Query 000441
Match_columns 1508
No_of_seqs 273 out of 416
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:32:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000441.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_220-224//hhsearch_pdb/000441hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 94.2 43.3 160 79-241 76-246 (852)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 88.2 55.1 133 455-587 376-518 (852)
3 1b3u_A Protein (protein phosph 1.0 1 1 85.1 32.7 146 90-239 85-232 (588)
4 1b3u_A Protein (protein phosph 1.0 1 1 84.3 26.0 143 94-239 12-155 (588)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 83.1 48.0 149 90-239 131-284 (1230)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 80.4 56.5 606 81-804 82-735 (861)
7 2vgl_B AP-2 complex subunit be 1.0 1 1 80.3 34.9 487 94-721 15-522 (591)
8 1qgr_A Protein (importin beta 1.0 1 1 80.3 52.1 152 86-241 84-248 (876)
9 2vgl_B AP-2 complex subunit be 1.0 1 1 73.7 34.4 124 75-204 69-192 (591)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 69.7 42.0 167 75-241 68-245 (1230)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=94.22 Aligned_cols=160 Identities=6% Similarity=-0.013 Sum_probs=95.8
Q ss_pred HHHHHHH-CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999940-741455335423010038896899999999999835999962422399999998310599923999999995
Q 000441 79 IYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 157 (1508)
Q Consensus 79 I~eL~~~-~P~lL~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~~Dks~~VR~~~V~~~ 157 (1508)
|..-|.. .|+....+-+.|-.-|..++..+|..+...++.++... +....|.+....+....+.++.+|...+.++
T Consensus 76 i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L 152 (852)
T 4fdd_A 76 VKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGAL 152 (852)
T ss_dssp TTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9874477999999999999999874998999999999999999864---8135689999999987099989999999999
Q ss_pred HHHHHCCCCC-------CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 8857129999-------97678999998761698367999999999984210178---7798889999977136893699
Q 000441 158 KSCLLTDPSR-------ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVK 227 (1508)
Q Consensus 158 ~~iL~~~p~~-------~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~---~Vs~elL~~LaeR~RDKK~~VR 227 (1508)
..+....+.. .....++..|...+.|++..||.+|+.+++.+...... ..-.+++..+...+.|....||
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr 232 (852)
T 4fdd_A 153 QKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVR 232 (852)
T ss_dssp HHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999857875634313329999999999856797899999999999998646387998899999999987179977899
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999986
Q 000441 228 RYTMERLADIFRGC 241 (1508)
Q Consensus 228 ~eAm~~La~LY~~~ 241 (1508)
+.|+..|+.+...+
T Consensus 233 ~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 233 KNVCRALVMLLEVR 246 (852)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999857
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=88.19 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHH-HCCCCHHHHHHHHHHHCCC
Q ss_conf 89999999999962996822229----999999741141006999999998301036642-0055129999998951499
Q 000441 455 MQSCMDILGILARFSPLLLGGTE----EELVNLLKEENEIIKEGILHVLAKAGGTIREQL-AATSSSVDLLLERLCLEGS 529 (1508)
Q Consensus 455 ~~~a~eLL~~IS~~~P~lFk~~v----~eL~~lL~~~~~~~~e~~LkaLak~~k~~~e~~-~~~~s~l~~~L~~lal~Gt 529 (1508)
...|...|..|+..++..+..+. ..|+..+.+.++.+...++.++..++..++... ......+.+.|.+......
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999863568899879999999998717998899999999999999886110478999999999999985898
Q ss_pred HHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCC
Q ss_conf 7989999999996217874---1139999999998300069--98247899999994313332
Q 000441 530 RRQAKYAVHALAAITKDDG---LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVF 587 (1508)
Q Consensus 530 P~qAK~AVr~Laa~~~~~~---~~~~~~L~~~Lv~~L~~~~--~l~t~LasLs~Ia~~aP~vf 587 (1508)
|.....|+.+|..+....+ ..++..++..++..+.... +....+.+++.|+......+
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999973676676799999999999988374799999999999999742431
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=85.11 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 55335423010038896899999999999835999962422399999998310-59992399999999588571299999
Q 000441 90 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRA 168 (1508)
Q Consensus 90 L~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~-~Dks~~VR~~~V~~~~~iL~~~p~~~ 168 (1508)
...++|.|..-+..++..+|..|...++.+....+.. .....+..++.+. .+..+.+|...+..++.+...-+. .
