Query 000442
Match_columns 1507
No_of_seqs 573 out of 2938
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-235 6E-240 2174.9 95.9 1352 5-1452 4-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 4E-202 8E-207 1902.6 68.0 766 5-775 28-816 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 1E-187 2E-192 1753.0 62.8 674 62-735 1-674 (674)
4 KOG0161 Myosin class II heavy 100.0 6E-183 1E-187 1789.6 78.9 770 5-804 25-819 (1930)
5 KOG0164 Myosin class I heavy c 100.0 5E-185 1E-189 1590.9 49.0 729 61-806 7-756 (1001)
6 cd01380 MYSc_type_V Myosin mot 100.0 2E-183 4E-188 1725.2 61.8 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 4E-183 8E-188 1714.0 61.3 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 1E-182 2E-187 1718.8 63.4 666 61-731 4-693 (693)
9 KOG0160 Myosin class V heavy c 100.0 1E-182 3E-187 1675.6 57.7 752 60-824 6-758 (862)
10 cd01383 MYSc_type_VIII Myosin 100.0 2E-181 4E-186 1696.6 61.6 656 61-731 7-677 (677)
11 cd01378 MYSc_type_I Myosin mot 100.0 2E-181 5E-186 1702.1 61.3 662 63-731 1-674 (674)
12 KOG0163 Myosin class VI heavy 100.0 6E-179 1E-183 1537.8 72.3 782 8-806 2-835 (1259)
13 cd01385 MYSc_type_IX Myosin mo 100.0 4E-180 8E-185 1691.9 63.2 662 62-731 7-688 (692)
14 cd01387 MYSc_type_XV Myosin mo 100.0 4E-180 8E-185 1688.4 61.7 660 63-731 2-677 (677)
15 cd01382 MYSc_type_VI Myosin mo 100.0 1E-179 2E-184 1693.8 62.0 664 61-731 3-716 (717)
16 cd01379 MYSc_type_III Myosin m 100.0 2E-177 4E-182 1654.7 63.4 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 4E-176 8E-181 1664.4 62.7 667 61-732 5-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 2E-177 4E-182 1526.3 43.8 695 60-765 16-725 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 2E-174 5E-179 1654.1 62.5 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 8E-174 2E-178 1640.5 60.8 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 8E-166 2E-170 1598.3 52.0 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-115 5E-120 1104.2 29.2 805 61-874 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1.1E-30 2.4E-35 310.8 23.0 279 1152-1497 595-881 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 2.5E-27 5.4E-32 233.0 6.5 105 1328-1435 1-105 (105)
25 KOG0161 Myosin class II heavy 99.3 3.5E-08 7.5E-13 134.7 44.8 617 235-918 218-895 (1930)
26 cd01363 Motor_domain Myosin an 98.7 2.4E-08 5.1E-13 109.3 6.0 90 132-230 8-98 (186)
27 KOG0160 Myosin class V heavy c 98.4 1E-06 2.3E-11 112.4 11.0 86 784-872 673-758 (862)
28 COG5022 Myosin heavy chain [Cy 98.4 0.00013 2.8E-09 96.2 29.3 88 785-872 746-834 (1463)
29 PF02736 Myosin_N: Myosin N-te 98.2 3E-06 6.4E-11 68.4 6.5 41 10-50 1-41 (42)
30 KOG0520 Uncharacterized conser 98.2 1.9E-06 4.2E-11 109.8 7.4 127 735-878 809-937 (975)
31 KOG4229 Myosin VII, myosin IXB 98.0 2.2E-06 4.8E-11 112.2 1.1 215 604-826 790-1008(1062)
32 KOG0520 Uncharacterized conser 97.9 8.1E-06 1.8E-10 104.3 5.7 130 737-872 757-906 (975)
33 KOG1029 Endocytic adaptor prot 97.6 0.03 6.4E-07 69.5 28.6 10 1422-1431 1053-1062(1118)
34 KOG1029 Endocytic adaptor prot 97.3 0.035 7.7E-07 68.8 24.0 23 1349-1372 827-849 (1118)
35 KOG0971 Microtubule-associated 97.3 0.5 1.1E-05 60.2 33.5 27 1299-1325 898-924 (1243)
36 KOG0971 Microtubule-associated 97.3 0.1 2.3E-06 66.0 27.4 46 983-1028 394-439 (1243)
37 KOG0164 Myosin class I heavy c 97.0 0.0036 7.8E-08 76.8 11.4 81 785-875 697-787 (1001)
38 KOG0933 Structural maintenance 97.0 0.26 5.5E-06 63.7 27.7 43 922-964 735-777 (1174)
39 TIGR02169 SMC_prok_A chromosom 97.0 1.1 2.4E-05 63.5 38.2 8 1175-1182 616-623 (1164)
40 PRK11637 AmiB activator; Provi 96.9 0.21 4.6E-06 62.2 26.7 13 894-906 73-85 (428)
41 TIGR02169 SMC_prok_A chromosom 96.9 2 4.4E-05 60.8 39.8 7 520-526 38-44 (1164)
42 PRK11637 AmiB activator; Provi 96.9 0.37 8E-06 60.1 28.6 11 896-906 82-92 (428)
43 KOG0250 DNA repair protein RAD 96.9 0.38 8.3E-06 63.3 28.4 16 809-824 179-194 (1074)
44 KOG0996 Structural maintenance 96.8 0.75 1.6E-05 60.7 29.8 48 1383-1433 1169-1219(1293)
45 KOG0163 Myosin class VI heavy 96.8 1 2.2E-05 56.4 29.3 56 792-855 781-836 (1259)
46 KOG0933 Structural maintenance 96.7 2.4 5.1E-05 55.4 32.1 31 125-178 20-50 (1174)
47 PF09726 Macoilin: Transmembra 96.6 1.2 2.7E-05 58.1 30.7 23 1040-1062 628-650 (697)
48 PF07888 CALCOCO1: Calcium bin 96.6 0.53 1.1E-05 58.6 26.0 12 662-673 42-53 (546)
49 PF00612 IQ: IQ calmodulin-bin 96.6 0.0027 5.8E-08 43.2 3.6 20 833-852 2-21 (21)
50 KOG0996 Structural maintenance 96.6 4.7 0.0001 53.7 37.0 8 722-729 251-258 (1293)
51 PRK02224 chromosome segregatio 96.5 2.2 4.8E-05 58.5 33.9 9 1439-1447 824-832 (880)
52 TIGR02168 SMC_prok_B chromosom 96.4 3.3 7.2E-05 58.6 36.5 18 151-168 25-42 (1179)
53 COG1196 Smc Chromosome segrega 96.4 8.8 0.00019 54.2 39.7 8 1175-1182 609-616 (1163)
54 PF00612 IQ: IQ calmodulin-bin 96.4 0.004 8.6E-08 42.4 3.1 20 785-804 2-21 (21)
55 PF14662 CCDC155: Coiled-coil 96.3 2 4.3E-05 46.3 24.5 72 986-1057 103-188 (193)
56 COG4942 Membrane-bound metallo 96.3 1.7 3.7E-05 52.6 26.8 31 1028-1058 218-248 (420)
57 PF09726 Macoilin: Transmembra 96.3 0.54 1.2E-05 61.3 24.6 33 986-1018 546-578 (697)
58 COG1196 Smc Chromosome segrega 96.2 5.5 0.00012 56.2 35.6 138 153-328 28-169 (1163)
59 PRK04863 mukB cell division pr 96.2 5.9 0.00013 56.3 35.2 12 666-677 125-136 (1486)
60 KOG2128 Ras GTPase-activating 96.2 0.053 1.2E-06 72.2 14.5 117 762-878 510-645 (1401)
61 COG4372 Uncharacterized protei 96.1 4 8.6E-05 47.8 27.7 73 985-1057 210-282 (499)
62 COG1579 Zn-ribbon protein, pos 96.1 1.6 3.6E-05 49.1 23.9 50 984-1033 88-137 (239)
63 KOG0250 DNA repair protein RAD 96.1 8.4 0.00018 51.4 38.7 73 989-1061 391-463 (1074)
64 PF08317 Spc7: Spc7 kinetochor 96.0 2.8 6E-05 50.3 27.1 84 983-1066 207-294 (325)
65 KOG0999 Microtubule-associated 96.0 0.75 1.6E-05 55.7 21.2 58 1006-1063 149-216 (772)
66 KOG0925 mRNA splicing factor A 95.9 0.0067 1.5E-07 71.9 4.0 56 102-166 24-79 (699)
67 PRK04863 mukB cell division pr 95.9 14 0.0003 52.7 36.3 14 1043-1056 515-528 (1486)
68 PF00261 Tropomyosin: Tropomyo 95.8 2.9 6.4E-05 47.7 25.2 76 986-1061 142-217 (237)
69 KOG1003 Actin filament-coating 95.7 2.9 6.3E-05 44.9 22.0 76 986-1061 110-185 (205)
70 PF15070 GOLGA2L5: Putative go 95.7 2.5 5.5E-05 54.5 26.3 13 1465-1477 594-606 (617)
71 KOG4643 Uncharacterized coiled 95.7 3.9 8.5E-05 53.4 27.1 50 885-938 404-453 (1195)
72 PHA02562 46 endonuclease subun 95.7 2.4 5.2E-05 54.9 27.0 28 984-1011 298-325 (562)
73 KOG2128 Ras GTPase-activating 95.5 0.16 3.6E-06 67.9 14.6 91 765-855 541-645 (1401)
74 KOG4643 Uncharacterized coiled 95.3 8 0.00017 50.7 28.0 44 921-964 408-451 (1195)
75 PF12718 Tropomyosin_1: Tropom 95.3 3.5 7.7E-05 43.1 21.3 20 923-942 37-56 (143)
76 PRK09039 hypothetical protein; 95.3 2.1 4.5E-05 51.6 22.3 23 894-916 58-80 (343)
77 PF00261 Tropomyosin: Tropomyo 95.2 7.5 0.00016 44.4 25.9 56 1002-1057 172-227 (237)
78 PRK03918 chromosome segregatio 95.2 4.4 9.5E-05 55.6 28.1 18 152-169 26-43 (880)
79 PF04091 Sec15: Exocyst comple 95.2 0.25 5.3E-06 58.7 13.8 133 1297-1430 176-311 (311)
80 PRK09039 hypothetical protein; 95.2 1.4 3.1E-05 53.0 20.3 19 921-939 74-92 (343)
81 KOG0980 Actin-binding protein 95.1 2.9 6.4E-05 53.9 23.1 27 885-911 354-380 (980)
82 PF08317 Spc7: Spc7 kinetochor 95.1 7.7 0.00017 46.5 26.3 12 1042-1053 277-288 (325)
83 KOG0995 Centromere-associated 95.0 13 0.00029 46.3 30.9 55 985-1039 425-479 (581)
84 smart00787 Spc7 Spc7 kinetocho 94.9 9.5 0.00021 45.3 25.9 66 1001-1066 220-289 (312)
85 KOG0994 Extracellular matrix g 94.9 8.2 0.00018 51.1 26.1 38 84-121 192-229 (1758)
86 PF13851 GAS: Growth-arrest sp 94.7 7.1 0.00015 43.3 22.9 68 987-1054 95-163 (201)
87 smart00015 IQ Short calmodulin 94.5 0.041 8.9E-07 39.6 3.2 21 832-852 3-23 (26)
88 KOG1853 LIS1-interacting prote 94.5 4.9 0.00011 44.4 20.0 23 1039-1061 162-184 (333)
89 KOG0612 Rho-associated, coiled 94.5 8.7 0.00019 51.6 25.8 36 544-579 213-253 (1317)
90 KOG0612 Rho-associated, coiled 94.5 5.9 0.00013 53.1 24.4 30 1320-1349 978-1015(1317)
91 PF06785 UPF0242: Uncharacteri 94.5 7.9 0.00017 44.7 22.4 24 1040-1063 200-223 (401)
92 TIGR00606 rad50 rad50. This fa 94.5 13 0.00028 53.3 30.4 21 150-170 29-49 (1311)
93 PRK03918 chromosome segregatio 94.5 17 0.00038 49.8 31.1 14 1438-1451 824-837 (880)
94 smart00015 IQ Short calmodulin 94.4 0.04 8.6E-07 39.7 2.9 21 784-804 3-23 (26)
