Query 000440
Match_columns 1509
No_of_seqs 597 out of 3182
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5E-237 1E-241 2192.4 99.1 1361 4-1451 3-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 4E-202 8E-207 1903.3 74.0 768 5-777 28-818 (821)
3 KOG0161 Myosin class II heavy 100.0 2E-184 4E-189 1805.0 87.5 985 5-1013 25-1046(1930)
4 cd01384 MYSc_type_XI Myosin mo 100.0 1E-186 3E-191 1743.1 64.2 674 62-735 1-674 (674)
5 KOG0160 Myosin class V heavy c 100.0 4E-183 8E-188 1681.3 63.9 752 60-824 6-758 (862)
6 cd01380 MYSc_type_V Myosin mot 100.0 3E-182 6E-187 1714.7 61.9 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 7E-182 2E-186 1703.0 61.2 661 63-731 1-671 (671)
8 KOG0164 Myosin class I heavy c 100.0 2E-181 3E-186 1563.6 58.3 728 61-805 7-755 (1001)
9 cd01377 MYSc_type_II Myosin mo 100.0 2E-181 4E-186 1708.4 63.4 667 60-731 3-693 (693)
10 KOG0163 Myosin class VI heavy 100.0 2E-178 4E-183 1535.5 77.6 791 8-815 2-844 (1259)
11 cd01383 MYSc_type_VIII Myosin 100.0 3E-180 7E-185 1686.5 61.2 656 61-731 7-677 (677)
12 cd01378 MYSc_type_I Myosin mot 100.0 4E-180 8E-185 1691.6 61.7 662 63-731 1-674 (674)
13 cd01387 MYSc_type_XV Myosin mo 100.0 3E-179 6E-184 1681.3 62.2 661 62-731 1-677 (677)
14 cd01385 MYSc_type_IX Myosin mo 100.0 5E-179 1E-183 1682.5 64.0 663 62-732 7-689 (692)
15 cd01382 MYSc_type_VI Myosin mo 100.0 1E-178 3E-183 1684.4 63.4 665 60-731 2-716 (717)
16 cd01379 MYSc_type_III Myosin m 100.0 2E-176 5E-181 1645.4 62.7 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 4E-175 9E-180 1655.1 63.3 667 61-732 5-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 3E-175 7E-180 1508.7 53.2 695 60-765 16-725 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 5E-173 1E-177 1642.3 63.2 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 1E-172 2E-177 1630.7 60.5 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 3E-165 7E-170 1592.5 54.0 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 6E-114 1E-118 1091.9 28.6 751 61-826 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1.3E-32 2.8E-37 327.5 20.6 298 1101-1476 554-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 9.7E-28 2.1E-32 236.2 5.7 105 1327-1434 1-105 (105)
25 KOG0161 Myosin class II heavy 99.4 3.8E-09 8.2E-14 143.9 44.3 622 352-1028 323-998 (1930)
26 cd01363 Motor_domain Myosin an 98.6 4.1E-08 8.9E-13 107.5 6.7 88 132-230 8-98 (186)
27 PF02736 Myosin_N: Myosin N-te 98.3 1.5E-06 3.2E-11 70.3 6.7 41 10-50 1-41 (42)
28 KOG0520 Uncharacterized conser 98.3 1.1E-06 2.3E-11 112.2 8.0 123 734-856 808-938 (975)
29 KOG0160 Myosin class V heavy c 98.2 8.5E-06 1.8E-10 104.3 12.7 87 783-872 672-758 (862)
30 COG5022 Myosin heavy chain [Cy 98.2 0.00067 1.4E-08 89.9 29.0 77 786-862 747-823 (1463)
31 KOG0520 Uncharacterized conser 97.8 3.7E-05 7.9E-10 98.6 8.3 114 761-878 812-937 (975)
32 KOG1029 Endocytic adaptor prot 97.1 0.16 3.5E-06 63.3 26.0 25 1347-1371 1008-1032(1118)
33 KOG1029 Endocytic adaptor prot 97.1 0.039 8.5E-07 68.5 20.5 23 1349-1372 828-850 (1118)
34 KOG0164 Myosin class I heavy c 96.9 0.0041 9E-08 76.3 11.0 60 783-852 695-754 (1001)
35 KOG4229 Myosin VII, myosin IXB 96.9 0.00062 1.3E-08 90.0 3.9 267 605-873 644-1007(1062)
36 PF09726 Macoilin: Transmembra 96.8 0.12 2.5E-06 67.4 23.2 120 881-1006 459-578 (697)
37 PF09726 Macoilin: Transmembra 96.8 0.27 5.8E-06 64.1 26.2 104 926-1033 543-654 (697)
38 KOG0971 Microtubule-associated 96.6 2 4.3E-05 55.2 30.0 29 1297-1325 897-925 (1243)
39 KOG2128 Ras GTPase-activating 96.5 0.055 1.2E-06 72.2 17.7 114 742-855 513-645 (1401)
40 TIGR02169 SMC_prok_A chromosom 96.4 7.8 0.00017 55.0 40.0 8 520-527 38-45 (1164)
41 KOG0163 Myosin class VI heavy 96.3 1 2.2E-05 56.4 25.2 17 351-367 317-333 (1259)
42 PF00612 IQ: IQ calmodulin-bin 96.3 0.0038 8.3E-08 42.6 2.9 19 737-755 2-20 (21)
43 KOG0250 DNA repair protein RAD 96.3 4.2 9.1E-05 54.1 32.0 66 970-1035 398-463 (1074)
44 PRK09039 hypothetical protein; 96.2 0.15 3.2E-06 61.3 17.8 43 973-1015 137-179 (343)
45 KOG2128 Ras GTPase-activating 96.2 0.06 1.3E-06 71.8 15.4 141 740-880 481-647 (1401)
46 PF00612 IQ: IQ calmodulin-bin 96.2 0.005 1.1E-07 42.0 2.9 18 786-803 3-20 (21)
47 KOG0996 Structural maintenance 95.9 6.3 0.00014 52.7 30.8 49 1382-1433 1169-1220(1293)
48 KOG0933 Structural maintenance 95.8 4.4 9.5E-05 53.1 28.4 31 125-178 20-50 (1174)
49 KOG0933 Structural maintenance 95.8 2.9 6.2E-05 54.7 26.7 11 408-418 316-326 (1174)
50 KOG0925 mRNA splicing factor A 95.8 0.0073 1.6E-07 71.7 3.9 56 102-166 24-79 (699)
51 PF07888 CALCOCO1: Calcium bin 95.8 0.64 1.4E-05 58.0 20.5 11 663-673 43-53 (546)
52 KOG0971 Microtubule-associated 95.7 0.92 2E-05 58.0 21.5 60 973-1032 368-441 (1243)
53 PRK04863 mukB cell division pr 95.6 9 0.0002 54.6 33.2 12 666-677 125-136 (1486)
54 PF12718 Tropomyosin_1: Tropom 95.6 1.6 3.4E-05 45.8 19.9 28 922-949 36-63 (143)
55 KOG4643 Uncharacterized coiled 95.6 0.89 1.9E-05 59.0 20.9 49 885-937 404-452 (1195)
56 PRK11637 AmiB activator; Provi 95.5 0.9 2E-05 56.7 21.1 15 892-906 78-92 (428)
57 TIGR02168 SMC_prok_B chromosom 95.5 6.8 0.00015 55.5 32.7 8 1023-1030 408-415 (1179)
58 PF04091 Sec15: Exocyst comple 95.5 0.23 5.1E-06 58.9 15.0 132 1297-1429 177-311 (311)
59 COG1579 Zn-ribbon protein, pos 95.4 1 2.2E-05 50.7 18.5 23 922-944 53-75 (239)
60 PF08317 Spc7: Spc7 kinetochor 95.2 2.4 5.1E-05 50.9 22.7 8 671-678 14-21 (325)
61 KOG0250 DNA repair protein RAD 95.2 18 0.00038 48.6 33.7 45 1308-1352 914-958 (1074)
62 PF04849 HAP1_N: HAP1 N-termin 94.9 0.82 1.8E-05 53.0 16.5 59 971-1029 246-304 (306)
63 COG4372 Uncharacterized protei 94.9 11 0.00023 44.5 25.5 18 923-940 174-191 (499)
64 PF12128 DUF3584: Protein of u 94.9 29 0.00062 49.3 40.3 27 1424-1451 1054-1081(1201)
65 KOG1853 LIS1-interacting prote 94.8 4 8.7E-05 45.1 20.3 14 1019-1032 168-181 (333)
66 COG1196 Smc Chromosome segrega 94.8 30 0.00064 49.1 37.8 51 973-1023 439-489 (1163)
67 PF12128 DUF3584: Protein of u 94.7 26 0.00057 49.7 34.1 57 974-1030 470-526 (1201)
68 PF12718 Tropomyosin_1: Tropom 94.7 1.1 2.4E-05 46.9 15.6 24 922-945 43-66 (143)
69 PRK09039 hypothetical protein; 94.6 1.7 3.8E-05 52.3 19.0 56 971-1026 128-183 (343)
70 PF00261 Tropomyosin: Tropomyo 94.5 3.6 7.8E-05 47.0 20.6 142 887-1031 83-227 (237)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 2 4.2E-05 44.4 16.7 64 971-1034 64-131 (132)
72 PF07888 CALCOCO1: Calcium bin 94.4 19 0.00041 45.4 28.0 56 976-1031 286-341 (546)
73 smart00015 IQ Short calmodulin 94.2 0.039 8.4E-07 39.8 2.5 20 736-755 3-22 (26)
74 PRK04863 mukB cell division pr 94.2 29 0.00063 49.7 32.0 9 713-721 182-190 (1486)
75 smart00015 IQ Short calmodulin 94.1 0.043 9.4E-07 39.6 2.5 19 785-803 4-22 (26)
76 COG1196 Smc Chromosome segrega 94.0 42 0.00091 47.6 38.5 13 430-442 3-15 (1163)
77 KOG0977 Nuclear envelope prote 93.9 7.3 0.00016 49.0 22.7 72 883-954 57-139 (546)
78 COG3883 Uncharacterized protei 93.9 6.4 0.00014 45.0 20.4 60 883-946 39-98 (265)
79 PF00261 Tropomyosin: Tropomyo 93.9 0.69 1.5E-05 52.8 13.2 56 972-1027 91-146 (237)
80 PRK02224 chromosome segregatio 93.8 38 0.00083 46.6 35.1 11 716-726 132-142 (880)
81 PF13207 AAA_17: AAA domain; P 93.8 0.047 1E-06 55.1 3.2 23 151-173 1-23 (121)
82 PTZ00014 myosin-A; Provisional 93.8 0.1 2.3E-06 69.1 7.2 39 786-824 779-817 (821)
83 PF10473 CENP-F_leu_zip: Leuci 93.8 4.5 9.8E-05 41.9 17.3 23 926-948 50-72 (140)
84 KOG4360 Uncharacterized coiled 93.7 1.6 3.5E-05 52.8 15.9 56 972-1027 246-301 (596)
85 PF14662 CCDC155: Coiled-coil 93.6 9.8 0.00021 41.2 19.8 24 974-997 103-126 (193)
86 PRK02224 chromosome segregatio 93.6 28 0.0006 47.9 30.2 12 1437-1448 823-834 (880)
87 smart00787 Spc7 Spc7 kinetocho 93.6 11 0.00023 44.9 22.4 32 975-1006 227-258 (312)
88 smart00787 Spc7 Spc7 kinetocho 93.3 5.9 0.00013 47.0 19.8 9 670-678 9-17 (312)
89 PHA02562 46 endonuclease subun 93.3 8.5 0.00018 49.9 23.5 21 974-994 300-320 (562)
90 PHA02562 46 endonuclease subun 93.3 18 0.00039 46.9 26.4 32 975-1006 339-370 (562)
91 PF10168 Nup88: Nuclear pore c 93.2 5.8 0.00013 52.4 21.5 19 622-640 422-440 (717)
92 KOG0980 Actin-binding protein 93.2 26 0.00057 45.8 25.9 11 1413-1423 934-944 (980)
93 KOG0996 Structural maintenance 93.2 43 0.00094 45.3 35.5 58 892-949 443-500 (1293)
94 KOG0976 Rho/Rac1-interacting s 93.2 5 0.00011 50.9 19.2 59 891-953 101-159 (1265)
95 KOG0995 Centromere-associated 93.2 14 0.0003 46.3 22.8 45 985-1029 437-481 (581)
96 PRK03918 chromosome segregatio 92.9 12 0.00027 51.3 25.4 15 1437-1451 824-838 (880)
97 PF13401 AAA_22: AAA domain; P 92.7 0.08 1.7E-06 54.0 3.0 29 147-175 2-30 (131)
98 PF06785 UPF0242: Uncharacteri 92.7 19 0.0004 41.9 21.3 11 1158-1168 338-348 (401)
99 KOG0976 Rho/Rac1-interacting s 92.7 38 0.00082 43.6 25.6 18 893-910 288-305 (1265)
100 KOG1853 LIS1-interacting prote 92.2 10 0.00022 42.1 18.0 12 923-934 68-79 (333)
101 PF13238 AAA_18: AAA domain; P 92.1 0.11 2.4E-06 52.7 2.9 22 152-173 1-22 (129)
102 PF13191 AAA_16: AAA ATPase do 92.0 0.11 2.3E-06 56.4 3.0 33 144-176 19-51 (185)
103 PF14662 CCDC155: Coiled-coil 92.0 21 0.00046 38.7 22.3 23 971-993 121-143 (193)
104 KOG0999 Microtubule-associated 91.9 8 0.00017 47.4 18.1 28 1010-1037 165-192 (772)
105 cd02019 NK Nucleoside/nucleoti 91.8 0.15 3.2E-06 46.3 3.1 22 152-173 2-23 (69)
106 PF05667 DUF812: Protein of un 91.7 8.8 0.00019 49.5 19.8 35 1003-1037 449-483 (594)
107 PF15070 GOLGA2L5: Putative go 91.6 54 0.0012 42.7 28.0 60 971-1030 151-217 (617)
108 KOG0612 Rho-associated, coiled 91.6 36 0.00077 46.3 24.9 12 567-578 241-252 (1317)
109 cd00009 AAA The AAA+ (ATPases 91.4 0.25 5.4E-06 50.6 4.9 29 146-174 16-44 (151)
110 TIGR00606 rad50 rad50. This fa 91.4 66 0.0014 46.3 30.2 21 150-170 29-49 (1311)
111 TIGR02322 phosphon_PhnN phosph 91.3 0.15 3.3E-06 55.4 3.2 24 150-173 2-25 (179)
112 KOG4674 Uncharacterized conser 91.3 93 0.002 44.8 31.4 70 889-958 766-835 (1822)
113 COG0444 DppD ABC-type dipeptid 91.3 0.13 2.8E-06 59.8 2.7 28 147-174 29-56 (316)
114 TIGR03015 pepcterm_ATPase puta 91.1 0.34 7.4E-06 56.2 6.1 28 147-174 41-68 (269)
115 TIGR00150 HI0065_YjeE ATPase, 91.0 0.35 7.6E-06 49.9 5.2 27 147-173 20-46 (133)
116 KOG4673 Transcription factor T 90.8 57 0.0012 41.5 29.5 26 1007-1032 611-636 (961)
117 PRK07196 fliI flagellum-specif 90.6 0.29 6.3E-06 60.3 5.0 42 132-173 138-179 (434)
118 PF00004 AAA: ATPase family as 90.5 0.19 4E-06 51.2 2.8 23 152-174 1-23 (132)
119 TIGR00606 rad50 rad50. This fa 90.5 21 0.00045 51.3 23.8 11 354-364 172-182 (1311)
120 PF13851 GAS: Growth-arrest sp 90.5 33 0.00071 38.2 20.4 24 922-945 56-79 (201)
121 PRK13833 conjugal transfer pro 90.4 0.29 6.3E-06 58.2 4.7 34 140-175 137-170 (323)
122 PF01583 APS_kinase: Adenylyls 90.3 0.31 6.6E-06 51.7 4.2 29 149-177 2-30 (156)
123 KOG0982 Centrosomal protein Nu 90.3 32 0.00069 41.4 20.6 16 1015-1030 410-425 (502)
124 PRK06696 uridine kinase; Valid 90.2 0.37 8E-06 54.5 5.2 40 134-175 9-48 (223)
125 cd00820 PEPCK_HprK Phosphoenol 90.2 0.24 5.2E-06 49.0 3.1 23 148-170 14-36 (107)
126 PRK05480 uridine/cytidine kina 90.2 0.26 5.5E-06 55.1 3.8 27 147-173 4-30 (209)
127 cd01131 PilT Pilus retraction 90.2 0.21 4.6E-06 55.4 3.1 25 151-175 3-27 (198)
128 PF10481 CENP-F_N: Cenp-F N-te 90.1 10 0.00022 42.8 15.7 106 923-1031 27-132 (307)
129 COG5185 HEC1 Protein involved 90.1 53 0.0011 40.0 22.5 15 1245-1259 574-588 (622)
130 PF09730 BicD: Microtubule-ass 90.1 20 0.00044 46.9 20.8 12 1022-1033 170-181 (717)
131 PRK09270 nucleoside triphospha 90.0 0.49 1.1E-05 53.8 6.0 34 145-178 29-62 (229)
132 PRK00300 gmk guanylate kinase; 90.0 0.22 4.8E-06 55.4 3.1 26 148-173 4-29 (205)
133 cd01918 HprK_C HprK/P, the bif 90.0 0.26 5.5E-06 51.8 3.3 25 148-172 13-37 (149)
134 PF15070 GOLGA2L5: Putative go 89.9 56 0.0012 42.6 24.6 57 973-1029 174-230 (617)
135 KOG4673 Transcription factor T 89.8 68 0.0015 40.8 27.4 50 972-1021 703-752 (961)
136 cd02023 UMPK Uridine monophosp 89.8 0.24 5.1E-06 54.9 3.1 22 152-173 2-23 (198)
137 TIGR03420 DnaA_homol_Hda DnaA 89.7 0.48 1E-05 53.4 5.6 38 138-175 27-64 (226)
138 COG0194 Gmk Guanylate kinase [ 89.7 0.23 5.1E-06 53.4 2.8 25 149-173 4-28 (191)
139 PF00485 PRK: Phosphoribulokin 89.6 0.24 5.2E-06 54.7 2.9 26 152-177 2-27 (194)
140 cd01129 PulE-GspE PulE/GspE Th 89.6 0.38 8.2E-06 55.9 4.7 35 140-175 72-106 (264)
141 KOG0977 Nuclear envelope prote 89.5 24 0.00051 44.6 20.1 23 922-944 114-136 (546)
142 PRK12402 replication factor C 89.2 0.5 1.1E-05 56.8 5.6 56 117-174 6-61 (337)
143 TIGR03185 DNA_S_dndD DNA sulfu 89.2 31 0.00068 45.6 22.6 13 813-825 171-183 (650)
144 PRK10884 SH3 domain-containing 89.2 4.4 9.5E-05 45.1 12.3 25 975-999 134-158 (206)
145 cd01130 VirB11-like_ATPase Typ 89.1 0.5 1.1E-05 51.8 5.0 43 126-174 8-50 (186)
146 PHA02544 44 clamp loader, smal 89.1 0.43 9.4E-06 56.9 4.9 55 117-173 12-67 (316)
147 TIGR00235 udk uridine kinase. 89.0 0.34 7.4E-06 54.1 3.7 28 147-174 4-31 (207)
148 PF07111 HCR: Alpha helical co 88.9 58 0.0013 41.9 22.6 23 922-944 163-185 (739)
149 PF10473 CENP-F_leu_zip: Leuci 88.8 32 0.0007 35.8 17.7 27 922-948 53-79 (140)
150 smart00382 AAA ATPases associa 88.8 0.29 6.2E-06 49.6 2.7 28 149-176 2-29 (148)
151 COG1660 Predicted P-loop-conta 88.8 0.26 5.7E-06 55.3 2.5 19 151-169 3-21 (286)
152 PF09789 DUF2353: Uncharacteri 88.7 42 0.00091 39.8 20.3 22 922-943 80-101 (319)
153 PRK08233 hypothetical protein; 88.7 0.27 5.9E-06 53.3 2.5 25 150-174 4-28 (182)
154 TIGR02173 cyt_kin_arch cytidyl 88.6 0.3 6.5E-06 52.4 2.8 23 151-173 2-24 (171)
155 PF10168 Nup88: Nuclear pore c 88.6 55 0.0012 43.6 23.7 63 884-946 602-664 (717)
156 COG5185 HEC1 Protein involved 88.6 38 0.00083 41.1 19.7 27 974-1000 376-402 (622)
157 PTZ00301 uridine kinase; Provi 88.5 0.34 7.4E-06 54.2 3.2 23 152-174 6-28 (210)
158 COG4372 Uncharacterized protei 88.5 61 0.0013 38.6 25.1 10 1271-1280 471-480 (499)
159 PF09755 DUF2046: Uncharacteri 88.5 58 0.0012 38.3 26.5 58 975-1032 144-202 (310)
160 PRK05541 adenylylsulfate kinas 88.5 0.34 7.4E-06 52.5 3.1 29 147-175 5-33 (176)
161 KOG0980 Actin-binding protein 88.4 99 0.0021 40.9 30.5 36 1386-1424 850-886 (980)
162 cd02020 CMPK Cytidine monophos 88.4 0.35 7.7E-06 50.3 3.1 22 152-173 2-23 (147)
163 PRK07261 topology modulation p 88.3 0.37 7.9E-06 52.2 3.2 23 151-173 2-24 (171)
164 cd02028 UMPK_like Uridine mono 88.2 0.37 8E-06 52.6 3.2 24 152-175 2-25 (179)
165 PRK06547 hypothetical protein; 88.2 0.69 1.5E-05 50.1 5.2 29 145-173 11-39 (172)
166 KOG0964 Structural maintenance 88.2 55 0.0012 43.5 22.1 14 1413-1426 946-959 (1200)
167 PRK06762 hypothetical protein; 88.0 0.44 9.4E-06 51.1 3.6 24 150-173 3-26 (166)
168 PRK08972 fliI flagellum-specif 88.0 0.78 1.7E-05 56.4 6.0 40 133-172 146-185 (444)
169 cd02025 PanK Pantothenate kina 88.0 0.37 8.1E-06 54.4 3.1 23 152-174 2-24 (220)
170 PF03668 ATP_bind_2: P-loop AT 88.0 0.35 7.5E-06 55.8 2.8 20 150-169 2-21 (284)
171 cd00227 CPT Chloramphenicol (C 87.8 0.45 9.8E-06 51.6 3.5 25 149-173 2-26 (175)
172 PF07724 AAA_2: AAA domain (Cd 87.8 0.47 1E-05 51.3 3.6 24 151-174 5-28 (171)
173 PRK08118 topology modulation p 87.8 0.43 9.3E-06 51.4 3.3 25 150-174 2-26 (167)
174 PF10481 CENP-F_N: Cenp-F N-te 87.7 22 0.00047 40.3 16.1 23 972-994 108-130 (307)
175 PF00910 RNA_helicase: RNA hel 87.7 0.4 8.7E-06 47.5 2.8 25 152-176 1-25 (107)
176 PF04849 HAP1_N: HAP1 N-termin 87.7 21 0.00046 41.8 16.8 83 934-1026 205-287 (306)
177 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.6 23 0.0005 36.6 15.7 62 971-1032 57-122 (132)
178 TIGR02782 TrbB_P P-type conjug 87.6 0.75 1.6E-05 54.4 5.4 27 149-175 132-158 (299)
179 PRK00131 aroK shikimate kinase 87.5 0.49 1.1E-05 50.8 3.6 26 148-173 3-28 (175)
180 PF05911 DUF869: Plant protein 87.5 28 0.0006 46.2 19.8 24 1014-1037 739-762 (769)
181 PF04437 RINT1_TIP1: RINT-1 / 87.4 7.3 0.00016 49.6 14.6 124 1297-1426 353-491 (494)
182 PF05729 NACHT: NACHT domain 87.3 0.48 1E-05 50.1 3.4 27 151-177 2-28 (166)
183 KOG0963 Transcription factor/C 87.3 97 0.0021 39.5 25.4 29 884-912 191-219 (629)
184 PF08614 ATG16: Autophagy prot 87.3 3 6.6E-05 46.1 9.7 21 1009-1029 159-179 (194)
185 PF00769 ERM: Ezrin/radixin/mo 87.2 39 0.00085 38.8 18.8 11 1095-1105 188-198 (246)
186 PRK08084 DNA replication initi 87.2 0.94 2E-05 51.7 5.8 40 136-175 32-71 (235)
187 PRK14961 DNA polymerase III su 87.1 0.97 2.1E-05 55.1 6.2 57 117-175 7-64 (363)
188 PRK14737 gmk guanylate kinase; 87.1 0.42 9E-06 52.5 2.7 25 149-173 4-28 (186)
189 PF13245 AAA_19: Part of AAA d 87.0 0.8 1.7E-05 42.4 4.1 28 148-175 9-36 (76)
190 PLN03025 replication factor C 86.9 0.8 1.7E-05 54.8 5.3 56 117-174 4-59 (319)
191 COG4172 ABC-type uncharacteriz 86.9 0.33 7.2E-06 57.6 1.9 28 149-176 36-63 (534)
192 cd00071 GMPK Guanosine monopho 86.9 0.4 8.6E-06 49.9 2.3 22 152-173 2-23 (137)
193 PF12846 AAA_10: AAA-like doma 86.8 0.53 1.2E-05 55.3 3.7 29 149-177 1-29 (304)
194 PRK13851 type IV secretion sys 86.8 0.53 1.2E-05 56.6 3.6 26 149-174 162-187 (344)
195 PRK04778 septation ring format 86.8 25 0.00055 45.6 19.0 31 887-917 280-310 (569)
196 PRK00889 adenylylsulfate kinas 86.7 0.73 1.6E-05 49.9 4.4 29 148-176 3-31 (175)
197 PRK08472 fliI flagellum-specif 86.7 1.8 3.9E-05 53.4 8.2 41 133-173 141-181 (434)
198 cd02024 NRK1 Nicotinamide ribo 86.7 0.45 9.9E-06 52.1 2.7 22 152-173 2-23 (187)
199 TIGR01313 therm_gnt_kin carboh 86.7 0.39 8.5E-06 51.3 2.2 23 152-174 1-23 (163)
200 PF10174 Cast: RIM-binding pro 86.6 42 0.00091 44.7 20.8 152 876-1034 295-455 (775)
201 TIGR01843 type_I_hlyD type I s 86.6 79 0.0017 39.1 23.1 30 972-1001 202-231 (423)
202 PRK10078 ribose 1,5-bisphospho 86.6 0.42 9E-06 52.4 2.4 24 150-173 3-26 (186)
203 TIGR01420 pilT_fam pilus retra 86.6 0.47 1E-05 57.4 3.0 26 149-174 122-147 (343)
204 COG1340 Uncharacterized archae 86.5 72 0.0016 37.2 21.9 35 972-1006 157-191 (294)
205 KOG4643 Uncharacterized coiled 86.5 1.3E+02 0.0029 40.3 27.4 27 1009-1035 316-342 (1195)
206 TIGR02928 orc1/cdc6 family rep 86.4 0.74 1.6E-05 56.1 4.7 36 140-175 31-66 (365)
207 PRK13900 type IV secretion sys 86.3 0.71 1.5E-05 55.4 4.3 31 142-174 155-185 (332)
208 KOG0994 Extracellular matrix g 86.3 1.4E+02 0.0031 40.4 32.1 37 84-121 192-229 (1758)
209 TIGR02524 dot_icm_DotB Dot/Icm 86.2 0.52 1.1E-05 57.1 3.1 28 148-175 133-160 (358)
210 PRK09099 type III secretion sy 86.2 1.2 2.7E-05 55.0 6.4 36 138-173 152-187 (441)
211 COG4608 AppF ABC-type oligopep 86.2 0.5 1.1E-05 54.0 2.8 31 147-177 37-67 (268)
212 KOG0995 Centromere-associated 86.2 1.1E+02 0.0023 38.8 30.8 27 799-825 264-290 (581)
213 TIGR01843 type_I_hlyD type I s 86.1 22 0.00048 44.1 17.7 61 972-1032 209-270 (423)
214 cd02027 APSK Adenosine 5'-phos 86.0 0.6 1.3E-05 49.3 3.1 24 152-175 2-25 (149)
215 PRK06315 type III secretion sy 85.9 1 2.2E-05 55.8 5.4 36 138-173 153-188 (442)
216 PF15254 CCDC14: Coiled-coil d 85.8 1.3E+02 0.0028 39.4 23.4 52 978-1029 499-550 (861)
217 PRK12377 putative replication 85.7 1.3 2.9E-05 50.7 6.0 44 131-176 85-128 (248)
218 PF05667 DUF812: Protein of un 85.6 44 0.00095 43.3 19.9 15 549-565 79-93 (594)
219 PRK14738 gmk guanylate kinase; 85.6 0.63 1.4E-05 52.0 3.2 26 147-172 11-36 (206)
220 COG3883 Uncharacterized protei 85.6 56 0.0012 37.6 18.4 60 881-944 44-103 (265)
221 cd01120 RecA-like_NTPases RecA 85.6 0.7 1.5E-05 48.6 3.5 25 152-176 2-26 (165)
222 TIGR00554 panK_bact pantothena 85.3 1.3 2.9E-05 51.9 5.8 29 147-175 60-88 (290)
223 PF00038 Filament: Intermediat 85.3 89 0.0019 37.2 23.8 160 875-1034 61-228 (312)
224 TIGR03263 guanyl_kin guanylate 85.3 0.49 1.1E-05 51.3 2.2 24 150-173 2-25 (180)
225 PRK12704 phosphodiesterase; Pr 85.2 1.2E+02 0.0027 38.8 24.1 13 1385-1397 416-428 (520)
226 TIGR02525 plasmid_TraJ plasmid 85.2 0.62 1.4E-05 56.6 3.2 27 149-175 149-175 (372)
227 PRK08903 DnaA regulatory inact 85.2 1.5 3.2E-05 49.7 6.1 30 147-176 40-69 (227)
228 PRK00440 rfc replication facto 85.1 1.1 2.3E-05 53.5 5.2 55 118-174 9-63 (319)
229 COG0529 CysC Adenylylsulfate k 85.1 1.3 2.7E-05 47.4 4.8 34 145-178 19-52 (197)
230 PRK10751 molybdopterin-guanine 85.0 0.73 1.6E-05 49.8 3.2 28 150-177 7-34 (173)
231 COG4026 Uncharacterized protei 85.0 9.7 0.00021 41.5 11.4 14 1024-1037 215-228 (290)
232 PF09304 Cortex-I_coil: Cortex 85.0 41 0.0009 33.0 14.8 27 887-913 7-33 (107)
233 PRK06217 hypothetical protein; 85.0 0.62 1.4E-05 50.9 2.8 24 151-174 3-26 (183)
234 COG1102 Cmk Cytidylate kinase 85.0 0.7 1.5E-05 48.5 2.9 24 152-175 3-26 (179)
235 COG0572 Udk Uridine kinase [Nu 84.9 0.69 1.5E-05 51.5 3.0 23 152-174 11-33 (218)
236 TIGR02680 conserved hypothetic 84.9 50 0.0011 47.5 22.0 24 976-999 336-359 (1353)
237 PF07111 HCR: Alpha helical co 84.9 1.3E+02 0.0028 39.0 22.6 39 881-919 100-138 (739)
238 PRK03846 adenylylsulfate kinas 84.9 1.1 2.4E-05 49.6 4.8 31 146-176 21-51 (198)
239 PF00437 T2SE: Type II/IV secr 84.8 0.61 1.3E-05 54.3 2.8 28 148-175 126-153 (270)
240 PTZ00112 origin recognition co 84.8 1.7 3.7E-05 57.0 6.7 44 132-176 764-808 (1164)
241 KOG0978 E3 ubiquitin ligase in 84.8 1.4E+02 0.0031 39.1 34.3 64 972-1035 558-621 (698)
242 PRK14956 DNA polymerase III su 84.8 1.1 2.5E-05 55.7 5.2 55 118-176 10-67 (484)
243 cd00464 SK Shikimate kinase (S 84.7 0.68 1.5E-05 48.7 2.9 23 151-173 1-23 (154)
244 KOG2129 Uncharacterized conser 84.7 99 0.0021 37.2 23.4 29 971-999 251-279 (552)
245 PF13671 AAA_33: AAA domain; P 84.7 0.57 1.2E-05 48.6 2.2 23 152-174 2-24 (143)
246 KOG1103 Predicted coiled-coil 84.7 87 0.0019 36.5 20.9 193 828-1020 99-292 (561)
247 PRK07721 fliI flagellum-specif 84.5 3.2 6.9E-05 51.7 8.9 41 133-173 142-182 (438)
248 KOG0946 ER-Golgi vesicle-tethe 84.4 61 0.0013 42.2 19.5 30 552-581 388-417 (970)
249 KOG0018 Structural maintenance 84.4 1.7E+02 0.0037 39.7 27.7 39 785-823 211-249 (1141)
250 TIGR02902 spore_lonB ATP-depen 84.4 1.2 2.5E-05 57.2 5.2 30 144-173 81-110 (531)
251 PF05701 WEMBL: Weak chloropla 84.3 1.4E+02 0.003 38.5 24.2 180 846-1030 141-331 (522)
252 PRK00411 cdc6 cell division co 84.3 1.1 2.4E-05 55.1 4.9 35 142-176 48-82 (394)
253 COG1125 OpuBA ABC-type proline 84.2 0.66 1.4E-05 52.2 2.5 25 150-174 28-52 (309)
254 PF08614 ATG16: Autophagy prot 84.2 6.3 0.00014 43.6 10.3 40 974-1013 138-177 (194)
255 KOG2129 Uncharacterized conser 84.2 1E+02 0.0023 37.0 20.5 23 980-1002 253-275 (552)
256 PF03205 MobB: Molybdopterin g 83.9 0.93 2E-05 47.3 3.4 27 151-177 2-28 (140)
257 COG1123 ATPase components of v 83.7 0.63 1.4E-05 58.3 2.3 29 148-176 34-62 (539)
258 KOG1937 Uncharacterized conser 83.7 78 0.0017 38.6 18.9 15 663-677 75-89 (521)
259 KOG0612 Rho-associated, coiled 83.6 1.9E+02 0.0042 39.8 26.9 14 1018-1031 677-690 (1317)
260 PRK13894 conjugal transfer ATP 83.6 1.5 3.3E-05 52.3 5.4 27 149-175 148-174 (319)
261 PF03266 NTPase_1: NTPase; In 83.6 0.9 1.9E-05 49.0 3.2 24 152-175 2-25 (168)
262 cd02021 GntK Gluconate kinase 83.3 0.8 1.7E-05 48.1 2.6 22 152-173 2-23 (150)
