BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000438
(1510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 213/936 (22%), Positives = 410/936 (43%), Gaps = 68/936 (7%)
Query: 623 MLSRELVNESVERVEGCDDNIA--VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVG 680
+L R+ V +S + D I + V + F++ L+ +NL + G A+VG
Sbjct: 392 VLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVG 451
Query: 681 TVGSGKSSLLASILGEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEEN 727
+ G GKS++++ +L + GK+ + G A V+Q + N TIEEN
Sbjct: 452 SSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN 511
Query: 728 ILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786
I G + R + ++ EK ++ + G T +G+RG LSGGQKQRI +ARA+ +
Sbjct: 512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571
Query: 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ I LLD+ SA+DA + I ++ + A KG+T I++ H++ + N DLI+ + G +
Sbjct: 572 NPKILLLDEATSALDAES-EGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQV 630
Query: 847 VQSGRYNALLNSGMDFGALVAAH--ETSMELVEVGK-TMPSGNSPKTPKSPQITSNLQEA 903
V+ G + AL+ + LV A +++ GK + + + +T + ++ E
Sbjct: 631 VEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEM 690
Query: 904 NGENKSVEQSN-SDKGNSKLIKEEERETGKVGLHVYKIYCTEAYG---------WWGVVA 953
+ V S N +I E+E GK L K E +
Sbjct: 691 DDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPH 750
Query: 954 VLLLSVAWQGSLMAGDYWLSYE---TSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRA-- 1008
L L + + + G + +Y TS + + NP+ F+ A++ +V+ +
Sbjct: 751 ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGIC 810
Query: 1009 -----YFVTHVGLKTAQIFFSQILRSILHAPMSFFDT--TPSGRILSRASTDQTNIDLFL 1061
+F+ + +++ R++L + FFD+ SG+I +R +TD N+ +
Sbjct: 811 SFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAI 870
Query: 1062 PFFVGITVAMYITLLGIFIITCQYAWPTIFLVI---PLAWANYWYRGYYLSTSRELTRLD 1118
F + ++++ + Y W L+I P+ + RG T + +
Sbjct: 871 DFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRF-TGKNVKSAS 929
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVN----GNLRMDFHNNGSNEWLG 1174
+ I E+I V T++A ++ TFY+ +++ ++ F S
Sbjct: 930 EFADSGKIA--IEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCAS 987
Query: 1175 FRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXXFWAIYMSCFVENRMV 1234
L LL + + + +I P ++ F Y + +
Sbjct: 988 SVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFA 1047
Query: 1235 S---VERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL-VLKGITL 1290
+++ ++I S + + +L +G V +++ Y + +LKG++
Sbjct: 1048 GGIIFGMLRKISKIDSLSLAGEKKKL-------YGKVIFKNVRFAYPERPEIEILKGLSF 1100
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQ 1350
S+ G+ + +VG +G GKST++ + R + RS+ I+ Q
Sbjct: 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQ 1160
Query: 1351 EPVLFEGTVRSNI----DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406
EP LF+ ++ NI DP + ++ ++ + + +A P+ ++ V D G S
Sbjct: 1161 EPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219
Query: 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTV 1466
GQ+Q + + R ++++ ++L +DEAT+++D++++ +Q + T I IAHR+ TV
Sbjct: 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV 1279
Query: 1467 MDCDRVIVVDAGWAKEFGKPSRLLERPSLFGALVQE 1502
M+ D + VV G E G ++L+ + L Q+
Sbjct: 1280 MNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQK 1315
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 142/215 (66%), Gaps = 3/215 (1%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
++ VR+ F+W + L I I +G L A+VG VG GKSSLL+++L EM K+ G
Sbjct: 3 SITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 704 VKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
V + G+ AYV Q +WIQN ++ ENILFG + Y V++ C L DLE++ GD+TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGALKGKT 821
GE+G+NLSGGQKQR+ LARAVY + DIYL DD SAVDAH G IF+ + +G LK KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 822 IILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
ILVTH + +L VD+I+VM G I + G Y LL
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 19/232 (8%)
Query: 1278 RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXX 1337
RS+ P L GIT SI G + VVG+ G GKS+L+ ++
Sbjct: 15 RSDPP-TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-------------KVEG 60
Query: 1338 XXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDS 1396
+ +PQ+ + ++R NI G +E ++S ++ C L + P +
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENI-LFGCQLEEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRII--REEFAA 1453
+ + G N S GQ+Q + L R + ++ + D+ ++VD+ I + +I +
Sbjct: 120 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179
Query: 1454 CTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFGALVQEYAN 1505
T I + H + + D +IV+ G E G LL R F ++ YA+
Sbjct: 180 KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%)
Query: 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706
V + V ++ +E G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K
Sbjct: 20 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 79
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G ++ +Q SWI GTI+ENI+FG+ + +Y V++ C LE+D+ D +GE
Sbjct: 80 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
GI LSGGQ+ RI LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
+++ L D IL++ EG G ++ L N DF +
Sbjct: 200 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 237
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 17/214 (7%)
Query: 1278 RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXX 1337
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 30 EGGTP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------- 80
Query: 1338 XXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDS 1396
R Q + GT++ NI G DE ++S ++ CQL++ ++ +K +
Sbjct: 81 -----GRISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 134
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACT 1455
++ + G S GQR + L R + K + L +D +D T+ EI + + + A T
Sbjct: 135 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 194
Query: 1456 IISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
I + ++ + D+++++ G + +G S L
Sbjct: 195 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%)
Query: 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706
V + V ++ +E G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K
Sbjct: 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G ++ +Q SWI GTI+ENI+FG+ + +Y V++ C LE+D+ D +GE
Sbjct: 68 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
GI LSGGQ+ RI LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
+++ L D IL++ EG G ++ L N DF +
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 17/214 (7%)
Query: 1278 RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXX 1337
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 18 EGGTP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------- 68
Query: 1338 XXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDS 1396
R Q + GT++ NI G DE ++S ++ CQL++ ++ +K +
Sbjct: 69 -----GRISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACT 1455
++ + G S GQR + L R + K + L +D +D T+ EI + + + A T
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 1456 IISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
I + ++ + D+++++ G + +G S L
Sbjct: 183 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 176 bits (447), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 134/219 (61%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LKNINL I+KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SW
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+FG+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +F+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
L++ +G G ++ L + DF + + ++T + E
Sbjct: 230 LILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VLK I L+I GE + + G TGSGK++L+ + +E S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSG 1402
R Q + GT++ NI G DE +KS ++ CQL+ + ++ ++++ + G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAH 1461
S GQR + L R + K + L +D +D T+ ++ + + + A T I +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1462 RIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
++ + D+++++ G + +G S L RP L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 176 bits (446), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 134/219 (61%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LKNINL I+KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SW
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+FG+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +F+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
L++ +G G ++ L + DF + + ++T + E
Sbjct: 230 LILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VLK I L+I GE + + G TGSGK++L+ + +E S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLER-CQLKDVVAAKPDKLDSLVADSG 1402
R Q + GT++ NI G DE +KS+ + CQL+ + ++ ++++ + G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAH 1461
S GQR + L R + K + L +D +D T+ ++ + + + A T I +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1462 RIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
++ + D+++++ G + +G S L RP L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 133/219 (60%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LKNINL I+KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SW
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI
Sbjct: 110 IMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +F+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
L++ +G G ++ L + DF + + ++T + E
Sbjct: 230 LILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VLK I L+I GE + + G TGSGK++L+ + +E S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSG 1402
R Q + GT++ NI Y DE +KS ++ CQL+ + ++ ++++ + G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSY-DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAH 1461
S GQR + L R + K + L +D +D T+ ++ + + + A T I +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1462 RIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
++ + D+++++ G + +G S L RP L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 173 bits (438), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 133/219 (60%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LKNINL I+KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SW
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +F+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
L++ +G G ++ L + DF + + ++T + E
Sbjct: 230 LILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VLK I L+I GE + + G TGSGK++L+ + +E S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSG 1402
R Q + GT++ NI Y DE +KS ++ CQL+ + ++ ++++ + G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSY-DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAH 1461
S GQR + L R + K + L +D +D T+ ++ + + + A T I +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1462 RIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
++ + D+++++ G + +G S L RP L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 127/206 (61%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y V++ C LE+D+ D +GE GI LSGGQ+ RI
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGA 864
L++ EG G ++ L N DF +
Sbjct: 230 LILHEGSSYFYGTFSELQNLQPDFSS 255
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 51 TP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 98
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
R Q + GT++ NI Y + ++ CQL++ ++ +K + ++ +
Sbjct: 99 --GRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISI 1459
G S GQR + L R + K + L +D +D T+ EI + + + A T I +
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 1460 AHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
++ + D+++++ G + +G S L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 134/218 (61%), Gaps = 1/218 (0%)
Query: 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706
V + V ++ +E G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K
Sbjct: 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G ++ +Q SWI GTI+ENI+ G+ + +Y V++ C LE+D+ D +GE
Sbjct: 68 SGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
GI LSGGQ+ RI LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
+++ L D IL++ EG G ++ L N DF +
Sbjct: 187 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 224
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 1278 RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXX 1337
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 18 EGGTP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------- 68
Query: 1338 XXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDS 1396
R Q + GT++ NI IG DE ++S ++ CQL++ ++ +K +
Sbjct: 69 -----GRISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 121
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACT 1455
++ + G S GQR + L R + K + L +D +D T+ EI + + + A T
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 1456 IISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
I + ++ + D+++++ G + +G S L
Sbjct: 182 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 133/219 (60%), Gaps = 1/219 (0%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LKNINL I+KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SW
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI
Sbjct: 110 IMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 168
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +F+ CV + KT ILVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 228
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
L++ +G G ++ L + DF + + ++T + E
Sbjct: 229 LILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 267
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 18/220 (8%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VLK I L+I GE + + G TGSGK++L+ + +E S
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSG 1402
R Q + GT++ NI IG DE +KS ++ CQL+ + ++ ++++ + G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 157
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAH 1461
S GQR + L R + K + L +D +D T+ ++ + + + A T I +
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
Query: 1462 RIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
++ + D+++++ G + +G S L RP L+
Sbjct: 218 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 257
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 127/206 (61%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+FG+ + +Y V++ C LE+D+ D +GE GI LS GQ+ +I
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGA 864
L++ EG G ++ L N DF +
Sbjct: 230 LILHEGSSYFYGTFSELQNLQPDFSS 255
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 51 TP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 98
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVA 1399
R Q + GT++ NI G DE ++S ++ CQL++ ++ +K + ++
Sbjct: 99 --GRISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIIS 1458
+ G S GQ+ + L R + K + L +D +D T+ EI + + + A T I
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1459 IAHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
+ ++ + D+++++ G + +G S L
Sbjct: 216 VTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y V++ C LE+D+ D +GE GI LSGGQ+ RI
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGA 864
L++ EG G ++ L N DF +
Sbjct: 229 LILHEGSSYFYGTFSELQNLRPDFSS 254
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 51 TP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 98
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVA 1399
R Q + GT++ NI IG DE ++S ++ CQL++ ++ +K + ++
Sbjct: 99 --GRISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIIS 1458
+ G S GQR + L R + K + L +D +D T+ EI + + + A T I
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1459 IAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
+ ++ + D+++++ G + +G S L RP L+
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLM 257
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y V++ C LE+D+ D +GE GI LSGGQ+ RI
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGA 864
L++ EG G ++ L N DF +
Sbjct: 229 LILHEGSSYFYGTFSELQNLRPDFSS 254
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 51 TP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 98
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVA 1399
R Q + GT++ NI IG DE ++S ++ CQL++ ++ +K + ++
Sbjct: 99 --GRISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIIS 1458
+ G S GQR + L R + K + L +D +D T+ EI + + + A T I
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1459 IAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLE-RPSLFGALV 1500