95 COG1579 Zn-ribbon protein, pos 94.4 4.2 9.1E-05 45.9 20.1 6 1132-1137 226-231 (239)
96 PF12128 DUF3584: Protein of u 94.4 37 0.00079 48.3 39.7 27 1425-1452 1054-1081(1201)
97 PF04849 HAP1_N: HAP1 N-termin 94.3 14 0.00029 43.3 24.5 51 999-1049 234-284 (306)
98 PF15070 GOLGA2L5: Putative go 94.1 9.8 0.00021 49.3 25.3 30 1031-1060 199-228 (617)
99 KOG0994 Extracellular matrix g 94.1 30 0.00065 46.2 37.1 51 1011-1061 1694-1744(1758)
100 PTZ00014 myosin-A; Provisional 94.0 0.14 3E-06 68.0 8.9 41 833-873 778-818 (821)
101 TIGR00606 rad50 rad50. This fa 94.0 10 0.00022 54.3 27.9 9 306-314 140-148 (1311)
102 PF13207 AAA_17: AAA domain; P 93.9 0.038 8.2E-07 55.7 2.8 23 151-173 1-23 (121)
103 KOG4673 Transcription factor T 93.8 25 0.00055 44.4 30.8 51 891-941 582-632 (961)
104 KOG1103 Predicted coiled-coil 93.8 16 0.00035 42.1 24.9 39 1023-1061 255-293 (561)
105 KOG0964 Structural maintenance 93.8 28 0.0006 46.0 27.3 77 986-1062 412-495 (1200)
106 PF15066 CAGE1: Cancer-associa 93.7 21 0.00046 43.2 25.4 15 399-413 51-65 (527)
107 PF15254 CCDC14: Coiled-coil d 93.6 9.5 0.0002 48.9 22.8 31 992-1022 494-524 (861)
108 COG4372 Uncharacterized protei 93.6 19 0.00042 42.5 27.1 20 1028-1047 260-279 (499)
109 COG3883 Uncharacterized protei 93.5 17 0.00037 41.6 23.0 57 884-944 40-96 (265)
110 KOG0977 Nuclear envelope prote 93.5 9.4 0.0002 48.0 22.6 30 1032-1061 340-369 (546)
111 PRK07196 fliI flagellum-specif 93.5 0.2 4.2E-06 61.7 8.3 43 131-173 137-179 (434)
112 KOG0977 Nuclear envelope prote 93.3 8.2 0.00018 48.5 21.6 19 1170-1188 313-331 (546)
113 PF05911 DUF869: Plant protein 93.3 19 0.00041 47.7 26.0 16 1048-1063 190-205 (769)
114 KOG0976 Rho/Rac1-interacting s 93.2 34 0.00073 44.0 33.4 38 987-1024 325-362 (1265)
115 PF04849 HAP1_N: HAP1 N-termin 93.0 8.1 0.00018 45.0 19.6 14 1025-1038 274-287 (306)
116 PF05667 DUF812: Protein of un 92.9 19 0.00041 46.5 24.8 15 549-565 79-93 (594)
117 PF14662 CCDC155: Coiled-coil 92.9 16 0.00036 39.5 26.2 62 990-1051 128-189 (193)
118 PF13401 AAA_22: AAA domain; P 92.8 0.07 1.5E-06 54.4 2.6 29 147-175 2-30 (131)
119 PF05701 WEMBL: Weak chloropla 92.6 25 0.00054 45.1 25.5 19 930-948 283-301 (522)
120 KOG1003 Actin filament-coating 92.6 18 0.00038 39.2 22.2 69 990-1058 128-196 (205)
121 KOG0982 Centrosomal protein Nu 92.5 23 0.00049 42.5 22.4 41 986-1026 305-345 (502)
122 PF13191 AAA_16: AAA ATPase do 92.5 0.081 1.8E-06 57.4 2.8 34 143-176 18-51 (185)
123 PRK10884 SH3 domain-containing 92.3 1.5 3.1E-05 48.7 12.2 77 984-1063 92-168 (206)
124 smart00787 Spc7 Spc7 kinetocho 92.3 30 0.00065 41.2 25.8 9 670-678 9-17 (312)
125 PF13238 AAA_18: AAA domain; P 92.3 0.088 1.9E-06 53.3 2.5 22 152-173 1-22 (129)
126 PRK01156 chromosome segregatio 92.2 34 0.00073 47.2 28.0 32 1030-1061 412-443 (895)
127 KOG0982 Centrosomal protein Nu 92.0 34 0.00073 41.2 24.1 24 1039-1062 408-431 (502)
128 cd02019 NK Nucleoside/nucleoti 92.0 0.12 2.7E-06 46.7 2.9 22 152-173 2-23 (69)
129 TIGR03015 pepcterm_ATPase puta 91.9 0.17 3.7E-06 58.8 4.6 28 147-174 41-68 (269)
130 KOG0995 Centromere-associated 91.9 31 0.00066 43.3 23.4 30 986-1015 333-362 (581)
131 TIGR02322 phosphon_PhnN phosph 91.9 0.11 2.4E-06 56.4 2.9 25 150-174 2-26 (179)
132 PF10174 Cast: RIM-binding pro 91.8 37 0.00081 45.1 25.9 36 921-956 336-371 (775)
133 cd00009 AAA The AAA+ (ATPases 91.8 0.2 4.3E-06 51.3 4.6 30 145-174 15-44 (151)
134 PF10481 CENP-F_N: Cenp-F N-te 91.7 7.4 0.00016 43.8 16.4 73 993-1065 61-133 (307)
135 KOG4360 Uncharacterized coiled 91.6 11 0.00024 46.0 18.9 31 1032-1062 273-303 (596)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.6 18 0.0004 37.3 20.1 63 997-1062 64-126 (132)
137 PF05667 DUF812: Protein of un 91.5 13 0.00029 47.9 21.1 51 645-706 59-109 (594)
138 KOG2129 Uncharacterized conser 91.5 37 0.0008 40.5 25.4 28 983-1010 251-278 (552)
139 KOG0964 Structural maintenance 91.4 28 0.00061 45.9 23.1 15 1414-1428 946-960 (1200)
140 PF04156 IncA: IncA protein; 91.3 9.2 0.0002 42.1 17.3 57 1001-1057 132-188 (191)
141 PF00038 Filament: Intermediat 91.2 39 0.00084 40.2 31.4 12 795-806 14-25 (312)
142 PF05701 WEMBL: Weak chloropla 91.1 56 0.0012 41.9 28.1 7 898-904 174-180 (522)
143 PF15619 Lebercilin: Ciliary p 91.1 28 0.00061 38.4 24.8 66 987-1052 120-189 (194)
144 TIGR00150 HI0065_YjeE ATPase, 91.1 0.28 6.1E-06 50.4 4.6 28 147-174 20-47 (133)
145 COG0444 DppD ABC-type dipeptid 91.0 0.13 2.8E-06 59.8 2.4 28 147-174 29-56 (316)
146 PF10481 CENP-F_N: Cenp-F N-te 90.9 26 0.00056 39.7 19.5 36 984-1019 94-129 (307)
147 KOG4593 Mitotic checkpoint pro 90.8 39 0.00084 43.3 23.2 25 1411-1435 631-662 (716)
148 PRK09270 nucleoside triphospha 90.8 0.37 7.9E-06 54.8 5.8 34 145-178 29-62 (229)
149 cd00820 PEPCK_HprK Phosphoenol 90.8 0.19 4.1E-06 49.6 3.0 23 148-170 14-36 (107)
150 cd01918 HprK_C HprK/P, the bif 90.8 0.19 4E-06 52.7 3.0 24 149-172 14-37 (149)
151 KOG1853 LIS1-interacting prote 90.7 32 0.00068 38.4 19.7 20 1044-1063 160-179 (333)
152 PRK05480 uridine/cytidine kina 90.7 0.2 4.4E-06 55.9 3.6 27 147-173 4-30 (209)
153 COG0194 Gmk Guanylate kinase [ 90.7 0.17 3.6E-06 54.5 2.6 25 149-173 4-28 (191)
154 PF10174 Cast: RIM-binding pro 90.7 24 0.00053 46.8 22.6 25 1024-1048 382-406 (775)
155 PRK06696 uridine kinase; Valid 90.6 0.29 6.3E-06 55.3 4.8 31 145-175 18-48 (223)
156 KOG2129 Uncharacterized conser 90.6 23 0.00049 42.2 19.5 9 956-964 208-216 (552)
157 PF10168 Nup88: Nuclear pore c 90.5 9.5 0.00021 50.4 19.0 21 621-641 421-441 (717)
158 PF00004 AAA: ATPase family as 90.5 0.17 3.6E-06 51.5 2.4 23 152-174 1-23 (132)
159 cd01131 PilT Pilus retraction 90.5 0.18 3.9E-06 55.9 2.8 25 151-175 3-27 (198)
160 PRK13833 conjugal transfer pro 90.4 0.27 5.9E-06 58.3 4.4 34 140-175 137-170 (323)
161 PRK00300 gmk guanylate kinase; 90.4 0.18 4E-06 56.0 2.8 26 148-173 4-29 (205)
162 COG5185 HEC1 Protein involved 90.4 33 0.00071 41.6 20.9 30 986-1015 369-398 (622)
163 PF01583 APS_kinase: Adenylyls 90.3 0.27 5.9E-06 51.9 3.8 29 149-177 2-30 (156)
164 cd02023 UMPK Uridine monophosp 90.3 0.19 4.1E-06 55.6 2.8 22 152-173 2-23 (198)
165 PF09728 Taxilin: Myosin-like 90.2 46 0.001 39.6 26.7 31 1032-1062 235-265 (309)
166 cd01129 PulE-GspE PulE/GspE Th 90.2 0.3 6.5E-06 56.7 4.5 34 140-174 72-105 (264)
167 KOG0978 E3 ubiquitin ligase in 90.2 72 0.0016 41.6 34.6 74 990-1063 543-616 (698)
168 KOG0999 Microtubule-associated 90.0 58 0.0013 40.3 27.0 13 1384-1396 655-667 (772)
169 PF00485 PRK: Phosphoribulokin 89.9 0.19 4.2E-06 55.4 2.5 26 152-177 2-27 (194)
170 KOG4809 Rab6 GTPase-interactin 89.8 41 0.00089 41.7 21.5 49 896-944 313-361 (654)
171 PF15619 Lebercilin: Ciliary p 89.8 36 0.00078 37.6 22.9 29 994-1022 120-148 (194)
172 TIGR03420 DnaA_homol_Hda DnaA 89.7 0.47 1E-05 53.5 5.5 40 136-175 25-64 (226)
173 PF04437 RINT1_TIP1: RINT-1 / 89.7 3.8 8.2E-05 52.2 14.2 125 1297-1427 352-491 (494)
174 KOG0979 Structural maintenance 89.6 81 0.0018 42.2 25.2 28 1301-1328 836-864 (1072)
175 COG1340 Uncharacterized archae 89.6 47 0.001 38.7 25.9 75 986-1060 180-254 (294)
176 PTZ00301 uridine kinase; Provi 89.5 0.24 5.2E-06 55.3 2.9 23 152-174 6-28 (210)
177 COG1660 Predicted P-loop-conta 89.5 0.2 4.4E-06 56.1 2.2 19 151-169 3-21 (286)
178 TIGR00235 udk uridine kinase. 89.5 0.29 6.2E-06 54.7 3.5 28 147-174 4-31 (207)
179 KOG0249 LAR-interacting protei 89.5 29 0.00062 44.2 20.3 20 1349-1376 756-775 (916)
180 PF09755 DUF2046: Uncharacteri 89.5 50 0.0011 38.7 26.5 24 1040-1063 177-200 (310)
181 PF13851 GAS: Growth-arrest sp 89.4 39 0.00085 37.5 20.8 19 923-941 57-75 (201)
182 PF15397 DUF4618: Domain of un 89.4 45 0.00098 38.2 25.8 194 871-1064 2-223 (258)
183 PRK08233 hypothetical protein; 89.3 0.22 4.7E-06 54.0 2.3 25 150-174 4-28 (182)
184 PRK05541 adenylylsulfate kinas 89.3 0.27 5.8E-06 53.3 3.0 29 147-175 5-33 (176)
185 PRK04778 septation ring format 89.3 82 0.0018 41.0 30.6 136 924-1059 278-422 (569)
186 TIGR01843 type_I_hlyD type I s 89.2 56 0.0012 40.5 24.0 26 993-1018 204-229 (423)
187 PRK08972 fliI flagellum-specif 89.2 0.77 1.7E-05 56.4 7.0 41 132-172 145-185 (444)
188 TIGR02173 cyt_kin_arch cytidyl 89.1 0.25 5.3E-06 53.0 2.5 23 151-173 2-24 (171)
189 KOG0980 Actin-binding protein 89.1 90 0.0019 41.2 33.3 17 609-625 201-217 (980)
190 smart00382 AAA ATPases associa 89.0 0.25 5.4E-06 50.1 2.4 28 149-176 2-29 (148)
191 PRK07261 topology modulation p 89.0 0.27 5.9E-06 53.1 2.8 23 151-173 2-24 (171)