263 TIGR01005 eps_transp_fam exopo 83.2 1.2E+02 0.0026 41.0 23.8 12 696-707 85-96 (754)
264 PRK05342 clpX ATP-dependent pr 83.2 1.9 4E-05 53.3 6.1 63 111-173 59-132 (412)
265 KOG0946 ER-Golgi vesicle-tethe 83.2 64 0.0014 42.0 19.0 21 354-374 143-163 (970)
266 cd02029 PRK_like Phosphoribulo 83.2 1 2.2E-05 51.8 3.5 24 152-175 2-25 (277)
267 PRK13764 ATPase; Provisional 83.1 0.98 2.1E-05 58.0 3.7 27 149-175 257-283 (602)
268 COG2433 Uncharacterized conser 83.1 18 0.00039 45.5 14.1 23 922-944 437-459 (652)
269 PF02367 UPF0079: Uncharacteri 83.0 0.98 2.1E-05 45.9 3.0 27 147-173 13-39 (123)
270 COG2884 FtsE Predicted ATPase 83.0 0.87 1.9E-05 49.2 2.7 24 148-171 27-50 (223)
271 PRK13342 recombination factor 82.9 1.4 3.1E-05 54.7 5.1 37 137-173 24-60 (413)
272 PF15619 Lebercilin: Ciliary p 82.9 82 0.0018 34.9 23.4 24 1009-1032 165-188 (194)
273 KOG0982 Centrosomal protein Nu 82.9 1E+02 0.0022 37.3 19.4 18 1019-1036 407-424 (502)
274 PRK06645 DNA polymerase III su 82.8 1.5 3.3E-05 55.4 5.3 56 118-176 13-70 (507)
275 PRK04182 cytidylate kinase; Pr 82.8 0.86 1.9E-05 49.2 2.7 23 151-173 2-24 (180)
276 PRK05057 aroK shikimate kinase 82.8 1 2.2E-05 48.8 3.2 25 149-173 4-28 (172)
277 KOG4360 Uncharacterized coiled 82.8 35 0.00077 42.0 15.9 91 930-1030 200-290 (596)
278 PF03215 Rad17: Rad17 cell cyc 82.7 1.2 2.7E-05 56.4 4.4 58 116-173 9-69 (519)
279 PF09730 BicD: Microtubule-ass 82.7 79 0.0017 41.7 20.3 20 1017-1036 158-177 (717)
280 smart00333 TUDOR Tudor domain. 82.7 3.6 7.7E-05 35.5 6.0 51 6-56 2-54 (57)
281 PRK09825 idnK D-gluconate kina 82.5 1.1 2.3E-05 48.8 3.3 26 149-174 3-28 (176)
282 PRK01156 chromosome segregatio 82.5 65 0.0014 44.4 21.3 20 151-170 25-44 (895)
283 PF07475 Hpr_kinase_C: HPr Ser 82.5 0.98 2.1E-05 48.3 2.8 23 149-171 18-40 (171)
284 COG0563 Adk Adenylate kinase a 82.4 1 2.2E-05 49.1 3.0 23 151-173 2-24 (178)
285 PF05622 HOOK: HOOK protein; 82.4 0.41 8.8E-06 63.7 0.0 90 922-1011 309-401 (713)
286 TIGR01360 aden_kin_iso1 adenyl 82.4 1 2.2E-05 49.1 3.1 23 151-173 5-27 (188)
287 PRK06893 DNA replication initi 82.4 2.3 5E-05 48.3 6.1 39 137-176 28-66 (229)
288 TIGR02533 type_II_gspE general 82.3 1.2 2.6E-05 56.2 4.1 35 139-174 233-267 (486)
289 PF05010 TACC: Transforming ac 82.3 90 0.0019 34.9 19.7 41 974-1014 162-202 (207)
290 PF13555 AAA_29: P-loop contai 82.3 1.4 3.1E-05 39.0 3.4 21 151-171 25-45 (62)
291 PRK14964 DNA polymerase III su 82.3 1.6 3.4E-05 55.0 5.0 57 118-177 5-63 (491)
292 PRK04040 adenylate kinase; Pro 82.3 0.99 2.1E-05 49.6 2.9 25 150-174 3-27 (188)
293 COG1124 DppF ABC-type dipeptid 82.2 0.93 2E-05 50.9 2.6 29 147-175 31-59 (252)
294 PF07728 AAA_5: AAA domain (dy 82.0 1.1 2.3E-05 46.4 3.0 22 152-173 2-23 (139)
295 PRK10361 DNA recombination pro 81.9 1.5E+02 0.0033 37.3 27.9 54 978-1034 138-191 (475)
296 PRK08727 hypothetical protein; 81.9 2.1 4.5E-05 48.8 5.5 31 146-176 38-68 (233)
297 PF15254 CCDC14: Coiled-coil d 81.9 1.8E+02 0.0039 38.1 22.5 24 884-907 429-452 (861)
298 PRK07667 uridine kinase; Provi 81.9 1.8 4E-05 47.7 4.9 26 150-175 18-43 (193)
299 PF15619 Lebercilin: Ciliary p 81.8 90 0.0019 34.6 20.9 61 975-1035 120-184 (194)
300 cd03115 SRP The signal recogni 81.8 1.4 3E-05 47.6 3.9 27 151-177 2-28 (173)
301 PRK05896 DNA polymerase III su 81.8 2.1 4.6E-05 54.8 6.0 59 117-177 7-66 (605)
302 PRK09111 DNA polymerase III su 81.7 1.3 2.8E-05 57.3 4.0 55 118-176 16-73 (598)
303 PF00158 Sigma54_activat: Sigm 81.6 1.7 3.7E-05 46.9 4.4 25 147-171 20-44 (168)
304 PHA00729 NTP-binding motif con 81.6 2.1 4.6E-05 48.2 5.2 29 146-174 14-42 (226)
305 KOG4593 Mitotic checkpoint pro 81.5 1.8E+02 0.0039 37.8 29.1 37 877-913 146-182 (716)
306 KOG0056 Heavy metal exporter H 81.4 1.4 3E-05 53.5 3.8 41 148-188 563-603 (790)
307 TIGR02903 spore_lon_C ATP-depe 81.4 2.1 4.6E-05 55.8 6.0 36 141-176 167-202 (615)
308 COG4172 ABC-type uncharacteriz 81.4 0.88 1.9E-05 54.2 2.2 30 147-176 311-340 (534)
309 PRK15453 phosphoribulokinase; 81.4 1.2 2.7E-05 51.5 3.3 26 148-173 4-29 (290)
310 cd02034 CooC The accessory pro 81.3 1.5 3.3E-05 44.2 3.7 26 152-177 2-27 (116)
311 PF10146 zf-C4H2: Zinc finger- 81.3 13 0.00028 42.1 11.3 43 988-1030 61-103 (230)
312 PRK14527 adenylate kinase; Pro 81.1 1.4 2.9E-05 48.6 3.6 28 147-174 4-31 (191)
313 PF00308 Bac_DnaA: Bacterial d 81.1 2.4 5.1E-05 47.9 5.5 41 136-176 19-61 (219)
314 PF10498 IFT57: Intra-flagella 81.0 12 0.00027 45.2 11.7 56 978-1033 264-319 (359)
315 PRK06761 hypothetical protein; 81.0 1.1 2.3E-05 52.4 2.7 26 150-175 4-29 (282)
316 KOG1962 B-cell receptor-associ 80.9 12 0.00026 41.5 10.5 61 973-1033 151-211 (216)
317 COG0802 Predicted ATPase or ki 80.8 2.9 6.3E-05 43.7 5.5 29 147-175 23-51 (149)
318 PF09789 DUF2353: Uncharacteri 80.8 1.3E+02 0.0028 35.8 21.2 10 1023-1032 197-206 (319)
319 PRK05416 glmZ(sRNA)-inactivati 80.7 1.1 2.4E-05 52.5 2.8 21 149-169 6-26 (288)
320 KOG0979 Structural maintenance 80.6 2.3E+02 0.0049 38.4 23.1 29 1299-1327 835-864 (1072)
321 PRK14974 cell division protein 80.5 2.8 6.1E-05 50.3 6.1 31 147-177 138-168 (336)
322 PRK08356 hypothetical protein; 80.4 1.1 2.4E-05 49.5 2.5 22 150-171 6-27 (195)
323 KOG0994 Extracellular matrix g 80.2 2.4E+02 0.0052 38.5 36.8 8 1016-1023 1732-1739(1758)
324 KOG4460 Nuclear pore complex, 80.2 1.7E+02 0.0036 36.7 21.9 101 891-996 632-732 (741)
325 PRK14957 DNA polymerase III su 80.2 2.4 5.3E-05 54.0 5.7 55 117-175 7-64 (546)
326 TIGR03319 YmdA_YtgF conserved 80.1 1.4E+02 0.0031 38.2 21.3 15 1384-1398 409-423 (514)
327 TIGR02881 spore_V_K stage V sp 80.0 1.5 3.2E-05 50.9 3.5 31 147-177 40-70 (261)
328 PF03193 DUF258: Protein of un 80.0 1.5 3.3E-05 46.7 3.2 25 148-172 34-58 (161)
329 TIGR00176 mobB molybdopterin-g 80.0 1.6 3.5E-05 46.4 3.5 26 152-177 2-27 (155)
330 PF04111 APG6: Autophagy prote 80.0 23 0.00049 42.3 13.4 23 1013-1035 111-133 (314)
331 TIGR02868 CydC thiol reductant 80.0 0.96 2.1E-05 58.2 2.1 28 147-174 359-386 (529)
332 PRK14732 coaE dephospho-CoA ki 80.0 1.6 3.4E-05 48.5 3.5 47 152-203 2-53 (196)
333 KOG0963 Transcription factor/C 79.9 1.9E+02 0.0041 37.1 27.5 23 975-997 287-309 (629)
334 PRK14955 DNA polymerase III su 79.9 2.6 5.6E-05 52.1 5.8 55 119-175 9-64 (397)
335 PRK08116 hypothetical protein; 79.9 3.2 6.9E-05 48.4 6.2 46 131-176 95-141 (268)
336 PRK06936 type III secretion sy 79.8 1.7 3.7E-05 53.7 4.0 41 133-173 146-186 (439)
337 PRK01156 chromosome segregatio 79.8 2.6E+02 0.0056 38.6 33.2 23 1302-1324 732-754 (895)
338 KOG1003 Actin filament-coating 79.7 1E+02 0.0022 33.8 18.6 157 875-1035 11-171 (205)
339 TIGR00064 ftsY signal recognit 79.6 3.4 7.3E-05 48.3 6.3 46 132-177 46-100 (272)
340 KOG4674 Uncharacterized conser 79.6 3.3E+02 0.0072 39.7 30.3 25 973-997 805-829 (1822)
341 PF05911 DUF869: Plant protein 79.5 1.6E+02 0.0034 39.4 21.8 73 926-1008 83-155 (769)
342 PRK15093 antimicrobial peptide 79.5 1.4 3E-05 53.0 3.2 27 147-173 31-57 (330)
343 COG4088 Predicted nucleotide k 79.5 2 4.2E-05 47.0 3.8 103 151-262 3-111 (261)
344 TIGR03499 FlhF flagellar biosy 79.4 1.8 3.8E-05 50.9 3.9 45 132-176 169-221 (282)
345 PRK08154 anaerobic benzoate ca 79.4 2.4 5.2E-05 50.5 5.1 48 126-173 106-157 (309)
346 PRK11308 dppF dipeptide transp 79.4 1.4 3.1E-05 52.9 3.2 27 147-173 39-65 (327)
347 COG2805 PilT Tfp pilus assembl 79.4 1.5 3.2E-05 50.6 3.1 78 87-175 70-151 (353)
348 PRK14528 adenylate kinase; Pro 79.4 1.6 3.4E-05 47.9 3.3 24 150-173 2-25 (186)
349 TIGR02546 III_secr_ATP type II 79.4 3 6.4E-05 51.8 6.0 37 137-173 133-169 (422)
350 PF04665 Pox_A32: Poxvirus A32 79.3 1.4 3.1E-05 50.1 2.9 26 150-175 14-39 (241)
351 cd03293 ABC_NrtD_SsuB_transpor 79.3 1.4 3E-05 49.6 3.0 27 147-173 28-54 (220)
352 PRK05537 bifunctional sulfate 79.3 2 4.2E-05 55.4 4.6 44 130-175 375-418 (568)
353 TIGR02788 VirB11 P-type DNA tr 79.3 1.2 2.5E-05 53.2 2.4 25 149-173 144-168 (308)
354 KOG4593 Mitotic checkpoint pro 79.3 2.1E+02 0.0045 37.2 27.3 25 1410-1434 631-662 (716)
355 PRK10646 ADP-binding protein; 79.2 3.5 7.6E-05 43.6 5.6 25 149-173 28-52 (153)
356 TIGR00455 apsK adenylylsulfate 79.2 2.4 5.2E-05 46.3 4.7 29 147-175 16-44 (184)
357 COG1493 HprK Serine kinase of 79.2 1.4 3E-05 50.9 2.7 24 149-172 145-168 (308)
358 PRK13341 recombination factor 79.0 2.5 5.4E-05 55.9 5.5 36 138-173 41-76 (725)
359 PRK09112 DNA polymerase III su 79.0 2.6 5.7E-05 51.0 5.3 40 136-175 31-71 (351)
360 COG1123 ATPase components of v 79.0 1.1 2.4E-05 56.2 2.1 28 148-175 316-343 (539)
361 PRK10416 signal recognition pa 79.0 2 4.3E-05 51.3 4.2 31 147-177 112-142 (318)
362 PRK04195 replication factor C 79.0 2 4.4E-05 54.4 4.6 26 148-173 38-63 (482)
363 TIGR02673 FtsE cell division A 78.9 1.5 3.3E-05 49.0 3.1 27 147-173 26-52 (214)
364 PRK06835 DNA replication prote 78.9 3.7 8E-05 49.3 6.4 29 148-176 182-210 (329)
365 TIGR00960 3a0501s02 Type II (G 78.9 1.5 3.3E-05 49.1 3.1 27 147-173 27-53 (216)
366 TIGR03497 FliI_clade2 flagella 78.9 3.7 8E-05 50.7 6.6 36 138-173 126-161 (413)
367 cd01983 Fer4_NifH The Fer4_Nif 78.9 2 4.3E-05 40.7 3.5 25 152-176 2-26 (99)
368 PF00005 ABC_tran: ABC transpo 78.9 1.5 3.2E-05 45.2 2.7 26 148-173 10-35 (137)
369 PF00625 Guanylate_kin: Guanyl 78.8 1.7 3.8E-05 47.4 3.4 26 149-174 2-27 (183)
370 cd03260 ABC_PstB_phosphate_tra 78.8 1.6 3.5E-05 49.4 3.2 27 147-173 24-50 (227)
371 PRK00698 tmk thymidylate kinas 78.8 2 4.4E-05 47.5 4.1 28 149-176 3-30 (205)
372 PRK15177 Vi polysaccharide exp 78.8 1.6 3.4E-05 49.1 3.1 27 147-173 11-37 (213)
373 TIGR01166 cbiO cobalt transpor 78.8 1.6 3.5E-05 47.9 3.1 25 147-171 16-40 (190)
374 TIGR01359 UMP_CMP_kin_fam UMP- 78.7 1.5 3.3E-05 47.7 2.9 23 152-174 2-24 (183)
375 PRK06921 hypothetical protein; 78.7 2.1 4.7E-05 49.7 4.3 28 148-175 116-143 (266)
376 COG4619 ABC-type uncharacteriz 78.7 1.5 3.2E-05 46.4 2.6 25 148-172 28-52 (223)
377 PRK09473 oppD oligopeptide tra 78.7 1.4 3.1E-05 52.9 3.0 27 147-173 40-66 (330)
378 PRK15079 oligopeptide ABC tran 78.7 1.5 3.3E-05 52.7 3.1 27 147-173 45-71 (331)
379 PRK11022 dppD dipeptide transp 78.6 1.2 2.6E-05 53.4 2.3 27 147-173 31-57 (326)
380 KOG2891 Surface glycoprotein [ 78.6 75 0.0016 35.9 15.5 27 655-681 108-138 (445)
381 cd01124 KaiC KaiC is a circadi 78.5 1.8 3.8E-05 47.1 3.4 27 151-177 1-27 (187)
382 PRK12608 transcription termina 78.5 2.1 4.5E-05 51.7 4.2 42 134-175 118-159 (380)
383 PRK13768 GTPase; Provisional 78.5 1.9 4.1E-05 49.8 3.8 27 151-177 4-30 (253)
384 PF13479 AAA_24: AAA domain 78.5 1.4 2.9E-05 49.6 2.5 22 148-169 2-23 (213)
385 COG2274 SunT ABC-type bacterio 78.5 1.2 2.5E-05 58.7 2.2 30 147-176 497-526 (709)
386 PRK14962 DNA polymerase III su 78.4 3 6.5E-05 52.5 5.8 54 118-175 6-62 (472)
387 TIGR02880 cbbX_cfxQ probable R 78.4 1.7 3.7E-05 51.1 3.4 28 151-178 60-87 (284)
388 TIGR03574 selen_PSTK L-seryl-t 78.4 1.6 3.5E-05 50.2 3.1 24 152-175 2-25 (249)
389 TIGR01026 fliI_yscN ATPase Fli 78.3 3.9 8.5E-05 50.9 6.6 39 134-172 148-186 (440)
390 cd03225 ABC_cobalt_CbiO_domain 78.3 1.7 3.7E-05 48.5 3.2 27 147-173 25-51 (211)
391 TIGR02640 gas_vesic_GvpN gas v 78.2 3 6.5E-05 48.4 5.3 41 130-173 5-45 (262)
392 PF04012 PspA_IM30: PspA/IM30 78.2 1.2E+02 0.0027 34.0 18.5 133 882-1030 16-148 (221)
393 PRK07960 fliI flagellum-specif 78.1 4.3 9.4E-05 50.3 6.8 42 132-173 158-199 (455)
394 KOG3684 Ca2+-activated K+ chan 78.1 84 0.0018 38.6 17.0 35 817-851 349-383 (489)
395 cd03116 MobB Molybdenum is an 78.0 2.2 4.8E-05 45.5 3.8 28 150-177 2-29 (159)
396 PF15397 DUF4618: Domain of un 78.0 1.4E+02 0.003 34.5 29.0 31 1007-1037 192-222 (258)
397 cd03259 ABC_Carb_Solutes_like 78.0 1.7 3.8E-05 48.5 3.2 27 147-173 24-50 (213)
398 KOG0243 Kinesin-like protein [ 78.0 74 0.0016 43.1 18.0 7 713-719 357-363 (1041)
399 PF14532 Sigma54_activ_2: Sigm 77.9 1.1 2.4E-05 46.6 1.4 25 147-171 19-43 (138)
400 TIGR00678 holB DNA polymerase 77.9 3.1 6.6E-05 45.6 5.0 36 140-175 4-40 (188)
401 KOG0804 Cytoplasmic Zn-finger 77.8 52 0.0011 40.0 15.1 6 430-435 77-82 (493)
402 PRK14531 adenylate kinase; Pro 77.8 1.9 4.1E-05 47.1 3.4 25 150-174 3-27 (183)
403 cd03255 ABC_MJ0796_Lo1CDE_FtsE 77.6 1.8 3.9E-05 48.6 3.1 27 147-173 28-54 (218)
404 PRK04220 2-phosphoglycerate ki 77.6 2.7 5.8E-05 49.4 4.6 27 147-173 90-116 (301)
405 TIGR03608 L_ocin_972_ABC putat 77.6 1.8 3.8E-05 48.2 3.1 26 148-173 23-48 (206)
406 KOG2991 Splicing regulator [RN 77.6 1.3E+02 0.0028 33.9 24.0 20 1013-1032 283-302 (330)
407 KOG0804 Cytoplasmic Zn-finger 77.5 64 0.0014 39.3 15.6 12 659-670 104-115 (493)
408 PRK14959 DNA polymerase III su 77.5 2.8 6.1E-05 54.0 5.1 55 117-175 7-64 (624)
409 PLN02796 D-glycerate 3-kinase 77.4 1.7 3.8E-05 51.8 3.0 24 151-174 102-125 (347)
410 PRK03839 putative kinase; Prov 77.4 1.8 4E-05 47.0 3.1 23 151-173 2-24 (180)
411 PF01695 IstB_IS21: IstB-like 77.4 3.4 7.3E-05 45.0 5.1 30 147-176 45-74 (178)
412 cd03229 ABC_Class3 This class 77.4 1.9 4.1E-05 46.8 3.2 27 147-173 24-50 (178)
413 PRK06620 hypothetical protein; 77.3 3.2 6.8E-05 46.7 5.0 20 150-169 45-64 (214)
414 cd03296 ABC_CysA_sulfate_impor 77.3 1.8 4E-05 49.4 3.2 27 147-173 26-52 (239)
415 PRK14969 DNA polymerase III su 77.2 3.2 6.9E-05 53.1 5.6 54 118-175 8-64 (527)
416 KOG4403 Cell surface glycoprot 77.2 86 0.0019 37.8 16.3 16 894-909 257-272 (575)
417 PRK11176 lipid transporter ATP 77.2 1.6 3.4E-05 57.0 2.9 28 147-174 367-394 (582)
418 cd02026 PRK Phosphoribulokinas 77.1 1.8 3.8E-05 50.6 3.0 22 152-173 2-23 (273)
419 PRK00023 cmk cytidylate kinase 77.0 1.9 4.1E-05 48.9 3.1 26 149-174 4-29 (225)
420 KOG4809 Rab6 GTPase-interactin 77.0 62 0.0013 40.3 15.5 36 882-917 331-366 (654)
421 PRK06002 fliI flagellum-specif 76.9 2.1 4.7E-05 52.9 3.7 33 6-39 46-78 (450)
422 PRK05642 DNA replication initi 76.9 4.5 9.8E-05 46.1 6.2 26 150-175 46-71 (234)
423 PRK14958 DNA polymerase III su 76.8 3.6 7.8E-05 52.4 5.8 55 117-175 7-64 (509)
424 cd03235 ABC_Metallic_Cations A 76.8 1.8 3.9E-05 48.4 2.9 27 147-173 23-49 (213)
425 cd04508 TUDOR Tudor domains ar 76.8 5.4 0.00012 33.0 5.0 43 10-52 1-46 (48)
426 cd03292 ABC_FtsE_transporter F 76.7 1.9 4.2E-05 48.1 3.1 27 147-173 25-51 (214)
427 PHA02530 pseT polynucleotide k 76.7 1.8 3.8E-05 51.3 2.9 24 150-173 3-26 (300)
428 PRK10436 hypothetical protein; 76.7 1.8 3.8E-05 54.3 3.0 27 148-174 217-243 (462)
429 TIGR03689 pup_AAA proteasome A 76.6 14 0.00031 46.8 10.9 27 148-174 215-241 (512)
430 cd03258 ABC_MetN_methionine_tr 76.6 2 4.3E-05 48.8 3.2 27 147-173 29-55 (233)
431 PF13870 DUF4201: Domain of un 76.5 1.2E+02 0.0026 33.0 19.6 17 926-942 47-63 (177)
432 PRK14970 DNA polymerase III su 76.5 4.3 9.4E-05 49.6 6.3 57 117-175 8-65 (367)
433 PRK06305 DNA polymerase III su 76.5 3.8 8.3E-05 51.4 5.9 57 118-176 9-66 (451)
434 PRK05201 hslU ATP-dependent pr 76.4 5 0.00011 49.2 6.5 61 113-173 5-74 (443)
435 smart00072 GuKc Guanylate kina 76.4 1.8 4E-05 47.3 2.7 23 151-173 4-26 (184)
436 PRK14950 DNA polymerase III su 76.4 3.6 7.8E-05 53.5 5.8 56 118-176 8-65 (585)
437 PRK14963 DNA polymerase III su 76.4 2.9 6.3E-05 53.1 4.8 55 119-176 7-63 (504)
438 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.3 2.1 4.5E-05 47.6 3.2 26 151-176 40-65 (205)
439 TIGR01000 bacteriocin_acc bact 76.2 1.8E+02 0.0039 36.8 20.7 23 975-997 238-260 (457)
440 cd03223 ABCD_peroxisomal_ALDP 76.2 2.2 4.7E-05 45.9 3.2 27 147-173 25-51 (166)
441 TIGR03007 pepcterm_ChnLen poly 76.1 1.2E+02 0.0025 38.8 19.4 176 856-1034 135-336 (498)
442 COG1474 CDC6 Cdc6-related prot 76.1 3.1 6.7E-05 50.6 4.8 39 140-178 33-71 (366)
443 TIGR03864 PQQ_ABC_ATP ABC tran 75.9 2.1 4.6E-05 48.8 3.2 27 147-173 25-51 (236)
444 PF13514 AAA_27: AAA domain 75.9 1.5E+02 0.0032 42.1 21.7 190 847-1036 139-388 (1111)
445 cd03256 ABC_PhnC_transporter A 75.8 2.1 4.6E-05 48.8 3.1 27 147-173 25-51 (241)
446 PRK11124 artP arginine transpo 75.7 2.1 4.6E-05 48.9 3.2 26 147-172 26-51 (242)
447 PRK05428 HPr kinase/phosphoryl 75.7 2.1 4.5E-05 50.4 3.0 24 149-172 146-169 (308)
448 cd03224 ABC_TM1139_LivF_branch 75.7 2.2 4.7E-05 48.1 3.2 26 147-172 24-49 (222)
449 PRK09087 hypothetical protein; 75.7 3.5 7.6E-05 46.8 4.8 24 148-171 43-66 (226)
450 cd03297 ABC_ModC_molybdenum_tr 75.6 2.1 4.6E-05 47.9 3.0 26 147-173 22-47 (214)
451 TIGR02315 ABC_phnC phosphonate 75.5 2.2 4.7E-05 48.8 3.2 27 147-173 26-52 (243)
452 PRK05922 type III secretion sy 75.5 3.1 6.8E-05 51.4 4.6 41 133-173 141-181 (434)
453 CHL00081 chlI Mg-protoporyphyr 75.4 3.5 7.5E-05 49.7 4.9 31 146-176 35-65 (350)
454 TIGR00382 clpX endopeptidase C 75.4 4.8 0.0001 49.6 6.2 24 150-173 117-140 (413)
455 PRK02496 adk adenylate kinase; 75.3 2.3 4.9E-05 46.5 3.1 22 152-173 4-25 (184)
456 PRK06526 transposase; Provisio 75.3 2.5 5.4E-05 48.8 3.5 29 148-176 97-125 (254)
457 cd03268 ABC_BcrA_bacitracin_re 75.2 2.3 5E-05 47.4 3.2 26 147-172 24-49 (208)
458 PRK05439 pantothenate kinase; 75.1 4.8 0.0001 47.7 5.9 30 146-175 83-112 (311)
459 cd03266 ABC_NatA_sodium_export 75.1 2.3 5E-05 47.7 3.2 25 147-171 29-53 (218)
460 PRK13539 cytochrome c biogenes 75.1 2.3 5.1E-05 47.4 3.2 26 147-172 26-51 (207)
461 TIGR01184 ntrCD nitrate transp 75.1 2.3 5E-05 48.3 3.2 27 147-173 9-35 (230)
462 PF00769 ERM: Ezrin/radixin/mo 75.0 1.2E+02 0.0026 35.0 16.9 8 975-982 84-91 (246)
463 cd03230 ABC_DR_subfamily_A Thi 75.0 2.4 5.2E-05 45.8 3.1 26 147-172 24-49 (173)
464 PLN02318 phosphoribulokinase/u 75.0 3.5 7.5E-05 52.4 4.8 39 134-172 49-88 (656)
465 PRK03731 aroL shikimate kinase 75.0 2.5 5.4E-05 45.5 3.2 25 150-174 3-27 (171)
466 TIGR00602 rad24 checkpoint pro 74.9 3.5 7.6E-05 53.5 5.1 58 116-173 74-134 (637)
467 PRK14960 DNA polymerase III su 74.8 4 8.7E-05 52.6 5.4 54 118-175 7-63 (702)
468 cd03265 ABC_DrrA DrrA is the A 74.8 2.4 5.2E-05 47.7 3.2 25 147-171 24-48 (220)
469 COG1126 GlnQ ABC-type polar am 74.8 2.4 5.2E-05 46.9 3.0 21 148-168 27-47 (240)
470 KOG1970 Checkpoint RAD17-RFC c 74.7 3.7 7.9E-05 51.0 4.8 60 114-173 70-134 (634)
471 cd03219 ABC_Mj1267_LivG_branch 74.7 2.2 4.8E-05 48.5 2.9 27 147-173 24-50 (236)
472 KOG1899 LAR transmembrane tyro 74.7 43 0.00093 42.1 13.5 23 1353-1375 706-728 (861)
473 TIGR00972 3a0107s01c2 phosphat 74.7 2.4 5.1E-05 48.7 3.2 27 147-173 25-51 (247)
474 cd03226 ABC_cobalt_CbiO_domain 74.6 2.3 5.1E-05 47.2 3.1 26 147-172 24-49 (205)
475 PRK10908 cell division protein 74.6 2.4 5.2E-05 47.8 3.2 26 147-172 26-51 (222)
476 PLN02348 phosphoribulokinase 74.6 3.8 8.2E-05 49.8 4.9 28 147-174 47-74 (395)
477 cd01672 TMPK Thymidine monopho 74.6 2.7 5.8E-05 46.0 3.5 24 152-175 3-26 (200)
478 cd03222 ABC_RNaseL_inhibitor T 74.6 2.4 5.3E-05 46.1 3.0 27 147-173 23-49 (177)
479 PF12774 AAA_6: Hydrolytic ATP 74.5 3.3 7E-05 47.1 4.1 41 134-174 16-57 (231)
480 cd03269 ABC_putative_ATPase Th 74.5 2.5 5.3E-05 47.2 3.2 25 148-172 25-49 (210)
481 cd03262 ABC_HisP_GlnQ_permease 74.5 2.5 5.3E-05 47.3 3.2 27 147-173 24-50 (213)
482 TIGR03410 urea_trans_UrtE urea 74.5 2.4 5.1E-05 48.1 3.1 27 147-173 24-50 (230)
483 KOG0249 LAR-interacting protei 74.3 1.6E+02 0.0036 38.0 18.5 144 875-1033 119-262 (916)
484 TIGR00679 hpr-ser Hpr(Ser) kin 74.3 2.3 4.9E-05 49.8 2.9 22 151-172 148-169 (304)
485 cd03270 ABC_UvrA_I The excisio 74.3 2.5 5.4E-05 48.0 3.2 24 147-170 19-42 (226)
486 PRK10584 putative ABC transpor 74.2 2.5 5.4E-05 47.8 3.2 24 147-170 34-57 (228)
487 TIGR01005 eps_transp_fam exopo 74.2 2.2E+02 0.0047 38.6 22.0 175 855-1035 167-372 (754)
488 PF11559 ADIP: Afadin- and alp 74.1 1.2E+02 0.0027 31.9 16.2 108 874-998 44-151 (151)
489 PRK11248 tauB taurine transpor 74.1 2.5 5.4E-05 48.9 3.2 24 147-170 25-48 (255)
490 KOG0243 Kinesin-like protein [ 74.0 1.5E+02 0.0033 40.4 19.3 146 875-1034 434-579 (1041)
491 cd03245 ABCC_bacteriocin_expor 74.0 2.5 5.5E-05 47.5 3.2 24 147-170 28-51 (220)
492 PRK13541 cytochrome c biogenes 74.0 2.6 5.6E-05 46.5 3.2 24 147-170 24-47 (195)
493 COG2804 PulE Type II secretory 74.0 2.4 5.3E-05 52.5 3.1 22 152-173 261-282 (500)
494 TIGR01978 sufC FeS assembly AT 74.0 2.5 5.3E-05 48.3 3.1 24 147-170 24-47 (243)
495 cd03238 ABC_UvrA The excision 74.0 2.7 5.8E-05 45.7 3.2 24 147-170 19-42 (176)
496 TIGR00017 cmk cytidylate kinas 73.9 2.7 5.8E-05 47.4 3.3 23 151-173 4-26 (217)
497 PF10267 Tmemb_cc2: Predicted 73.9 1.2E+02 0.0025 37.4 17.1 116 905-1036 214-330 (395)
498 KOG1962 B-cell receptor-associ 73.9 1.4E+02 0.0031 33.4 16.2 128 790-957 81-208 (216)
499 PRK07133 DNA polymerase III su 73.9 4.5 9.8E-05 53.0 5.7 56 116-173 8-64 (725)
500 TIGR03017 EpsF chain length de 73.9 2.4E+02 0.0053 35.3 22.2 200 832-1035 144-369 (444)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.5e-237 Score=2192.38 Aligned_cols=1361 Identities=34% Similarity=0.529 Sum_probs=1046.9
Q ss_pred ccccccCcEEEEeCCCCCeEeEEEEEec--CCeEEEEe--CCCcEEEEeCCcccCCCCC-CCCCCcCccccCCCCChHHH
Q 000440 4 PVNIIVGSHVWVEHPELAWVDGEVFKIS--AEEVHVHT--TNGQTVITNISKVFPKDTE-APPGGVDDMTKLSYLHEPGV 78 (1509)
Q Consensus 4 ~~~~~~g~~vw~~~~~~~~~~~~v~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~L~~l~e~~v 78 (1509)
..++.+|..||+||.+.+|+.|.|.+.+ ++.++... .+|+...++...+...... ...+++||||.|+|||||+|
T Consensus 3 ~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsV 82 (1463)
T COG5022 3 TTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAV 82 (1463)
T ss_pred ccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHH
Confidence 3468999999999999999999999743 44443332 4554444544433221111 13589999999999999999
Q ss_pred HHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCC
Q 000440 79 LHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGES 158 (1509)
Q Consensus 79 l~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeS 158 (1509)
||||++||.+++||||+|.||||||||+.+| ||+.++|+.|++++..+++|||||||++||+.|...++||||||||||
T Consensus 83 l~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGES 161 (1463)
T COG5022 83 LHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGES 161 (1463)
T ss_pred HHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCC
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEEecCCCcccceeeeeec
Q 000440 159 GAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYL 238 (1509)
Q Consensus 159 GaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yL 238 (1509)
||||||+||+||+|||.+++.++....+||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+|||
T Consensus 162 GAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YL 241 (1463)
T COG5022 162 GAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYL 241 (1463)
T ss_pred CCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhh
Confidence 99999999999999999998777666789999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCccceeeeccccC-ChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhccCCHHHHH
Q 000440 239 LERSRVCQISDPERNYHCFYLLCAA-PPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQD 317 (1509)
Q Consensus 239 LEksRvv~~~~~ErnfHiFYql~~~-~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~ 317 (1509)
|||||||+|+.+|||||||||||++ +.+.++.+++..|++|+||++|+|..++|+||+++|..|+.||+++||+.++|.
