Query 000441
Match_columns 1508
No_of_seqs 280 out of 416
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 2E-101 4E-106 991.4 65.6 907 1-932 164-1117(1266)
2 KOG1525 Sister chromatid cohes 99.6 7.7E-12 1.7E-16 164.7 40.8 105 972-1082 982-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 98.9 1.7E-09 3.8E-14 93.7 6.4 44 1209-1252 7-50 (55)
4 PTZ00429 beta-adaptin; Provisi 98.9 1.8E-05 3.9E-10 102.6 42.5 391 99-585 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.7 0.0001 2.2E-09 96.1 43.0 506 72-659 21-569 (1075)
6 PTZ00429 beta-adaptin; Provisi 98.5 0.00013 2.7E-09 95.0 34.7 343 75-507 88-436 (746)
7 KOG0414 Chromosome condensatio 98.5 0.019 4.1E-07 75.8 51.0 442 75-562 295-797 (1251)
8 KOG1020 Sister chromatid cohes 98.4 0.021 4.6E-07 76.7 49.6 163 75-242 796-963 (1692)
9 PF01602 Adaptin_N: Adaptin N 98.2 0.00068 1.5E-08 85.0 31.1 117 75-199 62-179 (526)
10 PF01602 Adaptin_N: Adaptin N 98.1 0.0036 7.7E-08 78.6 32.3 239 435-721 268-514 (526)
11 PRK09687 putative lyase; Provi 97.8 0.00024 5.2E-09 83.0 13.2 145 76-237 41-186 (280)
12 KOG1060 Vesicle coat complex A 97.7 0.018 3.8E-07 73.2 28.4 392 99-564 42-439 (968)
13 KOG1824 TATA-binding protein-i 97.5 0.4 8.6E-06 62.6 37.4 586 34-637 454-1184(1233)
14 PRK09687 putative lyase; Provi 97.5 0.00099 2.2E-08 77.9 13.1 131 90-237 88-219 (280)
15 KOG2025 Chromosome condensatio 97.4 0.17 3.7E-06 64.1 31.5 136 90-236 83-219 (892)
16 KOG1020 Sister chromatid cohes 97.4 0.15 3.2E-06 69.2 31.9 153 50-206 810-965 (1692)
17 KOG1824 TATA-binding protein-i 97.3 1.4 3.1E-05 57.8 41.5 169 75-243 233-468 (1233)
18 KOG1060 Vesicle coat complex A 97.2 0.47 1E-05 61.0 32.4 182 54-244 69-251 (968)
19 PF12717 Cnd1: non-SMC mitotic 97.1 0.029 6.3E-07 61.3 18.9 94 146-241 1-94 (178)
20 KOG2023 Nuclear transport rece 97.1 0.043 9.4E-07 68.7 21.5 367 75-481 378-789 (885)
21 smart00333 TUDOR Tudor domain. 97.0 0.0013 2.7E-08 58.2 5.7 44 1209-1254 4-48 (57)
22 KOG2023 Nuclear transport rece 97.0 1.4 3.1E-05 56.0 33.0 156 17-203 127-287 (885)
23 KOG0212 Uncharacterized conser 96.9 1 2.2E-05 56.4 30.7 416 38-486 27-494 (675)
24 COG5218 YCG1 Chromosome conden 96.9 0.13 2.9E-06 63.8 22.7 256 99-389 98-372 (885)
25 PF13646 HEAT_2: HEAT repeats; 96.9 0.007 1.5E-07 57.4 9.9 83 138-235 4-88 (88)
26 KOG1062 Vesicle coat complex A 96.8 0.26 5.7E-06 63.4 25.8 354 89-542 104-467 (866)
27 PLN03200 cellulose synthase-in 96.8 0.42 9.1E-06 68.3 30.2 150 430-582 647-812 (2102)
28 cd04508 TUDOR Tudor domains ar 96.8 0.0028 6E-08 54.1 5.6 43 1211-1254 1-44 (48)
29 PRK13800 putative oxidoreducta 96.7 0.0094 2E-07 80.3 12.9 120 93-237 622-741 (897)
30 smart00743 Agenet Tudor-like d 96.7 0.0027 5.8E-08 57.2 5.3 36 1209-1245 4-39 (61)
31 PLN03200 cellulose synthase-in 96.7 7.4 0.00016 56.5 40.0 445 91-584 57-596 (2102)
32 KOG1061 Vesicle coat complex A 96.5 0.78 1.7E-05 59.3 26.4 138 93-241 14-152 (734)
33 PRK13800 putative oxidoreducta 96.4 0.015 3.2E-07 78.5 12.0 117 97-238 719-835 (897)
34 PF12348 CLASP_N: CLASP N term 96.3 0.051 1.1E-06 61.0 13.8 145 94-241 55-208 (228)
35 KOG1242 Protein containing ada 96.3 2.3 5E-05 54.0 28.7 231 132-412 215-449 (569)
36 KOG2171 Karyopherin (importin) 96.1 9.2 0.0002 51.8 46.8 644 31-741 49-775 (1075)
37 PF12719 Cnd3: Nuclear condens 96.0 0.085 1.8E-06 62.3 14.2 99 101-203 36-145 (298)
38 KOG1061 Vesicle coat complex A 96.0 5.2 0.00011 52.1 30.1 146 52-204 45-192 (734)
39 COG5096 Vesicle coat complex, 95.9 1.1 2.5E-05 58.6 24.4 142 54-240 53-196 (757)
40 PF10508 Proteasom_PSMB: Prote 95.9 2.7 5.9E-05 53.5 27.7 209 23-236 43-269 (503)
41 PF12348 CLASP_N: CLASP N term 95.9 0.15 3.3E-06 57.3 14.8 102 95-201 97-206 (228)
42 PF13646 HEAT_2: HEAT repeats; 95.8 0.038 8.2E-07 52.4 8.3 86 94-197 1-88 (88)
43 COG5096 Vesicle coat complex, 95.6 4.7 0.0001 53.1 27.8 129 101-240 28-157 (757)
44 KOG1949 Uncharacterized conser 95.3 1.5 3.3E-05 55.9 21.4 230 95-335 177-424 (1005)
45 cd00020 ARM Armadillo/beta-cat 94.6 0.048 1E-06 53.8 5.1 106 93-198 8-117 (120)
46 KOG0212 Uncharacterized conser 94.5 20 0.00043 45.6 27.8 152 90-241 165-326 (675)
47 KOG0414 Chromosome condensatio 94.3 1.6 3.5E-05 58.6 18.9 151 74-230 896-1055(1251)
48 COG5098 Chromosome condensatio 94.3 1 2.2E-05 57.3 16.0 133 76-241 283-417 (1128)
49 COG5240 SEC21 Vesicle coat com 94.1 23 0.0005 45.0 29.9 50 454-503 319-368 (898)
50 PF09038 53-BP1_Tudor: Tumour 94.0 0.095 2.1E-06 53.5 5.6 45 1206-1251 1-45 (122)
51 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.14 3E-06 51.0 6.6 68 170-238 25-95 (97)
52 PF10508 Proteasom_PSMB: Prote 93.6 0.48 1E-05 60.1 12.3 148 89-239 74-231 (503)
53 PF12717 Cnd1: non-SMC mitotic 93.5 0.86 1.9E-05 49.9 12.6 82 79-163 12-93 (178)
54 PF02985 HEAT: HEAT repeat; I 93.1 0.13 2.9E-06 40.2 3.9 29 173-201 1-29 (31)
55 KOG4675 Uncharacterized conser 93.0 0.057 1.2E-06 61.9 2.4 63 1201-1263 152-222 (273)
56 KOG1949 Uncharacterized conser 92.9 0.38 8.2E-06 61.0 9.4 119 90-212 218-346 (1005)
57 KOG1059 Vesicle coat complex A 92.9 40 0.00088 44.1 30.9 120 78-205 95-214 (877)
58 PF05804 KAP: Kinesin-associat 92.8 4.5 9.8E-05 53.3 19.3 178 474-661 289-478 (708)
59 PF13513 HEAT_EZ: HEAT-like re 92.6 0.091 2E-06 46.0 2.7 53 147-199 1-55 (55)
60 KOG2011 Sister chromatid cohes 92.4 0.22 4.7E-06 66.4 6.8 128 132-272 285-421 (1048)
61 PF01347 Vitellogenin_N: Lipop 92.1 2.2 4.7E-05 55.4 15.6 139 75-234 459-617 (618)
62 KOG2259 Uncharacterized conser 92.1 0.29 6.3E-06 61.8 6.9 97 136-236 376-472 (823)
63 KOG0413 Uncharacterized conser 92.0 55 0.0012 44.1 26.5 70 128-198 467-536 (1529)
64 PF12719 Cnd3: Nuclear condens 91.9 9.1 0.0002 45.4 19.1 127 113-241 4-145 (298)
65 PF10363 DUF2435: Protein of u 91.3 1.5 3.2E-05 43.4 9.6 87 132-222 2-89 (92)
66 cd00020 ARM Armadillo/beta-cat 91.2 0.36 7.7E-06 47.6 5.5 98 140-237 14-118 (120)
67 KOG2259 Uncharacterized conser 91.1 1.5 3.2E-05 55.9 11.5 112 127-241 192-312 (823)
68 PF13513 HEAT_EZ: HEAT-like re 90.9 0.22 4.9E-06 43.6 3.3 52 186-237 1-55 (55)
69 PF05918 API5: Apoptosis inhib 90.6 64 0.0014 41.8 28.2 350 474-890 19-399 (556)
70 PF06003 SMN: Survival motor n 90.3 0.47 1E-05 55.4 6.2 50 1206-1255 67-117 (264)
71 KOG2025 Chromosome condensatio 90.2 45 0.00097 43.7 23.1 272 37-336 64-358 (892)
72 KOG0915 Uncharacterized conser 89.9 1.1E+02 0.0024 43.4 28.0 69 171-240 997-1069(1702)
73 KOG1078 Vesicle coat complex C 89.9 11 0.00024 49.3 17.8 224 32-271 221-517 (865)
74 PF12765 Cohesin_HEAT: HEAT re 89.2 0.48 1E-05 40.0 3.7 40 157-196 3-42 (42)
75 COG5098 Chromosome condensatio 89.0 0.83 1.8E-05 58.0 7.0 109 82-191 336-464 (1128)
76 PF12755 Vac14_Fab1_bd: Vacuol 89.0 1 2.2E-05 44.8 6.5 85 109-193 3-89 (97)
77 TIGR02270 conserved hypothetic 88.8 3.4 7.3E-05 51.4 12.3 24 135-158 88-111 (410)
78 KOG1820 Microtubule-associated 88.7 5.1 0.00011 53.5 14.4 151 88-242 249-446 (815)
79 KOG0915 Uncharacterized conser 88.0 1.5E+02 0.0032 42.3 32.9 148 95-242 1001-1163(1702)
80 KOG1943 Beta-tubulin folding c 87.7 1.3E+02 0.0028 41.4 29.4 180 34-243 514-709 (1133)
81 KOG1242 Protein containing ada 86.3 14 0.00031 47.3 15.6 185 49-241 209-403 (569)
82 KOG2011 Sister chromatid cohes 86.3 11 0.00024 51.2 15.3 165 34-243 264-440 (1048)
83 COG1413 FOG: HEAT repeat [Ener 85.8 4.9 0.00011 47.9 11.1 29 212-240 182-210 (335)
84 TIGR02270 conserved hypothetic 84.9 8.2 0.00018 48.0 12.6 123 81-237 21-144 (410)
85 COG1413 FOG: HEAT repeat [Ener 83.8 8.5 0.00018 45.9 11.9 133 81-239 97-242 (335)
86 KOG2956 CLIP-associating prote 83.0 11 0.00025 46.8 12.2 153 82-241 322-479 (516)
87 KOG1967 DNA repair/transcripti 82.2 7.7 0.00017 51.4 11.0 150 90-239 865-1024(1030)
88 COG5240 SEC21 Vesicle coat com 81.3 16 0.00034 46.3 12.7 91 172-266 487-579 (898)
89 PF14500 MMS19_N: Dos2-interac 80.8 1.3E+02 0.0027 35.6 23.2 163 175-374 2-169 (262)
90 PF14676 FANCI_S2: FANCI solen 79.5 3.3 7.1E-05 45.0 5.6 120 76-198 39-158 (158)
91 KOG1241 Karyopherin (importin) 79.5 2.3E+02 0.005 37.8 30.7 157 84-241 355-532 (859)
92 KOG0392 SNF2 family DNA-depend 78.9 23 0.00049 48.7 13.7 137 71-212 792-944 (1549)
93 KOG0166 Karyopherin (importin) 78.7 4.9 0.00011 50.8 7.5 141 92-236 152-305 (514)
94 COG5537 IRR1 Cohesin [Cell div 78.4 2.8 6E-05 53.0 5.1 100 137-240 279-387 (740)
95 KOG1059 Vesicle coat complex A 78.0 2.4E+02 0.0052 37.5 21.6 164 74-238 163-364 (877)
96 smart00638 LPD_N Lipoprotein N 77.6 60 0.0013 42.0 17.3 145 83-237 388-543 (574)
97 KOG2051 Nonsense-mediated mRNA 77.4 19 0.00042 48.6 12.4 195 75-282 481-711 (1128)
98 KOG0213 Splicing factor 3b, su 76.6 47 0.001 43.6 14.9 188 34-240 731-955 (1172)
99 PF05004 IFRD: Interferon-rela 76.4 71 0.0015 38.4 16.2 67 478-544 46-114 (309)
100 KOG1058 Vesicle coat complex C 76.1 2.8E+02 0.0061 37.1 31.3 144 86-241 14-165 (948)
101 KOG2122 Beta-catenin-binding p 76.0 2.7E+02 0.0058 39.9 22.0 69 458-526 505-582 (2195)
102 PF04826 Arm_2: Armadillo-like 75.8 30 0.00064 40.5 12.4 144 48-193 89-254 (254)
103 KOG0413 Uncharacterized conser 75.1 8.8 0.00019 50.9 8.4 136 100-240 939-1074(1529)
104 PF12074 DUF3554: Domain of un 75.0 43 0.00094 40.4 14.1 72 85-162 19-90 (339)
105 PF13001 Ecm29: Proteasome sta 74.5 67 0.0014 41.2 16.2 195 16-213 270-498 (501)
106 KOG1243 Protein kinase [Genera 74.2 9 0.00019 49.7 8.2 141 93-239 294-437 (690)
107 PF12765 Cohesin_HEAT: HEAT re 74.1 3.7 7.9E-05 34.8 3.3 40 195-234 2-42 (42)
108 PF05004 IFRD: Interferon-rela 73.2 81 0.0017 38.0 15.5 159 84-242 74-260 (309)
109 KOG1248 Uncharacterized conser 73.0 4E+02 0.0087 37.4 37.6 93 451-545 751-856 (1176)
110 PF01347 Vitellogenin_N: Lipop 71.5 72 0.0016 41.6 15.9 141 84-236 427-586 (618)
111 KOG2213 Apoptosis inhibitor 5/ 71.3 2.3E+02 0.0049 35.3 18.1 224 130-396 22-275 (460)
112 smart00638 LPD_N Lipoprotein N 70.5 62 0.0013 41.9 14.8 94 86-192 475-569 (574)
113 KOG1077 Vesicle coat complex A 70.2 3.7E+02 0.008 35.8 22.9 302 461-800 97-416 (938)
114 KOG1967 DNA repair/transcripti 70.1 38 0.00083 45.4 12.4 142 53-195 860-1018(1030)
115 PF02985 HEAT: HEAT repeat; I 69.4 8.1 0.00018 30.2 4.1 29 212-240 2-30 (31)
116 PF05804 KAP: Kinesin-associat 68.5 4.2E+02 0.009 35.8 21.7 163 374-543 463-647 (708)
117 PF12530 DUF3730: Protein of u 68.2 2.3E+02 0.0049 32.7 17.2 128 455-585 55-189 (234)
118 PF10363 DUF2435: Protein of u 67.4 20 0.00043 35.5 7.3 84 98-187 9-92 (92)
119 PF05641 Agenet: Agenet domain 67.2 9.5 0.00021 35.5 4.8 35 1210-1245 3-40 (68)
120 PF12460 MMS19_C: RNAPII trans 66.1 1.1E+02 0.0023 38.3 15.1 176 34-218 209-410 (415)
121 KOG0166 Karyopherin (importin) 66.1 3.9E+02 0.0085 34.6 24.1 178 94-279 68-258 (514)
122 KOG2933 Uncharacterized conser 65.4 38 0.00083 40.5 10.1 164 74-241 107-279 (334)
123 PF12231 Rif1_N: Rap1-interact 65.3 3.4E+02 0.0073 33.6 19.0 188 34-242 153-355 (372)
124 KOG1240 Protein kinase contain 63.7 92 0.002 43.2 14.1 162 73-235 441-642 (1431)
125 PF08167 RIX1: rRNA processing 61.8 54 0.0012 35.7 10.0 139 432-601 19-163 (165)
126 PF13251 DUF4042: Domain of un 61.7 87 0.0019 35.0 11.7 131 107-240 1-175 (182)
127 PF15057 DUF4537: Domain of un 60.1 17 0.00038 37.9 5.6 42 1211-1253 1-42 (124)
128 PF14664 RICTOR_N: Rapamycin-i 60.1 3.3E+02 0.0072 33.7 17.5 226 5-241 7-271 (371)
129 KOG4224 Armadillo repeat prote 59.8 4E+02 0.0086 33.0 17.0 218 475-726 208-441 (550)
130 KOG0168 Putative ubiquitin fus 59.2 3.5E+02 0.0077 36.7 17.7 180 423-608 243-440 (1051)
131 KOG1062 Vesicle coat complex A 58.8 6.1E+02 0.013 34.4 28.3 371 85-486 135-562 (866)
132 KOG0644 Uncharacterized conser 58.5 11 0.00023 49.5 4.5 47 1207-1253 978-1036(1113)
133 PF00567 TUDOR: Tudor domain; 58.0 21 0.00046 35.2 5.7 48 1206-1254 50-98 (121)
134 PF12830 Nipped-B_C: Sister ch 57.6 42 0.00091 37.3 8.5 72 170-242 6-77 (187)
135 KOG2032 Uncharacterized conser 57.3 5.3E+02 0.011 33.1 19.0 116 168-288 254-373 (533)
136 PF13251 DUF4042: Domain of un 56.8 46 0.001 37.1 8.6 99 100-201 48-174 (182)
137 COG5218 YCG1 Chromosome conden 56.5 51 0.0011 42.3 9.5 101 133-234 91-194 (885)
138 COG5537 IRR1 Cohesin [Cell div 56.2 71 0.0015 41.2 10.7 130 102-242 285-428 (740)
139 PF05918 API5: Apoptosis inhib 55.5 6.1E+02 0.013 33.3 25.4 159 486-657 144-315 (556)
140 KOG3026 Splicing factor SPF30 54.0 19 0.00041 41.1 5.0 36 1208-1243 91-126 (262)
141 KOG2956 CLIP-associating prote 53.9 1.4E+02 0.003 37.8 12.5 125 418-546 353-478 (516)
142 KOG1943 Beta-tubulin folding c 53.9 8.2E+02 0.018 34.3 33.8 41 172-212 341-381 (1133)
143 KOG0211 Protein phosphatase 2A 52.6 59 0.0013 43.6 9.9 145 94-241 200-347 (759)
144 KOG1517 Guanine nucleotide bin 51.9 1.9E+02 0.0042 39.8 14.0 139 84-242 595-735 (1387)
145 PF04826 Arm_2: Armadillo-like 50.9 93 0.002 36.5 10.2 174 87-271 11-189 (254)
146 PF04118 Dopey_N: Dopey, N-ter 49.9 1.3E+02 0.0028 36.3 11.4 110 78-198 128-251 (307)
147 COG5064 SRP1 Karyopherin (impo 49.4 1.1E+02 0.0023 37.2 10.2 141 93-239 72-253 (526)
148 KOG0211 Protein phosphatase 2A 49.0 1.1E+02 0.0023 41.3 11.4 66 172-237 596-662 (759)
149 KOG2393 Transcription initiati 49.0 39 0.00084 42.8 7.0 24 1402-1426 292-315 (555)
150 KOG2160 Armadillo/beta-catenin 47.4 1.5E+02 0.0033 36.1 11.4 149 86-241 78-242 (342)
151 COG5116 RPN2 26S proteasome re 45.2 38 0.00083 43.1 6.1 61 142-207 525-587 (926)
152 KOG2153 Protein involved in th 44.6 63 0.0014 42.0 7.9 69 135-203 277-355 (704)
153 KOG2062 26S proteasome regulat 44.6 1.2E+02 0.0026 40.2 10.3 121 108-240 502-654 (929)
154 KOG1078 Vesicle coat complex C 42.8 1E+03 0.022 32.3 32.6 286 144-493 219-521 (865)
155 KOG1248 Uncharacterized conser 42.8 1.2E+03 0.026 33.1 54.3 177 54-242 55-256 (1176)
156 COG5181 HSH155 U2 snRNP splice 42.5 2.3E+02 0.0049 37.0 12.0 139 99-240 611-760 (975)
157 KOG1832 HIV-1 Vpr-binding prot 42.5 14 0.00031 48.6 2.1 24 671-694 751-774 (1516)
158 KOG0567 HEAT repeat-containing 42.4 3.8E+02 0.0083 31.9 13.0 35 208-242 216-252 (289)
159 PF11717 Tudor-knot: RNA bindi 42.1 38 0.00082 30.3 4.1 43 1210-1253 3-50 (55)
160 COG5181 HSH155 U2 snRNP splice 41.9 5.1E+02 0.011 34.1 14.8 172 15-198 762-944 (975)
161 KOG2213 Apoptosis inhibitor 5/ 40.5 8.5E+02 0.018 30.6 29.7 296 42-374 13-334 (460)
162 PF11707 Npa1: Ribosome 60S bi 39.6 1E+02 0.0022 37.4 8.6 81 85-165 49-146 (330)
163 KOG1832 HIV-1 Vpr-binding prot 38.4 18 0.0004 47.7 2.1 19 1013-1031 1124-1142(1516)
164 PF08324 PUL: PUL domain; Int 37.9 1.6E+02 0.0035 34.1 9.7 99 103-201 121-231 (268)
165 KOG4413 26S proteasome regulat 37.5 1.8E+02 0.0038 35.3 9.6 140 94-240 35-201 (524)
166 PF12074 DUF3554: Domain of un 37.5 1.6E+02 0.0035 35.6 9.8 86 150-239 4-90 (339)
167 PF14500 MMS19_N: Dos2-interac 37.0 3.1E+02 0.0067 32.4 11.7 124 13-138 118-255 (262)
168 PLN03076 ARF guanine nucleotid 36.1 1.8E+03 0.04 33.2 23.3 372 20-410 1222-1773(1780)
169 cd03568 VHS_STAM VHS domain fa 36.0 1.1E+02 0.0024 32.8 7.2 52 456-507 55-113 (144)
170 PF08506 Cse1: Cse1; InterPro 34.1 1E+03 0.022 29.6 16.0 51 453-503 226-283 (370)
171 PF00514 Arm: Armadillo/beta-c 33.6 66 0.0014 26.5 4.0 29 172-200 12-40 (41)
172 KOG1243 Protein kinase [Genera 33.4 79 0.0017 41.5 6.5 147 88-236 326-473 (690)
173 KOG2062 26S proteasome regulat 33.3 84 0.0018 41.5 6.6 64 172-238 519-583 (929)
174 KOG1058 Vesicle coat complex C 32.9 1.4E+03 0.031 31.0 17.8 119 76-198 301-422 (948)
175 KOG2160 Armadillo/beta-catenin 32.4 4.5E+02 0.0097 32.3 12.1 95 100-201 132-240 (342)
176 PF12530 DUF3730: Protein of u 32.4 6.3E+02 0.014 29.1 13.1 133 102-241 48-187 (234)
177 PF11701 UNC45-central: Myosin 32.0 1.1E+02 0.0023 33.2 6.4 120 20-143 5-137 (157)
178 cd03561 VHS VHS domain family; 31.9 4E+02 0.0087 27.9 10.5 81 159-241 26-114 (133)
179 KOG0943 Predicted ubiquitin-pr 30.5 1E+02 0.0023 42.3 6.8 8 1297-1304 1631-1638(3015)
180 KOG1991 Nuclear transport rece 30.2 1E+03 0.022 33.1 15.6 128 34-165 391-535 (1010)
181 PF08605 Rad9_Rad53_bind: Fung 29.6 90 0.002 33.1 5.1 49 1221-1272 21-69 (131)
182 cd03561 VHS VHS domain family; 29.3 1E+02 0.0022 32.3 5.6 72 433-508 36-116 (133)
183 PF14664 RICTOR_N: Rapamycin-i 29.3 4.4E+02 0.0095 32.8 11.8 113 93-207 26-143 (371)
184 KOG1991 Nuclear transport rece 29.1 1.8E+03 0.038 31.0 44.9 114 182-306 369-493 (1010)
185 KOG2050 Puf family RNA-binding 29.0 6.4E+02 0.014 33.1 12.9 91 274-381 285-377 (652)
186 PF02237 BPL_C: Biotin protein 28.6 1.3E+02 0.0029 26.0 5.2 39 1210-1251 2-40 (48)
187 KOG1240 Protein kinase contain 27.7 2.6E+02 0.0057 39.2 9.9 137 99-241 584-727 (1431)
188 cd03569 VHS_Hrs_Vps27p VHS dom 27.7 1.8E+02 0.0039 31.1 7.1 71 433-507 40-117 (142)
189 cd03567 VHS_GGA VHS domain fam 27.6 2.1E+02 0.0046 30.6 7.6 51 457-507 57-119 (139)
190 KOG0368 Acetyl-CoA carboxylase 27.5 8.9E+02 0.019 35.3 14.5 61 110-175 963-1023(2196)
191 KOG1820 Microtubule-associated 27.5 1.3E+03 0.028 31.8 16.3 103 137-239 257-365 (815)
192 KOG3723 PH domain protein Melt 27.4 3.9E+02 0.0084 34.6 10.6 115 468-591 159-273 (851)
193 cd06561 AlkD_like A new struct 27.0 2.2E+02 0.0047 31.2 7.9 78 146-231 119-196 (197)
194 KOG4224 Armadillo repeat prote 26.7 1.3E+03 0.029 28.7 18.4 145 92-239 208-363 (550)
195 PF12830 Nipped-B_C: Sister ch 26.5 5.7E+02 0.012 28.4 11.1 66 133-203 8-76 (187)
196 PF11919 DUF3437: Domain of un 26.1 1.4E+02 0.003 29.7 5.4 56 186-242 3-61 (90)
197 PLN00104 MYST -like histone ac 25.4 3.1E+02 0.0067 34.9 9.4 37 1208-1244 54-96 (450)
198 PF08569 Mo25: Mo25-like; Int 25.3 1.3E+03 0.029 28.3 17.6 166 59-240 49-239 (335)
199 KOG3687 Tuberin - Rap/ran-GTPa 24.7 2.1E+03 0.046 30.4 27.9 203 97-308 267-507 (1697)
200 PF00790 VHS: VHS domain; Int 24.3 1.7E+02 0.0037 30.9 6.2 81 159-242 31-120 (140)
201 PF08767 CRM1_C: CRM1 C termin 23.9 4.4E+02 0.0095 31.9 10.3 119 4-122 50-195 (319)
202 PF11865 DUF3385: Domain of un 23.8 5.3E+02 0.012 28.1 10.0 146 81-239 3-157 (160)
203 KOG3064 RNA-binding nuclear pr 23.6 28 0.0006 40.3 0.1 18 1440-1457 244-261 (303)
204 PF14838 INTS5_C: Integrator c 23.3 2E+03 0.043 29.5 22.7 48 453-503 196-244 (696)
205 PF06685 DUF1186: Protein of u 23.3 9.6E+02 0.021 28.3 12.4 169 20-228 3-192 (249)
206 cd03565 VHS_Tom1 VHS domain fa 22.8 2.6E+02 0.0056 29.9 7.2 52 456-507 57-118 (141)
207 KOG3723 PH domain protein Melt 22.5 5.7E+02 0.012 33.3 10.7 99 423-533 189-291 (851)
208 PF08064 UME: UME (NUC010) dom 22.1 1.5E+02 0.0033 30.0 5.1 61 55-115 13-77 (107)
209 PF06972 DUF1296: Protein of u 21.5 1.2E+02 0.0027 27.9 3.7 36 152-191 7-42 (60)
210 PF00514 Arm: Armadillo/beta-c 21.3 1.1E+02 0.0024 25.2 3.2 30 91-120 11-40 (41)
211 PF10266 Strumpellin: Heredita 21.1 1.7E+03 0.036 31.8 15.6 62 462-529 583-644 (1081)
212 PF08713 DNA_alkylation: DNA a 21.1 5.3E+02 0.011 28.5 9.7 146 23-194 55-211 (213)
213 KOG2137 Protein kinase [Signal 21.0 2.7E+02 0.0058 37.1 8.0 115 422-542 337-452 (700)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-101 Score=991.43 Aligned_cols=907 Identities=27% Similarity=0.411 Sum_probs=753.7
Q ss_pred CHHHHHHHhhcccCccHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC-CCCCCchhHH
Q 000441 1 MQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYH 76 (1508)
Q Consensus 1 M~dIL~~lIeEs~~Vp~~vLDvIL~qf~~~ks---~~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~-~~~~~~~kaH 76 (1508)
|.+||.++|+|.++||.++|++||.+|++++. +.|++||..+++.|++.+++.|++||+..|.++. .-+....++|
T Consensus 164 ~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHH
Confidence 78999999999999999999999999987754 3999999999999999999999999999988764 3455677899
Q ss_pred HHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000441 77 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 156 (1508)
Q Consensus 77 eLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~ 156 (1508)
+||++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||++
T Consensus 244 e~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 244 ELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVES 323 (1266)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred hHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441 157 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 157 ~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
+++||.+||+...+..+.-+|+.|+.|++++||..+|.++|+++...+..++. +|+.|+||+||||+.||++||++|++
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laq 402 (1266)
T KOG1525|consen 324 IKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQ 402 (1266)
T ss_pred hHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999998887888889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHh-hhhccCCCcchhhcccchHHHhhhhccCCCCc-chHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000441 237 IFRGC-CLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALE 314 (1508)
Q Consensus 237 LY~~~-~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~-~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~ 314 (1508)
+|+.+ |..++.+...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++||++|+++|.+||..+.++|.
T Consensus 403 lYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~ 482 (1266)
T KOG1525|consen 403 LYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFN 482 (1266)
T ss_pred HHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHH
Confidence 99974 44455567788999999999999999998774 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh--hcHHHHHHHHHHhcCC
Q 000441 315 KILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSN 392 (1508)
Q Consensus 315 ~il~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFakl--nD~RiykLLk~~idp~ 392 (1508)
.|+++|.+++.+|+.||.++...+.++ ..+++...|..++..||||..+..+..+|++. .+..+..++..+..+.
T Consensus 483 ~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~ 559 (1266)
T KOG1525|consen 483 EILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPS 559 (1266)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998776543 77888899999999999999999999999873 6778889999999998
Q ss_pred CCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-HHHHHHHHHHHhhccc-------ch--hhhHHHH
Q 000441 393 TSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKSS-------AN--AQFMQSC 458 (1508)
Q Consensus 393 td~ktv~ka~kELlkrL~~----~~~~~d~l~~Ll~RsS~lifNk-s~V~~LL~~~~~~~~~-------~~--~~~~~~a 458 (1508)
..|+++.-.+++++.+++. ++.+..+.+.|+.|..++.+.. +.+..++.....+... ++ .......
T Consensus 560 ~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~ 639 (1266)
T KOG1525|consen 560 ISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLK 639 (1266)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHH
Confidence 8888766555665555554 4557788888999999987777 7777777665432111 11 2334566
Q ss_pred HHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHH
Q 000441 459 MDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYA 536 (1508)
Q Consensus 459 ~eLL~~IS~~~P~lFk~~--v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~A 536 (1508)
..||..+|..+|.+|... +..++..+....+...+.+|+.+-..|+......+.....+...+..+++.|+|.+||+|
T Consensus 640 ~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~ 719 (1266)
T KOG1525|consen 640 KYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLA 719 (1266)
T ss_pred HHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHH
Confidence 789999999999998877 577777777766667888999999888655555666677889999999999999999999
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHhhhcc-----CCCchHHHHHHHHHhhcccccc-cchHHHHHHHHHhhhccCCccC
Q 000441 537 VHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFE-TRESEIEEFIKSKILRCSNKIR 610 (1508)
Q Consensus 537 VriLaa~~~~~~~~~~~~L~~~Lv~~L~~~-----s~l~t~LasL~~Ia~~aP~vfe-~~~~eI~~fiik~ILl~~~~~~ 610 (1508)
++|+.++...+.. .+...+..+.+.+.+. .++.+.+.+||+|+.+.|..|- .....+..||++++++.++.++
T Consensus 720 ~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~ 798 (1266)
T KOG1525|consen 720 KRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPG 798 (1266)
T ss_pred hhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccc
Confidence 9999988876532 2344566666665433 4999999999999999995554 4577899999999988888877
Q ss_pred CC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccccc--hhHHHHHHHHHhh-ccCCCccCCCCChhhhhhhhH
Q 000441 611 ND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHIRP--GIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRL 682 (1508)
Q Consensus 611 ~~-~~~~W~d~----se~~~aKi~aLK~Lvn~ll~~~~~~~~~--~~~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLRL 682 (1508)
+. ....|+.. +..+.+|+.|++++++||++...+.-+. .+...+.+|..++ +.|++..+..+|..++++||+
T Consensus 799 e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~ 878 (1266)
T KOG1525|consen 799 EKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRL 878 (1266)
T ss_pred cccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhh
Confidence 65 56778763 4468889999999999999987642111 1112566777764 699999998999999999999
Q ss_pred HHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHhhhhcCCCCCchHHH-H
Q 000441 683 ASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE-K 759 (1508)
Q Consensus 683 ~Aa~~lLKLa~~--~d~~i~~~~f~ll~l~~qD~~~~VR~~Fl~KL~k~L~~~~Lp~ry~al~fl~a~a~ep~e~~e~-K 759 (1508)
.|+.++||||.. +..++++++|..+++.++|++++||..|+.||++++...+||.-|++.|+|++.+... ...+ +
T Consensus 879 ~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~--~~~~~~ 956 (1266)
T KOG1525|consen 879 TAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSK--ELLANK 956 (1266)
T ss_pred hhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhh--hhhhHH
Confidence 999999999986 6788999999999999999999999999999999999999999999999996533211 1111 1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCcchhHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHhhccCccc
Q 000441 760 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV 839 (1508)
Q Consensus 760 ~~l~~~I~~~~~~~~R~~s~~s~~~~~~~~pEy~LprLIhLLAHH~~Pd~~~~~d~~~l~~~~ryL~F~L~~L~~~~e~~ 839 (1508)
....+-.-.-++.......+.++ ......|||+.+|.+|+|||| |+|...++++.|..+..++||.++.|..+.
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~-~~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSD-GTLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCc-hhhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence 11111110000000111111111 125688999999999999999 999998899999999999999999996542
Q ss_pred cccccccccHH--HHHHHHHHhhcccccccc---ccccchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCC
Q 000441 840 KSEASNKESIS--VIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 913 (1508)
Q Consensus 840 ~~~~~~~eNiS--lLy~la~rVKq~rDa~d~---~~S~nly~LcDLAq~IIk~~aq-k~w~lq~yPGkV~LPs~lF~p~~ 913 (1508)
+|+. +.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+..||..+|.++.
T Consensus 1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 3332 333444556677787643 3456899999999999998885 78999999999999999999886
Q ss_pred CCCccccccccccccccch
Q 000441 914 KKEGDDSLASERQTWLADE 932 (1508)
Q Consensus 914 s~e~~ea~~i~~k~yLpde 932 (1508)
+. + -+..++|+|++
T Consensus 1104 ~k----n-~~~~k~~i~e~ 1117 (1266)
T KOG1525|consen 1104 DK----N-FINNKIYIPEE 1117 (1266)
T ss_pred hh----h-hccccccCCch
Confidence 42 2 34689999999
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.7e-12 Score=164.70 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=77.5
Q ss_pred hhhHHhhhccCcCCCccccccCchhhhccCCCchhhhhhhhhcccccccCccccccCCCCCCCCcccccchhhHHHHhhc
Q 000441 972 GKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKR 1051 (1508)
Q Consensus 972 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1508)
+....+.--++.+-..++.++.+++| ||+.|.+++++++.-+..++.++.+|+|.+....+.+-..-....-.+
T Consensus 982 ~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~ke~~~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~ 1055 (1266)
T KOG1525|consen 982 LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLKECLWFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPD 1055 (1266)
T ss_pred hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHHHhHHHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCc
Confidence 55566667777788888999998888 999999999999999999999999999987755544322111222223
Q ss_pred cCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000441 1052 KATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1082 (1508)
Q Consensus 1052 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1508)
.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1056 d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1056 DVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred ccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 4444444 678888888888877777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.93 E-value=1.7e-09 Score=93.65 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=36.5
Q ss_pred ccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeee
Q 000441 1209 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1252 (1508)
Q Consensus 1209 ~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~ 1252 (1508)
-+|.+|.+|||++..||+|.|++||+.++.|+|.|+||++..|.
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 48999999999999999999999999999999999999995443
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.87 E-value=1.8e-05 Score=102.56 Aligned_cols=391 Identities=12% Similarity=0.054 Sum_probs=215.9
Q ss_pred hcccCCChHHHHHHHH-HHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHH
Q 000441 99 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 177 (1508)
Q Consensus 99 ~EL~aed~~~RllAT~-lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L 177 (1508)
.+|.+.+...|..|.+ +++-|.-+. +...-|+++-+.+- =.+..+|..+--++..+...+|+ .+--.+..|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~~----S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLAP----STDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHhC----CCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 4445666666666665 677776543 56666666666443 33678888877777666555663 233557999
Q ss_pred HHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhccc
Q 000441 178 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 257 (1508)
Q Consensus 178 ~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 257 (1508)
.+=|.|+++-||.-|+.++|.+....+ -+.++..|..-+.|+.+-||+.|.-++++||+..- ......+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~i---~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSSV---LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 999999999999999999888655432 22345666777899999999999999999999642 11223456
Q ss_pred chHHHhhhhccCCCCcchHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000441 258 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 337 (1508)
Q Consensus 258 IPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e~~ 337 (1508)
+|. +..+..+.|+. .-...+..++.- .+..-..+ .+ ....+.+++.. .
T Consensus 181 ~~~-L~~LL~D~dp~--------------------Vv~nAl~aL~eI-~~~~~~~l-~l------~~~~~~~Ll~~---L 228 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--------------------VASNAAAIVCEV-NDYGSEKI-ES------SNEWVNRLVYH---L 228 (746)
T ss_pred HHH-HHHHhcCCCcc--------------------HHHHHHHHHHHH-HHhCchhh-HH------HHHHHHHHHHH---h
Confidence 653 44443333322 111111111100 00000000 00 01111222221 1
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000441 338 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 415 (1508)
Q Consensus 338 n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~idp~td~ktv~ka~kELlkrL~~~~~--~ 415 (1508)
++-+ +=.+- .+++.|+..-|+. -.+....+..++.+|+..++ +
T Consensus 229 ~e~~-EW~Qi---~IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 229 PECN-EWGQL---YILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred hcCC-hHHHH---HHHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 1111 11111 2334444433321 11122334445555555433 5
Q ss_pred HHHHHHHHHhhhccccChHHHHHHHHHHHhh----cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccc
Q 000441 416 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ----KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEII 491 (1508)
Q Consensus 416 ~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~----~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~ 491 (1508)
++.++.+++-..+. +.+.+..++..+... ..+.+ ...-.+++-|..|...+|.+|..|...+.-...|.+ .+
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~-eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yI 349 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDA-ETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FV 349 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCc-cHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HH
Confidence 66666665443322 444444444332210 01111 223456677888999999999988655533333322 46
Q ss_pred hHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhccC-CCc
Q 000441 492 KEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLP 570 (1508)
Q Consensus 492 ~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~L~~~s-~l~ 570 (1508)
....|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-+-. ..+..++..|++-+..+. ...
T Consensus 350 K~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~~cV~~Ll~ll~~~~~~v~ 422 (746)
T PTZ00429 350 KLEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAPDCANLLLQIVDRRPELLP 422 (746)
T ss_pred HHHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCchhHH
Confidence 77789999887632 11 13466778889988889999999999887664321 234445566655554332 223
Q ss_pred hHHHHHHHHHhhccc
Q 000441 571 AVLQSLGCIAQTAMP 585 (1508)
Q Consensus 571 t~LasL~~Ia~~aP~ 585 (1508)
..+.++-.|.+..|.