192 cd02020 CMPK Cytidine monophos 88.9 0.29 6.4E-06 50.9 2.9 22 152-173 2-23 (147)
193 cd02028 UMPK_like Uridine mono 88.9 0.29 6.4E-06 53.3 2.9 24 152-175 2-25 (179)
194 PF03668 ATP_bind_2: P-loop AT 88.8 0.27 5.8E-06 56.7 2.6 20 150-169 2-21 (284)
195 KOG0946 ER-Golgi vesicle-tethe 88.8 58 0.0013 42.3 22.5 28 553-580 389-416 (970)
196 PRK06762 hypothetical protein; 88.8 0.34 7.4E-06 51.9 3.3 25 149-173 2-26 (166)
197 PRK06547 hypothetical protein; 88.7 0.54 1.2E-05 50.8 4.8 29 145-173 11-39 (172)
198 cd02025 PanK Pantothenate kina 88.7 0.29 6.3E-06 55.2 2.8 23 152-174 2-24 (220)
199 PF15254 CCDC14: Coiled-coil d 88.5 63 0.0014 42.0 22.6 20 922-941 428-447 (861)
200 cd00227 CPT Chloramphenicol (C 88.5 0.36 7.7E-06 52.3 3.2 25 149-173 2-26 (175)
201 PRK08118 topology modulation p 88.4 0.35 7.5E-06 52.1 3.1 25 150-174 2-26 (167)
202 KOG4360 Uncharacterized coiled 88.3 33 0.00071 42.2 19.2 73 986-1058 220-292 (596)
203 PF05729 NACHT: NACHT domain 88.1 0.41 9E-06 50.6 3.4 27 151-177 2-28 (166)
204 PF00910 RNA_helicase: RNA hel 88.1 0.35 7.6E-06 47.9 2.6 25 152-176 1-25 (107)
205 PRK14737 gmk guanylate kinase; 88.0 0.32 6.9E-06 53.3 2.5 26 148-173 3-28 (186)
206 cd01130 VirB11-like_ATPase Typ 88.0 0.33 7.1E-06 53.3 2.6 26 149-174 25-50 (186)
207 PRK12402 replication factor C 87.9 0.61 1.3E-05 56.0 5.1 56 117-174 6-61 (337)
208 PRK00131 aroK shikimate kinase 87.9 0.42 9.1E-06 51.3 3.3 26 148-173 3-28 (175)
209 PF07111 HCR: Alpha helical co 87.8 97 0.0021 40.0 24.8 6 838-843 72-77 (739)
210 KOG0018 Structural maintenance 87.7 1.2E+02 0.0026 41.0 30.9 50 987-1036 404-453 (1141)
211 cd00071 GMPK Guanosine monopho 87.6 0.32 6.8E-06 50.6 2.1 22 152-173 2-23 (137)
212 cd02024 NRK1 Nicotinamide ribo 87.6 0.35 7.6E-06 52.9 2.5 22 152-173 2-23 (187)
213 PRK01156 chromosome segregatio 87.6 94 0.002 42.9 26.4 20 151-170 25-44 (895)
214 PF07724 AAA_2: AAA domain (Cd 87.5 0.44 9.5E-06 51.5 3.2 24 151-174 5-28 (171)
215 PF08614 ATG16: Autophagy prot 87.5 4.2 9E-05 45.0 10.9 59 1003-1061 120-178 (194)
216 PHA02544 44 clamp loader, smal 87.5 0.56 1.2E-05 56.0 4.4 55 117-173 12-67 (316)
217 PRK10078 ribose 1,5-bisphospho 87.4 0.33 7.1E-06 53.2 2.2 24 150-173 3-26 (186)
218 TIGR02782 TrbB_P P-type conjug 87.4 0.41 9E-06 56.5 3.1 27 149-175 132-158 (299)
219 PF12846 AAA_10: AAA-like doma 87.3 0.44 9.6E-06 56.0 3.4 29 149-177 1-29 (304)
220 PRK08472 fliI flagellum-specif 87.3 1.9 4.1E-05 53.3 8.7 42 132-173 140-181 (434)
221 TIGR00554 panK_bact pantothena 87.2 0.97 2.1E-05 53.0 6.0 31 146-176 59-89 (290)
222 PRK06315 type III secretion sy 87.2 1.2 2.5E-05 55.2 6.9 40 134-173 149-188 (442)
223 PRK08084 DNA replication initi 87.2 0.8 1.7E-05 52.2 5.2 40 136-175 32-71 (235)
224 PRK09099 type III secretion sy 87.1 1.4 3E-05 54.6 7.5 41 133-173 147-187 (441)
225 TIGR01420 pilT_fam pilus retra 87.1 0.4 8.6E-06 58.0 2.8 34 140-174 114-147 (343)
226 KOG0018 Structural maintenance 87.1 1.3E+02 0.0028 40.7 32.3 45 626-674 26-75 (1141)
227 PF13245 AAA_19: Part of AAA d 87.1 0.72 1.6E-05 42.7 3.9 28 148-175 9-36 (76)
228 PF12325 TMF_TATA_bd: TATA ele 87.0 37 0.0008 34.4 16.2 7 1009-1015 78-84 (120)
229 TIGR01313 therm_gnt_kin carboh 87.0 0.34 7.3E-06 51.7 1.9 23 152-174 1-23 (163)
230 PRK14738 gmk guanylate kinase; 87.0 0.45 9.8E-06 53.1 3.0 26 147-172 11-36 (206)
231 PRK00889 adenylylsulfate kinas 86.9 0.64 1.4E-05 50.3 4.0 29 148-176 3-31 (175)
232 COG4172 ABC-type uncharacteriz 86.8 0.37 7.9E-06 57.2 2.1 28 149-176 36-63 (534)
233 COG4026 Uncharacterized protei 86.7 6.7 0.00015 42.6 11.2 28 1029-1056 179-206 (290)
234 PF10168 Nup88: Nuclear pore c 86.6 80 0.0017 42.0 23.4 48 541-591 377-431 (717)
235 KOG1103 Predicted coiled-coil 86.5 47 0.001 38.5 18.2 19 891-909 141-159 (561)
236 TIGR02928 orc1/cdc6 family rep 86.5 0.67 1.5E-05 56.5 4.4 36 140-175 31-66 (365)
237 PRK14961 DNA polymerase III su 86.5 0.99 2.1E-05 55.0 5.8 57 116-174 6-63 (363)
238 PF00038 Filament: Intermediat 86.5 78 0.0017 37.6 32.0 33 884-916 70-102 (312)
239 COG0572 Udk Uridine kinase [Nu 86.5 0.49 1.1E-05 52.5 2.8 23 152-174 11-33 (218)
240 TIGR02524 dot_icm_DotB Dot/Icm 86.5 0.46 1E-05 57.5 2.9 28 148-175 133-160 (358)
241 COG3074 Uncharacterized protei 86.4 6.1 0.00013 35.0 8.7 51 1013-1063 11-61 (79)
242 cd02027 APSK Adenosine 5'-phos 86.3 0.52 1.1E-05 49.7 2.9 24 152-175 2-25 (149)
243 PRK13900 type IV secretion sys 86.3 0.66 1.4E-05 55.6 4.1 25 150-174 161-185 (332)
244 COG1102 Cmk Cytidylate kinase 86.2 0.56 1.2E-05 49.2 2.9 23 152-174 3-25 (179)
245 COG4477 EzrA Negative regulato 86.1 1E+02 0.0022 38.6 25.9 80 983-1062 345-424 (570)
246 PF09730 BicD: Microtubule-ass 86.1 1E+02 0.0022 40.8 23.3 13 1175-1187 393-405 (717)
247 KOG0978 E3 ubiquitin ligase in 86.1 1.2E+02 0.0027 39.5 35.5 77 986-1062 525-601 (698)
248 COG4608 AppF ABC-type oligopep 86.1 0.48 1.1E-05 54.0 2.6 29 147-175 37-65 (268)
249 PRK10751 molybdopterin-guanine 86.0 0.56 1.2E-05 50.6 2.9 27 150-176 7-33 (173)
250 TIGR03263 guanyl_kin guanylate 85.9 0.41 8.8E-06 52.0 1.9 24 150-173 2-25 (180)
251 PF10473 CENP-F_leu_zip: Leuci 85.9 48 0.001 34.6 21.4 9 929-937 25-33 (140)
252 PTZ00112 origin recognition co 85.9 1 2.2E-05 58.9 5.5 32 145-176 777-808 (1164)
253 PRK06217 hypothetical protein; 85.9 0.5 1.1E-05 51.7 2.5 24 151-174 3-26 (183)
254 PF09755 DUF2046: Uncharacteri 85.8 80 0.0017 37.1 26.7 23 1036-1058 180-202 (310)
255 KOG0804 Cytoplasmic Zn-finger 85.8 34 0.00074 41.5 17.3 14 658-671 103-116 (493)
256 PF04111 APG6: Autophagy prote 85.8 4.5 9.8E-05 48.1 10.6 32 1031-1062 103-134 (314)
257 TIGR02525 plasmid_TraJ plasmid 85.8 0.54 1.2E-05 57.0 3.0 27 149-175 149-175 (372)
258 PF10146 zf-C4H2: Zinc finger- 85.7 29 0.00064 39.3 16.3 36 1028-1063 68-103 (230)
259 PF09789 DUF2353: Uncharacteri 85.7 85 0.0018 37.3 26.0 26 1037-1062 192-217 (319)
260 cd01120 RecA-like_NTPases RecA 85.6 0.62 1.3E-05 49.0 3.1 25 152-176 2-26 (165)
261 PF01576 Myosin_tail_1: Myosin 85.6 0.25 5.4E-06 66.6 0.0 56 882-941 32-87 (859)
262 PF06160 EzrA: Septation ring 85.6 42 0.00091 43.5 20.1 164 894-1063 250-422 (560)
263 KOG4809 Rab6 GTPase-interactin 85.4 1E+02 0.0022 38.5 21.2 125 884-1021 333-457 (654)
264 COG1125 OpuBA ABC-type proline 85.4 0.51 1.1E-05 53.0 2.3 25 150-174 28-52 (309)
265 KOG0963 Transcription factor/C 85.4 1.2E+02 0.0026 38.7 25.9 39 1024-1062 314-358 (629)
266 PRK03846 adenylylsulfate kinas 85.3 0.8 1.7E-05 50.7 3.9 31 146-176 21-51 (198)
267 PRK12377 putative replication 85.2 1 2.2E-05 51.6 4.7 44 131-176 85-128 (248)
268 PF00437 T2SE: Type II/IV secr 85.1 0.52 1.1E-05 54.9 2.4 28 148-175 126-153 (270)
269 PRK10884 SH3 domain-containing 85.1 8.1 0.00018 43.0 11.5 70 990-1062 91-160 (206)
270 cd00464 SK Shikimate kinase (S 85.1 0.59 1.3E-05 49.1 2.6 24 151-174 1-24 (154)
271 PF09738 DUF2051: Double stran 85.1 66 0.0014 38.0 19.3 65 988-1052 101-165 (302)
272 PF02367 UPF0079: Uncharacteri 85.0 0.64 1.4E-05 47.2 2.6 27 147-173 13-39 (123)
273 PRK13851 type IV secretion sys 85.0 0.47 1E-05 57.0 2.0 26 149-174 162-187 (344)
274 PRK08903 DnaA regulatory inact 84.8 1.2 2.6E-05 50.4 5.1 30 147-176 40-69 (227)
275 PF05483 SCP-1: Synaptonemal c 84.8 1.3E+02 0.0028 38.7 26.6 196 867-1062 225-426 (786)
276 KOG0979 Structural maintenance 84.7 1.3E+02 0.0028 40.4 23.2 11 1110-1120 486-496 (1072)
277 PF03266 NTPase_1: NTPase; In 84.7 0.67 1.5E-05 49.9 2.8 24 152-175 2-25 (168)
278 KOG4807 F-actin binding protei 84.7 93 0.002 36.9 22.2 63 997-1062 426-488 (593)
279 PRK00411 cdc6 cell division co 84.7 0.97 2.1E-05 55.7 4.7 35 142-176 48-82 (394)
280 PF14197 Cep57_CLD_2: Centroso 84.7 10 0.00023 34.4 9.8 63 990-1052 3-65 (69)
281 smart00333 TUDOR Tudor domain. 84.7 2.6 5.7E-05 36.3 6.0 51 6-56 2-54 (57)
282 PRK10929 putative mechanosensi 84.7 1.7E+02 0.0036 40.9 25.6 22 1040-1061 264-285 (1109)
283 KOG1962 B-cell receptor-associ 84.7 6.2 0.00013 43.7 10.0 54 1011-1064 156-209 (216)
284 PRK13764 ATPase; Provisional 84.6 0.92 2E-05 58.1 4.4 27 149-175 257-283 (602)
285 cd02029 PRK_like Phosphoribulo 84.6 0.75 1.6E-05 52.8 3.2 24 152-175 2-25 (277)
286 PF13671 AAA_33: AAA domain; P 84.6 0.52 1.1E-05 48.9 1.8 23 152-174 2-24 (143)
287 PF12128 DUF3584: Protein of u 84.5 2.1E+02 0.0046 40.9 43.2 25 150-174 18-42 (1201)
288 PRK07721 fliI flagellum-specif 84.5 3.3 7.1E-05 51.5 9.0 42 132-173 141-182 (438)