T Consensus 242 LEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~ 321 (1463)
T COG5022 242 LEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQD 321 (1463)
T ss_pred hhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHH
Confidence 9999999999999999999999995 444555666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCCceEeccCCHHHHHHhH
Q 000440 318 AIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSR 397 (1509)
Q Consensus 318 ~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~r 397 (1509)
.||++||||||||||+|..+++ +.+...+. +.++.||.|||||+..|.+||++|.|++++|.|.+|+|..||..+|
T Consensus 322 ~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ir 397 (1463)
T COG5022 322 QIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIR 397 (1463)
T ss_pred HHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHH
Confidence 9999999999999999998664 44444443 3599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHHHHHHHHhhhhhHHHhhhc
Q 000440 398 DALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKE 477 (1509)
Q Consensus 398 dalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~~f~~eq~~y~~E 477 (1509)
|||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+|
T Consensus 398 dslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE 477 (1463)
T COG5022 398 DSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKE 477 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987777899999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchHhHHHhhhc-CcccccccccccccCCCCChHHHHHHHHHHhc--CCCCccCCCCCCCceEEEeeccce
Q 000440 478 EINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSRTSFTISHYAGEV 554 (1509)
Q Consensus 478 gi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~Hyag~V 554 (1509)
||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|+||||+|
T Consensus 478 ~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDV 557 (1463)
T COG5022 478 GIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDV 557 (1463)
T ss_pred cCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccc
Confidence 999999999999999999997 25599999999999999999999999999886 568899999999999999999999
Q ss_pred eeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCC
Q 000440 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPN 634 (1509)
Q Consensus 555 ~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN 634 (1509)
+|+++||++||||++++++++|+.+|+|+||..||+..... .+.++++|+|+.||.||++||++|++|+||||||||||
T Consensus 558 eY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~-~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN 636 (1463)
T COG5022 558 EYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-ESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPN 636 (1463)
T ss_pred eeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhc-cccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCC
Confidence 99999999999999999999999999999999999954333 34478899999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCC-----CCccHHHHHHHHHhcCCC-
Q 000440 635 NALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-----NYDDKVACEKILDKMGLK- 708 (1509)
Q Consensus 635 ~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~ll~~~~~~- 708 (1509)
..|.|+.||+.+|++|||||||+|+|||+|+|||+||+|++|+.||++|.|...+. ..|.+.+|+.||..+.++
T Consensus 637 ~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~ 716 (1463)
T COG5022 637 EEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDS 716 (1463)
T ss_pred cccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCCh
Confidence 99999999999999999999999999999999999999999999999999974332 135789999999998776
Q ss_pred -ccccccceeeeeccchhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHhHhhhhcccchhhhHHHHHHHHhHHH
Q 000440 709 -GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREAAA 787 (1509)
Q Consensus 709 -~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laR~~~~~~r~~~AA 787 (1509)
.||+|+||||||+|+++.||.+|...+..+++.||++|||++.|++|.+..+.+..+|...+|+..|+....-....++
T Consensus 717 ~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1463)
T COG5022 717 SKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLF 796 (1463)
T ss_pred hheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999887766666789
Q ss_pred HHhhhhhhhHHHHhhHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000440 788 LKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWR 866 (1509)
Q Consensus 788 i~IQ~~~R~~~~Rk~y~~~r~a~i~IQ-s~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ~~~R 866 (1509)
+++|+.||....|+.|......+..+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+.+|+.+|
T Consensus 797 ~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r 876 (1463)
T COG5022 797 IKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQR 876 (1463)
T ss_pred HHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999 6677766666566666688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 867 RRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILK 946 (1509)
Q Consensus 867 ~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~ 946 (1509)
...+++++.+++.+.+++..+......++.++.++...++........... .....|+..+...+ +++ ...
T Consensus 877 ~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k~---e~~a~lk~~l~~~d--~~~---~~~- 947 (1463)
T COG5022 877 VELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKT---ELIARLKKLLNNID--LEE---GPS- 947 (1463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHHH---HHHHHHHHHhhccc--ccc---hhH-
Confidence 999999999999999999999999999999999888776642211111110 11222222111100 000 000
Q ss_pred HHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000440 947 EQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNT---ELVKKLEDTEEK 1023 (1509)
Q Consensus 947 e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~e---el~~el~~~eee 1023 (1509)
.+ .. ...++.+|..+..++++.......-+...+....+.....+ ...+++.+...+
T Consensus 948 ----------------~~---~~-~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~~~ 1007 (1463)
T COG5022 948 ----------------IE---YV-KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ 1007 (1463)
T ss_pred ----------------HH---HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 00 00 01123333333333333333333222222211111111111 111122111111
Q ss_pred HHHHHHHHHhcCcCccccccCccccccccCCCCCcc--cCCccccCCccccccccCCCCCccc---cccc--hhh----H
Q 000440 1024 NQVIRQQALAMSPTGKSLSARPKTLVIQRTPENGNV--QNGEMKVTPDVTLAVTSAREPESEE---KPQK--SLN----E 1092 (1509)
Q Consensus 1024 ~~~L~qq~~~l~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~----~ 1092 (1509)
..-++.+...+++..... ..+.........+...+ .....++... .......+.... +..+ .+. .
T Consensus 1008 ~~~l~~~~~~lk~~~~~~-~~l~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~l~~~r~~~~~~~~q~ 1083 (1463)
T COG5022 1008 YGALQESTKQLKELPVEV-AELQSASKIISSESTELSILKPLQKLKGL---LLLENNQLQARYKALKLRRENSLLDDKQL 1083 (1463)
T ss_pred hhhhhhhhhhcccccchh-hhhhhhhhhhccchhhhhccCcccchhhh---hhHHHHHhhhhHhhhhhcCcccchhHHHH
Confidence 111222211111110000 00000000000000000 0000000000 000000000000 0000 000 0
Q ss_pred HhhhcHHHHHHhhh-cCCCCcC-CcchhHHH-HHHHHHhhhc-chhhhhHHHHHHHHHHHhHhc---cccccchhhHHHH
Q 000440 1093 KQQENQDLLIKCVS-QNLGFSR-SKPVAASV-IYKCLLHWRS-FEVERTTVFDRIIQTIASAIE---VQDNNDVLAYWLS 1165 (1509)
Q Consensus 1093 ~~~~~~~~L~~~i~-~~~~~~~-~~p~pA~i-l~~cl~~~~~-~~~~~~~ll~~ii~~i~~~i~---~~~d~~~lafWLS 1165 (1509)
...+....+.+.+. .++...+ ..+-||.. .+....+|+. ...+...++...+..++.+.+ ..+-.....||.+
T Consensus 1084 ~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~ 1163 (1463)
T COG5022 1084 YQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEA 1163 (1463)
T ss_pred HHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhcccccccccc
Confidence 11122222333333 2222211 11224444 3344456665 334445555555555555544 1122345789999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccccccccchhhhhhccccCCCCcCCcccccCCccccchhhhHHHhhhhhHHHHHHH
Q 000440 1166 NSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDLRQVEAKYPALLFKQQL 1245 (1509)
Q Consensus 1166 N~~~LL~~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~k~p~~~fkq~L 1245 (1509)
|...+++.-.- .... .+..-..+++ ....- +..+++. ..+..|
T Consensus 1164 ~~~~~~~~~~~--------~~~~-~~~~~~~~~~----------------d~~~~---~s~s~v~---------~l~~~l 1206 (1463)
T COG5022 1164 NLEALPSPPPF--------AALS-EKRLYQSALY----------------DEKSK---LSSSEVN---------DLKNEL 1206 (1463)
T ss_pred ccccCCCCCch--------hhcc-hhhhhHhhhh----------------ccccc---ccHHHHH---------HHHHHH
Confidence 99876521000 0000 0000000010 00000 0011111 246678
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhcccc--CCCccccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCCHH
Q 000440 1246 TAFLEKIYGMIRDNLKKDISPLLGLCIQ--APRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKVNYVPPF 1323 (1509)
Q Consensus 1246 ~~l~~~iy~~l~~~i~~~L~p~l~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~V~~~ 1323 (1509)
..+..++|..|.... .+.+++...+- ......+.+. .++..+..++..+.++++.+++.+.++++.+.+.+.
T Consensus 1207 ~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~ 1280 (1463)
T COG5022 1207 IALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEE 1280 (1463)
T ss_pred HHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchh
Confidence 888888888888765 22222211100 0000011100 011122333456778999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHhhhcCCCccccchhHHhhchhHHHHHHhhcccccccchHHHhhHHHHHHHHHhhcCCCcC
Q 000440 1324 LVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKK 1403 (1509)
Q Consensus 1324 l~~Q~f~QlF~fIna~lFN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~ 1403 (1509)
+..-.++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+.+||+.++ ...+..+|++++||+..+++.++...
T Consensus 1281 ~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~ 1357 (1463)
T COG5022 1281 VLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLN 1357 (1463)
T ss_pred hhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHH
Confidence 999999999999999999999999999999999999999999999999987 56677899999999999999987777
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhh
Q 000440 1404 TLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMT 1451 (1509)
Q Consensus 1404 ~~~~i~~~~C~~Ln~~Ql~kiL~~Y~~d~~e~~~vs~~~i~~v~~~~~ 1451 (1509)
+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++.++|.....
T Consensus 1358 ~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1358 KLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred HHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 77677 6999999999999999999999998 5999999977655444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.8e-202 Score=1903.32 Aligned_cols=768 Identities=36% Similarity=0.578 Sum_probs=718.4
Q ss_pred cccccCcEEEE-------eCCCCCeEeEEEE-EecCCeEEEEe---CCCcEEEEeCCcccCCCCCCCCCCcCccccCCCC
Q 000440 5 VNIIVGSHVWV-------EHPELAWVDGEVF-KISAEEVHVHT---TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYL 73 (1509)
Q Consensus 5 ~~~~~g~~vw~-------~~~~~~~~~~~v~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l 73 (1509)
.++.+|..||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.|++.++.+++||+.|+||
T Consensus 28 ~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~l 107 (821)
T PTZ00014 28 GNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHT 107 (821)
T ss_pred cccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCC
Confidence 45678999998 6789999999999 78888888875 5789999999999999987667899999999999
Q ss_pred ChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcc-CcCCCCchHHHHHHHHHHHHHhcCCCeEE
Q 000440 74 HEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMINEGKSNSI 152 (1509)
Q Consensus 74 ~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~-~~~~~~PHi~aia~~Ay~~m~~~~~~QsI 152 (1509)
|||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++||||
T Consensus 108 nE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsI 186 (821)
T PTZ00014 108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTI 186 (821)
T ss_pred CHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceE
Confidence 999999999999999999999999999999999998 9999999999985 57899999999999999999999999999
Q ss_pred EecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEEecCCCcccce
Q 000440 153 LVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGA 232 (1509)
Q Consensus 153 iisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga 232 (1509)
||||||||||||++|++|+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+||
T Consensus 187 iiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga 264 (821)
T PTZ00014 187 IVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYG 264 (821)
T ss_pred EEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeE
Confidence 9999999999999999999999986532 23579999999999999999999999999999999999999999999999
Q ss_pred eeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhccC
Q 000440 233 AVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGI 311 (1509)
Q Consensus 233 ~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~ 311 (1509)
+|.||||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|..++|+||+++|.+|+.||+.|||
T Consensus 265 ~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~ 343 (821)
T PTZ00014 265 SIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGL 343 (821)
T ss_pred EEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999 7889999999999999999995 58899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCeEEEecCC---CCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCCceEeccC
Q 000440 312 SEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTL 388 (1509)
Q Consensus 312 ~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l 388 (1509)
+++++.+||+|||||||||||+|.+... .+++.+.+. +.+.++.||+|||||+++|.++||+|++.++++.+++|+
T Consensus 344 s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~ 422 (821)
T PTZ00014 344 SESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPW 422 (821)
T ss_pred CHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCC
Confidence 9999999999999999999999986432 345555442 345799999999999999999999999999999999999
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHHHHHHHHhhh
Q 000440 389 DPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFK 468 (1509)
Q Consensus 389 ~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~~f~ 468 (1509)
+++||..+||||||+||++||+|||.+||.+|.+......+||||||||||+|+.|||||||||||||||||+||+|||+
T Consensus 423 ~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~ 502 (821)
T PTZ00014 423 SKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFE 502 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887667889999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCCCC-CCCceEE
Q 000440 469 MEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-SRTSFTI 547 (1509)
Q Consensus 469 ~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~-~~~~F~i 547 (1509)
.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||+++|++|++|.+|+. ....|+|
T Consensus 503 ~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I 582 (821)
T PTZ00014 503 RESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVI 582 (821)
T ss_pred HHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4689999
Q ss_pred EeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHHHHHcccCCee
Q 000440 548 SHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1509)
Q Consensus 548 ~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~ 627 (1509)
+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+|||
T Consensus 583 ~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phf 662 (821)
T PTZ00014 583 KHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPHF 662 (821)
T ss_pred EEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeE
Confidence 99999999999999999999999999999999999999999987544333444668999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCC-CCccHHHHHHHHHhcC
Q 000440 628 IRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACEKILDKMG 706 (1509)
Q Consensus 628 irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~ll~~~~ 706 (1509)
|||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+..... ..|+++.|+.||+.++
T Consensus 663 IRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~ 742 (821)
T PTZ00014 663 IRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSG 742 (821)
T ss_pred EEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999998865432 3588999999999987
Q ss_pred C--CccccccceeeeeccchhhhhhhHhhhhh---hhHHHHHHHhhhhHHHHHHHHHHHHhHhhhhcccchhhhHH
Q 000440 707 L--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKL 777 (1509)
Q Consensus 707 ~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laR~~ 777 (1509)
+ ++|++|+||||||+++++.||.+|.+++. .+++.||++||||++|++|++++.+++.||++||||++++.
T Consensus 743 l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 743 LPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 58999999999999999999998888764 68899999999999999999999999999999999988764
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-184 Score=1804.96 Aligned_cols=985 Identities=38% Similarity=0.610 Sum_probs=815.7
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEE-EeCCcccCCCCCCCCCCcCccccCCCCChHHHHHHHH
Q 000440 5 VNIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVI-TNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLA 83 (1509)
Q Consensus 5 ~~~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~ 83 (1509)
-.+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|.+.+ |+.++++|+||+ .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 346667899999999999999999987777999998888766 999999999976 467999999999999999999999
Q ss_pred HHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchh
Q 000440 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKT 163 (1509)
Q Consensus 84 ~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKT 163 (1509)
.||.++.||||+|..||+||||+++| ||++++++.|+|+.+.++||||||||+.||+.|+.+++||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEEecCCCcccceeeeeeccc
Q 000440 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLE 240 (1509)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLE 240 (1509)
|+||.|++|||++++++... +.+++++|+++||||||||||+|++|+|||||||||+|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998764221 258999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccceeeecccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhchhhccCCHHHHHH
Q 000440 241 RSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQDA 318 (1509)
Q Consensus 241 ksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1509)
||||++|+++||||||||||++ +++.++..|.|.+ +.+|.|+.++.. .++|+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999975 899999999886 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCCceEeccCCHHHHHHhHH
Q 000440 319 IFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSRD 398 (1509)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1509)
||+|+||||||||+.|...+..+.+.+.+. ...+.+|.||||+...|.++++++++.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 999999999999999998655566666553 36899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHHHHHHHHhhhhhHHHhhhcC
Q 000440 399 ALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEE 478 (1509)
Q Consensus 399 alak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~~f~~eq~~y~~Eg 478 (1509)
||||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHh-cCCCCccCCC--CCCCceEEEeeccce
Q 000440 479 INWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK--LSRTSFTISHYAGEV 554 (1509)
Q Consensus 479 i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~Hyag~V 554 (1509)
|.|++|+| .|-||||||||+ |+||+++|||||++|++||.+|+.||...| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 689999999995 669999999999999999999999999999 8999999997 567899999999999
Q ss_pred eeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCc-----------CcCCCCCCcchhHHHHHHHHHHHHHHccc
Q 000440 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNST 623 (1509)
Q Consensus 555 ~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t 623 (1509)
.|++.||++||+|++++.++.+|+.|++++|+.||.+... ..+|++.|.||+..|+.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987321 23455678999999999999999999999
Q ss_pred CCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCC-CCCccHHHHHHHH
Q 000440 624 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKIL 702 (1509)
Q Consensus 624 ~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll 702 (1509)
+|||||||.||+.|.|+.+|.+.|+.||||.||||+|||+|.|||+|++|.+|..||.++.+.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955554333 3467799999999
Q ss_pred HhcCCC--ccccccceeeeeccchhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHH---HHHhHhhhhcccchhhhHH
Q 000440 703 DKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIAL---RKAAIVLQSYWRGILACKL 777 (1509)
Q Consensus 703 ~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~---r~a~i~IQ~~~Rg~laR~~ 777 (1509)
..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+. ..|+.+||+.+|.|+..+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 988654 69999999999999999999999999999999999999999999999876 5699999999999999999
Q ss_pred HHHHHHhHHH-HHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 778 YEQLRREAAA-LKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFR----FRKQTKAAIIIEAYLRRHTACSYYK 852 (1509)
Q Consensus 778 ~~~~r~~~AA-i~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~----~~~~~~aA~~IQ~~~R~~~~r~~y~ 852 (1509)
|.|++.-..+ -.|+..-+.-..++.-..+..--..++ +.-..|+.+. .+..+......|-..+.-..+..-
T Consensus 818 w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~---~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~ae- 893 (1930)
T KOG0161|consen 818 WPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQ---KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAE- 893 (1930)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9876632111 122322222222211111111111111 1111111111 111122333333222211111100
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 853 SLKKAAVITQCG-WRRRVARRELR----NLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQ 927 (1509)
Q Consensus 853 ~~~ka~~~iQ~~-~R~~~ark~l~----~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~ 927 (1509)
....+. .+.....+.++ ++..+++....+....++++.++.++...+++.+..+.+++.++.....+++
T Consensus 894 ------e~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~ 967 (1930)
T KOG0161|consen 894 ------ELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLK 967 (1930)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00011112222 3333455556677777888888888888888888888888776544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 928 DALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1509)
Q Consensus 928 ~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~ 1007 (1509)
...+++. .+++..+++.++++.+++...++. ..+...+++...|.+...+++++++.++..+++..+...+++
T Consensus 968 ~l~~e~~-~~~e~~~kL~kekk~lEe~~~~l~------~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen 968 NLEEEIN-SLDENISKLSKEKKELEERIRELQ------DDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333332 245555555555555555544442 223335666777777777777777766666665544444444
Q ss_pred HHHHHH
Q 000440 1008 VRNTEL 1013 (1509)
Q Consensus 1008 ~~~eel 1013 (1509)
+...++
T Consensus 1041 k~~rkl 1046 (1930)
T KOG0161|consen 1041 KAKRKL 1046 (1930)
T ss_pred HHHHHH
Confidence 333333
No 4
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.5e-186 Score=1743.05 Aligned_cols=674 Identities=87% Similarity=1.337 Sum_probs=648.7
Q ss_pred CCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000440 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1509)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~ 141 (1509)
+|+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+|++|+++.|..|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEE
Q 000440 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1509)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l 221 (1509)
.|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeecccCccccccCCCCccceeeeccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000440 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1509)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1509)
+||.+|.|+||+|.+|||||||||.|++||||||||||||++++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1509)
|+.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||.||||++++|.++||++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987665566666665556789999999999999999999999999999
Q ss_pred ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHHHH
Q 000440 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 461 (1509)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~ 461 (1509)
+.+++++++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCCCCC
Q 000440 462 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS 541 (1509)
Q Consensus 462 f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~ 541 (1509)
|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHHHHHc
Q 000440 542 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1509)
Q Consensus 542 ~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~ 621 (1509)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+.+.++++||+++|+.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665555566789999999999999999999
Q ss_pred ccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCCCCccHHHHHHH
Q 000440 622 STEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKI 701 (1509)
Q Consensus 622 ~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~l 701 (1509)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......+++..|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766666889999999
Q ss_pred HHhcCCCccccccceeeeeccchhhhhhhHhhhh
Q 000440 702 LDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1509)
Q Consensus 702 l~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l 735 (1509)
|+.++.++|++|+||||||+++++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-183 Score=1681.32 Aligned_cols=752 Identities=64% Similarity=1.011 Sum_probs=723.1
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000440 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1509)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~A 139 (1509)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEE
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1509)
|+.|..++.||+||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999987 34578999999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeecccCccccccCCCCccceeeeccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000440 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1509)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1509)
+|+||.+|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..+.++||+.+|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhccccc
Q 000440 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1509)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1509)
..|+.||..+||+.++|..||++||||||||||+|..+.+.+++.+.++ ++..+|+|||++.+.|..||+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998876655555543 799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccc-CCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHH
Q 000440 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1509)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1509)
+++.|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 445589999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000440 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1509)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1509)
||+||+|||+.||++|.+|||+|+.|+|.||++|+++||+ |.||++||||+|++|.++|++|..||++.+.+|+.|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHHH
Q 000440 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1509)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 618 (1509)
++++..|+|.||||+|+|++.||++||||+|++++.+++..|+++|+..+|++...+..+.++++||+++|+.+|..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666655566889999999999999999
Q ss_pred HHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCCCCccHHHH
Q 000440 619 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVAC 698 (1509)
Q Consensus 619 ~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1509)
+|++|+||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHHhcCCCccccccceeeeeccchhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHhHhhhhcccchhhhHHH
Q 000440 699 EKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLY 778 (1509)
Q Consensus 699 ~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laR~~~ 778 (1509)
+.+|+.++.+.||+|+||||||+|+++.||.+|...+..+++.||+.+|+|+.|++|..+|++++.||+.+||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHH
Q 000440 779 EQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1509)
Q Consensus 779 ~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr 824 (1509)
..+ +..||+.||+.||++..|+.|...+.+++.+|+.+|++.+|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 778999999999999999999999999999999999999988
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3e-182 Score=1714.73 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=626.2
Q ss_pred CcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000440 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1509)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~ 142 (1509)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCC--CCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEE
Q 000440 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1509)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1509)
|...++||||||||||||||||++|+||+|||.++++.. ....+|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999987542 234689999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000440 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1509)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1509)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhccccc
Q 000440 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1509)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1509)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322222 234699999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCeEEeeeccccccCCCCCCHHHHHhhhhhh
Q 000440 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1509)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 456 (1509)
++|.++++++++||..+||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhc--CCCC
Q 000440 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKR 534 (1509)
Q Consensus 457 kLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 534 (1509)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred ccCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCc-----------------C
Q 000440 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------S 597 (1509)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1509)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHH
Q 000440 598 KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1509)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~ 677 (1509)
+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCccHHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
.||++|+|.......|++..|+.||+.+.. ++|++|+||||||+++++.||..|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456889999999999875 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=7.5e-182 Score=1702.97 Aligned_cols=661 Identities=46% Similarity=0.773 Sum_probs=625.6
Q ss_pred CcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000440 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1509)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~ 142 (1509)
|+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000440 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1509)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1509)
|...++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000440 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1509)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1509)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhccccc
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1509)
|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ...++.||.||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 34555554 34799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccC-CCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHH
Q 000440 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1509)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1509)
+++.+++|++++||..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000440 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1509)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1509)
||+|++|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCc-CCCCCCcchhHHHHHHHHHH
Q 000440 539 KL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1509)
Q Consensus 539 ~~-~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1509)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+...... ....+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754221 22336689999999999999
Q ss_pred HHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCC--CCcc
Q 000440 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDD 694 (1509)
Q Consensus 617 ~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1509)
|++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3467
Q ss_pred HHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 695 KVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 695 ~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
+..|+.+++.+.+ ++|++|+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999865
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-181 Score=1563.59 Aligned_cols=728 Identities=40% Similarity=0.701 Sum_probs=675.3
Q ss_pred CCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000440 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1509)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay 140 (1509)
..|++|++-|+.++|++++.||+.||..+.||||+|.|||+||||+.++ ||++++|++|+|..+.+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCC-CCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEE
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~-~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1509)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865432 2246778999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000440 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTE 297 (1509)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1509)
.|+||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.++..|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999996 79999999998 88999999999
Q ss_pred HHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhccc
Q 000440 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1509)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1509)
+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+... ..++.+|+||++.+++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 44444433 46999999999999999999999999
Q ss_pred ccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCC-----CCCeEEeeeccccccCCCCCCHHHHHhh
Q 000440 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-----NSRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1509)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~-----~~~~~IgiLDi~GFE~f~~NsfeQlciN 452 (1509)
.+++|.+.+++|++||.++||||||++|+|||+|||.+||+++.... .....||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999986431 2358999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCC-CChHHHHHHHHHHhcC
Q 000440 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKS 531 (1509)
Q Consensus 453 yaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~ 531 (1509)
|+||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..||+++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCccCCC-------CCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCC-CCCCc
Q 000440 532 NKRFIKPK-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK-SSKFS 603 (1509)
Q Consensus 532 ~~~~~~p~-------~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~-~~~~~ 603 (1509)
|++|...+ ..-.+|-|.||||+|+|++.||++||+|.+..|+-.+|.+|+++++++||+....+... ..+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 23478999999999999999999999999999999999999999999999975433222 23668
Q ss_pred chhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcc
Q 000440 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1509)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l 683 (1509)
|+|++||.|+..||++|.+-+|+||||||||+.|.|+.||...|.+|.+|+|+||.+|++++||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC--CCccHHHHHHHHHhcCC-Cccccccceeeeeccc-hhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHHH
Q 000440 684 APDVLDG--NYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1509)
Q Consensus 684 ~~~~~~~--~~~~~~~~~~ll~~~~~-~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r 759 (1509)
++..++. ..++++.|..+++..|. +++.+|+||||+|... +-.||..|.+++...++.||+.||||++|.+|++++
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876532 23578999999999987 5899999999999986 468999999999999999999999999999999999
Q ss_pred HHhHhhhhcccchhhhHHHHHHHHhHHHHHhhhhhhhHHHHhhHHH
Q 000440 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 805 (1509)
Q Consensus 760 ~a~i~IQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~ 805 (1509)
++++.|+ |||.+.. ..++..||+.+|++..++.|.+
T Consensus 720 a~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCC
Confidence 9999998 7774432 2456678999999999888764
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.7e-181 Score=1708.43 Aligned_cols=667 Identities=46% Similarity=0.783 Sum_probs=626.8
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000440 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1509)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~A 139 (1509)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCC------CCCccHHHHHHhhchHHHhhcCccccCCCCCC
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~ie~~il~snpilEaFGNAkT~~N~NSS 213 (1509)
|+.|...++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred CcccEEEEEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCC-CCCccccCCCccccC
Q 000440 214 RFGKFVELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALD 291 (1509)
Q Consensus 214 Rfgk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~ 291 (1509)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78999999999876 89999999876 478
Q ss_pred CCCcHHHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHH
Q 000440 292 GVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDA 371 (1509)
Q Consensus 292 ~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1509)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..++.||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999998654555555543 47999999999999999999
Q ss_pred HhhcccccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHh
Q 000440 372 LINRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1509)
Q Consensus 372 l~~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1509)
||++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccc-cchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhc
Q 000440 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK 530 (1509)
Q Consensus 452 NyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~ 530 (1509)
|||||||||+|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCc--cCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcC----------cCC
Q 000440 531 SNKRF--IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE----------SSK 598 (1509)
Q Consensus 531 ~~~~~--~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~----------~~~ 598 (1509)
+++.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..... ..+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 445556789999999999999999999999999999999999999999999999764221 112
Q ss_pred CCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHH
Q 000440 599 SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLH 678 (1509)
Q Consensus 599 ~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ 678 (1509)
.++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCC-CCCCccHHHHHHHHHhcCCC--ccccccceeeeeccchhhhhhhH
Q 000440 679 RFGVLAPDVL-DGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
||++|++... ....|+++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998764 23457899999999998764 89999999999999999999876
No 10
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-178 Score=1535.52 Aligned_cols=791 Identities=40% Similarity=0.673 Sum_probs=713.2
Q ss_pred ccCcEEEEeCCCCCeEeEEEEEecCCeEEEEe--CCCcEEEEeCCcccCCCCCCCCCCcCccccCCCCChHHHHHHHHHH
Q 000440 8 IVGSHVWVEHPELAWVDGEVFKISAEEVHVHT--TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAAR 85 (1509)
Q Consensus 8 ~~g~~vw~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R 85 (1509)
.-|..||++|+.++|+.|.|++++.+.++++. ..|.+++.-.+++++...+ ++..+||-|.|-||||+++|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45899999999999999999999988888865 3577788888889887533 56889999999999999999999999
Q ss_pred hhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHH
Q 000440 86 YELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1509)
Q Consensus 86 ~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1509)
|..|.||||+.+||||||||..++.+|++++|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEEecCCCcccceeeeeecccCcccc
Q 000440 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1509)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRvv 245 (1509)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-++.|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 25799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCc--------------------------cccCCCCcHHH
Q 000440 246 QISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC--------------------------YALDGVDDTEE 298 (1509)
Q Consensus 246 ~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1509)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8999999999999999999985411 11223789999
Q ss_pred HHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcc
Q 000440 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1509)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1509)
|..+..||+.+|++++|...||+++|||||||||+|.+..+ ..+|.+.+ .+...|..+|+|||+|+++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34566665 4566899999999999999999999999
Q ss_pred cccC-----CceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHh
Q 000440 377 MVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1509)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1509)
+.+. |..|.+||.+.+|..+||||||++|++||||||.+||.++... .++.|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 9753 4578999999999999999999999999999999999999643 468999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcC
Q 000440 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1509)
Q Consensus 452 NyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1509)
||+|||||++||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+++++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCC----------CCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCC--C
Q 000440 532 NKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK--S 599 (1509)
Q Consensus 532 ~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~ 599 (1509)
|-+..-||.+ ...|.|+||||.|+|++..|+|||.|.+...+..|+..|+++||.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888888653 357999999999999999999999999999999999999999999999975433322 1
Q ss_pred C--CCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHH
Q 000440 600 S--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1509)
Q Consensus 600 ~--~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~ 677 (1509)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|++||...++.||.|+|++..++++..|||+|..|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCccHHHHHHHHHhcCCC--ccccccceeeeeccchhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHH
Q 000440 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEF 755 (1509)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~ 755 (1509)
.-|+-.+|+.+. ..|++-.|+.++..+|++ +|++|.||||||+|..+..+++........+..|++ +..|+.|.+|
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 999988887654 469999999999999985 899999999999999999999877776666666654 6789999999
Q ss_pred HHHHHHhHhhhhcccchhhhHHHHHHHHhHHHHHhhhhhhhHHHHhhHHHHHhHHHHHHH
Q 000440 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQT 815 (1509)
Q Consensus 756 ~~~r~a~i~IQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs 815 (1509)
.+...++..+-..- .+- ..|..+.+++|+++|||++|+++........++-+
T Consensus 793 kk~q~~a~sVIKLk----NkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLK----NKI----IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHhhhhhhheeehh----hHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 88766654432211 111 12446778999999999999998876554444433
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.1e-180 Score=1686.50 Aligned_cols=656 Identities=48% Similarity=0.830 Sum_probs=615.1
Q ss_pred CCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000440 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1509)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay 140 (1509)
..++|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++. .+|||||+||++||
T Consensus 7 ~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay 83 (677)
T cd01383 7 LDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAY 83 (677)
T ss_pred ccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998 99999999998764 46999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEE
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1509)
+.|...++||||||||||||||||++|++|+|||.+++. ..|+++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~ 158 (677)
T cd01383 84 NEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIE 158 (677)
T ss_pred HHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEE
Confidence 999999999999999999999999999999999999754 369999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000440 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1509)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1509)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 159 l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f 238 (677)
T cd01383 159 IHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRF 238 (677)
T ss_pred EEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhccccc
Q 000440 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1509)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1509)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+ .+.++.||.||||++++|.++||++++.+
T Consensus 239 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 315 (677)
T cd01383 239 HTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHV 315 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEe
Confidence 999999999999999999999999999999999998754433333333 34699999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCeEEeeeccccccCCCCCCHHHHHhhhhhhHH
Q 000440 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1509)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1509)
+++.++++++++||..+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 316 ~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkL 395 (677)
T cd01383 316 NNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERL 395 (677)
T ss_pred CCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754 3468999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000440 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1509)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1509)
||+|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|+.|.+|
T Consensus 396 Q~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 475 (677)
T cd01383 396 QQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE 475 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCC-----Cc------CcCCCCCCcchhH
Q 000440 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE------ESSKSSKFSSIGS 607 (1509)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~------~~~~~~~~~tv~~ 607 (1509)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. ...+.++..||++
T Consensus 476 ~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~ 552 (677)
T cd01383 476 R--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGT 552 (677)
T ss_pred C--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHH
Confidence 5 578999999999999999999999999999999999999999876 55421 10 0112235689999
Q ss_pred HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCC
Q 000440 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1509)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1509)
+|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|++||++|++..