+ ++ + D+++++ G + +G S L RP L+
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLM 257
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
I GTI+ENI+ G+ + +Y V++ C LE+D+ D +GE GI LS GQ+ +I
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 168
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
LARAVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGA 864
L++ EG G ++ L N DF +
Sbjct: 229 LILHEGSSYFYGTFSELQNLQPDFSS 254
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 18/211 (8%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
TP VLK I I G+ + V G TG+GK++L+ + +EPS
Sbjct: 51 TP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 98
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVA 1399
R Q + GT++ NI IG DE ++S ++ CQL++ ++ +K + ++
Sbjct: 99 --GRISFCSQFSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIIS 1458
+ G S GQ+ + L R + K + L +D +D T+ EI + + + A T I
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1459 IAHRIPTVMDCDRVIVVDAGWAKEFGKPSRL 1489
+ ++ + D+++++ G + +G S L
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 131/233 (56%), Gaps = 1/233 (0%)
Query: 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1322 SXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERC 1381
+ R FG+IPQ+ +F GT R N+DP +SD+EIWK +
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L+ V+ P KLD ++ D G S G +QL+CL R +L +++L +DE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
I+R +++ FA CT+I RI +++CD+ +V++ +++ L P+
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------ 710
E G L+NI+ I G ++G GSGKS+LL++ L + G++++ G +
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITL 89
Query: 711 -------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+ Q +I +GT +N+ + + +V L +E +
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
+ G LS G KQ + LAR+V I LLD+ + +D T I + ++ A T+I
Sbjct: 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVI 208
Query: 824 LVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
L +++ + D LV+ E + Q Y+++L
Sbjct: 209 LCEARIEAMLECDQFLVIEENKVRQ---YDSIL 238
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 137/505 (27%), Positives = 224/505 (44%), Gaps = 61/505 (12%)
Query: 1024 SQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFL-----PFFVGITVAMYITLLGI 1078
++ + P+ FFD TP G I+SR D NI+ L FF GI V + ++ +
Sbjct: 114 KELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI-VTLAGAVIMM 172
Query: 1079 FIITCQYAWPTIFLVIPLA-----WANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESI 1133
F + + T+ +V PL + R Y+ R L +L+ I + E I
Sbjct: 173 FRVNVILSLVTLSIV-PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE--------EDI 223
Query: 1134 SGVMTIRAFGKQTTFYQENVNRVNGNLR----------------MDFHNNGSNEWLGFRL 1177
SG+ I+ F ++ E +RVN +LR M+ NN LGF
Sbjct: 224 SGLTVIKLFTREEK-EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN-----LGF-- 275
Query: 1178 ELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVE 1237
L+ F LA L I+ +I F I M+ + S E
Sbjct: 276 ALISGFGGWLA-LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMA------LASAE 328
Query: 1238 RIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEK 1297
RI + ++ E +D G ++ ++ Y P VLK IT I G+K
Sbjct: 329 RIFEILDLEEEK----DDPDAVELREVRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQK 383
Query: 1298 IGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG 1357
+ +VG TGSGK+T++ + R + RS GI+ Q+ +LF
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 1358 TVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414
TV+ N+ +P +DEEI ++ + + P+ ++++ D+G++ S GQRQLL
Sbjct: 444 TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501
Query: 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIV 1474
+ R L + ++L +DEAT++VD++T+ IQ + + T I IAHR+ T+ + D +IV
Sbjct: 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV 561
Query: 1475 VDAGWAKEFGKPSRLLERPSLFGAL 1499
+ G E GK L+++ + L
Sbjct: 562 LRDGEIVEMGKHDELIQKRGFYYEL 586
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 157/320 (49%), Gaps = 34/320 (10%)
Query: 564 LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQA--MISLARLDK 621
+++ L FA FG L + T TI + R F + + LS MI +A
Sbjct: 269 MVNNLGFALISGFGGWLALKDIITVGTIATFIGYS-RQFTRPLNELSNQFNMIQMA---- 323
Query: 622 YMLSRELVNESVERVEGCDDNIAVEVRDGV---------FSWDDENGEECLKNINLEIKK 672
+ S E + E ++ E DD AVE+R+ FS+D + + LK+I IK
Sbjct: 324 -LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKP 380
Query: 673 GDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTAYVAQTSWI 719
G A+VG GSGK++++ ++ G++ V G + V Q + +
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 720 QNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
+ T++EN+ +G P + E ++ + ++ + G +T + + G +LS GQ+Q +
Sbjct: 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
+ RA + I +LD+ S VD T I + + ++GKT I++ H+++ + N DLI
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLI 559
Query: 839 LVMREGMIVQSGRYNALLNS 858
+V+R+G IV+ G+++ L+
Sbjct: 560 IVLRDGEIVEMGKHDELIQK 579
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 211/476 (44%), Gaps = 19/476 (3%)
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFI---- 1080
+ R +L +S + + +++R + D T + + + I V + +G +
Sbjct: 101 DLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVS 160
Query: 1081 ITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIR 1140
I + + IFL+ P+ W L R + V E++ GV +R
Sbjct: 161 INVKLSSVLIFLIPPIVLLFVWLT----KKGNPLFRKIQESTDEVNRVVRENLLGVRVVR 216
Query: 1141 AFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSII 1200
AF ++ + EN + N +LR + S + F L L F + + ++ ++
Sbjct: 217 AF-RREEYENENFRKANESLRRSIISAFS--LIVFALPLF-IFIVNMGMIAVLWFGGVLV 272
Query: 1201 KP-EXXXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVE-RIKQFTEIPSE--AAWKMEDR 1256
+ + +++ M + N +V K+ E+ +E A + ++
Sbjct: 273 RNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNA 332
Query: 1257 LPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF 1316
L PN G+V +++ RY NT VL G+ S+ G + V+G TGSGKSTL+ +
Sbjct: 333 LALPN--VEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390
Query: 1317 RLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID-PIGQYSDEEIW 1375
RL++P R +PQE VLF GT++ N+ +D+EI
Sbjct: 391 RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIV 450
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
++ + Q+ D + + P+ DS V G N+S GQ+Q L + R ++K ++L +D+ T+SV
Sbjct: 451 EAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510
Query: 1436 DSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLE 1491
D T+ I ++ CT I +IPT + D+++V+ G FG LLE
Sbjct: 511 DPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 126/568 (22%), Positives = 238/568 (41%), Gaps = 54/568 (9%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGK---SSSFYEGYYLVLILLVAK 379
L+ +W +V + P L+ R VD + S G ++++ L+
Sbjct: 18 LKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGA 77
Query: 380 FVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQL 439
+ T ++ SQ G +R L+RK L S S ++ + D QL
Sbjct: 78 VGGIGCTVFASYASQNFGADLR----RDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 440 SDM-MLQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQFN 498
++ M+ L V PL +++ + K+ N
Sbjct: 134 QNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRK 193
Query: 499 VMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVM 558
+ ++ D + E L +RV++ E++ N+ +FR++ + + S +++
Sbjct: 194 IQESTDEVNRVVRENLLGVRVVRAFRREEYENE---NFRKANESLRRSIISAFS---LIV 247
Query: 559 WSTPV--------LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLS 610
++ P+ +I+ L F L+ ++ GS+ T + + + +
Sbjct: 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 611 QAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDD------ENGEECLK 664
+A S R+ E++NE +E D+ +A+ +G S+++ EN + L
Sbjct: 308 RASASAKRV------LEVLNEK-PAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLS 360
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC-------------GTTA 711
+N +K G L A++G GSGKS+L+ I + G+V+V G +
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420
Query: 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVV---RVCCLEKDLEMMEYGDQTEIGERGI 768
V Q + + +GTI+EN+ +G A E+V ++ + + + G + + G
Sbjct: 421 AVPQETVLFSGTIKENLKWG--REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
N SGGQKQR+ +ARA+ + + +LDD S+VD T I + ++ KG T ++T +
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQK 537
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ D ILV+ EG + G + LL
Sbjct: 538 IPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 216/502 (43%), Gaps = 39/502 (7%)
Query: 1017 KTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLL 1076
K Q FF +I++ + +FD G + +R + D + I+ + +G+ T
Sbjct: 142 KIRQKFF----HAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFF 197
Query: 1077 GIFIITCQYAWPTIFLVIPLA-----WANYWYRGYYLSTSRELTRLDSITKAPVIHHFSE 1131
G FII W +++ ++ A W + T +EL + KA + E
Sbjct: 198 GGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL---HAYAKAGAVAE--E 252
Query: 1132 SISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF 1191
++ + T+ AFG Q ++ + R N NL + G + + + + +F A+
Sbjct: 253 VLAAIRTVIAFGGQ----KKELERYNNNLE-EAKRLGIKKAITANISMGAAFLLIYASYA 307
Query: 1192 MILL--PSSIIKPEXXXXXXXXXXXXXXXXFWAI-----YMSCFVENRMVSVERIKQFTE 1244
+ S +I E +++ + F R + E K
Sbjct: 308 LAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN 367
Query: 1245 IPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL-VLKGITLSIHGGEKIGVVGR 1303
PS ++ P GN++ ++ Y S + +LKG+ L + G+ + +VG
Sbjct: 368 KPSIDSFSKSGHKPDN---IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGN 424
Query: 1304 TGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI 1363
+G GKST +Q+ RL +P R G++ QEPVLF T+ NI
Sbjct: 425 SGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI 484
Query: 1364 DPIGQYSDE-----EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418
+Y E EI K+++ D + P + D+LV + G S GQ+Q + + R
Sbjct: 485 ----RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
Query: 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++++ ++L +DEAT+++D++++A +Q + + T I IAHR+ TV + D + D G
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG 600
Query: 1479 WAKEFGKPSRLLERPSLFGALV 1500
E G L+ ++ LV
Sbjct: 601 VIVEQGNHDELMREKGIYFKLV 622
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 135/255 (52%), Gaps = 9/255 (3%)
Query: 1260 PNWPAHGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317
PN GNV + Y R + P VL+G++L + G+ + +VG +G GKST++Q+ R
Sbjct: 1024 PNM-LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 1318 LVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEI 1374
+P R++ GI+ QEP+LF+ ++ NI D S EEI
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
++ + + + + PDK ++ V D G S GQ+Q + + R +++ +L +DEAT++
Sbjct: 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+D++++ +Q + + T I IAHR+ T+ + D ++V+ G KE G +LL +
Sbjct: 1202 LDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG 1261
Query: 1495 LFGAL--VQEYANRS 1507
++ ++ VQ A RS
Sbjct: 1262 IYFSMVSVQAGAKRS 1276
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 23/225 (10%)
Query: 651 VFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT 710
VF++ L+ ++LE+KKG A+VG+ G GKS+++ + ++G V + G
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 711 AYVAQTSWIQ-------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
W++ + +I ENI +G Y E+VR K+ + ++
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---KEANIHQF 1153
Query: 758 GD------QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
D T +G++G LSGGQKQRI +ARA+ + I LLD+ SA+D + + +E
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 812 CVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+ A +G+T I++ H++ + N DLI+V++ G + + G + LL
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 18/255 (7%)
Query: 641 DNIA--VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH 698
DNI +E ++ FS+ + LK +NL++K G A+VG G GKS+ + +
Sbjct: 382 DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441
Query: 699 KISGKVKVCGTTAYVAQTSWIQN--GTI-EENILFGLPM-NRAKYG-EVVRVCCLEKDLE 753
+ G V + G +++ G + +E +LF + +YG E V + +EK ++
Sbjct: 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVK 501
Query: 754 MMEYGD---------QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
D T +GERG LSGGQKQRI +ARA+ ++ I LLD+ SA+D +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 805 GSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
+ + + + A +G+T I++ H++ + N D+I G+IV+ G ++ L+ +
Sbjct: 562 EA-VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 865 LVAAHETSMELVEVG 879
LV E +E+G
Sbjct: 621 LVMTQTAGNE-IELG 634
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 216/502 (43%), Gaps = 39/502 (7%)
Query: 1017 KTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLL 1076
K Q FF +I++ + +FD G + +R + D + I+ + +G+ T
Sbjct: 142 KIRQKFF----HAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFF 197
Query: 1077 GIFIITCQYAWPTIFLVIPLA-----WANYWYRGYYLSTSRELTRLDSITKAPVIHHFSE 1131
G FII W +++ ++ A W + T +EL + KA + E
Sbjct: 198 GGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL---HAYAKAGAVAE--E 252
Query: 1132 SISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF 1191
++ + T+ AFG Q ++ + R N NL + G + + + + +F A+
Sbjct: 253 VLAAIRTVIAFGGQ----KKELERYNNNLE-EAKRLGIKKAITANISMGAAFLLIYASYA 307
Query: 1192 MILL--PSSIIKPEXXXXXXXXXXXXXXXXFWAI-----YMSCFVENRMVSVERIKQFTE 1244
+ S +I E +++ + F R + E K
Sbjct: 308 LAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN 367
Query: 1245 IPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL-VLKGITLSIHGGEKIGVVGR 1303
PS ++ P GN++ ++ Y S + +LKG+ L + G+ + +VG
Sbjct: 368 KPSIDSFSKSGHKPDN---IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGN 424
Query: 1304 TGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI 1363
+G GKST +Q+ RL +P R G++ QEPVLF T+ NI
Sbjct: 425 SGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI 484
Query: 1364 DPIGQYSDE-----EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418
+Y E EI K+++ D + P + D+LV + G S GQ+Q + + R
Sbjct: 485 ----RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
Query: 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++++ ++L +DEAT+++D++++A +Q + + T I IAHR+ TV + D + D G
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG 600
Query: 1479 WAKEFGKPSRLLERPSLFGALV 1500
E G L+ ++ LV
Sbjct: 601 VIVEQGNHDELMREKGIYFKLV 622
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 135/255 (52%), Gaps = 9/255 (3%)
Query: 1260 PNWPAHGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317
PN GNV + Y R + P VL+G++L + G+ + +VG +G GKST++Q+ R
Sbjct: 1024 PNM-LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 1318 LVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEI 1374
+P R++ GI+ QEP+LF+ ++ NI D S EEI
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
++ + + + + PDK ++ V D G S GQ+Q + + R +++ +L +DEAT++
Sbjct: 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+D++++ +Q + + T I IAHR+ T+ + D ++V+ G KE G +LL +
Sbjct: 1202 LDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG 1261
Query: 1495 LFGAL--VQEYANRS 1507
++ ++ VQ A RS
Sbjct: 1262 IYFSMVSVQAGAKRS 1276
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 23/225 (10%)
Query: 651 VFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT 710
VF++ L+ ++LE+KKG A+VG+ G GKS+++ + ++G V + G
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 711 AYVAQTSWIQ-------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
W++ + +I ENI +G Y E+VR K+ + ++
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---KEANIHQF 1153
Query: 758 GD------QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
D T +G++G LSGGQKQRI +ARA+ + I LLD+ SA+D + + +E
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 812 CVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+ A +G+T I++ H++ + N DLI+V++ G + + G + LL
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 18/255 (7%)
Query: 641 DNIA--VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH 698
DNI +E ++ FS+ + LK +NL++K G A+VG G GKS+ + +
Sbjct: 382 DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441
Query: 699 KISGKVKVCGTTAYVAQTSWIQN--GTI-EENILFGLPM-NRAKYG-EVVRVCCLEKDLE 753
+ G V + G +++ G + +E +LF + +YG E V + +EK ++
Sbjct: 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVK 501
Query: 754 MMEYGD---------QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
D T +GERG LSGGQKQRI +ARA+ ++ I LLD+ SA+D +
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 805 GSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