289 KOG1937 Uncharacterized conser 84.4 83 0.0018 38.3 19.5 178 874-1052 247-428 (521)
290 PLN03025 replication factor C 84.3 1.1 2.4E-05 53.6 4.8 56 117-174 4-59 (319)
291 PF10146 zf-C4H2: Zinc finger- 84.2 38 0.00083 38.4 16.4 60 990-1049 44-103 (230)
292 PRK05688 fliI flagellum-specif 84.2 2.2 4.8E-05 52.8 7.2 42 131-172 150-191 (451)
293 COG0529 CysC Adenylylsulfate k 84.1 1.4 3E-05 47.1 4.6 44 134-178 9-52 (197)
294 TIGR03007 pepcterm_ChnLen poly 84.0 1.4E+02 0.0029 38.2 28.4 34 988-1021 313-346 (498)
295 TIGR01843 type_I_hlyD type I s 84.0 1.2E+02 0.0026 37.5 24.0 26 990-1015 208-233 (423)
296 COG0563 Adk Adenylate kinase a 83.9 0.78 1.7E-05 49.9 2.9 22 152-173 3-24 (178)
297 cd02021 GntK Gluconate kinase 83.9 0.68 1.5E-05 48.6 2.4 22 152-173 2-23 (150)
298 PRK05057 aroK shikimate kinase 83.8 0.81 1.8E-05 49.5 3.0 25 149-173 4-28 (172)
299 PF03205 MobB: Molybdopterin g 83.8 0.82 1.8E-05 47.7 2.9 27 151-177 2-28 (140)
300 KOG0249 LAR-interacting protei 83.8 81 0.0018 40.5 19.9 10 897-906 113-122 (916)
301 PF07111 HCR: Alpha helical co 83.8 1.5E+02 0.0032 38.5 24.1 13 1037-1049 245-257 (739)
302 COG2884 FtsE Predicted ATPase 83.7 0.73 1.6E-05 49.6 2.5 26 148-173 27-52 (223)
303 PRK04182 cytidylate kinase; Pr 83.6 0.71 1.5E-05 49.9 2.5 23 151-173 2-24 (180)
304 TIGR02680 conserved hypothetic 83.6 1.9E+02 0.0041 41.8 26.7 10 1140-1149 607-616 (1353)
305 COG1123 ATPase components of v 83.6 0.61 1.3E-05 58.4 2.1 29 148-176 34-62 (539)
306 PF13555 AAA_29: P-loop contai 83.6 1.1 2.4E-05 39.6 3.1 23 151-173 25-47 (62)
307 PRK15422 septal ring assembly 83.4 7.7 0.00017 35.6 8.3 40 1024-1063 22-61 (79)
308 COG2433 Uncharacterized conser 83.4 11 0.00024 47.2 12.5 77 986-1062 430-509 (652)
309 KOG4674 Uncharacterized conser 83.4 2.5E+02 0.0054 40.8 31.1 20 849-868 661-680 (1822)
310 PRK14956 DNA polymerase III su 83.4 1.2 2.7E-05 55.3 4.6 54 118-175 10-66 (484)
311 PRK09825 idnK D-gluconate kina 83.3 0.89 1.9E-05 49.4 3.1 26 149-174 3-28 (176)
312 PRK04040 adenylate kinase; Pro 83.3 0.81 1.8E-05 50.3 2.8 25 150-174 3-27 (188)
313 TIGR02902 spore_lonB ATP-depen 83.3 1.2 2.7E-05 56.9 4.8 30 144-173 81-110 (531)
314 PF07475 Hpr_kinase_C: HPr Ser 83.3 0.77 1.7E-05 49.0 2.4 23 149-171 18-40 (171)
315 PF05911 DUF869: Plant protein 83.3 94 0.002 41.5 21.6 18 301-318 53-70 (769)
316 PF08614 ATG16: Autophagy prot 83.2 14 0.00031 40.7 12.5 58 989-1046 120-177 (194)
317 KOG4673 Transcription factor T 83.2 1.5E+02 0.0032 38.0 32.3 13 875-887 477-489 (961)
318 TIGR02533 type_II_gspE general 83.2 1 2.2E-05 56.9 3.9 35 139-174 233-267 (486)
319 PF10186 Atg14: UV radiation r 83.1 68 0.0015 37.7 19.2 12 1181-1192 203-214 (302)
320 TIGR01360 aden_kin_iso1 adenyl 83.0 0.88 1.9E-05 49.6 3.0 23 151-173 5-27 (188)
321 PRK06002 fliI flagellum-specif 83.0 1.3 2.8E-05 54.7 4.6 31 141-171 157-187 (450)
322 PRK00440 rfc replication facto 83.0 1.4 3.1E-05 52.4 4.9 55 118-174 9-63 (319)
323 COG0802 Predicted ATPase or ki 83.0 1.9 4.2E-05 44.9 5.1 29 147-175 23-51 (149)
324 PRK15453 phosphoribulokinase; 82.9 0.93 2E-05 52.5 3.1 26 149-174 5-30 (290)
325 COG1124 DppF ABC-type dipeptid 82.7 0.92 2E-05 50.9 2.8 29 147-175 31-59 (252)
326 PHA00729 NTP-binding motif con 82.7 1.6 3.5E-05 49.0 4.8 29 146-174 14-42 (226)
327 PTZ00121 MAEBL; Provisional 82.6 2.3E+02 0.0049 39.7 31.3 231 818-1049 1110-1344(2084)
328 KOG1899 LAR transmembrane tyro 82.5 33 0.00071 43.0 15.7 23 1354-1376 706-728 (861)
329 PF10186 Atg14: UV radiation r 82.4 54 0.0012 38.6 18.1 16 1041-1056 126-141 (302)
330 PF10212 TTKRSYEDQ: Predicted 82.4 1.5E+02 0.0032 37.4 21.7 31 1031-1061 484-514 (518)
331 PRK06761 hypothetical protein; 82.3 0.85 1.9E-05 53.1 2.6 26 150-175 4-29 (282)
332 PRK10869 recombination and rep 82.3 1.7E+02 0.0036 38.0 23.4 23 1036-1058 343-365 (553)
333 PRK13894 conjugal transfer ATP 82.3 0.96 2.1E-05 53.9 3.0 27 149-175 148-174 (319)
334 cd03115 SRP The signal recogni 82.3 1.2 2.7E-05 48.0 3.7 27 151-177 2-28 (173)
335 PRK05416 glmZ(sRNA)-inactivati 82.2 0.87 1.9E-05 53.4 2.6 21 149-169 6-26 (288)
336 PRK14732 coaE dephospho-CoA ki 82.2 1.1 2.4E-05 49.5 3.3 47 152-203 2-53 (196)
337 PF10498 IFT57: Intra-flagella 82.1 50 0.0011 40.1 17.3 8 638-645 62-69 (359)
338 PRK07667 uridine kinase; Provi 82.1 1.6 3.4E-05 48.2 4.5 26 150-175 18-43 (193)
339 PRK13342 recombination factor 82.0 1.6 3.4E-05 54.3 4.9 42 131-173 19-60 (413)
340 cd02034 CooC The accessory pro 81.9 1.3 2.8E-05 44.6 3.4 26 152-177 2-27 (116)
341 COG2204 AtoC Response regulato 81.9 1 2.2E-05 55.6 3.2 66 147-220 162-233 (464)
342 PRK14527 adenylate kinase; Pro 81.9 1.1 2.3E-05 49.3 3.1 28 147-174 4-31 (191)
343 PRK06893 DNA replication initi 81.9 1.9 4.1E-05 49.0 5.2 39 137-176 28-66 (229)
344 TIGR02546 III_secr_ATP type II 81.9 4 8.8E-05 50.6 8.3 41 133-173 129-169 (422)
345 COG4619 ABC-type uncharacteriz 81.8 0.95 2.1E-05 47.7 2.4 26 148-173 28-53 (223)
346 PRK10646 ADP-binding protein; 81.8 0.99 2.1E-05 47.6 2.6 26 149-174 28-53 (153)
347 PRK08727 hypothetical protein; 81.7 1.9 4.1E-05 49.1 5.1 31 146-176 38-68 (233)
348 COG1123 ATPase components of v 81.7 0.76 1.7E-05 57.6 2.0 28 148-175 316-343 (539)
349 PRK06645 DNA polymerase III su 81.7 1.7 3.7E-05 55.0 5.0 57 118-176 13-70 (507)
350 PF04111 APG6: Autophagy prote 81.7 17 0.00036 43.4 13.1 70 993-1062 51-120 (314)
351 PRK14964 DNA polymerase III su 81.4 1.4 2.9E-05 55.5 4.0 56 117-176 4-62 (491)
352 PF07728 AAA_5: AAA domain (dy 81.4 1 2.2E-05 46.6 2.5 22 152-173 2-23 (139)
353 PF09730 BicD: Microtubule-ass 81.4 2E+02 0.0042 38.2 23.9 24 1001-1024 123-146 (717)
354 KOG0056 Heavy metal exporter H 81.3 1.4 3E-05 53.4 3.8 41 148-188 563-603 (790)
355 PF09304 Cortex-I_coil: Cortex 81.3 44 0.00095 32.8 13.0 88 974-1063 5-92 (107)
356 COG4172 ABC-type uncharacteriz 81.3 0.94 2E-05 53.9 2.4 30 147-176 311-340 (534)
357 PRK11281 hypothetical protein; 81.3 2.5E+02 0.0054 39.4 26.6 24 1039-1062 283-306 (1113)
358 TIGR00176 mobB molybdopterin-g 81.2 1.3 2.8E-05 47.1 3.2 26 152-177 2-27 (155)
359 COG4088 Predicted nucleotide k 81.2 1.6 3.4E-05 47.6 3.8 103 151-262 3-111 (261)
360 PRK06936 type III secretion sy 81.1 2.2 4.7E-05 52.7 5.5 43 131-173 144-186 (439)
361 COG1493 HprK Serine kinase of 81.1 1.2 2.5E-05 51.4 3.0 25 149-173 145-169 (308)
362 TIGR02903 spore_lon_C ATP-depe 80.8 1.9 4.1E-05 56.2 5.2 35 141-175 167-201 (615)
363 PRK08356 hypothetical protein; 80.8 0.98 2.1E-05 49.9 2.3 22 150-171 6-27 (195)
364 PRK05896 DNA polymerase III su 80.7 2.2 4.8E-05 54.6 5.6 59 116-176 6-65 (605)
365 TIGR03496 FliI_clade1 flagella 80.6 1.5 3.3E-05 53.9 4.1 39 135-173 123-161 (411)
366 cd03293 ABC_NrtD_SsuB_transpor 80.5 1.1 2.4E-05 50.3 2.7 27 147-173 28-54 (220)
367 PRK09112 DNA polymerase III su 80.5 2 4.3E-05 52.0 4.9 40 136-175 31-71 (351)
368 TIGR01026 fliI_yscN ATPase Fli 80.4 3.5 7.6E-05 51.3 7.1 40 133-172 147-186 (440)
369 TIGR03499 FlhF flagellar biosy 80.3 1.5 3.3E-05 51.4 3.8 45 132-176 169-221 (282)
370 COG2805 PilT Tfp pilus assembl 80.3 1.3 2.8E-05 51.0 3.0 75 87-175 70-151 (353)
371 PRK14528 adenylate kinase; Pro 80.2 1.4 3E-05 48.4 3.2 24 150-173 2-25 (186)
372 TIGR00960 3a0501s02 Type II (G 80.2 1.2 2.6E-05 49.9 2.8 27 147-173 27-53 (216)
373 PRK15093 antimicrobial peptide 80.2 1.2 2.6E-05 53.6 2.9 27 147-173 31-57 (330)
374 TIGR02788 VirB11 P-type DNA tr 80.2 0.96 2.1E-05 53.8 2.1 25 149-173 144-168 (308)
375 PRK15177 Vi polysaccharide exp 80.2 1.2 2.7E-05 49.8 2.9 27 147-173 11-37 (213)
376 TIGR02868 CydC thiol reductant 80.1 0.87 1.9E-05 58.5 1.9 28 147-174 359-386 (529)
377 PF04665 Pox_A32: Poxvirus A32 80.1 1.2 2.7E-05 50.4 2.8 25 151-175 15-39 (241)
378 PRK11308 dppF dipeptide transp 80.1 1.2 2.6E-05 53.5 2.9 27 147-173 39-65 (327)
379 TIGR02680 conserved hypothetic 80.1 3.1E+02 0.0067 39.7 32.0 27 150-176 25-51 (1353)
380 PRK00698 tmk thymidylate kinas 80.1 1.7 3.6E-05 48.1 3.9 28 149-176 3-30 (205)
381 PRK05537 bifunctional sulfate 80.0 1.4 3.1E-05 56.7 3.6 43 131-175 376-418 (568)
382 TIGR02673 FtsE cell division A 80.0 1.2 2.7E-05 49.7 2.8 27 147-173 26-52 (214)
383 PRK09111 DNA polymerase III su 80.0 1.1 2.5E-05 57.7 2.8 58 117-176 15-73 (598)
384 PF03193 DUF258: Protein of un 80.0 1.4 3E-05 47.0 2.9 25 148-172 34-58 (161)
385 PF00308 Bac_DnaA: Bacterial d 79.9 2.2 4.7E-05 48.1 4.7 42 135-176 18-61 (219)
386 TIGR01166 cbiO cobalt transpor 79.9 1.3 2.8E-05 48.6 2.9 26 147-172 16-41 (190)