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~ 160 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-A 160 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-H
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH-H
T ss_conf 9998999999874760799999999999999979999---99999999999985077717999999999999985699-9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7678999998761698367999999999984210178-7798889999977136893699999999999999
Q 000441 169 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 169 ~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~-~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
...+++..|...+.|++..||.+|+.+++.++..... .....++..+...+.|....||..|+..|+.+..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998489978899999998999999816776799999999988249928899989999999998
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=84.29 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=60.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 54230100388968999999999998359999624223999999983105999239999999958857129999976789
Q 000441 94 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 173 (1508)
Q Consensus 94 iPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~~Dks~~VR~~~V~~~~~iL~~~p~~~~~~eI 173 (1508)
|..|-..|.+++..+|..|++.++.+....|.. ... ...-.+|....|.+..||...++..+.+...-........+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~--~~~-~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~l 88 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTR-SELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH--HHH-HTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHH--HHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999850621999999997199999986979--899-98998898755785899999999997787605859899998
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999876169836799999999998421017-87798889999977136893699999999999999
Q 000441 174 LTALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 174 i~~L~~rL~D~DEkVR~aaVkaI~~la~~~l-~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
+..|...+.|.+..||.+|+.+++.++.... ..+...++..+.....+..+.+|..|+..|+.+|.
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999998747607999999999999999799999999999999998507771799999999999998
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=83.10 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5533542301003-889689999999999983599996242239999999831059992399999999588571299999
Q 000441 90 LSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 168 (1508)
Q Consensus 90 L~sViPqLe~EL~-add~~vRllAT~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~~Dks~~VR~~~V~~~~~iL~~~p~~~ 168 (1508)
...++|.|..-|. +++..+|..|...++++...-+..+...++.+...++.-+.|..+.||...+.+++.+....+..
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~- 209 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI- 209 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH-
T ss_conf 9999999999875788467999999999999998276778879999999999875996899999999999999856899-
Q ss_pred CHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 76789999987616983-6799999999998421017877---98889999977136893699999999999999
Q 000441 169 DAPQILTALCDRLLDFD-ENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFR 239 (1508)
Q Consensus 169 ~~~eIi~~L~~rL~D~D-EkVR~aaVkaI~~la~~~l~~V---s~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 239 (1508)
....++..|...|.+.+ ..+|..++.++..++......+ -.+++..+..-+.|....||..|+..|+.+-.
T Consensus 210 ~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp -CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998616775568999999999999986898998899999999998668977899999999999999
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=80.44 Aligned_cols=606 Identities=12% Similarity=0.088 Sum_probs=275.6
Q ss_pred HHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH-HHCHHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 9994--07414553354230100388968999999999998359999624-22399999998310599-92399999999
Q 000441 81 DVYR--CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDR-IVAVRMSVLEH 156 (1508)
Q Consensus 81 eL~~--~~P~lL~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a-~~y~~lw~~fL~R~~Dk-s~~VR~~~V~~ 156 (1508)
..|. +.++....+-..|-.-|..++..+|..+.+.|+.++.. .+. ...|.+...++....+. ++.+|...+..