+ + + + A +G+T I++ H++ + N D+I G+IV+ G ++ L+ +
Sbjct: 562 EA-VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 865 LVAAHETSMELVEVG 879
LV E +E+G
Sbjct: 621 LVMTQTAGNE-IELG 634
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 219/495 (44%), Gaps = 42/495 (8%)
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ 1084
++ +H P+ FFD +G +LSR + D + + V +++G+ +
Sbjct: 103 RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW 162
Query: 1085 YAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGK 1144
+W ++I +A + + R+++R V + + G + ++G
Sbjct: 163 NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGG 222
Query: 1145 QTTFYQENVNRVNGNLRMDFHNNGSNEWLGFR-LELLGSFTFCLATLFMILLPSSI--IK 1201
Q ++ ++V+ ++R S + + ++++ S LF +L +S+ I+
Sbjct: 223 QEV-ERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA-----LFAVLFLASVDSIR 276
Query: 1202 PEXXXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSE-----AAWK---- 1252
E F ++ + F R +K T + SE AA +
Sbjct: 277 AELTPGT-----------FTVVFSAMFGLMR-----PLKALTSVTSEFQRGMAACQTLFG 320
Query: 1253 ---MEDRLPPPNWPA---HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGS 1306
+E + A +G VD+ D+ Y+ L ++ SI G+ + +VGR+GS
Sbjct: 321 LMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGS 380
Query: 1307 GKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID-- 1364
GKST+ +F R + R F ++ Q LF T+ +NI
Sbjct: 381 GKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA 440
Query: 1365 PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
G+Y+ E+I ++ + + + P LD+++ ++G + S GQRQ + + R +L+ +
Sbjct: 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 1425 LLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFG 1484
+L +DEAT+++D++++ IQ + E T++ IAHR+ T+ D ++VVD G E G
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560
Query: 1485 KPSRLLERPSLFGAL 1499
+ + LL + + L
Sbjct: 561 RHADLLAQDGAYAQL 575
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 153/330 (46%), Gaps = 35/330 (10%)
Query: 550 SISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISL 609
SI+ +I M ++ L + L A+ L G+ + L P++
Sbjct: 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEF 308
Query: 610 SQAMISLARLDKYM---LSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNI 666
+ M + L M R+ ERV G V+V+D F++ + + L ++
Sbjct: 309 QRGMAACQTLFGLMDLETERDNGKYEAERVNG-----EVDVKDVTFTYQGKE-KPALSHV 362
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTT-------------AY 712
+ I +G A+VG GSGKS++ A++ + + SG + + G A
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 713 VAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770
V+Q + N TI NI + R + + R + +E M G T IGE G +L
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTIILVT 826
SGGQ+QR+ +ARA+ +D + +LD+ SA+D + + ++ AL K KT++++
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTES-----ERAIQAALDELQKNKTVLVIA 536
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALL 856
H++ + D ILV+ EG I++ GR+ LL
Sbjct: 537 HRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 6/241 (2%)
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXX 1324
H ++ +++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1325 XXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERC 1381
R + G++ Q+ VL ++ NI +P S E++ + +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 118
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
D ++ + +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALV 1500
I R + + T+I IAHR+ TV + DR+IV++ G E GK LL P SL+ L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 1501 Q 1501
Q
Sbjct: 239 Q 239
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHR 199
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 6/241 (2%)
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXX 1324
H ++ +++ RY+ ++P++L I LSI GE IG+VGR GSGKSTL ++ R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1325 XXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERC 1381
R + G++ Q+ VL ++ NI +P S E++ + +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 118
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
D ++ + +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALV 1500
I R + + T+I IAHR+ TV + DR+IV++ G E GK LL P SL+ L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 1501 Q 1501
Q
Sbjct: 239 Q 239
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHR 199
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 6/234 (2%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXX 1331
+++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1332 XXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVA 1388
R + G++ Q+ VL ++ NI +P S E++ + + D ++
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFIS 123
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++ I R +
Sbjct: 124 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALVQ 1501
+ T+I IAHR+ TV + DR+IV++ G E GK LL P SL+ L Q
Sbjct: 184 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ H+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHR 197
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 6/234 (2%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXX 1331
+++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1332 XXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVA 1388
R + G++ Q+ VL ++ NI +P S E++ + + D ++
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFIS 129
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++ I R +
Sbjct: 130 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALVQ 1501
+ T+I IAHR+ TV + DR+IV++ G E GK LL P SL+ L Q
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHR 203
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 2/225 (0%)
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXX 1339
++ +L+ I+ I G +G GKST+ + R +P+
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 1340 XXRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL 1397
RS+ G + Q+ + GT+R N+ G Y+DE++W+ L+ + V PD+L++
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
Query: 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTII 1457
V + G S GQRQ L + R L++ ++L +DEATAS+DS++++ +Q+ + T +
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTL 192
Query: 1458 SIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFGALVQE 1502
IAHR+ T++D D++ ++ G GK + L+ L+ V E
Sbjct: 193 VIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 119/220 (54%), Gaps = 18/220 (8%)
Query: 652 FSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT- 710
F++DD E+ L++I+ E + + A G G GKS++ + + +G++ + G
Sbjct: 9 FAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 711 ------------AYVAQTSWIQNGTIEENILFGLPMNRAKYG--EVVRVCCLEKDLEMME 756
+V+Q S I GTI EN+ +GL + +V+ + +E M
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 757 YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
TE+GERG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S + ++ +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKALDSL 185
Query: 817 LKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+KG+T +++ H++ + + D I + +G I SG++N L+
Sbjct: 186 MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 6/234 (2%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXX 1331
+++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1332 XXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVA 1388
R + G++ Q+ VL ++ NI +P S E++ + + D ++
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFIS 129
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ +++V + G S GQRQ + + R ++ + ++L D+AT+++D +++ I R +
Sbjct: 130 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALVQ 1501
+ T+I IAHR+ TV + DR+IV++ G E GK LL P SL+ L Q
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D SA+D + I + + KG+T+I++ H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK-ICKGRTVIIIAHR 203
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/560 (24%), Positives = 244/560 (43%), Gaps = 51/560 (9%)
Query: 333 TAFLAIVRLCVMYVGPVLIQRFVD--FTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFN 390
T + I++ + + P+LI+ +D + ++ + ++L + + +A F+ V
Sbjct: 19 TIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIE 78
Query: 391 FNSQKLGM----LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ- 445
F Q L I + LY LS + VGQ+++ + D +Q D +L
Sbjct: 79 FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTG 138
Query: 446 LHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQFNVMKNRDS 505
L +WL + I +AL +++ R + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAE 198
Query: 506 RMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFM-------YSISGNIIVM 558
+E + + V+K A ED+ K +F + +LT+ + YS + V
Sbjct: 199 VQGFLHERVQGISVVKSFAIEDNEAK---NFDKKNTNFLTRALKHTRWNAYSFAAINTVT 255
Query: 559 WSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLAR 618
P+++ + L + G++ ++L P+R S +L+Q+ S+ R
Sbjct: 256 DIGPIIV--IGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 619 LDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWD------DENGEECLKNINLEIKK 672
+ +L++E + G +E++ G D ++N LK+INL I+K
Sbjct: 314 V------FQLIDEDYDIKNGVGAQ-PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEK 366
Query: 673 GDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQTSWI 719
G+ A VG G GKS+L+ I SG++ + G V Q + +
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 720 QNGTIEENILFGLPMNRAKYGEVVRVCCLEK--DLEM-MEYGDQTEIGERGINLSGGQKQ 776
+ T++ENIL G P A EVV + D M + G TE+GERG+ LSGGQKQ
Sbjct: 427 FSDTVKENILLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVD 836
R+ +AR + I +LD+ SA+D + S I +E + K +T ++V H++ + + D
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHAD 543
Query: 837 LILVMREGMIVQSGRYNALL 856
I+V+ G IV++G + L+
Sbjct: 544 KIVVIENGHIVETGTHRELI 563
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 3/242 (1%)
Query: 1260 PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
P G +D+ + +Y N +LK I LSI GE + VG +G GKSTLI + R
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391
Query: 1320 EPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKS 1377
+ + R++ G++ Q+ +LF TV+ NI +G+ +DEE+ ++
Sbjct: 392 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEVVEA 450
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
+ D + P D+ V + G S GQ+Q L + R+ L + +L +DEAT+++D
Sbjct: 451 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFG 1497
++++ IQ + T + +AHR+ T+ D+++V++ G E G L+ + +
Sbjct: 511 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 570
Query: 1498 AL 1499
L
Sbjct: 571 HL 572
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 5/228 (2%)
Query: 1267 NVDLIDLQVRY-RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXX 1325
N++ D+ Y + LK I I G +VG TGSGKST+ ++ +R + +
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 1326 XXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQY--SDEEIWKSLERCQL 1383
RS GI+PQ+ +LF T++ NI G+ +DEE+ K+ + QL
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI-LYGKLDATDEEVIKATKSAQL 134
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
D + A P K D++V + G S G+RQ + + R +LK +++ DEAT+S+DS+T+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLE 1491
Q+ + + T+I IAHR+ T+ + +I+++ G E G LL+
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 16/228 (7%)
Query: 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+ +E D FS+ + LK+IN I G A+VG GSGKS++ A +L + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEG 74
Query: 703 KVKVCGTT-------------AYVAQTSWIQNGTIEENILFG-LPMNRAKYGEVVRVCCL 748
+K+ G V Q + + N TI+ NIL+G L + + + L
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQL 134
Query: 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+E + T +G +G+ LSGG++QRI +AR + +D I + D+ S++D+ T +
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYL 193
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
F++ V K +T+I++ H++ + + + I+++ +G IV+ G + LL
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 6/234 (2%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXX 1331
+++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1332 XXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVA 1388
R + G++ Q+ VL ++ NI +P S E++ + + D ++
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFIS 123
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++ I R +
Sbjct: 124 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALVQ 1501
+ T+I IA R+ TV + DR+IV++ G E GK LL P SL+ L Q
Sbjct: 184 KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ +
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAAR 197
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 6/234 (2%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXX 1331
+++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1332 XXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVA 1388
R + G++ Q+ VL ++ NI +P S E++ + + D ++
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFIS 129
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++ I R +
Sbjct: 130 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP-SLFGALVQ 1501
+ T+I IA R+ TV + DR+IV++ G E GK LL P SL+ L Q
Sbjct: 190 KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L NINL IK+G++ IVG GSGKS+L I +G+V + G +A +W++
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 721 -----------NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
N +I +NI P M+ K ++ + + G T +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + KG+T+I++ +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAAR 203
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + N D I+VM +G IV+ G++ LL
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 7/236 (2%)
Query: 1265 HGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
G ++ ++ Y R P + + +LSI G +VG +GSGKST++ + RL +P+
Sbjct: 339 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397
Query: 1323 XXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI----DPIGQYSDEEIWKSL 1378
RS+ G + QEP+LF ++ NI D + EEI +
Sbjct: 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVA 457
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
E + P +++V + G S GQ+Q + + R +LK+ ++L +DEAT+++D++
Sbjct: 458 EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517
Query: 1439 TDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+ +Q + T++ IAHR+ T+ + + V V+D G E+GK LL +P+
Sbjct: 518 NEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 573
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 18/231 (7%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
A+E ++ F++ ++ +L I G +TA+VG GSGKS++L+ +L SG
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400
Query: 704 VKVCGTTAYVAQTSWIQN--GTI-EENILFGLPM-NRAKYG----------EVVRVCCLE 749
+ + G W+++ GT+ +E ILF + YG E+ RV +
Sbjct: 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 750 KDLEMME---YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
+ + G T +GE+G+ LSGGQKQRI +ARA+ ++ I LLD+ SA+DA
Sbjct: 461 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-E 519
Query: 807 DIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
+ +E + + G+T++++ H++ + N +++ V+ +G I + G++ LL+
Sbjct: 520 YLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 1006 VRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNI------DL 1059
+R Y + G + + + SIL ++FFD T +G +++R S+D + +L
Sbjct: 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 140
Query: 1060 FLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDS 1119
G ++ I+++ F ++ A + +V P++ Y G YL R+LT++
Sbjct: 141 SDGLRAGAQASVGISMM--FFVSPNLATFVLSVVPPVSIIAVIY-GRYL---RKLTKVTQ 194
Query: 1120 ITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVN 1157
+ A E I V T+RAFGK+ T ++ ++V+
Sbjct: 195 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVD 232
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 1265 HGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
G ++ ++ Y R P + + +LSI G +VG +GSGKST++ + RL +P+
Sbjct: 370 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 428
Query: 1323 XXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI----DPIGQYSDEEIWKSL 1378
RS+ G + QEP+LF ++ NI D + EEI +
Sbjct: 429 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVA 488
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
E + P +++V + G S GQ+Q + + R +LK+ ++L +DEAT+++D++
Sbjct: 489 EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 548
Query: 1439 TDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+ +Q + T++ IAH + T+ + + V V+D G E+GK LL +P+
Sbjct: 549 NEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 604
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
A+E ++ F++ ++ +L I G +TA+VG GSGKS++L+ +L SG