387 TIGR02881 spore_V_K stage V sp 79.9 1.4 3.1E-05 51.0 3.3 31 147-177 40-70 (261)
388 PF00625 Guanylate_kin: Guanyl 79.8 1.3 2.9E-05 48.2 2.9 26 149-174 2-27 (183)
389 cd01983 Fer4_NifH The Fer4_Nif 79.7 1.7 3.7E-05 41.1 3.3 25 152-176 2-26 (99)
390 KOG1899 LAR transmembrane tyro 79.6 63 0.0014 40.7 16.7 25 893-917 122-146 (861)
391 PF00005 ABC_tran: ABC transpo 79.6 1.1 2.5E-05 46.0 2.2 26 148-173 10-35 (137)
392 PRK15079 oligopeptide ABC tran 79.6 1.2 2.7E-05 53.4 2.8 27 147-173 45-71 (331)
393 cd03225 ABC_cobalt_CbiO_domain 79.6 1.4 2.9E-05 49.3 3.0 27 147-173 25-51 (211)
394 TIGR03497 FliI_clade2 flagella 79.6 3.7 8.1E-05 50.6 6.9 36 138-173 126-161 (413)
395 PRK14974 cell division protein 79.5 2.8 6E-05 50.3 5.6 31 147-177 138-168 (336)
396 PRK05922 type III secretion sy 79.5 2.1 4.6E-05 52.8 4.7 42 132-173 140-181 (434)
397 cd03259 ABC_Carb_Solutes_like 79.4 1.4 3E-05 49.4 2.9 27 147-173 24-50 (213)
398 TIGR00455 apsK adenylylsulfate 79.4 2.2 4.7E-05 46.6 4.4 29 147-175 16-44 (184)
399 TIGR00064 ftsY signal recognit 79.4 2.9 6.3E-05 48.8 5.6 46 132-177 46-100 (272)
400 cd03260 ABC_PstB_phosphate_tra 79.3 1.4 3E-05 49.8 3.0 27 147-173 24-50 (227)
401 PRK13768 GTPase; Provisional 79.3 1.5 3.3E-05 50.5 3.3 27 151-177 4-30 (253)
402 cd01124 KaiC KaiC is a circadi 79.2 1.5 3.3E-05 47.7 3.1 27 151-177 1-27 (187)
403 PRK09473 oppD oligopeptide tra 79.2 1.2 2.7E-05 53.4 2.6 27 147-173 40-66 (330)
404 PRK08116 hypothetical protein; 79.2 2.6 5.5E-05 49.1 5.1 45 132-176 96-141 (268)
405 COG3883 Uncharacterized protei 79.2 1.3E+02 0.0028 34.8 23.8 59 884-946 47-105 (265)
406 KOG0239 Kinesin (KAR3 subfamil 79.2 74 0.0016 41.9 18.6 39 987-1025 243-281 (670)
407 TIGR01359 UMP_CMP_kin_fam UMP- 79.1 1.4 3E-05 47.9 2.8 23 152-174 2-24 (183)
408 COG2274 SunT ABC-type bacterio 79.1 1 2.2E-05 59.2 2.0 28 148-175 498-525 (709)
409 cd03116 MobB Molybdenum is an 79.1 1.8 4E-05 46.1 3.6 28 150-177 2-29 (159)
410 PRK12608 transcription termina 79.0 1.8 4E-05 52.1 3.9 42 134-175 118-159 (380)
411 KOG4302 Microtubule-associated 78.9 2.1E+02 0.0046 37.4 22.0 138 926-1063 101-255 (660)
412 PF00158 Sigma54_activat: Sigm 78.9 1.3 2.8E-05 47.7 2.4 25 147-171 20-44 (168)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 78.9 1.4 3.1E-05 49.4 2.9 27 147-173 28-54 (218)
414 TIGR03608 L_ocin_972_ABC putat 78.8 1.4 3.1E-05 48.9 2.8 26 148-173 23-48 (206)
415 TIGR00678 holB DNA polymerase 78.8 2.6 5.5E-05 46.2 4.7 36 140-175 4-40 (188)
416 PRK05342 clpX ATP-dependent pr 78.8 2.3 5E-05 52.5 4.8 63 111-173 59-132 (412)
417 PF03215 Rad17: Rad17 cell cyc 78.8 1.8 3.8E-05 55.0 3.9 58 116-173 9-69 (519)
418 PRK10416 signal recognition pa 78.8 1.9 4.1E-05 51.4 4.0 31 147-177 112-142 (318)
419 cd02026 PRK Phosphoribulokinas 78.7 1.4 3E-05 51.4 2.7 22 152-173 2-23 (273)
420 cd03229 ABC_Class3 This class 78.7 1.5 3.3E-05 47.6 2.9 27 147-173 24-50 (178)
421 PRK04220 2-phosphoglycerate ki 78.6 2.3 4.9E-05 49.9 4.4 27 147-173 90-116 (301)
422 PRK14955 DNA polymerase III su 78.6 2.5 5.5E-05 52.2 5.1 56 118-175 8-64 (397)
423 TIGR00634 recN DNA repair prot 78.5 2.2E+02 0.0047 37.1 23.6 16 985-1000 301-316 (563)
424 cd04508 TUDOR Tudor domains ar 78.5 4.3 9.3E-05 33.6 4.9 43 10-52 1-46 (48)
425 PLN02796 D-glycerate 3-kinase 78.5 1.4 3.1E-05 52.5 2.8 24 151-174 102-125 (347)
426 cd03296 ABC_CysA_sulfate_impor 78.5 1.5 3.2E-05 50.1 2.9 27 147-173 26-52 (239)
427 smart00743 Agenet Tudor-like d 78.4 6.7 0.00014 34.4 6.4 51 6-56 2-57 (61)
428 PRK11022 dppD dipeptide transp 78.4 1.4 3.1E-05 52.8 2.8 27 147-173 31-57 (326)
429 TIGR03574 selen_PSTK L-seryl-t 78.3 1.5 3.3E-05 50.4 2.9 24 152-175 2-25 (249)
430 PF09789 DUF2353: Uncharacteri 78.2 1.6E+02 0.0034 35.1 21.5 29 1027-1055 196-224 (319)
431 PF10205 KLRAQ: Predicted coil 78.1 38 0.00082 33.1 11.5 70 992-1061 5-74 (102)
432 PRK05428 HPr kinase/phosphoryl 78.1 1.5 3.3E-05 51.3 2.8 24 149-172 146-169 (308)
433 smart00072 GuKc Guanylate kina 78.1 1.5 3.2E-05 48.0 2.6 23 151-173 4-26 (184)
434 TIGR02880 cbbX_cfxQ probable R 78.0 1.7 3.6E-05 51.2 3.1 28 151-178 60-87 (284)
435 cd03235 ABC_Metallic_Cations A 78.0 1.5 3.2E-05 49.1 2.6 27 147-173 23-49 (213)
436 PF01695 IstB_IS21: IstB-like 78.0 1.9 4.2E-05 46.9 3.4 30 147-176 45-74 (178)
437 PRK03839 putative kinase; Prov 78.0 1.6 3.5E-05 47.4 2.8 23 151-173 2-24 (180)
438 PRK14959 DNA polymerase III su 78.0 2.1 4.5E-05 55.1 4.1 56 116-175 6-64 (624)
439 PRK14531 adenylate kinase; Pro 77.9 1.8 3.9E-05 47.3 3.2 25 150-174 3-27 (183)
440 PRK00023 cmk cytidylate kinase 77.9 1.6 3.5E-05 49.4 2.9 26 149-174 4-29 (225)
441 cd03292 ABC_FtsE_transporter F 77.8 1.6 3.5E-05 48.8 2.8 27 147-173 25-51 (214)
442 KOG0243 Kinesin-like protein [ 77.8 1.8E+02 0.0038 39.7 21.3 20 306-325 99-118 (1041)
443 PRK14957 DNA polymerase III su 77.7 3 6.5E-05 53.2 5.4 55 117-175 7-64 (546)
444 TIGR03752 conj_TIGR03752 integ 77.6 19 0.00041 44.4 11.8 78 984-1061 58-136 (472)
445 PRK11176 lipid transporter ATP 77.6 1.4 3E-05 57.4 2.6 28 147-174 367-394 (582)
446 PF06637 PV-1: PV-1 protein (P 77.6 1.6E+02 0.0036 35.1 28.1 27 1037-1063 352-378 (442)
447 KOG4593 Mitotic checkpoint pro 77.6 2.3E+02 0.005 36.8 34.8 31 1032-1062 280-313 (716)
448 cd03258 ABC_MetN_methionine_tr 77.6 1.6 3.6E-05 49.5 2.9 27 147-173 29-55 (233)
449 cd03223 ABCD_peroxisomal_ALDP 77.4 1.7 3.8E-05 46.6 2.9 27 147-173 25-51 (166)
450 PHA02530 pseT polynucleotide k 77.4 1.6 3.4E-05 51.7 2.7 24 150-173 3-26 (300)
451 PRK10436 hypothetical protein; 77.3 1.6 3.5E-05 54.6 2.9 35 139-174 209-243 (462)
452 PRK11124 artP arginine transpo 77.3 1.7 3.7E-05 49.7 2.9 26 147-172 26-51 (242)
453 PF08826 DMPK_coil: DMPK coile 77.2 34 0.00073 30.3 10.0 30 1023-1052 28-57 (61)
454 PF01580 FtsK_SpoIIIE: FtsK/Sp 77.2 1.7 3.7E-05 48.3 2.9 26 151-176 40-65 (205)
455 cd03256 ABC_PhnC_transporter A 77.2 1.7 3.7E-05 49.6 2.9 27 147-173 25-51 (241)
456 PF14532 Sigma54_activ_2: Sigm 77.1 1 2.2E-05 46.7 1.0 26 147-172 19-44 (138)
457 PRK14962 DNA polymerase III su 77.1 3.2 7E-05 52.2 5.5 53 118-174 6-61 (472)
458 PRK06835 DNA replication prote 77.1 3.8 8.3E-05 49.1 5.8 29 148-176 182-210 (329)
459 PF13479 AAA_24: AAA domain 77.1 1.5 3.3E-05 49.2 2.4 22 148-169 2-23 (213)
460 cd03224 ABC_TM1139_LivF_branch 77.1 1.8 3.8E-05 48.7 2.9 26 147-172 24-49 (222)
461 TIGR03864 PQQ_ABC_ATP ABC tran 77.0 1.7 3.8E-05 49.4 2.9 27 147-173 25-51 (236)
462 cd03297 ABC_ModC_molybdenum_tr 77.0 1.7 3.8E-05 48.6 2.8 26 147-173 22-47 (214)
463 TIGR02315 ABC_phnC phosphonate 76.8 1.8 3.8E-05 49.5 2.9 27 147-173 26-52 (243)
464 PRK06620 hypothetical protein; 76.8 2.8 6.1E-05 47.1 4.4 20 150-169 45-64 (214)
465 cd03268 ABC_BcrA_bacitracin_re 76.8 1.8 4E-05 48.1 2.9 26 147-172 24-49 (208)
466 cd03266 ABC_NatA_sodium_export 76.7 1.8 3.9E-05 48.5 2.9 25 147-171 29-53 (218)
467 PRK14969 DNA polymerase III su 76.7 3.2 7E-05 53.1 5.4 55 117-175 7-64 (527)
468 PF14197 Cep57_CLD_2: Centroso 76.6 34 0.00074 31.1 10.3 63 997-1059 3-65 (69)
469 PRK13341 recombination factor 76.5 2.9 6.2E-05 55.3 5.0 36 138-173 41-76 (725)
470 PRK06921 hypothetical protein; 76.5 1.9 4.1E-05 50.1 3.1 28 148-175 116-143 (266)
471 PRK02496 adk adenylate kinase; 76.5 1.9 4.1E-05 47.0 2.9 23 152-174 4-26 (184)
472 TIGR01184 ntrCD nitrate transp 76.5 1.8 4E-05 49.1 2.9 27 147-173 9-35 (230)
473 PRK13539 cytochrome c biogenes 76.5 1.9 4.1E-05 48.1 2.9 26 147-172 26-51 (207)
474 PF13173 AAA_14: AAA domain 76.4 2.2 4.8E-05 43.6 3.2 26 149-174 2-27 (128)
475 TIGR00679 hpr-ser Hpr(Ser) kin 76.4 1.9 4.2E-05 50.4 3.0 25 148-172 145-169 (304)
476 cd03230 ABC_DR_subfamily_A Thi 76.3 1.9 4.2E-05 46.5 2.9 26 147-172 24-49 (173)
477 PF08172 CASP_C: CASP C termin 76.3 20 0.00044 41.0 11.1 40 1023-1062 89-128 (248)
478 cd03265 ABC_DrrA DrrA is the A 76.2 1.9 4.2E-05 48.5 2.9 24 148-171 25-48 (220)
479 PRK14963 DNA polymerase III su 76.2 2.1 4.7E-05 54.2 3.6 31 146-176 33-63 (504)
480 cd03269 ABC_putative_ATPase Th 76.2 1.9 4.2E-05 48.0 2.9 25 148-172 25-49 (210)
481 PF13604 AAA_30: AAA domain; P 76.0 3.3 7.1E-05 45.9 4.6 38 138-176 8-45 (196)
482 cd03226 ABC_cobalt_CbiO_domain 76.0 1.9 4.1E-05 47.9 2.8 24 147-170 24-47 (205)
483 TIGR00972 3a0107s01c2 phosphat 76.0 1.9 4.1E-05 49.5 2.9 24 147-170 25-48 (247)
484 TIGR00152 dephospho-CoA kinase 76.0 2.8 6.1E-05 45.9 4.1 47 152-202 2-53 (188)