T Consensus 423 e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 423 QVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHCcc
Confidence 345566666666664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.0001 Score=96.10 Aligned_cols=506 Identities=15% Similarity=0.152 Sum_probs=285.5
Q ss_pred chhHHHHHHHHHhhCchhhhhhhhhhhhccc-CCChHHHHHHHHHHHHHhcCCCCchhh-h----cHHHHHHHHhhhcCC
Q 000441 72 HIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNE-Q----FHSVFSEFLKRLTDR 145 (1508)
Q Consensus 72 ~~kaHeLI~eL~~~~P~lL~sVIPqLe~EL~-aed~~~RllAT~lLG~Mfs~~gs~fa~-~----y~~~w~~fL~R~~Dk 145 (1508)
...+-+.+-.+|+--| ++|.|.+-+. +.++++|.+|--++-+++...-..+.. . -.++...++ .-.
T Consensus 21 r~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~---~E~ 92 (1075)
T KOG2171|consen 21 RRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQ---SET 92 (1075)
T ss_pred HHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---hcc
Confidence 4457888888999988 7778888777 779999999999988888764222221 1 123334444 347
Q ss_pred ChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHhccC
Q 000441 146 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDK 222 (1508)
Q Consensus 146 s~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs---~elL~~LaeR~RDK 222 (1508)
.+.||.+....+..|-.+--. +.-.+++..|..+.+++++..|-.|+-.+..+...--.... .+++..+.+-|-|-
T Consensus 93 ~~~vr~k~~dviAeia~~~l~-e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~ 171 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLP-EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP 171 (1075)
T ss_pred chHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC
Confidence 889999999988887776422 14578999999999999999999999999887663332222 37778888999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhccCCCcchhhc-ccchHHHhhhhccCCCCcchHHHHhhccCcCCCCCHHHHHHHHHHH
Q 000441 223 SVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRI 301 (1508)
Q Consensus 223 K~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~-~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R~~rll~l 301 (1508)
...||-.|.++++.+.... +++......| .-+|+-|.-+-- + ++.. .....-.
T Consensus 172 s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~-----------~-----i~~~-----d~~~a~~- 225 (1075)
T KOG2171|consen 172 SSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE-----------V-----IQDG-----DDDAAKS- 225 (1075)
T ss_pred cchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh-----------h-----hhcc-----chHHHHH-
Confidence 9999999999999876532 1222333333 445555432210 0 0000 0000001
Q ss_pred HhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhc--CCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhc
Q 000441 302 FSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQMHQ--DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKD 378 (1508)
Q Consensus 302 ~~~LD~~a~kaf~~il~~q~~-l~~~~~~yL~l~e~~n--~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD 378 (1508)
..++|..|+..-.+ ++..+...|++|-+.- ..-++.+....-.+|-+++.+-| .-.++.+.+-+
T Consensus 226 -------~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap------~~~k~~~~~~~ 292 (1075)
T KOG2171|consen 226 -------ALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP------AMCKKLALLGH 292 (1075)
T ss_pred -------HHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH------HHhhhchhhhc
Confidence 11223333332222 3334445555554322 22223344334445555555422 22233333333
Q ss_pred HHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChHHHHHHHH
Q 000441 379 ANVWKILMNLLDSNTS-----------------FDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILL 441 (1508)
Q Consensus 379 ~RiykLLk~~idp~td-----------------~ktv~ka~kELlkrL~~~~~~~d~l~~Ll~RsS~lifNks~V~~LL~ 441 (1508)
+=+-.+|.-+++-+.| +.-+..+++.+-..|+.+ --++-++.
T Consensus 293 ~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---------------------~v~p~~~~ 351 (1075)
T KOG2171|consen 293 TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---------------------QVLPPLFE 351 (1075)
T ss_pred cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---------------------hehHHHHH
Confidence 3334444444433333 333333444444444433 22233333
Q ss_pred HHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHH----HhhccccchHHHHHHHHHhhcchhhhhhcccc-h
Q 000441 442 EVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNL----LKEENEIIKEGILHVLAKAGGTIREQLAATSS-S 516 (1508)
Q Consensus 442 ~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~l----L~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s-~ 516 (1508)
.+..-..+.+-.....|+--|-.|+.=|+.+..++..+++.+ |.|..|.+.-.+|.++.+++..+...+..... .
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 322211122213344556666778888888888887666655 44445677778899998776544322211111 1
Q ss_pred HHHHH-HHHhhcCCHHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHhhh-ccC--CCchHHHHHHHHHhhcccccc
Q 000441 517 VDLLL-ERLCLEGSRRQAKYAVHALAAITKDDG----LKSLSVLYKRLVDMLE-EKT--HLPAVLQSLGCIAQTAMPVFE 588 (1508)
Q Consensus 517 l~~~L-~~lal~GtP~qAK~AVriLaa~~~~~~----~~~~~~L~~~Lv~~L~-~~s--~l~t~LasL~~Ia~~aP~vfe 588 (1508)
+.+.| ..+-..++|+.-.||+.+|....-.-. ..++..|++..+..|. .++ -....+++||.+|.-+-..|.
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence 12122 223334678888899999875543211 1244555554444444 333 344578899999999999999
Q ss_pred cchHHHHHHHHHhhhccCCccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCcccccchhHHHHHHHHH
Q 000441 589 TRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKS 659 (1508)
Q Consensus 589 ~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~~~~ll~lL~~ 659 (1508)
.+-+.++.++. ++|..... ++-...+.|. +.++.-.-++...+.+.+.+..++.+|-.
T Consensus 512 pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~ 569 (1075)
T KOG2171|consen 512 PYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLE 569 (1075)
T ss_pred hHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHh
Confidence 99899998875 45544321 1122333343 44443333333333567777778887754
No 6
>PTZ00429 beta-adaptin; Provisional
Probab=98.52 E-value=0.00013 Score=94.95 Aligned_cols=343 Identities=14% Similarity=0.087 Sum_probs=193.3
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 154 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wV 154 (1508)
.|--+..+-+..|++..-++..|...|...|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+
T Consensus 88 vYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 88 VYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred HHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 35555566777899999999999999999999999999999996543 233345666666677899999999999
Q ss_pred HHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 000441 155 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 234 (1508)
Q Consensus 155 e~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~L 234 (1508)
=++.++...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....... +... ...+
T Consensus 162 lai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-----l~l~---------------~~~~ 221 (746)
T PTZ00429 162 MGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-----IESS---------------NEWV 221 (746)
T ss_pred HHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-----hHHH---------------HHHH
Confidence 9999999888864333457788888899999999999999998875543221 1100 1111
Q ss_pred HHHHHHhhhhccCCCcchhhcccchHHHhhhhccCCCCc-chHHHHhhccCcCC--CCCHHHHH---HHHHHHHhcCCHH
Q 000441 235 ADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPT--GFSVKDRV---RHWVRIFSGFDRI 308 (1508)
Q Consensus 235 a~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~-~lVE~vL~e~LlP~--~~~~~~R~---~rll~l~~~LD~~ 308 (1508)
-+|+... .++=.|..-.||+++..-.+.+ .-.+.+ .+.++|. ..++..-. +.++.+....++.
T Consensus 222 ~~Ll~~L----------~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 222 NRLVYHL----------PECNEWGQLYILELLAAQRPSDKESAETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHh----------hcCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 1122211 1123688888888874322221 111111 2223332 22332222 2222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHH
Q 000441 309 EMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNL 388 (1508)
Q Consensus 309 a~kaf~~il~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~ 388 (1508)
.. +.-+.+.-.-++.+. . ..++++=-.-..|..|...+|.-.. .++..|+ |
T Consensus 291 ~~---------~~~~~rl~~pLv~L~---s--s~~eiqyvaLr~I~~i~~~~P~lf~--~~~~~Ff-------------~ 341 (746)
T PTZ00429 291 LI---------ERCTVRVNTALLTLS---R--RDAETQYIVCKNIHALLVIFPNLLR--TNLDSFY-------------V 341 (746)
T ss_pred HH---------HHHHHHHHHHHHHhh---C--CCccHHHHHHHHHHHHHHHCHHHHH--HHHHhhh-------------c
Confidence 00 011111112233331 1 2234543334445566665553221 1233332 1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh
Q 000441 389 LDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARF 468 (1508)
Q Consensus 389 idp~td~ktv~ka~kELlkrL~~~~~~~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~ 468 (1508)
.-.+.+| ++...=+++-+ +.|.++|..|++.+.....+-+......+..-+..++..
T Consensus 342 ~~~Dp~y--IK~~KLeIL~~---------------------Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 342 RYSDPPF--VKLEKLRLLLK---------------------LVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred ccCCcHH--HHHHHHHHHHH---------------------HcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 1112222 22222233333 345566666666665543333335666677777788889
Q ss_pred CCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchh
Q 000441 469 SPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIR 507 (1508)
Q Consensus 469 ~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~ 507 (1508)
+|.....++..|+++|....+ .+..++-++..+-.++|
T Consensus 399 ~~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP 436 (746)
T PTZ00429 399 VDSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYP 436 (746)
T ss_pred ChHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCc
Confidence 999999999999999976444 34456666655544444
No 7
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=0.019 Score=75.79 Aligned_cols=442 Identities=16% Similarity=0.158 Sum_probs=223.4
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCC--CCc---hhhhcHH-HHHHHHhhhcCCChh
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSA---NNEQFHS-VFSEFLKRLTDRIVA 148 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~--gs~---fa~~y~~-~w~~fL~R~~Dks~~ 148 (1508)
.-..+.+|-..+|.++..=+.+|-.-|..+.-..|-..++.+|.|-..- +.. .+..-+. +-..+..|+.|+++-
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~ 374 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAY 374 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4578899999999999998888888899999999999999999997542 111 1222222 344555566666666
Q ss_pred HHHHHHHHhHHhHhcCCC-CCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHH
Q 000441 149 VRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 227 (1508)
Q Consensus 149 VR~~wVe~~~~IL~~~p~-~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR 227 (1508)
||..+++-...|..-|.- ..-.++++.....||.|----||..|++-+..+--+++ --+
T Consensus 375 vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P--------------------fs~ 434 (1251)
T KOG0414|consen 375 VRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP--------------------FSS 434 (1251)
T ss_pred HHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC--------------------chh
Confidence 666655555544433321 01123444444444444444444444444333222211 111
Q ss_pred HHHHHHHHHHHHHhhhhccC--CCcc-----------hhhcccchHHHhhhhc--cCCCC---cchHHHHhhccCcCCCC
Q 000441 228 RYTMERLADIFRGCCLRNFN--GSIN-----------QNEFEWIPGKILRCLY--DKDFG---SDTIESVLCGSLFPTGF 289 (1508)
Q Consensus 228 ~eAm~~La~LY~~~~~~~~~--~~~~-----------~~~~~wIPskIL~~~Y--~nD~e---~~lVE~vL~e~LlP~~~ 289 (1508)
+.-..-+...|..+....+. .+.. ..-+.|+=...=..+. .+..+ +..-|+.
T Consensus 435 ~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~---------- 504 (1251)
T KOG0414|consen 435 ELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC---------- 504 (1251)
T ss_pred hhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhhh----------
Confidence 11111112222222222211 1100 0011222111000000 00000 0011111
Q ss_pred CHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHhhhcCCch
Q 000441 290 SVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSRSFAEPA 364 (1508)
Q Consensus 290 ~~~~R~~rll~l~~~LD~~----a~kaf~~il~~q~~l~~~~~~yL~l~-e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~ 364 (1508)
.+..-....+.. ..+++.+++....++.+.|.+-+... +..-++...+|+.-|... .+|..| +-.
T Consensus 505 -------~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~~F-~I~ 574 (1251)
T KOG0414|consen 505 -------LLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCKQF-GID 574 (1251)
T ss_pred -------hhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHh-CCC
Confidence 111111111111 12344444444445555555444332 112234555666555433 234445 445
Q ss_pred hHHHHHHHHHhh---hcHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcCC-----CchHHHHHHHHHhhhcc
Q 000441 365 KAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGAK-----HRLYDFLSTLSMKCSYL 429 (1508)
Q Consensus 365 Ka~e~L~kFakl---nD~RiykLLk~~-------idp~td~ktv~ka~kELlkrL~~~-----~~~~d~l~~Ll~RsS~l 429 (1508)
-|+.++++...| +|..++.++..| .+++..-.+.....+-|++.+-+. +++-+.+..|.. --
T Consensus 575 gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~---~~ 651 (1251)
T KOG0414|consen 575 GAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA---RG 651 (1251)
T ss_pred cHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh---CC
Confidence 566777776664 676666666555 334445444433333444433322 223233333332 44
Q ss_pred ccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhh-cchhh
Q 000441 430 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG-GTIRE 508 (1508)
Q Consensus 430 ifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~-k~~~e 508 (1508)
-|+..-|..|.....-...+.......-++.+|-++|...|++-..+.+.|+.+=.. .|..+..+|+.++.++ .++++
T Consensus 652 ~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~~~r~~~ 730 (1251)
T KOG0414|consen 652 YIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIVDPRKLE 730 (1251)
T ss_pred CccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhhcccccc
Confidence 678888888887763333332211123467899999999999999998887655222 3667788899888665 22221
Q ss_pred --------hhhcccchHHHHHHHHhhcCC-------HHHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000441 509 --------QLAATSSSVDLLLERLCLEGS-------RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 562 (1508)
Q Consensus 509 --------~~~~~~s~l~~~L~~lal~Gt-------P~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~ 562 (1508)
+++ ....+...|..+-.+|= -.-|-.|+.+|..+...++ .....|+..+.++
T Consensus 731 ~~~~r~~f~~~-~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe-~la~~li~~~~~~ 797 (1251)
T KOG0414|consen 731 DAYSRPKFNLE-QEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPE-VLATQLIRKLLKQ 797 (1251)
T ss_pred hhhccccccCc-hHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHH
Confidence 122 23467888888877752 2567788888888877664 2334455555554
No 8
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=0.021 Score=76.74 Aligned_cols=163 Identities=20% Similarity=0.221 Sum_probs=131.7
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhc---ccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHH
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 151 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~E---L~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~ 151 (1508)
.-.+|+..-...-++.++.=|+|-.- |..+.+.+|..|.+.|..|...+. ..-.+|..=..--+|++|-+.+||-
T Consensus 796 ~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVRE 873 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVRE 873 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHH
Confidence 34555555555556666655555443 335679999999999999998764 5788999999999999999999999
Q ss_pred HHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcC--CCCCHHHHHHHHHHhccCChhHHHH
Q 000441 152 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL--NSIPVETVKLVAERLRDKSVLVKRY 229 (1508)
Q Consensus 152 ~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l--~~Vs~elL~~LaeR~RDKK~~VR~e 229 (1508)
+.|+.++.+++.+|+ ...+.-+.+..|..|+---||.-|++.++++....+ ..+ .++...+.-|+-|=--.|.+-
T Consensus 874 AaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~~cakmlrRv~DEEg~I~kL 950 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VDMCAKMLRRVNDEEGNIKKL 950 (1692)
T ss_pred HHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HHHHHHHHHHhccchhHHHHH
Confidence 999999999999985 466888999999999999999999999999876544 333 355666778999998889999
Q ss_pred HHHHHHHHHHHhh
Q 000441 230 TMERLADIFRGCC 242 (1508)
Q Consensus 230 Am~~La~LY~~~~ 242 (1508)
+.+.+-++|-.=+
T Consensus 951 v~etf~klWF~p~ 963 (1692)
T KOG1020|consen 951 VRETFLKLWFTPV 963 (1692)
T ss_pred HHHHHHHHhccCC
Confidence 9999999987544
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.24 E-value=0.00068 Score=84.99 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 154 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wV 154 (1508)
.|-.+-.++...|+++.-++..|...|.++|+.+|-+|.+++|.+-.. .++ +.+...-..-.+|.++.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~---~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA---EPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH---HHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh---hHHHHHHHHHhcCCchHHHHHHH
Confidence 577888899999999999999999999999999999999999996621 233 45666666667799999999999
Q ss_pred HHhHHhHhcCCCCCChHH-HHHHHHHhhcCCchHHHHHHHHHHHHh
Q 000441 155 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 199 (1508)
Q Consensus 155 e~~~~IL~~~p~~~~~~e-Ii~~L~~rL~D~DEkVR~aaVkaI~~l 199 (1508)
-++.+|....|+. ... +++.|...|.|+|..|+.+|+.+++.+
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999988863 334 789999999999999999999999988
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.06 E-value=0.0036 Score=78.62 Aligned_cols=239 Identities=12% Similarity=0.139 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCccccHHHHHHHHh-hccccchHHHHHHHHHhhcchhhhhhc
Q 000441 435 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTEEELVNLLK-EENEIIKEGILHVLAKAGGTIREQLAA 512 (1508)
Q Consensus 435 ~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~v~~L~~lL~-~~n~~~~e~~LkaLa~~~k~~~e~~~~ 512 (1508)
.+..|+..+.. . +. ...-.+.+.|..|+..+ |.+| +..-....+. +++..+...+|.+|...+.. ++
T Consensus 268 ~~~~L~~lL~s-~-~~--nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n--- 336 (526)
T PF01602_consen 268 AINPLIKLLSS-S-DP--NVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SN--- 336 (526)
T ss_dssp HHHHHHHHHTS-S-SH--HHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HH---
T ss_pred hHHHHHHHhhc-c-cc--hhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc--cc---
Confidence 45555555531 1 11 23345778888999999 6666 3333344555 66667788889999887642 11
Q ss_pred ccchHHHHHHHHhh-cCCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcc-C-CCchHHHHHHHHHhhccccccc
Q 000441 513 TSSSVDLLLERLCL-EGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEK-T-HLPAVLQSLGCIAQTAMPVFET 589 (1508)
Q Consensus 513 ~~s~l~~~L~~lal-~GtP~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~L~~~-s-~l~t~LasL~~Ia~~aP~vfe~ 589 (1508)
-..+...|.+++. .+++.-.+.+++.|..+..... ......++.+++-+..+ . -....+..|..+....|...+
T Consensus 337 -~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~-~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~- 413 (526)
T PF01602_consen 337 -VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP-PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELRE- 413 (526)
T ss_dssp -HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG-SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHH-
T ss_pred -hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC-chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhH-
Confidence 1246777888884 4467777788888776554321 22334566666666533 2 333345555566555554432
Q ss_pred chHHHHHHHHHhhhccCCccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCcccccchhHHHHHHHHHhhccCCCccC
Q 000441 590 RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSED 669 (1508)
Q Consensus 590 ~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~~~~ll~lL~~il~~GEl~~~ 669 (1508)
.++..+++-+-. . ..++ ++..++-++..+.--..+ .. .+..+++.|... . .
T Consensus 414 ---~~l~~L~~~l~~-~------------~~~~---~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~--~---~-- 464 (526)
T PF01602_consen 414 ---KILKKLIELLED-I------------SSPE---ALAAAIWILGEYGELIEN--TE-SAPDILRSLIEN--F---I-- 464 (526)
T ss_dssp ---HHHHHHHHHHTS-S------------SSHH---HHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHH--H---T--
T ss_pred ---HHHHHHHHHHHH-h------------hHHH---HHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHh--h---c--
Confidence 234444432211 0 0111 222233333322211111 11 233333333221 1 1
Q ss_pred CCCChhhhhhhhHHHHHHHHHhhhccC-CCCCHHHHHHHhhccc--CCchhHHHH
Q 000441 670 IESSSVDKAHLRLASAKAVLRLSRQWD-HKIPVDVFHLTLRTPE--ISFPQAKKL 721 (1508)
Q Consensus 670 ~~tp~~~ksrLRL~Aa~~lLKLa~~~d-~~i~~~~f~ll~l~~q--D~~~~VR~~ 721 (1508)
..-...|+.+-.++.|+..... ....+.+...+..... +..++||.+
T Consensus 465 -----~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 465 -----EESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 1224589999999999997643 3444456665554444 668888876
No 11
>PRK09687 putative lyase; Provisional
Probab=97.75 E-value=0.00024 Score=82.99 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=105.0
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000441 76 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 154 (1508)
Q Consensus 76 HeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R-~~Dks~~VR~~wV 154 (1508)
+..+..|..+-.. .|++.+..-|.+++..+|..|+..||+| +.++... +.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~----~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQ----DNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccch----HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4455556555532 2444444556789999999999999985 4333211 2233333322 4899999999999
Q ss_pred HHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 000441 155 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 234 (1508)
Q Consensus 155 e~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~L 234 (1508)
...+++-...+.. ...++..|...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999863322211 2367788889999999999999999987643 355678888999999999999999999
Q ss_pred HHH
Q 000441 235 ADI 237 (1508)
Q Consensus 235 a~L 237 (1508)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 12
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.018 Score=73.18 Aligned_cols=392 Identities=14% Similarity=0.157 Sum_probs=207.0
Q ss_pred hcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHH
Q 000441 99 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 178 (1508)
Q Consensus 99 ~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~ 178 (1508)
.-|.+.....-+.|.+-|=-|++. |-+...-||++- +-..-++++|+..+-=+.-+.-..+|...+ -=+..++
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~-G~dvS~~Fp~VV----KNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQ 114 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAK-GKDVSLLFPAVV----KNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQ 114 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhc-CCcHHHHHHHHH----HHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHH
Confidence 335677777778888766556654 445554445554 445556888887765555554456665322 2268999
Q ss_pred HhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccc
Q 000441 179 DRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 258 (1508)
Q Consensus 179 ~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wI 258 (1508)
+-|.||..-+|.-|..++.++-... |-+=+|.++.+-++|-.+-||+.|..++-+||..-.. ...++..+
T Consensus 115 k~L~DpN~LiRasALRvlSsIRvp~---IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-------~k~qL~e~ 184 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIRVPM---IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-------QKDQLEEV 184 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcchhh---HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-------hHHHHHHH
Confidence 9999999999999999887754433 3334577999999999999999999999999985321 11122222
Q ss_pred hHHHhhhhccCCCCcchHHHHh--hccCcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000441 259 PGKILRCLYDKDFGSDTIESVL--CGSLFPTGFSVK-DRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQ 335 (1508)
Q Consensus 259 PskIL~~~Y~nD~e~~lVE~vL--~e~LlP~~~~~~-~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e 335 (1508)
=.++| .++++ ..|-.++ |+.+-|-.++-- .--+++++++-.+|+.+.-.+..|+
T Consensus 185 I~~LL---aD~sp--lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL------------------ 241 (968)
T KOG1060|consen 185 IKKLL---ADRSP--LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINML------------------ 241 (968)
T ss_pred HHHHh---cCCCC--cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHH------------------
Confidence 22222 12222 1111111 222222111100 1235555666666665444444333
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH-hhhcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 000441 336 MHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD-QLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR 414 (1508)
Q Consensus 336 ~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFa-klnD~RiykLLk~~idp~td~ktv~ka~kELlkrL~~~~~ 414 (1508)
++|--..||+|+.....++.=. .-|....|.-+++=+..+.|.+-+.+.++=|+. +.++
T Consensus 242 -----------------~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~---S~n~ 301 (968)
T KOG1060|consen 242 -----------------TRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ---SRNP 301 (968)
T ss_pred -----------------HHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh---cCCc
Confidence 2333344555543322222100 011111122222222235566555555554442 3333
Q ss_pred -hHHHHHHHHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc-ch
Q 000441 415 -LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IK 492 (1508)
Q Consensus 415 -~~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~-~~ 492 (1508)
+.-.+-.++|-.+|.-=+.--+..|+..+++.... ....+.-+..||...|.+|..|.+..- +...++. +.
T Consensus 302 sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~v-----qyvvL~nIa~~s~~~~~lF~P~lKsFf--v~ssDp~~vk 374 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREV-----QYVVLQNIATISIKRPTLFEPHLKSFF--VRSSDPTQVK 374 (968)
T ss_pred HHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcc-----hhhhHHHHHHHHhcchhhhhhhhhceE--eecCCHHHHH
Confidence 33334446666666655555577777766553221 123334455788888999999976543 2333442 22
Q ss_pred HHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhh
Q 000441 493 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE 564 (1508)
Q Consensus 493 e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~L~ 564 (1508)
-.=|++|+.++.. ..-+.+..-|+.|....+..-|--||.+|......-. ....-.++.|+..|.
T Consensus 375 ~lKleiLs~La~e------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-sv~~tCL~gLv~Lls 439 (968)
T KOG1060|consen 375 ILKLEILSNLANE------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-SVTDTCLNGLVQLLS 439 (968)
T ss_pred HHHHHHHHHHhhh------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHHh
Confidence 3345566655421 0112344445566665566667777777764443322 111223455555554
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.54 E-value=0.4 Score=62.59 Aligned_cols=586 Identities=15% Similarity=0.162 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC--CCCC-CCCchh-HHHHHHHHHhhCchhhhhhhhhhhhcccCC----C
Q 000441 34 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--DSRP-GHSHID-YHEVIYDVYRCSPQILSGVVPYLTGELLTD----Q 105 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~--d~~~-~~~~~k-aHeLI~eL~~~~P~lL~sVIPqLe~EL~ae----d 105 (1508)
.++.+-.++++..++-+..++-.....|++. |... +.-.+. .--|+.-|--+.|++..+-+|-|-.-+.+- =
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 8899999999999999888887766776652 2111 111222 334555566778888777766654433311 1
Q ss_pred hHHHHHHHHHHHH---Hhc--CC--CCchhhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHhHhcCCC--CCChHHHH
Q 000441 106 LDTRLKAVGLVGD---LFA--VP--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 174 (1508)
Q Consensus 106 ~~~RllAT~lLG~---Mfs--~~--gs~fa~~y~~~w~~fL~R~--~Dks~~VR~~wVe~~~~IL~~~p~--~~~~~eIi 174 (1508)
-.+--.|..+.++ .+- .+ +.++......+|.+-|.|+ +|.+-+||...+.+.++++.+--+ +.+..-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 2222223333333 332 11 2355566678888888876 799999999999999999987542 23445677
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHhhhhcC--C--CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000441 175 TALCDRLLDFDENVRKQVVAVICDVACHAL--N--SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 250 (1508)
Q Consensus 175 ~~L~~rL~D~DEkVR~aaVkaI~~la~~~l--~--~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 250 (1508)
..|.+||. .|--|++||+|++.++...+ + .+-.+++..|+.=+|--....|.+++..+-+|-..|...+.. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~ 690 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-EL 690 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 88888985 57889999999999987554 3 344577888888888777788888888888888877422110 01
Q ss_pred chhhcccchHHHhhhhccCCCCcchHHHHhhccCc--CCCCCHHHHH---HHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Q 000441 251 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRV---RHWVRIFSG--FDRIEMKALEKILEQKQRL 323 (1508)
Q Consensus 251 ~~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~Ll--P~~~~~~~R~---~rll~l~~~--LD~~a~kaf~~il~~q~~l 323 (1508)
....+.-||+-|- ..|.+....-..+..+++ |...-...+- .-++.++++ |-..+..++..++..-..-
T Consensus 691 ~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 691 LEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 1222444544442 223321111111122222 1111011111 112222211 1222222222211100000
Q ss_pred HH-HHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHhhhcCCchhH--HHHHHHHH--hhhcH-HHHHHHHH--
Q 000441 324 QQ-EMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMN-- 387 (1508)
Q Consensus 324 ~~-~~~~yL~l~e~~n--------~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka--~e~L~kFa--klnD~-RiykLLk~-- 387 (1508)
+. .+. |..+-.... +|-....--.|.+|+..|+..+|+-.++ ..-.+.|. +.+|+ ++|-+|..
T Consensus 767 ~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 767 KEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred CCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 00 011 333321111 1112222235788888999999965554 33334444 24443 44444332
Q ss_pred ----------------Hhc-CCCCHHHHHHHHHHHHHHhcCCC-c-------------------hHHHHHHHHHhhhccc
Q 000441 388 ----------------LLD-SNTSFDQAFTGRDDLLKILGAKH-R-------------------LYDFLSTLSMKCSYLL 430 (1508)
Q Consensus 388 ----------------~id-p~td~ktv~ka~kELlkrL~~~~-~-------------------~~d~l~~Ll~RsS~li 430 (1508)
++. -++...++..|-.-.|-.|...+ + ++--++.++-+++.-.
T Consensus 846 lgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~ 925 (1233)
T KOG1824|consen 846 LGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDG 925 (1233)
T ss_pred hccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccch
Confidence 111 13344445555555555554321 0 1112444555666553
Q ss_pred cChHHHHHHHHHHHhhc---ccchhhhHHHHHHHHHHHHhhCCc------------------------------------
Q 000441 431 FNKEHVKEILLEVAAQK---SSANAQFMQSCMDILGILARFSPL------------------------------------ 471 (1508)
Q Consensus 431 fNks~V~~LL~~~~~~~---~~~~~~~~~~a~eLL~~IS~~~P~------------------------------------ 471 (1508)
+ ++.|.-|+..+-... .++.....+.|+..|. .+.|+
T Consensus 926 ~-~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~i 1001 (1233)
T KOG1824|consen 926 L-KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPI 1001 (1233)
T ss_pred h-hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCcc
Confidence 3 556777777663321 1222223334443332 11221
Q ss_pred --CccccHHHHHHHHhhccccchHHHHHHHHHhhcchhh--------hhhc--ccchHHHHHHHHhhcCCH--------H
Q 000441 472 --LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE--------QLAA--TSSSVDLLLERLCLEGSR--------R 531 (1508)
Q Consensus 472 --lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e--------~~~~--~~s~l~~~L~~lal~GtP--------~ 531 (1508)
+.+.+++...+++.+.+..+...+|.++..++..-|. -+|. ...++...|.+-...|+- -
T Consensus 1002 d~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd 1081 (1233)
T KOG1824|consen 1002 DPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLD 1081 (1233)
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHH
Confidence 1223455666777777777888899999887755332 2221 122344445555666742 4
Q ss_pred HHHHHHHHHHhhcCCCc-cchHHHHHHHHHHhhhccC--CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccCCc
Q 000441 532 QAKYAVHALAAITKDDG-LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 608 (1508)
Q Consensus 532 qAK~AVriLaa~~~~~~-~~~~~~L~~~Lv~~L~~~s--~l~t~LasL~~Ia~~aP~vfe~~~~eI~~fiik~ILl~~~~ 608 (1508)
+=|.|.-|+..+.+.-. .......++-+..+|+... .++++ -.|+-+|-++|.....+-+.|++=+-+.+-..+..
T Consensus 1082 ~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~DhydiKmlt~-l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~ 1160 (1233)
T KOG1824|consen 1082 LRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDHYDIKMLTF-LMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKA 1160 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccc
Confidence 55788888876665321 1223344555555565332 44453 35788888899988888888887776655443322
Q ss_pred cCCCCCCCCCCchhhHHHHHHHHHHHHHh
Q 000441 609 IRNDTKACWDDRSELCLLKIYGIKTLVKS 637 (1508)
Q Consensus 609 ~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ 637 (1508)
.. - -.+.+....+|-.|||++.-.
T Consensus 1161 ~s--v---KqE~ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1161 NS--V---KQEFEKQDELKRSALRAVAAL 1184 (1233)
T ss_pred ch--H---hHhHHHHHHHHHHHHHHHHHH
Confidence 11 0 012233455677788876654
No 14
>PRK09687 putative lyase; Provisional
Probab=97.47 E-value=0.00099 Score=77.88 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=101.7
Q ss_pred hhhhhhhhhhc-ccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCC
Q 000441 90 LSGVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 168 (1508)
Q Consensus 90 L~sVIPqLe~E-L~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~ 168 (1508)
...++|.|..- +...+..+|..|+..||.+-.. +... -+.+...+..-..|.++.||...+.+.+.| .
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~--- 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKK-NPLY---SPKIVEQSQITAFDKSTNVRFAVAFALSVI----N--- 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cccc---chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C---
Confidence 34567777765 5567899999999999998432 2111 234555666778899999999999998653 1
Q ss_pred ChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 169 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 169 ~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
..+.++.|...|.|+|..||..|+.+++.+... +...+..|...+.|....||..|+.+||++
T Consensus 157 -~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 157 -DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD-----NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred -CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 136889999999999999999999999987322 446677788889999999999999999984
No 15
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.17 Score=64.13 Aligned_cols=136 Identities=22% Similarity=0.284 Sum_probs=98.6
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCC
Q 000441 90 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 169 (1508)
Q Consensus 90 L~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~ 169 (1508)
+...+-+|=--+.+.+-.+|-...++|..+....+.-=-..|.-+-...+.|..|+.|.||++.|-+..++- -.|- ++
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ-~d~~-de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ-GDPK-DE 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh-cCCC-CC
Confidence 333333443445578999999999999999874321112334455568899999999999999999987743 2332 33
Q ss_pred hHHHHHHHHHh-hcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441 170 APQILTALCDR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 170 ~~eIi~~L~~r-L~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
.-.+...|..- -+||.+.||.+|.-.| .++.+++=.+.||+||=+..+|+-+-..+..
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI---------~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNI---------SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhh---------ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 44677666665 4999999999977665 4577788888999999999999977555543
No 16
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.37 E-value=0.15 Score=69.15 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=126.1
Q ss_pred hHHHHHHHHHhhhcCCCCCCCC-chhHHHHHHHHHhhCchhhhh--hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCc
Q 000441 50 LEAGIKQFLVSSMSGDSRPGHS-HIDYHEVIYDVYRCSPQILSG--VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 126 (1508)
Q Consensus 50 Lq~~I~qyF~~vi~~d~~~~~~-~~kaHeLI~eL~~~~P~lL~s--VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~ 126 (1508)
+.+..--|++-+|..-+.+.-. ..+|...+-.|-.+.|.+|.. |--+++..+.-....+|-.|+.+||+-+...
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--- 886 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--- 886 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc---
Confidence 3334444555554432222222 347899999999999999987 8888899999999999999999999988653
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCC
Q 000441 127 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 206 (1508)
Q Consensus 127 fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~ 206 (1508)
.+.++..|..-..|..|..+.||--+++-...|....|......+++..+..|..|-+..|-.-|++++..+.+...+.
T Consensus 887 -~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 887 -PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred -HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 3456778999999999999999999999999999999988888899999999999999999999999999999977654
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.25 E-value=1.4 Score=57.83 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=113.8
Q ss_pred HHHHHHHHHhhCc----hhhhhhhhhhhhcc---cCCChHHHHHHHHHHHHHhcCCCCchhhhc----------------
Q 000441 75 YHEVIYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGSANNEQF---------------- 131 (1508)
Q Consensus 75 aHeLI~eL~~~~P----~lL~sVIPqLe~EL---~aed~~~RllAT~lLG~Mfs~~gs~fa~~y---------------- 131 (1508)
.-.+|-+|-+.+= .-+..++|.|.+.. ..++.++|....+.++-.+--..-++...-
T Consensus 233 ~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 233 YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 3444444444432 33566888888888 888999999999999865532111000000
Q ss_pred ------HHHHHHHHh------------hhcCCChhHHHHHHHHhHHhHhcCCCC--CChHHHHHHHHHhhcCCchHHHHH
Q 000441 132 ------HSVFSEFLK------------RLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQ 191 (1508)
Q Consensus 132 ------~~~w~~fL~------------R~~Dks~~VR~~wVe~~~~IL~~~p~~--~~~~eIi~~L~~rL~D~DEkVR~a 191 (1508)
-+.=..|+. -=-|.+=.||.+..+++-.++.++++. ..-+.+-..|..|+.|-+|.|+..
T Consensus 313 y~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~d 392 (1233)
T KOG1824|consen 313 YNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKAD 392 (1233)
T ss_pred CCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHH
Confidence 111112222 223556689999999999999988642 223455578889999999999999
Q ss_pred HHHHHHHhhhhcCC---------------------CCCH---HHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhh
Q 000441 192 VVAVICDVACHALN---------------------SIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 243 (1508)
Q Consensus 192 aVkaI~~la~~~l~---------------------~Vs~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 243 (1508)
+..++-.+-..... .++. -+.+.++.-+|+|+..-|.-|+..|..+-+++-+
T Consensus 393 vf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 393 VFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG 468 (1233)
T ss_pred HHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc
Confidence 99999876543321 1111 2346889999999999999999999999988743
No 18
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.47 Score=61.00 Aligned_cols=182 Identities=13% Similarity=0.040 Sum_probs=128.9
Q ss_pred HHHHHHhhhcCCCCCCCCchh-HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcH
Q 000441 54 IKQFLVSSMSGDSRPGHSHID-YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH 132 (1508)
Q Consensus 54 I~qyF~~vi~~d~~~~~~~~k-aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~ 132 (1508)
++.||-+|+.+-....-+..+ .|--+.+-..--|++-+--|-.+.--|...|.-+|--|.+++..|= +..--|
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHH
Confidence 778888877543111113334 4666666778889998888889999999999999999999987552 333346
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 000441 133 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 212 (1508)
Q Consensus 133 ~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL 212 (1508)
-...+--+-..|.+|-||-...-+++.+..-.|+. -.+|++.+..-|.|.+..|==+||.|+..+....+..+-.. .
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-y 219 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-Y 219 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-H
Confidence 66777778889999999999999999988877753 34899999999999999999999999999877777655443 1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHhhhh
Q 000441 213 KLVAERLRDKSVLVKRYTMERLADIFRGCCLR 244 (1508)
Q Consensus 213 ~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~ 244 (1508)
+.+..-+.|=.-==....|..|.+.-++++.+
T Consensus 220 rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 220 RKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 22222222222111234566666655555443
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.13 E-value=0.029 Score=61.30 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChh
Q 000441 146 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 225 (1508)
Q Consensus 146 s~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~ 225 (1508)
.|.||.-++-+.+++...+|. .....++.|..+|.|+++.||..|+.++..+...++..+.+.++..+..-+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999999885 345678899999999999999999999999999998888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000441 226 VKRYTMERLADIFRGC 241 (1508)
Q Consensus 226 VR~eAm~~La~LY~~~ 241 (1508)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.043 Score=68.73 Aligned_cols=367 Identities=17% Similarity=0.194 Sum_probs=209.1
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHH--
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 152 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~-- 152 (1508)
+-+++-.+|+- ++|.-++|.|.+-|.+++=-+|-.++=.||-|--+=-.-|...-|.+.--++.-..||.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 45666666653 67788999999999999999999999999977654212245555788888888999999999975
Q ss_pred H--HHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc-CCCCCH--HHHHH---HHHHhccCCh
Q 000441 153 V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKL---VAERLRDKSV 224 (1508)
Q Consensus 153 w--Ve~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~-l~~Vs~--elL~~---LaeR~RDKK~ 224 (1508)
| -.+++.++.-+++ .--..++.+|..|++|..-+|--|||.++..+.-.+ -..||. .+|.+ ....-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 3 3566666655432 234467889999999999999999999999887654 345553 22222 2233445666
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHh--hhhccCCCCc-------chHHHHhhccCcCCCCCHHHHH
Q 000441 225 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKIL--RCLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 295 (1508)
Q Consensus 225 ~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL--~~~Y~nD~e~-------~lVE~vL~e~LlP~~~~~~~R~ 295 (1508)
.|==.||-+||.--..+..+..- ++. -||--|= +.+-+.|.+. ..|-..|-..++|+--++=.|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~Y----iqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAY----IQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHH----HHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 67777888888766655432110 000 0222221 1111223331 2466677788889887877887
Q ss_pred HHHHHHH--h--c--CCHH----H----HHHHHHHHHHHHHHHH---------HHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 000441 296 RHWVRIF--S--G--FDRI----E----MKALEKILEQKQRLQQ---------EMQRYLSLRQMHQDGDAPEIQKKILFC 352 (1508)
Q Consensus 296 ~rll~l~--~--~--LD~~----a----~kaf~~il~~q~~l~~---------~~~~yL~l~e~~n~gd~~ei~~kL~~~ 352 (1508)
-++++=+ . . -|+. . .-+|--+.+.-..+-. -+...+-.|- ++ ..+++.+---..
