~ei~~Lq~e~~~Lee~i~~Le~ 1043 (1513)
+...++..++.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=78.65 E-value=1.5 Score=49.28 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988877654
No 448
>PRK13768 GTPase; Provisional
Probab=78.60 E-value=1.7 Score=50.27 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1513)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998643
No 449
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.54 E-value=2.8 Score=52.78 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=37.7
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
++|+-..+.+. ++|+ ....+.+... +-++++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45665555444 4566 3344454444 45688999999999999999999887743
No 450
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.47 E-value=1.5 Score=48.74 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|++|||||+..|.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999888877543
No 451
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.46 E-value=1.6 Score=51.34 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1513)
.|++.|++|+|||..++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 452
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.40 E-value=2.2 Score=46.50 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=53.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCccHHHHHh--hhchHHHh----hcCccccCCCCCCCcccEEEEEEc
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL--ESNPVLEA----FGNAKTVRNNNSSRFGKFVELQFD 224 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~i~~~il--~snpiLEa----FGNAkT~~N~NSSRfGk~~~l~f~ 224 (1513)
-||++|-.|||||+-+|.+.+-|-.-.-....-+..--.-++ +|-||++. |-+-++.|--.|-= --|+-| -|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSal-kn~~VI-vD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSAL-KNYLVI-VD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHh-cceEEE-Ee
Confidence 389999999999999999998886532110000000000011 22333211 11111111000000 013333 45
Q ss_pred CCCCcccceeeeecccCccccccCCCCccceeehhccc
Q 000434 225 KNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA 262 (1513)
Q Consensus 225 ~~g~i~ga~i~~ylLEksRvv~~~~~ErnfHiFYql~~ 262 (1513)
....+.|..-+-|.+-|+|=+ +|-|-|-.+.
T Consensus 81 dtNYyksmRrqL~ceak~~~t-------t~ciIyl~~p 111 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKT-------TWCIIYLRTP 111 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCC-------ceEEEEEccC
Confidence 566788888888888888764 5777776553
No 453
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.35 E-value=20 Score=39.33 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHH
Q 000434 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE----KLCNSESENQV 1047 (1513)
Q Consensus 972 ~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~ei~~Lq~e~~~Lee----~i~~Le~en~~ 1047 (1513)
+..++.|+++++.++..+.+++.+++.......+. .+...+..++++++.++..|+.+++.... .+..+..+...
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444555555555555555555555443322222 33455666777777777777777775543 55566666666
Q ss_pred HHHHHh
Q 000434 1048 IRQQAL 1053 (1513)
Q Consensus 1048 Lkq~~~ 1053 (1513)
.+..+.
T Consensus 147 ~~~~an 152 (188)
T PF03962_consen 147 AKEAAN 152 (188)
T ss_pred HHHHHH
Confidence 665544
No 454
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.33 E-value=0.67 Score=62.54 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 884 TGALKEAKDKLEKRVEELTWRLQFEK 909 (1513)
Q Consensus 884 ~~~L~~~~~~Le~~l~el~~~l~~e~ 909 (1513)
+..|.+.+..|+.++.+++..+++.+
T Consensus 456 v~eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 456 VHELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 455
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.33 E-value=1.4 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.+.+-|-||||||||+.+|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467889999999999999999988765
No 456
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.32 E-value=4.2 Score=50.24 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-.|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 125 i~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 125 IKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555555789999999999999999887766543
No 457
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.31 E-value=1.6 Score=47.43 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876543
No 458
>PRK14531 adenylate kinase; Provisional
Probab=78.26 E-value=1.7 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
|-|+|.|.+|||||+.++.+-+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 459
>PRK06921 hypothetical protein; Provisional
Probab=78.22 E-value=2.1 Score=49.85 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999888887754
No 460
>PLN02796 D-glycerate 3-kinase
Probab=78.20 E-value=1.5 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.0
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
=-|-|+|.||||||+.++.+...|.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3488999999999999998777664
No 461
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.15 E-value=1.6 Score=49.95 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876543
No 462
>PRK00023 cmk cytidylate kinase; Provisional
Probab=78.13 E-value=1.6 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
+-.|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998874
No 463
>PF13479 AAA_24: AAA domain
Probab=78.13 E-value=1.3 Score=49.62 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCeEEEecCCCCCCchhhHHHH
Q 000434 148 KSNSILVSGESGAGKTETTKML 169 (1513)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~ 169 (1513)
++..|+|.|+||+|||..++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999876654
No 464
>PRK03839 putative kinase; Provisional
Probab=78.13 E-value=1.6 Score=47.48 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988765
No 465
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.13 E-value=2.6 Score=55.79 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+...++..+++|.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 556777777888899999999999999999998765
No 466
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.06 E-value=2.8 Score=54.41 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=39.0
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456655555543 45544333333 234568899999999999999999999998653
No 467
>PRK10436 hypothetical protein; Provisional
Probab=78.04 E-value=1.5 Score=55.00 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=26.0
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000434 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1513)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1513)
++.+.. ...=-|+|+|.+|||||+|...+++++.