485 cd03219 ABC_Mj1267_LivG_branch 76.0 1.8 3.9E-05 49.2 2.7 24 147-170 24-47 (236)
486 PRK10908 cell division protein 76.0 2 4.2E-05 48.5 2.9 24 147-170 26-49 (222)
487 cd01672 TMPK Thymidine monopho 76.0 2.2 4.8E-05 46.7 3.3 26 152-177 3-28 (200)
488 TIGR00157 ribosome small subun 76.0 5.9 0.00013 45.5 6.8 140 7-170 1-141 (245)
489 PRK04195 replication factor C 75.9 2.1 4.5E-05 54.3 3.4 57 117-173 5-63 (482)
490 TIGR00017 cmk cytidylate kinas 75.9 2.1 4.5E-05 48.2 3.0 23 151-173 4-26 (217)
491 PF06414 Zeta_toxin: Zeta toxi 75.9 2.2 4.9E-05 47.2 3.3 28 146-173 12-39 (199)
492 PRK06820 type III secretion sy 75.8 3.2 6.9E-05 51.4 4.8 125 6-172 47-186 (440)
493 PRK10584 putative ABC transpor 75.8 2 4.3E-05 48.6 2.9 24 147-170 34-57 (228)
494 TIGR03410 urea_trans_UrtE urea 75.8 1.9 4.2E-05 48.8 2.8 24 147-170 24-47 (230)
495 TIGR01978 sufC FeS assembly AT 75.8 2 4.2E-05 49.1 2.9 24 147-170 24-47 (243)
496 PRK11281 hypothetical protein; 75.8 3.5E+02 0.0076 38.0 26.7 202 874-1075 72-340 (1113)
497 PRK03731 aroL shikimate kinase 75.7 2.2 4.7E-05 45.9 3.1 24 150-173 3-26 (171)
498 PRK06526 transposase; Provisio 75.7 2.3 5E-05 49.0 3.4 30 148-177 97-126 (254)
499 PRK14970 DNA polymerase III su 75.7 4.3 9.4E-05 49.5 6.0 57 116-173 7-63 (367)
500 KOG0804 Cytoplasmic Zn-finger 75.7 1.6E+02 0.0034 36.2 18.1 130 884-1027 327-456 (493)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-235 Score=2174.91 Aligned_cols=1352 Identities=35% Similarity=0.529 Sum_probs=1046.6
Q ss_pred cccccCCEEEEeCCCCCeEeEEEEEEc--CCeEEEE--eCCCcEEEEecCCCCCCCCC-CCCCCCcccccCcCCChHHHH
Q 000442 5 VGLVVGSIVWTEDPEEAWIDGEVEEVN--DEDIKIA--CTSGKTVVAKASNVYPKDPE-FPQCGVDDMTKLAYLHEPGVL 79 (1507)
Q Consensus 5 ~~~~~g~~vw~~~~~~~~~~~~v~~~~--~~~~~v~--~~~g~~~~~~~~~~~~~~~~-~~~~~~~Dl~~L~~l~e~~vl 79 (1507)
..+.+|..||+|+.+.+|+.|.|.+.+ ++.++.. ..+|....++...+...... +...++||||.|+|||||+||
T Consensus 4 ~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl 83 (1463)
T COG5022 4 TNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVL 83 (1463)
T ss_pred cccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHH
Confidence 368999999999999999999999853 3333322 24554444443332211111 135789999999999999999
Q ss_pred HHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCC
Q 000442 80 QNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESG 159 (1507)
Q Consensus 80 ~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSG 159 (1507)
|||++||..++||||+|.||||||||..+| ||+.++|+.|++++..+++|||||||++||+.|...++|||||||||||
T Consensus 84 ~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESG 162 (1463)
T COG5022 84 HNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESG 162 (1463)
T ss_pred HHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEEcCCCceeeeeeeeecc
Q 000442 160 AGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDERGRISGAAIRTYLL 239 (1507)
Q Consensus 160 aGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLL 239 (1507)
|||||+||+||+|||.+++.++....+||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+||||
T Consensus 163 AGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLL 242 (1463)
T COG5022 163 AGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLL 242 (1463)
T ss_pred CCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhh
Confidence 99999999999999999987766667899999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeccCCCCCcceeeeccccC-ChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHHHHhhhhhcccChhhHHH
Q 000442 240 ERSRVCQVSDPERNYHCFYMLCAG-PAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVKTRKAMEVVGINSDEQDA 318 (1507)
Q Consensus 240 EksRv~~~~~~ErnfHiFYql~~~-~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1507)
||||||+|+.+|||||||||||++ ++..++.+++..|.+|+||++|+|..++|+||+++|..|+.||+++||+.++|..
T Consensus 243 EKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~ 322 (1463)
T COG5022 243 EKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQ 322 (1463)
T ss_pred hhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHH
Confidence 999999999999999999999995 4445566667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecCCeeeecCCHHHHHHhHH
Q 000442 319 IFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRDESITKWLDPAAAALNRD 398 (1507)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rd 398 (1507)
||++||||||||||+|..+.+ +.+...+.. .++.+|.|||||++.|.+||+.|.|.+++|.|.+|+|..||..+||
T Consensus 323 IF~iLAaILhiGNIef~~~r~-g~a~~~~~~---~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ird 398 (1463)
T COG5022 323 IFKILAAILHIGNIEFKEDRN-GAAIFSDNS---VLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRD 398 (1463)
T ss_pred HHHHHHHHHhhcceeeeeccc-chhhcCCch---HHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHH
Confidence 999999999999999988654 444444433 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHHHHHHHHhhhhHHHhhhcC
Q 000442 399 ALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTREE 478 (1507)
Q Consensus 399 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~f~~~~f~~eq~~y~~Eg 478 (1507)
||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+||
T Consensus 399 slAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~ 478 (1463)
T COG5022 399 SLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEG 478 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccChHHHHHHHhh-CCCcccccccccccCCCCChHHHHHHHHHHhc--CCCCccCCCCCCCCeEEEeecccee
Q 000442 479 IDWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPRSTHETFAQKLYQTFK--DHKRFSKPKLSLTDFTICHYAGDVT 555 (1507)
Q Consensus 479 i~w~~i~~~dn~~~idli~~-~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~ 555 (1507)
|+|++|+|.|||+||||||+ .|.|||++|||||.+|.|||++|.+||++.+. +++.|.+||+....|+|+||||+|+
T Consensus 479 IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVe 558 (1463)
T COG5022 479 IEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVE 558 (1463)
T ss_pred CcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccce
Confidence 99999999999999999998 25599999999999999999999999999886 5688999999999999999999999
Q ss_pred eeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCC
Q 000442 556 YQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNN 635 (1507)
Q Consensus 556 Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~ 635 (1507)
|+++||++||+|++++++++|+.+|+|+|+..||+.... ..++++++|+|+.||.||++||++|++|+||||||||||.
T Consensus 559 Y~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~ 637 (1463)
T COG5022 559 YDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNE 637 (1463)
T ss_pred eeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCc
Confidence 999999999999999999999999999999999995433 3344688999999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccC-----CCcchHHHHHHHhhhcCCC--
Q 000442 636 VLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFD-----GSCDEVTACKRLLQKVNLK-- 708 (1507)
Q Consensus 636 ~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~-----~~~d~~~~~~~il~~~~~~-- 708 (1507)
.|.|+.||+.+|++|||||||||+|||+|+|||+||+|++|+.||++|.|.... +..|.+.+|+.||....++
T Consensus 638 ~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~ 717 (1463)
T COG5022 638 EKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSS 717 (1463)
T ss_pred ccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChh
Confidence 999999999999999999999999999999999999999999999999997432 2246799999999987665
Q ss_pred cceeccceeecccchhhhcccccccccchhhHHHHhhhhcccccccccchhhhhHHHhhhhccccccceechhhhhhHHH
Q 000442 709 GYQIGKTKVFLRAGQMAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLLRCAAIQIQTLCRGQNGRYQYERMRREAASV 788 (1507)
Q Consensus 709 ~~qiGkTKVFlr~~~~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~~~aai~IQ~~~Rg~laR~~~~~lr~~~aai 788 (1507)
.||+|+||||||+|+++.||.+|...+..+++.||++|||++.|++|....+.+..+|...+|++.|++...--.-.+++
T Consensus 718 ~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1463)
T COG5022 718 KYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFI 797 (1463)
T ss_pred heeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998776655566999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Q 000442 789 KIQKYSRMCLARKDYHKLRSSAISIQ-TGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQCAWRG 867 (1507)
Q Consensus 789 ~IQ~~~R~~~~Rr~~~~lr~a~i~iQ-s~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~~~R~ 867 (1507)
.+|..||....|+.|...-..++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+.+|+.+|.