T Consensus 609 ~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~--~D-~~peVRQS~FAL 685 (885)
T KOG2023|consen 609 FRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL--QD-EVPEVRQSAFAL 685 (885)
T ss_pred HHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh--cc-CChHHHHHHHHH
Confidence 7777511 0 0 0000 0 0011111111111111 1222222221 22 456665443333
Q ss_pred HHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccc
Q 000441 353 FRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLL 430 (1508)
Q Consensus 353 I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~idp~--td~ktv~ka~kELlkrL~~~~~~~d~l~~Ll~RsS~li 430 (1508)
+--|++++++..+. ++. .++.+|-.-.+|+ +-+..+.-|+-|+--+++.+. ..++++++++.-. +
T Consensus 686 LGDltk~c~~~v~p--~~~--------~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-i 752 (885)
T KOG2023|consen 686 LGDLTKACFEHVIP--NLA--------DFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-I 752 (885)
T ss_pred HHHHHHHHHHhccc--hHH--------HHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-H
Confidence 33444444333332 122 2233333334443 345566677888888888653 3567777666543 3
Q ss_pred cChHHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000441 431 FNKEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 481 (1508)
Q Consensus 431 fNks~V~-~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~ 481 (1508)
+|+.+.+ +|++- .|. -+-.+..++|+++..|.+..+
T Consensus 753 in~~~~~~tllEN--------------tAI-TIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 753 INRQNTPKTLLEN--------------TAI-TIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred hcccCchHHHHHh--------------hhh-hhhhhhccCHHhcchhHHHHH
Confidence 3444444 33321 111 123467899999999976554
No 21
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.02 E-value=0.0013 Score=58.20 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=39.9
Q ss_pred ccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEccC-CcceeeecC
Q 000441 1209 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1254 (1508)
Q Consensus 1209 ~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1254 (1508)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999988 999988753
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=1.4 Score=55.95 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCchhhhhh
Q 000441 17 EDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGV 93 (1508)
Q Consensus 17 ~~vLDvIL~qf~~~ks---~~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~lL~sV 93 (1508)
+++|..+...|..... .+|+.---.||+..++.+++.+..-+-++ .
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~-------------------------------m 175 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNI-------------------------------M 175 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHH-------------------------------h
Confidence 5667766666654331 27777777788888776665443111111 2
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC--CChH
Q 000441 94 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAP 171 (1508)
Q Consensus 94 IPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~--~~~~ 171 (1508)
||-+=.-.++..+.+|..|+..+-..+-.....+.-.-..-.....-+.+|-++.||..+..+...+|..+|++ ....
T Consensus 176 ipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~ 255 (885)
T KOG2023|consen 176 IPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD 255 (885)
T ss_pred HHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH
Confidence 33333345667999999999999988765443332222222223445779999999999999999999988753 2235
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHA 203 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~ 203 (1508)
.|++++..+-.|+||.|-++||...-.+|...
T Consensus 256 ~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 256 NIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 79999999999999999999999887776543
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=1 Score=56.40 Aligned_cols=416 Identities=16% Similarity=0.142 Sum_probs=230.2
Q ss_pred HHHHHHHHh-hhhhHHHHHHHHHhhhcCCCCCC--CCch----hHHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHH
Q 000441 38 LAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPG--HSHI----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 110 (1508)
Q Consensus 38 LA~~Ic~~~-~dkLq~~I~qyF~~vi~~d~~~~--~~~~----kaHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~Rl 110 (1508)
+.+++.+.+ .++|...|.+.-++.++...... .-++ -++-|=.+--.+.-.++..|++. +...|..+|-
T Consensus 27 ~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vRy 102 (675)
T KOG0212|consen 27 LVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVRY 102 (675)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceeee
Confidence 344444333 36777777777777766322111 1111 12333333223334445555555 4457899999
Q ss_pred HHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchH
Q 000441 111 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 187 (1508)
Q Consensus 111 lAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~w---Ve~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEk 187 (1508)
-|.+.+-.+--.-...+..-++.+|....+=+.|.+..||-.. -..++.|.......-...+++.-|.+|+.+.+..
T Consensus 103 yACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~ 182 (675)
T KOG0212|consen 103 YACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPM 182 (675)
T ss_pred HhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCch
Confidence 9999987776543446778889999999999999999999652 3344455444432333568999999999999999
Q ss_pred HHHHHHHHHHHhhhh-cCCCC--CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccC-C-----Cc--------
Q 000441 188 VRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SI-------- 250 (1508)
Q Consensus 188 VR~aaVkaI~~la~~-~l~~V--s~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~-~-----~~-------- 250 (1508)
+|..+|.-|.-+... .+.-+ -.+++--|-.=+-|-...||.-+=+.|+.+-+....+.+. + +.
T Consensus 183 tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss 262 (675)
T KOG0212|consen 183 TRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS 262 (675)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC
Confidence 999999998876542 22222 2355666667778999999999999999988876543322 0 00
Q ss_pred --c--hhhcccchHHHhhhhccCCCCcchHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHHHH
Q 000441 251 --N--QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEKIL 317 (1508)
Q Consensus 251 --~--~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R----~~rll~--l~~~LD~~a~k---af~~il 317 (1508)
. ...+.||-.-| ++........-.-+++.++|.-.+.+.- ....+. +.+-.+....+ .+..
T Consensus 263 ~~~iq~~al~Wi~efV----~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~-- 336 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFV----KIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS-- 336 (675)
T ss_pred cHHHHHHHHHHHHHHh----cCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH--
Confidence 0 11355653221 2222221111222356788874433221 222222 22222221111 0111
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh---hhcCCchhHHH--HHHHHH-hhhc---H---HHHHHH
Q 000441 318 EQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEE--NFLILD-QLKD---A---NVWKIL 385 (1508)
Q Consensus 318 ~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls---~~fPDp~Ka~e--~L~kFa-klnD---~---RiykLL 385 (1508)
+-.++++|+.- +. +.++|. +.+||. ..+|...-... -+..+- .|-| . +..-++
T Consensus 337 -----ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 337 -----IIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred -----HHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 11122233321 11 122221 334443 33343322211 111111 1211 1 112233
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 000441 386 MNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGIL 465 (1508)
Q Consensus 386 k~~idp~td~ktv~ka~kELlkrL~~~~~~~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~I 465 (1508)
..++....++ -.++....|+.+..+..-+.+.--+|+.|.-++..|.++|=.-|..+-.. ..+..++...-+.|+.|
T Consensus 402 a~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~i 478 (675)
T KOG0212|consen 402 ASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNTI 478 (675)
T ss_pred HHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHhh
Confidence 3333333332 22455566666666655566667778999999999999997766554332 33446777788899999
Q ss_pred HhhCCcCccccHHHHHHHHhh
Q 000441 466 ARFSPLLLGGTEEELVNLLKE 486 (1508)
Q Consensus 466 S~~~P~lFk~~v~~L~~lL~~ 486 (1508)
--+.|++|. |.+.|.+
T Consensus 479 LlTStELf~-----LR~~Lk~ 494 (675)
T KOG0212|consen 479 LLTSTELFQ-----LRNKLKD 494 (675)
T ss_pred hcccHHHHH-----HHHHHHh
Confidence 999999985 5555554
No 24
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.88 E-value=0.13 Score=63.77 Aligned_cols=256 Identities=17% Similarity=0.177 Sum_probs=152.6
Q ss_pred hcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHH
Q 000441 99 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 178 (1508)
Q Consensus 99 ~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~ 178 (1508)
--+.+.+-.+|....++|+.+--..+--=-.-|..+-...++|.-|..+.||++.|.+.-++-.- +.++...+...|.
T Consensus 98 Rg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~--~~neen~~~n~l~ 175 (885)
T COG5218 98 RGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM--ELNEENRIVNLLK 175 (885)
T ss_pred hcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cCChHHHHHHHHH
Confidence 33557899999999999998765433101233456667889999999999999999988764421 2344556666555
Q ss_pred Hh-hcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhccc
Q 000441 179 DR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 257 (1508)
Q Consensus 179 ~r-L~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 257 (1508)
.- -+||-..||.+|.--| .|+.+++-.+.||.||=....|+- +|....+++.+ -++..
T Consensus 176 ~~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~ls 234 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLS 234 (885)
T ss_pred HHHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhcc
Confidence 54 4899999999966443 457777888899999999888874 45554444321 23445
Q ss_pred chHHHhhhhc-cCCCC----cchHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHH--HHH
Q 000441 258 IPGKILRCLY-DKDFG----SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQRL--QQE 326 (1508)
Q Consensus 258 IPskIL~~~Y-~nD~e----~~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~----a~kaf~~il~~q~~l--~~~ 326 (1508)
|--+|+-.=+ .+|-+ ..++|.+....+.|... +++.++..||-. .++|+..++..+.-. +..
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~-------~lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~e 307 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDL-------RLVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKE 307 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccc-------cHHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhh
Confidence 5555552212 23322 34788888888888874 344555555532 233333333222110 111
Q ss_pred HHHHH--HHHhhhcCCCcHHH-HHH----HHHHHHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHHh
Q 000441 327 MQRYL--SLRQMHQDGDAPEI-QKK----ILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL 389 (1508)
Q Consensus 327 ~~~yL--~l~e~~n~gd~~ei-~~k----L~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~i 389 (1508)
+-.|+ ++-++ ..-. .+- |..-|.-|-.-||+..+..+.+..|..+.++..|+.+-+++
T Consensus 308 FPe~~w~d~T~E-----~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfiI 372 (885)
T COG5218 308 FPEYLWSDPTEE-----NTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFII 372 (885)
T ss_pred cHHHHhhCchHH-----HHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHHH
Confidence 11111 11100 0000 001 11113333344999999999999898888888666655544
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.87 E-value=0.007 Score=57.38 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=67.3
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 000441 138 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 216 (1508)
Q Consensus 138 fL~R~-~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~La 216 (1508)
++... +|.++.||...+.+++.+ ...++++.|...|.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 34455 799999999999888732 13478999999999999999999999999874 355677788
Q ss_pred HHhcc-CChhHHHHHHHHHH
Q 000441 217 ERLRD-KSVLVKRYTMERLA 235 (1508)
Q Consensus 217 eR~RD-KK~~VR~eAm~~La 235 (1508)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 88877 45678999999987
No 26
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.26 Score=63.40 Aligned_cols=354 Identities=17% Similarity=0.167 Sum_probs=204.6
Q ss_pred hhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCC
Q 000441 89 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 168 (1508)
Q Consensus 89 lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~ 168 (1508)
+|.=+.-.|-..|++.+--+==+|.-+||.|++. .+++ ++.-.--.-.+-.++.||.+.+-|+-+++..-|+
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-- 175 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-- 175 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--
Confidence 3344455778899999988888999999999975 3443 2322222223336899999999999999998885
Q ss_pred ChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCC
Q 000441 169 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNG 248 (1508)
Q Consensus 169 ~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~ 248 (1508)
..+-++.....+|.|-+.-|=.++|..+.++....+ +.+. +-|| ....|-.+-+.......
T Consensus 176 l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~-----~~l~----~fr~--------l~~~lV~iLk~l~~~~y-- 236 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP-----DALS----YFRD--------LVPSLVKILKQLTNSGY-- 236 (866)
T ss_pred HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH-----HHHH----HHHH--------HHHHHHHHHHHHhcCCC--
Confidence 345667888999999999999998888777655433 2221 1111 12223233232211000
Q ss_pred CcchhhcccchHHHhhhhccCCCCcchHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000441 249 SINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 328 (1508)
Q Consensus 249 ~~~~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~ 328 (1508)
...-.+..||+-.| +.|.-|+|++++.-|+.+...+.-++++-.+
T Consensus 237 -speydv~gi~dPFL----------------------------Qi~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 237 -SPEYDVHGISDPFL----------------------------QIRILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred -CCccCccCCCchHH----------------------------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 00011334443333 3588899999999999888888888765433
Q ss_pred HHHHHHhh-hcCCCcHHHHHHHHHHHHHHhhhcCCch---hHHHHHHHHHhhhcHHHHHH-HHHHhcC-CCCHHHHHHHH
Q 000441 329 RYLSLRQM-HQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWKI-LMNLLDS-NTSFDQAFTGR 402 (1508)
Q Consensus 329 ~yL~l~e~-~n~gd~~ei~~kL~~~I~~Ls~~fPDp~---Ka~e~L~kFaklnD~RiykL-Lk~~idp-~td~ktv~ka~ 402 (1508)
-++. .|-| .+-|-.|++.|....|++. .|-.+|-+|-.-.|.++-+. |..++.. +.|-..|.+=+
T Consensus 282 ----ntdsskN~G-----nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr 352 (866)
T KOG1062|consen 282 ----NTDSSKNAG-----NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR 352 (866)
T ss_pred ----cccccccch-----hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH
Confidence 1111 1222 2345666777766677665 35566777776677776332 3333322 22333333445
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCcccc-HHHHH
Q 000441 403 DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT-EEELV 481 (1508)
Q Consensus 403 kELlkrL~~~~~~~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~-v~~L~ 481 (1508)
.-++-.|.+.-+ .++-=-.=.++.++|-++|..+++. ||.++-.. ++-|++. +..++
T Consensus 353 ~tIleCL~DpD~---SIkrralELs~~lvn~~Nv~~mv~e------------------Ll~fL~~~-d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 353 STILECLKDPDV---SIKRRALELSYALVNESNVRVMVKE------------------LLEFLESS-DEDFKADIASKIA 410 (866)
T ss_pred HHHHHHhcCCcH---HHHHHHHHHHHHHhccccHHHHHHH------------------HHHHHHhc-cHHHHHHHHHHHH
Confidence 556666665421 1111111135667888888877763 34434333 4444443 23333
Q ss_pred HHHhhccc--c-chHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 000441 482 NLLKEENE--I-IKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 542 (1508)
Q Consensus 482 ~lL~~~n~--~-~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa 542 (1508)
.+.+.=.| . -....|++|..+|..+.++ ....|.++..+|.+..-.|+++-|.+
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 33333122 1 2345677777777654443 34456677777777777788887764
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.84 E-value=0.42 Score=68.28 Aligned_cols=150 Identities=21% Similarity=0.186 Sum_probs=91.1
Q ss_pred ccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccccchHHHHHHHHHhhc
Q 000441 430 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGG 504 (1508)
Q Consensus 430 ifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~--lF---k~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k 504 (1508)
++....|+-|+..+..... ....+.|..|........+. ++ .+.+..||++|...+..+++.++.+|+.+..
T Consensus 647 vv~agaIpPLV~LLss~~~---~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 647 LATDEIINPCIKLLTNNTE---AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHcCCHHHHHHHHhcCCh---HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 4445567778877754221 12334444555444333332 12 3457999999999888889999999998865
Q ss_pred chhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccc-hH------HHHHHHHHHhhhccC--CCch--HH
Q 000441 505 TIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK-SL------SVLYKRLVDMLEEKT--HLPA--VL 573 (1508)
Q Consensus 505 ~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~-~~------~~L~~~Lv~~L~~~s--~l~t--~L 573 (1508)
.-...........++.|.++-.+|+++.=++|+.+|+.++...... .+ ...+..|++.|...+ ...+ .|
T Consensus 724 ~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al 803 (2102)
T PLN03200 724 DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL 803 (2102)
T ss_pred CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence 3221111123456899999999999999999999998777543211 01 112445555565222 3333 56
Q ss_pred HHHHHHHhh
Q 000441 574 QSLGCIAQT 582 (1508)
Q Consensus 574 asL~~Ia~~ 582 (1508)
.+|+-+++.
T Consensus 804 ~~l~~l~~~ 812 (2102)
T PLN03200 804 EALALLART 812 (2102)
T ss_pred HHHHHHHhh
Confidence 666666664
No 28
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.76 E-value=0.0028 Score=54.06 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.4
Q ss_pred CCeEEEecCCCCceEEEEEEeecCCCCeeEEEccC-CcceeeecC
Q 000441 1211 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1254 (1508)
Q Consensus 1211 G~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1254 (1508)
|..|-+.|+.|..||.|+|...++ .+.-.|.|.| |..+.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778899987 999988754
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.71 E-value=0.0094 Score=80.27 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=88.3
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHH
Q 000441 93 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 172 (1508)
Q Consensus 93 VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~e 172 (1508)
.++.|-..|..+++.+|..|++.||+.-. +.+...+..-..|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 45667777788999999999999998631 23444555556899999999999998776543221
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 173 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 173 Ii~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
...|...|.|+|+.||.+|+.+++.+.... ...|...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--------~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD--------AALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC--------HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235566678899999999999888764221 12345688999999999999999874
No 30
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.71 E-value=0.0027 Score=57.20 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred ccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEccC
Q 000441 1209 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1245 (1508)
Q Consensus 1209 ~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1245 (1508)
-+|..|.|||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.65 E-value=7.4 Score=56.45 Aligned_cols=445 Identities=15% Similarity=0.123 Sum_probs=221.1
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCC--ch--hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC
Q 000441 91 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS--AN--NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 166 (1508)
Q Consensus 91 ~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs--~f--a~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~ 166 (1508)
..+||.|-.-|.+++..+|..|+.+|+.|-..... .+ .-.-|++... |+ .-+++.|..++.....+-.++.+
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~L-L~---sGs~eaKe~AA~AL~sLS~~~~~ 132 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSL-LK---SGSAEAQKAAAEAIYAVSSGGLS 132 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH-HH---CCCHHHHHHHHHHHHHHHcCcch
Confidence 34788888889999999999999999987654321 01 1223444433 32 33688999999998886654321
Q ss_pred CC------ChHHHHHHHHHhhcCC---chHHHHHHHHHHHHhhhhcCCC----CCHHHHHHHHHHhccCChhHHHHHHHH
Q 000441 167 RA------DAPQILTALCDRLLDF---DENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMER 233 (1508)
Q Consensus 167 ~~------~~~eIi~~L~~rL~D~---DEkVR~aaVkaI~~la~~~l~~----Vs~elL~~LaeR~RDKK~~VR~eAm~~ 233 (1508)
.+ .....++.|...|.+. |.-|+..++.+++.++...-.. +....+..+.+-+.+..+.++.+|...
T Consensus 133 D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~a 212 (2102)
T PLN03200 133 DHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASL 212 (2102)
T ss_pred hhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 00 0123466777777776 3336777778887776543211 222345566777788889999999887
Q ss_pred HHHHHHHhhhhccCCCcchhhcccchHHHhhhhc-cCCCCcchHHHHhhccCcCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 000441 234 LADIFRGCCLRNFNGSINQNEFEWIPGKILRCLY-DKDFGSDTIESVLCGSLFPTGFSVKDRVR-HWVRIFSGFDRIEMK 311 (1508)
Q Consensus 234 La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y-~nD~e~~lVE~vL~e~LlP~~~~~~~R~~-rll~l~~~LD~~a~k 311 (1508)
|+.+-... .++....-..+-||.-+ .++- .++.. .++.+- .|..+.++ +...++
T Consensus 213 La~Lass~----ee~~~aVIeaGaVP~LV-~LL~sg~~~~------------------VRE~AA~AL~nLAs~-s~e~r~ 268 (2102)
T PLN03200 213 LARLMMAF----ESSISKVLDAGAVKQLL-KLLGQGNEVS------------------VRAEAAGALEALSSQ-SKEAKQ 268 (2102)
T ss_pred HHHHHcCC----hHHHHHHHHCCCHHHHH-HHHccCCChH------------------HHHHHHHHHHHHhcC-CHHHHH
Confidence 77662211 11111111234454322 2221 11111 011111 11112221 122111
Q ss_pred H---------HHHHHH-----------HHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhc---CCchhHHH
Q 000441 312 A---------LEKILE-----------QKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSF---AEPAKAEE 368 (1508)
Q Consensus 312 a---------f~~il~-----------~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~f---PDp~Ka~e 368 (1508)
+ |..++. .+.-.+.++..+-.+|... ...|..|+..+ .|.....+
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------------~~ll~~L~~ll~s~rd~~~~ad 336 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------------SALILYLGELSESPRSPAPIAD 336 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------------hhhHHHHHHhhcccchHHHHHH
Confidence 1 111111 0000112222222222100 00111111111 11111112
Q ss_pred HHHHHHhh------hc--------HHH-HHHHHHHhcCCCC--HHHHHHHHHH-------------------HHHHhcCC
Q 000441 369 NFLILDQL------KD--------ANV-WKILMNLLDSNTS--FDQAFTGRDD-------------------LLKILGAK 412 (1508)
Q Consensus 369 ~L~kFakl------nD--------~Ri-ykLLk~~idp~td--~ktv~ka~kE-------------------LlkrL~~~ 412 (1508)
..+.++-+ .+ +.+ +.|.+.|-.++.. +..+..+... |+.-|...
T Consensus 337 a~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~ 416 (2102)
T PLN03200 337 TLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMA 416 (2102)
T ss_pred HHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccC
Confidence 22222111 11 111 2233333333332 2333344322 11111111
Q ss_pred Cc--hHHHHHHHHHhh------hccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCc-----cccHHH
Q 000441 413 HR--LYDFLSTLSMKC------SYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEE 479 (1508)
Q Consensus 413 ~~--~~d~l~~Ll~Rs------S~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lF-----k~~v~~ 479 (1508)
+. ..+.+..|.|=| .-.+.+...|+.|++.+..+. ......|...|..|+..++..= .+-+..
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s----~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS----EQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 11 122333333322 234566667889998886532 1344567788888887776422 244899
Q ss_pred HHHHHhhccccchHHHHHHHHHhhcchhhhhhc--ccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccchHHHHHH
Q 000441 480 LVNLLKEENEIIKEGILHVLAKAGGTIREQLAA--TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYK 557 (1508)
Q Consensus 480 L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~--~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~~~~L~~ 557 (1508)
|+++|...++.+.+.+.-+|.+++.. .++... .....++.|.++=..|+++.=+.|+.+|..+...... +.+.
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~----~~I~ 567 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA----ATIS 567 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch----hHHH
Confidence 99999988778888899999887752 211111 1224456677776778888888999999887654322 2345
Q ss_pred HHHHhhhcc-C-CCchHHHHHHHHHhhcc
Q 000441 558 RLVDMLEEK-T-HLPAVLQSLGCIAQTAM 584 (1508)
Q Consensus 558 ~Lv~~L~~~-s-~l~t~LasL~~Ia~~aP 584 (1508)
.++..|... . .....|.+|+.|.....
T Consensus 568 ~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 568 QLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 666665422 2 22224667777766544
No 32
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.78 Score=59.26 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=94.5
Q ss_pred hhhhhhhcccCCChHHHHHHH-HHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChH
Q 000441 93 VVPYLTGELLTDQLDTRLKAV-GLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 171 (1508)
Q Consensus 93 VIPqLe~EL~aed~~~RllAT-~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~ 171 (1508)
.+|.|-.+|.+.-...|..|+ ++|+.|--+. +++.-||++-++| .=.+.+.-..|=-++...-..+|. .+.
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSslF~dvvk~~----~T~dlelKKlvyLYl~nYa~~~P~--~a~ 85 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSSLFPDVVKCM----QTRDLELKKLVYLYLMNYAKGKPD--LAI 85 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHhhhHHHHhhc----ccCCchHHHHHHHHHHHhhccCch--HHH
Confidence 444555555544445565555 5677777654 4555555555544 334567766677777666667775 344
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
-.+..+..=.-|+++.+|.-|+...|.+-. ..+.+-+..-+..-.+|+.+-||+.|..+++++|...
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 556888888999999999998777655433 3344455667778889999999999999999999854
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.43 E-value=0.015 Score=78.46 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=69.7
Q ss_pred hhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHH
Q 000441 97 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 176 (1508)
Q Consensus 97 Le~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~ 176 (1508)
|-..|..++..+|..|+..||.+= .+ ...+....|-++.||..+++....+-... ...+..
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~-~~------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~ 779 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVD-DV------------ESVAGAATDENREVRIAVAKGLATLGAGG------APAGDA 779 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccc-Cc------------HHHHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHH
Confidence 334677889999999999999851 11 12456677777888877777766542211 123455
Q ss_pred HHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000441 177 LCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 238 (1508)
Q Consensus 177 L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY 238 (1508)
|...+.|.|..||.+|+.+++.+... ..+...|..-+.|..+.||..|+..|+.+-
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCP------PDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 55666777777777777776665332 111122333345555556666666555554
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.32 E-value=0.051 Score=61.05 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=105.6
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHH
Q 000441 94 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 173 (1508)
Q Consensus 94 IPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eI 173 (1508)
++.|...+.+..-.+-..|..+|+.|+..-+..|......+....|+|..|....||.....++..|+.+-+. ...+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHH
Confidence 3455555666667788889999999998767677777788888999999999999999999999988876541 1245
Q ss_pred -HHHHHHhhcCCchHHHHHHHHHHHHhhhhcC---CCCC-----HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 174 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 174 -i~~L~~rL~D~DEkVR~aaVkaI~~la~~~l---~~Vs-----~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
...+..-+.+-...||..++..+..+..... ..+. ..++..+..-+.|.++.||..|-..+..+|..+
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 7888888999999999999999888755433 2222 356789999999999999999999999999976
No 35
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=2.3 Score=53.98 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=137.1
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC---C
Q 000441 132 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---P 208 (1508)
Q Consensus 132 ~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V---s 208 (1508)
.+++-.-|..|.|+...||-+.+.++..|+..-+- .-...++..+..-+.+.-++=-.++|+.++.+++.....+ =
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 34444455566666777777766666555543221 1123455555555555555556666666666665544333 2
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhccCCCC-cchHHHHhhccCcCC
Q 000441 209 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 287 (1508)
Q Consensus 209 ~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e-~~lVE~vL~e~LlP~ 287 (1508)
.+++-.|.+.+-|-|+.||+.++.+|-++=... +++ .+.-|=.++++||-++.-+ ...++.+..+
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN~----dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DNP----DIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----ccH----HHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 355678899999999999999999988765543 111 1333445667776443311 1234444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHH
Q 000441 288 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 367 (1508)
Q Consensus 288 ~~~~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~ 367 (1508)
.+..+.|+.+..-+.-++.|-..- -+..++++...+|.-+++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~e-----------------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLAE-----------------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHhh-----------------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 334555665555444554433221 112355667777888999889998877
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000441 368 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 412 (1508)
Q Consensus 368 e~L~kFaklnD~RiykLLk~~idp~td~ktv~ka~kELlkrL~~~ 412 (1508)
..|..+. +.+...+.+. .|++.. .+.+|.-.+++|+|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 7777665 4555555555 677655 3457788888888864
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=9.2 Score=51.83 Aligned_cols=644 Identities=13% Similarity=0.150 Sum_probs=319.4
Q ss_pred CChHHHHHHHHHHHHhhh----hhHHHHHHHHHhhhcC--CCCCCCCch-hHHHHHHHHHhhC-chhhhhhhhhhhhccc
Q 000441 31 KNDTARRLAMNVIEQCAG----KLEAGIKQFLVSSMSG--DSRPGHSHI-DYHEVIYDVYRCS-PQILSGVVPYLTGELL 102 (1508)
Q Consensus 31 ks~~Ay~LA~~Ic~~~~d----kLq~~I~qyF~~vi~~--d~~~~~~~~-kaHeLI~eL~~~~-P~lL~sVIPqLe~EL~ 102 (1508)
..+.+++||.=++++-.. +|...+++-..+.|.. -..+..+.+ +.-++|-+|.+-. |+-=-.++|.|-+=++
T Consensus 49 ~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~ 128 (1075)
T KOG2171|consen 49 ADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK 128 (1075)
T ss_pred CChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc
Confidence 345666666655555444 4444455444432221 012222333 4556777666542 2212224455566788
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC--------CCChHHHH
Q 000441 103 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--------RADAPQIL 174 (1508)
Q Consensus 103 aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~--------~~~~~eIi 174 (1508)
+.++..|-.|..+|.-+-..-|..+.--++++-.-|..-++|.|..||+.-|++...++.-++. +.....++
T Consensus 129 S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l 208 (1075)
T KOG2171|consen 129 SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLL 208 (1075)
T ss_pred CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHH
Confidence 9999999999999887776666667777788888999999999999999999999999887641 12333455
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHHHhccCC--hhHHHHHHHHHHHHHHHhhhhccCCC
Q 000441 175 TALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKS--VLVKRYTMERLADIFRGCCLRNFNGS 249 (1508)
Q Consensus 175 ~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~---elL~~LaeR~RDKK--~~VR~eAm~~La~LY~~~~~~~~~~~ 249 (1508)
..+...+-+-|+.+=..+.+++.+++-..+..+.. .++...-+=.++|. ..+|.-|++.|..+-..+-..+...+
T Consensus 209 ~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 209 NVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred HHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 56677788889989999999999988777665544 44555555566665 58999999999877665432211110
Q ss_pred cchhhcccchHHHhhhhccCCCCcchH-HHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHH-HH
Q 000441 250 INQNEFEWIPGKILRCLYDKDFGSDTI-ESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI-----EMKALEKILEQK-QR 322 (1508)
Q Consensus 250 ~~~~~~~wIPskIL~~~Y~nD~e~~lV-E~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~-----a~kaf~~il~~q-~~ 322 (1508)
.-...+=-.+|.+.-.-+.++... +-.+.+.- .+.|...-.+.+-++-.+|.++ -+.++.+|+... -+
T Consensus 289 ---~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~--~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 289 ---LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD--EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred ---hhhccHHHHHHHhcCCcccchhhcccccccccc--ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHH
Confidence 111222223333332111000000 00000000 0111111112222333344432 222233322211 11
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHHhcC-CCCHHHHHHH
Q 000441 323 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDS-NTSFDQAFTG 401 (1508)
Q Consensus 323 l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~idp-~td~ktv~ka 401 (1508)
.|.+-.--|.. .-+|-.+.+...|.+++..+..++-||.- |+...--+++.. .+||..
T Consensus 364 ~R~AaL~Als~---i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp--------------rVr~AA~naigQ~stdl~p---- 422 (1075)
T KOG2171|consen 364 ERHAALLALSV---IAEGCSDVMIGNLPKILPIVLNGLNDPHP--------------RVRYAALNAIGQMSTDLQP---- 422 (1075)
T ss_pred HHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHhhcCCCCH--------------HHHHHHHHHHHhhhhhhcH----
Confidence 22211111111 12345566778888888888888877642 222111111111 122221
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhhccccChHHHH-HHHHHHHhhcccchhh-hHHHHHHHHHHHHhhCCcCccccHHH
Q 000441 402 RDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVK-EILLEVAAQKSSANAQ-FMQSCMDILGILARFSPLLLGGTEEE 479 (1508)
Q Consensus 402 ~kELlkrL~~~~~~~d~l~~Ll~RsS~lifNks~V~-~LL~~~~~~~~~~~~~-~~~~a~eLL~~IS~~~P~lFk~~v~~ 479 (1508)
++-|+ . .+-|+ .|+..... .++.. ....|..+++..-..-+..+....+.
T Consensus 423 --~iqk~------------------~-----~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 423 --EIQKK------------------H-----HERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred --HHHHH------------------H-----HHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 00110 0 11122 33332211 12211 12223334433333334455554444
Q ss_pred HHH----HHhh-ccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCC-----HHHHHHHHHHHHhhcCCCcc
Q 000441 480 LVN----LLKE-ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS-----RRQAKYAVHALAAITKDDGL 549 (1508)
Q Consensus 480 L~~----lL~~-~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gt-----P~qAK~AVriLaa~~~~~~~ 549 (1508)
|++ +|.. ..+.+.+.++-+++..+-.-.+.|.+.-..+.+.|+++-..++ +..+|- +-||..+...-+.
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgkt-mEcisli~~AVGk 553 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKT-MECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhH-HHHHHHHHHHhhh
Confidence 443 4444 3456788888888877655455555555567888888777655 344553 4454444322222
Q ss_pred chHHHHHHHHHHhh--------hccCCCch-HHHHHHHHHhhcccccccchHHHHHHHHHhhhccCCcc------CC--C
Q 000441 550 KSLSVLYKRLVDML--------EEKTHLPA-VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKI------RN--D 612 (1508)
Q Consensus 550 ~~~~~L~~~Lv~~L--------~~~s~l~t-~LasL~~Ia~~aP~vfe~~~~eI~~fiik~ILl~~~~~------~~--~ 612 (1508)
..|..+.+.++..+ +..+.+.+ .+++.|-+++.--+-|...-..|+--+++..=..+... ++ .
T Consensus 554 e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~ 633 (1075)
T KOG2171|consen 554 EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQ 633 (1075)
T ss_pred hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhcc
Confidence 22333333333332 11122222 35566666666666666544444333333221111100 00 1
Q ss_pred CCCCCCCc---hh--------hHHHHHHHHHHHHHhhcCCCcccccchhHHHHHHHHHhhccCCCccCCCCChhhhhhhh
Q 000441 613 TKACWDDR---SE--------LCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLR 681 (1508)
Q Consensus 613 ~~~~W~d~---se--------~~~aKi~aLK~Lvn~ll~~~~~~~~~~~~~ll~lL~~il~~GEl~~~~~tp~~~ksrLR 681 (1508)
....|... ++ ....|.-|.-.|+-.....+. .+.|.+..++.+..-++.++ ..--+|
T Consensus 634 ~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~-~F~pYve~v~~l~v~~l~f~-----------fhdgVR 701 (1075)
T KOG2171|consen 634 DLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE-AFAPYVEQVVELMVPLLKFY-----------FHDGVR 701 (1075)
T ss_pred ccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHhh-----------hhhHHH
Confidence 12345221 11 144588888888877766654 45666666666222222221 111266
Q ss_pred HHHHHHHHHhhhccC---CCCCH---HHHH----HHh-hcccCCchhHHHHHHHHHHHhHh---cCCCchhHHH
Q 000441 682 LASAKAVLRLSRQWD---HKIPV---DVFH----LTL-RTPEISFPQAKKLFLSKVHQYVK---DRLLDAKYAC 741 (1508)
Q Consensus 682 L~Aa~~lLKLa~~~d---~~i~~---~~f~----ll~-l~~qD~~~~VR~~Fl~KL~k~L~---~~~Lp~ry~a 741 (1508)
=+|+.+|=.|++... ...+. ..|. .+. -+...+..+|=..+++-+.+.|. .+-|..+++-
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~ 775 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLE 775 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHH
Confidence 677766666555321 11111 1111 112 23455556666666666665553 3445555554
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.03 E-value=0.085 Score=62.32 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC----C-------CC
Q 000441 101 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS----R-------AD 169 (1508)
Q Consensus 101 L~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~----~-------~~ 169 (1508)
+++.+..+|..|++.|| +++--+-.++.+|=.+|...+.+ | ...||+.+++++-+++..|.. . ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 66666667888887777766633 5 999999999999999999851 1 12
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc
Q 000441 170 APQILTALCDRLLDFDENVRKQVVAVICDVACHA 203 (1508)
Q Consensus 170 ~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~ 203 (1508)
...+++.|..-|.+.++.||..||..+|.+-...
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 3468888989998889999999999999976543
No 38
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=5.2 Score=52.11 Aligned_cols=146 Identities=16% Similarity=0.095 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhcCC-CCCCCCchh-HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhh
Q 000441 52 AGIKQFLVSSMSGD-SRPGHSHID-YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 129 (1508)
Q Consensus 52 ~~I~qyF~~vi~~d-~~~~~~~~k-aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~ 129 (1508)
.-++.-|++++.-- ..+. ++.+ .|.-+.-.-..-|++=.-.++.+-..-..++..+|.+|.+++|.+= +..
T Consensus 45 ~DvSslF~dvvk~~~T~dl-elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~------v~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDL-ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR------VDK 117 (734)
T ss_pred cchHhhhHHHHhhcccCCc-hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe------ehH
Confidence 56777888877521 1111 2223 3444444566778888888888888888899999999998888432 222
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcC
Q 000441 130 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 204 (1508)
Q Consensus 130 ~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l 204 (1508)
.-.-++...++-.+|..+.||...+-++..+-.-++..-...-+++.|..-+.|.+.-|=..|+.++..+...+.
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 223467778888889999999888888877666666544455788888888888998888888888888877554
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.93 E-value=1.1 Score=58.56 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=85.1
Q ss_pred HHHHHHhhhcCCCCCCCCchh-HHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcH
Q 000441 54 IKQFLVSSMSGDSRPGHSHID-YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH 132 (1508)
Q Consensus 54 I~qyF~~vi~~d~~~~~~~~k-aHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~ 132 (1508)
++-||.+||-.-.....++.+ .|-=+...-+..|+.-.-.++++-..|+..|+.+|-.|.+++|.| ..+
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~~--------- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RVK--------- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-ChH---------
Confidence 666777766421111113333 354455556677777777777777777777777777777777743 111
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH-H
Q 000441 133 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-T 211 (1508)
Q Consensus 133 ~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e-l 211 (1508)
+....++..+.+++.|+..-||..|+-+|..+-..+.+.++.. .
T Consensus 123 -----------------------------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~ 167 (757)
T COG5096 123 -----------------------------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGL 167 (757)
T ss_pred -----------------------------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccH
Confidence 1122345566666666666666666666666554555555554 5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 212 VKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 212 L~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
...+.+.+.|=.+.|=..|+.+|..++..
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 55556666666666666666666666665
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.92 E-value=2.7 Score=53.54 Aligned_cols=209 Identities=18% Similarity=0.186 Sum_probs=127.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhhHHH-----HHHHHHhhhcCCCCCCCCchh-HHHHHHHHHhh---Cchhh--h
Q 000441 23 LLSALGRNKNDTARRLAMNVIEQCAGKLEAG-----IKQFLVSSMSGDSRPGHSHID-YHEVIYDVYRC---SPQIL--S 91 (1508)
Q Consensus 23 IL~qf~~~ks~~Ay~LA~~Ic~~~~dkLq~~-----I~qyF~~vi~~d~~~~~~~~k-aHeLI~eL~~~---~P~lL--~ 91 (1508)
|+..|... ...-..+++.|+..|.+.+.+. +..|+...|... ...... +-..|..+-+. +-+++ .
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~---~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP---SPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66666544 3355678899999998875543 334444444322 122111 11112222111 12223 3
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHhHhcCCCCCCh
Q 000441 92 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA 170 (1508)
Q Consensus 92 sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dk-s~~VR~~wVe~~~~IL~~~p~~~~~ 170 (1508)
+++|.|-.-|..+|..+-..|.++|..|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 477788888899999999999999999998653 23333333334445555555 7789999999999987766632111
Q ss_pred ---HHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc--CC-CCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441 171 ---PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LN-SIPVETVKLVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 171 ---~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~--l~-~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
+.+++.+...|.+.|.-||+.|+..+.+++... .. .+...++..|...+.+-+..-|-.+|-..|.
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 137778888899999999999999999998822 11 1233455556666555544334444444444
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.87 E-value=0.15 Score=57.30 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=65.3
Q ss_pred hhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC--C---C
Q 000441 95 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---A 168 (1508)
Q Consensus 95 PqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~-w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~--~---~ 168 (1508)
|.|=..+.....-+|..|..+|-.|+..-+ -++.+ ......-.+++++.||..+++++..++...+. . .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 333344455667788888888888876432 12344 44455567888888888888888888887761 1 1
Q ss_pred C--hHHHHHHHHHhhcCCchHHHHHHHHHHHHhhh
Q 000441 169 D--APQILTALCDRLLDFDENVRKQVVAVICDVAC 201 (1508)
Q Consensus 169 ~--~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~ 201 (1508)
. ...+++.|...+.|++..||.+|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 24688999999999999999999999887743
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.83 E-value=0.038 Score=52.36 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=66.1
Q ss_pred hhhhhhcc-cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHH
Q 000441 94 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 172 (1508)
Q Consensus 94 IPqLe~EL-~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~e 172 (1508)
||.|-..| ..++..+|..|+.+||++- .+.+...++.-+.|.++.||.+.+.+++.|= ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHH
Confidence 46666777 7889999999999999331 2355666666669999999999999998751 246
Q ss_pred HHHHHHHhhcCC-chHHHHHHHHHHH
Q 000441 173 ILTALCDRLLDF-DENVRKQVVAVIC 197 (1508)
Q Consensus 173 Ii~~L~~rL~D~-DEkVR~aaVkaI~ 197 (1508)
.+..|...+.|. +..||.+|+.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 788888888775 5567999998874
No 43
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.56 E-value=4.7 Score=53.15 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=103.6
Q ss_pred ccCCChHHHHHHHH-HHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHH
Q 000441 101 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 179 (1508)
Q Consensus 101 L~aed~~~RllAT~-lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~ 179 (1508)
|.+-+...|+.|.+ +|..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|+ ++--.+..+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777777887775 678888764 5888889999999855 788888877777777777883 44455689999
Q ss_pred hhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 180 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 180 rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
=|.|+++.+|..|..+++.+-.. .+-+-++..+.+-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999988888775443 34456678899999999999999999999999974
No 44
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=1.5 Score=55.91 Aligned_cols=230 Identities=16% Similarity=0.159 Sum_probs=147.5
Q ss_pred hhhhhcccCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc----CC
Q 000441 95 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 165 (1508)
Q Consensus 95 PqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa-----~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~----~p 165 (1508)
|-|---|++.|-.+|+-|..++-+.|--.+.+.. +--..-|....+=..|--|.||...++.+-.+..- -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 7778889999999999999999999977665442 22223345555667899999999988887766543 35
Q ss_pred CCCChHHHHHHHHH-hhcCCchHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhh
Q 000441 166 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNS-IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 243 (1508)
Q Consensus 166 ~~~~~~eIi~~L~~-rL~D~DEkVR~aaVkaI~~la~~~l~~-Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 243 (1508)
. ....+++..+.+ .-.|+--.||.+|++.+-.++.....+ +=.-+|..|.--+.|+.-+||..+...|.+|=++-+-
T Consensus 257 ~-~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 P-TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred H-HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 3 234455544444 458999999999999998887765533 2233456788889999999999999999999876532
Q ss_pred hccCCCcchhhcccchHHHhhhhccCCCCc--chHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 000441 244 RNFNGSINQNEFEWIPGKILRCLYDKDFGS--DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILE--- 318 (1508)
Q Consensus 244 ~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~--~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~~il~--- 318 (1508)
+-+.-||--.+-.--..|... .-+-+.++...||..-+.+..-.|-..+. +.+..|-..|++++.