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 704 VKVCGTTAYVAQTSWIQN--GTI-EENILFGLPM-NRAKYG----------EVVRVCCLE 749
+ + G W+++ GT+ +E ILF + YG E+ RV +
Sbjct: 432 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 750 KDLEMME---YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
+ + G T +GE+G+ LSGGQKQRI +ARA+ ++ I LLD+ SA+DA
Sbjct: 492 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-E 550
Query: 807 DIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
+ +E + + G+T++++ H + + N +++ V+ +G I + G++ LL+
Sbjct: 551 YLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 1005 VVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNI------D 1058
+R Y + G + + + SIL ++FFD T +G +++R S+D + +
Sbjct: 111 AIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTEN 170
Query: 1059 LFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLD 1118
L G ++ I+++ F ++ A + +V P++ Y G YL R+LT++
Sbjct: 171 LSDGLRAGAQASVGISMM--FFVSPNLATFVLSVVPPVSIIAVIY-GRYL---RKLTKVT 224
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVN 1157
+ A E I V T+RAFGK+ T ++ ++V+
Sbjct: 225 QDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVD 263
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 2/238 (0%)
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX 1323
A G+V+ ++ Y L+ I L I G+ + +VGR+GSGKST+ + R +
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1324 XXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERC 1381
R++ ++ Q LF TV +NI QYS E+I ++
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
D + + LD+++ ++G S GQRQ + + R +L+ S +L +DEAT+++D++++
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFGAL 1499
IQ + E T + IAHR+ T+ D ++VV+ G E G + LLE ++ L
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 160/328 (48%), Gaps = 43/328 (13%)
Query: 560 STPV--LISTLTFATALL---FGVPLDAGSVFTTTTIFK---ILQEPIRNFPQSMISLSQ 611
S P+ LI++L A L F +D+ + T T +F L P+++ +
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 612 AMISLARLDKYMLSRELVNES---VERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINL 668
M + L + S + +E +ER G VE R+ F++ + L+NINL
Sbjct: 311 GMAACQTLFTILDSEQEKDEGKRVIERATG-----DVEFRNVTFTYPGRD-VPALRNINL 364
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCG-------------TTAYVA 714
+I G A+VG GSGKS++ AS++ + I G++ + G A V+
Sbjct: 365 KIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVS 423
Query: 715 QTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772
Q + N T+ NI + +R + E R+ + M+ G T IGE G+ LSG
Sbjct: 424 QNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483
Query: 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTIILVTHQ 828
GQ+QRI +ARA+ +D I +LD+ SA+D + + ++ AL K +T +++ H+
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKNRTSLVIAHR 538
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + D I+V+ +G+IV+ G +N LL
Sbjct: 539 LSTIEKADEIVVVEDGVIVERGTHNDLL 566
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 986 PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGR 1045
P + IG+ +L + V +Y ++ V K ++ ++ P+SFFD +G
Sbjct: 68 PLVVIGLM----ILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGT 123
Query: 1046 ILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLA 1097
+LSR + D + + V +++G+FI+ Y+W ++I LA
Sbjct: 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLA 175
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 2/238 (0%)
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX 1323
A G+++ ++ Y L+ I L I G+ + +VGR+GSGKST+ + R +
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1324 XXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERC 1381
R++ ++ Q LF TV +NI +YS E+I ++
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
D + + LD+++ ++G S GQRQ + + R +L+ S +L +DEAT+++D++++
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFGAL 1499
IQ + E T + IAHR+ T+ D ++VV+ G E G S LL + ++ L
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 41/327 (12%)
Query: 560 STPV--LISTLTFATALL---FGVPLDAGSVFTTTTIFK---ILQEPIRNFPQSMISLSQ 611
S P+ LI++L A L F +D+ + T T +F L P+++ +
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 612 AMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEE--CLKNINLE 669
M + L + S + +E ++ ++ E R+ F++ G E L+NINL+
Sbjct: 311 GMAACQTLFAILDSEQEKDEGKRVIDRATGDL--EFRNVTFTYP---GREVPALRNINLK 365
Query: 670 IKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCG-------------TTAYVAQ 715
I G A+VG GSGKS++ AS++ + I G + + G A V+Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 716 TSWIQNGTIEENILFGL--PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGG 773
+ N T+ NI + +R + E R+ + M+ G T IGE G+ LSGG
Sbjct: 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTIILVTHQV 829
Q+QRI +ARA+ +D I +LD+ SA+D + + ++ AL K +T +++ H++
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKNRTSLVIAHRL 539
Query: 830 DFLHNVDLILVMREGMIVQSGRYNALL 856
+ D I+V+ +G+IV+ G ++ LL
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELL 566
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 986 PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGR 1045
P + IG+ +L + + +Y ++ V K ++ ++ P++FFD +G
Sbjct: 68 PLVVIGLM----ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGT 123
Query: 1046 ILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLA 1097
+LSR + D + + V +++G+FI+ Y+W +++ LA
Sbjct: 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 118/219 (53%), Gaps = 3/219 (1%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
L+ ++ ++ G+ + +VG +G+GKST++++ FR + S RS
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129
Query: 1345 FGIIPQEPVLFEGTVRSNIDPIGQYS--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
G++PQ+ VLF T+ NI G+ + ++E+ + + + D + A P+ + V + G
Sbjct: 130 IGVVPQDTVLFNDTIADNI-RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHR 1462
S G++Q + + R +LK ++ +DEAT+++D+ + IQ + + A T I +AHR
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248
Query: 1463 IPTVMDCDRVIVVDAGWAKEFGKPSRLLERPSLFGALVQ 1501
+ TV++ D+++V+ G E G+ LL R ++ + Q
Sbjct: 249 LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQ 287
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 652 FSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT- 710
FS+ D G E L++++ + G A+VG G+GKS++L + SG +++ G
Sbjct: 61 FSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118
Query: 711 ------------AYVAQTSWIQNGTIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMMEY 757
V Q + + N TI +NI +G + + + + +
Sbjct: 119 SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPE 178
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
G +T++GERG+ LSGG+KQR+ +AR + + I LLD+ SA+D I +
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VC 237
Query: 818 KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+T I+V H++ + N D ILV+++G IV+ GR+ ALL+ G
Sbjct: 238 ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 26/248 (10%)
Query: 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
+P H NV VL+G+T +++ G+ +VG GSGKST+ + L +P
Sbjct: 26 YPNHPNVQ--------------VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1322 SXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI------DPIGQYSDEEIW 1375
+ ++ + QEP+LF + R NI P + EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP----TMEEIT 127
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
D ++ P D+ V ++G+ S GQRQ + L R +++ RLL +D+AT+++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 1436 DSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP 1493
D+ +QR++ E E+A+ T++ I H++ ++ + G E G +L+ER
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 1494 SLFGALVQ 1501
+ ++V+
Sbjct: 248 GCYRSMVE 255
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 20/240 (8%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+ +D F++ + + L+ + + G +TA+VG GSGKS++ A + GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 705 KVCG-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
+ G A V Q + + ENI +GL R E + +E
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAVAMESG 134
Query: 752 ----LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ G TE+GE G LSGGQ+Q + LARA+ + + +LD SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 808 IFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866
+ + +T++L+THQ+ IL ++EG + + G + L+ G + ++V
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 26/248 (10%)
Query: 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
+P H NV VL+G+T +++ G+ +VG GSGKST+ + L +P
Sbjct: 26 YPNHPNVQ--------------VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1322 SXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI------DPIGQYSDEEIW 1375
+ ++ + QEP+LF + R NI P + EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP----TMEEIT 127
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
D ++ P D+ V ++G+ +VGQRQ + L R +++ RLL +D AT+++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1436 DSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP 1493
D+ +QR++ E E+A+ T++ I ++ ++ + G E G +L+ER
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 1494 SLFGALVQ 1501
+ ++V+
Sbjct: 248 GCYRSMVE 255
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 20/240 (8%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+ +D F++ + + L+ + + G +TA+VG GSGKS++ A + GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 705 KVCG-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
+ G A V Q + + ENI +GL R E + +E
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAVAMESG 134
Query: 752 ----LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ G TE+GE G L+ GQ+Q + LARA+ + + +LD+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 808 IFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866
+ + +T++L+T Q+ IL ++EG + + G + L+ G + ++V
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 26/248 (10%)
Query: 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
+P H NV VL+G+T +++ G+ +VG GSGKST+ + L +P
Sbjct: 26 YPNHPNVQ--------------VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1322 SXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI------DPIGQYSDEEIW 1375
+ ++ + QEP+LF + R NI P + EEI
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP----TMEEIT 127
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
D ++ P D+ V ++G+ S GQRQ + L R +++ RLL +D AT+++
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1436 DSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP 1493
D+ +QR++ E E+A+ T++ I ++ ++ + G E G +L+ER
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 1494 SLFGALVQ 1501
+ ++V+
Sbjct: 248 GCYRSMVE 255
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 20/240 (8%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+ +D F++ + + L+ + + G +TA+VG GSGKS++ A + GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 705 KVCG-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
+ G A V Q + + ENI +GL R E + +E
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAVAMESG 134
Query: 752 ----LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ G TE+GE G LSGGQ+Q + LARA+ + + +LD+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 808 IFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866
+ + +T++L+T Q+ IL ++EG + + G + L+ G + ++V
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 66/258 (25%), Positives = 126/258 (48%), Gaps = 12/258 (4%)
Query: 1259 PPN---WPAH--GNVDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTL 1311
PP+ P H G V D+ Y N P LVL+G+T ++ GE +VG GSGKST+
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 1312 IQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNI--DPIGQY 1369
+ L +P+ + + QEP +F +++ NI +
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP 119
Query: 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429
+ EEI + + ++ P D+ V ++G S GQRQ + L R +++ +L +D
Sbjct: 120 TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILD 179
Query: 1430 EATASVDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPS 1487
+AT+++D+ + ++++++ E E + +++ I + V D ++ ++ G +E G
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 1488 RLLERPSLFGALVQEYAN 1505
+L+E+ + A+VQ A+
Sbjct: 240 QLMEKKGCYWAMVQAPAD 257
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 18/241 (7%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+ +D F++ + L+ + ++ G++TA+VG GSGKS++ A + G++
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 705 KVCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCC---L 748
+ G A V Q + +++ENI +GL + E+
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-TQKPTMEEITAAAVKSGA 133
Query: 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+ + G TE+ E G LSGGQ+Q + LARA+ + + +LDD SA+DA++ +
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 809 FKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
+ + ++++L+T + + D IL + G I + G + L+ + A+V
Sbjct: 194 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 253
Query: 868 A 868
A
Sbjct: 254 A 254
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 17/216 (7%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA------ 711
NG+ LK++N E + G + +VG GSGK++LL IL + +G++ + G+ A
Sbjct: 22 NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLL-KILAGLLAAAGEIFLDGSPADPFLLR 80
Query: 712 ----YVAQ--TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
YV Q +S I T+EE++ F L + E+ + ++K LE++ G
Sbjct: 81 KNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRK--RIKKVLELV--GLSGLAAA 136
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825
+NLSGGQKQR+ +A + +D LD+ S +D + +IF+ +GK IILV
Sbjct: 137 DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILV 196
Query: 826 THQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861
TH++++L ++D IL + G I G + + D
Sbjct: 197 THELEYLDDMDFILHISNGTIDFCGSWEEFVEREFD 232
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 1275 VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXX 1334
V +R N VLK + G+ VVG+ GSGK+TL+++ L+ +
Sbjct: 17 VSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA----GEIFLDGS 72
Query: 1335 XXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK- 1393
R G + Q P S I IG +E++ SLE L + K K
Sbjct: 73 PADPFLLRKNVGYVFQNP-------SSQI--IGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 1394 ------LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
L L A N S GQ+Q L + ++ + +R L +DE + +D + EI +++
Sbjct: 124 VLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVL 183
Query: 1448 RE-EFAACTIISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLER 1492
+ II + H + + D D ++ + G G +ER
Sbjct: 184 ESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 83.6 bits (205), Expect = 7e-16, Method: Composition-based stats.
Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 28/207 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV------------KVCGTT 710
L NINL+IK G+ A++G GSGKS+LL +I G SGK+ K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770
+ + T+ +NI F L + +A E+ + +++ M + D+ + L
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV---REVAKMLHIDKL-LNRYPWQL 134
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTIIL 824
SGGQ+QR+ +ARA+ ++ ++ LLD+ S +DA + + VR LK G T +
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDA-----LLRLEVRAELKRLQKELGITTVY 189
Query: 825 VTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH Q + L D I V+REG I+Q G
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVG 216
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
L I L I GE + ++G +GSGKSTL+ + +P+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 1345 FGIIPQEPVLF-EGTVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
G++ Q L+ TV NI + + EEI K + AK +D L+
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVRE-------VAKMLHIDKLLNR 129
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QTDAEIQRIIREEFAACTI 1456
S GQ+Q + + R ++K +L +DE +++D+ + AE++R +++E T+
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTV 188
Query: 1457 ISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP 1493
+ + DR+ V+ G + G P + +P
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 6/190 (3%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
N A+ V + F + EN + +N ++ KGD+ A++G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 702 GKVKVCGTTAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
GK++V + +V Q S ++ + +L G + + + + + ++ ++Y +
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK-PKSHDYQVAMQALDYLNL 118
Query: 761 TEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-K 818
T + +R +LSGGQ+Q I +ARA+ +C + LLD+ SA+D + + A +