T Consensus 553 ~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 632 (677)
T cd01383 553 KFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLEN 632 (677)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCccHHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
.. ..|++..|+.||+.+++ ++|++|+||||||+++++.||..|
T Consensus 633 ~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 633 IA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 54 35788999999998876 489999999999999999999875
No 12
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.6e-180 Score=1691.62 Aligned_cols=662 Identities=45% Similarity=0.775 Sum_probs=626.3
Q ss_pred CcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000440 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1509)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~ 142 (1509)
|+|||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000440 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1509)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1509)
|...++||||||||||||||||++|++|+||+.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2346999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000440 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1509)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1509)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1509)
|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.+ .+.++.||.||||++++|.++||+|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2334443 3479999999999999999999999999998
Q ss_pred ----ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccC-CCCCeEEeeeccccccCCCCCCHHHHHhhhhhh
Q 000440 382 ----EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1509)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 456 (1509)
|.+++|+++++|..+||+|||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhc-CcccccccccccccCC-CCChHHHHHHHHHHhcCCCC
Q 000440 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKR 534 (1509)
Q Consensus 457 kLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 534 (1509)
|||++||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHH
Q 000440 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1509)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1509)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++|+.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433322 2356899999999999
Q ss_pred HHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCC-CCCc
Q 000440 615 SLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYD 693 (1509)
Q Consensus 615 ~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~ 693 (1509)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|++.... ...|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987432 2458
Q ss_pred cHHHHHHHHHhcCC--Cccccccceeeeecc-chhhhhhhH
Q 000440 694 DKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1509)
Q Consensus 694 ~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 731 (1509)
+++.|+.||..+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999876 489999999999998 688898765
No 13
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.7e-179 Score=1681.28 Aligned_cols=661 Identities=41% Similarity=0.727 Sum_probs=617.8
Q ss_pred CCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000440 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1509)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~ 141 (1509)
+|+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++.++.|++...+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEE
Q 000440 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1509)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l 221 (1509)
.|...++||||||||||||||||++|++|+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 24699999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000440 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYL 300 (1509)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 300 (1509)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999899999999999
Q ss_pred HHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC--CCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccc
Q 000440 301 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1509)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1509)
.|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ...++.||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987532 22334443 3469999999999999999999999999
Q ss_pred cCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHH
Q 000440 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1509)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1509)
+++|.+.+|+++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4578999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000440 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1509)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1509)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||++|++|+...|++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcC-----------cCCCCCCcchhH
Q 000440 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE-----------SSKSSKFSSIGS 607 (1509)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1509)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999653210 011224579999
Q ss_pred HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCC
Q 000440 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1509)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1509)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCccHHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
.....+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44332334445778887765 479999999999999999999876
No 14
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=4.9e-179 Score=1682.46 Aligned_cols=663 Identities=41% Similarity=0.681 Sum_probs=622.0
Q ss_pred CCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccC-cCCCCchHHHHHHHHH
Q 000440 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVAY 140 (1509)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~-~~~~~PHi~aia~~Ay 140 (1509)
.++|||+.|++|||++|||+|+.||..++||||+|++|||||||+.+| +|+++.++.|++.. .+++|||||+||++||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998 99999999999887 7999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEE
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1509)
+.|...++||||||||||||||||++|++|+|||.+++... ....|+++|++|||||||||||||++|+||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 99999999999999999999999999999999999975432 23579999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000440 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1509)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1509)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.++|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999988889999999998777899999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC---CCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcc
Q 000440 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1509)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1509)
.+|+.||+.|||+++++..||+|||||||||||+|.+..+ .+++.+.+ .+.+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999987532 34444444 35799999999999999999999999
Q ss_pred cccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCC---CCCeEEeeeccccccCCCC-CCHHHHHhh
Q 000440 377 MVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP---NSRTIIGVLDIYGFESFKL-NSFEQFCIN 452 (1509)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfeQlciN 452 (1509)
+.+++|.+++|++++||..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 999999999999999999999999999999999999999999998643 3468999999999999999 999999999
Q ss_pred hhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCC
Q 000440 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSN 532 (1509)
Q Consensus 453 yaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 532 (1509)
|||||||++|++|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|++||++|++|+++.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcC---------CCCCCc
Q 000440 533 KRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKFS 603 (1509)
Q Consensus 533 ~~~~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~ 603 (1509)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+..+.... ++.+.+
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999976432211 122347
Q ss_pred chhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcc
Q 000440 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1509)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l 683 (1509)
||+++|+.||++||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccHHHHHHHHHhcCCC--ccccccceeeeeccchhhhhhhHh
Q 000440 684 APDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1509)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~ 732 (1509)
+|... ...++.|+.||+.++++ +|++|+||||||++++..||....
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 98743 23467899999998874 899999999999999999987543
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.3e-178 Score=1684.42 Aligned_cols=665 Identities=43% Similarity=0.727 Sum_probs=619.8
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000440 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1509)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~A 139 (1509)
.|.++|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+|++|+++.+..|+++..+++|||||+||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEE
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1509)
|+.|...++||||||||||||||||++|++|+|||.+++++ .+|+++|+++||||||||||||++||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999986542 57999999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCC------------
Q 000440 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------ 286 (1509)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~------------ 286 (1509)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC-CCcccccCccch
Q 000440 287 --------------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSR 351 (1509)
Q Consensus 287 --------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~ 351 (1509)
|..++++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 23467899999999999999999999999999999999999999999987432 23333332 345
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhcccc-----cCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 000440 352 FHLNTTAELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNS 426 (1509)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~ 426 (1509)
..+..||.||||++++|.++||+|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.++..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 679999999999999999999999988 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEeeeccccccCCCCCCHHHHHhhhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCccccccc
Q 000440 427 RTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIAL 506 (1509)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~l 506 (1509)
..+||||||||||+|+.|||||||||||||||||+|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCccCCCCC----------CCceEEEeeccceeeeccchhhhccccchHHHHHH
Q 000440 507 LDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVL 576 (1509)
Q Consensus 507 Ldee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~l 576 (1509)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988877542 35799999999999999999999999999999999
Q ss_pred HhhCCchhhhhcCCCCCcCc---C--CCCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHh
Q 000440 577 LTASKCPFVSGLFPPLPEES---S--KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQL 651 (1509)
Q Consensus 577 l~~S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QL 651 (1509)
|++|+++||+.||+...... . +..++.||+++||.||+.||++|++|+||||||||||+.+.|+.||...|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999998643211 1 122567999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCCCCccHHHHHHHHHhcCCC--ccccccceeeeeccchhhhhh
Q 000440 652 RCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDA 729 (1509)
Q Consensus 652 r~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~ 729 (1509)
||+||||+|||+++|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999987553 357899999999998764 899999999999999999997
Q ss_pred hH
Q 000440 730 RR 731 (1509)
Q Consensus 730 ~r 731 (1509)
+.
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2.4e-176 Score=1645.39 Aligned_cols=639 Identities=39% Similarity=0.709 Sum_probs=602.0
Q ss_pred CcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000440 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1509)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~ 142 (1509)
.+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++.+..|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000440 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1509)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1509)
|...++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 257999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000440 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DT 296 (1509)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~-~~l~L~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1509)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999887777775 46
Q ss_pred HHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCC---CCcccccCccchHHHHHHHHhcCCCHHHHHHHHh
Q 000440 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALI 373 (1509)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 373 (1509)
++|.+|+.||+.|||+++++..||+|||||||||||+|.+... .+.+.+.+ ...++.||.||||+.++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 23333433 45799999999999999999999
Q ss_pred hcccccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCC-----CCeEEeeeccccccCCCCCCHHH
Q 000440 374 NRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQ 448 (1509)
Q Consensus 374 ~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 448 (1509)
++++.++++.+++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986532 46799999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHH
Q 000440 449 FCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQT 528 (1509)
Q Consensus 449 lciNyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 528 (1509)
||||||||||||+|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHH
Q 000440 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1509)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1509)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888899999999999999999999999999999999999887 589999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCC
Q 000440 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1509)
Q Consensus 609 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1509)
||.||++||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred CCCCccHHHHHHHHHhcCCCccccccceeeeeccchhhhhhhH
Q 000440 689 DGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 689 ~~~~~~~~~~~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=4.2e-175 Score=1655.06 Aligned_cols=667 Identities=54% Similarity=0.913 Sum_probs=631.0
Q ss_pred CCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000440 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1509)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay 140 (1509)
..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.+..|+++..+++|||||+||++||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEE
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1509)
+.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++|+||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 23579999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000440 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1509)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1509)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcc-cccCccchHHHHHHHHhcCCCHHHHHHHHhhcccc
Q 000440 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1509)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1509)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.. .+. +.+.++.||.||||++++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999875432221 122 34579999999999999999999999999
Q ss_pred cCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHH
Q 000440 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1509)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1509)
+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998777889999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000440 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1509)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1509)
|++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||.+.+++|+.|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHH
Q 000440 539 K-LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 617 (1509)
Q Consensus 539 ~-~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~ 617 (1509)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++|+.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 467799999999999999999999999999999999999999999999998754433344467899999999999999
Q ss_pred HHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCC-CCccHH
Q 000440 618 ETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKV 696 (1509)
Q Consensus 618 ~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~ 696 (1509)
++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875432 246899
Q ss_pred HHHHHHHhcCC--CccccccceeeeeccchhhhhhhHh
Q 000440 697 ACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1509)
Q Consensus 697 ~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 732 (1509)
.|+.||+.+++ ++|++|+||||||++++..||..|.
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999875 5899999999999999999998873
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.3e-175 Score=1508.70 Aligned_cols=695 Identities=41% Similarity=0.720 Sum_probs=648.2
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000440 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1509)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~A 139 (1509)
...|+|||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|.|++..+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 34799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEE
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1509)
|++|.-+.+|||||||||||||||++||+||+|++.+++ .+.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3455567889999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000440 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1509)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1509)
+|+|+..|..+|++|.+|||||||||.|.++||||||||||+. |+.+.|..|++..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccc
Q 000440 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1509)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1509)
|++|+.||+++||.+++|+.||++||||||||||.|.+.. ..+.+.+. +.++-.|.|||||...|++.||.|.+.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999732 33344442 368899999999999999999999987
Q ss_pred cC----CceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCC-CCeEEeeeccccccCCCCCCHHHHHhhh
Q 000440 379 TP----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1509)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1509)
+. .+++.+||+++||.+.||||||+||.+||||||++||.++...++ ...+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 53 579999999999999999999999999999999999999975433 6789999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhc-CcccccccccccccCC----CCChHHHHHHHHHH
Q 000440 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQT 528 (1509)
Q Consensus 454 aNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p----~~~d~~~~~kl~~~ 528 (1509)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||. .|.||+++|||.|-.. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4679999999999754 36799999999999
Q ss_pred hcCCCCccCCCCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCcCCCCCCcchhHH
Q 000440 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1509)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1509)
+++|++|..- ...|+|+||||+|+||++||.+||||.|..|++.|++.|+++|++.||+...+. .+..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~-dskrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDA-DSKRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcc-cccCCCCCchhh
Confidence 9999999753 478999999999999999999999999999999999999999999999875443 334467899999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCCC
Q 000440 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1509)
Q Consensus 609 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1509)
.++|-++|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CC-CCccHHHHHHHHHhcCC--Cccccccceeeeeccc-hhhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHhHh
Q 000440 689 DG-NYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIV 764 (1509)
Q Consensus 689 ~~-~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~ 764 (1509)
.. ..|++.+|+.||+...+ ++||+|.||||++..- +-.||.+|.......|.+||+.||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 24889999999998755 5899999999999875 56789999999999999999999999999999888876554
Q ss_pred h
Q 000440 765 L 765 (1509)
Q Consensus 765 I 765 (1509)
|
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 3
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4.7e-173 Score=1642.28 Aligned_cols=662 Identities=53% Similarity=0.870 Sum_probs=621.6
Q ss_pred CcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000440 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1509)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~ 142 (1509)
+++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000440 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1509)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1509)
|...++||||||||||||||||++|++|+||+.++++. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 256999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000440 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1509)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1509)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999988899999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCc--ccccCccchHHHHHHHHhcCCCHHHHHHHHhhccccc
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1509)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+. +.+. +.+.++.||.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 3333 345799999999999999999999999999
Q ss_pred CCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHH
Q 000440 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 459 (1509)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq 459 (1509)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887677899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCCCccC-C
Q 000440 460 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-P 538 (1509)
Q Consensus 460 ~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~-p 538 (1509)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||.+.|++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998644 4
Q ss_pred CCCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcC-----------cCCCCCCcchhH
Q 000440 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE-----------SSKSSKFSSIGS 607 (1509)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1509)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999863221 112236689999
Q ss_pred HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccCCC
Q 000440 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1509)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1509)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCccHHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
........+.|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333344459999998876 489999999999999999999765
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.1e-172 Score=1630.69 Aligned_cols=660 Identities=31% Similarity=0.500 Sum_probs=591.4
Q ss_pred cCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000440 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1509)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m 143 (1509)
+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEEe
Q 000440 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 223 (1509)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f 223 (1509)
...++||||||||||||||||++|++|+|||.+++..+. ....++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~--~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG--RVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc--ccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999865331 222357999999999999999999999999999999999
Q ss_pred cCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCC-ccccCCCCcHHHHHH
Q 000440 224 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN-CYALDGVDDTEEYLA 301 (1509)
Q Consensus 224 ~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~-~~~~~~~dd~~~f~~ 301 (1509)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...+++||+++|.+
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765543333322 334678999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1509)
|+.||+.|||+++++.+||+|||||||||||+|.+.. +.+.+.+ .+.++.||.||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3469999999999999999999988776553
Q ss_pred c-------------eEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeEEeeeccccccCCCC-----
Q 000440 382 E-------------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL----- 443 (1509)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1509)
+ .+..++++.+|..+||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678999999999999999999999999999999998766678999999999999984
Q ss_pred -CCHHHHHhhhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccc-cchHhHHHhhhcCc--------------ccccccc
Q 000440 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALL 507 (1509)
Q Consensus 444 -NsfeQlciNyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldlie~~~--------------~Gil~lL 507 (1509)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999987655 79999999999865 4999999
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCccCCC------CCCCceEEEeeccc--eeeeccchhhhccccc-hHHHHHHHh
Q 000440 508 DEACMFPKSTHETFAQKLYQTFKSNKRFIKPK------LSRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLT 578 (1509)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~Hyag~--V~Y~~~~flekN~d~~-~~~~~~ll~ 578 (1509)
||||++|++||++|++||++.|++|++|.+++ .....|+|+||||+ |+|++.||+|||||.+ +.+++.+|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999998887622 13468999999995 9999999999999965 689999999
Q ss_pred hCCchhhhhcCCCCCc-------------CcC----------C--------CCCCcchhHHHHHHHHHHHHHHcccCCee
Q 000440 579 ASKCPFVSGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1509)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~L~~~l~~t~~h~ 627 (1509)
+|++++|+.||..... ..+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999964210 000 0 01345899999999999999999999999
Q ss_pred EEecCCCCCCC----------------------CCCCChhhHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcccC
Q 000440 628 IRCVKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 685 (1509)
Q Consensus 628 irCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~ 685 (1509)
|||||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999974 78999999999999999999999999999999999999999999987
Q ss_pred CCCC------CCCccHHHHHHHHHhcCC--CccccccceeeeeccchhhhhhhH
Q 000440 686 DVLD------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1509)
Q Consensus 686 ~~~~------~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1509)
.... ...|++++|+.||+.+++ ++|+||+||||||+++++.||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6431 235889999999999876 489999999999999999999876
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=3.3e-165 Score=1592.54 Aligned_cols=653 Identities=50% Similarity=0.877 Sum_probs=579.7
Q ss_pred cCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000440 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1509)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m 143 (1509)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++++..|+++..+++||||||||++||+.|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCC-CCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEEEEE
Q 000440 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1509)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1509)
++.++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23457999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000440 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1509)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1509)
||.+|.++||+|.+||||||||+.|++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecCCCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000440 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1509)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1509)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..++.||.||||++++|.++||++++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765555555553 359999999999999999999999999999
Q ss_pred ceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCeEEeeeccccccCCCCCCHHHHHhhhhhhHHHH
Q 000440 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 460 (1509)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~ 460 (1509)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhcCCccccccc-cchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHh-cCCCCccCC
Q 000440 461 HFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKP 538 (1509)
Q Consensus 461 ~f~~~~f~~eq~~y~~Egi~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p 538 (1509)
+|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999988
Q ss_pred C----CCCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCc--------------C-----
Q 000440 539 K----LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE--------------E----- 595 (1509)
Q Consensus 539 ~----~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~----- 595 (1509)
+ .....|+|+||||+|+|++.||++||+|.++++++++|+.|+++||+.||..... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 4678999999999999999999999999999999999999999999999976431 0
Q ss_pred --cCCCCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcCCCcccCh
Q 000440 596 --SSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1509)
Q Consensus 596 --~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~gyp~r~~~ 673 (1509)
.....+.+||+++|+.||++||++|++|+||||||||||+.+.|+.||...|.+|||++||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCC----CCccHHHHHHHHHhcCC--Cccccccceeeee
Q 000440 674 YEFLHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 720 (1509)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr 720 (1509)
.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999986532 36889999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=6.3e-114 Score=1091.90 Aligned_cols=751 Identities=36% Similarity=0.577 Sum_probs=663.2
Q ss_pred CCCcCccccCCCCChHHHHHHHHHHhhcCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000440 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1509)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay 140 (1509)
..+++||+.|..++|+.+++||..||..+.||||+|.+|++||||+.+|.+|.+..+..|.+...+++||||||+|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhc-CCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCCcccEE
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG-GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~-~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1509)
+.|++...||||+||||||||||++|+++++||+.++ +. ...++++|+.+||+|||||||+|.+|||||||||||
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~----~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGN----NSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCC----CCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 9999999999999999999999999999999999998 33 256889999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeecccCccccccCCCCccceeeecccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcHH
Q 000440 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDTE 297 (1509)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~-~~~dd~~ 297 (1509)
++.|...|.|.||.+.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+.+|.||+++.+..+ ++.+|..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999 6778899999999999999999999999 9999999
Q ss_pred HHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeEEEecC--CCCcccccCccchHHHHHHHHhcCCCHHHHHHHHhhc
Q 000440 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1509)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~ 375 (1509)
+|..+..||..+||+.+++.+||+++|||||+|||.|.+-. ..|.+.+.+ ...+..+|.||+++.+.|.+++|.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999997532 234455544 3479999999999999999999999
Q ss_pred ccccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCC--CCeEEeeeccccccCCCCCCHHHHHhhh
Q 000440 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1509)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1509)
+..++++.+..+++.++|.++||++||.+|++||.|||.+||..+..... +...||||||||||+|+.|||||+||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654 4789999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccccccCCCCChHHHHHHHHHHhcCCC
Q 000440 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNK 533 (1509)
Q Consensus 454 aNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~ 533 (1509)
|||+||++||+|||..||+||..|+|+|..|.|.||++|+|+|..||.||+.+|||||.+|+++|.+++.|+..+|+.+.
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~ 532 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNN 532 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccCCCC-CCCceEEEeeccceeeeccchhhhccccchHHHHHHHhhCCchhhhhcCCCCCcCc----------------
Q 000440 534 RFIKPKL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES---------------- 596 (1509)
Q Consensus 534 ~~~~p~~-~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---------------- 596 (1509)
.|..|+. ....|+|.||||.|.|++.||+|||+|.++.+++.++++|.+.++..++...+...
T Consensus 533 ~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~ 612 (1062)
T KOG4229|consen 533 LYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVP 612 (1062)
T ss_pred ccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhccccccc
Confidence 8877765 46799999999999999999999999999999999999999888877664311000
Q ss_pred -------------------------------------------------C------------------------------
Q 000440 597 -------------------------------------------------S------------------------------ 597 (1509)
Q Consensus 597 -------------------------------------------------~------------------------------ 597 (1509)
.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 613 LEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred chhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 0
Q ss_pred -C----------CC--------------C--------------------------------------------------C
Q 000440 598 -K----------SS--------------K--------------------------------------------------F 602 (1509)
Q Consensus 598 -~----------~~--------------~--------------------------------------------------~ 602 (1509)
+ .. + .
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred hcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCcccc
Confidence 0 00 0 0
Q ss_pred cchh----------------HHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhccchhHHHhhhhcC
Q 000440 603 SSIG----------------SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAG 666 (1509)
Q Consensus 603 ~tv~----------------~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i~i~~~g 666 (1509)
..++ ..+......++..+....|.|++|++-|..+....|+...|..|+++.|+++..++...+
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~ 852 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSL 852 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecc
Confidence 0011 122334455777788889999999999988888899999999999999999999999999
Q ss_pred CCcccChHHHHHHhhcccCCCCCCCCccHHHHHHHHHhc--CCCccccccceeeeeccchhhhhhhH-hhhhhhhHHHHH
Q 000440 667 YPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKM--GLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARIIQ 743 (1509)
Q Consensus 667 yp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~--~~~~~~iGkTkVFlr~~~~~~Le~~r-~~~l~~aa~~IQ 743 (1509)
|+..+++.+|..-+++..|.... .........+ ..++++.|++++|+.......++..- .+....-+...|
T Consensus 853 ~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 926 (1062)
T KOG4229|consen 853 YFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQ 926 (1062)
T ss_pred ccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHH
Confidence 99999999999999988773211 1111122211 34689999999999887665443332 222221367889
Q ss_pred HHhhhhHHHHHHHHHHHHhHhhhhcccchhhhHHHH-HHHHhHHHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHH
Q 000440 744 RQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVA 822 (1509)
Q Consensus 744 ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laR~~~~-~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~a 822 (1509)
++++....|+.+.++..+.+.+| |++++.|+... ......++.-+|..|+.+..+..+...+.+.+.+|+.+++...
T Consensus 927 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1004 (1062)
T KOG4229|consen 927 KWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAY 1004 (1062)
T ss_pred HHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchh
Confidence 99999999999999999999999 88888887554 2334567888999999999999999999999999998888766
Q ss_pred HHHH
Q 000440 823 RNEF 826 (1509)
Q Consensus 823 Rr~~ 826 (1509)
+..+
T Consensus 1005 ~~~~ 1008 (1062)
T KOG4229|consen 1005 TMIF 1008 (1062)
T ss_pred hhhH
Confidence 6554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=100.00 E-value=1.3e-32 Score=327.50 Aligned_cols=298 Identities=17% Similarity=0.313 Sum_probs=237.3
Q ss_pred HHHhhhcCCCCcCCcchhHHHHHHHHHhhhc--chhhh----hHHHHHHHHHHHhHhccc-cccchhhHHHHHHHHHHHH
Q 000440 1101 LIKCVSQNLGFSRSKPVAASVIYKCLLHWRS--FEVER----TTVFDRIIQTIASAIEVQ-DNNDVLAYWLSNSSTLLLL 1173 (1509)
Q Consensus 1101 L~~~i~~~~~~~~~~p~pA~il~~cl~~~~~--~~~~~----~~ll~~ii~~i~~~i~~~-~d~~~lafWLSN~~~LL~~ 1173 (1509)
|...+..+.+...++..|.|- |..-.|++. +..++ ..||.++++++.++++.+ ++-..|+|||+|++++|||
T Consensus 554 L~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhf 632 (1629)
T KOG1892|consen 554 LSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHF 632 (1629)
T ss_pred HHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHH
Confidence 333333444444455444441 333344443 44444 478999999999999966 4455999999999999999
Q ss_pred HHHHhhhcCCCCCCcccccccccchhhhhhccccCCCCcCCcccccCCccccchhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 000440 1174 LQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIY 1253 (1509)
Q Consensus 1174 Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~k~p~~~fkq~L~~l~~~iy 1253 (1509)
++++ |.+..+ .-+. +..|..+|+.+|
T Consensus 633 ik~D-----------------------r~ls~~-------------------~~~a------------q~vla~~vq~aF 658 (1629)
T KOG1892|consen 633 IKQD-----------------------RDLSRI-------------------TLDA------------QDVLAHLVQMAF 658 (1629)
T ss_pred HHhc-----------------------cchhhe-------------------ehhH------------HHHHHHHHHHHH
Confidence 9994 222211 1112 234999999999
Q ss_pred HHHHHHHHhhhccchhccccCCCccccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000440 1254 GMIRDNLKKDISPLLGLCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIF 1333 (1509)
Q Consensus 1254 ~~l~~~i~~~L~p~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~QlF 1333 (1509)
..|+.|++.+|++.+..++.-- ......++++|.+|+..|.+|+.|+|+..|+.|+|+|||
T Consensus 659 r~LV~clqsel~~~~~afLden-------------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLf 719 (1629)
T KOG1892|consen 659 RYLVHCLQSELNNYMPAFLDEN-------------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLF 719 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-------------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999666554210 112235678999999999999999999999999999999
Q ss_pred HhHhHHHHHHhhhc--CCCccccchhHHhhchhHHHHHHhhcccccccchHHHhhHHHHHHHHHhhcCCCcCCHHHHHHh
Q 000440 1334 SFINVQLFNSLLLR--RECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKE 1411 (1509)
Q Consensus 1334 ~fIna~lFN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~ 1411 (1509)
||||+++||+|+.. ..+|+--||--|++.|..||.||+..|.+.+++| ||..|+||++||+++|....|+..+ ..
T Consensus 720 H~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAdC--HL~ri~Qaa~lL~~~K~a~ddi~~l-~s 796 (1629)
T KOG1892|consen 720 HFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAADC--HLSRIVQAATLLTMDKYAPDDIPNL-NS 796 (1629)
T ss_pred HHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhhc--cHHHHHHHHHHHhccccChhhHHhh-cc
Confidence 99999999999998 6899999999999999999999999999988887 9999999999999998777788777 68
Q ss_pred hCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhhcccC-----CCCCCcccccCCCCCCccccc
Q 000440 1412 LCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTEDSN-----NAVSSSFLLDDDSSIPFTVDD 1476 (1509)
Q Consensus 1412 ~C~~Ln~~Ql~kiL~~Y~~d~~e~~~vs~~~i~~v~~~~~~~~~-----~~~~~~lllD~~~~~Pf~~~~ 1476 (1509)
.|++||+.|+.+||..|++++.| .++|.+++..+..+..+.+. ++..-+|--+++..+||.+|+
T Consensus 797 tCfkLNSLQ~~alLq~~~~~~~e-~~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 797 TCFKLNSLQLQALLQNYHCAPDE-PFIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred chhhcchHHHHHHHhcCCCCCCC-CCCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 99999999999999999999999 59999999999877765542 233344666888889999988
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=9.7e-28 Score=236.17 Aligned_cols=105 Identities=37% Similarity=0.665 Sum_probs=88.7
Q ss_pred HHHHHHHHhHhHHHHHHhhhcCCCccccchhHHhhchhHHHHHHhhcccccccchHHHhhHHHHHHHHHhhcCCCcCCHH
Q 000440 1327 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1406 (1509)
Q Consensus 1327 Q~f~QlF~fIna~lFN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1406 (1509)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.+ +.++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999994433 68999999999999999766666665
Q ss_pred HHHHhhCCCCCHHHHHHHHhcCccCCCC
Q 000440 1407 EITKELCPVLSIQQLYRISTMYWDDKYG 1434 (1509)
Q Consensus 1407 ~i~~~~C~~Ln~~Ql~kiL~~Y~~d~~e 1434 (1509)
.+ +++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 56 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.37 E-value=3.8e-09 Score=143.91 Aligned_cols=622 Identities=14% Similarity=0.119 Sum_probs=307.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhh--cccccCCceEeccCCHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeE
Q 000440 352 FHLNTTAELLKCDAKSLEDALIN--RVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTI 429 (1509)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~l~~--~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~ 429 (1509)
..+..|-..||+++++....+-- -.+..|+=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+
T Consensus 323 ~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKv 399 (1930)
T KOG0161|consen 323 QETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKV 399 (1930)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceec
Confidence 35667778999999886655421 11223332222211344444333333222211 1111111112222211 1234
Q ss_pred EeeeccccccCCCCCCHHHHHhhhhhhHHHHHHHHHhhhhhHHHhhhcCCccccccccchHhHHHhhhcCcccccccccc
Q 000440 430 IGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDE 509 (1509)
Q Consensus 430 IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLde 509 (1509)
.+-.++.|+... | .+++=+-|...-...+|. ....+...+++|. .+-..+|.+++-...=||..