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv-~~n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLV-QMNHAAARRFYQYLHEHT 405 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-ccCHHHHHHHHHHhcccc
Confidence 122334433332222333321 23445556677888765554333333333 334545555555442
Q ss_pred --HHHHHHHHHHHHHHHHh
Q 000441 319 --QKQRLQQEMQRYLSLRQ 335 (1508)
Q Consensus 319 --~q~~l~~~~~~yL~l~e 335 (1508)
.-.++-..++.||..|-
T Consensus 406 ~~~~~~~~hlI~~fln~~~ 424 (1005)
T KOG1949|consen 406 ATNIAKLIHLIRHFLNACI 424 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 22345556666666553
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.62 E-value=0.048 Score=53.79 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=56.7
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchh-hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCC---
Q 000441 93 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA--- 168 (1508)
Q Consensus 93 VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa-~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~--- 168 (1508)
++|.|-.-|...+..+|..|..+|+.|......... -.....+..++.=.+|.++.||..++.+..++....+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677777778888899999999999998876210000 0111344444444445555555555555555444332100
Q ss_pred ChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 169 DAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 169 ~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
....+++.|...|.+.+..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 001134444445555555555555555444
No 46
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=20 Score=45.59 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=118.3
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHh---cCCC
Q 000441 90 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPS 166 (1508)
Q Consensus 90 L~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~---~~p~ 166 (1508)
|...||.|.+.+-.-+...|+-.+.-|--+.+.|+.+|..--|+++.-.+.=..|-+.+||..+=.+...+|. +.|+
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 6779999999999999999999999999999999999999999999999999999999999888877777665 4565
Q ss_pred CCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCC-CC--CHHHHHHHHHHhccCCh-hHHHHHHHH---HHHHHH
Q 000441 167 RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-SI--PVETVKLVAERLRDKSV-LVKRYTMER---LADIFR 239 (1508)
Q Consensus 167 ~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~-~V--s~elL~~LaeR~RDKK~-~VR~eAm~~---La~LY~ 239 (1508)
.-+..++++-|...+.-+++..+.-|+.-|.+|...... .+ -..+|..+..-+-|.-. +++..|... |.++..
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 434568899999999999999999999999888764432 11 22445555566666665 466555433 344444
Q ss_pred Hh
Q 000441 240 GC 241 (1508)
Q Consensus 240 ~~ 241 (1508)
.+
T Consensus 325 ~~ 326 (675)
T KOG0212|consen 325 SE 326 (675)
T ss_pred hh
Confidence 43
No 47
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=1.6 Score=58.63 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=109.1
Q ss_pred hHHHHHHHHH---hhCc--hhhhhhhhhhhhcc----cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcC
Q 000441 74 DYHEVIYDVY---RCSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 144 (1508)
Q Consensus 74 kaHeLI~eL~---~~~P--~lL~sVIPqLe~EL----~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~D 144 (1508)
+.|++|..+- -..| ++|....|.|+.-- ...++.++..||-.||+|.-- ++.|-..|-+++-.-|.+ -
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimek--s 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEK--S 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhc--C
Confidence 4566555432 2334 56666778776644 345699999999999998754 345765554444444443 2
Q ss_pred CChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCCh
Q 000441 145 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 224 (1508)
Q Consensus 145 ks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~ 224 (1508)
.+|-||.-+|=+++++...-|.. ......+|-.||+|.+..||..|+.++..+...+.-.|-+- +..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGq-l~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQ-LSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhccc-HHHHHHHhcCCcH
Confidence 67889999999999999988853 44678999999999999999999999999887776555443 4566777888877
Q ss_pred hHHHHH
Q 000441 225 LVKRYT 230 (1508)
Q Consensus 225 ~VR~eA 230 (1508)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 765443
No 48
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.26 E-value=1 Score=57.26 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000441 76 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 155 (1508)
Q Consensus 76 HeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe 155 (1508)
-..+..|-...|.+.+--+-++..-|.++.-.+|--.++..|.+... |.+ ++ +|++
T Consensus 283 slFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~----~~~----------------d~----qm~e 338 (1128)
T COG5098 283 SLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEH----FKK----------------DG----QMVE 338 (1128)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----Hhc----------------ch----hhHh
Confidence 33444555556666665555555555555555555555555544432 110 00 3333
Q ss_pred HhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC--CHHHHHHHHHHhccCChhHHHHHHHH
Q 000441 156 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--PVETVKLVAERLRDKSVLVKRYTMER 233 (1508)
Q Consensus 156 ~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V--s~elL~~LaeR~RDKK~~VR~eAm~~ 233 (1508)
+.++ -.++++..|.+||.|+-.-+|-.|++++..+--.....+ -.++.+.++.|+-||..-||+.|+..
T Consensus 339 ~~~~---------~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl 409 (1128)
T COG5098 339 HYKQ---------KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKL 409 (1128)
T ss_pred hHHH---------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3332 234678888889999999999888887766543332222 44778888999999999999999999
Q ss_pred HHHHHHHh
Q 000441 234 LADIFRGC 241 (1508)
Q Consensus 234 La~LY~~~ 241 (1508)
+++|.-.+
T Consensus 410 ~SkLL~~H 417 (1128)
T COG5098 410 CSKLLMRH 417 (1128)
T ss_pred HHHHHhcC
Confidence 98876655
No 49
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.09 E-value=23 Score=44.98 Aligned_cols=50 Identities=30% Similarity=0.341 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhh
Q 000441 454 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG 503 (1508)
Q Consensus 454 ~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~ 503 (1508)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTG 368 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTG 368 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcC
Confidence 34578999999999999999998888888888888766666777776666
No 50
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.01 E-value=0.095 Score=53.50 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=35.1
Q ss_pred CccccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceee
Q 000441 1206 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1251 (1508)
Q Consensus 1206 ~~~~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1251 (1508)
+.++||.||---|-.+.-||.|+|+. +....+..|..|||.+..|
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcccee
Confidence 35789999999999777779999999 5777899999999998654
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.95 E-value=0.14 Score=50.96 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC---CHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000441 170 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIF 238 (1508)
Q Consensus 170 ~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V---s~elL~~LaeR~RDKK~~VR~eAm~~La~LY 238 (1508)
..+|++-+..++.|+|.+||..||+++..++...-..+ =.+++..|...+.|-...||..| +.|-++.
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 45788888899999999999999999999876543222 23677889999999999999887 5555543
No 52
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.62 E-value=0.48 Score=60.15 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=116.5
Q ss_pred hhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCC-chhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC
Q 000441 89 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 167 (1508)
Q Consensus 89 lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs-~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~ 167 (1508)
++.+..|.|..-|.+++..+|.+|...||++...++. .-.-..+.++...+.-..|.+..|-...++....+..+.+.
T Consensus 74 l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~- 152 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG- 152 (503)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-
Confidence 4778999999999999999999999999999977542 11124567888889999999999999999999887765432
Q ss_pred CChHHH-----HHHHHHhhcCCchHHHHHHHHHHHHhhhhcCC---C-CCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000441 168 ADAPQI-----LTALCDRLLDFDENVRKQVVAVICDVACHALN---S-IPVETVKLVAERLRDKSVLVKRYTMERLADIF 238 (1508)
Q Consensus 168 ~~~~eI-----i~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~---~-Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY 238 (1508)
...| ...|..-+.-+++.||..+...++.++..+.. . +...+|..+..-+.+.-.-||.-|++.|+.|=
T Consensus 153 --~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 153 --LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELA 230 (503)
T ss_pred --HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 2234 56666666556999999999999999875532 2 23357888888899999999999999998874
Q ss_pred H
Q 000441 239 R 239 (1508)
Q Consensus 239 ~ 239 (1508)
.
T Consensus 231 ~ 231 (503)
T PF10508_consen 231 E 231 (503)
T ss_pred c
Confidence 4
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.53 E-value=0.86 Score=49.88 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=52.6
Q ss_pred HHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000441 79 IYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 158 (1508)
Q Consensus 79 I~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~ 158 (1508)
+-.|..-.|.++-..+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+..
T Consensus 12 l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 12 LGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred HHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666654 355555666666666666666666666666666
Q ss_pred HhHhc
Q 000441 159 SCLLT 163 (1508)
Q Consensus 159 ~IL~~ 163 (1508)
.++..
T Consensus 89 e~~~~ 93 (178)
T PF12717_consen 89 ELLKK 93 (178)
T ss_pred HHHHh
Confidence 66555
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.07 E-value=0.13 Score=40.17 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHhhh
Q 000441 173 ILTALCDRLLDFDENVRKQVVAVICDVAC 201 (1508)
Q Consensus 173 Ii~~L~~rL~D~DEkVR~aaVkaI~~la~ 201 (1508)
|++.|...|.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 56778888999999999999999988764
No 55
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=92.97 E-value=0.057 Score=61.86 Aligned_cols=63 Identities=27% Similarity=0.432 Sum_probs=50.4
Q ss_pred CCCCCCccccCCeEEEecCCCCceEEEEEEeecC-CCCeeEEEccCCc----ceeeec---CcceEEEecC
Q 000441 1201 NAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDED----VEVLRL---DKERWELLDN 1263 (1508)
Q Consensus 1201 ~~~~~~~~~vG~rikV~Wp~D~~~Y~G~V~~y~~-~~~~H~v~YdDGd----~E~l~L---~~e~~~~~~~ 1263 (1508)
-+...++.+||++|..-||++..||.+.|+.|+. ...+|.+.||-.+ .+|++| ..|.++|.+.
T Consensus 152 ~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~ 222 (273)
T KOG4675|consen 152 WGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGG 222 (273)
T ss_pred cccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCC
Confidence 3456677799999999999999999999999555 5557888888665 567776 4788888864
No 56
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.38 Score=61.01 Aligned_cols=119 Identities=23% Similarity=0.191 Sum_probs=91.2
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcH-HHHHHHHhhhc-----CCChhHHHHHHHHhHHhHhc
Q 000441 90 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLT 163 (1508)
Q Consensus 90 L~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~-~~w~~fL~R~~-----Dks~~VR~~wVe~~~~IL~~ 163 (1508)
+.+=.-+|+.-|..+-+.+|.-||..+.++|+. |+.--| .+-...|+... |.+++||++.++.++.+|-+
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC
Confidence 445555677778888999999999999999985 665544 45667777764 67889999999999998876
Q ss_pred CCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhh-h---cCCCCCHHHH
Q 000441 164 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-H---ALNSIPVETV 212 (1508)
Q Consensus 164 ~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~-~---~l~~Vs~elL 212 (1508)
-.+...-..++++|.--|+|.-|+||.|+|..+..+-. + -...+|-+.+
T Consensus 294 p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~ 346 (1005)
T KOG1949|consen 294 PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHI 346 (1005)
T ss_pred ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHH
Confidence 44444456788999999999999999999999887633 2 2345566554
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=40 Score=44.07 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=81.7
Q ss_pred HHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHh
Q 000441 78 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 157 (1508)
Q Consensus 78 LI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~ 157 (1508)
-..+=+...-++|.-..-++--.|.+.++-.=-.|...|.. |..| ++++ ++...-+.=.+---|-||...|-..
T Consensus 95 aa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTp--dLAR---DLa~Dv~tLL~sskpYvRKkAIl~l 168 (877)
T KOG1059|consen 95 AASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTP--DLAR---DLADDVFTLLNSSKPYVRKKAILLL 168 (877)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHhccCccchhhheeccccc-ccCc--hhhH---HHHHHHHHHHhcCchHHHHHHHHHH
Confidence 33344444444555555555556665555555555555542 3333 3453 3444444445567899999999999
Q ss_pred HHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCC
Q 000441 158 KSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 205 (1508)
Q Consensus 158 ~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~ 205 (1508)
-.+.+..|+ -.+.-.+-|.++|-|||..|--|||.+||++|..++.
T Consensus 169 ykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 169 YKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 998888885 2446778999999999999999999999999998874
No 58
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.76 E-value=4.5 Score=53.32 Aligned_cols=178 Identities=19% Similarity=0.175 Sum_probs=97.1
Q ss_pred cccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccc---
Q 000441 474 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK--- 550 (1508)
Q Consensus 474 k~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~--- 550 (1508)
++-+.-|+++|..++..+.-.++..|.+.+=.-..+-......+++.|.++...++...-.-|.++|..++-+.+..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m 368 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM 368 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 44567888998877765444444555444311111111124568889999999898888999999999888776421
Q ss_pred hHHHHHHHHHHhhhccCCCchHHHHHHHHHhhcc--cccccchHHHHHHHHHhhhccCCccCCCCCCCC-------CCch
Q 000441 551 SLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM--PVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDRS 621 (1508)
Q Consensus 551 ~~~~L~~~Lv~~L~~~s~l~t~LasL~~Ia~~aP--~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W-------~d~s 621 (1508)
.-..++..|+.-|....+....|..|.+|..... ..|.. ++.+.++++-++..+.... ....-| ....
T Consensus 369 V~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 369 VSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKRN 445 (708)
T ss_pred HHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHHH
Confidence 1122455666556543332334555555555432 34432 2356777776665432211 100001 0000
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccccchhHHHHHHHHHhh
Q 000441 622 ELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 661 (1508)
Q Consensus 622 e~~~aKi~aLK~Lvn~ll~~~~~~~~~~~~~ll~lL~~il 661 (1508)
....+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 1111133457777777655443 45788998873
No 59
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.62 E-value=0.091 Score=46.01 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhHHhHhcCCC--CCChHHHHHHHHHhhcCCchHHHHHHHHHHHHh
Q 000441 147 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDV 199 (1508)
Q Consensus 147 ~~VR~~wVe~~~~IL~~~p~--~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~l 199 (1508)
+.||...+.+++.+....+. .....+++..|...|.|+++.||.+|+.+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788888887764433331 123447778888888888888888888887653
No 60
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=0.22 Score=66.45 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=92.1
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH
Q 000441 132 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 210 (1508)
Q Consensus 132 ~~~w~-~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e 210 (1508)
..+|. .|+-|+.|+.|.||+.|++.++..+.+-|+--...-.++++.=.|.|-.-.||+..|+++-.+-..+-..-..+
T Consensus 285 ~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~ 364 (1048)
T KOG2011|consen 285 NDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLE 364 (1048)
T ss_pred HHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHH
Confidence 34555 78999999999999999999999888888532333578999999999999999999999998877632221222
Q ss_pred HH--------HHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhccCCCC
Q 000441 211 TV--------KLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 272 (1508)
Q Consensus 211 lL--------~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e 272 (1508)
++ -.++ .||-...||..++..+-.++...+... +. -..|+++.|+-+++
T Consensus 365 lFtsRFK~RIVeMa--drd~~~~Vrav~L~~~~~~~~~g~L~d-------~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 365 LFTSRFKDRIVEMA--DRDRNVSVRAVGLVLCLLLSSSGLLSD-------KD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHhcccccCh-------hH----HHHHHHHHhccCcc
Confidence 21 1333 588999999999998877765443111 11 13457777766655
No 61
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.14 E-value=2.2 Score=55.40 Aligned_cols=139 Identities=16% Similarity=0.233 Sum_probs=85.1
Q ss_pred HHHHHHHHHhh----------Cchhhhhhhhhhhhccc----CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh
Q 000441 75 YHEVIYDVYRC----------SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK 140 (1508)
Q Consensus 75 aHeLI~eL~~~----------~P~lL~sVIPqLe~EL~----aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~ 140 (1508)
+..|++..... .+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.
T Consensus 459 ~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~ 528 (618)
T PF01347_consen 459 LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLP 528 (618)
T ss_dssp HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHT
T ss_pred HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHh
Confidence 45666665555 55666677888887777 55779999999999987 22 223333333
Q ss_pred hhc---CCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCch--HHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 000441 141 RLT---DRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLV 215 (1508)
Q Consensus 141 R~~---Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DE--kVR~aaVkaI~~la~~~l~~Vs~elL~~L 215 (1508)
-.. +.+..||++++.+...+....| ..+.+.|..-+.|..| .||.||+-++-. ..-+..+|..+
T Consensus 529 ~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i 597 (618)
T PF01347_consen 529 YIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRI 597 (618)
T ss_dssp TSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHH
Confidence 333 5599999999999987755444 2455666666666544 399997766533 11355678888
Q ss_pred HHHh-ccCChhHHHHHHHHH
Q 000441 216 AERL-RDKSVLVKRYTMERL 234 (1508)
Q Consensus 216 aeR~-RDKK~~VR~eAm~~L 234 (1508)
+..+ .|+...|+......|
T Consensus 598 ~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 598 AQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHhc
Confidence 8887 677788887665544
No 62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.29 Score=61.80 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.1
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 000441 136 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 215 (1508)
Q Consensus 136 ~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~L 215 (1508)
-+|+-=+.|-=-+||.+.|.....+-.++|.. +..-++.|.+.++|-.+-||+.|+.++-.++.+ -.+..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56666777777899999999999988889975 457889999999999999999999999888887 46788999999
Q ss_pred HHHhccCChhHHHHHHHHHHH
Q 000441 216 AERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 216 aeR~RDKK~~VR~eAm~~La~ 236 (1508)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999988777754
No 63
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.99 E-value=55 Score=44.05 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=56.1
Q ss_pred hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 128 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 128 a~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
++.-..+|+-.-.|..|+.++||...+.....||.-..++ ..-.|+.++..--+|+--.||.+++.++..
T Consensus 467 v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~ 536 (1529)
T KOG0413|consen 467 VKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVS 536 (1529)
T ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhc
Confidence 3444467888888999999999999999999988765443 455888898888899988999888877754
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.94 E-value=9.1 Score=45.39 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCCCchhhhcH--HHHHHHHhh-hcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHH
Q 000441 113 VGLVGDLFAVPGSANNEQFH--SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 189 (1508)
Q Consensus 113 T~lLG~Mfs~~gs~fa~~y~--~~w~~fL~R-~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR 189 (1508)
...++-|+......+..... +++..++-. ..-.++.||..-+++.+-+-+-+. ..+.+-+.-|...+..-++.||
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHH
Confidence 34445555443322222222 666666622 222467999999999987666554 3455656666666644499999
Q ss_pred HHHHHHHHHhhhhc-CCCC---C--------HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 190 KQVVAVICDVACHA-LNSI---P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 190 ~aaVkaI~~la~~~-l~~V---s--------~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
..|+++|+++.... +..+ + ..+++.+..-+.+-...||..|.+++++|+-..
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999987632 2221 2 356677777777778899999999999988654
No 65
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.29 E-value=1.5 Score=43.41 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCC-CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH
Q 000441 132 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 210 (1508)
Q Consensus 132 ~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p-~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e 210 (1508)
..+|+.++.-.+|..++||..-+....+++.++. .......|+..+..-|.|+|.=|=++||++++.++-.. |..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3578999999999999999999999999888765 33445678888899999999999999999999988766 445
Q ss_pred HHHHHHHHhccC
Q 000441 211 TVKLVAERLRDK 222 (1508)
Q Consensus 211 lL~~LaeR~RDK 222 (1508)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 666666665554
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.23 E-value=0.36 Score=47.59 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=72.6
Q ss_pred hhhcCCChhHHHHHHHHhHHhHhcCCCC--C-ChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCC----CCCHHHH
Q 000441 140 KRLTDRIVAVRMSVLEHVKSCLLTDPSR--A-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETV 212 (1508)
Q Consensus 140 ~R~~Dks~~VR~~wVe~~~~IL~~~p~~--~-~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~----~Vs~elL 212 (1508)
.-..|.++.+|...+.+...+-...|.. . ....+++.|...|.|++.+||..++.+++.++..... .+...++
T Consensus 14 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 14 SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 3334555788888888887766554321 0 1125677888889999999999999999999864421 2233467
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHH
Q 000441 213 KLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 213 ~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
..+.+.+.+....||+.|+..|+.|
T Consensus 94 ~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 94 PKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999876
No 67
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=1.5 Score=55.85 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=80.0
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCC
Q 000441 127 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 206 (1508)
Q Consensus 127 fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~ 206 (1508)
+...-..+|+....=++|.++.||...++..-. |. + ...+-+.+..-..+-+.|.++.||.+||+.|.-.+...+-.
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L~-e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-LS-E-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-hc-c-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 333445677766666778888888887776432 11 1 22233455667777899999999999999998887765321
Q ss_pred ---------CCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 207 ---------IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 207 ---------Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
.-+..+..+.+=++|..+.||.+|.+.||.+=++.
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 12356788999999999999999999998776643
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.93 E-value=0.22 Score=43.55 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhhhhcC---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 186 ENVRKQVVAVICDVACHAL---NSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 186 EkVR~aaVkaI~~la~~~l---~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
+.||.+|+.+|+.++.... ...-.+++..|...++|-...||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4799999999998765333 333457788999999999999999999999975
No 69
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.65 E-value=64 Score=41.78 Aligned_cols=350 Identities=16% Similarity=0.169 Sum_probs=149.7
Q ss_pred cccHHHHHHHHhh--ccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccch
Q 000441 474 GGTEEELVNLLKE--ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS 551 (1508)
Q Consensus 474 k~~v~~L~~lL~~--~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~ 551 (1508)
..|+++...+|.- .++.....+-+.+++|.+.|| .....-+..+.+||...+...=+.||+-|-.++++.. ..
T Consensus 19 ~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~ 93 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EH 93 (556)
T ss_dssp GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-
T ss_pred ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HH
Confidence 4555555555554 233344555666667776644 4455678889999999998888999999998888643 22
Q ss_pred HHHHHHHHHHhhhcc--CCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccCCccCCCCCCCCCCchhhHHHHHH
Q 000441 552 LSVLYKRLVDMLEEK--THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIY 629 (1508)
Q Consensus 552 ~~~L~~~Lv~~L~~~--s~l~t~LasL~~Ia~~aP~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~ 629 (1508)
+.-+..-|+..|... ..+..+=.+|.+|.+..|... ..=+.++|+-... + ++ ..+.-
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t-------L~~lf~~i~~~~~--~----------de--~~Re~ 152 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT-------LTGLFSQIESSKS--G----------DE--QVRER 152 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHH---H--S-----------H--HHHHH
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH-------HHHHHHHHHhccc--C----------ch--HHHHH
Confidence 223344444444322 244444468888888887533 1122333432110 0 11 23455
Q ss_pred HHHHHHHhhcCCCcccccc--hhH-HHHHHHHHhhccCCCccCCCCChhhhhhhhHHHHHHHHHhhhccCCCCCHHHHHH
Q 000441 630 GIKTLVKSYLPVKDAHIRP--GID-DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHL 706 (1508)
Q Consensus 630 aLK~Lvn~ll~~~~~~~~~--~~~-~ll~lL~~il~~GEl~~~~~tp~~~ksrLRL~Aa~~lLKLa~~~d~~i~~~~f~l 706 (1508)
+|++|...+.++..+...+ .+. -++..+..++. +++ .....| ...+|+-.++|...-|+.-...
T Consensus 153 ~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~--DVT---------aeEF~l--~m~lL~~lk~~~~~~t~~g~qe 219 (556)
T PF05918_consen 153 ALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ--DVT---------AEEFEL--FMSLLKSLKIYGGKQTIEGRQE 219 (556)
T ss_dssp HHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT--T-----------HHHHHH--HHHHHHTSGG---GSSHHHHHH
T ss_pred HHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH--hcc---------HHHHHH--HHHHHHhCccccccCChHHHHH
Confidence 7777777777665543332 111 12222222221 111 011111 1133333333322212211111
Q ss_pred Hh-h-----------cccCCchhHHHHHHHHHHHh---HhcCCCchhHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHH
Q 000441 707 TL-R-----------TPEISFPQAKKLFLSKVHQY---VKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQ 771 (1508)
Q Consensus 707 l~-l-----------~~qD~~~~VR~~Fl~KL~k~---L~~~~Lp~ry~al~fl~a~a~ep~e~~e~K~~l~~~I~~~~~ 771 (1508)
++ + -..| .+.=.+|+..+... ...+-=+.+|+.++.--++..-....++.|-++...+. .
T Consensus 220 Lv~ii~eQa~Ld~~f~~sD--~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lA---E 294 (556)
T PF05918_consen 220 LVDIIEEQADLDQPFDPSD--PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLA---E 294 (556)
T ss_dssp HHHHHHHHHTTTS---SSS--HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHH---H
T ss_pred HHHHHHHHhccCCCCCCcC--HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHH---H
Confidence 10 0 0111 22333466666553 34555567777655332111100001122322222211 0
Q ss_pred HHHhhhhhccccccccCcchhHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHhhccCccccccccccccHHH
Q 000441 772 MKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISV 851 (1508)
Q Consensus 772 ~~~R~~s~~s~~~~~~~~pEy~LprLIhLLAHH~~Pd~~~~~d~~~l~~~~ryL~F~L~~L~~~~e~~~~~~~~~eNiSl 851 (1508)
++..+ . ... ++-.||.+..+|-+. -|.-.+..++ .| ....||.|.+..|+.. ..+-..+
T Consensus 295 -----~s~~~--~-~~d-~~~~L~~i~~~L~~y-mP~~~~~~~l-~f-s~vEcLL~afh~La~k---------~p~~~~~ 353 (556)
T PF05918_consen 295 -----LSPFC--G-AQD-ARQLLPSIFQLLKKY-MPSKKTEPKL-QF-SYVECLLYAFHQLARK---------SPNSLNF 353 (556)
T ss_dssp -----HHTT-------T-HHHHHHHHHHHHHTT-S-----------H-HHHHHHHHHHHHHHTT----------THHHH-
T ss_pred -----HcCCC--C-ccc-HHHHHHHHHHHHHHh-CCCCCCCCcc-cc-hHhhHHHHHHHHHhhh---------Ccchhhh
Confidence 01000 1 122 567777776666544 0322221121 11 3478999999999875 2344455
Q ss_pred HHHHHHHhhccc--ccccc-------ccccchHHHHHHHHHHHHHHhc
Q 000441 852 IISIFRSIKCSE--DIVDA-------AKSKNSHAICDLGLSITKRLSR 890 (1508)
Q Consensus 852 Ly~la~rVKq~r--Da~d~-------~~S~nly~LcDLAq~IIk~~aq 890 (1508)
++-|. +.+.+ |.... +...+|..+.+++|.-|+.+.+
T Consensus 354 lCgyk--~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl~~ 399 (556)
T PF05918_consen 354 LCGYK--IVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKLKQ 399 (556)
T ss_dssp ----------------------TTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhc--ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53332 22222 33321 1235699999999999998864
No 70
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=90.34 E-value=0.47 Score=55.35 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=40.2
Q ss_pred CccccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEcc-CCcceeeecCc
Q 000441 1206 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1255 (1508)
Q Consensus 1206 ~~~~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-DGd~E~l~L~~ 1255 (1508)
-..=||-+|...|-.|..||.++|++.+...+.-.|+|. -|..|.+.|..
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 345599999999999999999999999999999999994 57788888863
No 71
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=45 Score=43.66 Aligned_cols=272 Identities=18% Similarity=0.153 Sum_probs=151.4
Q ss_pred HHHHHHHHHhhh--hhHHHHHHHHHhhhcCCCCCCCCch-hHHHHHHHHHh---hCchhhhh-hhhhhhhcccCCChHHH
Q 000441 37 RLAMNVIEQCAG--KLEAGIKQFLVSSMSGDSRPGHSHI-DYHEVIYDVYR---CSPQILSG-VVPYLTGELLTDQLDTR 109 (1508)
Q Consensus 37 ~LA~~Ic~~~~d--kLq~~I~qyF~~vi~~d~~~~~~~~-kaHeLI~eL~~---~~P~lL~s-VIPqLe~EL~aed~~~R 109 (1508)
.+++.+++.-.+ .=.-.|.++|.-+|-|-....+..+ +.-.||.-|-- --|+.+.+ .+--|-.-|..-...+|
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 344444443332 2334666777776665322222222 23334433332 23444444 44445556667789999
Q ss_pred HHHHHHHHHHhcCCC---CchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCch
Q 000441 110 LKAVGLVGDLFAVPG---SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 186 (1508)
Q Consensus 110 llAT~lLG~Mfs~~g---s~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DE 186 (1508)
+.|+-.|.++=+.++ .+....|..+. -||.|++||.+.+-.+. ..++ -.+++.+|-+|.+.
T Consensus 144 iqAv~aLsrlQ~d~~dee~~v~n~l~~li------qnDpS~EVRRaaLsnI~----vdns------Tlp~IveRarDV~~ 207 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKDEECPVVNLLKDLI------QNDPSDEVRRAALSNIS----VDNS------TLPCIVERARDVSG 207 (892)
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH------hcCCcHHHHHHHHHhhc----cCcc------cchhHHHHhhhhhH
Confidence 999999999987653 34444444443 38999999998876643 3333 34678899999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHH-HHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCc-------chhhcccc
Q 000441 187 NVRKQVVAVICDVACHALNSIPVET-VKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI-------NQNEFEWI 258 (1508)
Q Consensus 187 kVR~aaVkaI~~la~~~l~~Vs~el-L~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~-------~~~~~~wI 258 (1508)
-+|.-|-..+-.= .++...+.+. ...+--=+-|+..+||..+...|+.=|=.+. +|+. ..+....+
T Consensus 208 anRrlvY~r~lpk--id~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~----dgni~ElL~~ldvsnss~v 281 (892)
T KOG2025|consen 208 ANRRLVYERCLPK--IDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS----DGNILELLERLDVSNSSEV 281 (892)
T ss_pred HHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc----cccHHHHHHHhccccchHH
Confidence 9999855543221 1333333322 2355556779999999999999998777653 2221 01112233
Q ss_pred hHHHhhhhccCCCCcchHHHHhhcc---CcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000441 259 PGKILRCLYDKDFGSDTIESVLCGS---LFPTGFSVKDRVRHWVRIF--SGFDRIEMKALEKILEQKQRLQQEMQRYLSL 333 (1508)
Q Consensus 259 PskIL~~~Y~nD~e~~lVE~vL~e~---LlP~~~~~~~R~~rll~l~--~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l 333 (1508)
.-+.|++++.. .-+.++... +.|...+..+-+--|..+| +..|+ ....+..++-.-..+...|-+|++.
T Consensus 282 avk~lealf~~-----v~e~v~~~k~f~~~~~~~~t~Eiaf~~~al~l~~~~~e-~~e~le~i~pe~~~~~d~l~~~i~~ 355 (892)
T KOG2025|consen 282 AVKALEALFSG-----VREDVGSCKNFDLILVEDLTPEIAFLWCALCLKSKGDE-GTEFLELILPEPVVLVDYLLRYIQS 355 (892)
T ss_pred HHHHHHHHHHH-----HHHHhhhhhcccchhhhcccHHHHHHHHHHHHHhhcch-hhHHHHHhCCCHHHHHHHHHHhhhh
Confidence 44444444421 112222211 3334444445566676665 44443 3444444444445566677777776
Q ss_pred Hhh
Q 000441 334 RQM 336 (1508)
Q Consensus 334 ~e~ 336 (1508)
.-.
T Consensus 356 ~~~ 358 (892)
T KOG2025|consen 356 VYE 358 (892)
T ss_pred HHH
Confidence 543
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=1.1e+02 Score=43.42 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC-C---HHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 171 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-P---VETVKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 171 ~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V-s---~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
..|++-|-.--.|||-+|+-+ ...|...-..+...+ + .++|..|..-+-+|-+.||..+--+|+.|-+.
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 356666666679999999987 444555444443322 2 26677888889999999999999999998875
No 73
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=11 Score=49.32 Aligned_cols=224 Identities=14% Similarity=0.159 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHHH---HHhhhcCCCCCCCCchhHHHHHHHHHhhCchhhhhhhhhhhhcccCCChHH
Q 000441 32 NDTARRLAMNVIEQCAGKLEAGIKQF---LVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDT 108 (1508)
Q Consensus 32 s~~Ay~LA~~Ic~~~~dkLq~~I~qy---F~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~ 108 (1508)
++-|+-|-..+..++.+.-+....++ ..+.+... ...-...+-..|..|..+.|..|+..+..|.--|.+..+.+
T Consensus 221 ~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~l 298 (865)
T KOG1078|consen 221 SPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVAL 298 (865)
T ss_pred chhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHH
Confidence 44688777777777777766644443 34444422 11123345567778888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCC---------------------------------------------------------------
Q 000441 109 RLKAVGLVGDLFAVPGS--------------------------------------------------------------- 125 (1508)
Q Consensus 109 RllAT~lLG~Mfs~~gs--------------------------------------------------------------- 125 (1508)
|-.|+++|-++-..+..
T Consensus 299 RfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai 378 (865)
T KOG1078|consen 299 RFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAI 378 (865)
T ss_pred HHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHH
Confidence 88888888887654311
Q ss_pred -chhhhcHHHHH---HHHhhh--cCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHh
Q 000441 126 -ANNEQFHSVFS---EFLKRL--TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDV 199 (1508)
Q Consensus 126 -~fa~~y~~~w~---~fL~R~--~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~l 199 (1508)
.+-..||.-|. .||++. .+=..+--.++|+++..|+..+|+..+ -.+..||+-+-|-+- +.-++..+.-+
T Consensus 379 ~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe--~~L~~LCefIEDce~--~~i~~rILhlL 454 (865)
T KOG1078|consen 379 RSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE--RGLEHLCEFIEDCEF--TQIAVRILHLL 454 (865)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh--HHHHHHHHHHHhccc--hHHHHHHHHHH
Confidence 12344555554 566553 233444555677777777776764322 234556665555443 23344444445
Q ss_pred hhhcC-CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhccCCC
Q 000441 200 ACHAL-NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDF 271 (1508)
Q Consensus 200 a~~~l-~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~ 271 (1508)
...-+ ...|..-++.++.|+-==+..||..|..+|+++=. +. ......||+.+-+|.++.|-
T Consensus 455 G~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~---~~-------~~l~~sI~vllkRc~~D~Dd 517 (865)
T KOG1078|consen 455 GKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGA---QD-------VVLLPSILVLLKRCLNDSDD 517 (865)
T ss_pred hccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhc---CC-------CCccccHHHHHHHHhcCchH
Confidence 55444 35577778899999988899999999999998761 11 12356799999998876553
No 74
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.15 E-value=0.48 Score=40.01 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=30.0
Q ss_pred hHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHH
Q 000441 157 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVI 196 (1508)
Q Consensus 157 ~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI 196 (1508)
...++...|..-..+.+.+.+..||.|++..||.+||..|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4455666665545568888999999999999999988753
No 75
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.98 E-value=0.83 Score=57.95 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=88.2
Q ss_pred HHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhH
Q 000441 82 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 161 (1508)
Q Consensus 82 L~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL 161 (1508)
.-...|+-|...+..|++.|+...+-.|.+|.+.+..+|-.+. -+...-...-..-.+|..|++.-||...++.+..+|
T Consensus 336 m~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 336 MVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred hHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999999999999999998753 567777778888889999999999999999999999
Q ss_pred hcCCCC-----------------CChHHH---HHHHHHhhcCCchHHHHH
Q 000441 162 LTDPSR-----------------ADAPQI---LTALCDRLLDFDENVRKQ 191 (1508)
Q Consensus 162 ~~~p~~-----------------~~~~eI---i~~L~~rL~D~DEkVR~a 191 (1508)
+.||-. ..+.++ -+.++++|.|.++.|-..
T Consensus 415 ~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 415 MRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred hcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999921 011222 246677788888877644
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.96 E-value=1 Score=44.84 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC--CChHHHHHHHHHhhcCCch
Q 000441 109 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 186 (1508)
Q Consensus 109 RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~--~~~~eIi~~L~~rL~D~DE 186 (1508)
|..+.-.|+.+--+-+.......+.+-..-|.-|.|.++.||-...++..+|....... .-..+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44555555555333344466677888888999999999999999999999988764321 1235889999999999999
Q ss_pred HHHHHHH
Q 000441 187 NVRKQVV 193 (1508)
Q Consensus 187 kVR~aaV 193 (1508)
.||.+|.
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 9999964
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=88.84 E-value=3.4 Score=51.37 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=11.5
Q ss_pred HHHHHhhhcCCChhHHHHHHHHhH
Q 000441 135 FSEFLKRLTDRIVAVRMSVLEHVK 158 (1508)
Q Consensus 135 w~~fL~R~~Dks~~VR~~wVe~~~ 158 (1508)
+...+....|-.+.||.+++++.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg 111 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh
Confidence 444444444444445555554444
No 78
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.74 E-value=5.1 Score=53.47 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=107.3
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCC--C----------------------------------------
Q 000441 88 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--S---------------------------------------- 125 (1508)
Q Consensus 88 ~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g--s---------------------------------------- 125 (1508)
+++..+-|.|+.++.+.+=..|..|++-|.+.+..+. .
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998764 1
Q ss_pred chhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhh-hhcC
Q 000441 126 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA-CHAL 204 (1508)
Q Consensus 126 ~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la-~~~l 204 (1508)
.|-..-..++..+|.|+.|+-+.+|-+.+.++-.++.+.+ ...+.+++..-|-+--..+|-..-..+...- ....
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 0111113456678888888888888888888877777554 2356677777777778887777444433321 1221
Q ss_pred CCCCH----HHHHHHHHHhccCChhHHHHHHHHHHHHHHHhh
Q 000441 205 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 205 ~~Vs~----elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 242 (1508)
..++. .+...++-.+.|+...||..|...++.+++.+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 22333 444577778888888888888888888888763
No 79
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=1.5e+02 Score=42.34 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=103.8
Q ss_pred hhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC---CChH
Q 000441 95 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAP 171 (1508)
Q Consensus 95 PqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~---~~~~ 171 (1508)
|-|.-.==..+..++-.-|..-+-++.++..-...-+.+++.+.|--..++.=.||.+++-+..++|..+|.. +...
T Consensus 1001 PrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp 1080 (1702)
T KOG0915|consen 1001 PRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP 1080 (1702)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3333333346777877777777777777544444566889999999999999999999999999999988742 3345
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc---CC---CC-CHHHHHHH-----HHHhccCChhHHHHHHHHHHHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHA---LN---SI-PVETVKLV-----AERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~---l~---~V-s~elL~~L-----aeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
+|+.++-.-.=|-.|.||.||=++...++.-. .+ .. ..+++..+ .+=+.-|-..||+-+|.+|.+|-+
T Consensus 1081 elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K 1160 (1702)
T KOG0915|consen 1081 ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK 1160 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH
Confidence 67777777778899999999766655444322 11 12 22444433 333445557999999999999988
Q ss_pred Hhh
Q 000441 240 GCC 242 (1508)
Q Consensus 240 ~~~ 242 (1508)
.+-
T Consensus 1161 ssg 1163 (1702)
T KOG0915|consen 1161 SSG 1163 (1702)
T ss_pred hch
Confidence 763
No 80
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=1.3e+02 Score=41.38 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-------HHhhhcCCCCCCCCchh--HHHHHHHHHhhCchhhh-hhhhhhhhcccC
Q 000441 34 TARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLT 103 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~~dkLq~~I~qy-------F~~vi~~d~~~~~~~~k--aHeLI~eL~~~~P~lL~-sVIPqLe~EL~a 103 (1508)
.+--+|......|--.+.++|.+| |+.++...=..-+..++ +-.-+.+|....|..+. .|+|.|=....+
T Consensus 514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC
Confidence 344567777777777777777665 33333321000111111 22334448888999998 588888888888
Q ss_pred CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcC
Q 000441 104 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 183 (1508)
Q Consensus 104 ed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D 183 (1508)
.+...|..++-..|.++++-. .-+|-+.. ..+=|++|... ++..++.|-.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFY 644 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhc
Confidence 999999999998888886521 11111111 22233443322 23333344333
Q ss_pred Cc--hHHHHHHHHHHHHhhhhcCC----CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhh
Q 000441 184 FD--ENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 243 (1508)
Q Consensus 184 ~D--EkVR~aaVkaI~~la~~~l~----~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 243 (1508)
.- +..|.++++.|..+.-.... .+.......+++-+++-+ .+|..|...++.++..|+-
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 33 66777777777776655443 223333445566665555 8999999999999998863
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=86.35 E-value=14 Score=47.25 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCch-hHHHHHHHHHhhC-----chhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcC
Q 000441 49 KLEAGIKQFLVSSMSGDSRPGHSHI-DYHEVIYDVYRCS-----PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 122 (1508)
Q Consensus 49 kLq~~I~qyF~~vi~~d~~~~~~~~-kaHeLI~eL~~~~-----P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~ 122 (1508)
-.+|||-.+|..++..-++..+..+ .+.+-+..|-++. +.+|.+.|+-+... .=..-..|+++||-|--.