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 819 GKTIILVTHQ 828
T++ THQ
Sbjct: 179 NMTVVFTTHQ 188
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 20/164 (12%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXX 1336
Y + + + ++ G+ + V+G+ G GKSTL+ + + P
Sbjct: 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-------------IQ 59
Query: 1337 XXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPD---- 1392
G +PQ F ++ I + + + D A
Sbjct: 60 GKIEVYQSIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
L L + S GQRQL+ + R + +L+ +DE T+++D
Sbjct: 117 NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 22/208 (10%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------- 708
G ++ ++ +I++G++ ++G GSGK+++L I G G V + G
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 709 -TTAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEIGE 765
V Q + Q+ T+ +N+ FGL R E+ RV L + + + Y ++
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH-- 144
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI--FKECVRGALKGKTII 823
LSGGQ+QR+ LARA+ + L D+ F+A+D ++ F V + G T +
Sbjct: 145 ---ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSV 200
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH Q + L D +LV+ EG + Q G
Sbjct: 201 FVTHDQEEALEVADRVLVLHEGNVEQFG 228
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
++G++ I GE +G++G +GSGK+T++++ L P+ +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT--KGDVWIGGKRVTDLPPQKRN 88
Query: 1345 FGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403
G++ Q LF+ TV N+ G ++ + K ++++++ + +L+S
Sbjct: 89 VGLVFQNYALFQHMTVYDNVS-FG-LREKRVPKDEMDARVRELL--RFMRLESYANRFPH 144
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAACTIISIAH 1461
S GQ+Q + L R + ++L DE A++D+Q E++ +R+ + T + + H
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
Query: 1462 RIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP-SLFGA 1498
++ DRV+V+ G ++FG P + E+P +LF A
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV-------------- 706
+ L +++ + KGD+T I+G GSGKS+L+ I G + G+V
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 707 -CGTTAYVAQTSWIQNGTIEENILFG------LPMNRAKYGEVV--RVCCLEKDLEMMEY 757
G ++ T+ EN+L G P+N Y + + +EK +++E+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 758 GDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+ + +R LSGGQ + +++ RA+ + + ++D+ + V DIF +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 817 LKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGR 851
KG T +++ H++D + N +D + VM G I+ GR
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 37.7 bits (86), Expect = 0.044, Method: Composition-based stats.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 18/199 (9%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
L G+++S++ G+ ++G GSGKSTLI V ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 1345 FGII-----PQEPVLFEGTVRSNI---------DPIGQYSDEEIWKSLERCQLKDVVAAK 1390
+GI+ PQ L E TV N+ P+ ++ E K +
Sbjct: 82 YGIVRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 1391 PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIRE 1449
KL L S GQ +L+ +GR ++ + +++ MDE A V +I ++
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1450 EFAACTIISIAHRIPTVMD 1468
+ T + I HR+ V++
Sbjct: 200 KAKGITFLIIEHRLDIVLN 218
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV-------------- 706
+ L +++ + KGD+T I+G GSGKS+L+ I G + G+V
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 707 -CGTTAYVAQTSWIQNGTIEENILFG------LPMNRAKYGEVV--RVCCLEKDLEMMEY 757
G ++ T+ EN+L G P+N Y + + +EK +++E+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 758 GDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+ + +R LSGGQ + +++ RA+ + + ++D + V DIF +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 817 LKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGR 851
KG T +++ H++D + N +D + VM G I+ GR
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 37.7 bits (86), Expect = 0.044, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 14/197 (7%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
L G+++S++ G+ ++G GSGKSTLI V ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 1345 FGII-----PQ---EPVLFEGTVRSNIDPIGQYSDEEIWKSL----ERCQLKDVVAAKPD 1392
+GI+ PQ E + E + I+P + +K E K +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEF 1451
KL L S GQ +L+ +GR ++ + +++ MD+ A V +I ++ +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 1452 AACTIISIAHRIPTVMD 1468
T + I HR+ V++
Sbjct: 202 KGITFLIIEHRLDIVLN 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV-------------- 706
+ L +++ + KGD+T I+G GSGKS+L+ I G + G+V
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 707 -CGTTAYVAQTSWIQNGTIEENILFG------LPMNRAKYGEVV--RVCCLEKDLEMMEY 757
G ++ T+ EN+L G P+N Y + + +EK +++E+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 758 GDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+ + +R LSGGQ + +++ RA+ + + ++D+ + V DIF +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 817 LKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGR 851
KG T +++ H++D + N +D + VM G I+ GR
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 37.7 bits (86), Expect = 0.051, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 14/197 (7%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
L G+++S+ G+ ++G GSGKSTLI V ++
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 1345 FGII-----PQ---EPVLFEGTVRSNIDPIGQYSDEEIWKSL----ERCQLKDVVAAKPD 1392
+GI+ PQ E + E + I+P + +K E K +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEF 1451
KL L S GQ +L+ +GR ++ + +++ MDE A V +I ++ +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1452 AACTIISIAHRIPTVMD 1468
T + I HR+ V++
Sbjct: 202 KGITFLIIEHRLDIVLN 218
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC------------GTTA 711
K+INL+I +G+ VG G GKS+LL I G SG + + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVV--RVCCLEKDLEMMEYGDQTEIGERGIN 769
+ + ++ EN+ FGL + AK EV+ RV + + L++ D+ +
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKK-EVINQRVNQVAEVLQLAHLLDR-----KPKA 133
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH- 827
LSGGQ+QR+ + R + + ++LLD+ S +DA + E R + G+T+I VTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 828 QVDFLHNVDLILVMREGMIVQSGR 851
QV+ + D I+V+ G + Q G+
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXR 1342
+V K I L IH GE + VG +G GKSTL+++ L +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE 74
Query: 1343 SRFGIIPQEPVLFEG-TVRSNID-------PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
G++ Q L+ +V N+ + ++ + + E QL ++ KP L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QTDAEIQRIIREE 1450
S GQRQ + +GR ++ + +DE +++D+ Q EI R+ +
Sbjct: 135 -----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR- 182
Query: 1451 FAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
T+I + H ++ + D+++V+DAG + GKP L P+
Sbjct: 183 -LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC------------GTTA 711
K+INL+I +G+ VG G GKS+LL I G SG + + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVV--RVCCLEKDLEMMEYGDQTEIGERGIN 769
+ + ++ EN+ FGL + AK EV+ RV + + L++ D+ +
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKK-EVINQRVNQVAEVLQLAHLLDR-----KPKA 133
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH- 827
LSGGQ+QR+ + R + + ++LLD+ S +DA + E R + G+T+I VTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 828 QVDFLHNVDLILVMREGMIVQSGR 851
QV+ + D I+V+ G + Q G+
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXR 1342
+V K I L IH GE + VG +G GKSTL+++ L +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE 74
Query: 1343 SRFGIIPQEPVLFEG-TVRSNID-------PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
G++ Q L+ +V N+ + ++ + + E QL ++ KP L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QTDAEIQRIIREE 1450
S GQRQ + +GR ++ + +DE +++D+ Q EI R+ +
Sbjct: 135 -----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR- 182
Query: 1451 FAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
T+I + H ++ + D+++V+DAG + GKP L P+
Sbjct: 183 -LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 21/204 (10%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT----------- 710
L N++L+++ G+ I+G G+GK+ L I G SG++ + G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 711 AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN 769
A+V Q S + +++N+ FG+ M + K + RV +DL++ D+ +
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIK--DPKRVLDTARDLKIEHLLDRNPL-----T 127
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK-TIILVTH- 827
LSGG++QR+ LARA+ + I LLD+ SA+D T + + K K T++ +TH
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 828 QVDFLHNVDLILVMREGMIVQSGR 851
Q + D I V+ +G ++Q G+
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGK 211
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
A+ K++ L+ + S G++Q + L R ++ + ++L +DE +++D +T + ++
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1449 --EEFAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERP 1493
+ T++ I H + + DR+ VV G + GKP + E+P
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 22/204 (10%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC------------GTTA 711
K+INL+I +G+ VG G GKS+LL I G SG + + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVV--RVCCLEKDLEMMEYGDQTEIGERGIN 769
+ + ++ EN+ FGL + AK EV+ RV + + L++ D+ +
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKK-EVINQRVNQVAEVLQLAHLLDR-----KPKA 133
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH- 827
LSGGQ+QR+ + R + + ++LLD S +DA + E R + G+T+I VTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 828 QVDFLHNVDLILVMREGMIVQSGR 851
QV+ + D I+V+ G + Q G+
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXR 1342
+V K I L IH GE + VG +G GKSTL+++ L +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE 74
Query: 1343 SRFGIIPQEPVLFEG-TVRSNID-------PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
G++ Q L+ +V N+ + ++ + + E QL ++ KP L
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QTDAEIQRIIREE 1450
S GQRQ + +GR ++ + +D+ +++D+ Q EI R+ +
Sbjct: 135 -----------SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR- 182
Query: 1451 FAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
T+I + H ++ + D+++V+DAG + GKP L P+
Sbjct: 183 -LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSXXXXXXXXXXXXXXXXXXX 1341
VLKGI + I GE + V+G +GSGKST ++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1342 RSRFGIIPQEPVLFEG-TVRSNID--PIG------QYSDEEIWKSLERCQLKDVVAAKPD 1392
R G++ Q LF TV +NI P+ + ++ + + L++ LKD A PD
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EF 1451
L S GQ Q + + R + +++ DE T+++D + E+ ++++
Sbjct: 138 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1452 AACTIISIAHRIPTVMDC-DRVIVVDAGWAKEFGKPSRLLERPS 1494
T++ + H + + DRV+ +D G+ E GKP L +RP
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 230
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 34/221 (15%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLA--SILGEMHKISGKVKVCGTTAYVAQTSW 718
E LK IN+ I++G++ ++G GSGKS+ L ++L + + G++ + G T+
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE--GEIIIDGINLKAKDTNL 74
Query: 719 IQ----------------NGTIEENILFGLPMNRAKYGEVVRVCCLEK-DLEMMEYGDQT 761
+ + T+ NI PM VR EK + + ME D+
Sbjct: 75 NKVREEVGMVFQRFNLFPHMTVLNNITLA-PMK-------VRKWPREKAEAKAMELLDKV 126
Query: 762 EIGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
+ ++ +LSGGQ QR+ +ARA+ + I L D+ SA+D ++ + A
Sbjct: 127 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
+G T+++VTH++ F V D +L M G I++ G+ L +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 25/239 (10%)
Query: 1270 LIDLQVRYRSNTPL-VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSXXXX 1326
+ID+ +S L VLKGI + I GE + V+G +GSGKST ++ L +
Sbjct: 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83
Query: 1327 XXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG-TVRSNID--PIG------QYSDEEIWKS 1377
R G++ Q LF TV +NI P+ + ++ + +
Sbjct: 84 DGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMEL 143
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
L++ LKD A PD L S GQ Q + + R + +++ DE T+++D
Sbjct: 144 LDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 1438 QTDAEIQRIIRE-EFAACTIISIAHRIPTVMDC-DRVIVVDAGWAKEFGKPSRLLERPS 1494
+ E+ ++++ T++ + H + + DRV+ +D G+ E GKP L +RP
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 34/221 (15%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLA--SILGEMHKISGKVKVCGTTAYVAQTSW 718
E LK IN+ I++G++ ++G GSGKS+ L ++L + + G++ + G T+
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE--GEIIIDGINLKAKDTNL 95
Query: 719 IQ----------------NGTIEENILFGLPMNRAKYGEVVRVCCLEK-DLEMMEYGDQT 761
+ + T+ NI PM VR EK + + ME D+
Sbjct: 96 NKVREEVGMVFQRFNLFPHMTVLNNITLA-PMK-------VRKWPREKAEAKAMELLDKV 147
Query: 762 EIGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
+ ++ +LSGGQ QR+ +ARA+ + I L D+ SA+D ++ + A
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
+G T+++VTH++ F V D +L M G I++ G+ L +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.0 bits (162), Expect = 7e-11, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 38/218 (17%)
Query: 659 GEE---CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTA--- 711
GEE LKN+NL IK+G+ +I+G GSGKS++L +I+G + K G+V +
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 712 ---------------YVAQTSWIQNGTIEENILFGLPMNR--AKYGEVVRVCCLEKDLEM 754
Q + I T EN+ L A GE E+
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-------ERRKRA 125
Query: 755 MEYGDQTEIGERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+E E+ ER N LSGGQ+QR+ +ARA+ + I L D A+D+ TG I
Sbjct: 126 LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
Query: 810 KECVR-GALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ + GKT+++VTH ++ + I+ +++G +
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXX----XXXX 1340
LK + L+I GE + ++G +GSGKST++ + L +P+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1341 XRSRFGIIPQE----PVLFEGTVRSNID-PI-----GQYSDEEIWKSLERC----QLKDV 1386
R + G + Q+ P+L T N++ P+ G S EE K C +L++
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 1387 VAA-KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
A KP++L S GQ+Q + + R + + ++ D+ T ++DS+T +I +
Sbjct: 138 FANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 1446 IIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++++ E T++ + H I +R+I + G
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 38/218 (17%)
Query: 659 GEE---CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTA--- 711
GEE LKN+NL IK+G+ +I G GSGKS+ L +I+G + K G+V +
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXL-NIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 712 ---------------YVAQTSWIQNGTIEENILFGLPMNR--AKYGEVVRVCCLEKDLEM 754
Q + I T EN+ L A GE E+
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE-------ERRKRA 125
Query: 755 MEYGDQTEIGERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+E E+ ER N LSGGQ+QR+ +ARA+ + I L D+ A+D+ TG I
Sbjct: 126 LECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIX 185
Query: 810 KECVR-GALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ + GKT+++VTH ++ + I+ +++G +
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXX----XXXX 1340
LK + L+I GE + + G +GSGKST + + L +P+
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1341 XRSRFGIIPQE----PVLFEGTVRSNID-PI-----GQYSDEEIWKSLERCQLKDVVAAK 1390
R + G + Q+ P+L T N++ P+ G S EE K C K
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSGEERRKRALEC-------LK 130
Query: 1391 PDKLDSLVADSGDN-WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
+L+ A+ N S GQ+Q + + R + + ++ DE T ++DS+T +I +++++
Sbjct: 131 XAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 1450 --EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
E T++ + H I +R+I + G
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
+ L N++L + G + ++G G+GKS+L+ + G V V G S +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 721 NGTIEENILF---GLPMNRAKYGEVVRVCCLE---KD---------LEMMEYGDQTEIGE 765
+ ++F L +R +G V L+ KD L ++ GD+ +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD--S 136
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTII 823
NLSGGQKQR+ +ARA+ + + L D+ SA+D T I E ++ + G TI+
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-ELLKDINRRLGLTIL 195
Query: 824 LVTHQVDFLHNV-DLILVMREGMIVQ 848
L+TH++D + + D + V+ G +++
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIE 221
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 23/222 (10%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQ---VFFRLVEPSXXXXXXXXXXXXXXXXXXX 1341