T Consensus 400 g~e~v~k~q~~~------q--~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--- 463 (1930)
T KOG0161|consen 400 GREWVSKAQNVE------Q--VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--- 463 (1930)
T ss_pred cchhhhhcchHH------H--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc---
Confidence 555667776543 3 666666777666666664 5667778888887 34555565555322112221
Q ss_pred cccCCCCChHH----H-HHHHHHHhcCCCCccCC----CCCCCceEEEeeccceeeeccchhhhccccchHHHHHHH---
Q 000440 510 ACMFPKSTHET----F-AQKLYQTFKSNKRFIKP----KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL--- 577 (1509)
Q Consensus 510 e~~~p~~~d~~----~-~~kl~~~~~~~~~~~~p----~~~~~~F~i~Hyag~V~Y~~~~flekN~d~~~~~~~~ll--- 577 (1509)
.+-+. | .+||.+-| +|.-|..- +--+-++...||+-+ -=.+.+-|+|=. .+..+|
T Consensus 464 ------nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEE 530 (1930)
T KOG0161|consen 464 ------NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEE 530 (1930)
T ss_pred ------CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHH
Confidence 22222 1 23444444 34444321 112346777777222 112333344311 333333
Q ss_pred ----hhCCchhhhhcCCCCCcCcCCCCCCcchhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChhhHHHHhhc
Q 000440 578 ----TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRC 653 (1509)
Q Consensus 578 ----~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~ 653 (1509)
.+|...|+..|+...- ++.++|.... ..+...-+...+-+.+ |+|.-+|-..++..-.+..|+.+|+|
T Consensus 531 c~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~ 602 (1930)
T KOG0161|consen 531 CVVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQ 602 (1930)
T ss_pred HhcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHh
Confidence 2344455555543210 1222332221 3344455555555555 99999999988888889999999999
Q ss_pred cchhHHHhhhhcCCCcccChHHHHHHhhcccCCCCCCCC-----ccHHHHHHHHHhcCCCccccccceeee---eccch-
Q 000440 654 GGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNY-----DDKVACEKILDKMGLKGYQIGKTKVFL---RAGQM- 724 (1509)
Q Consensus 654 ~gvle~i~i~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~iGkTkVFl---r~~~~- 724 (1509)
++ .+.|...-.| +..+..+..++.. ......+.. -.+...-.++..+....-.|=+--|+. ++|++
T Consensus 603 s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld 677 (1930)
T KOG0161|consen 603 ST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLD 677 (1930)
T ss_pred cc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccC
Confidence 99 8877776655 6666777766655 211111110 112222233333322211111111111 11111
Q ss_pred --hhhhhhHhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHhHhhhh--cccchhh-----hHHHHHHHHhHHH---HHhhh
Q 000440 725 --AELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQS--YWRGILA-----CKLYEQLRREAAA---LKIQK 792 (1509)
Q Consensus 725 --~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~--~~Rg~la-----R~~~~~~r~~~AA---i~IQ~ 792 (1509)
..|..+|-.-+-.. +.|++ .||-.|..|...+.-.-.+.. .-.|+.. ++.+..+...... ....-
T Consensus 678 ~~lvl~QLrcngVLEg-IRicR--~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKv 754 (1930)
T KOG0161|consen 678 APLVLNQLRCNGVLEG-IRICR--QGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKV 754 (1930)
T ss_pred HHHHHHHhhccCcHHH-HHHHH--hhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceee
Confidence 12222222211111 22221 344444433322111001111 1112221 1111111100000 00011
Q ss_pred hhh----hHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 000440 793 NFH----SYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQ-TKAAIIIEAYLRRHTACSYY---KSLKKAAVITQCG 864 (1509)
Q Consensus 793 ~~R----~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~-~~aA~~IQ~~~R~~~~r~~y---~~~~ka~~~iQ~~ 864 (1509)
+|| +.+.-.+-..+...++.+|+.+||+++|+.+.++.+ ..|+.+||++.|.|+..+.| +-..+.-..+++.
T Consensus 755 FfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~ 834 (1930)
T KOG0161|consen 755 FFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVT 834 (1930)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 112 222223333455667899999999999999877665 56888999999999887654 2223334444444
Q ss_pred hHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 865 WRRRVARRE---LR----NLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQV 937 (1509)
Q Consensus 865 ~R~~~ark~---l~----~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~ql 937 (1509)
.+....++. +. .+...+.....+.....++..+..+++..++.++....+.++ ....+.+...+++.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee----~~~~~~~~k~~le~~l 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEE----LLERLRAEKQELEKEL 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 433333222 22 223334444556666667777777777777777666655555 5566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 938 EEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKL 1017 (1509)
Q Consensus 938 eel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el 1017 (1509)
.++..++..++++...+..+..... +++...++.+++++..+.+++.++...+.++..+++++..+++.+.++.++.
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~---~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLE---QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666655555444432211 2344456667777777777777777777777777666666666555555555
Q ss_pred HHHHHHHHHHH
Q 000440 1018 EDTEEKNQVIR 1028 (1509)
Q Consensus 1018 ~~~eee~~~L~ 1028 (1509)
+.+|+.+..+.
T Consensus 988 k~lEe~~~~l~ 998 (1930)
T KOG0161|consen 988 KELEERIRELQ 998 (1930)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.63 E-value=4.1e-08 Score=107.50 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCC--ccHHHHHHhhchHHHhhc-CccccC
Q 000440 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEG--RTVEQQVLESNPVLEAFG-NAKTVR 208 (1509)
Q Consensus 132 i~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~--~~ie~~il~snpilEaFG-NAkT~~ 208 (1509)
||+.+..++..|+ ++.|+||+..|+||||||+|..- .....+ ..+-+.+++..+..++++ +|.|.+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G----------~~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~ 76 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEG----------KREGAGIIPRTVTDVIDLMDKGNANRTTAATAM 76 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCC----------CCCCCCcchHHHHHHHHHHhhccccccccccCC
Confidence 8888888898887 57999999999999999987431 111111 112223778888999999 999999
Q ss_pred CCCCCCcccEEEEEecCCCccc
Q 000440 209 NNNSSRFGKFVELQFDKNGRIS 230 (1509)
Q Consensus 209 N~NSSRfgk~~~l~f~~~g~i~ 230 (1509)
|++|||+..+++|++.......
T Consensus 77 N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 77 NEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred CCccCcccEEEEEEEEEeecCC
Confidence 9999999999999997654443
No 27
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.33 E-value=1.5e-06 Score=70.30 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.8
Q ss_pred CcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEEEeCC
Q 000440 10 GSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNIS 50 (1509)
Q Consensus 10 g~~vw~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 50 (1509)
+.+|||||++++|+.|+|++.+|+.++|.+.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999988764
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.30 E-value=1.1e-06 Score=112.23 Aligned_cols=123 Identities=21% Similarity=0.268 Sum_probs=87.9
Q ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHhHhhhhcccchhhhHHHHHHHH--------hHHHHHhhhhhhhHHHHhhHHH
Q 000440 734 VLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRR--------EAAALKIQKNFHSYTARTSYLT 805 (1509)
Q Consensus 734 ~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laR~~~~~~r~--------~~AAi~IQ~~~R~~~~Rk~y~~ 805 (1509)
....+|..||+++|+|+.|+.|+.+|.-++.||+.+||+..|+.|..+-. --++..+|+-+|||..|..+..
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34678999999999999999999999999999999999999999976531 1245566777777766666666
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 806 ARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKK 856 (1509)
Q Consensus 806 ~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~k 856 (1509)
.-.+++.||..+|-+..-++.-..+.++|++.||+++|.+.++..|+++..
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555666666666666554443334445666666666666666665555433
No 29
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.19 E-value=8.5e-06 Score=104.33 Aligned_cols=87 Identities=32% Similarity=0.385 Sum_probs=80.8
Q ss_pred HhHHHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 862 (1509)
Q Consensus 783 ~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ 862 (1509)
...+++.||+.+|+|..|+.|..+|.+++.+|+.+||.++|+ ... +..||+.||+.+|++..|+.|.....+++.+|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~q 748 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQ 748 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999 223 67899999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q 000440 863 CGWRRRVARR 872 (1509)
Q Consensus 863 ~~~R~~~ark 872 (1509)
+..|++.+|.
T Consensus 749 s~~r~~~~r~ 758 (862)
T KOG0160|consen 749 SGVRAMLARN 758 (862)
T ss_pred HHHHHHHhcc
Confidence 9999999988
No 30
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.16 E-value=0.00067 Score=89.88 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 862 (1509)
Q Consensus 786 AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ 862 (1509)
.++.||+.|||+..|++|......+..+|...+|+..|+.........+++.+|+.|+....|..|+.....+..+|
T Consensus 747 ~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 747 IATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333333444444444444444444444444444444
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.81 E-value=3.7e-05 Score=98.62 Aligned_cols=114 Identities=26% Similarity=0.279 Sum_probs=77.4
Q ss_pred HhHhhhhcccchhhhHHHHHHHHhHHHHHhhhhhhhHHHHhhHHHHHh----------HHHHHHHHHHHHHHHHHHHHHH
Q 000440 761 AAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARS----------SAIQLQTGLRAMVARNEFRFRK 830 (1509)
Q Consensus 761 a~i~IQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~----------a~i~IQs~~Rg~~aRr~~~~~~ 830 (1509)
++..||..+|||..|+.|.-+|. -+++||+.+|||..|+.|.++-. ++..+|..+||+..|+...+
T Consensus 812 aa~~iq~~f~~yk~r~~~l~tr~--p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~-- 887 (975)
T KOG0520|consen 812 AASRIQKKFRGYKQRKEFLSTRQ--PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE-- 887 (975)
T ss_pred HHHHhhhhhhhHHhhhhhcccCC--ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc--
Confidence 56677777777777777766663 46677777777777777665432 33455566666655554432
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000440 831 QTKAAIIIEAYLRRHTAC--SYYKSLKKAAVITQCGWRRRVARRELRNLK 878 (1509)
Q Consensus 831 ~~~aA~~IQ~~~R~~~~r--~~y~~~~ka~~~iQ~~~R~~~ark~l~~lk 878 (1509)
++.||+.||...|-|..- ..|.++.++++.||+.+|...++..++++.
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 234788888888888776 667888888888888888888886666554
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.16 Score=63.33 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=16.6
Q ss_pred cCCCccccchhHHhhchhHHHHHHh
Q 000440 1347 RRECCSFSNGEYVKAGLAELEQWCY 1371 (1509)
Q Consensus 1347 r~~~cs~s~G~qIr~nls~Le~W~~ 1371 (1509)
.++-.-|--|.-+.-+=-+.--|+=
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWFP 1032 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWFP 1032 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccccc
Confidence 4567778788777766666656643
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.039 Score=68.50 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=12.4
Q ss_pred CCccccchhHHhhchhHHHHHHhh
Q 000440 1349 ECCSFSNGEYVKAGLAELEQWCYD 1372 (1509)
Q Consensus 1349 ~~cs~s~G~qIr~nls~Le~W~~~ 1372 (1509)
+-+||++|--| +=|..=+.|-..
T Consensus 828 ~dLsFskgd~I-~VlekqemwW~G 850 (1118)
T KOG1029|consen 828 NDLSFSKGDTI-TVLEKQEMWWFG 850 (1118)
T ss_pred ccccccCCCee-eeehhccceecc
Confidence 56677777654 234444555443
No 34
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.95 E-value=0.0041 Score=76.34 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=34.6
Q ss_pred HhHHHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYK 852 (1509)
Q Consensus 783 ~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~ 852 (1509)
...-++.||+.||||.+|.+|++++.+.+.|+ ++|.+.. ..++..||+.+|++..++.|.
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccC
Confidence 33455666666666666666666666666666 5553211 123445666666666666664
No 35
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.90 E-value=0.00062 Score=89.99 Aligned_cols=267 Identities=15% Similarity=0.054 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCCCChh-hHHHHhhccchhHHHhhhhcCCCcccChHHHHHHhhcc
Q 000440 605 IGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1509)
Q Consensus 605 v~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~-~v~~QLr~~gvle~i~i~~~gyp~r~~~~~F~~ry~~l 683 (1509)
++..++-++.+....|.+..+||.|||++|+.-.+..++.. .+..++...|...+....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 45555667777888888889999999999999999999988 79999999999999999999999999999998877744
Q ss_pred cCCCCCCCCccHHHHHHHHHhcCCCccccccceeeeeccchhhhhhhHhhhh--------------------------hh
Q 000440 684 APDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL--------------------------GN 737 (1509)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l--------------------------~~ 737 (1509)
.-.....+.-.+.+|..+++.-+.+.+..+.+.++.+.-....+.-.+.+.. ..
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 2111111111244566677777777778888777775533222221111111 12
Q ss_pred hHHHHHHHhhhhHHHHHHHHH----HHHhHhhhhcccchhhhHHHH----------------------------------
Q 000440 738 AARIIQRQIRTYIARKEFIAL----RKAAIVLQSYWRGILACKLYE---------------------------------- 779 (1509)
Q Consensus 738 aa~~IQ~~~R~~l~R~~~~~~----r~a~i~IQ~~~Rg~laR~~~~---------------------------------- 779 (1509)
.+..+|+-++....+..+... -...+.+|..|-|...+....
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 333444444444433332222 124444555555433221110
Q ss_pred ----------------------------HHHHhHH---HHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHH-
Q 000440 780 ----------------------------QLRREAA---ALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFR- 827 (1509)
Q Consensus 780 ----------------------------~~r~~~A---Ai~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~- 827 (1509)
.+.++.. +...|+|++....++.+..+..+.+.+| ++++..|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 0001111 3345666777777777777777777777 66666665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000440 828 FRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRE 873 (1509)
Q Consensus 828 ~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ~~~R~~~ark~ 873 (1509)
......+++-+|..|+.+..+..+...++....+|..++...-+..
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 1223456666777777777777777777777777777665554443
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.80 E-value=0.12 Score=67.42 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000440 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPP 960 (1509)
Q Consensus 881 a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~ 960 (1509)
..++..++..++.|+.++..|....+.++.....+|. .+...+.....+|+|+.+.+....++++...........
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk----rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~ 534 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK----RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQA 534 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh
Confidence 3445666677777777887777777777766666665 455555666667777666665443333322221111100
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 961 IVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1509)
Q Consensus 961 ~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~ 1006 (1509)
...| .-+....+..+|+.|+.+|+.++...++.+..++.+.+++
T Consensus 535 ~r~e--~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 535 TRQE--CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1122455677788888888888877777777777666444
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.78 E-value=0.27 Score=64.10 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 000440 926 LQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVI-VHDTEKIESLTAEVDSLKALLLSERQSAEEA----- 999 (1509)
Q Consensus 926 L~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l-~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~----- 999 (1509)
++....+||.++..++..+...+++...+..+.. ++... .+.+...+.|...+..+++.-..|+..+...
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~----~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKl 618 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ----ELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKL 618 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4445555555555555555544444444443321 00001 1112334444444444444444444444432
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 1000 --RKACMDAEVRNTELVKKLEDTEEKNQVIRQQALA 1033 (1509)
Q Consensus 1000 --e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~ 1033 (1509)
-..+.+.++.++.....+..-+.|+.+|++.+..
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777777787788899999885543
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.56 E-value=2 Score=55.16 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=20.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000440 1297 LIAHWQSIVKSLNSYLKTMKVNYVPPFLV 1325 (1509)
Q Consensus 1297 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~ 1325 (1509)
|..+++..+..+++++..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45567788888888888887777766543
No 39
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.55 E-value=0.055 Score=72.17 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=66.4
Q ss_pred HHHHhhhhHHHHHHHHH-----HHHhHhhhhcccchhhhHHHHHHH-----HhHHHHHhhhhhhhHHH----HhhHHHHH
Q 000440 742 IQRQIRTYIARKEFIAL-----RKAAIVLQSYWRGILACKLYEQLR-----REAAALKIQKNFHSYTA----RTSYLTAR 807 (1509)
Q Consensus 742 IQ~~~R~~l~R~~~~~~-----r~a~i~IQ~~~Rg~laR~~~~~~r-----~~~AAi~IQ~~~R~~~~----Rk~y~~~r 807 (1509)
.|.-+|+...|..--.+ ..-..++|+..||+..|..++... +.-...-||..|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 55555555555432111 122234477777777776654421 23355667777777763 22233445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 808 SSAIQLQTGLRAMVARNEFRFRKQ-----TKAAIIIEAYLRRHTACSYYKSLK 855 (1509)
Q Consensus 808 ~a~i~IQs~~Rg~~aRr~~~~~~~-----~~aA~~IQ~~~R~~~~r~~y~~~~ 855 (1509)
..++.+|++.||.++|+.+....+ ..+.+.||++.|....|..|+.+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 667777788888877777655443 345666777777777777665554
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.44 E-value=7.8 Score=54.96 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 000440 520 TFAQKLYQ 527 (1509)
Q Consensus 520 ~~~~kl~~ 527 (1509)
++++.+.-
T Consensus 38 ~ildAi~~ 45 (1164)
T TIGR02169 38 NIGDAILF 45 (1164)
T ss_pred HHHHHHHH
Confidence 34444443
No 41
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.33 E-value=1 Score=56.38 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=13.1
Q ss_pred hHHHHHHHHhcCCCHHH
Q 000440 351 RFHLNTTAELLKCDAKS 367 (1509)
Q Consensus 351 ~~~l~~~a~LLgv~~~~ 367 (1509)
...|..|-.++|++.++
T Consensus 317 F~rl~~Al~~~Glsd~E 333 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTE 333 (1259)
T ss_pred HHHHHHHHHhcCCChHH
Confidence 34688899999997654
No 42
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.31 E-value=0.0038 Score=42.57 Aligned_cols=19 Identities=53% Similarity=0.705 Sum_probs=12.9
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 000440 737 NAARIIQRQIRTYIARKEF 755 (1509)
Q Consensus 737 ~aa~~IQ~~~R~~l~R~~~ 755 (1509)
+||+.||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777776665
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.30 E-value=4.2 Score=54.12 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 970 HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 970 ~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
+.+.+++.|+.++++++.++.+|+.+......+..+.+........++..+...++....++..|+
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665555544444444444444444444444444444444
No 44
>PRK09039 hypothetical protein; Validated
Probab=96.24 E-value=0.15 Score=61.35 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVK 1015 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~ 1015 (1509)
.++..|+.+++.|+.++.+++..+...+.+..+.+...+++..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333333333333
No 45
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.24 E-value=0.06 Score=71.81 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=95.5
Q ss_pred HHHHHHhhhhHHHHHHHHH-------HHHhHhhhhcccchhhhHHHHHHHHhHH---HHHhhhhhhhHHHHhhHHHHH--
Q 000440 740 RIIQRQIRTYIARKEFIAL-------RKAAIVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTAR-- 807 (1509)
Q Consensus 740 ~~IQ~~~R~~l~R~~~~~~-------r~a~i~IQ~~~Rg~laR~~~~~~r~~~A---Ai~IQ~~~R~~~~Rk~y~~~r-- 807 (1509)
..-+..+++++.|....-+ ....+..|+.+||...|....++-...+ -.++|+..||+..|..+....
T Consensus 481 ~k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~f 560 (1401)
T KOG2128|consen 481 MKWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDF 560 (1401)
T ss_pred hhhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhH
Confidence 4455666666666543222 2344557888888877765444332111 234699999998887765432
Q ss_pred -----hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHH
Q 000440 808 -----SSAIQLQTGLRAMVA--RNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRE 873 (1509)
Q Consensus 808 -----~a~i~IQs~~Rg~~a--Rr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~-------ka~~~iQ~~~R~~~ark~ 873 (1509)
..+..+|+.|||++. -+..-..-..+.++.+|+..|+++.|+.|.+.. .+++.+|+..|....|+.
T Consensus 561 l~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 561 LKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred HHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 357789999999984 222222233577889999999999998875544 578999999999999999
Q ss_pred HHHHHHH
Q 000440 874 LRNLKMA 880 (1509)
Q Consensus 874 l~~lk~~ 880 (1509)
++.+.-.
T Consensus 641 y~~L~~s 647 (1401)
T KOG2128|consen 641 YKLLFTS 647 (1401)
T ss_pred HHHHhcC
Confidence 8877743
No 46
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.18 E-value=0.005 Score=42.01 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=10.0
Q ss_pred HHHHhhhhhhhHHHHhhH
Q 000440 786 AALKIQKNFHSYTARTSY 803 (1509)
Q Consensus 786 AAi~IQ~~~R~~~~Rk~y 803 (1509)
||+.||++||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555555555554
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=6.3 Score=52.69 Aligned_cols=49 Identities=29% Similarity=0.249 Sum_probs=36.9
Q ss_pred HHHhhHHHHHHHHHhhcCCCcCCHHHHHHhh---CCCCCHHHHHHHHhcCccCCC
Q 000440 1382 WDELKHIRQAVGFLVINQKPKKTLNEITKEL---CPVLSIQQLYRISTMYWDDKY 1433 (1509)
Q Consensus 1382 ~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~---C~~Ln~~Ql~kiL~~Y~~d~~ 1433 (1509)
.+.|.|..+-+.|-+.| ++.+|..| ..+ =-+||+.=|+=.|.+|+|..+
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPTPl 1220 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPTPL 1220 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCCCc
Confidence 56788888888888886 45667665 222 247899999999999999655
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=4.4 Score=53.14 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=22.8
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcC
Q 000440 125 FGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1509)
Q Consensus 125 ~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1509)
..+++||--|| +|-.|||||- |+.-++++-|
T Consensus 20 I~~fDp~FNAI-------------------TGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNAI-------------------TGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred ccCCCcccchh-------------------hcCCCCCchH----HHHHHHHHHc
Confidence 46778887664 8999999995 5666666644
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=2.9 Score=54.72 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=7.5
Q ss_pred HHHHHHHHhhc
Q 000440 408 LFDWLVDKINS 418 (1509)
Q Consensus 408 LF~wiv~~iN~ 418 (1509)
-++|.+..||.
T Consensus 316 ~l~~~~~tl~~ 326 (1174)
T KOG0933|consen 316 SLNLKKETLNG 326 (1174)
T ss_pred HHHHHHHHHhh
Confidence 46777777774
No 50
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.81 E-value=0.0073 Score=71.72 Aligned_cols=56 Identities=29% Similarity=0.370 Sum_probs=42.8
Q ss_pred eCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHH
Q 000440 102 INPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 166 (1509)
Q Consensus 102 vNP~~~l~~~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1509)
+|||...| |++.....++ .+.+||-|-|. +.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk--~R~~LPvw~~k-----~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILK--KRRELPVWEQK-----EEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHH--HHhcCchHHhH-----HHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999998 7776555543 34577766543 556777788999999999999999754
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.79 E-value=0.64 Score=58.00 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=4.9
Q ss_pred hhcCCCcccCh
Q 000440 663 SCAGYPTRRTF 673 (1509)
Q Consensus 663 ~~~gyp~r~~~ 673 (1509)
.+.||.+-..|
T Consensus 43 FKVGw~s~rdY 53 (546)
T PF07888_consen 43 FKVGWSSTRDY 53 (546)
T ss_pred eecCCCchhhe
Confidence 44455444333
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.73 E-value=0.92 Score=58.00 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAE--------------EARKACMDAEVRNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~--------------~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
-++.+|+.++.+|++.+..++.-.. ....++.++++..+.+..++..+|..+..|++|+.
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666555543222 22223444444555555666666666777776653
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.64 E-value=9 Score=54.55 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=6.3
Q ss_pred CCCcccChHHHH
Q 000440 666 GYPTRRTFYEFL 677 (1509)
Q Consensus 666 gyp~r~~~~~F~ 677 (1509)
|.|.++...+|+
T Consensus 125 ~~~~~v~~~d~l 136 (1486)
T PRK04863 125 GLPDSVQPTDLL 136 (1486)
T ss_pred cCccccChHHHH
Confidence 455555555555
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.63 E-value=1.6 Score=45.75 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRILKEQE 949 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l~~e~e 949 (1509)
++..|+..+..++.+++.+...+...+.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655544433
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.57 E-value=0.89 Score=59.03 Aligned_cols=49 Identities=27% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQV 937 (1509)
Q Consensus 885 ~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~ql 937 (1509)
..+++.++.|+.++..|+.++.....+.++++. ..++|+.+.++|+.+.
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled----~~K~L~~E~ekl~~e~ 452 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELED----LEKKLQFELEKLLEET 452 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555566777777777777766666666555 3444444444444333
No 56
>PRK11637 AmiB activator; Provisional
Probab=95.51 E-value=0.9 Score=56.70 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000440 892 DKLEKRVEELTWRLQ 906 (1509)
Q Consensus 892 ~kLe~kv~eL~~~le 906 (1509)
..++.++..++.++.
T Consensus 78 ~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 78 KKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 57
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.49 E-value=6.8 Score=55.50 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000440 1023 KNQVIRQQ 1030 (1509)
Q Consensus 1023 e~~~L~qq 1030 (1509)
+...++.+
T Consensus 408 ~~~~l~~~ 415 (1179)
T TIGR02168 408 RLERLEDR 415 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 58
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.47 E-value=0.23 Score=58.90 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=73.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHHhhhc-CCCccccchhHHhhchhHHHHHHhhccc
Q 000440 1297 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEYVKAGLAELEQWCYDATE 1375 (1509)
Q Consensus 1297 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~QlF~fIna~lFN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1375 (1509)
+...+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. .+.-|-.--.++...|..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4467889999999998543 4679999999999999999999999998753 3455555567899999999999998710
Q ss_pred --ccccchHHHhhHHHHHHHHHhhcCCCcCCHHHHHHhhCCCCCHHHHHHHHhcCc
Q 000440 1376 --EYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYW 1429 (1509)
Q Consensus 1376 --~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ln~~Ql~kiL~~Y~ 1429 (1509)
...+...+.|..++|.++||....-..--.-.++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124566789999999999999863232211135555678999999999998874
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.37 E-value=1 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRI 944 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l 944 (1509)
+.+.++.++..++.++.++++++
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.25 E-value=2.4 Score=50.88 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=4.1
Q ss_pred cChHHHHH
Q 000440 671 RTFYEFLH 678 (1509)
Q Consensus 671 ~~~~~F~~ 678 (1509)
++..+|+.
T Consensus 14 isL~~FL~ 21 (325)
T PF08317_consen 14 ISLQDFLN 21 (325)
T ss_pred cCHHHHHH
Confidence 44555554
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.21 E-value=18 Score=48.64 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHHhhhcCCCcc
Q 000440 1308 LNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCS 1352 (1509)
Q Consensus 1308 L~~~~~~l~~~~V~~~l~~Q~f~QlF~fIna~lFN~Ll~r~~~cs 1352 (1509)
|+.++.++...-=.-...-|=|.-+..+-...-|+.+|..|.+|.
T Consensus 914 ~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg 958 (1074)
T KOG0250|consen 914 LDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSG 958 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 344444443333333444556666777777788888888776654
No 62
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.92 E-value=0.82 Score=53.02 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQ 1029 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~q 1029 (1509)
.+.+...+-.++++|...+......-..+..++.+++....+....+.+.+++...+++
T Consensus 246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556666666666666666666555566666666666666666666666666665543
No 63
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.91 E-value=11 Score=44.54 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000440 923 IAKLQDALQAMQLQVEEA 940 (1509)
Q Consensus 923 ~~kL~~~~~eLe~qleel 940 (1509)
-+.|+...+.++.+.-++
T Consensus 174 ~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 174 QKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.86 E-value=29 Score=49.31 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=16.2
Q ss_pred HHhcCccCCCCCCCCCHH-HHHHHHhhhh
Q 000440 1424 ISTMYWDDKYGTHSVSSE-VISSMRVLMT 1451 (1509)
Q Consensus 1424 iL~~Y~~d~~e~~~vs~~-~i~~v~~~~~ 1451 (1509)
....|+..+.. ..||++ ++..|+.++.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44556433333 358887 8888876654
No 65
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.82 E-value=4 Score=45.12 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 000440 1019 DTEEKNQVIRQQAL 1032 (1509)
Q Consensus 1019 ~~eee~~~L~qq~~ 1032 (1509)
.+.++...|+|++.
T Consensus 168 RLkdEardlrqela 181 (333)
T KOG1853|consen 168 RLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455556666554
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.78 E-value=30 Score=49.06 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEK 1023 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee 1023 (1509)
....++..++..++..++.+...+.+++.++...+........++...+..
T Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444444444444444444444433
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.74 E-value=26 Score=49.66 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
.++.++..++..+++.......+..++.+..+++...++...++..++.+..+++++
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 526 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQ 526 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333333333333344433344444333
No 68
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.73 E-value=1.1 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRIL 945 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l~ 945 (1509)
.+..+...++.++.++.++...+.
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554443
No 69
>PRK09039 hypothetical protein; Validated
Probab=94.55 E-value=1.7 Score=52.29 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQV 1026 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~ 1026 (1509)
.+....+...++..|+.+++.++.++..++.++...+....+...++++++.+.+.
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544444444444444333
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.52 E-value=3.6 Score=47.02 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000440 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE---KAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVK 963 (1509)
Q Consensus 887 l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~---k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~ 963 (1509)
+.......+.++..+..++...+....+.+.. ....+..+...++..+..++....++...++++......+..+..
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 33334444455555555555444333333221 122344444455555555555555555555544444433311100
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 964 ETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQA 1031 (1509)
Q Consensus 964 e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~ 1031 (1509)
. ..........++..+..|...+...+.....+++....++..++.+..+|......+..++..+
T Consensus 163 ~---~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 163 S---EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112334455555666666666666666666666666666666666666665555555555444
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.49 E-value=2 Score=44.45 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKA----CMDAEVRNTELVKKLEDTEEKNQVIRQQALAM 1034 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e----~~~~~~~~eel~~el~~~eee~~~L~qq~~~l 1034 (1509)
......+++.++..++.+.+.....+...+.. ...+++.+.+..+.+.++...|.-|-+|+..+
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555555544444322 23344556666677777778888887777654
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.45 E-value=19 Score=45.41 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQA 1031 (1509)
Q Consensus 976 ~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~ 1031 (1509)
+.|..++..++..+.+.+++..-+.+++.++....+.+..+|....-++++|+.++
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qL 341 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQL 341 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33444444444444444444444444555554445555555555444455554443
No 73
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.24 E-value=0.039 Score=39.83 Aligned_cols=20 Identities=50% Similarity=0.662 Sum_probs=13.1
Q ss_pred hhhHHHHHHHhhhhHHHHHH
Q 000440 736 GNAARIIQRQIRTYIARKEF 755 (1509)
Q Consensus 736 ~~aa~~IQ~~~R~~l~R~~~ 755 (1509)
.++|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666665
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.19 E-value=29 Score=49.72 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=5.0
Q ss_pred ccceeeeec
Q 000440 713 GKTKVFLRA 721 (1509)
Q Consensus 713 GkTkVFlr~ 721 (1509)
|...-|+++
T Consensus 182 G~f~~~L~a 190 (1486)
T PRK04863 182 GIIPRRLRS 190 (1486)
T ss_pred CCchhhhhc
Confidence 555555555
No 75
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.07 E-value=0.043 Score=39.57 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhhHHHHhhH
Q 000440 785 AAALKIQKNFHSYTARTSY 803 (1509)
Q Consensus 785 ~AAi~IQ~~~R~~~~Rk~y 803 (1509)
.+|+.||++||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777666
No 76
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.99 E-value=42 Score=47.59 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=6.7
Q ss_pred EeeeccccccCCC
Q 000440 430 IGVLDIYGFESFK 442 (1509)
Q Consensus 430 IgiLDi~GFE~f~ 442 (1509)
|.=|.+.||.+|.
T Consensus 3 lk~i~l~gFKSF~ 15 (1163)
T COG1196 3 LKRIELKGFKSFA 15 (1163)
T ss_pred eeEEEEECcccCC
Confidence 3445555665553
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.94 E-value=7.3 Score=48.99 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 883 ETGALKEAKDKLEKRVEELTWRLQ-----------FEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAA 951 (1509)
Q Consensus 883 ~~~~l~~~~~kLe~kv~eL~~~le-----------~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~ 951 (1509)
.+.-|...+.+|+.++..++.... .+......+-++-..+..+++.++..++.++++++.++.+..+..
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344456666677766666654332 111122222222234555556666666666666666655544444
Q ss_pred HHH
Q 000440 952 RKA 954 (1509)
Q Consensus 952 ~~~ 954 (1509)
...
T Consensus 137 ~~~ 139 (546)
T KOG0977|consen 137 RGA 139 (546)
T ss_pred hhh
Confidence 333
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=6.4 Score=44.98 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 883 ETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILK 946 (1509)
Q Consensus 883 ~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~ 946 (1509)
+..++++....+++++..|..+++.......+.++ ++.+++.++..++.++++++..+.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~----~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK----EIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444443333333332 4455555555555555555554443
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.89 E-value=0.69 Score=52.84 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVI 1027 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L 1027 (1509)
..++..|+.++...+........++.+..+.+..++..++.....+...+..+..|
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 33444455555555444444444444444433333333333333333333333333
No 80
>PRK02224 chromosome segregation protein; Provisional
Probab=93.83 E-value=38 Score=46.57 Aligned_cols=11 Identities=18% Similarity=0.592 Sum_probs=7.1
Q ss_pred eeeeeccchhh
Q 000440 716 KVFLRAGQMAE 726 (1509)
Q Consensus 716 kVFlr~~~~~~ 726 (1509)
-||++.|.+..