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHh
Confidence 4789999999998864322222222 2445555555543 34566666666553 455667899999988765
Q ss_pred CCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc--CCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhh
Q 000441 123 PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT--DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 200 (1508)
Q Consensus 123 ~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~--~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la 200 (1508)
....++...|++--..-....|..|.||-+-.++...+-.. || +++-+++.|.+++-||..+|... ++.++...
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~tt 360 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP---DIQKIIPTLLDALADPSCYTPEC-LDSLGATT 360 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCcccchHHH-HHhhccee
Confidence 55567888899999999999999999999877766554332 33 47778899999999999888765 44444433
Q ss_pred h-hcCCCCCHHHHH-HHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 201 C-HALNSIPVETVK-LVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 201 ~-~~l~~Vs~elL~-~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
+ +-+..-+-++|- .|..=+.++....++.|....+++++..
T Consensus 361 FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 3 222332334443 4444466677888888888888877754
No 82
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.32 E-value=11 Score=51.17 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHH
Q 000441 34 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 113 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT 113 (1508)
..+..-..+.+...|.++..|..+|.+|.+- --+--+..+|..++
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH-----------------------------------RYRDV~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH-----------------------------------RYRDVDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee-----------------------------------ecccCchHHHHHHH
Confidence 4445556666666677777777777766541 11224567899999
Q ss_pred HHHHHHhcCCCCchhhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHh-----hc
Q 000441 114 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 182 (1508)
Q Consensus 114 ~lLG~Mfs~~gs~fa~~y~~~w~--~fL~R----~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~r-----L~ 182 (1508)
+-||. ..+.||+.|- .||+= ..|+..+||..||+++..+..+.-...-....+.-++.| ..
T Consensus 309 qeLgi--------Wi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGI--------WIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHH--------HHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 99995 4456666665 44432 589999999999999999888732111122344555555 36
Q ss_pred CCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHH-HHHHHhhh
Q 000441 183 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA-DIFRGCCL 243 (1508)
Q Consensus 183 D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La-~LY~~~~~ 243 (1508)
|.+.-||...... .+.......++.+-+..|...|-|-++.||+.|+..|- +++..++.
T Consensus 381 d~~~~Vrav~L~~--~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~ 440 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVL--CLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVAN 440 (1048)
T ss_pred hcchhHHHHHHHH--HHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccc
Confidence 7777777664433 22334455778888889999999999999999999884 45555543
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=85.85 E-value=4.9 Score=47.90 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 212 VKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 212 L~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
+..+.++++|....||..|...|+.+-..
T Consensus 182 ~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 182 IPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 44566677777777788877777776554
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.89 E-value=8.2 Score=48.04 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=83.4
Q ss_pred HHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhh-cCCChhHHHHHHHHhHH
Q 000441 81 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRMSVLEHVKS 159 (1508)
Q Consensus 81 eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~-~Dks~~VR~~wVe~~~~ 159 (1508)
+-+.-.|.+-+.=+..|+ .|+.|- +=|=..++ +..|...+..+ .|-++.||...+-...
T Consensus 21 ~~a~~~p~~~l~~la~ld---------eRL~Ah-LdgL~~~G---------~~a~~~L~~aL~~d~~~ev~~~aa~al~- 80 (410)
T TIGR02270 21 KRALVAPDYVLEDLAELE---------ERLLAH-VDGLVLAG---------KAATELLVSALAEADEPGRVACAALALL- 80 (410)
T ss_pred HHHhcCCCCCHHHHHhHH---------HHHHHH-HHHHHHhh---------HhHHHHHHHHHhhCCChhHHHHHHHHHh-
Confidence 344556666555554443 366665 44433333 35788888888 5788999887554432
Q ss_pred hHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 160 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 160 IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
.. +....+..|...|-|+++.||.+++++++.+- +......|..-+.|..+.||..++..|+..
T Consensus 81 --~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~r 144 (410)
T TIGR02270 81 --AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG-------GRQAEPWLEPLLAASEPPGRAIGLAALGAH 144 (410)
T ss_pred --cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------chHHHHHHHHHhcCCChHHHHHHHHHHHhh
Confidence 11 11235899999999999999999999987532 334455667777889999999999888874
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=83.80 E-value=8.5 Score=45.92 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=92.6
Q ss_pred HHHhhC-chhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCC------------h
Q 000441 81 DVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI------------V 147 (1508)
Q Consensus 81 eL~~~~-P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks------------~ 147 (1508)
-|-.+- |..+-..+++|+. .++..+|..|...||.+-.... +...+.-.+|.. -
T Consensus 97 aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 97 ALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred HHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHH
Confidence 333443 5555555555544 6899999999999998876532 222222222222 1
Q ss_pred hHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHH
Q 000441 148 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 227 (1508)
Q Consensus 148 ~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR 227 (1508)
.+|...+.....+- . ...+..|...+.|.+..||.+|..+++.+.... ..+...+..-+.|-...||
T Consensus 164 ~~r~~a~~~l~~~~--~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 164 DVRAAAAEALGELG--D------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHHHHHHHcC--C------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHH
Confidence 57777776655321 1 256778889999999999999999999987765 3455677888999999999
Q ss_pred HHHHHHHHHHHH
Q 000441 228 RYTMERLADIFR 239 (1508)
Q Consensus 228 ~eAm~~La~LY~ 239 (1508)
..++..||.+=.
T Consensus 231 ~~~~~~l~~~~~ 242 (335)
T COG1413 231 KAALLALGEIGD 242 (335)
T ss_pred HHHHHHhcccCc
Confidence 999999987644
No 86
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.98 E-value=11 Score=46.77 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=110.3
Q ss_pred HHh-hCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHh
Q 000441 82 VYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 160 (1508)
Q Consensus 82 L~~-~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~I 160 (1508)
+|. +--++|..|+--|-. +++...|.+|.+.|++|+-.+.+.|...---+-..+|.-.+|-...|=....+.|-.+
T Consensus 322 vWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred HHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 555 344556655533322 4789999999999999998876656655556778899999999999988899999888
Q ss_pred HhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhh----hhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441 161 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 161 L~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la----~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
|.+|--. .-+.-++.+++-.|+..=.++++..-.+. ...+..+=.+++=++.+=.---...||+.|+=+|-.
T Consensus 399 las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 399 LASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred HHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 8876321 34556677777799999999887765542 233333333444455555566667999999999999
Q ss_pred HHHHh
Q 000441 237 IFRGC 241 (1508)
Q Consensus 237 LY~~~ 241 (1508)
+|+..
T Consensus 475 mv~~v 479 (516)
T KOG2956|consen 475 MVNRV 479 (516)
T ss_pred HHHHH
Confidence 99975
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.22 E-value=7.7 Score=51.41 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=118.8
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCC-CCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC-
Q 000441 90 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR- 167 (1508)
Q Consensus 90 L~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~-gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~- 167 (1508)
-..+.|-|.....+..-..|-.=...|...++.- ..-+.-..|.++--.|.-..=-++.||+.-.+.++..+.-++..
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3457777777777788888888888888888743 22344577888888888888889999999999999988887642
Q ss_pred -CChHHHHHHHHHhhcCCc---hHHHHHHHHHHHHhhhhcC----CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000441 168 -ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 168 -~~~~eIi~~L~~rL~D~D---EkVR~aaVkaI~~la~~~l----~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
.....+++.|..--.|.| --||..|.+.+..+....+ ...-+.+++.+.-=+-|||..||++|+.+=..-|-
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 345577888887778888 6799999999999887443 34467899999999999999999999987655443
No 88
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.30 E-value=16 Score=46.33 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-hccCChhHHHHHHHHHHHHHH-HhhhhccCCC
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLADIFR-GCCLRNFNGS 249 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR-~RDKK~~VR~eAm~~La~LY~-~~~~~~~~~~ 249 (1508)
--+.++-.|++=-.--||.+||.++..++...-+.+..+.+..+..| +-|+.-.||..|--.|-.+-. .+|.- -
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~p----l 562 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEP----L 562 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhc----c
Confidence 34455555555555566666666666666654444433333333333 335555666666555544432 12211 0
Q ss_pred cchhhcccchHHHhhhh
Q 000441 250 INQNEFEWIPGKILRCL 266 (1508)
Q Consensus 250 ~~~~~~~wIPskIL~~~ 266 (1508)
...+.|+.||+-.+.+.
T Consensus 563 ~~sd~~~dipsle~~l~ 579 (898)
T COG5240 563 FSSDELGDIPSLELELI 579 (898)
T ss_pred ccccccCCcchhHHhhh
Confidence 12345788888776654
No 89
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.77 E-value=1.3e+02 Score=35.57 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=88.7
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHhhhhcC-CCCCH---HH-HHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 000441 175 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPV---ET-VKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 249 (1508)
Q Consensus 175 ~~L~~rL~D~DEkVR~aaVkaI~~la~~~l-~~Vs~---el-L~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~ 249 (1508)
+.|...|.+.|+.+|..|+..++.+...-. ..++. .+ +....+|+.|.. .|.- |+.+|..|.+...
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~~~------- 72 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKMKN------- 72 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhCcC-------
Confidence 468889999999999999999988765433 23433 22 357788886653 3443 3777777774321
Q ss_pred cchhhcccchHHHhhhhccCCCCcchHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000441 250 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQR 329 (1508)
Q Consensus 250 ~~~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~ 329 (1508)
++.... ..++..+ +...-+..++...|...+-.+-.-++. ...++ +..-...+..
T Consensus 73 --------~~~~~~---------~~i~~~l-~~~~~~q~~~q~~R~~~~~ll~~l~~~-~~~~l------~~~~~~fv~~ 127 (262)
T PF14500_consen 73 --------FSPESA---------VKILRSL-FQNVDVQSLPQSTRYAVYQLLDSLLEN-HREAL------QSMGDDFVYG 127 (262)
T ss_pred --------CChhhH---------HHHHHHH-HHhCChhhhhHHHHHHHHHHHHHHHHH-hHHHH------HhchhHHHHH
Confidence 111110 0123333 333334445555665443322222222 12222 1112345666
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 000441 330 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD 374 (1508)
Q Consensus 330 yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFa 374 (1508)
|+++++ |+-.|..---+-+.+..+.+.|+-+.-+++-++.++
T Consensus 128 ~i~~~~---gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~ 169 (262)
T PF14500_consen 128 FIQLID---GEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFS 169 (262)
T ss_pred HHHHhc---cCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhh
Confidence 777664 445566655566666777777875444555555544
No 90
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=79.46 E-value=3.3 Score=44.96 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000441 76 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 155 (1508)
Q Consensus 76 HeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe 155 (1508)
-+++.++++..+..-..++-|+-..+-+.....-..=+.+|+.|..... .....|.+....|+.-+....+.+-...+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p-~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAP-LTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-H-HHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4688888888888888888888888876655533445788888876532 356778888899999999999999999999
Q ss_pred HhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 156 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 156 ~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99999988764 344678888888999999999999998864
No 91
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=2.3e+02 Score=37.84 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=106.1
Q ss_pred hhCch-hhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhH
Q 000441 84 RCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 161 (1508)
Q Consensus 84 ~~~P~-lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~-fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL 161 (1508)
++|-+ ++-.|+|++|+.++++|=..|-.|+-.+|-++-+|..+ +-.--+..-..-+.=..|.+.-||-.-.-..++|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 44444 44469999999999999999999999999999988532 11111233333444455999999976666667777
Q ss_pred hcCCCC----CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCH------------HH---HHHHHHHhccC
Q 000441 162 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ET---VKLVAERLRDK 222 (1508)
Q Consensus 162 ~~~p~~----~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~------------el---L~~LaeR~RDK 222 (1508)
...|+. ...+.++..|..=|+| ..+|=..+|-++..|+-.....++. .+ |-.+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 666532 2234556677777776 6889999999998887432211111 12 22445555545
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 000441 223 SVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 223 K~~VR~eAm~~La~LY~~~ 241 (1508)
-...|..|-+.|+.|-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 6789999999999998854
No 92
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=78.92 E-value=23 Score=48.73 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=99.4
Q ss_pred CchhHHHHHHHHH-----hhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCC
Q 000441 71 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 145 (1508)
Q Consensus 71 ~~~kaHeLI~eL~-----~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dk 145 (1508)
....-.++...+| ...| |.+-+|-|-.=+.+....+|..|.+.+|.||.. .-...+-.+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 4444555666666 3344 666778888888999999999999999999975 24566777788887777788
Q ss_pred ChhHHHHHHHHhHHhHhcCCCC---CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc--------CCCCCHHHH
Q 000441 146 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--------LNSIPVETV 212 (1508)
Q Consensus 146 s~~VR~~wVe~~~~IL~~~p~~---~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~--------l~~Vs~elL 212 (1508)
+--+|.+-...+..+|..--.+ .-..-++.-|..|+-|.++.||.+|-+++..+...- +..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888877666666666542111 112246788999999999999999999998875422 345677777
No 93
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.68 E-value=4.9 Score=50.78 Aligned_cols=141 Identities=21% Similarity=0.188 Sum_probs=91.0
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHHHHHhcCCC--CchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc-----C
Q 000441 92 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 164 (1508)
Q Consensus 92 sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g--s~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~-----~ 164 (1508)
+.+|.+-.-|.+.+.++|-.|+-.||.+.+... .+++-.+. +-...|.=++.... +.++..+...|.| +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g-~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG-ALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc-chHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 577888888999999999999999999988642 12222221 22223333333222 3343333333333 3
Q ss_pred CC--CCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCC----CCHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 000441 165 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 165 p~--~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~----Vs~elL~~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
|. .+....++++|...|+..|+.|...||-+|+-++-..... +...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 3456788999999999999999999999998776433222 233444556666777777777777666665
No 94
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=78.39 E-value=2.8 Score=53.05 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=71.6
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 000441 137 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 216 (1508)
Q Consensus 137 ~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~La 216 (1508)
.|..|..|+++.||+.|+.+....+.+-|+--.-.-.++++.=-|.|..+.||+.+++.+--+..+.++. . .++.+.
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~-d--~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT-D--AIRRFV 355 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc-h--HHHHHH
Confidence 7999999999999999999999888887742111124456666799999999999999988776655432 1 333334
Q ss_pred HHh---------ccCChhHHHHHHHHHHHHHHH
Q 000441 217 ERL---------RDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 217 eR~---------RDKK~~VR~eAm~~La~LY~~ 240 (1508)
+|- +|=.. ||-.++..|..+--.
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 443 34444 888888888765443
No 95
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.99 E-value=2.4e+02 Score=37.47 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=116.1
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHH-------HH--------
Q 000441 74 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-------EF-------- 138 (1508)
Q Consensus 74 kaHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~-------~f-------- 138 (1508)
++--++|.++-=-|+-|-..+|-|-+.|..+|+.+-..||..+.++--...-++-+--|..|+ +|
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 577899999999999999999999999999999999999999999987654444444455544 22
Q ss_pred HhhhcCCChhHHHHHHHHhHHhHhc----------------------CCCC-CChHHHHHHHHHhhcCCchHHHHHHHHH
Q 000441 139 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSR-ADAPQILTALCDRLLDFDENVRKQVVAV 195 (1508)
Q Consensus 139 L~R~~Dks~~VR~~wVe~~~~IL~~----------------------~p~~-~~~~eIi~~L~~rL~D~DEkVR~aaVka 195 (1508)
.+...=..|..+...++-+-.++.+ +|.. .-++-.+..|..-+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2344445566665554433332221 2211 1122334677778899999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000441 196 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 238 (1508)
Q Consensus 196 I~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY 238 (1508)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 999999988776442 122344557888999999998874443
No 96
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.56 E-value=60 Score=42.02 Aligned_cols=145 Identities=13% Similarity=0.062 Sum_probs=94.1
Q ss_pred HhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCC-------chhhhcHHHHHHHHhhh-cCCChhHHHHHH
Q 000441 83 YRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVL 154 (1508)
Q Consensus 83 ~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs-------~fa~~y~~~w~~fL~R~-~Dks~~VR~~wV 154 (1508)
-+-+|++|-.+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-......|+.. .+.+...++.++
T Consensus 388 ~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 388 RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence 3557888888888888777777889999999999988842111 11233334444444333 345666788888
Q ss_pred HHhHHhHhcCCCCCChHHHHHHHHHhhc---CCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHH
Q 000441 155 EHVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTM 231 (1508)
Q Consensus 155 e~~~~IL~~~p~~~~~~eIi~~L~~rL~---D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm 231 (1508)
++++.+- +| ..+..|...+. .....||.+||.++..++......+-.-++..+.. .+..+.||-.|.
T Consensus 468 kaLGN~g--~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~ 537 (574)
T smart00638 468 KALGNAG--HP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAV 537 (574)
T ss_pred HhhhccC--Ch------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHH
Confidence 8887522 23 34444444444 45678999999999988876665554444444422 224478999988
Q ss_pred HHHHHH
Q 000441 232 ERLADI 237 (1508)
Q Consensus 232 ~~La~L 237 (1508)
..|.+-
T Consensus 538 ~~lm~t 543 (574)
T smart00638 538 LVLMET 543 (574)
T ss_pred HHHHhc
Confidence 877654
No 97
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=77.38 E-value=19 Score=48.57 Aligned_cols=195 Identities=21% Similarity=0.287 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhhcccC-------CChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCCh
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 147 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sVIPqLe~EL~a-------ed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~ 147 (1508)
+-.+|.-|+.|-|++-..++-+|..+... -++..++..+..||.|.-..-..+...+ +....+|.=|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 56899999999999999999999988753 4688899999999999876433333222 366778888888999
Q ss_pred hHHHHHHHHhHHhHhcCCCCCC-hHHHHHHHHH----hhcCCchHHHHHHHHHHH---------------------Hhhh
Q 000441 148 AVRMSVLEHVKSCLLTDPSRAD-APQILTALCD----RLLDFDENVRKQVVAVIC---------------------DVAC 201 (1508)
Q Consensus 148 ~VR~~wVe~~~~IL~~~p~~~~-~~eIi~~L~~----rL~D~DEkVR~aaVkaI~---------------------~la~ 201 (1508)
++=+.+++.|+.+|.++|+..+ .+-+++.+.. +-+|+-...=+.-+--+| .|.+
T Consensus 560 Em~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~~efiR~Li~ 639 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRASALDSRQATLIENAYYLCNPPERSKRLSKKRPPMQEFIRYLIR 639 (1128)
T ss_pred HHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHhHHhccChhhcccccccCCcHHHHHHHHHH
Confidence 9999999999999999996422 2233344442 234442221111111110 1111
Q ss_pred hcCCCCCHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhh--ccCCCCcchHHH
Q 000441 202 HALNSIPVETVKLVAERLRDKS-VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL--YDKDFGSDTIES 278 (1508)
Q Consensus 202 ~~l~~Vs~elL~~LaeR~RDKK-~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~--Y~nD~e~~lVE~ 278 (1508)
..+.....+..-.+ -|..|-. +.|-+.++..+++.|..-++.+. + +- .+|.++ |..++=.+.||.
T Consensus 640 ~dL~k~tvd~~lkl-lRkl~W~D~e~~~yli~~~~k~w~iky~~i~-------~---lA-~llaGL~~y~~~fvi~VID~ 707 (1128)
T KOG2051|consen 640 SDLSKDTVDRVLKL-LRKLDWSDPEVKQYLISCFSKPWKIKYQNIH-------A---LA-SLLAGLSSYHPEFVIHVIDH 707 (1128)
T ss_pred HHhccccHHHHHHH-HHhcccccHHHHHHHHHHhhhhhccccccHH-------H---HH-HHHHHHHhhchhhhhhhHHH
Confidence 11111111111122 2444444 67899999999999987554321 1 11 223333 455554567888
Q ss_pred Hhhc
Q 000441 279 VLCG 282 (1508)
Q Consensus 279 vL~e 282 (1508)
||-+
T Consensus 708 vlE~ 711 (1128)
T KOG2051|consen 708 VLED 711 (1128)
T ss_pred HHHH
Confidence 8543
No 98
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=76.58 E-value=47 Score=43.56 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhhhhh------HHHHHHHHHhhhcC--CCCCCCC--chhH----HHHHHHHHhhCchhhhhhhhhhhh
Q 000441 34 TARRLAMNVIEQCAGKL------EAGIKQFLVSSMSG--DSRPGHS--HIDY----HEVIYDVYRCSPQILSGVVPYLTG 99 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~~dkL------q~~I~qyF~~vi~~--d~~~~~~--~~ka----HeLI~eL~~~~P~lL~sVIPqLe~ 99 (1508)
+=+.|+...+.+....| ++...+|+-.+++- ....++. +.-. ..|....-.+.|++.+.++ .
T Consensus 731 ~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL----~ 806 (1172)
T KOG0213|consen 731 QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTIL----W 806 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHH----H
Confidence 44466666666555433 45666666666651 1111111 1111 2333333445566555555 5
Q ss_pred cccCCChHHHHHHHHHHHHHhcCC------------CC----chhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc
Q 000441 100 ELLTDQLDTRLKAVGLVGDLFAVP------------GS----ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 163 (1508)
Q Consensus 100 EL~aed~~~RllAT~lLG~Mfs~~------------gs----~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~ 163 (1508)
-|++....+|+.|..|+|.+.--- |. .+...||.+.-.-|| ++..|...
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILg---------------AikaI~nv 871 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILG---------------AIKAIVNV 871 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHH---------------HHHHHHHh
Confidence 577899999999999999875321 11 344566666555544 34333333
Q ss_pred CC---CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH-HHH---HHHHHhccCChhHHHHHHHHHHH
Q 000441 164 DP---SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TVK---LVAERLRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 164 ~p---~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e-lL~---~LaeR~RDKK~~VR~eAm~~La~ 236 (1508)
+- -..-+++|+..|.--|..-.+||-...|..++.++-.....|+.. -++ .|.|-++--|..+|+.|.+++|-
T Consensus 872 igm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 872 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred ccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 20 012267888888888888899999999999999999988888773 222 44566677778999999999997
Q ss_pred HHHH
Q 000441 237 IFRG 240 (1508)
Q Consensus 237 LY~~ 240 (1508)
|=+.
T Consensus 952 Iaka 955 (1172)
T KOG0213|consen 952 IAKA 955 (1172)
T ss_pred HHHh
Confidence 7663
No 99
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=76.42 E-value=71 Score=38.41 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHHHHHHhhccccchHHHHHHHHHhh--cchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 000441 478 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 544 (1508)
Q Consensus 478 ~~L~~lL~~~n~~~~e~~LkaLa~~~--k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~ 544 (1508)
.+.+..|.+......+.+|..+.++- +.+++.+-.....+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 44555556555556677777776442 22333333223346677777778899888889988865443
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.12 E-value=2.8e+02 Score=37.07 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=89.2
Q ss_pred CchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHh
Q 000441 86 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 160 (1508)
Q Consensus 86 ~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks--~~VR~~---wVe~~~~I 160 (1508)
+|++-...--+|...|...++..++.|.+.+=.|+.. | ..+|+++..- -||.=.+ .++-.. ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~I-iRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTI-IRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHH-hheeeccCchHHHHHHHHHHHHcc--
Confidence 3444444445677788999999999999887777764 3 2345544432 2332211 122211 122222
Q ss_pred HhcCCCCCChHH---HHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 161 LLTDPSRADAPQ---ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 161 L~~~p~~~~~~e---Ii~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
.+++......| +.++++.=|.-|.|=||=.+...+|.+--.-+ =+.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~EL---lepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPEL---LEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHH---hhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 13333322233 34888888999999999999999988654221 112233445555667889999999999999
Q ss_pred HHHh
Q 000441 238 FRGC 241 (1508)
Q Consensus 238 Y~~~ 241 (1508)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9984
No 101
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=76.04 E-value=2.7e+02 Score=39.90 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHHHHHHHhh----CCc--Ccccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhh-hhcccchHHHHHHHHhh
Q 000441 458 CMDILGILARF----SPL--LLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCL 526 (1508)
Q Consensus 458 a~eLL~~IS~~----~P~--lFk~~--v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~-~~~~~s~l~~~L~~lal 526 (1508)
|-.||+.+|.+ -|. ++..| +..|...|+...-.+|..++-+|.++..+-+++ -.-.+-..+.+|.++.-
T Consensus 505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh 582 (2195)
T KOG2122|consen 505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH 582 (2195)
T ss_pred CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh
Confidence 33456555443 233 44443 688888888876677888888888775443322 11112234555555543
No 102
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.76 E-value=30 Score=40.51 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCc---hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCC
Q 000441 48 GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP---QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 124 (1508)
Q Consensus 48 dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P---~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g 124 (1508)
.+++.||.+-..+++... ..+........++..| .+.+ .++.+.||.|-.-|...++.+|..|.++|..|-..|.
T Consensus 89 ~~Ik~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 89 EQIKMYIPQVCEETVSSP-LNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 344445444444444321 1222223345666655 2334 5667778888777888999999999999987666552
Q ss_pred ---CchhhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHhHhcCC------C---------CCChHHHHHHHHHhhcCCc
Q 000441 125 ---SANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDP------S---------RADAPQILTALCDRLLDFD 185 (1508)
Q Consensus 125 ---s~fa~~y~~~w~~fL~R~~Dks~~VR~~-wVe~~~~IL~~~p------~---------~~~~~eIi~~L~~rL~D~D 185 (1508)
.-+..+=++-|..++.+..+...-+|+. |++.+...+.... . ..+...+.+.|..-...+|
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d 246 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPD 246 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCC
Confidence 1122344566777778877777777765 4555545454431 0 0344456667777778899
Q ss_pred hHHHHHHH
Q 000441 186 ENVRKQVV 193 (1508)
Q Consensus 186 EkVR~aaV 193 (1508)
+.||..||
T Consensus 247 ~ev~~~v~ 254 (254)
T PF04826_consen 247 PEVKEQVI 254 (254)
T ss_pred HHHhhhcC
Confidence 99998864
No 103
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.08 E-value=8.8 Score=50.88 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=101.2
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHH
Q 000441 100 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 179 (1508)
Q Consensus 100 EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~ 179 (1508)
++..--.-+|-.++-|+|+|.-+++ .+++.|-+++..=|.... .++||--+|=+..+|-.... ....--+..+..
T Consensus 939 ~g~~~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~--~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 939 EGAMFSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNT--AHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAA 1013 (1529)
T ss_pred cccccchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhh--HHHHhcceeeeehhhHHHHH--HHHHHhhHHHHH
Confidence 3333345689999999999998876 699989888887776654 47788766655555444211 111234678899
Q ss_pred hhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 180 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 180 rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
+|.||++-||.+++.-+..+-...+..-.++++--+---+-|-+..||..|=-.+|.+...
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998888877777788876556667899999998877777776664
No 104
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.03 E-value=43 Score=40.39 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=58.3
Q ss_pred hCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHh
Q 000441 85 CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 162 (1508)
Q Consensus 85 ~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~ 162 (1508)
+++.++...+|.+..| -++.....++..|+.-+..-+..+. +.+...|-+=+.|+.+.||..|+.+++.++.
T Consensus 19 ~s~~i~~~l~~~~~KE---~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKE---SNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 6678888888888887 5788888888888887754333333 5678888889999999999999999999987
No 105
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.46 E-value=67 Score=41.21 Aligned_cols=195 Identities=17% Similarity=0.129 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHhc--C--C--CC---hHHH--HHHHHHHHHh-hhhhHHHHHHHHHhhhcCCCCCCCC------ch---h
Q 000441 16 QEDLLVILLSALG--R--N--KN---DTAR--RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHS------HI---D 74 (1508)
Q Consensus 16 p~~vLDvIL~qf~--~--~--ks---~~Ay--~LA~~Ic~~~-~dkLq~~I~qyF~~vi~~d~~~~~~------~~---k 74 (1508)
.++|++-++..|. . . +. ++++ ++---+|... +....+.+.|-+.+.+.++...... .. .
T Consensus 270 d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~ 349 (501)
T PF13001_consen 270 DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSS 349 (501)
T ss_pred CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcch
Confidence 3567787887665 2 1 11 1444 3334444442 2335566666666666654221111 11 0
Q ss_pred ---HHHHHHHHHhhCchhhhhhhhhhh----hcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCCh
Q 000441 75 ---YHEVIYDVYRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 147 (1508)
Q Consensus 75 ---aHeLI~eL~~~~P~lL~sVIPqLe----~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~ 147 (1508)
.|-=...|-.+.|.++...+|.++ ....+++...|..|=++||.+...... +...--++..-+.....+-.+
T Consensus 350 ~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~-l~~~d~~li~~LF~sL~~~~~ 428 (501)
T PF13001_consen 350 WIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS-LFSKDLSLIEFLFDSLEDESP 428 (501)
T ss_pred HHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc-cccccHHHHHHHHHHhhCcch
Confidence 011122355777888888888884 345678999999999999988876443 333334555556666688899
Q ss_pred hHHHHHHHHhHHhHhcCCCCCC-----hHHHHH-HHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 000441 148 AVRMSVLEHVKSCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVK 213 (1508)
Q Consensus 148 ~VR~~wVe~~~~IL~~~p~~~~-----~~eIi~-~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~ 213 (1508)
+||.++-++...++.+-+.... ...... .+.....+..-.+|.+||+-... +..++.++...+.
T Consensus 429 evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~--~fpf~d~~aR~i~ 498 (501)
T PF13001_consen 429 EVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA--CFPFSDVPARYIC 498 (501)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH--hCCccchHHHHHH
Confidence 9999999999887776432211 112222 22333456777799999987543 3344555555443
No 106
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=74.18 E-value=9 Score=49.65 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=95.4
Q ss_pred hhhhhhhcccCCC-hHHHHHHHHHHHHHhcCCCCchhhhcHHHHH-HHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCCh
Q 000441 93 VVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 170 (1508)
Q Consensus 93 VIPqLe~EL~aed-~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~-~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~ 170 (1508)
|+|+|=.-|.-.+ ...=+-..=.+|+.+.... |+.-+. ..++=|.=.+..||+..++++...+-.-+..-..
T Consensus 294 vlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~ 367 (690)
T KOG1243|consen 294 VLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN 367 (690)
T ss_pred HHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc
Confidence 5555555454444 2222223333444444332 333333 2334455567899999999998877643322233
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHhhhh-cCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000441 171 PQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 171 ~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~-~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
.+|...|..=+.|++.-+|..+|+++..++-. .-..+..|+|+.++.---|-...+|..+...||+|=-
T Consensus 368 d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 368 DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 47889999999999999999999999998763 3456889999999887778888888888888877633
No 107
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=74.09 E-value=3.7 Score=34.79 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHHHhhhhcCCCC-CHHHHHHHHHHhccCChhHHHHHHHHH
Q 000441 195 VICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTMERL 234 (1508)
Q Consensus 195 aI~~la~~~l~~V-s~elL~~LaeR~RDKK~~VR~eAm~~L 234 (1508)
++..+...+...+ ...++..+..|+.|.++.||+.|+..|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3445555555444 346778999999999999999998764
No 108
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=73.21 E-value=81 Score=37.97 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=100.9
Q ss_pred hhCchhhh----hhhhhhhhcccCCChHHHHHHHHHHHHHhcC--CCCchhhhcHHHHHHHHhhhcCCC--hhHHHHHHH
Q 000441 84 RCSPQILS----GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLE 155 (1508)
Q Consensus 84 ~~~P~lL~----sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~--~gs~fa~~y~~~w~~fL~R~~Dks--~~VR~~wVe 155 (1508)
++.|+.+. .++.+++.=|+......+.+|.+++|-+.-. .|.+-..-|..+...+..-..|.+ +.+|.+|+.
T Consensus 74 ~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~ 153 (309)
T PF05004_consen 74 RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLE 153 (309)
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 44555543 3566777778777778899999999977544 345555666666665555556655 578999987
Q ss_pred HhHHhHhcCC-CCCChHHHHHHHHHh----hc--CC---------chHHHHHHHHHHHHhhhhcC----CCCCHHHHHHH
Q 000441 156 HVKSCLLTDP-SRADAPQILTALCDR----LL--DF---------DENVRKQVVAVICDVACHAL----NSIPVETVKLV 215 (1508)
Q Consensus 156 ~~~~IL~~~p-~~~~~~eIi~~L~~r----L~--D~---------DEkVR~aaVkaI~~la~~~l----~~Vs~elL~~L 215 (1508)
+.+-+..-.. +.++..++++.|..- .. |. +..|-.+|+.+.+-+..... ...-.+.+..|
T Consensus 154 aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l 233 (309)
T PF05004_consen 154 ALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPAL 233 (309)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7765433221 223333333554411 11 22 35689999988877664321 11222345567
Q ss_pred HHHhccCChhHHHHHHHHHHHHHHHhh
Q 000441 216 AERLRDKSVLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 216 aeR~RDKK~~VR~eAm~~La~LY~~~~ 242 (1508)
.+.+--....||..|=+.||-||-...
T Consensus 234 ~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 234 SELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 777777788999999999999999875
No 109
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=4e+02 Score=37.38 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHHHHh--hCCcCc----cccHHHHHHHHhhc--cc--cchHHHHHHHHHhhcchhhhhhcccchHHHH
Q 000441 451 NAQFMQSCMDILGILAR--FSPLLL----GGTEEELVNLLKEE--NE--IIKEGILHVLAKAGGTIREQLAATSSSVDLL 520 (1508)
Q Consensus 451 ~~~~~~~a~eLL~~IS~--~~P~lF----k~~v~~L~~lL~~~--n~--~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~ 520 (1508)
+......|-++|..|.. .+=..- ..-+.+.+.+|... ++ ..+...|-+++.+...+..-+ .+..+...
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l--d~~~l~~l 828 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL--DDETLEKL 828 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHH
Confidence 34556778889988884 222211 11245555555553 22 112222444444432211111 12223333
Q ss_pred HHHHh---hcCCHHHHHHHHHHHHhhcC
Q 000441 521 LERLC---LEGSRRQAKYAVHALAAITK 545 (1508)
Q Consensus 521 L~~la---l~GtP~qAK~AVriLaa~~~ 545 (1508)
+...| ..++|..||.||..|..+..
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33333 34569999999999875543
No 110
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=71.50 E-value=72 Score=41.59 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=88.4
Q ss_pred hhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcC----C---------CCchhhhcHHHHHHHHhh-hcCCChhH
Q 000441 84 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSANNEQFHSVFSEFLKR-LTDRIVAV 149 (1508)
Q Consensus 84 ~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~----~---------gs~fa~~y~~~w~~fL~R-~~Dks~~V 149 (1508)
+-.+++|..+.+.+.......+..+|..|.-.+|.|.-. . .......|-.-+...|+. ....+..-
T Consensus 427 ~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 506 (618)
T PF01347_consen 427 RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEE 506 (618)
T ss_dssp ---HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHH
T ss_pred CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHH
Confidence 445677777777777666667888999999999988732 1 224455665666655653 23456788
Q ss_pred HHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCC---chHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCC--h
Q 000441 150 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--V 224 (1508)
Q Consensus 150 R~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~---DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK--~ 224 (1508)
++.++++++++- +| .++..|...+.+. ...||.+||.|+..++... |..+...|..-..|.. +
T Consensus 507 ~~~~LkaLgN~g--~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----~~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 507 KIVYLKALGNLG--HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----PEKVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHHHT---G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHHHHHHHHHHH-TTS-H
T ss_pred HHHHHHHhhccC--Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----cHHHHHHHHHHhcCCCCCh
Confidence 999999999753 23 4666666666666 8999999999887664443 4444444455545543 6
Q ss_pred hHHHHHHHHHHH
Q 000441 225 LVKRYTMERLAD 236 (1508)
Q Consensus 225 ~VR~eAm~~La~ 236 (1508)
.||-.|...|.+
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 799998877765
No 111
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.30 E-value=2.3e+02 Score=35.28 Aligned_cols=224 Identities=17% Similarity=0.182 Sum_probs=125.3
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcC-CCCC
Q 000441 130 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL-NSIP 208 (1508)
Q Consensus 130 ~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l-~~Vs 208 (1508)
+|-+-|..-|+-..--+-+=|++ .++++++...-|+ ++.+-+++-.+.+-|-|-.||.+|++.+-.++.-+. ..|-
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 67777777776666656666654 5788888887776 456888888899999999999999988877666432 2222
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccCCCc-c-hhhcccchHHHhhhhccCCCCcchHHHHhhccCcC
Q 000441 209 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI-N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFP 286 (1508)
Q Consensus 209 ~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~-~-~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP 286 (1508)
+.+-+.|- --.|+.||...-. +.. . ..++..|-++|+ |
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~----~D~~irek~l~fi~tKl~----------------------~ 138 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV----GDEQIREKVLKFIRTKLI----------------------T 138 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh----hhHHHHHHHHHHHHHHhh----------------------c
Confidence 22222221 2235555654321 111 1 122334444443 3
Q ss_pred CCCC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHH
Q 000441 287 TGFS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKIL 350 (1508)
Q Consensus 287 ~~~~--~~~R----~~rll~l~~~LD~~a~kaf~~il~~q~~l~-----~~~~~yL~l~e~~n~g-----d~~ei~~kL~ 350 (1508)
+.-. .++- +.-+-..+...+..++.+|+.+++.-..++ ..|+++.+--+..++- ..++.-.++-
T Consensus 139 l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfi 218 (460)
T KOG2213|consen 139 LKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFI 218 (460)
T ss_pred ccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHH
Confidence 2110 0111 122224556667778888888887655544 2344444332222221 1234444555
Q ss_pred HHHHHHhhhcCCchhHHHHHH---------HHHhhhcHHHHHHHHHHh--cCCCCHH
Q 000441 351 FCFRVMSRSFAEPAKAEENFL---------ILDQLKDANVWKILMNLL--DSNTSFD 396 (1508)
Q Consensus 351 ~~I~~Ls~~fPDp~Ka~e~L~---------kFaklnD~RiykLLk~~i--dp~td~k 396 (1508)
.|...-.-+|.-.......+. .|+++-+.|=..+|+.+- ++.|+..
T Consensus 219 sCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq 275 (460)
T KOG2213|consen 219 SCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQ 275 (460)
T ss_pred HHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHH
Confidence 666555566665555444332 366667888888888874 4444433
No 112
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=70.46 E-value=62 Score=41.92 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=41.3
Q ss_pred CchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCC
Q 000441 86 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 165 (1508)
Q Consensus 86 ~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p 165 (1508)
.|..+....|+|+.. ..-...+|..|+..|.++--.. -....+-+|.-|+.+- ..++||++.+-.+. .++|
T Consensus 475 ~~~~i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm---~t~P 545 (574)
T smart00638 475 HPSSIKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVLM---ETKP 545 (574)
T ss_pred ChhHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHHH---hcCC
Confidence 344444444454411 1123456666666666553211 1223344555554443 33556666554432 3445
Q ss_pred CCCChHHHHHHHHHh-hcCCchHHHHHH
Q 000441 166 SRADAPQILTALCDR-LLDFDENVRKQV 192 (1508)
Q Consensus 166 ~~~~~~eIi~~L~~r-L~D~DEkVR~aa 192 (1508)
+. .++..+... ..|++..|+..+
T Consensus 546 ~~----~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 546 SV----ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred CH----HHHHHHHHHHhhcCcHHHHHHh
Confidence 42 222222222 345555665543
No 113
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.19 E-value=3.7e+02 Score=35.80 Aligned_cols=302 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCC--HHHHHHHHH
Q 000441 461 ILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS--RRQAKYAVH 538 (1508)
Q Consensus 461 LL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gt--P~qAK~AVr 538 (1508)
.+..+-..+-++.+--+..+.+.|...|+.-+-.+|+.++.+|.. .+.. .|..-+-++-..|+ +-.-|-|+-
T Consensus 97 ~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~e---a~~~DI~KlLvS~~~~~~vkqkaAL 170 (938)
T KOG1077|consen 97 FISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAE---AFADDIPKLLVSGSSMDYVKQKAAL 170 (938)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHH---HhhhhhHHHHhCCcchHHHHHHHHH
Q ss_pred HHHhhcCCC-ccchHHHHHHHHHHhhhccC--CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccCCccCC----
Q 000441 539 ALAAITKDD-GLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRN---- 611 (1508)
Q Consensus 539 iLaa~~~~~-~~~~~~~L~~~Lv~~L~~~s--~l~t~LasL~~Ia~~aP~vfe~~~~eI~~fiik~ILl~~~~~~~---- 611 (1508)
||..+.++. ...--.+-.++|+.-|++.. -..+...-+-+|++.-|+.|.....--+.-+..-+......-.+
T Consensus 171 clL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy 250 (938)
T KOG1077|consen 171 CLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYY 250 (938)
T ss_pred HHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceee
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhhcCCCcccccchhHHHHHHHHHhhccCCCccCCCCChhhhhhhhHHHHHHHHHh
Q 000441 612 DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 691 (1508)
Q Consensus 612 ~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~~~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRL~Aa~~lLKL 691 (1508)
.-..-| +-+-.+++|-+. ....-.+.-..++.+|..|++. ..-|+..+--..--|-.++|
T Consensus 251 ~vP~PW--------L~vKl~rlLq~~----p~~~D~~~r~~l~evl~~iLnk------~~~~~~~k~vq~~na~naVL-- 310 (938)
T KOG1077|consen 251 FVPAPW--------LQVKLLRLLQIY----PTPEDPSTRARLNEVLERILNK------AQEPPKSKKVQHSNAKNAVL-- 310 (938)
T ss_pred cCCChH--------HHHHHHHHHHhC----CCCCCchHHHHHHHHHHHHHhc------cccCccccchHhhhhHHHHH--
Q ss_pred hhccCCCCCHHHHHHHhhcc-cCCchhHHHHHHHHHHHhHhcCCCchhHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHH
Q 000441 692 SRQWDHKIPVDVFHLTLRTP-EISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHH 770 (1508)
Q Consensus 692 a~~~d~~i~~~~f~ll~l~~-qD~~~~VR~~Fl~KL~k~L~~~~Lp~ry~al~fl~a~a~ep~e~~e~K~~l~~~I~~~~ 770 (1508)
|-++.+++ -|++++.=.+-++.|-++|..+...+||+++=-+|-.+.-.+.-+..|.+..++|.+..