L ++L + G+ GV+G +G+GKSTLI+ + R E S
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1342 RSRFGIIPQE-PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA- 1399
R + G+I Q +L TV N+ + L+ KD V + +L SLV
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNV---------ALPLELDNTP-KDEVKRRVTELLSLVGL 130
Query: 1400 -DSGD----NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFA 1452
D D N S GQ+Q + + R + + ++L DEAT+++D T I ++++
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 1453 ACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP 1493
TI+ I H + V CD V V+ G E S + P
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 26/222 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW---- 718
L +I+L + G++ I+G G GK++LL + G SG++ + G T + T+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 719 ------IQNG------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
+Q G T+ NI +GL + + + ++ M+E +E+ R
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE-----RQRIEAMLELTGISELAGR 134
Query: 767 GIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTII 823
+ LSGGQ+QR LARA+ D ++ LLD+ FSA+D I +E + AL+ GK+ +
Sbjct: 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIAALRANGKSAV 193
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864
V+H + + L D I VM++G I+Q+ + L D A
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDA 235
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX--XXXXXXXXXXXXXX 1337
NTP VL I+LS+ GE + ++G +G GK+TL++ +P
Sbjct: 16 NTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 1338 XXXXRSRFGIIPQEPVLFEG-TVRSNI-----DPIGQYSDE--EIWKSLERCQLKDVVAA 1389
R G + QE VLF TV NI + G+ + E I LE + ++
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR 134
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
P +L S GQ+Q L R + L+ +DE +++D Q ++R IRE
Sbjct: 135 YPHEL-----------SGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIRE 179
Query: 1450 EFAAC------TIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+ A + + ++H R + DR+ V+ G + P L +P+
Sbjct: 180 DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTT------- 710
G E LK I+L +KKG+ +I+G GSGKS+LL ILG + GKV + G
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 711 ----------AYVAQTSW-IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
+V Q + I T EN++ +PM K G+ + + + E G
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVI--VPM--LKMGKPKKEAKERGEYLLSELGL 130
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGA 816
++ + LSGG++QR+ +ARA+ + + D+ +D+ DIF + G
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG- 189
Query: 817 LKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
G +I++VTH+ + L M++G +V
Sbjct: 190 --GTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 38/198 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS---XXXXXXXXXXXXXXXXXX 1340
+LKGI+LS+ GE + ++G +GSGKSTL+ + L P+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1341 XRSR-FG-------IIPQ--------EPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
R+R G +IP+ P+L G + G+Y E+ L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-------GLG 131
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
D ++ KP +L S G++Q + + R + LLF DE T ++DS +
Sbjct: 132 DKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1445 RI-IREEFAACTIISIAH 1461
I ++ +I+ + H
Sbjct: 181 DIFLKINEGGTSIVMVTH 198
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 659 GEE---CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTA--- 711
GEE LKN+NL IK+G+ +I+G GSGKS++L +I+G + K G+V +
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 712 ---------------YVAQTSWIQNGTIEENILFGL--PMNRAKYGEVVRVCCLEKDLEM 754
Q + I T EN+ L A GE R LE L+M
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC-LKM 131
Query: 755 MEYGDQTEIGERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
E+ ER N LSGGQ+QR+ +ARA+ + I L D A+D+ TG I
Sbjct: 132 ------AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 810 KECVR-GALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ + GKT+++VTH ++ + I+ +++G +
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXX----XXXXXXXXXXXXXX 1339
LK + L+I GE + ++G +GSGKST++ + L +P+
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1340 XXRSRFGIIPQE----PVLFEGTVRSNID-PI-----GQYSDEEIWKSLERC----QLKD 1385
R + G + Q+ P+L T N++ P+ G S EE K C +L++
Sbjct: 80 IRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 1386 VVAA-KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
A KP++L S GQ+Q + + R + + ++ D+ T ++DS+T +I
Sbjct: 137 RFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 1445 RIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+++++ E T++ + H I +R+I + G
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
+ L N++L + G + ++G G+GKS+L+ + G V V G S +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 721 NGTIEENILF---GLPMNRAKYGEVVRVCCLE---KD---------LEMMEYGDQTEIGE 765
+ ++F L +R +G V L+ KD L ++ GD+ +
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD--S 159
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTII 823
NLSGGQKQR+ +ARA+ + + L D SA+D T I E ++ + G TI+
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL-ELLKDINRRLGLTIL 218
Query: 824 LVTHQVDFLHNV-DLILVMREGMIVQ 848
L+TH++D + + D + V+ G +++
Sbjct: 219 LITHEMDVVKRICDCVAVISNGELIE 244
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 23/222 (10%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQ---VFFRLVEPSXXXXXXXXXXXXXXXXXXX 1341
L ++L + G+ GV+G +G+GKSTLI+ + R E S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1342 RSRFGIIPQE-PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA- 1399
R + G+I Q +L TV N+ + L+ KD V + +L SLV
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNV---------ALPLELDNTP-KDEVKRRVTELLSLVGL 153
Query: 1400 -DSGD----NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFA 1452
D D N S GQ+Q + + R + + ++L D+AT+++D T I ++++
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1453 ACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP 1493
TI+ I H + V CD V V+ G E S + P
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-------------KV 706
++ L+N++L I +G+ + G GSGKS+LL + G + SG V +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G + + +E + F + + Y + V ++K +E + +
Sbjct: 80 IGIAFQYPEDQFFAERVFDE-VAFAV---KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
LSGG+K+R+ +A + + DI +LD+ +D +D+ + + GKT+IL++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 827 HQVD-FLHNVDLILVMREGMIVQSG 850
H ++ +++VD ++V+ +G V G
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDG 220
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 61/261 (23%)
Query: 1268 VDLIDLQVRYRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXX 1324
++++++ + TPL L+ ++L I+ GE + V G TGSGKSTL+Q+ L+EP+
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1325 XXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG------TVRSNIDPIGQYSDEEIWKSL 1378
VL++G +R NI QY +++ +
Sbjct: 63 D---------------------------VLYDGERKKGYEIRRNIGIAFQYPEDQFFA-- 93
Query: 1379 ERCQLKDVVAAK---PDK----------------LDSLVADSGDNWSVGQRQLLCLGRVM 1419
ER + A K PD+ DS S G+++ + + V+
Sbjct: 94 ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI 153
Query: 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVVDA 1477
+ +L +DE +D + ++ RI+ + + T+I I+H I TV++ DRV+V++
Sbjct: 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK 213
Query: 1478 GWAKEFGKPSRLLER--PSLF 1496
G G LE+ P F
Sbjct: 214 GKKVFDGTRMEFLEKYDPRFF 234
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 25/208 (12%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI- 719
+ L N++L + G + ++G G+GKS+L+ + G V V G S +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 720 ----QNGTIEENILFGLPMNRAKYGEVVRVCCLE---KD---------LEMMEYGDQTEI 763
Q G I ++ F L +R +G V L+ KD L ++ GD+ +
Sbjct: 102 KARRQIGXIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD- 158
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKT 821
NLSGGQKQR+ +ARA+ + + L D SA+D T I E ++ + G T
Sbjct: 159 -SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL-ELLKDINRRLGLT 216
Query: 822 IILVTHQVDFLHNV-DLILVMREGMIVQ 848
I+L+TH+ D + + D + V+ G +++
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIE 244
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQ---VFFRLVEPSXXXXXXXXXXXXXXXXXXX 1341
L ++L + G+ GV+G +G+GKSTLI+ + R E S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1342 RSRFGIIPQE-PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA- 1399
R + G I Q +L TV N+ + L+ KD V + +L SLV
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNV---------ALPLELDNTP-KDEVKRRVTELLSLVGL 153
Query: 1400 -DSGD----NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFA 1452
D D N S GQ+Q + + R + + ++L D+AT+++D T I ++++
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1453 ACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP 1493
TI+ I H V CD V V+ G E S + P
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-------------KV 706
++ L+N++L I +G+ + G GSGKS+LL + G + SG V +
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 81
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G + + +E + F + + Y + V ++K +E + +
Sbjct: 82 IGIAFQYPEDQFFAERVFDE-VAFAV---KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 137
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
LSGG+K+R+ +A + + DI +LD+ +D +D+ + + GKT+IL++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 827 HQVD-FLHNVDLILVMREGMIVQSG 850
H ++ +++VD ++V+ +G V G
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDG 222
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 61/263 (23%)
Query: 1266 GNVDLIDLQVRYRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
G ++++++ + TPL L+ ++L I+ GE + V G TGSGKSTL+Q+ L+EP+
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1323 XXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG------TVRSNIDPIGQYSDEEIWK 1376
VL++G +R NI QY +++ +
Sbjct: 63 SGD---------------------------VLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 1377 SLERCQLKDVVAAK---PDK----------------LDSLVADSGDNWSVGQRQLLCLGR 1417
ER + A K PD+ DS S G+++ + +
Sbjct: 96 --ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 153
Query: 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVV 1475
V++ +L +DE +D + ++ RI+ + + T+I I+H I TV++ DRV+V+
Sbjct: 154 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 213
Query: 1476 DAGWAKEFGKPSRLLER--PSLF 1496
+ G G LE+ P F
Sbjct: 214 EKGKKVFDGTRMEFLEKYDPRFF 236
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
+ + ++ E+K G+ A++G G GK++ L + G SG++ + +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 721 NG------------TIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEIGERG 767
G T+ ENI F L R EV RV + + L + D+ +
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----KP 131
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKT 821
LSGGQ+QR+ LARA+ + + L D+ S +DA+ + +R +K G T
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN-----LRMIMRAEIKHLQQELGIT 186
Query: 822 IILVTH-QVDFLHNVDLILVMREGMIVQSGRYNALLNS 858
+ VTH Q + + I V +G +VQ G + + +S
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSR 1344
+ G++ + GE + ++G +G GK+T + + + +P+
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--RE 76
Query: 1345 FGIIPQEPVLFEG-TVRSNID-PIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
G++ Q L+ TV NI P+ + S +E+ K + V A+ +D+L+
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRV-------VEIARKLLIDNLLDR 129
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ----TDAEIQRIIREEFAACTI 1456
S GQ+Q + L R ++K ++L DE +++D+ AEI+ + +E T
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITS 187
Query: 1457 ISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERPS 1494
+ + H M R+ V + G ++G P + + P
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 36/214 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
++ ++LE+K G+ ++G G GK++ L I G G++ +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 710 ----TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
A V Q+ + + T+ +NI F L + + E+ ++ E+ E TE+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID-----QRVREVAELLGLTELL 133
Query: 765 ERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
R LSGGQ+QR+ L RA+ + ++L+D+ S +DA + +R LK
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-----LRVRMRAELKKLQRQ 188
Query: 819 -GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T I VTH QV+ + D I VM G++ Q G
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 106/227 (46%), Gaps = 30/227 (13%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXX---XXXXXXX 1341
++ ++L + GE + ++G +G GK+T +++ L EPS
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 1342 RSR-FGIIPQEPVLF-EGTVRSNID-PIG------QYSDEEIWKSLERCQLKDVVAAKPD 1392
+ R ++ Q L+ TV NI P+ Q D+ + + E L +++ KP
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ----TDAEIQRIIR 1448
+L S GQRQ + LGR +++ ++ MDE +++D++ AE++++ R
Sbjct: 139 EL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 1449 EEFAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
+ T I + H ++ + DR+ V++ G ++ G P + ++P+
Sbjct: 188 Q--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708
+ +NL IK G+ ++G G GK++ L I G G++
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 86
Query: 709 TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER-G 767
+ + + W + T+ ENI F L + + E+ + +L +E E+ R
Sbjct: 87 SMVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----ELLNRYP 140
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK-TIILVT 826
LSGGQ+QR+ +ARA+ + D+ L+D+ S +DA + E + K K T I VT
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 827 H-QVDFLHNVDLILVMREGMIVQSG 850
H QV+ + D I VM G ++Q G
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIG 225
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGI 1347
+ L+I GE + ++G +G GK+T +++ L EP+ R+ +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 89
Query: 1348 IPQEPVLFEGTVRSNID---PIGQYSDEEIWKSL----ERCQLKDVVAAKPDKLDSLVAD 1400
V TV NI I ++ +EI K + E Q+++++ P +L
Sbjct: 90 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL------ 143
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ----TDAEIQRIIREEFAACTI 1456
S GQRQ + + R ++ +L MDE +++D++ AEI++ ++++ TI
Sbjct: 144 -----SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTI 197
Query: 1457 ISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
++ + DR+ V++ G + G P+ + RP+
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 235
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708
+ +NL IK G+ ++G G GK++ L I G G++
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85
Query: 709 TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER-G 767
+ + + W + T+ ENI F L + + E+ + +L +E E+ R
Sbjct: 86 SMVFQSYAVW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----ELLNRYP 139
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK-TIILVT 826
LSGGQ+QR+ +ARA+ + D+ L+D+ S +DA + E + K K T I VT
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 827 H-QVDFLHNVDLILVMREGMIVQSG 850
H QV+ + D I VM G ++Q G
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIG 224
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGI 1347
+ L+I GE + ++G +G GK+T +++ L EP+ R+ +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 88
Query: 1348 IPQEPVLFEGTVRSNID---PIGQYSDEEIWKSL----ERCQLKDVVAAKPDKLDSLVAD 1400
V TV NI I ++ +EI K + E Q+++++ P +L
Sbjct: 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL------ 142
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ----TDAEIQRIIREEFAACTI 1456
S GQRQ + + R ++ +L MDE +++D++ AEI++ ++++ TI
Sbjct: 143 -----SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTI 196
Query: 1457 ISIAHRIPTVMDCDRVIVVDAGWAKEFGKPSRLLERPS 1494
++ + DR+ V++ G + G P+ + RP+
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 35/222 (15%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-------------EMHKISGKVKVCG 708
L N+N+ I+ G+ I+G G+GK++ + I G + +GK+ V
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 709 TTAYVAQT--SWI--QNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEI 763
+ +W N T ENI F L + E+ RV + K L++ +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----L 134
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
LSGGQ+QR+ LARA+ +D + LLD+ FS +DA ++ R +K
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR-----MRDSARALVKEVQSR 189
Query: 819 -GKTIILVTHQ-VDFLHNVDLILVMREGMIVQSGRYNALLNS 858
G T+++V+H D D + V+ +G +VQ G+ L ++
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 17/227 (7%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXX---XXXXXXXX 1333