T Consensus 798 ~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~ 877 (1463)
T COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV 877 (1463)
T ss_pred HhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999 77777777776777777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 868 KVARGELRKLKMAAKETGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKE 947 (1507)
Q Consensus 868 ~~aRr~~~~Lk~ea~~~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e 947 (1507)
..|++++..++.+.+++..+......++.++.++...+..... .+.+-. ....++++..+...+ +++... .+
T Consensus 878 ~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~--~~~~~k-~e~~a~lk~~l~~~d--~~~~~~---~~ 949 (1463)
T COG5022 878 ELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI--ENLEFK-TELIARLKKLLNNID--LEEGPS---IE 949 (1463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh--hhhHHH-HHHHHHHHHHhhccc--ccchhH---HH
Confidence 9999999999999999999999999999999888887664221 111111 122222222222210 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 948 REAAKKTTEALLIMEREAAEKEAVQVPVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLK 1027 (1507)
Q Consensus 948 ~~~~~~~~e~~~~le~e~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~ 1027 (1507)
..... .+.++......++....+.+..+...+....+.....++
T Consensus 950 ~~~~~---------------------------------~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~e--- 993 (1463)
T COG5022 950 YVKLP---------------------------------ELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSE--- 993 (1463)
T ss_pred HHhhH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHH---
Confidence 00000 111111122221111111111111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhhccc-CchhhhhhhhcCCCC--CCCc--chhcccCCchhhH
Q 000442 1028 EALEAESKIIELKTCMQRLEEKLSDIETE---DQILRHQALFN-SSSRKMSEQLSMKTP--EPQS--ATAAKSFGTEADS 1099 (1507)
Q Consensus 1028 ~l~~lE~e~~~L~~~~~~Le~~l~~LE~E---~~~Lk~qal~~-s~~~~l~~~~~~~l~--e~~~--~~~~~~~~~~~~~ 1099 (1507)
+....+++.....+...+++..+.+++. +..+....-.. +.. ...+...| +... ..+.. ....
T Consensus 994 -l~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~~----~l~~ 1064 (1463)
T COG5022 994 -LKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSES----TELSILKPLQKLKGLLLLENN----QLQA 1064 (1463)
T ss_pred -HHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccch----hhhhccCcccchhhhhhHHHH----Hhhh
Confidence 1111111111111111122222222211 11111110000 000 00000000 0000 00000 0000
Q ss_pred HHHH-----------hhHHHhhhhHHHHHHhhc-cCcCc-cCCCCchHHHH-HHHHHhccc-cchhhHHHHHHHHHHHHH
Q 000442 1100 QLRK-----------SQIERQHENLDALLKCVS-QDLGF-SQEKPVAAFTI-YKCLLHWGS-FEAEKTSVFDRLIQLIGS 1164 (1507)
Q Consensus 1100 ~~~~-----------~l~~~~~e~~~~L~~~l~-~~~~~-~~~~p~~A~il-f~clr~~~~-~~~~~~~ll~~i~~~I~~ 1164 (1507)
+... ....+..+....+++.+. .++.. ...-+.||..+ +...-+|.. ...+...++...+..++.
T Consensus 1065 ~~~~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~ 1144 (1463)
T COG5022 1065 RYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEP 1144 (1463)
T ss_pred hHhhhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccc
Confidence 0000 011122344445555443 22222 12223354444 333345654 444445666666666666
Q ss_pred hhcCC--CCC-ccchhhHHhHHHHHH---HHHhhhhccCCCCCCCCCCCCCCcccccccccccCCccchhhHHHHHHHhh
Q 000442 1165 AIENP--DSN-DHLAYWLSNASTLLF---LLQCSLKASGAAGSSQRKPPQPTSFFGRMTQGFRSSSASLSVDVVRQVEAK 1238 (1507)
Q Consensus 1165 ~i~~~--~d~-~~lafWLSN~~~Ll~---~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1238 (1507)
+...- ++. ....||.+|...+++ |.-.. +....... + .+ +....+.. .|.
T Consensus 1145 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------~---~d-~~~~~s~s---~v~-- 1200 (1463)
T COG5022 1145 VFQKLSVLQLELDGLFWEANLEALPSPPPFAALS---------EKRLYQSA------L---YD-EKSKLSSS---EVN-- 1200 (1463)
T ss_pred hhccccchhccccccccccccccCCCCCchhhcc---------hhhhhHhh------h---hc-ccccccHH---HHH--
Confidence 54433 233 347899999988763 11000 00000000 0 00 00001111 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhcCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 000442 1239 YPALLFKQQLTAYVETFYGIIRDNLKKDLSPHLSSCIQAPRMSKG--NAIKSPASSRGSSPKSSPWNSIIDIVNGLLRSL 1316 (1507)
Q Consensus 1239 ~p~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~L~~~l~~L 1316 (1507)
..+..+..+..++|..|.... .+.+++...+ .|..... .+...+...+ ..+...+.++++.+++.+..++
T Consensus 1201 ----~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~n~i~~~~ 1272 (1463)
T COG5022 1201 ----DLKNELIALFSKIFSGWPRGD--KLKKLISEGW-VPTEYSTSLKGFNNLNKKF-DTPASMSNEKLLSLLNSIDNLL 1272 (1463)
T ss_pred ----HHHHHHHHHHHhccccchhhh--hhhhhhhhcc-chhhhccccccccchhhcc-cCcccCcHHHHHHHHHHHHHHH
Confidence 344457778888888887654 2333332111 0100000 0000001111 2345667889999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCccccchhhHHHhchHHHHHHHhhccccccCChHHHhHHHHHHHHHH
Q 000442 1317 KENFVPRVLIQRIFTQIFSYINVQLFNSLLLRRECCTFSNGEYVKQGLAELELWCGEAKEEYAGSSWDELKHTRQAVGFL 1396 (1507)
Q Consensus 1317 ~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lL 1396 (1507)
+.+.+.+.+....++++.-++++.+||.|..+..-..|+.|-++.+|.+.+.+||+.++ ..++..+|+++.|++..+
T Consensus 1273 ~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~ 1349 (1463)
T COG5022 1273 SSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELEELIQAVKVL 1349 (1463)
T ss_pred HHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 456668999999999999
Q ss_pred hccCCCccCHHHHHhccCCCCCHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHhhhc
Q 000442 1397 VIHQKTRISYDEITNDLCPVLSVQQLYRVCTLYWDDDYNTQSVSPDVISSMKILMT 1452 (1507)
Q Consensus 1397 q~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~ 1452 (1507)
|+.+++..+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++.++|.+...
T Consensus 1350 ~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1350 QLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred hhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 9988777777777 5999999999999999999999998 5999999977655444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.6e-202 Score=1902.64 Aligned_cols=766 Identities=35% Similarity=0.563 Sum_probs=703.0
Q ss_pred cccccCCEEEE-------eCCCCCeEeEEEE-EEcCCeEEEEe---CCCcEEEEecCCCCCCCCCCCCCCCcccccCcCC
Q 000442 5 VGLVVGSIVWT-------EDPEEAWIDGEVE-EVNDEDIKIAC---TSGKTVVAKASNVYPKDPEFPQCGVDDMTKLAYL 73 (1507)
Q Consensus 5 ~~~~~g~~vw~-------~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l 73 (1507)
..+.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+|+.++.+++||+.|+||
T Consensus 28 ~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~l 107 (821)
T PTZ00014 28 GNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHT 107 (821)
T ss_pred cccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCC
Confidence 45779999998 6789999999999 77888888874 5789999999999999987767899999999999
Q ss_pred ChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcC-CCCCCCCChhHhhHHHHHHHHhcCCceEE
Q 000442 74 HEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGA-SLGELSPHPFAIADSAYRLMINEGMSQSI 152 (1507)
Q Consensus 74 ~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~-~~~~l~PHifavA~~Ay~~m~~~~~~QsI 152 (1507)
|||+|||||+.||..+.||||+|++|||||||+.+| +|++++++.|+++ ..+++||||||||+.||+.|...++||||
T Consensus 108 nE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsI 186 (821)
T PTZ00014 108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTI 186 (821)
T ss_pred CHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceE
Confidence 999999999999999999999999999999999997 9999999999985 57899999999999999999999999999
Q ss_pred EEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEEcCCCceeee
Q 000442 153 LVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDERGRISGA 232 (1507)
Q Consensus 153 iisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga 232 (1507)
||||||||||||+||++|+|||.+++.. ...+|+++|++|||||||||||||+|||||||||||++|+||.+|.|+||
T Consensus 187 iiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga 264 (821)
T PTZ00014 187 IVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYG 264 (821)
T ss_pred EEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeE
Confidence 9999999999999999999999886532 23579999999999999999999999999999999999999999999999
Q ss_pred eeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHHHHhhhhhccc
Q 000442 233 AIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVKTRKAMEVVGI 311 (1507)
Q Consensus 233 ~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~ 311 (1507)
+|.||||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|..++|+||+++|.+|+.||++|||
T Consensus 265 ~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~ 343 (821)
T PTZ00014 265 SIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGL 343 (821)
T ss_pred EEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999 7888999999999999999995 58899999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCeeeecCCC---CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecCCeeeecC
Q 000442 312 NSDEQDAIFRVVAAILHLGNVEFAKGEE---ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRDESITKWL 388 (1507)
Q Consensus 312 ~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~e~~~~~l 388 (1507)
+++++.+||+|||||||||||+|.+.+. .|++.+.+. +...++.||+|||||+++|.++||+|++.++++.+++++
T Consensus 344 s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~ 422 (821)
T PTZ00014 344 SESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPW 422 (821)
T ss_pred CHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCC
Confidence 9999999999999999999999986432 345555442 345799999999999999999999999999999999999
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHHHHHHHHhh
Q 000442 389 DPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFK 468 (1507)
Q Consensus 389 ~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~f~~~~f~ 468 (1507)
+++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||+
T Consensus 423 ~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~ 502 (821)
T PTZ00014 423 SKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFE 502 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987677789999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCCCC-CCCCeEE
Q 000442 469 MEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKL-SLTDFTI 547 (1507)
Q Consensus 469 ~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~~-~~~~F~i 547 (1507)
.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|++|.+|+. ....|+|
T Consensus 503 ~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I 582 (821)
T PTZ00014 503 RESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVI 582 (821)
T ss_pred HHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4679999
Q ss_pred EeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHcCCCCeE
Q 000442 548 CHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQALLETLSATEPHY 627 (1507)
Q Consensus 548 ~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hf 627 (1507)
+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+|||
T Consensus 583 ~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phf 662 (821)
T PTZ00014 583 KHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPHF 662 (821)
T ss_pred EEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeE
Confidence 99999999999999999999999999999999999999999986543333444668999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCC-CcchHHHHHHHhhhcC
Q 000442 628 IRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDG-SCDEVTACKRLLQKVN 706 (1507)
Q Consensus 628 IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~-~~d~~~~~~~il~~~~ 706 (1507)
|||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+..... ..|+++.|+.||..++
T Consensus 663 IRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~ 742 (821)
T PTZ00014 663 IRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSG 742 (821)
T ss_pred EEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999998875443 3589999999999987
Q ss_pred C--Ccceeccceeecccchhhhcccccccccc---hhhHHHHhhhhcccccccccchhhhhHHHhhhhcccccc
Q 000442 707 L--KGYQIGKTKVFLRAGQMAELDSRRTQVLG---QSAIIIQSKVRSYFAHKRFNLLRCAAIQIQTLCRGQNGR 775 (1507)
Q Consensus 707 ~--~~~qiGkTKVFlr~~~~~~Le~~r~~~l~---~aai~IQ~~~R~~l~Rk~~~~~~~aai~IQ~~~Rg~laR 775 (1507)
+ ++|++|+||||||++++..||..|.+++. ..+..||++||+|++|++|.+++.+++.||+.+|||+++
T Consensus 743 l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 743 LPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred CCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 58999999999999999999998877654 455666666666666666665555555555555554443
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=9.8e-188 Score=1753.02 Aligned_cols=674 Identities=83% Similarity=1.292 Sum_probs=648.8
Q ss_pred CCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHH
Q 000442 62 CGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYR 141 (1507)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~ 141 (1507)
.|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+++|+||+++.++.|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEE
Q 000442 142 LMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVEL 221 (1507)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l 221 (1507)
+|.+.++||||||||||||||||++|++|+|||.+++.+.....+|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555567899999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeeeeecccCcceeccCCCCCcceeeeccccCChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 222 QFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAGPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
+||.+|.|+||+|.+||||||||+.|++||||||||||||++++++++.|+|.++.+|+||++++|..++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecC
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRD 381 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~ 381 (1507)
|+.||+.|||+++++.+||+|||||||||||+|...++.|++.+.+..+...++.||.||||++++|.++||++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999988765677777665556789999999999999999999999999999
Q ss_pred CeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHHH
Q 000442 382 ESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 461 (1507)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~ 461 (1507)
|.+++++++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||||||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCCCCC
Q 000442 462 FNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLS 541 (1507)
Q Consensus 462 f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~~~ 541 (1507)