T Consensus 311 ------------FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk 378 (938)
T KOG1077|consen 311 ------------FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK 378 (938)
T ss_pred ------------HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q ss_pred --------HHHHhhhhhccccccccCcchhHHHHHHHH
Q 000441 771 --------QMKARQISVQSDANSFATYPEYIIPYLVHT 800 (1508)
Q Consensus 771 --------~~~~R~~s~~s~~~~~~~~pEy~LprLIhL 800 (1508)
+...-.++++.+...--..-+-+|-||-|+
T Consensus 379 terDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 379 TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETA 416 (938)
T ss_pred cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhc
No 114
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.08 E-value=38 Score=45.35 Aligned_cols=142 Identities=21% Similarity=0.267 Sum_probs=97.9
Q ss_pred HHHHHHHhhh---cCC--CCCCCCchhHHHHHHHHHhhCchh-h----hhhhhhhhhcccCCChHHHHHHHHHHHHHhcC
Q 000441 53 GIKQFLVSSM---SGD--SRPGHSHIDYHEVIYDVYRCSPQI-L----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 122 (1508)
Q Consensus 53 ~I~qyF~~vi---~~d--~~~~~~~~kaHeLI~eL~~~~P~l-L----~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~ 122 (1508)
|=+.||.++. ... ..+..+.--+|..+--+-..+|.- | -..+|.|=+-|.-.|+.+|+-++++|-..+-.
T Consensus 860 ykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 860 YKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 3456666643 111 123333444677776666677751 1 12456677779999999999999999988776
Q ss_pred CCCchhhhcHHHHH-HHHhhhcCCC---hhHHHHHHHHhHHhHhcCCCC---CChHHHHHHHHHhhcCCchHHHHHHHHH
Q 000441 123 PGSANNEQFHSVFS-EFLKRLTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAV 195 (1508)
Q Consensus 123 ~gs~fa~~y~~~w~-~fL~R~~Dks---~~VR~~wVe~~~~IL~~~p~~---~~~~eIi~~L~~rL~D~DEkVR~aaVka 195 (1508)
.+ .+...|-+|+- .+|.=-.|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+
T Consensus 940 ~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 940 SE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 55 46666766554 5554444444 899999999997766534532 3345899999999999999999999876
No 115
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=69.44 E-value=8.1 Score=30.19 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 212 VKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 212 L~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
|-.+.+.+.|..+.||..|...|+.|...
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45667889999999999999999999863
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=68.52 E-value=4.2e+02 Score=35.75 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=80.9
Q ss_pred HhhhcHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhcCCCc---hHHHHHHHHHhh------hccccChHHHHHHHHHH
Q 000441 374 DQLKDANVWKILMNLLDSNTSFDQ-AFTGRDDLLKILGAKHR---LYDFLSTLSMKC------SYLLFNKEHVKEILLEV 443 (1508)
Q Consensus 374 aklnD~RiykLLk~~idp~td~kt-v~ka~kELlkrL~~~~~---~~d~l~~Ll~Rs------S~lifNks~V~~LL~~~ 443 (1508)
.+.+|.=++++||++...+...+. .......|++.+..... ..+++-+|-.-. +-++-+-.-||.|.+.+
T Consensus 463 ~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 463 LKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred HhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHh
Confidence 346899999999999887644433 23455666666665422 344444443221 11233445667777766
Q ss_pred HhhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchHHHHHHHHHhhcchhh-----hhh
Q 000441 444 AAQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE-----QLA 511 (1508)
Q Consensus 444 ~~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e-----~~~ 511 (1508)
..... .+ ...++....++..+ ..++. +-+..|+++|....+ --+-+||+++-|..-+.. .+.
T Consensus 543 ~~g~~-~d----Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll 616 (708)
T PF05804_consen 543 KPGAS-ED----DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLL 616 (708)
T ss_pred CCCCC-Ch----HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 43211 11 12233333333322 22222 347899999987422 124566777655433221 111
Q ss_pred cccchHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 000441 512 ATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 543 (1508)
Q Consensus 512 ~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~ 543 (1508)
. .......|-.+.-..++..+|.|=.+|-.+
T Consensus 617 ~-~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 617 K-ETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred h-ccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 122334444444444555555555555433
No 117
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=68.20 E-value=2.3e+02 Score=32.69 Aligned_cols=128 Identities=17% Similarity=0.051 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhh------ccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHh-hc
Q 000441 455 MQSCMDILGILARFSPLLLGGTEEELVNLLKE------ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 527 (1508)
Q Consensus 455 ~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~------~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~la-l~ 527 (1508)
...++++|..+-...|.+| +..+.++..+.- .+.......+-+++..-..+-...|.....+...+..++ ..
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 4578899999999999999 455555444111 111122223333332222333334444456788888887 56
Q ss_pred CCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhccCCCchHHHHHHHHHhhccc
Q 000441 528 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMP 585 (1508)
Q Consensus 528 GtP~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~L~~~s~l~t~LasL~~Ia~~aP~ 585 (1508)
..+..+-+|+.+|..++..+- ..+....+-|..+| ....-|..+.+|..++.+.|.
T Consensus 134 ~~~~~~alale~l~~Lc~~~v-vd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAEV-VDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhcc
Confidence 778888899999998885432 23333455555556 233668888889999988874
No 118
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=67.40 E-value=20 Score=35.54 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.9
Q ss_pred hhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHH
Q 000441 98 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 177 (1508)
Q Consensus 98 e~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L 177 (1508)
-.+|..+.+++|-.+..+|.+++..+. .....-+.+...|+.=..|-++-|=+.+|+....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 356778899999999999999999876 34556789999999999999999999999999988887774 588899
Q ss_pred HHhhcCCchH
Q 000441 178 CDRLLDFDEN 187 (1508)
Q Consensus 178 ~~rL~D~DEk 187 (1508)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 8888887753
No 119
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=67.23 E-value=9.5 Score=35.46 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=26.6
Q ss_pred cCCeEEEecCC---CCceEEEEEEeecCCCCeeEEEccC
Q 000441 1210 IGYRIKVWWPM---DKQFYEGTIKSYDPIKKKHVILYDD 1245 (1508)
Q Consensus 1210 vG~rikV~Wp~---D~~~Y~G~V~~y~~~~~~H~v~YdD 1245 (1508)
.|.+|.|.--. ..+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 58889998765 3699999999999876 99999964
No 120
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=66.14 E-value=1.1e+02 Score=38.33 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHh--hhhhHHHHHHHHHhhhcCCCCCCCCchhHH--------HHHHHHHhhCchhhhhhhhhhhhcccC
Q 000441 34 TARRLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYH--------EVIYDVYRCSPQILSGVVPYLTGELLT 103 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~--~dkLq~~I~qyF~~vi~~d~~~~~~~~kaH--------eLI~eL~~~~P~lL~sVIPqLe~EL~a 103 (1508)
++.++...++|++ .+.+...+..++..+ ....+......+. -||...+..+.+++...+-.| .+
T Consensus 209 ~~~~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~ 282 (415)
T PF12460_consen 209 AALQLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS 282 (415)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC
Confidence 6667777888884 444666666665554 1111111111222 233333333333344433333 22
Q ss_pred CChHHHHHHHHHHHHHhcC-CCC----chh--------hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC---
Q 000441 104 DQLDTRLKAVGLVGDLFAV-PGS----ANN--------EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 167 (1508)
Q Consensus 104 ed~~~RllAT~lLG~Mfs~-~gs----~fa--------~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~--- 167 (1508)
..+...|.+.+|-+++. ++. +.+ +-|..+....+..+...+..+|..++.+..++|.+-|..
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH
Confidence 77899999999999988 321 111 234555567788888888889999999999999987742
Q ss_pred CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 000441 168 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER 218 (1508)
Q Consensus 168 ~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR 218 (1508)
.+..+|++-|.+.|-=+|..||.++..++..+.......+.+ -+.+|..|
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl~sLI~~ 410 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE-HLSSLIPR 410 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHH
Confidence 345678888899998888889999999999887766444433 23444433
No 121
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.13 E-value=3.9e+02 Score=34.55 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=111.1
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHhcCCC---Cchhhhc--HHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC--
Q 000441 94 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-- 166 (1508)
Q Consensus 94 IPqLe~EL~aed~~~RllAT~lLG~Mfs~~g---s~fa~~y--~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~-- 166 (1508)
.+.+-.-+.+++.+.++.||..+-+++|... .+.+-.. =+.+-.||+|. ..+.+|.+..=++.+|-.-.++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~--~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD--DNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC--CChhHHHHHHHHHHHHhcCchhhc
Confidence 3444455678999999999999999999753 2222222 23566788754 4566666555455555442221
Q ss_pred -CCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCC----CCCHHHHHHHHHHh-ccCChhHHHHHHHHHHHHHHH
Q 000441 167 -RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERL-RDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 167 -~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~----~Vs~elL~~LaeR~-RDKK~~VR~eAm~~La~LY~~ 240 (1508)
.-.....+..|...|..+++.||-+||-|++.+|-.... .+.-..|..|..-+ .+.+....+.++=+|.+|.+.
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 011113456789999999999999999999999875542 22333333333333 333357778888888888774
Q ss_pred hhhhccCCCcchhhcccchHHHhhhhccCCCCcchHHHH
Q 000441 241 CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 279 (1508)
Q Consensus 241 ~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~~lVE~v 279 (1508)
- +++.....+.-|=..|+.+.|..|.+ .+.|.+
T Consensus 226 k-----~P~P~~~~v~~iLp~L~~ll~~~D~~-Vl~Da~ 258 (514)
T KOG0166|consen 226 K-----NPSPPFDVVAPILPALLRLLHSTDEE-VLTDAC 258 (514)
T ss_pred C-----CCCCcHHHHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 2 12333455667777888888888765 234444
No 122
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.40 E-value=38 Score=40.47 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhhCchhhhh----hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhH
Q 000441 74 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 149 (1508)
Q Consensus 74 kaHeLI~eL~~~~P~lL~s----VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~V 149 (1508)
+.-..|+.|-.+.|+.|.. ||.++-.+|+.-.-.+=..|+.++++||+.-+..+-+.-..+-...|.|..+-.-=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4567888888888887655 999999999999999999999999999998766666777888888999988877888
Q ss_pred HHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc-CC----CCCHHHHHHHHHHhccCCh
Q 000441 150 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LN----SIPVETVKLVAERLRDKSV 224 (1508)
Q Consensus 150 R~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~-l~----~Vs~elL~~LaeR~RDKK~ 224 (1508)
|...-.+.-. ..+|.. .+-++..|...+.-.-.+||..++..+.....+- .. ....++...+++-++||=+
T Consensus 187 reda~kAL~a-MV~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp 262 (334)
T KOG2933|consen 187 REDAEKALVA-MVNHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLP 262 (334)
T ss_pred HHHHHHHHHH-HHhccC---hHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhccccc
Confidence 8877777654 334432 3467888999999999999999665543221111 00 1133556789999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 000441 225 LVKRYTMERLADIFRGC 241 (1508)
Q Consensus 225 ~VR~eAm~~La~LY~~~ 241 (1508)
.+|..|=-.+..+..++
T Consensus 263 ~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 263 ELREAARFVRLELKEVL 279 (334)
T ss_pred ccccchhHHHHhHHHHH
Confidence 99966655555444444
No 123
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=65.34 E-value=3.4e+02 Score=33.56 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC-CCCCCCchhHHHHHHHHHhhCch-h-hhh-hhhhhhhcccCCChHHH
Q 000441 34 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSPQ-I-LSG-VVPYLTGELLTDQLDTR 109 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d-~~~~~~~~kaHeLI~eL~~~~P~-l-L~s-VIPqLe~EL~aed~~~R 109 (1508)
.+-.+=+.++.++++.|...+..+|-.++.+- +.......++..|..++-.+.+. - +.. |...+...+..+ .+-
T Consensus 153 erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~ 230 (372)
T PF12231_consen 153 ERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLI 230 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHH
Confidence 77788899999999999999998888766431 11111233466666666554432 2 222 333334444333 777
Q ss_pred HHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHH
Q 000441 110 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 189 (1508)
Q Consensus 110 llAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR 189 (1508)
..-++.|..|+..++. ...=|.+|..+..=..+.- +. ..+...+.+.-...+++.+|..||
T Consensus 231 ~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 231 QLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred HHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHHH
Confidence 8888889999998532 2222788987664432211 11 112345788888899999999999
Q ss_pred HHHHHHHHHhhhhc-CC-CCCHHHHH--------HHHHHhccCCh-hHHHHHHHHHHHHHHHhh
Q 000441 190 KQVVAVICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 190 ~aaVkaI~~la~~~-l~-~Vs~elL~--------~LaeR~RDKK~-~VR~eAm~~La~LY~~~~ 242 (1508)
.+|..+=.-+.+.. .+ ......++ .+..+.-+|.. .||..+|..++.++-.++
T Consensus 292 ~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~f 355 (372)
T PF12231_consen 292 IQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYAF 355 (372)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHHh
Confidence 99999988777622 22 22333332 33333334333 899999999988765444
No 124
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=63.74 E-value=92 Score=43.18 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHhh--CchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHH----hh-hcC-
Q 000441 73 IDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KR-LTD- 144 (1508)
Q Consensus 73 ~kaHeLI~eL~~~--~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL----~R-~~D- 144 (1508)
+++-+|+.+|-++ .-..|..|+|++-+-|.-...++|..|+.||.++++.-. ++....-.+|.+|| .+ .+|
T Consensus 441 ~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d~ 519 (1431)
T KOG1240|consen 441 LAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLNDS 519 (1431)
T ss_pred HHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhccC
Confidence 4477888887665 445788899999999999999999999999999998642 23333333444332 22 244
Q ss_pred CChhHHHHHHHHhHHhHh------------------cC------C------C-CCChHHHHHHHHHhhcCCchHHHHHHH
Q 000441 145 RIVAVRMSVLEHVKSCLL------------------TD------P------S-RADAPQILTALCDRLLDFDENVRKQVV 193 (1508)
Q Consensus 145 ks~~VR~~wVe~~~~IL~------------------~~------p------~-~~~~~eIi~~L~~rL~D~DEkVR~aaV 193 (1508)
-...||++...+++.+-. |. | . ..+..-+...+..-|.|++.-||.+-+
T Consensus 520 ~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Ll 599 (1431)
T KOG1240|consen 520 SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALL 599 (1431)
T ss_pred ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 456677776665543321 11 1 2 233445556777778888888888888
Q ss_pred HHHHHhhhhcCCCCC-HHHHHHHHHHhccCChhHHHHHHHHHH
Q 000441 194 AVICDVACHALNSIP-VETVKLVAERLRDKSVLVKRYTMERLA 235 (1508)
Q Consensus 194 kaI~~la~~~l~~Vs-~elL~~LaeR~RDKK~~VR~eAm~~La 235 (1508)
+.|+.+...-...=+ +=+|..|.-=+-||.+..|..=++.+.
T Consensus 600 e~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 600 ESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence 888887654333222 234567777778888888886666554
No 125
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.76 E-value=54 Score=35.74 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCcccc----HHHHHHHHhhccc-cchHHHHHHHHHhhcc
Q 000441 432 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGT----EEELVNLLKEENE-IIKEGILHVLAKAGGT 505 (1508)
Q Consensus 432 Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~----v~~L~~lL~~~n~-~~~e~~LkaLa~~~k~ 505 (1508)
+++.+..++.++.+--.+.+....-.+..|+..+...+ |++|..| +..|..+|+..++ .+.+.++.+|+.+...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 66777777777654332322223345678999999998 9999776 4667777776444 4566677777655322
Q ss_pred hhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhccCCCchHHHHHHHHHhhccc
Q 000441 506 IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMP 585 (1508)
Q Consensus 506 ~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~~~~L~~~Lv~~L~~~s~l~t~LasL~~Ia~~aP~ 585 (1508)
.. ++|... ++. +||...+....+|..+.+ ..-..+.|.+|+.+-+..|.
T Consensus 99 ~~-~~p~l~-------Rei---~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 IR-GKPTLT-------REI---ATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hc-CCCchH-------HHH---hhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCCc
Confidence 11 122111 111 346655555444442221 11235678899999999999
Q ss_pred ccccchHHHHHHHHHh
Q 000441 586 VFETRESEIEEFIKSK 601 (1508)
Q Consensus 586 vfe~~~~eI~~fiik~ 601 (1508)
.|-.+...|..+++.-
T Consensus 148 t~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 148 TFRPFANKIESALLSL 163 (165)
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999998888753
No 126
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=61.70 E-value=87 Score=35.01 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcC-CCCch---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCC-----
Q 000441 107 DTRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP----- 165 (1508)
Q Consensus 107 ~~RllAT~lLG~Mfs~-~gs~f---------------a~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p----- 165 (1508)
.+|+.|..+|+.++-. +.-.| ....++++...+ .|.++.||++.+..+..+|...-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3799999999999876 21111 122334444444 59999999999999988887531
Q ss_pred ----C------CCC---hHHHHHHHHHhh-----cCCchHHHHHHHHHHHHhhhhc-CCCCCHHHH----HHHHHHhccC
Q 000441 166 ----S------RAD---APQILTALCDRL-----LDFDENVRKQVVAVICDVACHA-LNSIPVETV----KLVAERLRDK 222 (1508)
Q Consensus 166 ----~------~~~---~~eIi~~L~~rL-----~D~DEkVR~aaVkaI~~la~~~-l~~Vs~elL----~~LaeR~RDK 222 (1508)
. ... ...++..+...| ...+-.+=.+.+|++..+.-.. .+.++.+++ ..+.-+++.+
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 0 011 112333333332 4556777778888888776644 466777654 5778899999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 000441 223 SVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 223 K~~VR~eAm~~La~LY~~ 240 (1508)
.+.||..++..++-+...
T Consensus 158 d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 999999999999988764
No 127
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=60.08 E-value=17 Score=37.88 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.0
Q ss_pred CCeEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeeec
Q 000441 1211 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 1253 (1508)
Q Consensus 1211 G~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~L 1253 (1508)
|.+|=..|+.|+-||.|+|...- ..+.-.|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 77888999999999999999998 6677888888888777643
No 128
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=60.05 E-value=3.3e+02 Score=33.75 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=125.7
Q ss_pred HHHHhhcccCccHHHHH-----HHHHHhcCCCCh---HHHHHHHHHHHHhhhhhHHHHH----HHHHhhhcCCCCCCCCc
Q 000441 5 MIVLLEESEDIQEDLLV-----ILLSALGRNKND---TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSH 72 (1508)
Q Consensus 5 L~~lIeEs~~Vp~~vLD-----vIL~qf~~~ks~---~Ay~LA~~Ic~~~~dkLq~~I~----qyF~~vi~~d~~~~~~~ 72 (1508)
|+.++.+...+-.++.- .|...+....+. +||++.+-++..... ++..++ -|..-.+..+....-+.
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 45555555544444332 222223332232 999999998877644 222222 11111222222222245
Q ss_pred hhHHHHHHHHHhh--C-----chhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcC-CCCchhhhcHHHHHHHHhhhcC
Q 000441 73 IDYHEVIYDVYRC--S-----PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTD 144 (1508)
Q Consensus 73 ~kaHeLI~eL~~~--~-----P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~-~gs~fa~~y~~~w~~fL~R~~D 144 (1508)
..|..||+.+..+ . ..++..++--.|. .+...|..|.+||.++.-. |. ++ .+-.-++..+.=..|
T Consensus 86 ~QALkliR~~l~~~~~~~~~~~~vvralvaiae~----~~D~lr~~cletL~El~l~~P~--lv-~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH----EDDRLRRICLETLCELALLNPE--LV-AECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHhhCHH--HH-HHcCCHHHHHHHHHh
Confidence 5789999999888 3 4566666666666 8889999999999998754 32 11 111122334444445
Q ss_pred CChhHHHHHHHHhHHhHhcCCC-C------CChHHHHHHHHHh----hcCCchHH-HHHHH-HHHHHhhhhcCCCC----
Q 000441 145 RIVAVRMSVLEHVKSCLLTDPS-R------ADAPQILTALCDR----LLDFDENV-RKQVV-AVICDVACHALNSI---- 207 (1508)
Q Consensus 145 ks~~VR~~wVe~~~~IL~~~p~-~------~~~~eIi~~L~~r----L~D~DEkV-R~aaV-kaI~~la~~~l~~V---- 207 (1508)
-..++=-.++...-++|. +|. | -+...++..+.+- ..+.. .+ |+.++ ++|.. ..++-..+
T Consensus 159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~-~~~~l~~s~~ai~~-~LrsW~GLl~l~ 235 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDR-ELERLQASAKAIST-LLRSWPGLLYLS 235 (371)
T ss_pred ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccch-HHHHHHHHHHHHHH-HHhcCCceeeee
Confidence 444555566666666554 442 2 2233444555444 22222 22 43333 33333 33332211
Q ss_pred --CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 208 --PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 208 --s~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
+...|+.|.+=++=..+.||+.-+..|-.+++.-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 2367888888888888899999999999998853
No 129
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.76 E-value=4e+02 Score=32.96 Aligned_cols=218 Identities=18% Similarity=0.201 Sum_probs=113.4
Q ss_pred ccHHHHHHHHhhccccchHHHHHHHHHhhc--chhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCccchH
Q 000441 475 GTEEELVNLLKEENEIIKEGILHVLAKAGG--TIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 552 (1508)
Q Consensus 475 ~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k--~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~~~~ 552 (1508)
+-+.-|++++...|+.+.+-+..+++.++- .-+..+.....++++.|..+--.|+++.-=+|.-+|--+..+.+ +.
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~--Yq 285 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE--YQ 285 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch--hh
Confidence 346778888888887777778888876652 22334555566799999999999997643344444333333321 11
Q ss_pred HHHHH-----HHHHhhhccCCCchHHHHHHHHHhhcccccccchHHHH--HHH--HHhhhccCCccCCCCCCCCCCchhh
Q 000441 553 SVLYK-----RLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIE--EFI--KSKILRCSNKIRNDTKACWDDRSEL 623 (1508)
Q Consensus 553 ~~L~~-----~Lv~~L~~~s~l~t~LasL~~Ia~~aP~vfe~~~~eI~--~fi--ik~ILl~~~~~~~~~~~~W~d~se~ 623 (1508)
.++++ -+++-| ..+..|-.|++++||--++-+-... .-|. .|+ +-.||.... .+
T Consensus 286 ~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe--~lI~dagfl~pLVrlL~~~d-------------nE- 348 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNE--VLIADAGFLRPLVRLLRAGD-------------NE- 348 (550)
T ss_pred hHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcc--cceecccchhHHHHHHhcCC-------------ch-
Confidence 11111 122222 3457788899999995544221211 0111 121 113333221 12
Q ss_pred HHHHHHHHHHHHHhhcCCCcc--cc--cchhHHHHHHHHHhhccCCCccCCCCChhhhhhhhHHHHHHHHHhhhcc-CCC
Q 000441 624 CLLKIYGIKTLVKSYLPVKDA--HI--RPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW-DHK 698 (1508)
Q Consensus 624 ~~aKi~aLK~Lvn~ll~~~~~--~~--~~~~~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRL~Aa~~lLKLa~~~-d~~ 698 (1508)
.+|+.|.-+|-|-.-+.... .+ .-.+.++..++. .| |-..+ =|+.|+.++|-|+... ..+
T Consensus 349 -eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l----D~--------pvsvq--seisac~a~Lal~d~~k~~l 413 (550)
T KOG4224|consen 349 -EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL----DG--------PVSVQ--SEISACIAQLALNDNDKEAL 413 (550)
T ss_pred -hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh----cC--------ChhHH--HHHHHHHHHHHhccccHHHH
Confidence 24577888777755433221 11 112455555542 22 32333 3678999999888642 111
Q ss_pred CCHHHHHHHhhcccCCchhHHHHHHHHH
Q 000441 699 IPVDVFHLTLRTPEISFPQAKKLFLSKV 726 (1508)
Q Consensus 699 i~~~~f~ll~l~~qD~~~~VR~~Fl~KL 726 (1508)
+...+...+.-+.-+.+.+||---..-|
T Consensus 414 ld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 414 LDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhcCCcceeecccCccchhhcccHHHHH
Confidence 2112222233334666678875544444
No 130
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.21 E-value=3.5e+02 Score=36.69 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=105.1
Q ss_pred HHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCc-Cccc-cHHHHH---HHHhhccccchHHHHH
Q 000441 423 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL-LLGG-TEEELV---NLLKEENEIIKEGILH 497 (1508)
Q Consensus 423 l~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~-lFk~-~v~~L~---~lL~~~n~~~~e~~Lk 497 (1508)
+-|++-++++--.||.|+..+..-.- -..++-+++-|+.||+.+|- +++. .+...+ +++.- .+...+|-
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~Iey---iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi---~aQR~Ala 316 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEY---IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI---HAQRVALA 316 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhh---hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH---HHHHHHHH
Confidence 44677777777778888887754111 12456688889999999984 3332 222222 22222 23455777
Q ss_pred HHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCcc-------chHHHHHHHHHHhhhc--cC-
Q 000441 498 VLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-------KSLSVLYKRLVDMLEE--KT- 567 (1508)
Q Consensus 498 aLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~~~-------~~~~~L~~~Lv~~L~~--~s- 567 (1508)
+.+++.+.++.+-+..-=...+.|.++-.+-+.+-.-++.-|++.+.+.-.. .+-.+|++++..-|.- ..
T Consensus 317 iaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 7788888766432221123467788888888877777887887777654321 1223455555554431 11
Q ss_pred ---CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccCCc
Q 000441 568 ---HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 608 (1508)
Q Consensus 568 ---~l~t~LasL~~Ia~~aP~vfe~~~~eI~~fiik~ILl~~~~ 608 (1508)
-+...+-.|.-++--.|..|......=+..+++.||.....
T Consensus 397 s~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred cccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 22333344444455557788776544455667888887654
No 131
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.84 E-value=6.1e+02 Score=34.36 Aligned_cols=371 Identities=13% Similarity=0.105 Sum_probs=188.5
Q ss_pred hCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcC
Q 000441 85 CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 164 (1508)
Q Consensus 85 ~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~ 164 (1508)
+.|++.-.|.|++|.-|+.-++-+|.+|+-..-+++-.- .++.+.|- .+|-++..|+++-|=++-|..+-.++..+
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~---~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFV---IAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhh---HHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 567888889999999999999999999999999998642 23554333 35666778899999999999999988877
Q ss_pred CCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhh------hcCCCCCHHHHHHHHHH---hccCChhHHHHHHHHHH
Q 000441 165 PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC------HALNSIPVETVKLVAER---LRDKSVLVKRYTMERLA 235 (1508)
Q Consensus 165 p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~------~~l~~Vs~elL~~LaeR---~RDKK~~VR~eAm~~La 235 (1508)
|+ .+.++.+.. -.-|..+-++.. .+.+.||..+|..-.-| +.=+.- ..|=..+.
T Consensus 211 ~~------~l~~fr~l~--------~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d---~daSd~M~ 273 (866)
T KOG1062|consen 211 PD------ALSYFRDLV--------PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND---ADASDLMN 273 (866)
T ss_pred HH------HHHHHHHHH--------HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC---ccHHHHHH
Confidence 63 344444311 111333333322 34567777665432222 111111 11223333
Q ss_pred HHHHHhhhhccCC----Cc-chhhcccch------------HHHhhhhccCCCCc-chHHHHhhccCcCCCCCHHHHH-H
Q 000441 236 DIFRGCCLRNFNG----SI-NQNEFEWIP------------GKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRV-R 296 (1508)
Q Consensus 236 ~LY~~~~~~~~~~----~~-~~~~~~wIP------------skIL~~~Y~nD~e~-~lVE~vL~e~LlP~~~~~~~R~-~ 296 (1508)
.|-...+.+.+.+ ++ .-+|+..|= -.||--|-.|.-.+ .-|-.-....+++.+....+|- .
T Consensus 274 DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 274 DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 3333333333322 21 122322221 01111121121111 1111111123444444444443 2
Q ss_pred HHHHHHhcCCHH-HHHHH---HHHHHHHH--HHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhH--HH
Q 000441 297 HWVRIFSGFDRI-EMKAL---EKILEQKQ--RLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKA--EE 368 (1508)
Q Consensus 297 rll~l~~~LD~~-a~kaf---~~il~~q~--~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka--~e 368 (1508)
-++..+..-|.. .++|| ++|.+-+. .|-+.|..||+-|+ ++.+..+...|..++..|. |.|. -+
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d-------~~~k~~~as~I~~laEkfa-P~k~W~id 425 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSD-------EDFKADIASKIAELAEKFA-PDKRWHID 425 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHhcC-CcchhHHH
Confidence 334555555542 22333 33332222 25555666666553 3466677777778887773 2232 12
Q ss_pred HHHHHHh-----hhcHHHHHHHHHH---hcCCCCHHHHH--HHHHHHH-HHhcCCC-------chHHHHHHHHH---hhh
Q 000441 369 NFLILDQ-----LKDANVWKILMNL---LDSNTSFDQAF--TGRDDLL-KILGAKH-------RLYDFLSTLSM---KCS 427 (1508)
Q Consensus 369 ~L~kFak-----lnD~RiykLLk~~---idp~td~ktv~--ka~kELl-krL~~~~-------~~~d~l~~Ll~---RsS 427 (1508)
.+.+..+ .||.-+-.+|+-+ ..+.+.|...+ .+..+.. --+.+.. .+.|+=..|+. .--
T Consensus 426 tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~ 505 (866)
T KOG1062|consen 426 TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEE 505 (866)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccC
Confidence 2222222 3665555555544 44455664322 2222211 0111110 01111111222 134
Q ss_pred ccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh
Q 000441 428 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE 486 (1508)
Q Consensus 428 ~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~ 486 (1508)
|..++-|.|-.++..+........ .-..-|+--|--+|.++|.. ..-++.|+.....
T Consensus 506 p~~vtesdivd~l~~v~~~~~s~~-~tk~yal~Al~KLSsr~~s~-~~ri~~lI~~~~~ 562 (866)
T KOG1062|consen 506 PIKVTESDIVDKLEKVLMSHSSDS-TTKGYALTALLKLSSRFHSS-SERIKQLISSYKS 562 (866)
T ss_pred CCcCCHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHhhcccc-HHHHHHHHHHhcc
Confidence 668888888877777654333222 23355666677889999988 5557888876665
No 132
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=58.53 E-value=11 Score=49.48 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=36.5
Q ss_pred ccccCCeEEEecCCC----CceEEEEEEeecCCCC--------eeEEEccCCcceeeec
Q 000441 1207 EDLIGYRIKVWWPMD----KQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLRL 1253 (1508)
Q Consensus 1207 ~~~vG~rikV~Wp~D----~~~Y~G~V~~y~~~~~--------~H~v~YdDGd~E~l~L 1253 (1508)
+.-.+-+|+|||-+. .+|++|+|-+.-|..- +..|+||.|+.+.+.=
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 334788999999854 7899999998766543 6899999997765543
No 133
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=57.97 E-value=21 Score=35.23 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=38.9
Q ss_pred CccccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEc-cCCcceeeecC
Q 000441 1206 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 1254 (1508)
Q Consensus 1206 ~~~~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDGd~E~l~L~ 1254 (1508)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 445588888888899999999999 6777788888988 99999987654
No 134
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=57.64 E-value=42 Score=37.26 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhh
Q 000441 170 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 170 ~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 242 (1508)
++.-++.+.+...+++..||.+|+..+..+...-+.+ |.+.+-+|.-..-|..+.||..|+..|..+...|-
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3455677777899999999999999998866544322 77788888888999999999999999999999873
No 135
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.31 E-value=5.3e+02 Score=33.14 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC----CHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhh
Q 000441 168 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 243 (1508)
Q Consensus 168 ~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V----s~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 243 (1508)
..-..++-.+..|..||+.++|..|+..++.++...++.| +.-+-..+....-|=+..|--+||.+|..+-.....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 3455788899999999999999999999999887655433 333333445555555689999999999988776532
Q ss_pred hccCCCcchhhcccchHHHhhhhccCCCCcchHHHHhhccCcCCC
Q 000441 244 RNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 288 (1508)
Q Consensus 244 ~~~~~~~~~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~ 288 (1508)
. ....-|--|--++-..+-..+.+.+.--.++|+.|.|+.
T Consensus 334 ~-----~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 334 D-----DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred c-----chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 1 111223333344444333333333455666777777664
No 136
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.82 E-value=46 Score=37.09 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=73.4
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCCC-------------c-----------hhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000441 100 ELLTDQLDTRLKAVGLVGDLFAVPGS-------------A-----------NNEQFHSVFSEFLKRLTDRIVAVRMSVLE 155 (1508)
Q Consensus 100 EL~aed~~~RllAT~lLG~Mfs~~gs-------------~-----------fa~~y~~~w~~fL~R~~Dks~~VR~~wVe 155 (1508)
-|...+..+|..|..++.-|+.+... + +.+-|..+.... -...++.+=..+++
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLK 124 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHH
Confidence 35567899999999999999977521 1 123444444433 23456778889999
Q ss_pred HhHHhHhcCCCC----CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhh
Q 000441 156 HVKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 201 (1508)
Q Consensus 156 ~~~~IL~~~p~~----~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~ 201 (1508)
++..++.+-|.. +....++..+..++...|..||.++.-+++.+..
T Consensus 125 ~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 125 CLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999888888843 4556777888899999999999999888887654
No 137
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.45 E-value=51 Score=42.26 Aligned_cols=101 Identities=24% Similarity=0.285 Sum_probs=62.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHhHhcC-C-CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH
Q 000441 133 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-P-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 210 (1508)
Q Consensus 133 ~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~-p-~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e 210 (1508)
.+|.-.|.=..-+.-.||--+++-...+.-.- + +.....-++..|..|+.|-+.-||++||.++|.+--...+.-. .
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-R 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-H
Confidence 34444444444467788988888775433221 1 1234556778888999999999999999999987754433111 1
Q ss_pred HHHHHHHH-hccCChhHHHHHHHHH
Q 000441 211 TVKLVAER-LRDKSVLVKRYTMERL 234 (1508)
Q Consensus 211 lL~~LaeR-~RDKK~~VR~eAm~~L 234 (1508)
...++..- --|....||+.||--+
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 11122222 3477778999887543
No 138
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=56.23 E-value=71 Score=41.21 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=93.1
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHH--H----hhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHH
Q 000441 102 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF--L----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 175 (1508)
Q Consensus 102 ~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~f--L----~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~ 175 (1508)
..-+..+|..++.-|++-+.. +|+.|..- | .=..|.+..||...++-...+....|+..-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 445778899999999887754 34444311 1 125799999999999999999988887654455665
Q ss_pred HHHHh-----hcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChh---HHHHHHHHHHHHHHHhh
Q 000441 176 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 242 (1508)
Q Consensus 176 ~L~~r-----L~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~---VR~eAm~~La~LY~~~~ 242 (1508)
-+..| ..|.|= ||..+++..|.+.. +-.++.+-+..+.--|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55555 578998 99999999887543 3344555555555668888876 78888888888777654
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=55.53 E-value=6.1e+02 Score=33.29 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=77.7
Q ss_pred hccccchHHHHHHHHHhhcchhhhhhc---ccchHHHHHHHHhhcC-CHHHHHHHHHHHHhhcC---CCccchHHHHHHH
Q 000441 486 EENEIIKEGILHVLAKAGGTIREQLAA---TSSSVDLLLERLCLEG-SRRQAKYAVHALAAITK---DDGLKSLSVLYKR 558 (1508)
Q Consensus 486 ~~n~~~~e~~LkaLa~~~k~~~e~~~~---~~s~l~~~L~~lal~G-tP~qAK~AVriLaa~~~---~~~~~~~~~L~~~ 558 (1508)
..++.+.+.+|+.|+.--..++..+.. .-..|+..+.+-++.. |..+=...+.+|..+.- .........|++-
T Consensus 144 ~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~i 223 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDI 223 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHH
Confidence 345567788888776333333322221 1223444444455544 56676677777665443 1111223455665
Q ss_pred HHHhhhccC----CCchHHHHHHHHHhhccccccc--chHHHHHHHHHhhhccCCccCCCCCCCCCCchhhHHHHHHHHH
Q 000441 559 LVDMLEEKT----HLPAVLQSLGCIAQTAMPVFET--RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIK 632 (1508)
Q Consensus 559 Lv~~L~~~s----~l~t~LasL~~Ia~~aP~vfe~--~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK 632 (1508)
+.+..+-.. .-+.++..|-+..+.|-..|.. ++..+++|+..+||-. |.+-.+ ..|+-=||
T Consensus 224 i~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~-----------l~~l~e--~~kl~lLk 290 (556)
T PF05918_consen 224 IEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPK-----------LSDLPE--DRKLDLLK 290 (556)
T ss_dssp HHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCC-----------TT-------HHHHHHH
T ss_pred HHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCC-----------hhhCCh--HHHHHHHH
Confidence 555432111 3345666555555555556664 5888999999998853 222211 23667788
Q ss_pred HHHHhhcCCCcccccchhHHHHHHH
Q 000441 633 TLVKSYLPVKDAHIRPGIDDLLGIL 657 (1508)
Q Consensus 633 ~Lvn~ll~~~~~~~~~~~~~ll~lL 657 (1508)
+|+-.+--+...+++..+..++.+|
T Consensus 291 ~lAE~s~~~~~~d~~~~L~~i~~~L 315 (556)
T PF05918_consen 291 LLAELSPFCGAQDARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHHTT----THHHHHHHHHHHH
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHH
Confidence 8777665544333344444455554
No 140
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=54.01 E-value=19 Score=41.10 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.2
Q ss_pred cccCCeEEEecCCCCceEEEEEEeecCCCCeeEEEc
Q 000441 1208 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1243 (1508)
Q Consensus 1208 ~~vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y 1243 (1508)
.=||.+|.+-|++|..||..+|....+.++.-.|.+
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 449999999999999999999999999765554444
No 141
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=53.94 E-value=1.4e+02 Score=37.77 Aligned_cols=125 Identities=19% Similarity=0.165 Sum_probs=78.7
Q ss_pred HHHHHHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHH
Q 000441 418 FLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILH 497 (1508)
Q Consensus 418 ~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e~~Lk 497 (1508)
.+...|.-..-.+||..-+ ++.+.+...++..+...+..+...|..++.+.|.. ++.-++.+|...+++....+|+
T Consensus 353 vL~~ml~~Q~~~l~DstE~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~~~~iK 428 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEI-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILTADEPRAVAVIK 428 (516)
T ss_pred HHHHHHHhchHhhhchHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhcCcchHHHHHHH
Confidence 4455555555667776654 35666655555555455566677888899998864 5666777766666667788999
Q ss_pred HHHHhhcchhhh-hhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCC
Q 000441 498 VLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 546 (1508)
Q Consensus 498 aLa~~~k~~~e~-~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~ 546 (1508)
.+++..+.+... +-..-.++.+.+..-+-.-+-..=|-||-||.++...