++ + L + ++I GE+ G++G +G+GK+T +++ L PS
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 1334 XXXXXXXXRSRFGIIPQEPVLFEG-TVRSNID-PIG--QYSDEEIWKSLERCQLKDVVAA 1389
+ G++ Q L+ T NI P+ + S EEI K +E A
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV-------A 125
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
K + ++ S GQ+Q + L R ++K LL +DE +++D++ + +++E
Sbjct: 126 KILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1450 --EFAACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP 1493
T++ ++H + DRV V+ G + GKP L + P
Sbjct: 186 VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 19/216 (8%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXX--XXXXXXXXXXXXXXXR 1342
LKGI ++I GE ++G G GKSTL Q F +++PS R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1343 SRFGIIPQEP--VLFEGTVRSNIDPIG----QYSDEEIWKSLERCQLKDVVAAKPDKLDS 1396
GI+ Q+P LF +V ++ G + ++EI K ++ A K ++
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS-FGAVNMKLPEDEIRKRVDN-------ALKRTGIEH 135
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAAC 1454
L S GQ++ + + V++ ++L +DE TA +D +EI +++ E +
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 1455 TIISIAHRIPTV-MDCDRVIVVDAGWAKEFGKPSRL 1489
TII H I V + CD V V+ G G P +
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 23/218 (10%)
Query: 652 FSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV------- 704
+++ +G LK IN+ IK+G++TAI+G G GKS+L + G + SG++
Sbjct: 13 LNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72
Query: 705 --------KVCGTTAYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEM 754
K+ + V Q Q + ++ +++ FG + E+ + D +
Sbjct: 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV----DNAL 128
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
G + + LS GQK+R+ +A + + + +LD+ + +D S+I K V
Sbjct: 129 KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 815 GALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSG 850
+ G TII+ TH +D + D + VM+EG ++ G
Sbjct: 189 MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 26/238 (10%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXX 1325
G V + DL R R +LKGI+ I GE G++G G+GK+T +++ L++PS
Sbjct: 14 GAVVVKDL--RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SG 70
Query: 1326 XXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPI-------GQY--SDEEIWK 1376
R +P+E G R N+ I G Y S EI +
Sbjct: 71 IVTVFGKNVVEEPHEVRKLISYLPEEA----GAYR-NMQGIEYLRFVAGFYASSSSEIEE 125
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+ER A + L + D +S G + L + R ++ + RL +DE T+ +D
Sbjct: 126 MVER-------ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 1437 SQTDAEIQRIIREEF-AACTIISIAHRIPTV-MDCDRVIVVDAGWAKEFGKPSRLLER 1492
E+++I+++ TI+ +H + V CDR+ ++ G E G L ER
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI 719
+E LK I+ EI++G++ ++G G+GK++ L I + SG V V G V + +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEV 86
Query: 720 QNGTIEENILFGLPMNRAKYG-----EVVRVCC-------------LEKDLEMMEYGDQT 761
+ ++ LP Y E +R +E+ E+ G++
Sbjct: 87 RK------LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK- 139
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKT 821
I +R S G +++ +ARA+ + + +LD+ S +D ++ K + + +G T
Sbjct: 140 -IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 822 IILVTH---QVDFLHNVDLILVMREGMIVQSGRYNAL 855
I++ +H +V+FL D I ++ G IV++G L
Sbjct: 199 ILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 24/244 (9%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-NGTIEEN 727
EI+KG++ IVG G GK++ + + G GKV+ T AY Q + GT+ E
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 437
Query: 728 ILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787
+ ++ +K L K L +++ D+ +LSGG+ QR+ +A + +D
Sbjct: 438 LS---KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRD 489
Query: 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKG--KTIILVTHQVDFLHNVDLILVMREGM 845
DIYLLD+ + +D + + +R ++ KT ++V H V + V L++ EG
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 548
Query: 846 IVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTM---PSGNSPKTPKSPQITSNLQE 902
+ GR AL GM G + L VG T P P+ K + Q+
Sbjct: 549 PGRHGR--ALPPMGMREG-------MNRFLASVGITFRRDPDSGRPRANKEGSVKDREQK 599
Query: 903 ANGE 906
A GE
Sbjct: 600 ARGE 603
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ- 828
LSGG+ QR+ +A A+ + Y D+ S +D + + R A +GK +++V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 829 --VDFLHNV 835
+D+L +V
Sbjct: 289 AVLDYLSDV 297
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 24/244 (9%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-NGTIEEN 727
EI+KG++ IVG G GK++ + + G GKV+ T AY Q + GT+ E
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 423
Query: 728 ILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787
+ ++ +K L K L +++ D+ +LSGG+ QR+ +A + +D
Sbjct: 424 LS---KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRD 475
Query: 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKG--KTIILVTHQVDFLHNVDLILVMREGM 845
DIYLLD+ + +D + + +R ++ KT ++V H V + V L++ EG
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
Query: 846 IVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTM---PSGNSPKTPKSPQITSNLQE 902
+ GR AL GM G + L VG T P P+ K + Q+
Sbjct: 535 PGRHGR--ALPPMGMREG-------MNRFLASVGITFRRDPDSGRPRANKEGSVKDREQK 585
Query: 903 ANGE 906
A GE
Sbjct: 586 ARGE 589
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ- 828
LSGG+ QR+ +A A+ + Y D+ S +D + + R A +GK +++V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 829 --VDFLHNV 835
+D+L +V
Sbjct: 275 AVLDYLSDV 283
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
D+ G+ ++LSGGQ+QR+ +ARA+ + D+ L D+ SA+D ++ + + A +
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 819 GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
GKT+++VTH++ F +V ++ + +G I + G
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTIISIAHR 1462
+ S GQ+Q + + R + +L DE T+++D + E+ RI+++ T++ + H
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Query: 1463 IPTVMDC-DRVIVVDAGWAKEFGKPSRLLERPS 1494
+ VI + G +E G P ++ P
Sbjct: 213 MGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQ 245
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 36/214 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
+K+++LEIK G+ ++G G GK++ L I G G++ +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 710 ----TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
A V Q+ + + T+ +NI F L + + E+ + + E+ E TE+
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDK-----RVREVAEXLGLTELL 136
Query: 765 ERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
R LSGGQ+QR+ L RA+ + ++L D+ S +DA + R LK
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK-----LRVKXRAELKKLQRQ 191
Query: 819 -GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T I VTH QV+ D I V +G + Q G
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVG 225
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXX 1327
V LI++ R+ T +K ++L I GE + ++G +G GK+T ++ L EP+
Sbjct: 7 VKLINIWKRFGDVT--AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIY 64
Query: 1328 XXXXXXX-----XXXXXXXRSRFGIIPQEPVLFEGTVRSNID-PIG------QYSDEEIW 1375
R + + TV NI P+ Q D+ +
Sbjct: 65 IEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVR 124
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+ E L +++ KP +L S GQRQ + LGR +++ ++ DE +++
Sbjct: 125 EVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDEPLSNL 173
Query: 1436 DS----QTDAEIQRIIREEFAACTIISIAH-RIPTVMDCDRVIVVDAGWAKEFGKPSRLL 1490
D+ + AE++++ R+ T I + H ++ DR+ V + G ++ G P +
Sbjct: 174 DAKLRVKXRAELKKLQRQ--LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVY 231
Query: 1491 ERP 1493
+P
Sbjct: 232 YKP 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 35/222 (15%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-------------EMHKISGKVKVCG 708
L N+N+ I+ G+ I+G G+GK++ + I G + +GK+ V
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 709 TTAYVAQT--SWI--QNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEI 763
+ +W N T ENI F L + E+ RV + K L++ +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----L 134
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
LSG Q+QR+ LARA+ +D + LLD+ FS +DA ++ R +K
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR-----MRDSARALVKEVQSR 189
Query: 819 -GKTIILVTHQ-VDFLHNVDLILVMREGMIVQSGRYNALLNS 858
G T+++V+H D D + V+ +G +VQ G+ L ++
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 17/227 (7%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXX---XXXXXXXX 1333
++ + L + ++I GE+ G++G +G+GK+T +++ L PS
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 1334 XXXXXXXXRSRFGIIPQEPVLFEG-TVRSNID-PIG--QYSDEEIWKSLERCQLKDVVAA 1389
+ G++ Q L+ T NI P+ + S EEI K +E A
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV-------A 125
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
K + ++ S Q+Q + L R ++K LL +DE +++D++ + +++E
Sbjct: 126 KILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1450 --EFAACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRLLERP 1493
T++ ++H + DRV V+ G + GKP L + P
Sbjct: 186 VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 26/245 (10%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ---NGTIE 725
EIKKG++ IVG G GK++ + + G GK++ T AY Q +I+ GT+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVY 365
Query: 726 ENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785
E + ++ +K L K L +++ D+ E+ E LSGG+ QR+ +A +
Sbjct: 366 ELLS---KIDASKLNSNFYKTELLKPLGIIDLYDR-EVNE----LSGGELQRVAIAATLL 417
Query: 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG-KTIILVTHQVDFLHNVDLILVMREG 844
+D DIYLLD+ + +D + + K KT ++V H V + V L + EG
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEG 477
Query: 845 MIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTM---PSGNSPKTPKSPQITSNLQ 901
+ GR AL G G + L +G T P P+ K + Q
Sbjct: 478 EPGKYGR--ALPPXGXREG-------XNRFLASIGITFRRDPDTGRPRANKEGSVKDREQ 528
Query: 902 EANGE 906
+ GE
Sbjct: 529 KEKGE 533
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 89/191 (46%), Gaps = 32/191 (16%)
Query: 670 IKKGDLTAIVGTVGSGKSS--------LLASILGEMHKISGKVKVCGTTAYVAQTSWIQN 721
+K+G + IVG G+GKS+ L+ ++ G+ G ++ ++N
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 722 GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT-------------EIGERGI 768
G I P+ + +Y +++ K +E+++ D+T + ER I
Sbjct: 104 GEIR-------PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 769 -NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
+LSGG+ QR+ +A A+ ++ Y D+ S +D + + R + +GK++++V H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 828 Q---VDFLHNV 835
+D+L ++
Sbjct: 217 DLAVLDYLSDI 227
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 21/193 (10%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E+RD +D + L+ I + I+KG++ G G GK++LL +I + + G++
Sbjct: 11 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 705 --------KVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME 756
KV G ++ + + E+ L + + YG V + LE +E
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA---SLYGVKVNKNEIMDALESVE 123
Query: 757 YGD-QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
D + ++GE LS G +R+QLA + + +IY+LDD A+D + + K +
Sbjct: 124 VLDLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE- 178
Query: 816 ALKGKTIILVTHQ 828
LK K I++++ +
Sbjct: 179 ILKEKGIVIISSR 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713
N++ E+ + D ++G G+GKS L I G + G+V++ G +V
Sbjct: 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 714 AQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772
Q + + ++ NI +GL N + RV + + L + D+ + LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGL-RNVERVERDRRVREMAEKLGIAHLLDR-----KPARLSG 129
Query: 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIIL-VTHQ-VD 830
G++QR+ LARA+ + LLD+ SAVD T + +E + IL VTH ++
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 831 FLHNVDLILVMREGMIVQSGRYNALLNS 858
D + VM G IV+ G+ L ++
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSA 217
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)
Query: 1300 VVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEG-T 1358
++G TG+GKS +++ +V+P R G +PQ+ LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1359 VRSNI-----DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413
V NI + D + + E+ + ++ KP +L S G+RQ +
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRV 135
Query: 1414 CLGRVMLKHSRLLFMDEATASVDSQTDA---EIQRIIREEFAACTIISIAHR-IPTVMDC 1469
L R ++ RLL +DE ++VD +T E R ++ EF I+ + H I M
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAAMLA 194
Query: 1470 DRVIVVDAGWAKEFGKPSRLL 1490
D V V+ G E GK L
Sbjct: 195 DEVAVMLNGRIVEKGKLKELF 215
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L+NINLE+ G+ I+G GSGK++LL +I G + SG + + G + +
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI-----NLSGGQKQR 777
+ E G+ +N Y + L++DL +E ++GE + LS GQ
Sbjct: 79 NLPEAYEIGVTVNDIVY-LYEELKGLDRDL-FLEMLKALKLGEEILRRKLYKLSAGQSVL 136
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDA---HTGSDIFKECVRGALKGKTIILVTHQVDFLH 833
++ + A+ +I LD+ F VDA H S KE GK ILVTH++D L+
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE------YGKEGILVTHELDMLN 189
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 35/232 (15%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E+RD W +GE LK +NL + KG++ A++G G+GKS+L + G+ +
Sbjct: 4 LEIRD---LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 705 KVCGTTAYVAQTSWIQNGTIEENILFGLPMN--------------RAKYGEVVRVC---- 746
++ + + S + + F P+ +AK G V V
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 747 CLEKDLEMMEYGDQTEIGERGIN--LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
++K LE++++ D++ + R +N SGG+K+R ++ + + + +LD+ S +D
Sbjct: 121 KVKKALELLDW-DESYL-SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI-- 176
Query: 805 GSDIFKECVRG--ALKGKTI--ILVTHQVDFLHNV--DLILVMREGMIVQSG 850
D K RG A++G +++TH L+ + D + VM +G +V +G
Sbjct: 177 --DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 24/216 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------AYVAQT 716
+ +++L I G++ AI+G G+GKS+LL + G + G+ + G +A+T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 717 SWIQNGTIEENILFG----LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-LS 771
+ E F + M RA YG L+ ++M D + +R LS
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ---QVMAQTDCLALAQRDYRVLS 143
Query: 772 GGQKQRIQLARAVYQ------DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK--TII 823
GG++QR+QLAR + Q LD+ SA+D + + +R + + +
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVC 202
Query: 824 LVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858
V H ++ D I+++ +G +V G +LN+
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 26/237 (10%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXX 1333
+ Y ++ ++L I GE + ++G G+GKSTL+++ + PS
Sbjct: 16 HLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75
Query: 1334 XX-XXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPD 1392
R+R + + F +V I Q S +R L+ V+A
Sbjct: 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMA---- 127
Query: 1393 KLDSLVADSGDN--WSVGQRQLLCLGRVMLK------HSRLLFMDEATASVDSQTDAEIQ 1444
+ D L D S G++Q + L RV+ + R LF+DE T+++D
Sbjct: 128 QTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187
Query: 1445 RIIR-----EEFAACTIISIAHRIP-TVMDCDRVIVVDAGWAKEFGKPSRLLERPSL 1495
R++R E A C ++ H + + DR++++ G G P +L +L
Sbjct: 188 RLLRQLTRQEPLAVCCVL---HDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETL 241
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 28/216 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-----KVCGTTAYVAQ-- 715
+K I+L++ +G + ++G G+GK++ L++I G + GK+ + A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 716 -TSWIQNG-------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER- 766
+ + G T+ EN+ G + K G +++DLE + + + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEG-------IKRDLEWI-FSLFPRLKERL 133
Query: 767 ---GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
G LSGG++Q + + RA+ + D+ + S++F+ + +G TI+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 824 LVTHQ-VDFLHNVDLILVMREGMIVQSGRYNALLNS 858
LV + L V+ G IV G+ + LL++
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX-XXXXXXXXXXXXXXXXXXRS 1343
+KGI L + G+ + ++G G+GK+T + LV R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1344 RFGIIPQEPVLF-EGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
++P+ +F E TV N+ G Y+ ++ K + L+ + + P +L + G