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~---~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~ 158 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI---ELPHGAWPELMKIMVDNTGAEQPENVKRASLLA 158 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---HGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 76766299999999999999987799637999999999999984---676455499999999987268978999999999
Q ss_pred HHHHHHCCC-C----CCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHCCCCH
Q ss_conf 588571299-9----997678999998761698--367999999999984210---1787--798889999977136893
Q 000441 157 VKSCLLTDP-S----RADAPQILTALCDRLLDF--DENVRKQVVAVICDVACH---ALNS--IPVETVKLVAERLRDKSV 224 (1508)
Q Consensus 157 ~~~iL~~~p-~----~~~~~eIi~~L~~rL~D~--DEkVR~aaVkaI~~la~~---~l~~--Vs~elL~~LaeR~RDKK~ 224 (1508)
+..|...-. . ......|+..|...+.|+ +..||.+|+++++.+... .+.. .-..++..+.+.+.|..+
T Consensus 159 l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 159 LGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999727843567898899999999984157999878999999999999999998706766899999999998659988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999999999986210259984011016634888622113788850489985205869999979999999999921
Q 000441 225 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSG 304 (1508)
Q Consensus 225 ~VR~eAm~~La~LY~~~~~~~~~g~~~~~~l~wIPskIL~~~Y~nD~e~~lVE~vL~e~LlP~~~~~~~R~~rLl~l~~~ 304 (1508)
.||..|+..|+.+...+.... .. .++..|+.. + ...+- ..+...|...+-
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~------~~---~l~~~l~~~-------------~-~~~~~--~~~~~vr~~a~~----- 288 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFM------KP---YMEQALYAL-------------T-IATMK--SPNDKVASMTVE----- 288 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGC------HH---HHHHTHHHH-------------H-HHHTT--CSSHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HH---HHHHHHHHH-------------H-HHHHC--CCCHHHHHHHHH-----
T ss_conf 999999999999999988999------99---889999999-------------9-99873--772789999999-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf 999999999999999999999999999998651399937-----999999999999764139934588999999951018
Q 000441 305 FDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAP-----EIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDA 379 (1508)
Q Consensus 305 LD~~a~kal~~il~~q~~l~~~l~~yL~l~e~~~~gd~~-----ei~kkL~~~I~~Ls~~fPDp~Ka~e~L~kf~klnD~ 379 (1508)
.+..+....... .. +..+ .+..+ .....+..++..+...+.++. .|.
T Consensus 289 -------~l~~l~~~~~~~----~~--~~~~---~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~------------~d~ 340 (861)
T 2bpt_A 289 -------FWSTICEEEIDI----AY--ELAQ---FPQSPLQSYNFALSSIKDVVPNLLNLLTRQN------------EDP 340 (861)
T ss_dssp -------HHHHHHHHHHHH----HH--HHHH---CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC------------CC-
T ss_pred -------HHHHHHHHHHHH----HH--HHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_conf -------999999878864----33--3210---3577325699999999889999999987066------------530
Q ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8999999974679999-989999999999956897569999999986210255767899999999961043024548999
Q 000441 380 NVWKILMNLLDSNTSF-DQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSC 458 (1508)
Q Consensus 380 Ri~klLk~~idp~td~-ktv~ka~kELlkrL~~~~~~~e~l~~Ll~RsS~lifNks~V~~LL~~~~~~~~~~~~~~~~~a 458 (1508)
-+.+.+. ..+..+...+...+++ ..++.++..+.....+.+-.....|
T Consensus 341 ---------~d~~~~~r~~a~~~L~~l~~~~~~----------------------~~~~~l~~~l~~~l~~~~~~~r~~a 389 (861)
T 2bpt_A 341 ---------EDDDWNVSMSAGACLQLFAQNCGN----------------------HILEPVLEFVEQNITADNWRNREAA 389 (861)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHHHHHGG----------------------GGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHCCH----------------------HHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf ---------124686899999999999987408----------------------6899999999987579972699999
Q ss_pred HHHHHHHHHHCC-CCCCCCHH----HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHH--HCCCCHHHHHHHHHHHCCCHH
Q ss_conf 999999996299-68222299----99999741141006999999998301036642--005512999999895149979
Q 000441 459 MDILGILARFSP-LLLGGTEE----ELVNLLKEENEIIKEGILHVLAKAGGTIREQL--AATSSSVDLLLERLCLEGSRR 531 (1508)
Q Consensus 459 ~eLL~~IS~~~P-~lFk~~v~----eL~~lL~~~~~~~~e~~LkaLak~~k~~~e~~--~~~~s~l~~~L~~lal~GtP~ 531 (1508)
...|..|+..+. ..+..+.. .|+..+.+.++.+...++.++..++..+...+ ...-..+.+.|...... .|+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~ 468 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPK 468 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CHH
T ss_conf 9999999859987888998999999999882899599999999999999987354048788899999999997644-728
Q ss_pred HHHHHHHHHHHHCCC------CC-CCHHHHHHHHHHHHHHCCC---C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999962178------74-1139999999998300069---9-82478999999943133324505789999998
Q 000441 532 QAKYAVHALAAITKD------DG-LKSLSVLYKRLVDMLEEKT---H-LPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 600 (1508)
Q Consensus 532 qAK~AVr~Laa~~~~------~~-~~~~~~L~~~Lv~~L~~~~---~-l~t~LasLs~Ia~~aP~vfe~~~~~I~~fiik 600 (1508)
....|..+|..+... .. ..++..++..+...+...+ + -.+.+.+|+.|+...+..+......+...++.