T Consensus 429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 999887665422 1111224455554444433455668899999987653
No 142
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=8.2e+02 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 212 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL 212 (1508)
.+++.|..-|.|.|-.||-.|.|.++.++.+.+..+..+++
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi 381 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVI 381 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHH
Confidence 45678888899999999999999999988776544333333
No 143
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=52.61 E-value=59 Score=43.58 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=95.8
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHhcCCCCc-hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHH
Q 000441 94 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 172 (1508)
Q Consensus 94 IPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~-fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~e 172 (1508)
+|.+...-..|--+-|..|..++|.+...-..+ .-..-++.+..+ .+|..|.||.++.+.++.+-..-+.....+.
T Consensus 200 v~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~ 276 (759)
T KOG0211|consen 200 VPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSE 276 (759)
T ss_pred HHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhh
Confidence 333333333344556677777777766543212 223444444444 5788999999988887765554443334456
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHhhh-hcCC-CCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 173 ILTALCDRLLDFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 173 Ii~~L~~rL~D~DEkVR~aaVkaI~~la~-~~l~-~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
+...+..-++|-.+.||.+|+.....+.- ..-. .+-..++..+-.-.-|+.+.||--.+.....+|...
T Consensus 277 v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 277 VLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred ccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 77888888899999999999888877654 2222 344455667778888899999998888888888865
No 144
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.89 E-value=1.9e+02 Score=39.76 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=85.1
Q ss_pred hhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCC-CchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHh
Q 000441 84 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 162 (1508)
Q Consensus 84 ~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g-s~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~ 162 (1508)
...+.++.--+.+|+.- ...-+|+=+.-+||+++..-. +.+.=..-......+.=..|-.|+||++.|-+.+.+|.
T Consensus 595 cl~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hccccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 34455555333333331 268899999999999998642 22222233344555566789999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHhhcC-CchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 163 TDPSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 163 ~~p~~~~~~eIi~~L~~rL~D-~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
+-....+++ ....+.+.| +|++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|
T Consensus 672 ~~~d~fde~---~~~~~~~~~l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 672 NGSDNFDEQ---TLVVEEEIDLDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccccchh---hhhhhhhhcchhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 743211111 112233344 4444444311 1111235678999999999999888888765555
Q ss_pred h
Q 000441 242 C 242 (1508)
Q Consensus 242 ~ 242 (1508)
.
T Consensus 735 ~ 735 (1387)
T KOG1517|consen 735 V 735 (1387)
T ss_pred H
Confidence 3
No 145
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=50.87 E-value=93 Score=36.49 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=92.7
Q ss_pred chhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC
Q 000441 87 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 166 (1508)
Q Consensus 87 P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~ 166 (1508)
|+-|...+-.|+. ++|+.++-.|+-++|..-+.+...-.-.+-..-.-...-.+|.++.||...+.+...+=.+...
T Consensus 11 ~~~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 AQELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4444444444443 6789999999999998654432111111111223456677889999998777776543222221
Q ss_pred CCChHHHHHHHHHhhcC--CchHHHHHHHHHHHHhhhhc-CCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhh
Q 000441 167 RADAPQILTALCDRLLD--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 243 (1508)
Q Consensus 167 ~~~~~eIi~~L~~rL~D--~DEkVR~aaVkaI~~la~~~-l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 243 (1508)
....+.-+..+++.... .|..|..++.+++..++... -+++=...+..+..-+.-=...+|..++..|..|=..
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--- 164 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--- 164 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC---
Confidence 12222333444444322 37788899999999887543 2222111222222223333556777777776655221
Q ss_pred hccCCCc-chhhc-ccchHHHhhhhccCCC
Q 000441 244 RNFNGSI-NQNEF-EWIPGKILRCLYDKDF 271 (1508)
Q Consensus 244 ~~~~~~~-~~~~~-~wIPskIL~~~Y~nD~ 271 (1508)
+. ..+.+ ...|+.++.+|..+..
T Consensus 165 -----p~~~~~Ll~~q~~~~~~~Lf~~~~~ 189 (254)
T PF04826_consen 165 -----PDMTRELLSAQVLSSFLSLFNSSES 189 (254)
T ss_pred -----HHHHHHHHhccchhHHHHHHccCCc
Confidence 11 11111 2467777766654433
No 146
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=49.88 E-value=1.3e+02 Score=36.34 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=76.9
Q ss_pred HHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHh
Q 000441 78 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 157 (1508)
Q Consensus 78 LI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~ 157 (1508)
|=..|.-+.|.+|++++|-||+| ..+.=-.+.++|-.+-..-+.. .-|..+|.+.+ .+|.+|...+.++
T Consensus 128 L~~~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l 196 (307)
T PF04118_consen 128 LGPALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYL 196 (307)
T ss_pred ccHHHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHH
Confidence 33467789999999999999985 3333334444555444433322 34678888888 6999999998887
Q ss_pred HHhHhcCC--------------CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 158 KSCLLTDP--------------SRADAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 158 ~~IL~~~p--------------~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
..-+-... -..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 197 LRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 76554311 012333567999999999999999998877765
No 147
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=49.39 E-value=1.1e+02 Score=37.16 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=89.7
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchh-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC
Q 000441 93 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 167 (1508)
Q Consensus 93 VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa-----~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~ 167 (1508)
-+|+|...|-++|.+.-+.||--+-+++|...++-. .---+-|-+||.-..---+..-++|+ |.|-.+.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWa------lTNiaSG 145 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWA------LTNIASG 145 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHH------HhhhccC
Confidence 458999999999999999999999999997532111 11124577777533222334444443 2221211
Q ss_pred --C-----ChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcC---CC------------------CCHHHH----HHH
Q 000441 168 --A-----DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL---NS------------------IPVETV----KLV 215 (1508)
Q Consensus 168 --~-----~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l---~~------------------Vs~elL----~~L 215 (1508)
. ....-+..|...|.+++..||-+||=|++.+|-.+. +. ...+++ ++|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 0 111346788899999999999999999998864221 01 112333 477
Q ss_pred HHHhccCCh----hHHHHHHHHHHHHHH
Q 000441 216 AERLRDKSV----LVKRYTMERLADIFR 239 (1508)
Q Consensus 216 aeR~RDKK~----~VR~eAm~~La~LY~ 239 (1508)
...||-|++ ++=..|+..|++|..
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KLiy 253 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKLIY 253 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHh
Confidence 778888876 445566777777544
No 148
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=48.98 E-value=1.1e+02 Score=41.32 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhh-hcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 237 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~-~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~L 237 (1508)
+++.-+..-..|+...||..|.+.+..+-. -+...+...++..+---..|-...||-.|+..++.+
T Consensus 596 ~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 596 DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 344444444555555555555555544433 222333333333333333455555555544444433
No 149
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=48.97 E-value=39 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.6
Q ss_pred cccccCCCCCCcccccCCCCCCCCC
Q 000441 1402 DEVDKMDSEEKPAEEVGSVPQDEKS 1426 (1508)
Q Consensus 1402 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1508)
++++..+|++. +.|-|-.||-.+.
T Consensus 292 ~e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 292 NEGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred ccccccccccc-cCCcccccccccc
Confidence 34455667777 5555555665553
No 150
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.35 E-value=1.5e+02 Score=36.13 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=96.7
Q ss_pred CchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhc--HHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc
Q 000441 86 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 163 (1508)
Q Consensus 86 ~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y--~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~ 163 (1508)
+-+++.- +|..-....+-+.+.|..|..-|-.+.-..+ -|... -.-|.--|+=.++.++.||......++.+..|
T Consensus 78 ~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN 154 (342)
T KOG2160|consen 78 ISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDID--NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN 154 (342)
T ss_pred HHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 3334444 5555566677788999999999876654443 12111 23588888888999999999999999999999
Q ss_pred CCCCCChHHHH-----HHHHHh-hcCCchHHHHHHHHHHHHhhhhcCC------CCCHHHHHHHHHHhcc--CChhHHHH
Q 000441 164 DPSRADAPQIL-----TALCDR-LLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRD--KSVLVKRY 229 (1508)
Q Consensus 164 ~p~~~~~~eIi-----~~L~~r-L~D~DEkVR~aaVkaI~~la~~~l~------~Vs~elL~~LaeR~RD--KK~~VR~e 229 (1508)
||.. ...++ ..|... -.|.+..||..|.-||+.+.....- .+++ +..|.+=+-. .....++.
T Consensus 155 NP~~--Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G--~~~L~~vl~~~~~~~~lkrK 230 (342)
T KOG2160|consen 155 NPKS--QEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG--YQVLRDVLQSNNTSVKLKRK 230 (342)
T ss_pred CHHH--HHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC--HHHHHHHHHcCCcchHHHHH
Confidence 9931 11222 122222 2899999999999999987654432 2222 2233444444 44566667
Q ss_pred HHHHHHHHHHHh
Q 000441 230 TMERLADIFRGC 241 (1508)
Q Consensus 230 Am~~La~LY~~~ 241 (1508)
|+..++.|-...
T Consensus 231 ~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 231 ALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHHHhh
Confidence 777777666654
No 151
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=38 Score=43.10 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=39.2
Q ss_pred hcCCChhHHHHHHHHhHHhHh-cCCCCCChHHHHH-HHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC
Q 000441 142 LTDRIVAVRMSVLEHVKSCLL-TDPSRADAPQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSI 207 (1508)
Q Consensus 142 ~~Dks~~VR~~wVe~~~~IL~-~~p~~~~~~eIi~-~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V 207 (1508)
.+|+++..|..=+-...-... +. ..-++. .|.--..|.++.||.|||-+++-+.|.+...+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GTg-----n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGTG-----NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcCC-----cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 368888888764333222121 11 113443 34445899999999999999998888776544
No 152
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.65 E-value=63 Score=41.98 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHHHHhhhcCCChh----------HHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc
Q 000441 135 FSEFLKRLTDRIVA----------VRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 203 (1508)
Q Consensus 135 w~~fL~R~~Dks~~----------VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~ 203 (1508)
|+.||++..+.... .=..+|+||-.++..+|+....+.|+.++-..+.|+..-||...|.+|..+...+
T Consensus 277 Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 277 YKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 45556555544332 2346899999999999988888899999999999999999999999998876644
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.62 E-value=1.2e+02 Score=40.18 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCch
Q 000441 108 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 186 (1508)
Q Consensus 108 ~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~-wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DE 186 (1508)
+|=+|+-+---||+..+ ...++..+.+ .|++|-+|.. |...+....-+-. -.-|-..|.--..|.++
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgn----nkair~lLh~aVsD~nD 569 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTGN----NKAIRRLLHVAVSDVND 569 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCc----hhhHHHhhcccccccch
Confidence 45555555445555432 1123333333 4667777765 3333322222211 11233444445667777
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCH-------------------------------HHHHHHHHHhccCChhHHHHHHHHHH
Q 000441 187 NVRKQVVAVICDVACHALNSIPV-------------------------------ETVKLVAERLRDKSVLVKRYTMERLA 235 (1508)
Q Consensus 187 kVR~aaVkaI~~la~~~l~~Vs~-------------------------------elL~~LaeR~RDKK~~VR~eAm~~La 235 (1508)
.||.+||-+|+-+.+.++..+|. +.+..|--.+.|+.-=||+-||.++|
T Consensus 570 DVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~a 649 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALA 649 (929)
T ss_pred HHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHH
Confidence 77777777777766666543321 33334445556666667777777776
Q ss_pred HHHHH
Q 000441 236 DIFRG 240 (1508)
Q Consensus 236 ~LY~~ 240 (1508)
-|--.
T Consensus 650 mIm~Q 654 (929)
T KOG2062|consen 650 MIMIQ 654 (929)
T ss_pred HHHHh
Confidence 66543
No 154
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.81 E-value=1e+03 Score=32.31 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=159.0
Q ss_pred CCChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCC
Q 000441 144 DRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS 223 (1508)
Q Consensus 144 Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK 223 (1508)
=++|-=++..+..+..++..++.. ...+.+.|..+|.--+|.|=.+|-.+|+.+.+.....+.+ .+..|.--+.--+
T Consensus 219 ~~~~~A~~~lir~~~~~l~~~~~~--~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~ 295 (865)
T KOG1078|consen 219 LKSPLAVCMLIRIASELLKENQQA--DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPK 295 (865)
T ss_pred ccchhHHHHHHHHHHHHhhhcccc--hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcH
Confidence 355556666677777777776432 2367789999999999999999999999999877765544 4455555666777
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhc-----cCCCCcchHHHHhhccCcCC-CCCHHHHH-H
Q 000441 224 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLY-----DKDFGSDTIESVLCGSLFPT-GFSVKDRV-R 296 (1508)
Q Consensus 224 ~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y-----~nD~e~~lVE~vL~e~LlP~-~~~~~~R~-~ 296 (1508)
+..|-.|+..|-++=-. +|..+-.|-- ++|.+ ..+-..--..|+-. .....+|. +
T Consensus 296 ~~lRfaAvRtLnkvAm~-----------------~P~~v~~cN~elE~lItd~N-rsIat~AITtLLKTG~e~sv~rLm~ 357 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMK-----------------HPQAVTVCNLDLESLITDSN-RSIATLAITTLLKTGTESSVDRLMK 357 (865)
T ss_pred HHHHHHHHHHHHHHHHh-----------------CCccccccchhHHhhhcccc-cchhHHHHHHHHHhcchhHHHHHHH
Confidence 88999998887655443 2333322210 12221 11111111111111 11122343 3
Q ss_pred HHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHH
Q 000441 297 HWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSL--RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENF 370 (1508)
Q Consensus 297 rll~l~~~LD~~----a~kaf~~il~~q~~l~~~~~~yL~l--~e~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L 370 (1508)
-+..+.+.+++. ...|..++...=.+-...|..||.- |+ .|| -+ -++.+..+|-.+...-||.
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~--eGg-~e-~K~aivd~Ii~iie~~pds------- 426 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE--EGG-FE-FKRAIVDAIIDIIEENPDS------- 426 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh--ccC-ch-HHHHHHHHHHHHHHhCcch-------
Confidence 333555555542 2234444444444455567777753 43 233 22 3334444444444555553
Q ss_pred HHHHhhhcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhhccccChHHHHHHHHHHHhh
Q 000441 371 LILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ 446 (1508)
Q Consensus 371 ~kFaklnD~RiykLLk~~idp~td~ktv~ka~kELlkrL~~~~~----~~d~l~~Ll~RsS~lifNks~V~~LL~~~~~~ 446 (1508)
+.+++-.|..++-|.+.+.-. -.++..||..+| ...++. .+||+-|+..-+-
T Consensus 427 ------Ke~~L~~LCefIEDce~~~i~-----~rILhlLG~EgP~a~~Pskyir--------~iyNRviLEn~iv----- 482 (865)
T KOG1078|consen 427 ------KERGLEHLCEFIEDCEFTQIA-----VRILHLLGKEGPKAPNPSKYIR--------FIYNRVILENAIV----- 482 (865)
T ss_pred ------hhHHHHHHHHHHHhccchHHH-----HHHHHHHhccCCCCCCcchhhH--------HHhhhhhhhhhhh-----
Confidence 455666666777766654433 347777775432 111222 2566655544332
Q ss_pred cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchH
Q 000441 447 KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKE 493 (1508)
Q Consensus 447 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e 493 (1508)
...|...|-.|+..+|.+..+-.--|...+.+.++.+.+
T Consensus 483 --------RaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRd 521 (865)
T KOG1078|consen 483 --------RAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRD 521 (865)
T ss_pred --------HHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHH
Confidence 233445666677777887777777777888887654433
No 155
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.79 E-value=1.2e+03 Score=33.07 Aligned_cols=177 Identities=17% Similarity=0.203 Sum_probs=109.4
Q ss_pred HHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCch-hhhh--------hhhhhhhcccCCChHHHHHHHHHHHHHhcCCC
Q 000441 54 IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSG--------VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 124 (1508)
Q Consensus 54 I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~-lL~s--------VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g 124 (1508)
-..||...|..- +....-.|+.=|.+.+|. ||.+ ..|.|. -.+.|-.++..|...|+.++-.++
T Consensus 55 ~veyf~~lmt~~-----e~~s~~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~--~~stn~svlr~~iscL~~lLraQd 127 (1176)
T KOG1248|consen 55 DVEYFLALMTPI-----EGASSAYLLVLILKYVPSPVLQAKFSDTLNILAPFLT--AESTNGSVLRLAISCLEDLLRAQD 127 (1176)
T ss_pred HhHHHHHhhhhh-----hhhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHHcc
Confidence 346777766531 111112344455688888 5544 334444 336789999999999999999888
Q ss_pred CchhhhcHHHHHHHH---hhhcCCChhHHHHHHHHhHHhHhcCCCC---------CChHHHHHHHHHhhcCCchHHHHHH
Q 000441 125 SANNEQFHSVFSEFL---KRLTDRIVAVRMSVLEHVKSCLLTDPSR---------ADAPQILTALCDRLLDFDENVRKQV 192 (1508)
Q Consensus 125 s~fa~~y~~~w~~fL---~R~~Dks~~VR~~wVe~~~~IL~~~p~~---------~~~~eIi~~L~~rL~D~DEkVR~aa 192 (1508)
...+. |+.+.+.+- -=..+..|-||..-...+..+|.+.|.. ..+...+..|...+. +++. ..+
T Consensus 128 ~~aW~-~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~-~a~~--t~v 203 (1176)
T KOG1248|consen 128 ASAWS-YSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLG-SAEN--TTV 203 (1176)
T ss_pred hhhhc-cccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhc-hHHH--HHH
Confidence 76666 877777543 3456889999999999999999876521 122334444444444 1111 222
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHH----hccCChhHHHHHHHHHHHHHHHhh
Q 000441 193 VAVICDVACHALNSIPVETVKLVAER----LRDKSVLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 193 VkaI~~la~~~l~~Vs~elL~~LaeR----~RDKK~~VR~eAm~~La~LY~~~~ 242 (1508)
+..++-+ ...+...|..+++.|.+= |.--...|+..+++.|..+|....
T Consensus 204 ~~~L~Ll-~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~ 256 (1176)
T KOG1248|consen 204 LRSLMLL-RDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHP 256 (1176)
T ss_pred HHHHHHH-HHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCC
Confidence 2222221 112234677776654443 345567899999999999998763
No 156
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.45 E-value=2.3e+02 Score=37.02 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=89.8
Q ss_pred hcccCCChHHHHHHHHHHHHHhcCC---C-CchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC---CChH
Q 000441 99 GELLTDQLDTRLKAVGLVGDLFAVP---G-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAP 171 (1508)
Q Consensus 99 ~EL~aed~~~RllAT~lLG~Mfs~~---g-s~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~---~~~~ 171 (1508)
.-|.+.-+.+|..|..+.|-+.--. | ......-..+.-+.||- --|+|==.++.++..|...|--+ .-++
T Consensus 611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge---~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~ 687 (975)
T COG5181 611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGE---DYPEVLGSILKAICSIYSVHRFRSMQPPIS 687 (975)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc---ccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence 4578899999999999998765322 1 00111111111122221 23344444455555555444211 1366
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHH-HHH---HHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TVK---LVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~e-lL~---~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
+|+..|.--|..-.+||-..+|+.++.++...+..++.. -++ .|.+-++--+..+|+.|..++|-|-+.
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 888888888999999999999999999999999888763 333 445666667778999999988876553
No 157
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.45 E-value=14 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=18.8
Q ss_pred CCChhhhhhhhHHHHHHHHHhhhc
Q 000441 671 ESSSVDKAHLRLASAKAVLRLSRQ 694 (1508)
Q Consensus 671 ~tp~~~ksrLRL~Aa~~lLKLa~~ 694 (1508)
..|.+..--+|-.|.+.|+-|||.
T Consensus 751 k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 751 KNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred cCCCCcHHHHHHHHHHHHhccccC
Confidence 346667777899999999999885
No 158
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.40 E-value=3.8e+02 Score=31.86 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHhccCC--hhHHHHHHHHHHHHHHHhh
Q 000441 208 PVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 208 s~elL~~LaeR~RDKK--~~VR~eAm~~La~LY~~~~ 242 (1508)
+...+-.|.+.++|.+ +=||.+|...||.|=...|
T Consensus 216 s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 216 SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4444667788888887 5799999999998876654
No 159
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=42.07 E-value=38 Score=30.27 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.2
Q ss_pred cCCeEEEecCCCCceEEEEEEeecCCCC--eeEEEccCCc---ceeeec
Q 000441 1210 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1253 (1508)
Q Consensus 1210 vG~rikV~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDGd---~E~l~L 1253 (1508)
||.+|-+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 899999999999988664 5677886444 445543
No 160
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=41.85 E-value=5.1e+02 Score=34.10 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHhcCCCC-h-HHHHHHHHHHHHhhhhhHHHHHHHHHh---hhcCCCCCCC----CchhHHHHHHH-HHh
Q 000441 15 IQEDLLVILLSALGRNKN-D-TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPGH----SHIDYHEVIYD-VYR 84 (1508)
Q Consensus 15 Vp~~vLDvIL~qf~~~ks-~-~Ay~LA~~Ic~~~~dkLq~~I~qyF~~---vi~~d~~~~~----~~~kaHeLI~e-L~~ 84 (1508)
=|++||+++|++|.-.-. . -.-.+|..|. .-.|.-|+= +|.+=..|.. -..++.-..+| +.+
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iV--------ae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~ 833 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIV--------AEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ 833 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhh--------HhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH
Confidence 489999999999842211 0 1111222222 122333442 1222122222 23455443333 678
Q ss_pred hCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCC-CCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhc
Q 000441 85 CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 163 (1508)
Q Consensus 85 ~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~-gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~ 163 (1508)
.+=+-+.++.|.||+-|...|.--|+.|..++-.+--.. |.--....=.+.+-..--..|.+|.|=..+.++.-.+-..
T Consensus 834 ~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~ 913 (975)
T COG5181 834 ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATV 913 (975)
T ss_pred HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999886543 2211112222222222334577888877766665443221
Q ss_pred CCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 164 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 164 ~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
-. ..-+.+++..-|.-|--+||.+-+.++..
T Consensus 914 lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~ 944 (975)
T COG5181 914 LG----SGAMMKYVQQGLFHPSSTVRKRYWTVYNI 944 (975)
T ss_pred hc----cHHHHHHHHHhccCchHHHHHHHHHHHhh
Confidence 11 23578999999999999999997766654
No 161
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=40.46 E-value=8.5e+02 Score=30.61 Aligned_cols=296 Identities=11% Similarity=0.148 Sum_probs=134.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhc
Q 000441 42 VIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 121 (1508)
Q Consensus 42 Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs 121 (1508)
++....|+. .+|..| -.||-.....+++..=+-.+|-.-++.-|++--..|----+-...+|+.+|..|.+-|-..-.
T Consensus 13 ~l~~a~dk~-q~v~~y-~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 13 ILSEATDKS-QHVDDY-EGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred HHHhhchhh-hhHHHH-HHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhcc
Confidence 444555665 455554 334432222233333367788888999999887766332222335689999999988764333
Q ss_pred CCCCchhhhcHH--------HHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCC----CCChHHHHHHHHHhhcCCchHHH
Q 000441 122 VPGSANNEQFHS--------VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS----RADAPQILTALCDRLLDFDENVR 189 (1508)
Q Consensus 122 ~~gs~fa~~y~~--------~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~----~~~~~eIi~~L~~rL~D~DEkVR 189 (1508)
+ + .+....+. .....++...=.+-.||..++.++..=|.+-+. .+.+..|++.+.+-|
T Consensus 91 ~-d-~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-------- 160 (460)
T KOG2213|consen 91 G-D-ALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-------- 160 (460)
T ss_pred C-c-hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH--------
Confidence 2 1 12221111 111222222223455666666555554443321 011112223333333
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhh
Q 000441 190 KQVVAVICDVACHALNSIPVETVKLVAERLRDKSV---LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL 266 (1508)
Q Consensus 190 ~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~---~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~ 266 (1508)
..|..+-+..+-.-+.-=|. .-=.+-|..|+.....-..-..-+...... -++++.|.
T Consensus 161 ---------------~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~----VdRfisCl 221 (460)
T KOG2213|consen 161 ---------------EDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADY----VDRFISCL 221 (460)
T ss_pred ---------------HhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHH----HHHHHHHH
Confidence 33333222111000000000 000111333443333221100000001111 13344442
Q ss_pred ------ccCC-CCcchHHHHhhccCcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000441 267 ------YDKD-FGSDTIESVLCGSLFPTGFS--VKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 337 (1508)
Q Consensus 267 ------Y~nD-~e~~lVE~vL~e~LlP~~~~--~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e~~ 337 (1508)
|..+ +....|+.+ ++.++|..++ +++|--.+|.++.-+... ..+++..+.++..++-+++-...-
T Consensus 222 ~~AvPfFargapSskf~~y~-n~~~ip~~fdkl~e~rkL~lLK~lAEMss~-----ttaq~a~q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 222 LMAVPFFARGAPSSKFVEYL-NKHIIPHHFDKLTEERKLDLLKALAEMSSY-----TTAQAARQMLPSIVELLKEYMPAP 295 (460)
T ss_pred HHhhhhhhcCCchhHHHHHH-HhhhcccccccchHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHHHHHHhcccC
Confidence 2322 222355554 7788997554 578888888877766553 233444444444433333222222
Q ss_pred cCCCcHH--HHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 000441 338 QDGDAPE--IQKKILFCFRVMSRSFAEPAKAEENFLILD 374 (1508)
Q Consensus 338 n~gd~~e--i~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFa 374 (1508)
+.+++.. -...+....++|..-.||.+++..+-+++-
T Consensus 296 kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 296 KTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLK 334 (460)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhc
Confidence 2221111 223566777888888999999977765554
No 162
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.57 E-value=1e+02 Score=37.37 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=57.3
Q ss_pred hCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhc-------HHHHHHHHhhhc-CCCh---------
Q 000441 85 CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-------HSVFSEFLKRLT-DRIV--------- 147 (1508)
Q Consensus 85 ~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y-------~~~w~~fL~R~~-Dks~--------- 147 (1508)
+|=.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++.. ...+..++.+.. +...
T Consensus 49 l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 49 LIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 35567777788999999999999999999999999994443333221 223344443332 3333
Q ss_pred hHHHHHHHHhHHhHhcCC
Q 000441 148 AVRMSVLEHVKSCLLTDP 165 (1508)
Q Consensus 148 ~VR~~wVe~~~~IL~~~p 165 (1508)
.||..+|.++-.+|...+
T Consensus 129 siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred CHHHHHHHHHHHHHccCC
Confidence 999999999999998754
No 163
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.38 E-value=18 Score=47.71 Aligned_cols=19 Identities=37% Similarity=0.274 Sum_probs=9.4
Q ss_pred hcccccccCccccccCCCC
Q 000441 1013 EINLDNLGVLNKFESSNGH 1031 (1508)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~ 1031 (1508)
||-+=|+-.-..-++-|+|
T Consensus 1124 eik~~nv~sG~~e~s~ncH 1142 (1516)
T KOG1832|consen 1124 EIKIFNVSSGSMEESVNCH 1142 (1516)
T ss_pred eEEEEEccCcccccccccc
Confidence 3444444444455555555
No 164
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=37.93 E-value=1.6e+02 Score=34.11 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHHHhcCC-CCchhhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHhHhc---CC-CCCChHH
Q 000441 103 TDQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLLT---DP-SRADAPQ 172 (1508)
Q Consensus 103 aed~~~RllAT~lLG~Mfs~~-gs~fa~~y~~-~w~~fL~R~~Dk----s~~VR~~wVe~~~~IL~~---~p-~~~~~~e 172 (1508)
......++++.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++.+.+-++-.. .+ ..+...+
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 378999999999999999975 4455566666 333344444443 688999998887765222 22 2233445
Q ss_pred HHHHHHHhhc-C-CchHHHHHHHHHHHHhhh
Q 000441 173 ILTALCDRLL-D-FDENVRKQVVAVICDVAC 201 (1508)
Q Consensus 173 Ii~~L~~rL~-D-~DEkVR~aaVkaI~~la~ 201 (1508)
++..+..-+. . .|+.+..-.+.+++.+..
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 6777666332 2 577777777888888773
No 165
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=1.8e+02 Score=35.27 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=92.5
Q ss_pred hhhhhhcccCC-------ChHHHH---HHHHHHHHHhcCC-CCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHh
Q 000441 94 VPYLTGELLTD-------QLDTRL---KAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 162 (1508)
Q Consensus 94 IPqLe~EL~ae-------d~~~Rl---lAT~lLG~Mfs~~-gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~ 162 (1508)
+||+-.+|+.+ |+.-|- +.+..|-++|... |+.++..|....+.=|. .| +..|.+..++.++.||.
T Consensus 35 LpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLi--ad-dasVKiLackqigcilE 111 (524)
T KOG4413|consen 35 LPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLI--AD-DASVKILACKQIGCILE 111 (524)
T ss_pred hHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhccc--CC-cchhhhhhHhhhhHHHh
Confidence 45555555544 344444 4888999999765 67788877776665443 33 67788888888887776
Q ss_pred cCCCCCC--------hHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhh--cCCC-CCHHH-----HHHHHHHhccCChhH
Q 000441 163 TDPSRAD--------APQILTALCDRLLDFDENVRKQVVAVICDVACH--ALNS-IPVET-----VKLVAERLRDKSVLV 226 (1508)
Q Consensus 163 ~~p~~~~--------~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~--~l~~-Vs~el-----L~~LaeR~RDKK~~V 226 (1508)
+. +++. -.+|.+.+..++.-.|+.|-.||++.|..++.. .+.. .+.++ +..|+-||-| -+
T Consensus 112 dc-DtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---ia 187 (524)
T KOG4413|consen 112 DC-DTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IA 187 (524)
T ss_pred cC-chhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HH
Confidence 53 2211 225667888899999999999999999998763 2322 23332 4567777755 46
Q ss_pred HHHHHHHHHHHHHH
Q 000441 227 KRYTMERLADIFRG 240 (1508)
Q Consensus 227 R~eAm~~La~LY~~ 240 (1508)
|...++.+-+||..
T Consensus 188 RvRVleLIieifSi 201 (524)
T KOG4413|consen 188 RVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666666664
No 166
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=37.45 E-value=1.6e+02 Score=35.58 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=67.6
Q ss_pred HHHHHHHhHHhHhcCCCCCChHHHHHHHHHhh-cCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHH
Q 000441 150 RMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKR 228 (1508)
Q Consensus 150 R~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL-~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~ 228 (1508)
|+..++....+-. ......|+.+|..-+ .+..|.+..+.+.+++.-...--..+|..++..+..=+.|||+.||+
T Consensus 4 r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~ 79 (339)
T PF12074_consen 4 RVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRR 79 (339)
T ss_pred HHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHH
Confidence 5555555444332 235678888888876 56999999999999987443333678999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 000441 229 YTMERLADIFR 239 (1508)
Q Consensus 229 eAm~~La~LY~ 239 (1508)
--+..+|.++.
T Consensus 80 ~w~~~~~~~~~ 90 (339)
T PF12074_consen 80 AWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHh
Confidence 99999999877
No 167
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.01 E-value=3.1e+02 Score=32.35 Aligned_cols=124 Identities=9% Similarity=0.170 Sum_probs=81.8
Q ss_pred cCccHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhhhhHHHHHHHHHhhhc----CCCCCCC--CchhHHHHH---
Q 000441 13 EDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVSSMS----GDSRPGH--SHIDYHEVI--- 79 (1508)
Q Consensus 13 ~~Vp~~vLDvIL~qf~~~ks~----~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~----~d~~~~~--~~~kaHeLI--- 79 (1508)
..+..+.+..++..+.-+|-| -+++|...|+..-. +..++..+|--+.- .-..|.+ ..+..-+|.
T Consensus 118 ~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L 195 (262)
T PF14500_consen 118 QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRAL 195 (262)
T ss_pred HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHH
Confidence 345566666666655444444 88889888887776 47777777765431 1001111 123333333
Q ss_pred HHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCC-chhhhcHHHHHHH
Q 000441 80 YDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEF 138 (1508)
Q Consensus 80 ~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs-~fa~~y~~~w~~f 138 (1508)
++-....|..-.-++|.|-+.|.++...+++.+.++|...+..-|. .+.....++|.+.
T Consensus 196 ~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 196 RNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3333456777778999999999999999999999999999986553 3455557778754
No 168
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=36.08 E-value=1.8e+03 Score=33.24 Aligned_cols=372 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCh-------HHHHHHHHHHHHhhhhhH---HHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCchh
Q 000441 20 LVILLSALGRNKND-------TARRLAMNVIEQCAGKLE---AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI 89 (1508)
Q Consensus 20 LDvIL~qf~~~ks~-------~Ay~LA~~Ic~~~~dkLq---~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~l 89 (1508)
++.||.-|...... .||+....||......|. +..-+.+.+++..-............-|.-||.|++.+
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Q ss_pred hhh----------------------------------------hhhhhhhc---ccCCChHHHHHHHHHHHHHhcCCCCc
Q 000441 90 LSG----------------------------------------VVPYLTGE---LLTDQLDTRLKAVGLVGDLFAVPGSA 126 (1508)
Q Consensus 90 L~s----------------------------------------VIPqLe~E---L~aed~~~RllAT~lLG~Mfs~~gs~ 126 (1508)
+.. .+|.|..- ...+..++|-.|.++|.++|...|..
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Q ss_pred hhhhcHHHHHHHHhh-------------------------------hcCCChhHHHHHHHHhHHhHhcCCCC-----CCh
Q 000441 127 NNEQFHSVFSEFLKR-------------------------------LTDRIVAVRMSVLEHVKSCLLTDPSR-----ADA 170 (1508)
Q Consensus 127 fa~~y~~~w~~fL~R-------------------------------~~Dks~~VR~~wVe~~~~IL~~~p~~-----~~~ 170 (1508)
|. +..|..-+.+ -.|.++=+...|+.+...++.--... ...
T Consensus 1382 Fs---~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1382 FS---LPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred CC---HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH---------------------------------
Q 000441 171 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE--------------------------------- 217 (1508)
Q Consensus 171 ~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~Lae--------------------------------- 217 (1508)
.+++..|..|..-+.|.+=.-.+.++..+....-...+++....+.+
T Consensus 1459 ~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~ 1538 (1780)
T PLN03076 1459 KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENA 1538 (1780)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCchhhcccccccccccccccccc
Q ss_pred ----------------HhccCChhHHHHH--------HHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhc------
Q 000441 218 ----------------RLRDKSVLVKRYT--------MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLY------ 267 (1508)
Q Consensus 218 ----------------R~RDKK~~VR~eA--------m~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y------ 267 (1508)
|.+=+..-+|..+ |+++..||..++..+. ..++--|-+-+...|-
T Consensus 1539 ~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~-----~~~l~~l~~~L~~s~~fA~~fN 1613 (1780)
T PLN03076 1539 EAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLS-----AKNTLVLFDALHTVASHAHKIN 1613 (1780)
T ss_pred cccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -cCCCCcchHHHHhhccCcCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 000441 268 -DKDFGSDTIESVLCGSLFPTGFSVKDR------VRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQ----- 335 (1508)
Q Consensus 268 -~nD~e~~lVE~vL~e~LlP~~~~~~~R------~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e----- 335 (1508)
+.+.+..+...-+-..+=+.++=-.+. +.-|.++|..-++.. .--......-.-+...++.|+.+-.
T Consensus 1614 ~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~-~~~~~~~~l~~~c~~il~~y~~l~~~~~~~ 1692 (1780)
T PLN03076 1614 SDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLA-KEAEVESRLVELCEEVLQFYIETSTAGQDS 1692 (1780)
T ss_pred CcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q ss_pred ---------------hhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhcHHHHHHHHHHhcCCCCHHHHHH
Q 000441 336 ---------------MHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFT 400 (1508)
Q Consensus 336 ---------------~~n~gd~~ei~~kL~~~I~~Ls~~fPDp~Ka~e~L~kFaklnD~RiykLLk~~idp~td~ktv~k 400 (1508)
..+..+-..-+--+..++..++.+=++..+. +=+.+|-++-.++.-+.--.+++.
T Consensus 1693 ~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~----------~~~~~y~l~~~l~~~e~~~~e~r~ 1762 (1780)
T PLN03076 1693 EDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEK----------NLVRFFPLLAGLISCEHGSNEVQV 1762 (1780)
T ss_pred cccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHH----------HHHHHHHHHHHHHhccCCCHHHHH
Q ss_pred HHHHHHH-Hhc
Q 000441 401 GRDDLLK-ILG 410 (1508)
Q Consensus 401 a~kELlk-rL~ 410 (1508)
+...++. |+|
T Consensus 1763 ~l~~~~~~rvg 1773 (1780)
T PLN03076 1763 ALSDMLSSWVG 1773 (1780)
T ss_pred HHHHHHHHHhh
No 169
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=36.02 E-value=1.1e+02 Score=32.83 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHHHHHHHHHhhcchh
Q 000441 456 QSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGTIR 507 (1508)
Q Consensus 456 ~~a~eLL~~IS~~~P~lFk~~v------~~L~~lL~~-~n~~~~e~~LkaLa~~~k~~~ 507 (1508)
-.|+.||..+.+.|...|...+ ++|.+++.. .++.+...+|..+-.|+..|+
T Consensus 55 l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 55 LRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4467777778888877777653 677777777 355677888888888886654
No 170
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.08 E-value=1e+03 Score=29.63 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHH-HHHhh------ccccchHHHHHHHHHhh
Q 000441 453 QFMQSCMDILGILARFSPLLLGGTEEELV-NLLKE------ENEIIKEGILHVLAKAG 503 (1508)
Q Consensus 453 ~~~~~a~eLL~~IS~~~P~lFk~~v~~L~-~lL~~------~n~~~~e~~LkaLa~~~ 503 (1508)
+....|.++|..+++.++.....-+...+ .+|.. .|....+++|..+..++
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHH
Confidence 34567899999999887665443333322 23331 23456778888877554
No 171
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.58 E-value=66 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhh
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVA 200 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la 200 (1508)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998765
No 172
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=33.41 E-value=79 Score=41.51 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=96.3
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCC
Q 000441 88 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 167 (1508)
Q Consensus 88 ~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~ 167 (1508)
+.-..++|.|-.-+...|.++|+.-.+-+-+.+..-. =-+....+|-.+..=|+|.++.||..-|.+...+.---..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 3445577777777888888888876665554443211 11234567888999999999999999988876654432233
Q ss_pred CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-hccCChhHHHHHHHHHHH
Q 000441 168 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLAD 236 (1508)
Q Consensus 168 ~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR-~RDKK~~VR~eAm~~La~ 236 (1508)
.+-.|++++|..--.|.+-.+|-.++.+++.++...--.+-..+|-.---| +||-=..=|..++..|+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 455689999999888999999999888888776542111122222222233 566656666666555543
No 173
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=84 Score=41.49 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-hccCChhHHHHHHHHHHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLADIF 238 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR-~RDKK~~VR~eAm~~La~LY 238 (1508)
+--..+.+.+.|-|.-.|..-+-++.-.-+-+- ....++.|..= +-|=+-.||+.|..+||-+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg---nnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG---NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC---chhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 344566677899999999987766654222111 11223333333 56778899999999998743
No 174
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.85 E-value=1.4e+03 Score=31.03 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=81.6
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhh---hcCCChhHHHH
Q 000441 76 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR---LTDRIVAVRMS 152 (1508)
Q Consensus 76 HeLI~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R---~~Dks~~VR~~ 152 (1508)
-+.|++|....-.+|+..+--+=.-|.+.|.++|.++..+.-++.+... +-+--.-+=.++.+- -.|..-.-|..
T Consensus 301 ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--vediv~~Lkke~~kT~~~e~d~~~~yRql 378 (948)
T KOG1058|consen 301 LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VEDIVQFLKKEVMKTHNEESDDNGKYRQL 378 (948)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHHhccccccccchHHHHH
Confidence 4566666655455555533333344778999999999999999988763 221111111111111 24556677999
Q ss_pred HHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 000441 153 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 198 (1508)
Q Consensus 153 wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~ 198 (1508)
.++.+..|-.+-|+ .+..++..|.+-|-|+.+.-=..++..|.+
T Consensus 379 Liktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 379 LIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 99999999999886 477999999999999999987777766655
No 175
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=4.5e+02 Score=32.33 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=64.3
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCCCchhh-------hcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHH
Q 000441 100 ELLTDQLDTRLKAVGLVGDLFAVPGSANNE-------QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 172 (1508)
Q Consensus 100 EL~aed~~~RllAT~lLG~Mfs~~gs~fa~-------~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~e 172 (1508)
.|.+.+..+|-.|+.+||..+.... +++ .-+.+...+- .|.+..+|.+.+=++...|.+++.. ..+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP--~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~ 204 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNP--KSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDE 204 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHH
Confidence 7788999999999999999998642 111 1234444443 6778899999999999999998732 112
Q ss_pred H-----HHHHHHhhcCCchHHHHH--HHHHHHHhhh
Q 000441 173 I-----LTALCDRLLDFDENVRKQ--VVAVICDVAC 201 (1508)
Q Consensus 173 I-----i~~L~~rL~D~DEkVR~a--aVkaI~~la~ 201 (1508)
. +..|...|...+..||+. |+--|..+..