T Consensus 132 ~~~i~Qge~~~ 142 (880)
T PRK02224 132 CAYVRQGEVNK 142 (880)
T ss_pred eeEeeccChHH
Confidence 36777776643
No 81
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.82 E-value=0.047 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 82
>PTZ00014 myosin-A; Provisional
Probab=93.82 E-value=0.1 Score=69.11 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=23.6
Q ss_pred HHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHH
Q 000440 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1509)
Q Consensus 786 AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr 824 (1509)
.+..||++||+|++|+.|++.+.+++.||+.+|++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666666655554
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.76 E-value=4.5 Score=41.94 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 926 LQDALQAMQLQVEEANFRILKEQ 948 (1509)
Q Consensus 926 L~~~~~eLe~qleel~~~l~~e~ 948 (1509)
-++.+..|+.+++.+...+....
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 84
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.74 E-value=1.6 Score=52.84 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVI 1027 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L 1027 (1509)
++++..+.-+++++.+-|......-+.++.+..+++....+.+..+.+.|++.+.|
T Consensus 246 qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 246 QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444444455455555555444443
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.59 E-value=9.8 Score=41.22 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQSAE 997 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~~l~ 997 (1509)
.+..|+.++.++..+.+.+..+..
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~ 126 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSK 126 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHH
Confidence 344444444444444443333333
No 86
>PRK02224 chromosome segregation protein; Provisional
Probab=93.57 E-value=28 Score=47.94 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=5.3
Q ss_pred CCCHHHHHHHHh
Q 000440 1437 SVSSEVISSMRV 1448 (1509)
Q Consensus 1437 ~vs~~~i~~v~~ 1448 (1509)
.+++.-...+..
T Consensus 823 ~lD~~~~~~~~~ 834 (880)
T PRK02224 823 FLDSGHVSQLVD 834 (880)
T ss_pred cCCHHHHHHHHH
Confidence 444444444433
No 87
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.56 E-value=11 Score=44.90 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~ 1006 (1509)
+++++.++.+++..+++...+..+...+++++
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333333333333
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.32 E-value=5.9 Score=47.02 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.1
Q ss_pred ccChHHHHH
Q 000440 670 RRTFYEFLH 678 (1509)
Q Consensus 670 r~~~~~F~~ 678 (1509)
+++..+|+.
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 344445543
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.28 E-value=8.5 Score=49.91 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQ 994 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~ 994 (1509)
.+..|..++..++.++..++.
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDT 320 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.26 E-value=18 Score=46.89 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~ 1006 (1509)
+.+++..+.+.+..+.++..+...++.++.++
T Consensus 339 i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 339 LLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.25 E-value=5.8 Score=52.39 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.2
Q ss_pred ccCCeeEEecCCCCCCCCC
Q 000440 622 STEPHYIRCVKPNNALRPA 640 (1509)
Q Consensus 622 ~t~~h~irCIkPN~~~~~~ 640 (1509)
.|..+||.|=+|.....|.
T Consensus 422 ~~~Ve~llcT~~~~~~~~~ 440 (717)
T PF10168_consen 422 PCIVEYLLCTKPLSSSAPN 440 (717)
T ss_pred CcceEEEeccCCCCCCCCC
Confidence 4567999999997765553
No 92
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.23 E-value=26 Score=45.81 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=6.5
Q ss_pred CCCCCHHHHHH
Q 000440 1413 CPVLSIQQLYR 1423 (1509)
Q Consensus 1413 C~~Ln~~Ql~k 1423 (1509)
++.||+.||++
T Consensus 934 FS~ls~h~~K~ 944 (980)
T KOG0980|consen 934 FSSLSLHQLKT 944 (980)
T ss_pred cccccHHHHHH
Confidence 55666666654
No 93
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=43 Score=45.31 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 892 DKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQE 949 (1509)
Q Consensus 892 ~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e 949 (1509)
.+++.++.+|...++.+++.+.+......++.+.+++++..+++++..+..++.+.+.
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444444444444444445555555555555555555544444333
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.21 E-value=5 Score=50.95 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 891 KDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARK 953 (1509)
Q Consensus 891 ~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~ 953 (1509)
...++.++..|+-++...+...+.+++ .+..++..+.+.+.++++++.++.++++++..
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~----ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQD----TIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 333444444444443333333333333 33344444444444555555555444444433
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.17 E-value=14 Score=46.25 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 985 LKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQ 1029 (1509)
Q Consensus 985 Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~q 1029 (1509)
.+.++..+++.+.++..-+.+....+..+..++.++++..+..++
T Consensus 437 ~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 437 AENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333334444444444444443333
No 96
>PRK03918 chromosome segregation protein; Provisional
Probab=92.93 E-value=12 Score=51.26 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHhhhh
Q 000440 1437 SVSSEVISSMRVLMT 1451 (1509)
Q Consensus 1437 ~vs~~~i~~v~~~~~ 1451 (1509)
.+++.....+...+.
T Consensus 824 ~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 824 FLDEERRRKLVDIME 838 (880)
T ss_pred ccCHHHHHHHHHHHH
Confidence 566666555555443
No 97
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.74 E-value=0.08 Score=54.05 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999987764
No 98
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.68 E-value=19 Score=41.86 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=6.8
Q ss_pred chhhHHHHHHH
Q 000440 1158 DVLAYWLSNSS 1168 (1509)
Q Consensus 1158 ~~lafWLSN~~ 1168 (1509)
+.++-|.+-..
T Consensus 338 eGl~qW~~dL~ 348 (401)
T PF06785_consen 338 EGLAQWETDLQ 348 (401)
T ss_pred hhHHHHHHHHH
Confidence 35667876654
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.68 E-value=38 Score=43.59 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000440 893 KLEKRVEELTWRLQFEKQ 910 (1509)
Q Consensus 893 kLe~kv~eL~~~le~e~~ 910 (1509)
.-+..+.+++..|+.++.
T Consensus 288 qkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 288 QKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 100
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.24 E-value=10 Score=42.06 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000440 923 IAKLQDALQAMQ 934 (1509)
Q Consensus 923 ~~kL~~~~~eLe 934 (1509)
++.|.-+.+.++
T Consensus 68 nqrl~~E~e~~K 79 (333)
T KOG1853|consen 68 NQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 101
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.08 E-value=0.11 Score=52.68 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 102
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.00 E-value=0.11 Score=56.44 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred HhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999988888764
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.98 E-value=21 Score=38.75 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSER 993 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~ 993 (1509)
.+.+..+|..+...|+.++-..+
T Consensus 121 lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 121 LKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666666666666653333
No 104
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=8 Score=47.40 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 000440 1010 NTELVKKLEDTEEKNQVIRQQALAMSPT 1037 (1509)
Q Consensus 1010 ~eel~~el~~~eee~~~L~qq~~~l~~~ 1037 (1509)
-..+..+..++|++|--|+.++..|+.+
T Consensus 165 E~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 165 EARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 3344556667777777777777766644
No 105
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.79 E-value=0.15 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.69 E-value=8.8 Score=49.50 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 000440 1003 CMDAEVRNTELVKKLEDTEEKNQVIRQQALAMSPT 1037 (1509)
Q Consensus 1003 ~~~~~~~~eel~~el~~~eee~~~L~qq~~~l~~~ 1037 (1509)
+..++....++..++..-++.+.+|..+...++..
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444455555555556667777777766654
No 107
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.63 E-value=54 Score=42.72 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKA-------CMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e-------~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
++..+...-+++.+||+++..++.....+..+ +....-...++.+++.+++.....++.+
T Consensus 151 dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~ 217 (617)
T PF15070_consen 151 DKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEK 217 (617)
T ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666665544433222 2222223344445555555444444443
No 108
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.59 E-value=36 Score=46.27 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=7.0
Q ss_pred ccchHHHHHHHh
Q 000440 567 DYVVAEHQVLLT 578 (1509)
Q Consensus 567 d~~~~~~~~ll~ 578 (1509)
|+++|+++.-+.
T Consensus 241 DYISPEvLqs~~ 252 (1317)
T KOG0612|consen 241 DYISPEVLQSQG 252 (1317)
T ss_pred CccCHHHHHhhc
Confidence 566666655443
No 109
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.41 E-value=0.25 Score=50.61 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.3
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998875
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.39 E-value=66 Score=46.28 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.4
Q ss_pred eEEEecCCCCCchhHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~ 170 (1509)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367999999999998777654
No 111
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.30 E-value=0.15 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.|+|.|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999887765
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.28 E-value=93 Score=44.78 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000440 889 EAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEA 958 (1509)
Q Consensus 889 ~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~ 958 (1509)
.....+..+...++..+...+-....+++.......++...+.+|+..+..++.++.++...++......
T Consensus 766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~ 835 (1822)
T KOG4674|consen 766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSL 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333444444444433333333333333334455566667777777777777777776666666665554
No 113
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.26 E-value=0.13 Score=59.83 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568888999999999999999999884
No 114
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.08 E-value=0.34 Score=56.23 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999887765
No 115
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.99 E-value=0.35 Score=49.85 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.....|+++|++|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999888766
No 116
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.80 E-value=57 Score=41.48 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 1007 EVRNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 1007 ~~~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
+.+++++...+...|..+++|-+++-
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44677777788888877777766653
No 117
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.60 E-value=0.29 Score=60.26 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 132 i~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+++.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 344455666667666789999999999999999988877643
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.53 E-value=0.19 Score=51.20 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|+|.|++|+|||..++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 119
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.49 E-value=21 Score=51.29 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.4
Q ss_pred HHHHHHhcCCC
Q 000440 354 LNTTAELLKCD 364 (1509)
Q Consensus 354 l~~~a~LLgv~ 364 (1509)
-+.+-.++|++
T Consensus 172 k~~~d~if~~~ 182 (1311)
T TIGR00606 172 KQKFDEIFSAT 182 (1311)
T ss_pred HHHHHHHhhhh
Confidence 34444555554
No 120
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.47 E-value=33 Score=38.21 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRIL 945 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l~ 945 (1509)
++..|..-+..++.++++++..+.
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 121
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.43 E-value=0.29 Score=58.17 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++.+...+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998854
No 122
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.32 E-value=0.31 Score=51.66 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998764
No 123
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.29 E-value=32 Score=41.43 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 000440 1015 KKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 1015 ~el~~~eee~~~L~qq 1030 (1509)
.+++.+...|..|.+|
T Consensus 410 qevkrLrq~nr~l~eq 425 (502)
T KOG0982|consen 410 QEVKRLRQPNRILSEQ 425 (502)
T ss_pred HHHHHhccccchhhhh
Confidence 3333333333333333
No 124
>PRK06696 uridine kinase; Validated
Probab=90.24 E-value=0.37 Score=54.50 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 134 aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+|+..+.. ..++.--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555431 3556778999999999999999999998854
No 125
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.19 E-value=0.24 Score=48.95 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.6
Q ss_pred CCeEEEecCCCCCchhHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999876
No 126
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.18 E-value=0.26 Score=55.14 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988876
No 127
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.17 E-value=0.21 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.13 E-value=10 Score=42.83 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 923 IAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1509)
Q Consensus 923 ~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e 1002 (1509)
+.+|+++...-+-+++.+++.+.+.+........+...+..| ...+-+..+.|++...++..++..-+..+.-++.+
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkRE---nq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ 103 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRE---NQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ 103 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh---hhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 334444444444455555555544333333322222222222 22234556677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 1003 CMDAEVRNTELVKKLEDTEEKNQVIRQQA 1031 (1509)
Q Consensus 1003 ~~~~~~~~eel~~el~~~eee~~~L~qq~ 1031 (1509)
+...++.++.+..+++.++.+.+..++..
T Consensus 104 l~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 104 LNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777776666666555443
No 129
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.11 E-value=53 Score=40.00 Aligned_cols=15 Identities=20% Similarity=-0.053 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000440 1245 LTAFLEKIYGMIRDN 1259 (1509)
Q Consensus 1245 L~~l~~~iy~~l~~~ 1259 (1509)
+-..-++||.+++..
T Consensus 574 ~n~~r~~i~k~V~~v 588 (622)
T COG5185 574 LNRKRYKIHKQVIHV 588 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344455554443
No 130
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.06 E-value=20 Score=46.85 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 000440 1022 EKNQVIRQQALA 1033 (1509)
Q Consensus 1022 ee~~~L~qq~~~ 1033 (1509)
+.-..|+.++..
T Consensus 170 eqk~~LrkEL~~ 181 (717)
T PF09730_consen 170 EQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHH
Confidence 333445554443
No 131
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.01 E-value=0.49 Score=53.75 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.3
Q ss_pred hcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcC
Q 000440 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1509)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1509)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467889999999999999999999999886554
No 132
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.99 E-value=0.22 Score=55.38 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999988865
No 133
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=89.95 E-value=0.26 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3678999999999999999877663
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.87 E-value=56 Score=42.57 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQ 1029 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~q 1029 (1509)
...-.|..++-++...+.+...-.+++...+.+++.....+...++.-.++...|++
T Consensus 174 ~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 174 DAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333344444445555555555555566666666655555555555444444444443
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.81 E-value=68 Score=40.84 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTE 1021 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~e 1021 (1509)
.-...-|..+...+.+.+++.+.+..+.+++....+.+.+.+..+...++
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666665555555444444444443333
No 136
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.76 E-value=0.24 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988876
No 137
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.71 E-value=0.48 Score=53.45 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988753
No 138
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.70 E-value=0.23 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.9
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999988765
No 139
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.62 E-value=0.24 Score=54.73 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
|-|+|.||||||+.|+.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 140
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.62 E-value=0.38 Score=55.87 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444332 346999999999999999999988753
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.53 E-value=24 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRI 944 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l 944 (1509)
++.+|+.++.+++..+++.....
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 142
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.25 E-value=0.5 Score=56.84 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=35.6
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
...|+-..+.++-.|-..+ +....+...+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456554444443333222 2233334445545799999999999999999998885
No 143
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.24 E-value=31 Score=45.59 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000440 813 LQTGLRAMVARNE 825 (1509)
Q Consensus 813 IQs~~Rg~~aRr~ 825 (1509)
|...++|.+.-..
T Consensus 171 l~~Ai~~LlGl~~ 183 (650)
T TIGR03185 171 LKEAIEVLLGLDL 183 (650)
T ss_pred HHHHHHHHhCcHH
Confidence 4444444444333
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.16 E-value=4.4 Score=45.06 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAEEA 999 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~~~ 999 (1509)
+.+|+.++++|++++..++.+++.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444433
No 145
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.10 E-value=0.5 Score=51.80 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=29.9
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 126 GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 126 ~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
+.++|-+.+.-..+ .+. ...|+|+|++|||||++.+.++.++-
T Consensus 8 g~~~~~~~~~l~~~----v~~--g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 8 GTFSPLQAAYLWLA----VEA--RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCHHHHHHHHHH----HhC--CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34455544433332 333 46899999999999999999888763
No 146
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.10 E-value=0.43 Score=56.90 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.|+-....++-.|--. ...+......+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345666555555333311 22344434334 45677779999999999999998876
No 147
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.01 E-value=0.34 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.+..-|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557788999999999999998887653
No 148
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.88 E-value=58 Score=41.92 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRI 944 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l 944 (1509)
+...|.+...+|++.++++..+.
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r 185 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRR 185 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 149
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.83 E-value=32 Score=35.80 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRILKEQ 948 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l~~e~ 948 (1509)
++..|+.++..+-..+..+...+....
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444433
No 150
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.83 E-value=0.29 Score=49.59 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999988877654
No 151
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.79 E-value=0.26 Score=55.32 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCchhHHHHHH
Q 000440 151 SILVSGESGAGKTETTKML 169 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~ 169 (1509)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987753
No 152
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.74 E-value=42 Score=39.79 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFR 943 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~ 943 (1509)
++..|+.++++|...+.|+.-.
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhch
Confidence 4455555555555444444433
No 153
>PRK08233 hypothetical protein; Provisional
Probab=88.68 E-value=0.27 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999888774
No 154
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.65 E-value=0.3 Score=52.41 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.63 E-value=55 Score=43.57 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 884 TGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILK 946 (1509)
Q Consensus 884 ~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~ 946 (1509)
.+...+..+.+.+++..+-..+..........|.+-.+|.+.++.++..|...+++++.++..
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444432222223333334456666666666666666666655544
No 156
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.55 E-value=38 Score=41.12 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQSAEEAR 1000 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~~l~~~e 1000 (1509)
+-++|..++++...+.+++.+.+.+.+
T Consensus 376 Ere~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 376 EREKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 334444444444444444444444433
No 157
>PTZ00301 uridine kinase; Provisional
Probab=88.53 E-value=0.34 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|-|+|-||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999988877663
No 158
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.53 E-value=61 Score=38.57 Aligned_cols=10 Identities=30% Similarity=0.225 Sum_probs=4.2
Q ss_pred cccCCCcccc
Q 000440 1271 CIQAPRTSRA 1280 (1509)
Q Consensus 1271 ~i~~~~~~~~ 1280 (1509)
.|-++....|
T Consensus 471 aiAaedt~~~ 480 (499)
T COG4372 471 AIAAEDTVGP 480 (499)
T ss_pred CCCCCCCcCC
Confidence 4444444433
No 159
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.50 E-value=58 Score=38.25 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAEEARKACM-DAEVRNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~-~~~~~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
+..|..+....+..++.++...-.++..+. +.+.....+.+++..++.+...|+.++.
T Consensus 144 i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 144 IERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333334444333333333322 2234566777888888888888887765
No 160
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.47 E-value=0.34 Score=52.53 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999988864
No 161
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.42 E-value=99 Score=40.86 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhcCCCcCCHHH-HHHhhCCCCCHHHHHHH
Q 000440 1386 KHIRQAVGFLVINQKPKKTLNE-ITKELCPVLSIQQLYRI 1424 (1509)
Q Consensus 1386 ~~i~Qa~~lLq~~kk~~~~~~~-i~~~~C~~Ln~~Ql~ki 1424 (1509)
..++.|+.-.+.. ....++ |++.-=-+=+++||+.-
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaA 886 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAA 886 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHH
Confidence 3456666666654 233333 21111114566676654
No 162
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.39 E-value=0.35 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988866
No 163
>PRK07261 topology modulation protein; Provisional
Probab=88.27 E-value=0.37 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999876654
No 164
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.23 E-value=0.37 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 165
>PRK06547 hypothetical protein; Provisional
Probab=88.23 E-value=0.69 Score=50.10 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.7
Q ss_pred hcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677889999999999999999887754
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.22 E-value=55 Score=43.48 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHh
Q 000440 1413 CPVLSIQQLYRIST 1426 (1509)
Q Consensus 1413 C~~Ln~~Ql~kiL~ 1426 (1509)
++..++-||.+-|.
T Consensus 946 y~~~~~~el~kkL~ 959 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLH 959 (1200)
T ss_pred hccCCHHHHHHHHH
Confidence 55566666655543
No 167
>PRK06762 hypothetical protein; Provisional
Probab=88.05 E-value=0.44 Score=51.08 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 168
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.01 E-value=0.78 Score=56.39 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 133 ~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
+...-.|...+..-++.|.+.|.|.||+|||+..+.+++.
T Consensus 146 l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 146 LDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred ccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 3444555556666678999999999999999998888753
No 169
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.01 E-value=0.37 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999888775
No 170
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.96 E-value=0.35 Score=55.84 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred eEEEecCCCCCchhHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKML 169 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1509)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999987653
No 171
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.81 E-value=0.45 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999877654
No 172
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.80 E-value=0.47 Score=51.34 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.6
Q ss_pred EEEecCCCCCchhHHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1509)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=87.75 E-value=0.43 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999887764
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.69 E-value=22 Score=40.34 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQ 994 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~ 994 (1509)
+..++.|+.++..++.+++....
T Consensus 108 Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 108 KKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 175
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.68 E-value=0.4 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHh
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999888754
No 176
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.67 E-value=21 Score=41.75 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 934 QLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTEL 1013 (1509)
Q Consensus 934 e~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel 1013 (1509)
-+++.+++.++....+++....++. ...+++|..|.+++.+++..+...-.+.+++...+...+.....+
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~----------~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEEN----------RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444443332 123455666666666666555555544445444444444444445
Q ss_pred HHHHHHHHHHHHH
Q 000440 1014 VKKLEDTEEKNQV 1026 (1509)
Q Consensus 1014 ~~el~~~eee~~~ 1026 (1509)
..++.++++.+.+
T Consensus 275 ~aEL~elqdkY~E 287 (306)
T PF04849_consen 275 QAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 177
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.62 E-value=23 Score=36.58 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV----RNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~----~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
.-..+..+..+...++.++..++.........+...+. ....+.+++.+++..+++|..|..
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777666666555544433 333444555556666666666543
No 178
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.59 E-value=0.75 Score=54.42 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
...|+|+|..|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998865
No 179
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.48 E-value=0.49 Score=50.79 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+...|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 180
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.47 E-value=28 Score=46.21 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcC
Q 000440 1014 VKKLEDTEEKNQVIRQQALAMSPT 1037 (1509)
Q Consensus 1014 ~~el~~~eee~~~L~qq~~~l~~~ 1037 (1509)
..+|.+.++.+..|-.|+.+|.+.
T Consensus 739 A~KLAECQeTI~sLGkQLksLa~~ 762 (769)
T PF05911_consen 739 AEKLAECQETIASLGKQLKSLATP 762 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCh
Confidence 456777788888999999888754
No 181
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.42 E-value=7.3 Score=49.65 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=86.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHHhhhcCCCccccchhHHhhchhHHHHHHhhcccc
Q 000440 1297 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEE 1376 (1509)
Q Consensus 1297 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~QlF~fIna~lFN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 1376 (1509)
++.+....+..|...+..|+.. +++.....+..++..-|+..+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3445667899999999999999 99999999999999999999999999876 67777788888777555444443
Q ss_pred cccchHHHhhHHHHHHHHHhhcCCCcCCH--------------HHHHHhh-CCCCCHHHHHHHHh
Q 000440 1377 YAGSAWDELKHIRQAVGFLVINQKPKKTL--------------NEITKEL-CPVLSIQQLYRIST 1426 (1509)
Q Consensus 1377 ~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ln~~Ql~kiL~ 1426 (1509)
+.......+..|.+++.||-++..+.... .++..+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 34445579999999999999986654322 1222222 15788888888875
No 182
>PF05729 NACHT: NACHT domain
Probab=87.31 E-value=0.48 Score=50.14 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887643
No 183
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.30 E-value=97 Score=39.50 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 884 TGALKEAKDKLEKRVEELTWRLQFEKQLR 912 (1509)
Q Consensus 884 ~~~l~~~~~kLe~kv~eL~~~le~e~~~~ 912 (1509)
...+++....++.++..|+..+..-...+
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~t~~el 219 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIEDTQNEL 219 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455556666666666665555444333
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.28 E-value=3 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000440 1009 RNTELVKKLEDTEEKNQVIRQ 1029 (1509)
Q Consensus 1009 ~~eel~~el~~~eee~~~L~q 1029 (1509)
...-+.+++..++.+|.+|-+
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555443
No 185
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.18 E-value=39 Score=38.85 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=4.6
Q ss_pred hhcHHHHHHhh
Q 000440 1095 QENQDLLIKCV 1105 (1509)
Q Consensus 1095 ~~~~~~L~~~i 1105 (1509)
+..+..|..-|
T Consensus 188 q~QL~~L~~EL 198 (246)
T PF00769_consen 188 QEQLKELKSEL 198 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 186
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.18 E-value=0.94 Score=51.69 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 136 a~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555556679999999999999999988887764
No 187
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.15 E-value=0.97 Score=55.13 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=39.5
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++|+-..+.++--|-..+. .++.+... +-+++++++|+.|+|||+.++.+.+.+-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45676666666643333322 34444444 46889999999999999999999998853
No 188
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.12 E-value=0.42 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999988754
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=87.02 E-value=0.8 Score=42.45 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+...+|.|..|+|||.+...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888875
No 190
>PLN03025 replication factor C subunit; Provisional
Probab=86.93 E-value=0.8 Score=54.81 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=40.0
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.++|+-..+.++-.|--.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566655555555444333 2355666666667899999999999999999998874
No 191
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.90 E-value=0.33 Score=57.61 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.8
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
--++-+-||||||||.|+..+|+-|++-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3578889999999999999999999873
No 192
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.87 E-value=0.4 Score=49.88 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 193
>PF12846 AAA_10: AAA-like domain
Probab=86.84 E-value=0.53 Score=55.28 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45689999999999999999998888765
No 194
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.81 E-value=0.53 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
...|+|+|.+|||||+..+.++.++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999888764
No 195
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.75 E-value=25 Score=45.64 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1509)
Q Consensus 887 l~~~~~kLe~kv~eL~~~le~e~~~~~~le~ 917 (1509)
.......++.++..|-..++.+..++...+.
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666655555544444
No 196
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.75 E-value=0.73 Score=49.89 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+...|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999653
No 197
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=86.73 E-value=1.8 Score=53.44 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 133 ~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33344577777777899999999999999999999888754
No 198
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.67 E-value=0.45 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998876653
No 199
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.65 E-value=0.39 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|++.|.||||||+.++.+.+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999988873
No 200
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.65 E-value=42 Score=44.71 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 876 NLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAI 955 (1509)
Q Consensus 876 ~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ 955 (1509)
.|.....++..++.....+.+.-.++..+++..+......+. +...|+..++.|..++++.+..+.+....+..+.
T Consensus 295 eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~----~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 295 ELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ----EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 000440 956 EEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNT---------ELVKKLEDTEEKNQV 1026 (1509)
Q Consensus 956 ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~e---------el~~el~~~eee~~~ 1026 (1509)
++......+ +.++.+..+..+.++..|+..++.++..+.+.+.++........ .....+++...+.+.
T Consensus 371 eE~~~~~~E---i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 371 EEKSRLQGE---IEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhc
Q 000440 1027 IRQQALAM 1034 (1509)
Q Consensus 1027 L~qq~~~l 1034 (1509)
+...+...
T Consensus 448 ~~e~l~e~ 455 (775)
T PF10174_consen 448 LQERLEEQ 455 (775)
T ss_pred HHHHHHHH
No 201
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.63 E-value=79 Score=39.14 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARK 1001 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~ 1001 (1509)
+.++.+++.++..++.++..++.++.+.+.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 231 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQIDELQL 231 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555544444444433
No 202
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.61 E-value=0.42 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.|+|.|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999885543
No 203
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.58 E-value=0.47 Score=57.36 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999988874
No 204
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.54 E-value=72 Score=37.25 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~ 1006 (1509)
..++.+|.++..+++....+...++.++-.+.++.
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666555554443333
No 205
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.53 E-value=1.3e+02 Score=40.29 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 1009 RNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 1009 ~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
..+-...+++++.++|..|+-+...|.
T Consensus 316 erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 316 ERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334566666677777766555444
No 206
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.38 E-value=0.74 Score=56.11 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344667889999999999999999999998854
No 207
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.34 E-value=0.71 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.+.+.+ ..|+|+|+.|||||+..+.++.++.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334444 4699999999999999999888774
No 208
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.27 E-value=1.4e+02 Score=40.44 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHhhcCccccccC-CeEEEeCCCCCCCCCCCHHHHHHhh
Q 000440 84 ARYELNEIYTYTG-NILIAINPFQRLPHLYDTHMMEQYK 121 (1509)
Q Consensus 84 ~R~~~~~iYT~~G-~~LiavNP~~~l~~~y~~~~~~~y~ 121 (1509)
.||..-.+-| -| .|+=++-|--.+|+-|+.++...-+
T Consensus 192 SrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 4666655644 33 3566778888888899988766544
No 209
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.23 E-value=0.52 Score=57.12 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999864
No 210
>PRK09099 type III secretion system ATPase; Provisional
Probab=86.18 E-value=1.2 Score=55.02 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555556789999999999999999988776543
No 211
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.18 E-value=0.5 Score=53.98 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.+..++-+-||||+|||++.|.+++-+--.+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 4567888999999999999999998765433
No 212
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.18 E-value=1.1e+02 Score=38.82 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.4
Q ss_pred HHhhHHHHHhHHHHHHHHHHHHHHHHH
Q 000440 799 ARTSYLTARSSAIQLQTGLRAMVARNE 825 (1509)
Q Consensus 799 ~Rk~y~~~r~a~i~IQs~~Rg~~aRr~ 825 (1509)
-|+.+..++.-+...|++.-++..++.
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 344555566666667777666665554
No 213
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.12 E-value=22 Score=44.09 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKA-CMDAEVRNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e-~~~~~~~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
+..+.+++.++..++.++...+..+...... ..+......+...++..++.....++.++.
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555444443322 122222333344444455555555444443
No 214
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.00 E-value=0.6 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 215
>PRK06315 type III secretion system ATPase; Provisional
Probab=85.87 E-value=1 Score=55.76 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 153 ~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 153 RCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 344444556789999999999999999999988766
No 216
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.76 E-value=1.3e+02 Score=39.38 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQ 1029 (1509)
Q Consensus 978 L~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~q 1029 (1509)
+..++++....+..++-++++.++|..-+.-.+.....++..+++....|+.
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333333333334455555555555544
No 217
>PRK12377 putative replication protein; Provisional
Probab=85.67 E-value=1.3 Score=50.73 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 131 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 131 Hi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 556655554343332 35799999999999999999999999853
No 218
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.61 E-value=44 Score=43.33 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=9.8
Q ss_pred eeccceeeeccchhhhc
Q 000440 549 HYAGEVTYLADLFLDKN 565 (1509)
Q Consensus 549 Hyag~V~Y~~~~flekN 565 (1509)
+|.|++.|+. ||=-|
T Consensus 79 Gy~~digyq~--fLYp~ 93 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPN 93 (594)
T ss_pred CCCCCCcchh--hccCC
Confidence 4778888863 65433
No 219
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.60 E-value=0.63 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999998887754
No 220
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.56 E-value=56 Score=37.61 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRI 944 (1509)
Q Consensus 881 a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l 944 (1509)
..+...++.....|..++.++..+++..+....+.+. ++++++.++.+++..+.+.+..+
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~----eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA----EIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666555554444444443 66666666666666655555544
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.56 E-value=0.7 Score=48.58 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHh
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 222
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.34 E-value=1.3 Score=51.90 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+.+.-|-|+|.||||||++++.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677779999999999999988777754
No 223
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.30 E-value=89 Score=37.17 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK---AQEIAKLQDALQAMQLQVEEANFRILKEQEAA 951 (1509)
Q Consensus 875 ~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k---~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~ 951 (1509)
..+.....+...+......+...+.++..+++.+...+..++.+. ............+++.++..+...+.-.+...
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 952 RKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEA-----RKACMDAEVRNTELVKKLEDTEEKNQV 1026 (1509)
Q Consensus 952 ~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~-----e~e~~~~~~~~eel~~el~~~eee~~~ 1026 (1509)
.+.+.++.........++-....-.+|...+.+++.+.+..-.+...- ..++.++..........+....+++..
T Consensus 141 eeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 141 EEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Q ss_pred HHHHHHhc
Q 000440 1027 IRQQALAM 1034 (1509)
Q Consensus 1027 L~qq~~~l 1034 (1509)
++.++.++
T Consensus 221 ~r~~~~~l 228 (312)
T PF00038_consen 221 LRRQIQSL 228 (312)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhHh
No 224
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.30 E-value=0.49 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998865
No 225
>PRK12704 phosphodiesterase; Provisional
Probab=85.23 E-value=1.2e+02 Score=38.78 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHhh
Q 000440 1385 LKHIRQAVGFLVI 1397 (1509)
Q Consensus 1385 L~~i~Qa~~lLq~ 1397 (1509)
+..|++++..|..