Sbjct: 82 GIALVPEGRRIFPELTVYENLX-XGAYNRKD--KEGIKRDLEWIFSLFP-RLKERLKQLG 137
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
S G++Q L +GR + +LL DE + + +E+ +I++
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK 184
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK----ISG 702
VR+G D I+L+I + +TAIVG SGKS+++ ++ + +SG
Sbjct: 16 VREGTIKAAD--------GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSG 67
Query: 703 KV--------------------KVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEV 742
+V K AQ S + E+ + + ++
Sbjct: 68 RVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHS 127
Query: 743 VRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802
+ + L M+ + + + LSGG KQR+ +A A+ D + +LD+ SA+D
Sbjct: 128 ELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDV 187
Query: 803 HTGSDIFKECVRGALKGK-TIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNA 854
T + I + K T+I VTH + + D + V+ G +V+ YN+
Sbjct: 188 LTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE---YNS 238
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 28/244 (11%)
Query: 1272 DLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SXX 1324
DL+ Y R T GI+L I +VG + SGKST+I+ + + P S
Sbjct: 9 DLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGR 68
Query: 1325 XXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD------------E 1372
+ R+ I P + ++ + I + D E
Sbjct: 69 VLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSE 128
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
I K+ E+ ++ V P ++++ S G +Q + + +L +L +DE T
Sbjct: 129 LIEKASEKLRM---VRLNP---EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPT 182
Query: 1433 ASVDSQTDAEI--QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGWAKEFGKPSRL 1489
+++D T A I ++ T+I + H I + D+V V+ G E+ ++
Sbjct: 183 SALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQI 242
Query: 1490 LERP 1493
+ P
Sbjct: 243 FKNP 246
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 35/230 (15%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV----KVCGTTAY 712
+ G+ LK I+ +I KGD + G G+GK++LL + SG V K G Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 713 VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN--- 769
A+T G + ++L K+ E RV + G +I + N
Sbjct: 91 SAETVRQHIGFVSHSLL-------EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 770 ------------------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD--AHTGSDIF 809
LS G+KQR+ +ARA+ + +LD+ + +D A
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 810 KECVRGALKGKTIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNALLNS 858
+ + + I VTH + + N IL++++G +Q G +L S
Sbjct: 204 LDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 701 SGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
S ++K+ YV S GT+ E IL + R K EV + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNE-ILTKID-ERGKKDEVKELLNM------------ 128
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
T + + N LSGG QR+ +A ++ ++ D+Y+ D S +D ++ K +R LK
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKN 187
Query: 820 KTIILVTHQ---VDFLHNVDLILVM 841
K +I+V H +D+L DLI ++
Sbjct: 188 KYVIVVDHDLIVLDYL--TDLIHII 210
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 31/190 (16%)
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-AYVAQTSWIQ-NGTI 724
N E K+G++ I+G G GK++ ++GE+ G V +Y Q + +GT+
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 725 EENILFGLPMNRAK---------YGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-LSGGQ 774
++ + N +K + EV + L + LE +N LSGG+
Sbjct: 348 QQYL-----ENASKDALSTSSWFFEEVTKRLNLHRLLE------------SNVNDLSGGE 390
Query: 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN 834
Q++ +A + ++ D+Y+LD S +D + K R + K + + +H+
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 835 --VDLILVMR 842
D I+V +
Sbjct: 451 YIADRIIVFK 460
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L L +K+ I G G GKS+L+ +I + C T +
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSD 510
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-LSGGQKQRIQLA 781
T + +F + G + +K ++E+G E+ I+ LSGG K ++ LA
Sbjct: 511 TSVLDFVF-------ESGVGTKEAIKDK---LIEFGFTDEMIAMPISALSGGWKMKLALA 560
Query: 782 RAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
RAV ++ DI LLD+ + +D + + C G T I ++H FL NV
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITISHDSVFLDNVCEY 614
Query: 839 LVMREGMIVQSGRYN 853
++ EG+ ++ + N
Sbjct: 615 IINYEGLKLRKYKGN 629
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTIILVTH 827
LSGGQK ++ LA +Q + +LD+ + +D + + K ALK +I++TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-----ALKEFEGGVIIITH 956
Query: 828 QVDFLHNV-DLILVMREGMIVQSGR 851
+F N+ + + +++G + SG
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMTPSGH 981
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ +IN + A++G G+GKS+L+ + GE+ SG+V
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 763 IGERGINLSGGQKQRIQLA---RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+G+ LSGG+ QRI+LA R + +Y+LD+ + + + ++ V+ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 820 KTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
T+I V H++ + D +L + G GR
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 37/225 (16%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQ 715
E++ G++ +VG G+GKS+LLA + G M G ++ G AY++Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 716 TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
Q + L +++ + R L + D+ +G LSGG+
Sbjct: 81 Q---QTPPFATPVWHYLTLHQH---DKTRTELLNDVAGALALDDK--LGRSTNQLSGGEW 132
Query: 776 QRIQLARAVYQDC-------DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
QR++LA V Q + LLD +++D S + K + +G I++ +H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Query: 829 VDF-LHNVDLILVMREGMIVQSGRYNALLNS-------GMDFGAL 865
++ L + +++ G ++ SGR +L GM+F L
Sbjct: 193 LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRL 237
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 64/234 (27%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKISGKVKVCGTTAYVAQTSWIQN 721
L+ ++L++ G++ AI+G GSGKS+L A++ G E ++++G
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG------------------- 57
Query: 722 GTIE---ENILFGLPMNRAKYG------------------------EVVRVCCLEKDLEM 754
GT+E +++L P +RA G VR ++ L+
Sbjct: 58 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR 117
Query: 755 MEYGDQTE-----------IGERGINL--SGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
++ D E + R +N+ SGG+K+R + + + ++ +LD+ S +D
Sbjct: 118 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
Query: 802 AHTGSDIFKECVRGALKGK-TIILVTHQVDFLHNV--DLILVMREGMIVQSGRY 852
+ + V GK + I+VTH L + D + V+ +G IV+SG +
Sbjct: 178 IDA-LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTL 1311
+L+G++L +H GE ++G GSGKSTL
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTL 43
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALKGKTIILVT 826
LSGG K ++ LARAV ++ DI LLD+ + +D + + C G T I ++
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 602
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYN 853
H FL NV ++ EG+ ++ + N
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGN 629
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTIILVTH 827
LSGGQK ++ LA +Q + +LD+ + +D + + K ALK +I++TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-----ALKEFEGGVIIITH 956
Query: 828 QVDFLHNV-DLILVMREGMIVQSG 850
+F N+ + + +++G SG
Sbjct: 957 SAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ +IN + A++G G+GKS+L+ + GE+ SG+V
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALKGKTIILVT 826
LSGG K ++ LARAV ++ DI LLD+ + +D + + C G T I ++
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 596
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYN 853
H FL NV ++ EG+ ++ + N
Sbjct: 597 HDSVFLDNVCEYIINYEGLKLRKYKGN 623
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTIILVTH 827
LSGGQK ++ LA +Q + +LD+ + +D + + K ALK +I++TH
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-----ALKEFEGGVIIITH 950
Query: 828 QVDFLHNV-DLILVMREGMIVQSG 850
+F N+ + + +++G SG
Sbjct: 951 SAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ +IN + A++G G+GKS+L+ + GE+ SG+V
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 64/234 (27%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKISGKVKVCGTTAYVAQTSWIQN 721
L+ ++L++ G++ AI+G GSGKS+L A++ G E ++++G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG------------------- 76
Query: 722 GTIE---ENILFGLPMNRAKYG------------------------EVVRVCCLEKDLEM 754
GT+E +++L P +RA G VR ++ L+
Sbjct: 77 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR 136
Query: 755 MEYGDQTE-----------IGERGINL--SGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
++ D E + R +N+ SGG+K+R + + + ++ +LD+ S +D
Sbjct: 137 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
Query: 802 AHTGSDIFKECVRGALKGK-TIILVTHQVDFLHNV--DLILVMREGMIVQSGRY 852
+ + V GK + I+VTH L + D + V+ +G IV+SG +
Sbjct: 197 IDA-LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTL 1311
+L+G++L +H GE ++G GSGKSTL
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 37/225 (16%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQ 715
E++ G++ +VG G+GKS+LLA + G M G ++ G AY++Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 716 TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
Q + L +++ + R L + D+ +G LSGG+
Sbjct: 81 Q---QTPPFATPVWHYLTLHQH---DKTRTELLNDVAGALALDDK--LGRSTNQLSGGEW 132
Query: 776 QRIQLARAVYQDC-------DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
QR++LA V Q + LLD ++D S + K + +G I++ +H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Query: 829 VDF-LHNVDLILVMREGMIVQSGRYNALLNS-------GMDFGAL 865
++ L + +++ G ++ SGR +L GM+F L
Sbjct: 193 LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRL 237
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCD---IYLLDDVFSAVDAHTGSDIFKECVRGALK 818
++G+ LSGG+ QR++LA +++ + +Y+LD+ + + + + R
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEV 878
G T++++ H +D + D I+ L G D G + A T E+ EV
Sbjct: 898 GDTVLVIEHNLDVIKTADYII--------------DLGPEGGDRGGQIVAVGTPEEVAEV 943
Query: 879 GKT 881
++
Sbjct: 944 KES 946
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI++EI +G L + G GSGKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
E LKN++++I G A+ G GSGKS+L+ +L
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCD---IYLLDDVFSAVDAHTGSDIFKECVRGALK 818
++G+ LSGG+ QR++LA +++ + +Y+LD+ + + + + R
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEV 878
G T++++ H +D + D I+ L G D G + A T E+ EV
Sbjct: 898 GDTVLVIEHNLDVIKTADYII--------------DLGPEGGDRGGQIVAVGTPEEVAEV 943
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI++EI +G L + G GSGKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
E LKN++++I G A+ G GSGKS+L+ +L
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 770 LSGGQKQRIQLARAVYQDCD--IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
LSGG+ QRI+LA + +Y+LD+ + + + R G T+I+V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 828 QVDFLHNVDLILVM------REGMIVQSGRYNALL-NSGMDFGALVAAHET 871
D + + D I+ + G IV SG Y+ LL N GA ++ E+
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRES 632
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCD---IYLLDDVFSAVDAHTGSDIFK--ECVRGAL 817
+G+ LSGG+ QR++LA + + +Y+LD+ + + DI K + G +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF---DDIRKLLNVINGLV 913
Query: 818 -KGKTIILVTHQVDFLHNVDLIL 839
KG T+I++ H +D + D I+
Sbjct: 914 DKGNTVIVIEHNLDVIKTSDWII 936
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 762 EIGERGINLSGGQKQRIQLA---RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
++G+ LSGG+ QRI+LA R +Y+LD+ + + + R +
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 819 GKTIILVTHQVDFLHNVDLIL 839
G T+I++ H +D + N D I+
Sbjct: 858 GNTVIVIEHNLDVIKNADHII 878
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 770 LSGGQKQRIQLARAVYQDCD--IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
LSGG+ QRI+LA + IY+LD+ + + K + G T+I+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 828 QVDFLHNVDLIL 839
+ + N D I+
Sbjct: 525 DEEVIRNADHII 536
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
LKNI++EI G + G GSGKSSL+ L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL 631
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI + I K L I G GSGKSSL
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCD---IYLLDDVFSAVDAHTGSDIFKECVRGALK 818
++G+ LSGG+ QR++LA +++ + +Y+LD+ + + + + R
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEV 878
G T++++ H +D + D I+ L G D G + A T E+ EV
Sbjct: 596 GDTVLVIEHNLDVIKTADYII--------------DLGPEGGDRGGQIVAVGTPEEVAEV 641
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI++EI +G L + G GSGKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
E LKN++++I G A+ G GSGKS+L+ +L
Sbjct: 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQ 715
E++ G++ +VG G+GKS+LLA G G ++ G AY++Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 716 TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
Q + L +++ + R L + D+ +G LSGG+
Sbjct: 81 Q---QTPPFATPVWHYLTLHQH---DKTRTELLNDVAGALALDDK--LGRSTNQLSGGEW 132
Query: 776 QRIQLARAVYQDC-------DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
QR++LA V Q + LLD+ +++D S + K + +G I+ +H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHD 192
Query: 829 VDF-LHNVDLILVMREGMIVQSGRYNALL 856
++ L + +++ G + SGR +L
Sbjct: 193 LNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 30/209 (14%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQ 715
E++ G++ +VG G+GKS+LLA G G ++ G AY++Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 716 TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
Q + L +++ + R L + D+ +G LSGG+
Sbjct: 81 Q---QTPPFATPVWHYLTLHQH---DKTRTELLNDVAGALALDDK--LGRSTNQLSGGEW 132
Query: 776 QRIQLARAVYQDC-------DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
QR++LA V Q + LLD+ +++D S + K +G I+ +H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHD 192
Query: 829 VDF-LHNVDLILVMREGMIVQSGRYNALL 856
++ L + +++ G + SGR +L
Sbjct: 193 LNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1UZ5|A Chain A, The Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikosii
Length = 402
Score = 34.3 bits (77), Expect = 0.57, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 649 DGVFSWDDENGEECLKN-INLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC 707
+G+F + +E LK I + GD+ I G G L AS++ E+ G+VKV
Sbjct: 222 EGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKDLTASVIEEL----GEVKVH 277
Query: 708 GTTAYVAQTSWIQNGTIEENILFGLP 733
G + + I G I+ +FGLP
Sbjct: 278 GIAIQPGKPTII--GVIKGKPVFGLP 301
>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|B Chain B, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|C Chain C, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|D Chain D, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
Length = 515
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 554 NIIVMWSTPVLISTLTFATALLFG--VPLDAG--SVFTTTTIFKILQEPIRNFPQSMISL 609
II W+ P+++ST A AL FG V L S FT T + +IL+E + P + +L
Sbjct: 167 GIITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEA--DLPPGVFNL 224
Query: 610 SQA 612
Q
Sbjct: 225 VQG 227
>pdb|3P4G|A Chain A, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|B Chain B, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|C Chain C, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|D Chain D, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
Length = 323
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQ 848
+IY+ DV +AVDA TG+D + + G L G DL I
Sbjct: 104 EIYIKGDVSAAVDAGTGND--EVYIGGNLSG----------------DLDAGTDNDNIQI 145
Query: 849 SGRYNALLNSGMDFGALVAAHE--------TSMELVEVGKTM 882
G NA LN+G L+ H+ T + VEVG+T+
Sbjct: 146 GGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTI 187
>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
Length = 397
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 227 AVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAF 266
AVN S G+++ ++ Y+ + S+ + + GF+ + IL K +
Sbjct: 228 AVNEVSAQGLEDSSEFYKEIKSRKNDIKGFSVSDILKKDY 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,812,680
Number of Sequences: 62578
Number of extensions: 1553696
Number of successful extensions: 4239
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3729
Number of HSP's gapped (non-prelim): 333
length of query: 1510
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1399
effective length of database: 8,027,179
effective search space: 11230023421
effective search space used: 11230023421
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)