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 2 357888888855555555 4444444433
No 176
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.35 E-value=6.3e+02 Score=29.10 Aligned_cols=133 Identities=14% Similarity=0.183 Sum_probs=83.1
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHh------hhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHH
Q 000441 102 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK------RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 175 (1508)
Q Consensus 102 ~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~------R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~ 175 (1508)
.......+..+.+++.+|.......| ..-..+...+.. +-.|....+.++....+..|...+|+ ...+++.
T Consensus 48 ~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~ 124 (234)
T PF12530_consen 48 EQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLP 124 (234)
T ss_pred cCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHH
Confidence 34555557788888888877654333 111111222111 23455666667777788888888887 4679999
Q ss_pred HHHHhh-cCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 176 ALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 176 ~L~~rL-~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
.|...| .+.++.++.-+++++..+-...+.. -..+++.|.-++ ...-|-.-+..|+.++...
T Consensus 125 ~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 125 LLSGCLNQSCDEVAQALALEALAPLCEAEVVD-FYSAWKVLQKKL---SLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHhc---CCccchHHHHHHHHHHHHh
Confidence 999999 8999999999999988876433221 123345555555 2233444566677777644
No 177
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.00 E-value=1.1e+02 Score=33.17 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=73.6
Q ss_pred HHHHHHHhcC-CCCh----HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHhhCchhhhh--
Q 000441 20 LVILLSALGR-NKND----TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-- 92 (1508)
Q Consensus 20 LDvIL~qf~~-~ks~----~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~~~~P~lL~s-- 92 (1508)
+++||..|.. .... .|+-+-..+.....+.....+..||.+.+.+. ..+....+..++-.|+.+.|++-..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG--EMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc--cchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567766653 2221 34433333458888888999999999988543 2236777889999999999988554
Q ss_pred ----hhhhhhhccc--CCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhc
Q 000441 93 ----VVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 143 (1508)
Q Consensus 93 ----VIPqLe~EL~--aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~ 143 (1508)
+++.|-.... .++...-..|.++|.---... +-...-..-+..||+...
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNYVSWLKELY 137 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHCHHHHHHHT
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHH
Confidence 4445555555 667777777777665433322 122233445566666665
No 178
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.86 E-value=4e+02 Score=27.94 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=58.5
Q ss_pred HhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc---CC-CC-CHHHHHHHHHHhccC---ChhHHHHH
Q 000441 159 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LN-SI-PVETVKLVAERLRDK---SVLVKRYT 230 (1508)
Q Consensus 159 ~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~---l~-~V-s~elL~~LaeR~RDK---K~~VR~eA 230 (1508)
.++...+ ....+.+.+|.+||...+.+|.+-|+..+..+.... |+ .| +.+.|..|...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3444443 346799999999999999999999999998887644 32 22 446676676666664 56899998
Q ss_pred HHHHHHHHHHh
Q 000441 231 MERLADIFRGC 241 (1508)
Q Consensus 231 m~~La~LY~~~ 241 (1508)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88776655533
No 179
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=1e+02 Score=42.28 Aligned_cols=8 Identities=25% Similarity=0.518 Sum_probs=4.5
Q ss_pred cccccccc
Q 000441 1297 RQNKKSMK 1304 (1508)
Q Consensus 1297 ~~~~~~~~ 1304 (1508)
++|||-..
T Consensus 1631 krskkeer 1638 (3015)
T KOG0943|consen 1631 KRSKKEER 1638 (3015)
T ss_pred hhhhhhhc
Confidence 45566555
No 180
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=1e+03 Score=33.13 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHhhhcCC---CCCCCC-------chhHHHHHHHHHhhCc--hhhhh-hhhhhhh
Q 000441 34 TARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGD---SRPGHS-------HIDYHEVIYDVYRCSP--QILSG-VVPYLTG 99 (1508)
Q Consensus 34 ~Ay~LA~~Ic~~~-~dkLq~~I~qyF~~vi~~d---~~~~~~-------~~kaHeLI~eL~~~~P--~lL~s-VIPqLe~ 99 (1508)
+|-.+--.+|.+= ...++..+ .|..+++.+- +.+.+. +.-.-.|..-|-+-+| +.+-. +++++=.
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k~l-~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPKIL-SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhhHH-HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 6666666666665 56666655 6788887632 111111 1112345555667777 44444 5566666
Q ss_pred cccCCChHHHHHHHHHHHHHhcCC---CCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCC
Q 000441 100 ELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 165 (1508)
Q Consensus 100 EL~aed~~~RllAT~lLG~Mfs~~---gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p 165 (1508)
++++.--.+|-.|.-+++..=+.. ..++.+.+..+.++++. |.+-+||+..+=+...++.+.+
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhhHHHHHHHHHHhcch
Confidence 788899999999999999654221 24688888888888875 8999999999999888777765
No 181
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=29.58 E-value=90 Score=33.13 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=40.2
Q ss_pred CCceEEEEEEeecCCCCeeEEEccCCcceeeecCcceEEEecCCCCCCcccc
Q 000441 1221 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1272 (1508)
Q Consensus 1221 D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~L~~e~~~~~~~~~~~~k~~~ 1272 (1508)
+..||+|++.+.+....+..|.++||. ..+.++.++.++-...++.+.+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999888778999999999 4556666888877777766665
No 182
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.35 E-value=1e+02 Score=32.34 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc---cccchHHHHHHHHHhh
Q 000441 433 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE---NEIIKEGILHVLAKAG 503 (1508)
Q Consensus 433 ks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~L~~lL~~~---n~~~~e~~LkaLa~~~ 503 (1508)
++.+..|.+++... +....-.|+.||..+.+.|...|...+ .+|++++... ++.+...+|..+..|+
T Consensus 36 k~a~raL~krl~~~----n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYG----NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 44455555555321 222345678899999999988887654 4677777753 3457788999999888
Q ss_pred cchhh
Q 000441 504 GTIRE 508 (1508)
Q Consensus 504 k~~~e 508 (1508)
..|+.
T Consensus 112 ~~f~~ 116 (133)
T cd03561 112 ESFGG 116 (133)
T ss_pred HHhcC
Confidence 76654
No 183
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=29.27 E-value=4.4e+02 Score=32.76 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=80.3
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHhHhcCCC-C
Q 000441 93 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPS-R 167 (1508)
Q Consensus 93 VIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~-w~~fL~R~~Dks~---~VR~~wVe~~~~IL~~~p~-~ 167 (1508)
.++.+..-|.+++-.+|..|-+.+=-++.... +.+..-.+ -..|+-|.-|+.- .=|.+.++.+..++.-.-. .
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 44444446777889999999999999998763 22222111 2356666666644 3478888888888876321 1
Q ss_pred CChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC
Q 000441 168 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 207 (1508)
Q Consensus 168 ~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V 207 (1508)
..-.-++.+|....-++|++.|..+++.+|+++..++..|
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv 143 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV 143 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH
Confidence 2334677888888899999999999999999999887643
No 184
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.15 E-value=1.8e+03 Score=30.97 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=61.9
Q ss_pred cCCchHHHHHHHHHHHHhhh-hcCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhhhccC-CC--c---chhh
Q 000441 182 LDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-GS--I---NQNE 254 (1508)
Q Consensus 182 ~D~DEkVR~aaVkaI~~la~-~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~-~~--~---~~~~ 254 (1508)
.||+|=||.- +.+ .+...=....+..+..-++-|+..+=.-.|..+..|+..|-..... .+ . +--.
T Consensus 369 ~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~ 441 (1010)
T KOG1991|consen 369 EDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRM 441 (1010)
T ss_pred cCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHH
Confidence 4677777776 221 2222212233555566666665666667788888888876543211 11 1 1223
Q ss_pred cccchHHHhhhhccCCCCcchHHHHhhccCcCCCCCH----HHHHHHHHHHHhcCC
Q 000441 255 FEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRVRHWVRIFSGFD 306 (1508)
Q Consensus 255 ~~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~----~~R~~rll~l~~~LD 306 (1508)
++.|.+.|+. +.+=-..+|..|..+++|.=.++ ..|+--.+.-|+.+|
T Consensus 442 vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d 493 (1010)
T KOG1991|consen 442 VGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSID 493 (1010)
T ss_pred HHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc
Confidence 5666655543 22212468888888888863333 355555556666555
No 185
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=29.00 E-value=6.4e+02 Score=33.08 Aligned_cols=91 Identities=9% Similarity=0.130 Sum_probs=54.0
Q ss_pred chHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 000441 274 DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCF 353 (1508)
Q Consensus 274 ~lVE~vL~e~LlP~~~~~~~R~~rll~l~~~LD~~a~kaf~~il~~q~~l~~~~~~yL~l~e~~n~gd~~ei~~kL~~~I 353 (1508)
..++.|+.+ .++.|.-.+=+|...+++.+-|-...+ .-+-.+|..||..|.+ .+...-|.-+.
T Consensus 285 ~Tl~kil~~-------~pekk~~I~~~l~~~I~~v~eKg~v~~----tivHk~mlEy~~~ade------~e~~e~l~ll~ 347 (652)
T KOG2050|consen 285 KTLDKILAE-------APEKKASILRHLKAIITPVAEKGSVDH----TIVHKLMLEYLTIADE------EEKSELLELLK 347 (652)
T ss_pred ccHHHHHHh-------ChHhHHHHHHHHHHHhHHHhhcchhHH----HHHHHHHHHHHHhCCH------HHHHHHHHHHH
Confidence 367777664 456677766677777777665544432 3366789999999853 23333333333
Q ss_pred HHHh--hhcCCchhHHHHHHHHHhhhcHHH
Q 000441 354 RVMS--RSFAEPAKAEENFLILDQLKDANV 381 (1508)
Q Consensus 354 ~~Ls--~~fPDp~Ka~e~L~kFaklnD~Ri 381 (1508)
..+. .+-||.+++.=.+-.++..+||++
T Consensus 348 elv~e~vHT~dGS~vAm~li~~a~aKeRK~ 377 (652)
T KOG2050|consen 348 ELVPEMVHTRDGSRVAMKLIWHATAKERKL 377 (652)
T ss_pred HHHHHHhcCCchHHHHHHHHhhCCHHHHHH
Confidence 3333 344677776544445555667654
No 186
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=28.57 E-value=1.3e+02 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.1
Q ss_pred cCCeEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceee
Q 000441 1210 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1251 (1508)
Q Consensus 1210 vG~rikV~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1251 (1508)
+|++|+|..+ ...|.|.+.+.|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999994 44679999999876 778888888855544
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.71 E-value=2.6e+02 Score=39.15 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=92.2
Q ss_pred hcccCCCh-HHHHHHHHHHHHH---hcCCCC-chhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHH
Q 000441 99 GELLTDQL-DTRLKAVGLVGDL---FAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 173 (1508)
Q Consensus 99 ~EL~aed~-~~RllAT~lLG~M---fs~~gs-~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eI 173 (1508)
..|.+|.. -+|..-.+-|+.+ |+..++ ++.=.| .+-=.||++...|.++.+.+..+-.-=--+....=|
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLsh------LiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl 657 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSH------LITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL 657 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHH------HHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH
Confidence 34445543 6777666666665 444433 222222 223358999999999999987432211112223356
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHhhhhc-CCC-CCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000441 174 LTALCDRLLDFDENVRKQVVAVICDVACHA-LNS-IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 174 i~~L~~rL~D~DEkVR~aaVkaI~~la~~~-l~~-Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 241 (1508)
+..|..-|.|++|-|=..|..++..+.... +.. .=.++++.++--+.--+.=||+.++..++.+++..
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 799999999999999888887777666543 322 22367788888888888899999999988888864
No 188
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=27.68 E-value=1.8e+02 Score=31.13 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc-cccchHHHHHHHHHhhcc
Q 000441 433 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE-NEIIKEGILHVLAKAGGT 505 (1508)
Q Consensus 433 ks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~L~~lL~~~-n~~~~e~~LkaLa~~~k~ 505 (1508)
++.+..|.+++.. +|....-.|+.||..+.+.|...|..++ ++|++++... ++.+...+|..+..|+..
T Consensus 40 k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4445555555432 1112334567788888888877777653 6777777642 345777889999888866
Q ss_pred hh
Q 000441 506 IR 507 (1508)
Q Consensus 506 ~~ 507 (1508)
|+
T Consensus 116 f~ 117 (142)
T cd03569 116 FR 117 (142)
T ss_pred hC
Confidence 54
No 189
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=27.60 E-value=2.1e+02 Score=30.58 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCcCcccc------HHHHHHHHhh------ccccchHHHHHHHHHhhcchh
Q 000441 457 SCMDILGILARFSPLLLGGT------EEELVNLLKE------ENEIIKEGILHVLAKAGGTIR 507 (1508)
Q Consensus 457 ~a~eLL~~IS~~~P~lFk~~------v~~L~~lL~~------~n~~~~e~~LkaLa~~~k~~~ 507 (1508)
.|+.||..+.+.|-.-|..+ ..+|++++.. ..+.+...+|..+-.|+..|+
T Consensus 57 ~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 57 QALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34556666666665555544 3578887753 124577888999988886654
No 190
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=27.53 E-value=8.9e+02 Score=35.30 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChHHHHH
Q 000441 110 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 175 (1508)
Q Consensus 110 llAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~eIi~ 175 (1508)
.+.+.+|+.|-. ++ ...++.|..-|.++.+-+...-.++.-.|.+||...|+..+....++
T Consensus 963 ~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~e 1023 (2196)
T KOG0368|consen 963 KLVLALLDQLKP-PS----SKVSDEFRDILRKLTELNHTNTSEVALKARQILIQSPSYELRHNQIE 1023 (2196)
T ss_pred HHHHHHHHHhcC-CC----CCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhCcchhhhHHHHH
Confidence 344555555544 23 34456777777788887777777777777788887775444444443
No 191
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=27.46 E-value=1.3e+03 Score=31.81 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=79.8
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHhHhcCC---CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc---CCCCCHH
Q 000441 137 EFLKRLTDRIVAVRMSVLEHVKSCLLTDP---SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPVE 210 (1508)
Q Consensus 137 ~fL~R~~Dks~~VR~~wVe~~~~IL~~~p---~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~---l~~Vs~e 210 (1508)
.|...+.|+.-.=|.+.++....+|.+.. .-.....+.-++.-++.|+.-.|=..|...|..+|..- +......
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 67788889999999999999999998866 11223355678888999999999999888888888733 2333456
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000441 211 TVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 211 lL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
++-.|.+|+.|||..+|..+...+=.+.+
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 67788999999999999877766655544
No 192
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=27.37 E-value=3.9e+02 Score=34.63 Aligned_cols=115 Identities=20% Similarity=0.112 Sum_probs=65.4
Q ss_pred hCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCC
Q 000441 468 FSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 547 (1508)
Q Consensus 468 ~~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa~~~~~ 547 (1508)
....++..|.+-.|+-+-..| .+.|++++....+-|+-+.+ +.+.|.-|-..-.|.+ .+++++|+.+...+
T Consensus 159 ~~adLL~~hTEv~~~siLSgn----~~LLrvlS~Vye~~P~~i~P----hlP~l~~lL~q~~p~~-~~ll~~l~~LI~Qk 229 (851)
T KOG3723|consen 159 TKADLLADHTEVIVKSILSGN----TMLLRVLSAVYEKQPQPINP----HLPELLALLSQLEPEQ-YHLLRLLHVLIKQK 229 (851)
T ss_pred hhhhhccCchHHHHHHHhccc----hHHHHHHHHHHhcCCCccCc----ccHHHHHHhcCCCHHH-HHHHHHHHHHHHhc
Confidence 344566666666665554433 36788888777655544332 4455544444444544 57788887766655
Q ss_pred ccchHHHHHHHHHHhhhccCCCchHHHHHHHHHhhcccccccch
Q 000441 548 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRE 591 (1508)
Q Consensus 548 ~~~~~~~L~~~Lv~~L~~~s~l~t~LasL~~Ia~~aP~vfe~~~ 591 (1508)
....++..+-.|+-+|....+.-..++-|-.||.+.|.....+.
T Consensus 230 ~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~ 273 (851)
T KOG3723|consen 230 QLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFL 273 (851)
T ss_pred cHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHH
Confidence 55555555555665555444444455566666666665444433
No 193
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.01 E-value=2.2e+02 Score=31.24 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChh
Q 000441 146 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 225 (1508)
Q Consensus 146 s~~VR~~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~ 225 (1508)
.-..|++|+-.+..+.. ......+++.+...+.|.+.-||.++--++.+++... |..++..+.....+...-
T Consensus 119 ~~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~----~~~v~~~l~~~~~~~~~~ 190 (197)
T cd06561 119 EWVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD----PERVIAFLEKNGLSMPRL 190 (197)
T ss_pred HHHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHHhCChH
Confidence 34556667777665554 1234466777777777888888888888888777763 455555555554444444
Q ss_pred HHHHHH
Q 000441 226 VKRYTM 231 (1508)
Q Consensus 226 VR~eAm 231 (1508)
..++|+
T Consensus 191 t~r~a~ 196 (197)
T cd06561 191 TLRYAI 196 (197)
T ss_pred HHHHHc
Confidence 444443
No 194
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=1.3e+03 Score=28.72 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=106.6
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHHHHHhcCCC--CchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCC
Q 000441 92 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 169 (1508)
Q Consensus 92 sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~g--s~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~ 169 (1508)
+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=..|-++.|.+...-+... |.+.. +-
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~Y 284 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--EY 284 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--hh
Confidence 368999999999999999999999997654421 24778888899999999999999888876666543 33322 22
Q ss_pred hHHHH-----HHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCC---CHHHHHHHHHHhccCChh-HHHHHHHHHHHHHH
Q 000441 170 APQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVL-VKRYTMERLADIFR 239 (1508)
Q Consensus 170 ~~eIi-----~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~V---s~elL~~LaeR~RDKK~~-VR~eAm~~La~LY~ 239 (1508)
..+|+ +.|.+-|.|+--..=++.|.+|..++.+.+..+ ..-+|+-|..-++=+... +...|..+|-.|-.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 33444 467777888888888999999999998887654 445666666666655544 88888877766544
No 195
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.50 E-value=5.7e+02 Score=28.39 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHhHhc---CCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc
Q 000441 133 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 203 (1508)
Q Consensus 133 ~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~---~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~ 203 (1508)
.-|...|.-..+....||...++.+.-++.- ||. +.++.|.-..-|+++.||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888899999999999999988864 663 68899999999999999999988887765433
No 196
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=26.06 E-value=1.4e+02 Score=29.75 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHHHhccCChhHHHHHHHHHHHHHHHhh
Q 000441 186 ENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 242 (1508)
Q Consensus 186 EkVR~aaVkaI~~la~~~l~~Vs~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 242 (1508)
...|.++|-.+|.+....+-.||. ++|..|+....| ...||..+=++|+..++.+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 457899999999998888878876 678889999997 78999999999999999884
No 197
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=25.41 E-value=3.1e+02 Score=34.86 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=30.3
Q ss_pred cccCCeEEEecCCCCceEEEEEEeecCCC------CeeEEEcc
Q 000441 1208 DLIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYD 1244 (1508)
Q Consensus 1208 ~~vG~rikV~Wp~D~~~Y~G~V~~y~~~~------~~H~v~Yd 1244 (1508)
--||.+|.++|..|..||.++|....... ...-|.|.
T Consensus 54 ~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~ 96 (450)
T PLN00104 54 LEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYT 96 (450)
T ss_pred eccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEe
Confidence 34999999999999999999999988632 34667775
No 198
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.34 E-value=1.3e+03 Score=28.26 Aligned_cols=166 Identities=12% Similarity=0.192 Sum_probs=87.3
Q ss_pred HhhhcCCCCCCCCchhHHHHHHHHHhhC-chhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCC-CC------chhhh
Q 000441 59 VSSMSGDSRPGHSHIDYHEVIYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GS------ANNEQ 130 (1508)
Q Consensus 59 ~~vi~~d~~~~~~~~kaHeLI~eL~~~~-P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~-gs------~fa~~ 130 (1508)
..+|+|++.........+.|..|+|+.. -.+|...+|.|+. +.|..++..++-++... +. ++...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 4467776554444445788888888772 2234445566555 48999999999998753 22 23567
Q ss_pred c-HHHHHHHHhhhcCCChhHHHHHHHHhHH---------hHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhh
Q 000441 131 F-HSVFSEFLKRLTDRIVAVRMSVLEHVKS---------CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 200 (1508)
Q Consensus 131 y-~~~w~~fL~R~~Dks~~VR~~wVe~~~~---------IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la 200 (1508)
| |.+...++.=..+.+..+= |-.-... +++.++ .+.-+-+-..-+.=.|=..|...+.++-
T Consensus 122 ~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~ll 192 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALN--CGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELL 192 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHH
Confidence 7 8888877777765544332 2111111 222111 1111223344455555555555555543
Q ss_pred hhcCCCCCH-------HHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 000441 201 CHALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 240 (1508)
Q Consensus 201 ~~~l~~Vs~-------elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 240 (1508)
..+-..+.. .++...-..+.-.+.-.|+.++..||.|.-.
T Consensus 193 t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 193 TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 332222211 3334555666677778888888888887653
No 199
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=24.69 E-value=2.1e+03 Score=30.39 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred hhhcccCCChHHHHHHHHHHHHHh-cCCCCchhhhcH-HHHHHHHhhhcCC--------ChhHHHHHHHHhHHhHhcCCC
Q 000441 97 LTGELLTDQLDTRLKAVGLVGDLF-AVPGSANNEQFH-SVFSEFLKRLTDR--------IVAVRMSVLEHVKSCLLTDPS 166 (1508)
Q Consensus 97 Le~EL~aed~~~RllAT~lLG~Mf-s~~gs~fa~~y~-~~w~~fL~R~~Dk--------s~~VR~~wVe~~~~IL~~~p~ 166 (1508)
+++.-.-||.++=..|+=.+|.-+ ++.-.=-.+.|+ ++|.+||.-+--. -++||+.+.++-.+.+...
T Consensus 267 ~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~~l~~~~wD-- 344 (1697)
T KOG3687|consen 267 MEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKYELQVVAWD-- 344 (1697)
T ss_pred hhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHHHHHHHHHH--
Confidence 344455677777777777777544 332110112343 4788888544332 3566666555543222211
Q ss_pred CCChHHHHHHHHHhhcCCchH-HH---HHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCCh----------------hH
Q 000441 167 RADAPQILTALCDRLLDFDEN-VR---KQVVAVICDVACHALNSIPVETVKLVAERLRDKSV----------------LV 226 (1508)
Q Consensus 167 ~~~~~eIi~~L~~rL~D~DEk-VR---~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~----------------~V 226 (1508)
..-+|+..+..-+.=.|+- .| ..-...|..++..+--+-+.+.+-.|.|||.|+++ .+
T Consensus 345 --~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~~~V~A~ 422 (1697)
T KOG3687|consen 345 --ILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRAQSVHAA 422 (1697)
T ss_pred --HHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhhhccCcC
Confidence 0111222221111111111 11 11123344444444223356667788899999987 46
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCc---chhhcccchHHHhhhhccCCCCcchHHHHhhccCc--CCCCCHHHHH---HHH
Q 000441 227 KRYTMERLADIFRGCCLRNFNGSI---NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRV---RHW 298 (1508)
Q Consensus 227 R~eAm~~La~LY~~~~~~~~~~~~---~~~~~~wIPskIL~~~Y~nD~e~~lVE~vL~e~Ll--P~~~~~~~R~---~rl 298 (1508)
|--++..|+.+-..++.....+.. +...|..||..- +.+|.. ..+-+|..-.|- |++.+.+-|. ++|
T Consensus 423 R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~n-r~~yee----EIL~~VvL~~lshi~L~~~~qvr~l~~~~l 497 (1697)
T KOG3687|consen 423 RDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLIN-RQFYEE----EILNSVVLSQLSHIPLDKDHQVRKLATQLL 497 (1697)
T ss_pred CchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhh-hhhhHH----HhhhheeeEeeccccccchhHHHHHHHHHH
Confidence 777788888887777754444432 234455555432 333321 123333322333 4444444453 444
Q ss_pred HHHHhcCCHH
Q 000441 299 VRIFSGFDRI 308 (1508)
Q Consensus 299 l~l~~~LD~~ 308 (1508)
+.+..+-|.+
T Consensus 498 ~N~a~~C~t~ 507 (1697)
T KOG3687|consen 498 VNLAEGCHTH 507 (1697)
T ss_pred HHHHhhcchh
Confidence 4555554543
No 200
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.32 E-value=1.7e+02 Score=30.90 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=59.4
Q ss_pred HhHhcCCCCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhc---CC--CCCHHHHHHHHHHhccCChh----HHHH
Q 000441 159 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LN--SIPVETVKLVAERLRDKSVL----VKRY 229 (1508)
Q Consensus 159 ~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~---l~--~Vs~elL~~LaeR~RDKK~~----VR~e 229 (1508)
..+...+ ..+.+.+.+|.+||...+.+|-+-|+..+..+.... |+ ..+.+++..|...+.++... ||+.
T Consensus 31 D~i~~~~--~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k 108 (140)
T PF00790_consen 31 DLINSSP--DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEK 108 (140)
T ss_dssp HHHHTST--THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHH
T ss_pred HHHHcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHH
Confidence 3344443 346799999999999999999999999988877643 32 34778888888888887764 7777
Q ss_pred HHHHHHHHHHHhh
Q 000441 230 TMERLADIFRGCC 242 (1508)
Q Consensus 230 Am~~La~LY~~~~ 242 (1508)
++..|. -|..++
T Consensus 109 ~l~ll~-~W~~~f 120 (140)
T PF00790_consen 109 ILELLQ-EWAEAF 120 (140)
T ss_dssp HHHHHH-HHHHHT
T ss_pred HHHHHH-HHHHHH
Confidence 776654 455554
No 201
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.92 E-value=4.4e+02 Score=31.93 Aligned_cols=119 Identities=11% Similarity=0.186 Sum_probs=80.4
Q ss_pred HHHHHhhccc-------CccHHHHHHHHHHhc---C-CCChHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc-------CC
Q 000441 4 IMIVLLEESE-------DIQEDLLVILLSALG---R-NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMS-------GD 65 (1508)
Q Consensus 4 IL~~lIeEs~-------~Vp~~vLDvIL~qf~---~-~ks~~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~-------~d 65 (1508)
++.+.|+-++ .+=+++++.+|.-.. + .+-+..-.+...||++-.+.+.+.|.+.|..++. ++
T Consensus 50 Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d 129 (319)
T PF08767_consen 50 LIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKD 129 (319)
T ss_dssp HHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4455555444 344556666664332 2 2345788999999999999888888888876542 22
Q ss_pred CCCCCCc-hhHHHHHHHHHhhCchhhhh--------hhhhhhhcccCCChHHHHHHHHHHHHHhcC
Q 000441 66 SRPGHSH-IDYHEVIYDVYRCSPQILSG--------VVPYLTGELLTDQLDTRLKAVGLVGDLFAV 122 (1508)
Q Consensus 66 ~~~~~~~-~kaHeLI~eL~~~~P~lL~s--------VIPqLe~EL~aed~~~RllAT~lLG~Mfs~ 122 (1508)
-....+. ...+.||..+.+.||..|.+ |+-.+..-+++.+.++-..+.+++..|+..
T Consensus 130 ~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 130 FEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 2222233 35789999999998887754 455666677788888888999999888853
No 202
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=23.81 E-value=5.3e+02 Score=28.05 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=74.7
Q ss_pred HHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHh
Q 000441 81 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 160 (1508)
Q Consensus 81 eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~I 160 (1508)
+-|.-.|+||.-++..|-.| .+..+|..|.++|| ++|+-+ |-.++..-+...+... .. .-.......
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lG-ilGALD-------P~~~k~~~~~~~~~~~-~~-~~~~~~~~~ 69 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTE---QSQSIRREALRVLG-ILGALD-------PYKHKSIQKSLDSKSS-EN-SNDESTDIS 69 (160)
T ss_pred chHHHhHHHHHHHHHHHHhC---CCHHHHHHHHHHhh-hccccC-------cHHHhcccccCCcccc-cc-ccccchhhH
Confidence 45777899999988888887 34999999999999 555543 1222222221111110 00 000000011
Q ss_pred Hh---cCCCCCC--hHHHHHHHHHhhcCCchHHHH-HHHHHHHHhhh-hcCCCCCH--HHHHHHHHHhccCChhHHHHHH
Q 000441 161 LL---TDPSRAD--APQILTALCDRLLDFDENVRK-QVVAVICDVAC-HALNSIPV--ETVKLVAERLRDKSVLVKRYTM 231 (1508)
Q Consensus 161 L~---~~p~~~~--~~eIi~~L~~rL~D~DEkVR~-aaVkaI~~la~-~~l~~Vs~--elL~~LaeR~RDKK~~VR~eAm 231 (1508)
+. ..|+.++ ..-++.+|..-|.|+--.--. ++|.+|-.+-. ..+..+|. .++-.+..-+|.-....|..-.
T Consensus 70 l~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 70 LPMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred HhhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHH
Confidence 11 1121111 112345666666665443322 45555544332 22233333 3344555555555558888888
Q ss_pred HHHHHHHH
Q 000441 232 ERLADIFR 239 (1508)
Q Consensus 232 ~~La~LY~ 239 (1508)
..|+.|..
T Consensus 150 ~qL~~lv~ 157 (160)
T PF11865_consen 150 QQLADLVS 157 (160)
T ss_pred HHHHHHHH
Confidence 88888765
No 203
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=23.60 E-value=28 Score=40.28 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=10.8
Q ss_pred cccccccCCCCCCccccc
Q 000441 1440 SREEANEDGKSDSEGNEE 1457 (1508)
Q Consensus 1440 ~~~~~~~~~~~d~~~~~~ 1457 (1508)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555556666666665543
No 204
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=23.32 E-value=2e+03 Score=29.54 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh-ccccchHHHHHHHHHhh
Q 000441 453 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAKAG 503 (1508)
Q Consensus 453 ~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~-~n~~~~e~~LkaLa~~~ 503 (1508)
.....+++||..++..+|.++... ++.+|.. .++.-...+++.++...
T Consensus 196 ~r~~w~~rLL~lL~~~~Psi~~~~---~~~lL~~A~~~~~l~lli~L~~~~~ 244 (696)
T PF14838_consen 196 KRQQWAHRLLCLLSSQHPSIAIEA---ISYLLTKAQNPEHLALLIRLYAGLS 244 (696)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHHhcCCHHHHHHHHHHHhccc
Confidence 446789999999999999998744 4444554 44444455666666443
No 205
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.29 E-value=9.6e+02 Score=28.29 Aligned_cols=169 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCh---HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCCCCC-----------------CchhHHHHH
Q 000441 20 LVILLSALGRNKND---TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGH-----------------SHIDYHEVI 79 (1508)
Q Consensus 20 LDvIL~qf~~~ks~---~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~-----------------~~~kaHeLI 79 (1508)
++.||++|...... .|-+.|.. +-+.|-|.+-..+.+.+.....-.+ ...++|.+|
T Consensus 3 ~~~il~~l~~~~~~~P~~al~~A~~----~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~~l 78 (249)
T PF06685_consen 3 IEEILEQLSYNDGEFPREALEAAIE----QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREERALPPL 78 (249)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHH----CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHhhCchhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000441 80 YDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 159 (1508)
Q Consensus 80 ~eL~~~~P~lL~sVIPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~ 159 (1508)
.+|.+..++.+..+++=. +|+.++++|+. +..--.+....++ --.+...-||++++++...
T Consensus 79 i~l~~~~~~~~~~l~GD~--------------~tE~l~~ilas----v~~G~~~~L~~li-~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 79 IRLFSQDDDFLEDLFGDF--------------ITEDLPRILAS----VGDGDIEPLKELI-EDPDADEYVRMAAISALAF 139 (249)
T ss_pred HHHHcCCcchHHHHHcch--------------hHhHHHHHHHH----HhCCCHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Q ss_pred hHhcCC-CCCChHHHHHHHHHhhcCCchHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhccCChhHHH
Q 000441 160 CLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKR 228 (1508)
Q Consensus 160 IL~~~p-~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~ 228 (1508)
+...+| +|+...+....|-......++.. +.+.+....+..-|.+++ +.||+
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~------~~~~Lv~~~~dL~~~EL~-----------~~I~~ 192 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSF------LWGSLVADICDLYPEELL-----------PEIRK 192 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchH------HHHHHHHHHHhcCHHHhH-----------HHHHH
No 206
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.82 E-value=2.6e+02 Score=29.91 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCCcCcccc------HHH-HHHHHhhc-c--ccchHHHHHHHHHhhcchh
Q 000441 456 QSCMDILGILARFSPLLLGGT------EEE-LVNLLKEE-N--EIIKEGILHVLAKAGGTIR 507 (1508)
Q Consensus 456 ~~a~eLL~~IS~~~P~lFk~~------v~~-L~~lL~~~-n--~~~~e~~LkaLa~~~k~~~ 507 (1508)
-.|+.||..+.+.|...|..+ .++ |++++... + ..+...+|..+..|+..|+
T Consensus 57 l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 57 MLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 346677777777777777654 356 77777642 2 2466778888888876554
No 207
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.52 E-value=5.7e+02 Score=33.28 Aligned_cols=99 Identities=15% Similarity=0.049 Sum_probs=63.6
Q ss_pred HHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccc-cchHHHHHHHHH
Q 000441 423 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENE-IIKEGILHVLAK 501 (1508)
Q Consensus 423 l~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~~lL~~~n~-~~~e~~LkaLa~ 501 (1508)
+|--.|-.++. |+|.|+-++.++.-.. ...-..+...|++..|+++..++..|+-.|.+.+. ...-.+|+.+|.
T Consensus 189 Vye~~P~~i~P-hlP~l~~lL~q~~p~~----~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~ 263 (851)
T KOG3723|consen 189 VYEKQPQPINP-HLPELLALLSQLEPEQ----YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAV 263 (851)
T ss_pred HHhcCCCccCc-ccHHHHHHhcCCCHHH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Confidence 45555666665 8899998886543111 11123445689999999999999999998888543 344567777777
Q ss_pred hhcchhhhhhcccchHHHHHHHHhhc--C-CHHHH
Q 000441 502 AGGTIREQLAATSSSVDLLLERLCLE--G-SRRQA 533 (1508)
Q Consensus 502 ~~k~~~e~~~~~~s~l~~~L~~lal~--G-tP~qA 533 (1508)
++.. ....+.+.|..+++. | +|.+|
T Consensus 264 ~~pv-------~l~~~~E~l~e~~~~~p~~~~~~a 291 (851)
T KOG3723|consen 264 YEPV-------ALNSFLEMLKEIGERFPYLTGQMA 291 (851)
T ss_pred cCcc-------chhhHHHHHHHHHHhCCCccHHHH
Confidence 7643 223466667666654 2 25554
No 208
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=22.08 E-value=1.5e+02 Score=30.03 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHhhhcC--CCCCCCCchhHHHHHHHHHhhCchhhhhhhhhhhhcccC--CChHHHHHHHHH
Q 000441 55 KQFLVSSMSG--DSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--DQLDTRLKAVGL 115 (1508)
Q Consensus 55 ~qyF~~vi~~--d~~~~~~~~kaHeLI~eL~~~~P~lL~sVIPqLe~EL~a--ed~~~RllAT~l 115 (1508)
-++|+++|.+ +..+..+..++-.-|.+|-+.+..-+..+.||+..=|++ +..++|..|.+.
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~ 77 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSC 77 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 4788888876 344545566677777777789999999999998887774 344566665543
No 209
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.55 E-value=1.2e+02 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHhHHhHhcCCCCCChHHHHHHHHHhhcCCchHHHHH
Q 000441 152 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQ 191 (1508)
Q Consensus 152 ~wVe~~~~IL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~a 191 (1508)
.+|+.++.|...|+ ..+|...|.+|-+||||.|-.-
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qrL 42 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQRL 42 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 57899999888765 3489999999999999976443
No 210
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.30 E-value=1.1e+02 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.8
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHHHHHh
Q 000441 91 SGVVPYLTGELLTDQLDTRLKAVGLVGDLF 120 (1508)
Q Consensus 91 ~sVIPqLe~EL~aed~~~RllAT~lLG~Mf 120 (1508)
.++||.|-.-|.+.+..+|..|+-+|+.|-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999874
No 211
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=21.09 E-value=1.7e+03 Score=31.79 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCC
Q 000441 462 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 529 (1508)
Q Consensus 462 L~~IS~~~P~lFk~~v~~L~~lL~~~n~~~~e~~LkaLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gt 529 (1508)
|.-+|+++..-+..++..+..++=..=-.+...+.++++...+.+|..+.. ..|++||.-+.
T Consensus 583 l~sVS~yYS~eLv~~vR~VLqiIP~smF~il~~ii~l~t~~~ke~P~rl~K------~~lk~~Aql~~ 644 (1081)
T PF10266_consen 583 LSSVSQYYSSELVKYVRKVLQIIPESMFEILAQIIDLQTNVLKELPTRLEK------DELKDYAQLDE 644 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccccCCCccCH------HHHHHHHhhHH
Confidence 555777766655555555554433211112233333333333444433322 33666666554
No 212
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=21.05 E-value=5.3e+02 Score=28.55 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHH----hhCchhhhhh-----
Q 000441 23 LLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVY----RCSPQILSGV----- 93 (1508)
Q Consensus 23 IL~qf~~~ks~~Ay~LA~~Ic~~~~dkLq~~I~qyF~~vi~~d~~~~~~~~kaHeLI~eL~----~~~P~lL~sV----- 93 (1508)
++..+.....-.+..+|..|+..+...++..+-.++...+..-+. | .+|+.++..+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~---------------W~~~D~~~~~~~~~~~~~~~ 119 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEEDLELLEKWLPDIDN---------------WATCDSLCSKLLGPLLKKHP 119 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCC---------------HHHHHHHTHHHHHHHHHHHG
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCc---------------chhhhHHHHHHHHHHHHhhH
Q ss_pred --hhhhhhcccCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHhHhcCCCCCChH
Q 000441 94 --VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 171 (1508)
Q Consensus 94 --IPqLe~EL~aed~~~RllAT~lLG~Mfs~~gs~fa~~y~~~w~~fL~R~~Dks~~VR~~wVe~~~~IL~~~p~~~~~~ 171 (1508)
.|.++..+.++++-+|..|..++-..+.. .....++..--....|...-||.++-=+...+...+|+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~----- 188 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD----- 188 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH-----
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH-----
Q ss_pred HHHHHHHHhhcCCchHHHHHHHH
Q 000441 172 QILTALCDRLLDFDENVRKQVVA 194 (1508)
Q Consensus 172 eIi~~L~~rL~D~DEkVR~aaVk 194 (1508)
.+...|.....-...-++..|++
T Consensus 189 ~v~~~l~~~~~~~~~~~~r~Ai~ 211 (213)
T PF08713_consen 189 EVLEFLQKNSDRLSRWTLRYAIE 211 (213)
T ss_dssp HHHHHHHHS-----HHHHHHHCT
T ss_pred HHHHHHHHCcccCchhHHHHHHH
No 213
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=21.05 E-value=2.7e+02 Score=37.06 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=67.1
Q ss_pred HHHhhhccccChHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH-HHHhhccccchHHHHHHHH
Q 000441 422 LSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV-NLLKEENEIIKEGILHVLA 500 (1508)
Q Consensus 422 Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~L~-~lL~~~n~~~~e~~LkaLa 500 (1508)
+-.-++...|....+++|....+........-..-.=+++ .+.+..|+-|+.++-.|+ ..+++.+..+-+.+|+++.
T Consensus 337 i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdl--L~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lp 414 (700)
T KOG2137|consen 337 IAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDL--LKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILP 414 (700)
T ss_pred hhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHH--HHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhh
Confidence 3334455566666666666655431111100000000122 356778888888875554 4455555567888999999
Q ss_pred HhhcchhhhhhcccchHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 000441 501 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 542 (1508)
Q Consensus 501 ~~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVriLaa 542 (1508)
.++..+. ++.....+.++|.++|..-+..- -++.||.+
T Consensus 415 tv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~--vkvn~L~c 452 (700)
T KOG2137|consen 415 TVAESID--VPFVKQAILPRLKNLAFKTTNLY--VKVNVLPC 452 (700)
T ss_pred HHHHhcc--HHHHHHHHHHHhhcchhcccchH--HHHHHHHH
Confidence 8887666 34446788999999988766433 23455553
Done!