T Consensus 469 v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999998623135424689999999999999857586158999999999999997626569999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 36215776678888878886146788999999999852487756644206889999999640287766777984555443
Q 000441 601 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHL 680 (1508)
Q Consensus 601 ~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~i~~~GEl~~~~~tp~~~ksrL 680 (1508)
.+...-. .. .....-.+.+.....+..++.+|.+-+..... ...+.+..++..+..++.... + + .+
T Consensus 549 ~l~~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~-------~--~--~v 614 (861)
T 2bpt_A 549 KLGQTMS-VD-ENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKD-------S--A--FI 614 (861)
T ss_dssp HHHHHTT-SC-GGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTT-------G--G--GT
T ss_pred HHHHHHH-HH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCC-------C--C--CH
T ss_conf 9998875-32-01388556777999999999999999998556-347899999999999974678-------8--7--57
Q ss_pred HHHHHHHHHHHHHCCCCCCC---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHH----HHHHHCCCCC
Q ss_conf 69999999984201478889---999999821146883569999999989857319996-457887----8632037899
Q 000441 681 RLASAKAVLRLSRQWDHKIP---VDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLD-AKYACA----FLFGITESKS 752 (1508)
Q Consensus 681 RL~Aa~~lLKLa~~~d~~i~---~~~f~ll~l~~qD~~~~VR~~Fl~KL~k~L~~~~L~-~ry~~l----lfl~a~a~ep 752 (1508)
|-.+..++-.++......+. +.++-.+.....++.+.||...+.-+......-.-. ..|+.- ++-.......
T Consensus 615 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 694 (861)
T 2bpt_A 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA 694 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999766099999999999998865566789999999999999874540311199999999997278655
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7108989999999999999999643200145655676136889999881279
Q 000441 753 PEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHH 804 (1508)
Q Consensus 753 ~~~~e~K~~l~~~i~~~~~~~~r~~s~~s~~~~~~~~pEy~LprLIhLLAHH 804 (1508)
..+.+......+...... . ......+.+.++|.|+..+.+.