T Consensus 416 ~a~IV~~ADaLsa 428 (520)
T PRK12704 416 EAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHHHHHhC
Confidence 4445555554443
No 226
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.20 E-value=0.62 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999975
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.18 E-value=1.5 Score=49.65 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
..+..++|.|++|+|||..++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456799999999999999999998877543
No 228
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.15 E-value=1.1 Score=53.46 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=36.3
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 118 ~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
+.|+-..+.++..|--+ -+..+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34544444444444332 23455555555545699999999999999999988774
No 229
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=85.05 E-value=1.3 Score=47.42 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=28.9
Q ss_pred hcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcC
Q 000440 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1509)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1509)
...+.-.|-++|-||||||+.+..+-+.|...|-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3456779999999999999999999998887663
No 230
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.05 E-value=0.73 Score=49.78 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.2
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
--|.|+|.||||||+..+.+++.|...+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 3678999999999999999999997543
No 231
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.02 E-value=9.7 Score=41.53 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=6.2
Q ss_pred HHHHHHHHHhcCcC
Q 000440 1024 NQVIRQQALAMSPT 1037 (1509)
Q Consensus 1024 ~~~L~qq~~~l~~~ 1037 (1509)
+..+-.+...+.|+
T Consensus 215 i~dl~~et~~l~p~ 228 (290)
T COG4026 215 ISDLVKETLNLAPK 228 (290)
T ss_pred HHHHHHHHhccCch
Confidence 33444444444544
No 232
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.98 E-value=41 Score=33.05 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 887 LKEAKDKLEKRVEELTWRLQFEKQLRT 913 (1509)
Q Consensus 887 l~~~~~kLe~kv~eL~~~le~e~~~~~ 913 (1509)
+...+..+++++..|+..++.++..+.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~ 33 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQG 33 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444555566666665555544333
No 233
>PRK06217 hypothetical protein; Validated
Probab=84.98 E-value=0.62 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEecCCCCCchhHHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1509)
-|+|.|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999887663
No 234
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.95 E-value=0.7 Score=48.54 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.7
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|.|||.+|||||+-++.+-.++-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 889999999999999999888753
No 235
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.93 E-value=0.69 Score=51.46 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|-|+|-||||||+-++.+..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999888775
No 236
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.93 E-value=50 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 976 ESLTAEVDSLKALLLSERQSAEEA 999 (1509)
Q Consensus 976 ~eL~~e~~~Lk~el~~l~~~l~~~ 999 (1509)
.+++.+.+.+...+......+.+.
T Consensus 336 ~el~~ql~~~~~~a~~~~~~~~~a 359 (1353)
T TIGR02680 336 ERARADAEALQAAAADARQAIREA 359 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 237
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.89 E-value=1.3e+02 Score=38.97 Aligned_cols=39 Identities=36% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK 919 (1509)
Q Consensus 881 a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k 919 (1509)
+.+.+.+..+-.....+..+|...+..++..+..+++..
T Consensus 100 a~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~ 138 (739)
T PF07111_consen 100 AEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGS 138 (739)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHH
Confidence 334444433333333444455544444444444444433
No 238
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.88 E-value=1.1 Score=49.61 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=27.2
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
..+...|.|.|.||||||+.++.+.+.|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999999988654
No 239
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.85 E-value=0.61 Score=54.34 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
....|+|+|+.|||||++.+.++.++..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999998887754
No 240
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.79 E-value=1.7 Score=57.01 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHh-cCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 132 VFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 132 i~aia~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+-.|+. +++..+. .+.+.+++|+|.+|.|||.+++++++-|...
T Consensus 764 IeeLas-fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHG-FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHH-HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444443 3333333 4455667899999999999999999988653
No 241
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=1.4e+02 Score=39.07 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 972 ~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
.....++....+.|+..++..+.++..++....+....++........+++++..|+..+..+.
T Consensus 558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555555556666666666666666666666777788888877766544
No 242
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.75 E-value=1.1 Score=55.66 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=38.6
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 118 ~~y~~~~~~~~--~PHi~aia~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+.|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.++|-..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 45655555544 3555543 44444444 47889999999999999999999988653
No 243
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.74 E-value=0.68 Score=48.66 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+|+|.|.+|||||+.+|.+-.+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998877
No 244
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.73 E-value=99 Score=37.20 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSAEEA 999 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l~~~ 999 (1509)
+...++.|+.+++.++..+...+++..+.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888887777766655543
No 245
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.71 E-value=0.57 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999886654
No 246
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.71 E-value=87 Score=36.54 Aligned_cols=193 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 828 FRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQF 907 (1509)
Q Consensus 828 ~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~ 907 (1509)
+..+++++..+-+.-..+.....-...-+.+..--..--..+..-.-++.......++--.+.+++.|.....|...|++
T Consensus 99 KnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 99 KNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccccccccccccHHHHHHHHHHHHHHH
Q 000440 908 EKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEA-PPIVKETPVIVHDTEKIESLTAEVDSLK 986 (1509)
Q Consensus 908 e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~-~~~~~e~~~l~~~~~~i~eL~~e~~~Lk 986 (1509)
++.+...+---...|.++.-....+....-+++.-+++++..+.+...+++ ...+.-++.-..-++.++++..+.+-|+
T Consensus 179 Ek~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LR 258 (561)
T KOG1103|consen 179 EKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLR 258 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 987 ALLLSERQSAEEARKACMDAEVRNTELVKKLEDT 1020 (1509)
Q Consensus 987 ~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~ 1020 (1509)
.+++.+++.-+.+..++..+++....++.....+
T Consensus 259 Ael~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 259 AELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
No 247
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.54 E-value=3.2 Score=51.66 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 133 ~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+...-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44556677777777899999999999999999988877654
No 248
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=61 Score=42.21 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=21.2
Q ss_pred cceeeeccchhhhccccchHHHHHHHhhCC
Q 000440 552 GEVTYLADLFLDKNKDYVVAEHQVLLTASK 581 (1509)
Q Consensus 552 g~V~Y~~~~flekN~d~~~~~~~~ll~~S~ 581 (1509)
..|.|--..|+-+|-|--.+=+..++..|.
T Consensus 388 cAv~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 388 CAVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 358888899999998865555555665543
No 249
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.41 E-value=1.7e+02 Score=39.70 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHhhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHH
Q 000440 785 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVAR 823 (1509)
Q Consensus 785 ~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aR 823 (1509)
.++.+-|..|..|..-..-......+-..++-++....+
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 455666667777665554444444444444444444333
No 250
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=84.39 E-value=1.2 Score=57.20 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.7
Q ss_pred HhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.....++.|+|.||+|+|||..|+++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999987764
No 251
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.35 E-value=1.4e+02 Score=38.51 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 846 TACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAK 925 (1509)
Q Consensus 846 ~~r~~y~~~~ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~k 925 (1509)
..|..|.....+...-... +..-.......++.+..|......+...+......-...+..+..+..++......
T Consensus 141 ~lr~e~~~~~~~k~~A~~~-----aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~ 215 (522)
T PF05701_consen 141 KLRQELASALDAKNAALKQ-----AEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEE 215 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccccccccccc--------cHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 926 LQDALQAMQLQVEEANFRI---LKEQEAARKAIEEAPPIVKETPVIVH--------DTEKIESLTAEVDSLKALLLSERQ 994 (1509)
Q Consensus 926 L~~~~~eLe~qleel~~~l---~~e~e~~~~~~ee~~~~~~e~~~l~~--------~~~~i~eL~~e~~~Lk~el~~l~~ 994 (1509)
++..+.+.+..++.++..+ ...+..+......+..+..++..... .+.....+...+...+.+|+....
T Consensus 216 ~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~ 295 (522)
T PF05701_consen 216 WEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKK 295 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 995 SAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 995 ~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
.+.....+...+....+-+..+++....++..+++.
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.27 E-value=1.1 Score=55.15 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred HHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
.....+.+.+++|+|.+|+|||.+++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33445677899999999999999999999988543
No 253
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.24 E-value=0.66 Score=52.21 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=20.6
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
--+++-|.||||||++.|+|-+-+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3567889999999999999877553
No 254
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.20 E-value=6.3 Score=43.57 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTEL 1013 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel 1013 (1509)
.+.+..+.++.++.++.++.-....+++.+..++.++.++
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444443
No 255
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.18 E-value=1e+02 Score=37.02 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 980 AEVDSLKALLLSERQSAEEARKA 1002 (1509)
Q Consensus 980 ~e~~~Lk~el~~l~~~l~~~e~e 1002 (1509)
..+..|+.+++.++..+...+++
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 256
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.86 E-value=0.93 Score=47.32 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998765
No 257
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.70 E-value=0.63 Score=58.29 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+-+..=|-||||||||+++..+|.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 56788899999999999999999999764
No 258
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=78 Score=38.60 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.2
Q ss_pred hhcCCCcccChHHHH
Q 000440 663 SCAGYPTRRTFYEFL 677 (1509)
Q Consensus 663 ~~~gyp~r~~~~~F~ 677 (1509)
...|||..+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 345788888876654
No 259
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.65 E-value=1.9e+02 Score=39.75 Aligned_cols=14 Identities=0% Similarity=-0.087 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 000440 1018 EDTEEKNQVIRQQA 1031 (1509)
Q Consensus 1018 ~~~eee~~~L~qq~ 1031 (1509)
+..+++.+++..+.
T Consensus 677 k~~q~~~eq~~~E~ 690 (1317)
T KOG0612|consen 677 KMLQNELEQENAEH 690 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 260
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.64 E-value=1.5 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987753
No 261
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.62 E-value=0.9 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999988854
No 262
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.27 E-value=0.8 Score=48.08 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.4
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999877653
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.22 E-value=1.2e+02 Score=40.99 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCC
Q 000440 696 VACEKILDKMGL 707 (1509)
Q Consensus 696 ~~~~~ll~~~~~ 707 (1509)
...+.+++.+++
T Consensus 85 ~v~~~VV~~L~L 96 (754)
T TIGR01005 85 EILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHcCC
Confidence 344455555554
No 264
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.21 E-value=1.9 Score=53.34 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 111 ~y~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.++..+..|-+...-...+-+=+++..+|.++.+-. ....|++.|++|+|||..++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577777777665544455555566666655433321 24789999999999999999886544
No 265
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=64 Score=42.03 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCHHHHHHHHhh
Q 000440 354 LNTTAELLKCDAKSLEDALIN 374 (1509)
Q Consensus 354 l~~~a~LLgv~~~~L~~~l~~ 374 (1509)
++.+..||.+-+.++..+|..
T Consensus 143 IqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 444555555555555555543
No 266
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.17 E-value=1 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999888877743
No 267
>PRK13764 ATPase; Provisional
Probab=83.15 E-value=0.98 Score=57.95 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=18 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEEANFRI 944 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qleel~~~l 944 (1509)
++..|+..+++++..++.++.++
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 437 ENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
No 269
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.02 E-value=0.98 Score=45.91 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999888876
No 270
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.01 E-value=0.87 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
+---+.+.|.||||||+..|+|+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999999876
No 271
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.91 E-value=1.4 Score=54.67 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 24 ~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 24 GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456777777788899999999999999999987654
No 272
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.90 E-value=82 Score=34.87 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 1009 RNTELVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 1009 ~~eel~~el~~~eee~~~L~qq~~ 1032 (1509)
...++..++..+++++..|.+.+.
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666665553
No 273
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.86 E-value=1e+02 Score=37.34 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 000440 1019 DTEEKNQVIRQQALAMSP 1036 (1509)
Q Consensus 1019 ~~eee~~~L~qq~~~l~~ 1036 (1509)
+++.+.+.|+|....|+.
T Consensus 407 eleqevkrLrq~nr~l~e 424 (502)
T KOG0982|consen 407 ELEQEVKRLRQPNRILSE 424 (502)
T ss_pred HHHHHHHHhccccchhhh
Confidence 444555555554444443
No 274
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.85 E-value=1.5 Score=55.43 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=38.4
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 118 ~~y~~~~~~~~~--PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+.|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 455555555553 4444322222 2345568999999999999999999999988654
No 275
>PRK04182 cytidylate kinase; Provisional
Probab=82.84 E-value=0.86 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|+|+|.+|||||+.++.+-..|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987654
No 276
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=82.78 E-value=1 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988765
No 277
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.77 E-value=35 Score=41.96 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 930 LQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR 1009 (1509)
Q Consensus 930 ~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~ 1009 (1509)
+..+.+++.+++.+.....+++.....++ ....+.+..|.+++..++..+..+..+.+++..-++.....
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el----------~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKEL----------SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555444333333333222 11233344444444444444444444444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000440 1010 NTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 1010 ~eel~~el~~~eee~~~L~qq 1030 (1509)
-+++..+++++++.+.+..+.
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~ 290 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQM 290 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555554443
No 278
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=82.72 E-value=1.2 Score=56.42 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=43.0
Q ss_pred HHHHhhccCcCCCCchHHHHHHH--HHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 116 MMEQYKGAQFGELSPHVFAIADV--AYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 116 ~~~~y~~~~~~~~~PHi~aia~~--Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+++.|+=....++.-|-=.|.+- ....+.... ..+-.|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 56778877788888887666543 344444443 35667789999999999999988876
No 279
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.70 E-value=79 Score=41.70 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 000440 1017 LEDTEEKNQVIRQQALAMSP 1036 (1509)
Q Consensus 1017 l~~~eee~~~L~qq~~~l~~ 1036 (1509)
|+++-+..+.-++|-..|+.
T Consensus 158 leEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 158 LEEALESLKSEREQKNALRK 177 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555553
No 280
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=82.66 E-value=3.6 Score=35.52 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.8
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEecC-CeEEEEeCC-CcEEEEeCCcccCCC
Q 000440 6 NIIVGSHVWVEHPELAWVDGEVFKISA-EEVHVHTTN-GQTVITNISKVFPKD 56 (1509)
Q Consensus 6 ~~~~g~~vw~~~~~~~~~~~~v~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 56 (1509)
++.+|+.|=++..+..|-.|+|+++.+ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899998887677899999999987 778888766 888888887776653
No 281
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.54 E-value=1.1 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988764
No 282
>PRK01156 chromosome segregation protein; Provisional
Probab=82.53 E-value=65 Score=44.42 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~ 170 (1509)
..+|+|++|||||...-.|.
T Consensus 25 i~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 25 INIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67999999999999876655
No 283
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=82.47 E-value=0.98 Score=48.28 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887765
No 284
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.45 E-value=1 Score=49.11 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|+|.|.||||||+-|+.|...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999884
No 285
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.42 E-value=0.41 Score=63.65 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 922 EIAKLQDALQAMQLQVEE---ANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEE 998 (1509)
Q Consensus 922 e~~kL~~~~~eLe~qlee---l~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~ 998 (1509)
+..+++..++..++++++ ++.++..+++.+...++....+++++........++..+..++.+++..+.....+...
T Consensus 309 r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~ 388 (713)
T PF05622_consen 309 RADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 34455555555555555443333333333334444555555555555555554444444
Q ss_pred HHHHHHHHHHHHH
Q 000440 999 ARKACMDAEVRNT 1011 (1509)
Q Consensus 999 ~e~e~~~~~~~~e 1011 (1509)
++.++..++..+.
T Consensus 389 l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 389 LEFENKQLEEKLE 401 (713)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4443333333333
No 286
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=82.41 E-value=1 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 287
>PRK06893 DNA replication initiation factor; Validated
Probab=82.40 E-value=2.3 Score=48.32 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
..+.+.+ ....+-++++.|.||+|||..+..+.+.+..-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333333 34566789999999999999999999887654
No 288
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.31 E-value=1.2 Score=56.22 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334689999999999999998888774
No 289
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.30 E-value=90 Score=34.88 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELV 1014 (1509)
Q Consensus 974 ~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~ 1014 (1509)
.+..|+..+.+.+..+.+++..+....++..++.+..+++.
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444444444444444443
No 290
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.28 E-value=1.4 Score=38.98 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.4
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~ 171 (1509)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998775543
No 291
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.27 E-value=1.6 Score=54.98 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=39.2
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 118 ~~y~~~~~~~~~--PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.+|+-..+.++- +|+-..-..|+ ...+-+|+++++|..|.|||++++.+-+.|-+..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 456655555553 45544333332 2345688999999999999999999998886543
No 292
>PRK04040 adenylate kinase; Provisional
Probab=82.27 E-value=0.99 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998883
No 293
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.16 E-value=0.93 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46678899999999999999998876643
No 294
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.00 E-value=1.1 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 295
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.94 E-value=1.5e+02 Score=37.26 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000440 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAM 1034 (1509)
Q Consensus 978 L~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l 1034 (1509)
|...+.=++++++..++++.+.+.+... ....+..+++.+.+.+..+.+++..|
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~~~~---~~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGKEAQ---ERHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666665543222 23445556666666666666665443
No 296
>PRK08727 hypothetical protein; Validated
Probab=81.91 E-value=2.1 Score=48.80 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.9
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
....+.|+++|.||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999988887654
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.90 E-value=1.8e+02 Score=38.11 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 884 TGALKEAKDKLEKRVEELTWRLQF 907 (1509)
Q Consensus 884 ~~~l~~~~~kLe~kv~eL~~~le~ 907 (1509)
+..|+..+.-|++++.|....++.
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~ 452 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQEL 452 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445666677777766666555543
No 298
>PRK07667 uridine kinase; Provisional
Probab=81.90 E-value=1.8 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.9
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
--|-|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46678999999999999999998865
No 299
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.83 E-value=90 Score=34.57 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 975 IESLTAEVDSLKALLLSERQSAEEARKACMDA----EVRNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~----~~~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
.++|+..+..++..++....++..+++.+.-. ........++..++..++..+..++..|.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555443222 22233334555566667777776665554
No 300
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.82 E-value=1.4 Score=47.58 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 301
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.75 E-value=2.1 Score=54.79 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.+.|+-..+.++--|-..+ ..+..+. ..+-.++++++|+.|.|||+.|+.+-+.|.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4566666665554333332 3444444 346689999999999999999999999987543
No 302
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.67 E-value=1.3 Score=57.31 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=37.9
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 118 EQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 118 ~~y~~~~~~~~~--PHi~aia~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
..|+-..+.++- +|+-. .+..+. ..+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 455555544443 33332 244443 34568999999999999999999999998654
No 303
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=81.64 E-value=1.7 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988755
No 304
>PHA00729 NTP-binding motif containing protein
Probab=81.59 E-value=2.1 Score=48.18 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.6
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
...-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998764
No 305
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.47 E-value=1.8e+02 Score=37.76 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 877 LKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRT 913 (1509)
Q Consensus 877 lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~ 913 (1509)
+.+...+...+.....+....+.+++|+....+...+
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~ 182 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAK 182 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555566666666666666554443333
No 306
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=81.45 E-value=1.4 Score=53.49 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie 188 (1509)
..|+|-+-|+|||||++..+++.|++-.-+|+-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 45899999999999999999999999765554333444554
No 307
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=81.42 E-value=2.1 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
..+.....++.|+|.|++|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 334455678899999999999999999998876443
No 308
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=81.40 E-value=0.88 Score=54.18 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
++.|++=|-||||||||+....+++-+..-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999988877654
No 309
>PRK15453 phosphoribulokinase; Provisional
Probab=81.37 E-value=1.2 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.=-|.|+|-||||||+.++.+.+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999988766544
No 310
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.30 E-value=1.5 Score=44.16 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.9
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 311
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.30 E-value=13 Score=42.07 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 988 LLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 988 el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
++..++.-+...+.+..........+..++..+.+++.+++.+
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444444444
No 312
>PRK14527 adenylate kinase; Provisional
Probab=81.13 E-value=1.4 Score=48.58 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999887664
No 313
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=81.12 E-value=2.4 Score=47.87 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCC--CeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 136 ADVAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 136 a~~Ay~~m~~~~~--~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
|-.|-..+..... -..++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444455544432 3579999999999999988888877654
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.00 E-value=12 Score=45.20 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALA 1033 (1509)
Q Consensus 978 L~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~ 1033 (1509)
+..+++.+-++......++.+.+.+..+......++..+|.+..++.++++++...
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555556666666666666666666666554
No 315
>PRK06761 hypothetical protein; Provisional
Probab=81.00 E-value=1.1 Score=52.36 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 316
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.87 E-value=12 Score=41.53 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALA 1033 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~ 1033 (1509)
++...+..+.++|++++++...+++.++.+...+++..+++..+...+-+++..|++|+..
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555555555555555555556666666666666777777777753
No 317
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=80.85 E-value=2.9 Score=43.72 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668999999999999999999998864
No 318
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.82 E-value=1.3e+02 Score=35.79 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 000440 1023 KNQVIRQQAL 1032 (1509)
Q Consensus 1023 e~~~L~qq~~ 1032 (1509)
||.-|++++.
T Consensus 197 ENRyL~erl~ 206 (319)
T PF09789_consen 197 ENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 319
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.74 E-value=1.1 Score=52.53 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred CeEEEecCCCCCchhHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKML 169 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~ 169 (1509)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 467999999999999999987
No 320
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.58 E-value=2.3e+02 Score=38.40 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHH-HHHhcCCCHHHHHH
Q 000440 1299 AHWQSIVKSLNSYLK-TMKVNYVPPFLVRK 1327 (1509)
Q Consensus 1299 ~~~~~il~~L~~~~~-~l~~~~V~~~l~~Q 1327 (1509)
.+++.+-+-+..=.+ .++..+|++.+++|
T Consensus 835 ~t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 835 TTMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 344444444444333 56667778776554
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=80.50 E-value=2.8 Score=50.29 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987654
No 322
>PRK08356 hypothetical protein; Provisional
Probab=80.44 E-value=1.1 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEecCCCCCchhHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 323
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.21 E-value=2.4e+02 Score=38.50 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000440 1016 KLEDTEEK 1023 (1509)
Q Consensus 1016 el~~~eee 1023 (1509)
+|..++.+
T Consensus 1732 eL~~Le~r 1739 (1758)
T KOG0994|consen 1732 ELAGLEKR 1739 (1758)
T ss_pred HhhhHHHH
Confidence 33333333
No 324
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=1.7e+02 Score=36.67 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccc
Q 000440 891 KDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVH 970 (1509)
Q Consensus 891 ~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~ 970 (1509)
.+.|++++..|......+..-....|.+-.+|...+-.+...|..-++.++.+..+.+..+....+.+++ ...+.
T Consensus 632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K-----~~Y~l 706 (741)
T KOG4460|consen 632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK-----PTYIL 706 (741)
T ss_pred HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----Ccccc
Confidence 3334444444433333222222333333455666677777777777777777776655555555554421 12222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 971 DTEKIESLTAEVDSLKALLLSERQSA 996 (1509)
Q Consensus 971 ~~~~i~eL~~e~~~Lk~el~~l~~~l 996 (1509)
-..+...+++-+.+|-.++.+.-+++
T Consensus 707 ~~~Q~~~iqsiL~~L~~~i~~~~k~V 732 (741)
T KOG4460|consen 707 SAYQRKCIQSILKELGEHIREMVKQV 732 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443333
No 325
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.18 E-value=2.4 Score=54.04 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=39.1
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELS--PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 117 ~~~y~~~~~~~~~--PHi~aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++|+-..+.++- +|+... ...+... +-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566666666554 455443 3333443 55788999999999999999999999865
No 326
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.10 E-value=1.4e+02 Score=38.20 Aligned_cols=15 Identities=13% Similarity=-0.110 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHhhc
Q 000440 1384 ELKHIRQAVGFLVIN 1398 (1509)
Q Consensus 1384 ~L~~i~Qa~~lLq~~ 1398 (1509)
.+..|+++++.|...
T Consensus 409 ~~a~IV~~AD~lsa~ 423 (514)
T TIGR03319 409 IEAVLVAAADALSAA 423 (514)
T ss_pred HHHHHHHHHHHhcCC
Confidence 455556666655543
No 327
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.05 E-value=1.5 Score=50.92 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
+..-.|++.|++|+|||..++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886654
No 328
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=80.03 E-value=1.5 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
+++++++.|.||+|||.....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999987766543
No 329
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=80.02 E-value=1.6 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 330
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.99 E-value=23 Score=42.31 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 000440 1013 LVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 1013 l~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
..++...++...+...+++..|+
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555444
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=79.97 E-value=0.96 Score=58.16 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.+.+.|.|.|+||||||+..|.+++++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999988753
No 332
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=79.95 E-value=1.6 Score=48.45 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=28.7
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhc-h----HHHhhcC
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESN-P----VLEAFGN 203 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~sn-p----ilEaFGN 203 (1509)
|.|+|.+|||||+.++++-++ |... -+...+...+++.+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~~-i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAFG-ISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCEE-EecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999998866543 2110 11123444555543 3 6666665
No 333
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.94 E-value=1.9e+02 Score=37.09 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAE 997 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~ 997 (1509)
+....+++..|-.+++.++..+.
T Consensus 287 L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 287 LNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 334
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.91 E-value=2.6 Score=52.12 Aligned_cols=55 Identities=15% Similarity=0.349 Sum_probs=39.0
Q ss_pred HhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 119 QYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 119 ~y~~~~~~~~~PHi~aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.|+-..+.++--|-.++ ..++.+... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 9 k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 9 KYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45544455554444333 346666665 45789999999999999999999998865
No 335
>PRK08116 hypothetical protein; Validated
Probab=79.89 E-value=3.2 Score=48.37 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHh-cCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 131 HVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 131 Hi~aia~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+.|+.|..--..... ...+..+++.|.+|+|||..+..|.++|...
T Consensus 95 ~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 95 KAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 355555544433322 2345679999999999999999999999764
No 336
>PRK06936 type III secretion system ATPase; Provisional
Probab=79.80 E-value=1.7 Score=53.66 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 133 ~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 33344455555556789999999999999999988877654
No 337
>PRK01156 chromosome segregation protein; Provisional
Probab=79.77 E-value=2.6e+02 Score=38.63 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHH
Q 000440 1302 QSIVKSLNSYLKTMKVNYVPPFL 1324 (1509)
Q Consensus 1302 ~~il~~L~~~~~~l~~~~V~~~l 1324 (1509)
...+..|+.+...+...+++..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 44556666677777766665533
No 338
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=79.67 E-value=1e+02 Score=33.75 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1509)
Q Consensus 875 ~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~ 954 (1509)
+++.....+....+.....+..++.+..+...+..+...-++. ...++...++.++.++.+.+..-..-.......
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~en----r~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV 86 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIEN----RAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEV 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCcccccccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 955 IEEAPPIVKETPV----IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 955 ~ee~~~~~~e~~~----l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
...+.-...++.. .+....++.+|..+..-+...+..+...-..........+..+..+..+|++.+..-+.....
T Consensus 87 arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERs 166 (205)
T KOG1003|consen 87 ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERR 166 (205)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q ss_pred HHhcC
Q 000440 1031 ALAMS 1035 (1509)
Q Consensus 1031 ~~~l~ 1035 (1509)
+..|.
T Consensus 167 VakLe 171 (205)
T KOG1003|consen 167 VAKLE 171 (205)
T ss_pred HHHHc
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=79.60 E-value=3.4 Score=48.29 Aligned_cols=46 Identities=33% Similarity=0.411 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHh---------cCCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 132 VFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 132 i~aia~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45556666665432 23468999999999999999998888887654
No 340
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.56 E-value=3.3e+02 Score=39.69 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 973 EKIESLTAEVDSLKALLLSERQSAE 997 (1509)
Q Consensus 973 ~~i~eL~~e~~~Lk~el~~l~~~l~ 997 (1509)
.++.+|..++.+++..++.....+.
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 341
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.54 E-value=1.6e+02 Score=39.44 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 926 LQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMD 1005 (1509)
Q Consensus 926 L~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~ 1005 (1509)
..+...+|+.++.++..++.+...++..+...+ ......+.+|.......+.++..+..+++..+++...
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l----------~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~ 152 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKAL----------QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSS 152 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666554444433332221 1123345555555555555555555555555554444
Q ss_pred HHH
Q 000440 1006 AEV 1008 (1509)
Q Consensus 1006 ~~~ 1008 (1509)
++-
T Consensus 153 Lky 155 (769)
T PF05911_consen 153 LKY 155 (769)
T ss_pred HHH
Confidence 433
No 342
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=79.50 E-value=1.4 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.46 E-value=2 Score=46.98 Aligned_cols=103 Identities=20% Similarity=0.152 Sum_probs=53.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhcCCCCCCCccHHHHHH--hhchHHHh----hcCccccCCCCCCCcccEEEEEec
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL--ESNPVLEA----FGNAKTVRNNNSSRFGKFVELQFD 224 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il--~snpilEa----FGNAkT~~N~NSSRfgk~~~l~f~ 224 (1509)
-||++|-.|||||+-+|.+.+-|-.-.-....-+..--.-++ +|.||++. |-+-++.|--.|-== -|+- -.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~V-IvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLV-IVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEE-EEe
Confidence 389999999999999999999887543211000000000011 22222211 011111110000000 1222 345
Q ss_pred CCCcccceeeeeecccCccccccCCCCccceeeecccc
Q 000440 225 KNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA 262 (1509)
Q Consensus 225 ~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~ 262 (1509)
..+.+.|..-+-|++-|+|=+ +|-|-|..+.
T Consensus 81 dtNYyksmRrqL~ceak~~~t-------t~ciIyl~~p 111 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKT-------TWCIIYLRTP 111 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCC-------ceEEEEEccC
Confidence 667788888888888777765 4777776653
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=79.43 E-value=1.8 Score=50.90 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 132 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 132 i~aia~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
++....++...++.. .+...|++.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555555555531 245689999999999999999999999865
No 345
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=79.42 E-value=2.4 Score=50.52 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=34.2
Q ss_pred CCCCchHHHHHHHHHHHH----HhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 126 GELSPHVFAIADVAYRAM----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 126 ~~~~PHi~aia~~Ay~~m----~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+++|.--+.+......| ..-.....|++.|-+|||||+.++.+-..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456774444444444433 344678899999999999999999987654
No 346
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=79.40 E-value=1.4 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 457899999999999999999887654
No 347
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.39 E-value=1.5 Score=50.60 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=50.3
Q ss_pred hcCccccccCCeEEEeCCCCCCCCCCCHHHHHHh--hccCc--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCch
Q 000440 87 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQY--KGAQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGK 162 (1509)
Q Consensus 87 ~~~~iYT~~G~~LiavNP~~~l~~~y~~~~~~~y--~~~~~--~~~~PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGK 162 (1509)
.-|.-|++.|..=+-||-|+... -|+-- ++.- +-..+ -.+||-+..+++ ..+--|+|+|..||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~v-lR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALV-LRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEE-EeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 34567888888888888887653 12100 0000 00011 145666655443 3566899999999999
Q ss_pred hHHHHHHHHHHHH
Q 000440 163 TETTKMLMRYLAY 175 (1509)
Q Consensus 163 Te~~k~~~~yla~ 175 (1509)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999854
No 348
>PRK14528 adenylate kinase; Provisional
Probab=79.39 E-value=1.6 Score=47.92 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987766
No 349
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=79.39 E-value=3 Score=51.77 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 133 ~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 133 VRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred ceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 4456666667889999999999999999988877644
No 350
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.33 E-value=1.4 Score=50.05 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
=.|+|-|-||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999998865
No 351
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.31 E-value=1.4 Score=49.59 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998876543
No 352
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=79.29 E-value=2 Score=55.44 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 130 PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|-|.++-.++|.. +.++.-.|+++|-||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3444544444432 4456679999999999999999999988865
No 353
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=79.28 E-value=1.2 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888766
No 354
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.28 E-value=2.1e+02 Score=37.19 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=15.1
Q ss_pred HhhCCCCCHHHHH-------HHHhcCccCCCC
Q 000440 1410 KELCPVLSIQQLY-------RISTMYWDDKYG 1434 (1509)
Q Consensus 1410 ~~~C~~Ln~~Ql~-------kiL~~Y~~d~~e 1434 (1509)
.+.|..|---+|. +|-+.|.+.+++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 4667777777764 444566654443
No 355
>PRK10646 ADP-binding protein; Provisional
Probab=79.23 E-value=3.5 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999888877
No 356
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.17 E-value=2.4 Score=46.28 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+..-.|+++|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 357
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=79.16 E-value=1.4 Score=50.91 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=19.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
-.-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999998666543
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.05 E-value=2.5 Score=55.92 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+...++..++++.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777888899999999999999999998765
No 359
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=79.03 E-value=2.6 Score=50.98 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 136 ADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 136 a~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|...+..+...+ -+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 345555555544 5899999999999999999999998865
No 360
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.00 E-value=1.1 Score=56.20 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+-.+.=|.||||||||+.+|.|+..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567778999999999999999887643
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.98 E-value=2 Score=51.27 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999998654
No 362
>PRK04195 replication factor C large subunit; Provisional
Probab=78.95 E-value=2 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
....++|+|++|+|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999987765
No 363
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.93 E-value=1.5 Score=49.00 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999877543
No 364
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.92 E-value=3.7 Score=49.26 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988754
No 365
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=78.91 E-value=1.5 Score=49.11 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988876643
No 366
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.91 E-value=3.7 Score=50.71 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445788999999999999999988766543
No 367
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.90 E-value=2 Score=40.66 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHh
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999874
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=78.86 E-value=1.5 Score=45.21 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999888765544
No 369
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.83 E-value=1.7 Score=47.37 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
..-|||+|.||||||+.++.+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999999888654
No 370
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=78.81 E-value=1.6 Score=49.37 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999988766
No 371
>PRK00698 tmk thymidylate kinase; Validated
Probab=78.81 E-value=2 Score=47.46 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888543
No 372
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=78.78 E-value=1.6 Score=49.06 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999887654
No 373
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.77 E-value=1.6 Score=47.91 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
.+.+.+.|.|+||||||+..|.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998887664
No 374
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.74 E-value=1.5 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1509)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999888764
No 375
>PRK06921 hypothetical protein; Provisional
Probab=78.71 E-value=2.1 Score=49.72 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
....+++.|.+|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4689999999999999999988887764
No 376
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=78.69 E-value=1.5 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.3
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
.--.|.|+|.||+|||+..|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3458999999999999988876543
No 377
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=78.69 E-value=1.4 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 357899999999999999999887654
No 378
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=78.67 E-value=1.5 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887654
No 379
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.63 E-value=1.2 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+-|-||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 466889999999999999999988755
No 380
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.60 E-value=75 Score=35.91 Aligned_cols=27 Identities=15% Similarity=0.490 Sum_probs=18.3
Q ss_pred chhHHHhhh----hcCCCcccChHHHHHHhh
Q 000440 655 GVLEAIRIS----CAGYPTRRTFYEFLHRFG 681 (1509)
Q Consensus 655 gvle~i~i~----~~gyp~r~~~~~F~~ry~ 681 (1509)
|..+.+++. +-.||+|-.+++|+..-+
T Consensus 108 gfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 108 GFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred ccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 444444443 346999999999987554
No 381
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.54 E-value=1.8 Score=47.14 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
+++|+|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888777776543
No 382
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.53 E-value=2.1 Score=51.68 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 134 aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577888888888889999999999999999999998887764
No 383
>PRK13768 GTPase; Provisional
Probab=78.50 E-value=1.9 Score=49.77 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
.|+|+|.+|+|||+.+..+..+++..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998654
No 384
>PF13479 AAA_24: AAA domain
Probab=78.48 E-value=1.4 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCeEEEecCCCCCchhHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKML 169 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~ 169 (1509)
++..|+|.|+||+|||..++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999877654
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.46 E-value=1.2 Score=58.70 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
...|.|-|.|+||||||+.+|+++.++.--
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 457899999999999999999998876543
No 386
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.45 E-value=3 Score=52.51 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=37.3
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 118 ~~y~~~~~~~~--~PHi~aia~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
+.|+-..+.++ .+|+ ....+.+...+ -.+++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35655555544 3555 33445555444 4578999999999999999999887643
No 387
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.39 E-value=1.7 Score=51.07 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHhcC
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1509)
.|++.|++|+|||..|+.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987654
No 388
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=78.38 E-value=1.6 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 389
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=78.34 E-value=3.9 Score=50.89 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 134 aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...-.+...+..-.+.|.+.|.|.||+|||+..+.++++
T Consensus 148 ~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 148 STGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred cceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334455556666678999999999999999998877765
No 390
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=78.28 E-value=1.7 Score=48.53 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999998877644
No 391
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.19 E-value=3 Score=48.43 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 130 PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
|++=.+-+.+.+.+.. +..|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 5555666666655543 5689999999999999999876533
No 392
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.18 E-value=1.2e+02 Score=34.03 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 000440 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPI 961 (1509)
Q Consensus 882 ~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~ 961 (1509)
..+.....-..-++..+.++...+...+........ ....++..+.+++....++..+...-...-.+.+...