T Consensus 210 l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 210 FRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 444432 2345799999999999999988888874
No 468
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.99 E-value=1.7 Score=47.24 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=21.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
+++|+|++|+|||..+-.++...+.-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~ 26 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 48999999999999888877776644
No 469
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.98 E-value=1.2e+02 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1016 ~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
+...+..++..|..+...|+.....|+..+..|+.
T Consensus 164 EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 164 ENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555543
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=77.95 E-value=1.6 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 471
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=77.95 E-value=1.5 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 59999999999999999988874
No 472
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.88 E-value=1.5 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000434 152 ILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1513)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998877655
No 473
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=77.86 E-value=2.1 Score=40.55 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000434 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999873
No 474
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=77.81 E-value=4.8 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.5
Q ss_pred CcEEEEeCCC-CceEEEEEEEec-CCeEEEEeCC-CcEEEEeCCCc
Q 000434 10 GSHVWVEHPE-LAWVDGEVFKIS-AEEVHVHTTN-GQTVITNISKV 52 (1513)
Q Consensus 10 g~~vw~~~~~-~~w~~~~v~~~~-~~~~~v~~~~-~~~~~~~~~~~ 52 (1513)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6677777654 899999999988 6678888755 88776665543
No 475
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=77.77 E-value=1.5 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999988876543
No 476
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.73 E-value=1.5 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999988776
No 477
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.65 E-value=3.1 Score=45.32 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1513)
...+.+++.|.+|.|||..+..+.+.+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 35688999999999999999999988876
No 478
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.61 E-value=1.6 Score=48.72 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888776543
No 479
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.60 E-value=1.7 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888776544
No 480
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=77.49 E-value=3.6 Score=50.65 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=20.8
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000434 150 NSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
-+|++.|++|+|||+.+|.+-+.+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999999876543
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.36 E-value=3.4 Score=51.88 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=39.7
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 118 EQYKGAQFGELSPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 118 ~~y~~~~~~~~~PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
++|+-..+.+.--|--.++ ..+.+.. .+-.+++|++|+.|.|||+.++.+.++|...
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4566555555544443333 3444444 4457999999999999999999999998653
No 482
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.34 E-value=3.2 Score=52.83 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=41.3
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000434 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1513)
Q Consensus 117 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1513)
.++|+-+.+.++ .+||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 467776666555 355544 444444 45678999999999999999999999998653
No 483
>PRK06620 hypothetical protein; Validated
Probab=77.32 E-value=2.9 Score=47.00 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=17.9
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000434 150 NSILVSGESGAGKTETTKML 169 (1513)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1513)
.+++|.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888753
No 484
>PRK05439 pantothenate kinase; Provisional
Probab=77.21 E-value=3.7 Score=48.65 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH----------hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 131 HVFAIADVAYRAMI----------NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 131 HifavA~~Ay~~m~----------~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
|+-.+-..++..+. ..+.+--|-|+|-+|||||+.++.+...|
T Consensus 58 rli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 58 RLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHH
No 485
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.16 E-value=2.9 Score=51.84 Aligned_cols=61 Identities=31% Similarity=0.368 Sum_probs=0.0
Q ss_pred CHHHHHHhhccCcCCCCchHHHHHHHHHHHH-----HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAM-----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m-----~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+-.+.+|+-....++.-|-=.|++-=-.-- ...-+++-.+|+|.||+|||+|.|.+-+=|
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
No 486
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.14 E-value=3 Score=53.73 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 118 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
++|+-+.+.++ .+|+-..=..++.. .+-.+++|++|+.|.|||+++|.+.+.+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHh
No 487
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.12 E-value=3.1 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 130 PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
|++=.+-+.+.+.+.. +..|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
No 488
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=77.10 E-value=3e+02 Score=38.72 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000434 874 LRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLR----------TNLEEEKAQEIAKLQDALQAMQLQVEEANFR 943 (1513)
Q Consensus 874 l~~Lk~~a~e~~~L~~~~~~Le~~l~el~~~l~~e~~~~----------~~le~~k~~e~~~L~~~~eeLe~~lee~~~~ 943 (1513)
+..+..........+.....++.++.+++..+....... .............+......+...+......
T Consensus 667 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 746 (1047)
T PRK10246 667 LATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQR 746 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCC-CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HhHhhHH
Q 000434 944 ILKEQEAARKAIEEAP-PIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMD----------AEVRNTE 1012 (1513)
Q Consensus 944 l~~e~e~l~~~~ee~~-~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~----------~e~~~~~ 1012 (1513)
+......+...+.+.. ...............++.+++++..+...+......+.+.++.+.. .....+.