T Consensus 695 --~~~vr~~~~~~l~~l~~~----~-----~~~~~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 695 --RRELKPAVLSVFGDIASN----I-----GADFIPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp --CTTHHHHHHHHHHHHHHH----H-----GGGGHHHHHHHHHHHHHHHTCC
T ss_pred --CHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf --676659999999999998----4-----0508999999999999997367
No 7
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=80.35 Aligned_cols=487 Identities=11% Similarity=0.095 Sum_probs=220.1
Q ss_pred HHHHHHCCCCCCHHHHHHHH-HHHHHHHCCCCCCHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 54230100388968999999-99999835999962422399999998310599923999999995885712999997678
Q 000441 94 VPYLTGELLTDQLDTRLKAV-GLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 172 (1508)
Q Consensus 94 iPqLe~EL~add~~vRllAT-~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~~Dks~~VR~~~V~~~~~iL~~~p~~~~~~e 172 (1508)
+..|-.+|.+.+...|..|. +++.-|.-+ -++..-++.+- +=+.+.+..+|...--++..+...+|+ ...-
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G--~d~~~~~~~vi----~l~~s~~~~~Krl~yl~l~~~~~~~~e--~~~l 86 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVG--KDVSSLFPDVV----NCMQTDNLELKKLVYLYLMNYAKSQPD--MAIM 86 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTT--CCCGGGHHHHH----HTTSSSCHHHHHHHHHHHHHHHHHSHH--HHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CCHHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHCCCCCH--HHHH
T ss_conf 999999873998799999999999999879--98688999999----881799899999999999998665806--8999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999876169836799999999998421017877988899999771368936999999999999998621025998401
Q 000441 173 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQ 252 (1508)
Q Consensus 173 Ii~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~ 252 (1508)
++..|..-|.|+++-||..|+.+++.+... .+...++..+...+.|.++.||+.|..+|+++|..+- ...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~---~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-------~~~ 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVD---KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-------QMV 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSG---GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-------CCH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-------HHC
T ss_conf 999999776999999999999998758907---7899999999998179985899999999999985192-------414
Q ss_pred HHCCCCHHHHHHHHCCCCCCCC-HHHHHHHCCCCCCC-----CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1016634888622113788850-48998520586999-----997-9999999999921999999999999999999999
Q 000441 253 NEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTG-----FSV-KDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQ 325 (1508)
Q Consensus 253 ~~l~wIPskIL~~~Y~nD~e~~-lVE~vL~e~LlP~~-----~~~-~~R~~rLl~l~~~LD~~a~kal~~il~~q~~l~~ 325 (1508)
..-+|+| .+..++.+.|.... ..=..|.+ +.+.. ++. .....+++..+...+
T Consensus 157 ~~~~~~~-~l~~lL~d~d~~V~~~A~~aL~~-i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~------------------- 215 (591)
T 2vgl_B 157 EDQGFLD-SLRDLIADSNPMVVANAVAALSE-ISESHPNSNLLDLNPQNINKLLTALNECT------------------- 215 (591)
T ss_dssp HHHHHHH-HHHHTTSCSCHHHHHHHHHHHHH-HTTSCCSCCSCCCHHHHHHHHHHHHHHCC-------------------
T ss_pred CCCCHHH-HHHHHHCCCCHHHHHHHHHHHHH-HHHHCCCCCCHHCCHHHHHHHHHCCCCCC-------------------
T ss_conf 4635899-99999679984399999999999-97637875404426999999987488788-------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999865139993799999999999976413993458899999995101889999999746799999899999999
Q 000441 326 EMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDL 405 (1508)
Q Consensus 326 ~l~~yL~l~e~~~~gd~~ei~kkL~~~I~~Ls~~fPDp~Ka~e~L~kf~klnD~Ri~klLk~~idp~td~ktv~ka~kEL 405 (1508)
+-.+.+ ++++++...|...... ..+. ..+
T Consensus 216 -----------------~~~q~~---il~~l~~l~~~~~~~~-----------~~~l--------------------~~l 244 (591)
T 2vgl_B 216 -----------------EWGQIF---ILDCLSNYNPKDDREA-----------QSIC--------------------ERV 244 (591)
T ss_dssp -----------------HHHHHH---HHHHHHTSCCCSHHHH-----------HHHH--------------------HHH
T ss_pred -----------------CHHHHH---HHHHHHHHCCCCHHHH-----------HHHH--------------------HHH
T ss_conf -----------------257899---9999998679985999-----------9999--------------------999
Q ss_pred HHHHCCCCC--HHHHHHHHHHHHH-----CCCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999568975--6999999998621-----02557---6789999999996104302454899999999999629968222
Q 000441 406 LKILGAKHR--LYDFLSTLSMKCS-----YLLFN---KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG 475 (1508)
Q Consensus 406 lkrL~~~~~--~~e~l~~Ll~RsS-----~lifN---ks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~ 475 (1508)
+..+++.++ .++.++.+.+-.. +-.+. ..-++.|+... . .+. .....+++-|..+...+|.+|..