T Consensus 16 ~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a----~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--- 88 (221)
T PF04012_consen 16 ELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMA----NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--- 88 (221)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 962 VKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQ 1030 (1509)
Q Consensus 962 ~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq 1030 (1509)
...+..+++.+...++.+++.....+..++..+..++..+.++..+...+.......+.+
T Consensus 89 ---------al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 89 ---------ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 393
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=78.11 E-value=4.3 Score=50.26 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 132 i~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
++...-+|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 344455566666667889999999999999999988877643
No 394
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=78.10 E-value=84 Score=38.62 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 817 LRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYY 851 (1509)
Q Consensus 817 ~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y 851 (1509)
+--+.+=.++.+..++.||-++|..|.-|...+-+
T Consensus 349 VhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~ 383 (489)
T KOG3684|consen 349 VHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLV 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444555566677888888888877766654
No 395
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.02 E-value=2.2 Score=45.55 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHHhc
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1509)
..|.|.|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 396
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.00 E-value=1.4e+02 Score=34.47 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 000440 1007 EVRNTELVKKLEDTEEKNQVIRQQALAMSPT 1037 (1509)
Q Consensus 1007 ~~~~eel~~el~~~eee~~~L~qq~~~l~~~ 1037 (1509)
.+....-.+.+.++++++..|+.++..|..+
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444555556666666665555443
No 397
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.00 E-value=1.7 Score=48.55 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999988876544
No 398
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.99 E-value=74 Score=43.15 Aligned_cols=7 Identities=57% Similarity=0.833 Sum_probs=3.7
Q ss_pred ccceeee
Q 000440 713 GKTKVFL 719 (1509)
Q Consensus 713 GkTkVFl 719 (1509)
|+||.-+
T Consensus 357 GkTKT~i 363 (1041)
T KOG0243|consen 357 GKTKTCI 363 (1041)
T ss_pred CCceeEE
Confidence 4555544
No 399
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=77.93 E-value=1.1 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=20.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
..+..|+|.||+|+||+..|+++-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678899999999999998775544
No 400
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.91 E-value=3.1 Score=45.61 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 140 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 140 y~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++.+... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 45799999999999999999999988864
No 401
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.85 E-value=52 Score=40.05 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=2.3
Q ss_pred Eeeecc
Q 000440 430 IGVLDI 435 (1509)
Q Consensus 430 IgiLDi 435 (1509)
+-||-+
T Consensus 77 LcilaV 82 (493)
T KOG0804|consen 77 LCILAV 82 (493)
T ss_pred EEEEec
Confidence 333333
No 402
>PRK14531 adenylate kinase; Provisional
Probab=77.81 E-value=1.9 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.2
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
|-|+|.|-+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 403
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=77.61 E-value=1.8 Score=48.63 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998877654
No 404
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=77.59 E-value=2.7 Score=49.38 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 405
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=77.58 E-value=1.8 Score=48.15 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..+.+.|.|++|||||+..+.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999988877543
No 406
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.56 E-value=1.3e+02 Score=33.94 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000440 1013 LVKKLEDTEEKNQVIRQQAL 1032 (1509)
Q Consensus 1013 l~~el~~~eee~~~L~qq~~ 1032 (1509)
+..+|++.+++++.|++...
T Consensus 283 LQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 283 LQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655443
No 407
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.51 E-value=64 Score=39.35 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=5.1
Q ss_pred HHhhhhcCCCcc
Q 000440 659 AIRISCAGYPTR 670 (1509)
Q Consensus 659 ~i~i~~~gyp~r 670 (1509)
-|||-|.|-|+|
T Consensus 104 ~irivRd~~pnr 115 (493)
T KOG0804|consen 104 DIRIVRDGMPNR 115 (493)
T ss_pred eeEEeecCCCce
Confidence 334444444443
No 408
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.45 E-value=2.8 Score=53.97 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=40.0
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 117 ~~~y~~~~~~~~--~PHi~aia~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++|+-..+.++ .+|+-++ ++.+...+ -.+++|++|+.|.|||++++.+.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766665554 4666443 34444444 4899999999999999999999999864
No 409
>PLN02796 D-glycerate 3-kinase
Probab=77.45 E-value=1.7 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1509)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 378899999999999998777663
No 410
>PRK03839 putative kinase; Provisional
Probab=77.43 E-value=1.8 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 411
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.42 E-value=3.4 Score=45.04 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
...+.+++.|.+|.|||..+..+.+.+..-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999888763
No 412
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.40 E-value=1.9 Score=46.85 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988876543
No 413
>PRK06620 hypothetical protein; Validated
Probab=77.28 E-value=3.2 Score=46.70 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=17.9
Q ss_pred eEEEecCCCCCchhHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKML 169 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1509)
.+++|.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888864
No 414
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.25 E-value=1.8 Score=49.35 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 415
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.21 E-value=3.2 Score=53.15 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=38.1
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 118 EQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 118 ~~y~~~~~~~~~--PHi~aia~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++|+-..+.++- +|+-.. +..+.. .+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 8 ~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456555555543 555443 334443 456788999999999999999999998854
No 416
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.21 E-value=86 Score=37.84 Aligned_cols=16 Identities=31% Similarity=0.462 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000440 894 LEKRVEELTWRLQFEK 909 (1509)
Q Consensus 894 Le~kv~eL~~~le~e~ 909 (1509)
+|+.+.+++++|+.++
T Consensus 257 aEqsl~dlQk~Lekar 272 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAR 272 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666655443
No 417
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.19 E-value=1.6 Score=56.98 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
.+.|.+.|.|+||||||+..|+++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999988764
No 418
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.08 E-value=1.8 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998877655
No 419
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.03 E-value=1.9 Score=48.88 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998874
No 420
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.01 E-value=62 Score=40.27 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1509)
Q Consensus 882 ~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~ 917 (1509)
++++..++.+..|.++|..++..+.+.+....++.+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666655555555555544
No 421
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=76.89 E-value=2.1 Score=52.89 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.2
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEecCCeEEEEe
Q 000440 6 NIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHT 39 (1509)
Q Consensus 6 ~~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~~~~ 39 (1509)
....|+.|+|...+ +.+.|+|+..+++.+.+..
T Consensus 46 ~~~iGe~~~i~~~~-~~~~~eVv~~~~~~~~l~~ 78 (450)
T PRK06002 46 FVRLGDFVAIRADG-GTHLGEVVRVDPDGVTVKP 78 (450)
T ss_pred CCCCCCEEEEECCC-CcEEEEEEEEeCCeEEEEE
Confidence 56789999995333 3488999999988877664
No 422
>PRK05642 DNA replication initiation factor; Validated
Probab=76.86 E-value=4.5 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.5
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
-.++|.|++|+|||..+..+.+++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999988887764
No 423
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.80 E-value=3.6 Score=52.37 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=40.5
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 117 ~~~y~~~~~~~~~--PHi~aia~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++|+-+.+.++- +|+-. +.+.+. ..+-+++++++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567666666653 45533 444444 4467889999999999999999999999865
No 424
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=76.77 E-value=1.8 Score=48.41 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 357889999999999999998876543
No 425
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=76.76 E-value=5.4 Score=33.04 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.9
Q ss_pred CcEEEEeCCC-CCeEeEEEEEec-CCeEEEEeCC-CcEEEEeCCcc
Q 000440 10 GSHVWVEHPE-LAWVDGEVFKIS-AEEVHVHTTN-GQTVITNISKV 52 (1509)
Q Consensus 10 g~~vw~~~~~-~~~~~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~~ 52 (1509)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6778887654 899999999988 6678888755 88776665543
No 426
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=76.74 E-value=1.9 Score=48.14 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888776543
No 427
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=76.69 E-value=1.8 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.6
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+.||+.|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999988766
No 428
>PRK10436 hypothetical protein; Provisional
Probab=76.67 E-value=1.8 Score=54.29 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
..=-|+|+|.+|||||++...+++++.
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 345799999999999999988888874
No 429
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=76.59 E-value=14 Score=46.80 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
..-.|++.|++|+|||..+|.+.+.|.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 345799999999999999999988774
No 430
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.58 E-value=2 Score=48.84 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876544
No 431
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.55 E-value=1.2e+02 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000440 926 LQDALQAMQLQVEEANF 942 (1509)
Q Consensus 926 L~~~~~eLe~qleel~~ 942 (1509)
|+-+...+..++++-+.
T Consensus 47 Lkien~~l~~kIeERn~ 63 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNK 63 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 432
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.51 E-value=4.3 Score=49.56 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=42.7
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 117 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 117 ~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.++|+-..+.++--|-.++ +.++..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567777777776665543 455555544 45789999999999999999999888865
No 433
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.48 E-value=3.8 Score=51.39 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=39.7
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 118 EQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 118 ~~y~~~~~~~~~PHi~aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
++|+-..+.++--|-..+. ..+.+... +-.+++|++|++|.|||+.++.+.++|...
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4565555555544444433 34444444 447999999999999999999999998653
No 434
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=76.43 E-value=5 Score=49.20 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=39.3
Q ss_pred CHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhc---------CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~---------~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
++..+..|-+...-..+.-+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444445544444444555556666665543222 125899999999999999999876654
No 435
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=76.41 E-value=1.8 Score=47.27 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-|||+|.||||||+.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999988774
No 436
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.40 E-value=3.6 Score=53.49 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=38.5
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 118 ~~y~~~~~~~~~--PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
++|+-..+.++- .|+...-..++ ...+-.+++|++|++|.|||+.++.+.++|-..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456655555554 44443323332 234567899999999999999999999998643
No 437
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.37 E-value=2.9 Score=53.11 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=36.3
Q ss_pred HhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 119 QYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 119 ~y~~~~~~~~~--PHi~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
.|+-..+.++- .|+.+.-..+. ...+-.++++++|++|+|||+.++.+.+.+-..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 45444444442 44433333332 234457889999999999999999999988653
No 438
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.30 E-value=2.1 Score=47.60 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
.++|.|.||||||...+.++.-++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 68999999999999999888887763
No 439
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.21 E-value=1.8e+02 Score=36.78 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000440 975 IESLTAEVDSLKALLLSERQSAE 997 (1509)
Q Consensus 975 i~eL~~e~~~Lk~el~~l~~~l~ 997 (1509)
..+++.++..++.++.+.+.++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 440
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=76.17 E-value=2.2 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999999887654
No 441
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.13 E-value=1.2e+02 Score=38.84 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 856 KAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQL 935 (1509)
Q Consensus 856 ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~ 935 (1509)
.++.........++....-.+.........-+......++.++.+.+.++...+........+ ....+...+.+++.
T Consensus 135 ~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~---~~~~~~~~l~~l~~ 211 (498)
T TIGR03007 135 LAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD---QEGDYYSEISEAQE 211 (498)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc---chhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 936 QVEEANFRILKEQEAARKAIEEAPPIVKETP-----VIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1509)
Q Consensus 936 qleel~~~l~~e~e~~~~~~ee~~~~~~e~~-----~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~ 1010 (1509)
++.+.+.++...+.....+............ .......++.+++.++..+......-.-++..+++++..++...
T Consensus 212 ~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 212 ELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q ss_pred HH---------------------HHHHHHHHHHHHHHHHHHHHhc
Q 000440 1011 TE---------------------LVKKLEDTEEKNQVIRQQALAM 1034 (1509)
Q Consensus 1011 ee---------------------l~~el~~~eee~~~L~qq~~~l 1034 (1509)
.+ +...+.+.+.+...++.+...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l 336 (498)
T TIGR03007 292 EEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAEL 336 (498)
T ss_pred HhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.08 E-value=3.1 Score=50.64 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=32.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHHHHhcC
Q 000440 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1509)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1509)
+....+...+-.|+|.|.+|+|||.++|++|+-+-..+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 666666666667999999999999999999999987643
No 443
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=75.93 E-value=2.1 Score=48.75 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..+.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999988876543
No 444
>PF13514 AAA_27: AAA domain
Probab=75.88 E-value=1.5e+02 Score=42.11 Aligned_cols=190 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 000440 847 ACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKA------ 920 (1509)
Q Consensus 847 ~r~~y~~~~ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~------ 920 (1509)
+..-|++.-+.-..-|..-+-...+++++...........+......++.++.++..++...+.....++..+.
T Consensus 139 a~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~ 218 (1111)
T PF13514_consen 139 ADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLA 218 (1111)
T ss_pred HHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCcc
Q 000440 921 ------------------------------QEIAKLQDALQAMQLQVEEANFRILK---------EQEAARKAIEEAPPI 961 (1509)
Q Consensus 921 ------------------------------~e~~kL~~~~~eLe~qleel~~~l~~---------e~e~~~~~~ee~~~~ 961 (1509)
.+...++..+..++.++..+..++.. ....+..+.++....
T Consensus 219 ~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~ 298 (1111)
T PF13514_consen 219 ELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEY 298 (1111)
T ss_pred HHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHH
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 962 VKETPVIVHDTEKIESLTAEVDSLKALLL---------------SERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQV 1026 (1509)
Q Consensus 962 ~~e~~~l~~~~~~i~eL~~e~~~Lk~el~---------------~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~ 1026 (1509)
.+....+...+.++..+..++..+..++. .....+.++..+...+.........++.+.+.+...
T Consensus 299 ~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~ 378 (1111)
T PF13514_consen 299 RKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQ 378 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCc
Q 000440 1027 IRQQALAMSP 1036 (1509)
Q Consensus 1027 L~qq~~~l~~ 1036 (1509)
+..+...+++
T Consensus 379 ~~~~~~~l~~ 388 (1111)
T PF13514_consen 379 LQAELAALPA 388 (1111)
T ss_pred HHHHHhhCcc
No 445
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.83 E-value=2.1 Score=48.84 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999887654
No 446
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=75.73 E-value=2.1 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998887643
No 447
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=75.71 E-value=2.1 Score=50.38 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=20.8
Q ss_pred CeEEEecCCCCCchhHHHHHHHHH
Q 000440 149 SNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
.-.|+|.|+||+|||++|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999998877765
No 448
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=75.68 E-value=2.2 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988876543
No 449
>PRK09087 hypothetical protein; Validated
Probab=75.68 E-value=3.5 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
.+..++|.|+||+|||..+..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456699999999999988886554
No 450
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.62 E-value=2.1 Score=47.91 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+ +.+.|.|+||||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999988876544
No 451
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=75.47 E-value=2.2 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988876543
No 452
>PRK05922 type III secretion system ATPase; Validated
Probab=75.45 E-value=3.1 Score=51.36 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 133 ~aia~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+...-+|...+..-++.|.|.|.|.+|+|||+..+.+.++.
T Consensus 141 l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 141 FPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 34444455556667889999999999999999988887654
No 453
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=75.43 E-value=3.5 Score=49.70 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=26.5
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+..-..|+|.|++|+|||..++.+-+|+-..
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3445689999999999999999999998753
No 454
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=75.43 E-value=4.8 Score=49.62 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=20.6
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
-.|++.|++|+|||+.++.+-+.+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999999875443
No 455
>PRK02496 adk adenylate kinase; Provisional
Probab=75.35 E-value=2.3 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988766
No 456
>PRK06526 transposase; Provisional
Probab=75.26 E-value=2.5 Score=48.80 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHHh
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1509)
+.+.+++.|.+|+|||..+..+...++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45679999999999999999998877754
No 457
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=75.18 E-value=2.3 Score=47.36 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
.+.+.+.|.|+||||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998887653
No 458
>PRK05439 pantothenate kinase; Provisional
Probab=75.13 E-value=4.8 Score=47.72 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.0
Q ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 146 EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
.+..--|-|+|-||||||+.++.+...|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455667889999999999999988887754
No 459
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.12 E-value=2.3 Score=47.73 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
...+.+.|.|+||||||+..|.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888754
No 460
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.08 E-value=2.3 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 461
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=75.06 E-value=2.3 Score=48.32 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999877654
No 462
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.00 E-value=1.2e+02 Score=34.98 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000440 975 IESLTAEV 982 (1509)
Q Consensus 975 i~eL~~e~ 982 (1509)
+.+++.++
T Consensus 84 ~~e~~~~i 91 (246)
T PF00769_consen 84 LREAEAEI 91 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.00 E-value=2.4 Score=45.85 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988876543
No 464
>PLN02318 phosphoribulokinase/uridine kinase
Probab=74.97 E-value=3.5 Score=52.44 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhc-CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 134 AIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 134 aia~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
=++-+|-.-+... ...--|-|+|.||||||+.++.|...
T Consensus 49 ~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 49 FVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred hhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3444454444332 23356778999999999999887543
No 465
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=74.97 E-value=2.5 Score=45.48 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHH
Q 000440 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
+.|+|.|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999887763
No 466
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.89 E-value=3.5 Score=53.50 Aligned_cols=58 Identities=31% Similarity=0.446 Sum_probs=39.7
Q ss_pred HHHHhhccCcCCCCchHHHHHH--HHHHHHHh-cCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 116 MMEQYKGAQFGELSPHVFAIAD--VAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 116 ~~~~y~~~~~~~~~PHi~aia~--~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..+.|+-....++.-|--.+.+ .+...+.. ....+.++|+|.+|+|||++++.+.+.+
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677877777777655554443 22332222 2345679999999999999999988765
No 467
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.82 E-value=4 Score=52.64 Aligned_cols=54 Identities=30% Similarity=0.559 Sum_probs=38.0
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000440 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 118 ~~y~~~~~~~~--~PHi~aia~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
++||-+.+.++ .+|+ -++...+...+ -.+++|++|..|.|||.+++.+-+.|-+
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45655555444 3555 33444444444 4789999999999999999999998864
No 468
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.80 E-value=2.4 Score=47.72 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1509)
...+.+.|.|+||||||+..+.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999988764
No 469
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=74.79 E-value=2.4 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.6
Q ss_pred CCeEEEecCCCCCchhHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKM 168 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~ 168 (1509)
+-.-++|.|.||||||+..+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 457899999999999987654
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.75 E-value=3.7 Score=51.03 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=46.5
Q ss_pred HHHHHHhhccCcCCCCchHHHHHHH--HHH--HHHhc-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 114 THMMEQYKGAQFGELSPHVFAIADV--AYR--AMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 114 ~~~~~~y~~~~~~~~~PHi~aia~~--Ay~--~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
+..+..|+-....+|.-|-=.|++- +++ .|... -+++-.+|+|.||+|||++.|.+-.-|
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4577889888889999998888753 555 33333 367889999999999999998876655
No 471
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=74.74 E-value=2.2 Score=48.52 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999998876533
No 472
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=74.68 E-value=43 Score=42.08 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=16.2
Q ss_pred ccchhHHhhchhHHHHHHhhccc
Q 000440 1353 FSNGEYVKAGLAELEQWCYDATE 1375 (1509)
Q Consensus 1353 ~s~G~qIr~nls~Le~W~~~~~~ 1375 (1509)
-+.-+-++.-=+++.+|+++.++
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhccH
Confidence 33444566666889999998764
No 473
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=74.67 E-value=2.4 Score=48.72 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999988876443
No 474
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=74.64 E-value=2.3 Score=47.21 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999887653
No 475
>PRK10908 cell division protein FtsE; Provisional
Probab=74.64 E-value=2.4 Score=47.77 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
...+.+.|.|+||||||+..+.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999887643
No 476
>PLN02348 phosphoribulokinase
Probab=74.62 E-value=3.8 Score=49.76 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
++.=-|-|+|-||||||+.++.|.+.|-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444555899999999999999888874
No 477
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=74.61 E-value=2.7 Score=46.04 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.2
Q ss_pred EEecCCCCCchhHHHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1509)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998864
No 478
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=74.57 E-value=2.4 Score=46.11 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.....+.|.|+||||||+..|.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999877655
No 479
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=74.50 E-value=3.3 Score=47.13 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHh-cCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000440 134 AIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1509)
Q Consensus 134 aia~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1509)
-+.+++|..|.. -..+.+-.++|++|+||||+.|.+-+.|.
T Consensus 16 plt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 16 PLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 345777776643 35678889999999999999998766554
No 480
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.50 E-value=2.5 Score=47.21 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q 000440 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1509)
..+.+.|.|+||||||+..+.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999999887753
No 481
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=74.46 E-value=2.5 Score=47.27 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888876543
No 482
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=74.45 E-value=2.4 Score=48.08 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999877544
No 483
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.32 E-value=1.6e+02 Score=37.98 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1509)
Q Consensus 875 ~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~ 954 (1509)
.+|...+.+....-. ..++..--.+++.++.+...+..+... ......++..+++++-.++..++.+++-.++..+.+
T Consensus 119 erLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~-~eer~~kl~~~~qe~naeL~rarqreemneeh~~rl 196 (916)
T KOG0249|consen 119 ERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGN-IEERTRKLEEQLEELNAELQRARQREKMNEEHNKRL 196 (916)
T ss_pred HHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q ss_pred HHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000440 955 IEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALA 1033 (1509)
Q Consensus 955 ~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~ 1033 (1509)
.... .+.++.-.++.-...+..+.|.++++...+.+.++....+.+....+++..+.++|+.+.+.
T Consensus 197 sdtv-------------dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~ 262 (916)
T KOG0249|consen 197 SDTV-------------DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLE 262 (916)
T ss_pred cccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 484
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=74.32 E-value=2.3 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=0.0
Q ss_pred EEEecCCCCCchhHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRY 172 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~y 172 (1509)
.|+|.|+||+|||+++--+++.
T Consensus 148 gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 148 GVLITGKSGVGKSETALELINR 169 (304)
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
No 485
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=74.29 E-value=2.5 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
.+.+.+.|.|+||||||+.+.-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
No 486
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=74.21 E-value=2.5 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
...+.+.|.|++|||||+..|.|.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILA 57 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
No 487
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.17 E-value=2.2e+02 Score=38.57 Aligned_cols=175 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000440 855 KKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK----AQEIAKLQDAL 930 (1509)
Q Consensus 855 ~ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k----~~e~~kL~~~~ 930 (1509)
..++.........++....-.+.....+...-+......+++++.+.+.+++..+........+. .++...+..++
T Consensus 167 ~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql 246 (754)
T TIGR01005 167 KLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTEL 246 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhCCccccccccccccHHHHHHHHH-------HHHH
Q 000440 931 QAMQLQVEEANFRILKEQEAAR-------------------KAIEEAPPIVKETPVIVHDTEKIESLTA-------EVDS 984 (1509)
Q Consensus 931 ~eLe~qleel~~~l~~e~e~~~-------------------~~~ee~~~~~~e~~~l~~~~~~i~eL~~-------e~~~ 984 (1509)
...+.+..+.+.+....+..+. ..+.++ +.++...+.++.++.. .+..
T Consensus 247 ~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L------~~~l~~l~~~~~~l~~~y~~~hP~v~~ 320 (754)
T TIGR01005 247 SRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRL------RERQAELRATIADLSTTMLANHPRVVA 320 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHH------HHHHHHHHHHHHHHHHhhCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 985 LKALLLSERQSAEE-ARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 985 Lk~el~~l~~~l~~-~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
++.++++++.++.+ ..+-....+...+......+.++.....+++++..++
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~ 372 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 488
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.12 E-value=1.2e+02 Score=31.93 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 874 LRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARK 953 (1509)
Q Consensus 874 l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~ 953 (1509)
+.......+..+.+......+...+..++...+..+....+++. +....+.....++.++..+...+..+++++..
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er----e~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER----ELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 954 AIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEE 998 (1509)
Q Consensus 954 ~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~ 998 (1509)
+.... +....+...++.+-+.+++.+.+++.+
T Consensus 120 lk~~~-------------~~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 120 LKNQL-------------QQRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
No 489
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=74.07 E-value=2.5 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
...+.+.|.|+||||||+..+.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 490
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.05 E-value=1.5e+02 Score=40.36 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1509)
Q Consensus 875 ~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~ 954 (1509)
.+...++.+.........+++.++..+..++........-... ....|.+++..++..+......+...+++..+.
T Consensus 434 e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~----~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 434 ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE----IKELLKEEKEKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000440 955 IEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAM 1034 (1509)
Q Consensus 955 ~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l 1034 (1509)
...+ ++ .+..+..+.+.-.++......++..++.....++.+-..++...+.-.+-+.....+..++...
T Consensus 510 ~~~l----~~------~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 510 KATL----KE------EEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN 579 (1041)
T ss_pred HHHH----HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHH
No 491
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=74.05 E-value=2.5 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
.+.+.+.|.|+||||||+..+.|+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 492
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.03 E-value=2.6 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
...+.+.|.|++|||||+..+.++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 493
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.97 E-value=2.4 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=0.0
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q 000440 152 ILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1509)
|+|+|..|||||+|..-+++++
T Consensus 261 iLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 261 ILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
No 494
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=73.97 E-value=2.5 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
...+.+.|.|+||||||+..|.|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=73.95 E-value=2.7 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q 000440 147 GKSNSILVSGESGAGKTETTKMLM 170 (1509)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1509)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 496
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=73.92 E-value=2.7 Score=47.37 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=0.0
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q 000440 151 SILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1509)
.|.|.|.||||||+.++.+...|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
No 497
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.91 E-value=1.2e+02 Score=37.38 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHH
Q 000440 905 LQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDS 984 (1509)
Q Consensus 905 le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l~~~~~~i~eL~~e~~~ 984 (1509)
+........++.+....-...++...+++..++.-....+.+|+-+.+.+.+++ .+.++--+.|+..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeql-------------Nd~~elHq~Ei~~ 280 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQL-------------NDLTELHQNEIYN 280 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000440 985 LKALLLSERQSAE-EARKACMDAEVRNTELVKKLEDTEEKNQVIRQQALAMSP 1036 (1509)
Q Consensus 985 Lk~el~~l~~~l~-~~e~e~~~~~~~~eel~~el~~~eee~~~L~qq~~~l~~ 1036 (1509)
||++|...+++++ ...+..+++.+..+.....+..+| ...+||...+..
T Consensus 281 LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE---~~~~Qq~~q~e~ 330 (395)
T PF10267_consen 281 LKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE---QQQQQQVVQLEG 330 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhhhhhhhcc
No 498
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.89 E-value=1.4e+02 Score=33.39 Aligned_cols=128 Identities=23% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000440 790 IQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRV 869 (1509)
Q Consensus 790 IQ~~~R~~~~Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ~~~R~~~ 869 (1509)
.|..|+.+....-|+..|+-.+.==+.+-+..-|+-+.-.++ +..+|.. ..
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~-------l~~l~~~----------------------~~ 131 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRE-------LATLRAN----------------------EK 131 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH-------HHHHHhh----------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000440 870 ARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQE 949 (1509)
Q Consensus 870 ark~l~~lk~~a~~~~~l~~~~~kLe~kv~eL~~~le~e~~~~~~le~~k~~e~~kL~~~~~eLe~qleel~~~l~~e~e 949 (1509)
+.++...++...+....+.+.+..+..+..-++.+++ ++..+.+..++....|++|.++.........+
T Consensus 132 ~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~-----------~~~~~Le~~~~~~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 132 AMKENEALKKQLENSSKLEEENDKLKADLEKLETELE-----------KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred HHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q ss_pred HHHHHHHh
Q 000440 950 AARKAIEE 957 (1509)
Q Consensus 950 ~~~~~~ee 957 (1509)
+...+.++
T Consensus 201 e~~~Lq~~ 208 (216)
T KOG1962|consen 201 EYSKLQEQ 208 (216)
T ss_pred HHHHHHHH
No 499
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=73.88 E-value=4.5 Score=53.00 Aligned_cols=56 Identities=25% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHHhcCC-CeEEEecCCCCCchhHHHHHHHHHH
Q 000440 116 MMEQYKGAQFGELSPHVFAIADVAYRAMINEGK-SNSILVSGESGAGKTETTKMLMRYL 173 (1509)
Q Consensus 116 ~~~~y~~~~~~~~~PHi~aia~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~~~~yl 173 (1509)
..+.|+-..+.++--|-.++ ..++.....++ ..+++++|+.|.|||++|+.+.+.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v--~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIV--QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
No 500
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.88 E-value=2.4e+02 Score=35.28 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 000440 832 TKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKL---------EKRVEELT 902 (1509)
Q Consensus 832 ~~aA~~IQ~~~R~~~~r~~y~~~~ka~~~iQ~~~R~~~ark~l~~lk~~a~~~~~l~~~~~kL---------e~kv~eL~ 902 (1509)
..|+.+..+....|.....-.+.........-.-.....-+. ++...+..+...++.+.-. ..++.++.
T Consensus 144 ~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~--~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~ 221 (444)
T TIGR03017 144 RFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALRE--DLARAQSKLSAYQQEKGIVSSDERLDVERARLNELS 221 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q 000440 903 WRLQFEKQLRTNLEEE--------------KAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVI 968 (1509)
Q Consensus 903 ~~le~e~~~~~~le~~--------------k~~e~~kL~~~~~eLe~qleel~~~l~~e~e~~~~~~ee~~~~~~e~~~l 968 (1509)
.++...+..+.+.+.. ....+..++.++.+++.++.++.......--....+..+...+.+.+...
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 222 AQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAE 301 (444)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000440 969 VHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA---EVRNTELVKKLEDTEEKNQVIRQQALAMS 1035 (1509)
Q Consensus 969 ~~~~~~i~eL~~e~~~Lk~el~~l~~~l~~~e~e~~~~---~~~~eel~~el~~~eee~~~L~qq~~~l~ 1035 (1509)
.......+......++....+++..+++.+.++..+ ......+..+++-.++....+.++..+..
T Consensus 302 --~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 302 --IKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!