T Consensus 747 ~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 826 (1047)
T PRK10246 747 LQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQ 826 (1047)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000434 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1513)
Q Consensus 1013 l~~~l~~le~ei~~Lq~e~~~Lee~i~~Le~en~~Lkq 1050 (1513)
+...+..++.++..+......+...+...+.-..++..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 864 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQA 864 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.06 E-value=1.5 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.+.|.+.|.|+||||||+..|.++..+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
No 490
>PLN02318 phosphoribulokinase/uridine kinase
Probab=77.00 E-value=2.6 Score=53.43 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCC-eEEEecCCCCCCchhhHHHHHHHH
Q 000434 133 FAIADVAYRAMINEGKS-NSILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 133 favA~~Ay~~m~~~~~~-QsIiisGeSGaGKTe~~k~~~~yl 173 (1513)
|-++-+|-.-+...... -.|-|+|.||||||+.++.|...+
T Consensus 48 ~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 48 FFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred hhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
No 491
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=76.99 E-value=1.8 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1513)
...+.+.|.|++|||||+..+.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 492
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=76.97 E-value=1.7 Score=51.00 Aligned_cols=21 Identities=48% Similarity=0.847 Sum_probs=0.0
Q ss_pred EEEecCCCCCCchhhHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMR 171 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~ 171 (1513)
.|+|.|+||+||||+|=-+++
T Consensus 148 GvLi~G~SG~GKSelALeLi~ 168 (308)
T PRK05428 148 GVLITGESGIGKSETALELIK 168 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
No 493
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=76.83 E-value=1.8 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1513)
...+.+.|.|+||||||+..|.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.82 E-value=25 Score=37.97 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhH
Q 000434 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEE--------KLCNSE 1042 (1513)
Q Consensus 973 ~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~--~~~l~~~l~~le~ei~~Lq~e~~~Lee--------~i~~Le 1042 (1513)
+.+..+..++..++.++..++..+..++.++..+... .+++...+..++.++..|+..+..|+. ++..++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 151 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLE 151 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHH
Q 000434 1043 SENQVIRQ 1050 (1513)
Q Consensus 1043 ~en~~Lkq 1050 (1513)
.+......
T Consensus 152 ~~~~~~~k 159 (169)
T PF07106_consen 152 KEYKKWRK 159 (169)
T ss_pred HHHHHHHH
No 495
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=76.81 E-value=1.8 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1513)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHh
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.79 E-value=1.9 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKML 169 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~ 169 (1513)
.+...++|.|.||||||+..+.+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
No 497
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.76 E-value=1.3e+02 Score=35.55 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHH
Q 000434 902 TWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQV--------------------------------------EEANFR 943 (1513)
Q Consensus 902 ~~~l~~e~~~~~~le~~k~~e~~~L~~~~eeLe~~l--------------------------------------ee~~~~ 943 (1513)
+.++...+..+++..+-+-+++++.+++.++..... +..-..
T Consensus 2 EarlaakR~araEAR~iRmreLErqqkE~ee~~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~dse~s~r~ 81 (302)
T PF09738_consen 2 EARLAAKRAARAEAREIRMRELERQQKEQEENSDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVDSEASLRD 81 (302)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccCCccchhhhcCCCCCCCCCCCCcccccccccccHHH
Q ss_pred HHHHHHHHHHHHHhCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHHHHHHHHH
Q 000434 944 ILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEK 1023 (1513)
Q Consensus 944 l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~L~~e~~~l~~el~~le~~~~~le~~l~~~e~~~~~l~~~l~~le~e 1023 (1513)
+..+..+++.....+ ......|..|+..+.-+++-|.+++.++++.+..+..+..+....++.+...
T Consensus 82 lk~~l~evEekyrkA-------------Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKA-------------MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 000434 1024 VGQLQESMQRLEEKLCNSESENQV 1047 (1513)
Q Consensus 1024 i~~Lq~e~~~Lee~i~~Le~en~~ 1047 (1513)
+..|+.++..|++++.+...-+++
T Consensus 149 ~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 149 HDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=76.75 E-value=1.1 Score=46.45 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1513)
..+..|+|.||+|+||+..++++-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
No 499
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.74 E-value=1.8 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000434 147 GKSNSILVSGESGAGKTETTKMLM 170 (1513)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1513)
...+.+.|.|+||||||+..|.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 500
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=76.70 E-value=2 Score=44.68 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000434 151 SILVSGESGAGKTETTKMLMRYL 173 (1513)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1513)
.|+|.|.||||||+..|.+-.-|
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh
Done!