T Consensus 245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~--~d~--~vr~~aL~~l~~i~~~~p~~~~~ 319 (591)
T 2vgl_B 245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S--GEP--EVQYVALRNINLIVQKRPEILKQ 319 (591)
T ss_dssp TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T--SCH--HHHHHHHHHHHHHHHHCCSTTTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-C--CCC--CHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 998758984999999999999740247887999999999999999996-6--992--08999999999999869698999
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 29999999741141006999999998301036642005512999999895149979899999999962178741139999
Q 000441 476 TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVL 555 (1508)
Q Consensus 476 ~v~eL~~lL~~~~~~~~e~~LkaLak~~k~~~e~~~~~~s~l~~~L~~lal~GtP~qAK~AVr~Laa~~~~~~~~~~~~L 555 (1508)
+...+... .+++..+...+|.++++.+.. .+ -..+...|..|....++.-.+.|++.|+.++..-. .....+
T Consensus 320 ~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~--~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~~~ 391 (591)
T 2vgl_B 320 EIKVFFVK-YNDPIYVKLEKLDIMIRLASQ--AN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAERC 391 (591)
T ss_dssp CTTTTSCC-TTSCHHHHHHHHHHHHHTCCS--ST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHEEC-CCCHHHHHHHHHHHHHHHCCH--HH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCH-HHHHHH
T ss_conf 88755003-699399999999999987786--23----99999999999865799999999999999998574-679999
Q ss_pred HHHHHHHHHCCC-C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998300069-9-82478999999943133324505789999998362157766788888788861467889999999
Q 000441 556 YKRLVDMLEEKT-H-LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKT 633 (1508)
Q Consensus 556 ~~~Lv~~L~~~~-~-l~t~LasLs~Ia~~aP~vfe~~~~~I~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~ 633 (1508)
+..|++.+.... + ....+.+|..|.+..|...+. ++..+..- |.. .....++.
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~-l~~---------------~~~~~~~~----- 446 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCEN-LDS---------------LDEPDARA----- 446 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHT-TTT---------------CCSHHHHH-----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHH-HHH---------------CCCHHHHH-----
T ss_conf 999999983551689999999999999979205789----99999988-874---------------23789999-----
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99852487756644206889999999640287766777984555443699999999842014788899999998211468
Q 000441 634 LVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEI 713 (1508)
Q Consensus 634 Lvn~ll~~~~~~~~~~i~~ll~lL~~i~~~GEl~~~~~tp~~~ksrLRL~Aa~~lLKLa~~~d~~i~~~~f~ll~l~~qD 713 (1508)
.+-|++|--..... ... .+|..+.+. +.. +-...|+++-.++.||.........+.+.+++.....|
T Consensus 447 ~~~wilGey~~~~~-~~~---~~l~~l~~~--~~~-------~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d 513 (591)
T 2vgl_B 447 AMIWIVGEYAERID-NAD---ELLESFLEG--FHD-------ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQD 513 (591)
T ss_dssp HHHHHHHTTCTTCT-THH---HHHHHHSTT--CSS-------SCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCC-CHH---HHHHHHHHH--HCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999970312136-789---999999986--645-------98889999999999999619657999999999986535
Q ss_pred -CCHHHHHH
Q ss_conf -83569999
Q 000441 714 -SFPQAKKL 721 (1508)
Q Consensus 714 -~~~~VR~~ 721 (1508)
..++||.+
T Consensus 514 ~~d~evrdR 522 (591)
T 2vgl_B 514 SDNPDLRDR 522 (591)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
T ss_conf 899679999
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=80.28 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH-HHCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7414553354230100388968999999999998359999624-22399999998310599--92399999999588571
Q 000441 86 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLL 162 (1508)
Q Consensus 86 ~P~lL~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a-~~y~~lw~~fL~R~~Dk--s~~VR~~~V~~~~~iL~ 162 (1508)
.|+....+.+.|-.-|..++..+ ..+.++++.++.. .+. ..+|.+...++....+. ++.+|...++.+..+..
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~---~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 84 DANARREVKNYVLHTLGTETYRP-SSASQCVAGIACA---EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHH---HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999867994788-9999999999984---6762256889999999870889879999999999999987
Q ss_pred CC-CC--CCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 29-99--997678999998761698--367999999999984210178779-----888999997713689369999999
Q 000441 163 TD-PS--RADAPQILTALCDRLLDF--DENVRKQVVAVICDVACHALNSIP-----VETVKLVAERLRDKSVLVKRYTME 232 (1508)
Q Consensus 163 ~~-p~--~~~~~eIi~~L~~rL~D~--DEkVR~aaVkaI~~la~~~l~~Vs-----~elL~~LaeR~RDKK~~VR~eAm~ 232 (1508)
.. +. ......++..|...+.|. +..||.+|+++++.+....-..+. ..++..+.+.+.|....||..|+.
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~ 239 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 45876678679999999998616799988999999999999999999988717899999999998717998899999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999986
Q 000441 233 RLADIFRGC 241 (1508)
Q Consensus 233 ~La~LY~~~ 241 (1508)
.|+.+...+
T Consensus 240 ~l~~l~~~~ 248 (876)
T 1qgr_A 240 NLVKIMSLY 248 (876)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=73.73 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 88999999940741455335423010038896899999999999835999962422399999998310599923999999
Q 000441 75 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 154 (1508)
Q Consensus 75 aHeLI~eL~~~~P~lL~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~~a~~y~~lw~~fL~R~~Dks~~VR~~~V 154 (1508)
+|-.+-.+.+..|+++.-+++.|...|.+.|..+|-.|.+++|.+.. ..+. +.+......-..|.++.||...+
T Consensus 69 ~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~---~~l~~~l~~~L~d~~~~VRk~A~ 142 (591)
T 2vgl_B 69 VYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT---EYLCEPLRKCLKDEDPYVRKTAA 142 (591)
T ss_dssp HHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH---HHHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999998665806899999999977699999999999999875890---7789---99999999981799858999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99588571299999767899999876169836799999999998421017
Q 000441 155 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 204 (1508)
Q Consensus 155 ~~~~~iL~~~p~~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l 204 (1508)
.++..|....|+.-....+++.|...|.|+|..||.+|+.+++++.....
T Consensus 143 ~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 143 VCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999985192414463589999999679984399999999999976378
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=69.71 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC------HHHHCHHHHHHHHHHHCC-CC
Q ss_conf 88999999940741-45533542301003889689999999999983599996------242239999999831059-99
Q 000441 75 YHEVIYDVYRCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA------NNEQFHSVFSEFLKRLTD-RI 146 (1508)
Q Consensus 75 aHeLI~eL~~~~P~-lL~sViPqLe~EL~add~~vRllAT~lLG~Mfs~~gs~------~a~~y~~lw~~fL~R~~D-ks 146 (1508)
+-..+..|+..+|. .+..++|.|-..|..++..+|..|...+|.+...-+.. ....++.+....+.-+.| .+
T Consensus 68 A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~ 147 (1230)
T 1u6g_C 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147 (1230)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999975879899999999999866983889999999999999967974444411788999999999998757884
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 23999999995885712999--997678999998761698367999999999984210178779888999997713689-
Q 000441 147 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS- 223 (1508)
Q Consensus 147 ~~VR~~~V~~~~~iL~~~p~--~~~~~eIi~~L~~rL~D~DEkVR~aaVkaI~~la~~~l~~Vs~elL~~LaeR~RDKK- 223 (1508)
+.+|...+.....++...+. .....+++..|...|.|++..||.+|+.+++.++.......-..++..+.+.+.+..
T Consensus 148 ~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 148 VSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 67999999999999998276778879999999999875996899999999999999856899999999999998616775
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 369999999999999986
Q 000441 224 VLVKRYTMERLADIFRGC 241 (1508)
Q Consensus 224 ~~VR~eAm~~La~LY~~~ 241 (1508)
..+|..|+..++.+....
T Consensus 228 ~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 568999999999999986
Done!