||+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHc
Q 000442 542 LTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQALLETLS 621 (1507)
Q Consensus 542 ~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~ 621 (1507)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+++++++.||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987655555556789999999999999999999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCCCcchHHHHHHH
Q 000442 622 ATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDGSCDEVTACKRL 701 (1507)
Q Consensus 622 ~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~d~~~~~~~i 701 (1507)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776667889999999
Q ss_pred hhhcCCCcceeccceeecccchhhhccccccccc
Q 000442 702 LQKVNLKGYQIGKTKVFLRAGQMAELDSRRTQVL 735 (1507)
Q Consensus 702 l~~~~~~~~qiGkTKVFlr~~~~~~Le~~r~~~l 735 (1507)
|..++.++|++|+||||||++++..||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.8e-183 Score=1789.62 Aligned_cols=770 Identities=41% Similarity=0.711 Sum_probs=704.0
Q ss_pred cccccCCEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEE-EecCCCCCCCCCCCCCCCcccccCcCCChHHHHHHHH
Q 000442 5 VGLVVGSIVWTEDPEEAWIDGEVEEVNDEDIKIACTSGKTVV-AKASNVYPKDPEFPQCGVDDMTKLAYLHEPGVLQNLR 83 (1507)
Q Consensus 5 ~~~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~ 83 (1507)
..|....+|||||++++|+.|.|.+..|+.++|.+.+|...+ |+.++++|.+|+. +..++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPk-fdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPK-FDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCC-ccccccHHHhcccChHHHHhhHH
Confidence 578889999999999999999999987777999998877766 9999999999864 56899999999999999999999
Q ss_pred hhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCch
Q 000442 84 CRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKT 163 (1507)
Q Consensus 84 ~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKT 163 (1507)
+||..+.||||+|.+||+||||+++| ||++++++.|+|+...+|||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCcCccc---cCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEEcCCCceeeeeeeeeccc
Q 000442 164 ESTKMLMQYLAYMGGRTATE---KQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDERGRISGAAIRTYLLE 240 (1507)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLE 240 (1507)
|+||.||+|||.+++++... +.+++++|+++||||||||||+|++|+|||||||||.|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccCCCCCcceeeecccc-CChhhHhhcCCCC-CCccccccCCCccccCCCChHHHHHHHHhhhhhcccChhhHHH
Q 000442 241 RSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGN-PRMFHYLNQSNFYELDGVDESKEYVKTRKAMEVVGINSDEQDA 318 (1507)
Q Consensus 241 ksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1507)
||||++|+++|||||||||+++ .++..+..|.|.+ +.+|.|+.++.. .++|+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7788899999975 899999999887 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecCCeeeecCCHHHHHHhHH
Q 000442 319 IFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRDESITKWLDPAAAALNRD 398 (1507)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rd 398 (1507)
||+|+||||||||+.|......+.+.+.+.. ..+.+|.||||+...|.++++++.+.++++-+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~~---~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNTE---VADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCch---HHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 9999999999999999986555555555443 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHHHHHHHHhhhhHHHhhhcC
Q 000442 399 ALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTREE 478 (1507)
Q Consensus 399 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~f~~~~f~~eq~~y~~Eg 478 (1507)
+|||++|+|+|.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999999877788999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc-cChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHh-cCCCCccCCC--CCCCCeEEEeeccce
Q 000442 479 IDWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTF-KDHKRFSKPK--LSLTDFTICHYAGDV 554 (1507)
Q Consensus 479 i~w~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~H~ag~V 554 (1507)
|.|.+|+| .|-|||||||+++ .||+++|||||++|++||.+|++||...| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEkp-~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEKP-MGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhch-hhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 6899999999975 59999999999999999999999999999 8999999997 456899999999999
Q ss_pred eeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcc-----------cccCCCCCcchhHHHHHHHHHHHHHHcCC
Q 000442 555 TYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTE-----------ESSKSSKFSSIGSRFKQQLQALLETLSAT 623 (1507)
Q Consensus 555 ~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t 623 (1507)
.|+++||++||+|+++..++.+|..|++++|+.||.+... ..+|++.|.||+..++.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987211 23455678999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccC-CCcchHHHHHHHh
Q 000442 624 EPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFD-GSCDEVTACKRLL 702 (1507)
Q Consensus 624 ~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~-~~~d~~~~~~~il 702 (1507)
+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.|.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955554433 3567799999999
Q ss_pred hhcCC--CcceeccceeecccchhhhcccccccccchhhHHHHhhhhcccccccccchhhhhHHHhhhhccccccceech
Q 000442 703 QKVNL--KGYQIGKTKVFLRAGQMAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLLRCAAIQIQTLCRGQNGRYQYER 780 (1507)
Q Consensus 703 ~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~~~aai~IQ~~~Rg~laR~~~~~ 780 (1507)
..+.. .-|++|.||||||+|+++.||.+|...+....+.+|+.+|||++ |+.|.+
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~-----------------------r~~~~k 794 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLA-----------------------RKEFKK 794 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHH
Confidence 98755 36999999999999999999999998877765555554444444 444433
Q ss_pred hh-hhhHHHHHHHHHHHHHHHHhhh
Q 000442 781 MR-REAASVKIQKYSRMCLARKDYH 804 (1507)
Q Consensus 781 lr-~~~aai~IQ~~~R~~~~Rr~~~ 804 (1507)
.. +..|+.+||+++|.|...+.|.
T Consensus 795 r~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 795 RLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCH
Confidence 32 3346667777777776666553
No 5
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.4e-185 Score=1590.92 Aligned_cols=729 Identities=40% Similarity=0.699 Sum_probs=679.2
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
..|++|++-|+.++|++++.||+.||..+.||||+|+|||+||||+.++ ||++++|++|+|..+.+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 4699999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCcc-ccCcHHHHHHhccchhhhcccccccCCCCCCcccceE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTAT-EKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFV 219 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~-~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1507)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865432 2356889999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCC-CCCccccccCCCccccCCCChHH
Q 000442 220 ELQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLG-NPRMFHYLNQSNFYELDGVDESK 297 (1507)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1507)
.|+||-+|..+|++|.+|||||||||.|.+|||||||||||++ +++.....|+|. +|..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999996 89999999998 78899999999
Q ss_pred HHHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceE
Q 000442 298 EYVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVI 377 (1507)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~ 377 (1507)
+|..++.||.++||+++|+++||+|+|||||||||+|.+.+ |++.+.+. ..+..+|+||++.+++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 55555544 37999999999999999999999999
Q ss_pred eecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-----CCCcceEEEeeccccCCCCCCchhHHHhh
Q 000442 378 MTRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQD-----PNSKVLIGVLDIYGFESFKTNSFEQFCIN 452 (1507)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfeQlciN 452 (1507)
.+++|.+.++++++||.++||||||++|+|||+|||.+||.++... ..+...||+|||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999642 23358899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCC-CChHHHHHHHHHHhcC
Q 000442 453 LTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPR-STHETFAQKLYQTFKD 531 (1507)
Q Consensus 453 yanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~-~~d~~~~~kl~~~~~~ 531 (1507)
|+||||||.|++-++|.|||||.+|||+|..|+|.+|..++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred CCCccCCCC-------CCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccC-CCCCc
Q 000442 532 HKRFSKPKL-------SLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSK-SSKFS 603 (1507)
Q Consensus 532 ~~~~~~p~~-------~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~-~~~~~ 603 (1507)
|++|...+. .-.+|.|.||||+|+|++.||++||+|.+..|+..+|.+|++|++++||+.+..+... ..+++
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 999974332 3468999999999999999999999999999999999999999999999976433222 24678
Q ss_pred chhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhh
Q 000442 604 SIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRIL 683 (1507)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L 683 (1507)
|+|++||.|+..||+.|.+.+|+||||||||+.|.|+.||..+|.+|.+|+|+||.+|++++||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCC--CcchHHHHHHHhhhcCCC-cceeccceeecccch-hhhcccccccccchhhHHHHhhhhcccccccccchh
Q 000442 684 APKVFDG--SCDEVTACKRLLQKVNLK-GYQIGKTKVFLRAGQ-MAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLLR 759 (1507)
Q Consensus 684 ~~~~~~~--~~d~~~~~~~il~~~~~~-~~qiGkTKVFlr~~~-~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~~ 759 (1507)
++..|+. ..++++.|..+++..+.. ++.+|+||||+|.+. +..||..|.+.+-..+..||+.||||++|.+|++|+
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988763 346799999999999884 899999999999866 689999999999999999999999999999999999
Q ss_pred hhhHHHhhhhccccccceechhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 000442 760 CAAIQIQTLCRGQNGRYQYERMRREAASVKIQKYSRMCLARKDYHKL 806 (1507)
Q Consensus 760 ~aai~IQ~~~Rg~laR~~~~~lr~~~aai~IQ~~~R~~~~Rr~~~~l 806 (1507)
++++.|+ +||.+. ....+..||+.+||+..++.|.+-
T Consensus 720 a~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCCC
Confidence 9999988 777332 224777899999999999998653
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.8e-183 Score=1725.20 Aligned_cols=664 Identities=50% Similarity=0.849 Sum_probs=626.3
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCc--cccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTA--TEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
|.++++||||||||||||||||++|+||+|||.+++... ....+|+++|++|||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 234689999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHH
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEY 299 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1507)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++|+|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6888999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 300 VKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
..|+.||+.|||+++++.+||+|||||||||||+|.+.++ +.+.+.. +...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322221 224799999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC---CCCcceEEEeeccccCCCCCCchhHHHhhhhhH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQD---PNSKVLIGVLDIYGFESFKTNSFEQFCINLTNE 456 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE 456 (1507)
++|.++++++++||.++||+|||+||++||+|||++||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhc--CCCC
Q 000442 457 KLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFK--DHKR 534 (1507)
Q Consensus 457 klq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~ 534 (1507)
||||+||+|+|+.||++|.+|||+|+.|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.++ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred ccCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccc-----------------c
Q 000442 535 FSKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEES-----------------S 597 (1507)
Q Consensus 535 ~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-----------------~ 597 (1507)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHH
Q 000442 598 KSSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFL 677 (1507)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1507)
...+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCccCCCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 678 SRFRILAPKVFDGSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 678 ~ry~~L~~~~~~~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
.||++|+|.......|+++.|+.||..+.. .+|++|+||||||++++..||++|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998764456889999999999864 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.8e-183 Score=1713.97 Aligned_cols=661 Identities=45% Similarity=0.752 Sum_probs=625.8
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
|.++++||||||||||||||||++|++|+|||.+++. ...|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~----~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGK----HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 9999999999999999999999999999999999764 246999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC--CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE--ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
|+.||+.|||+++++.+||+|||||||||||+|.+.+. .+.+.+.+. ..++.||.|||||+++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 345555543 4799999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCcceEEEeeccccCCCCCCchhHHHhhhhhHHH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQD-PNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKL 458 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEkl 458 (1507)
++|+++++++++||..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000442 459 QQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKP 538 (1507)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p 538 (1507)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccc-cCCCCCcchhHHHHHHHHHH
Q 000442 539 KL-SLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEES-SKSSKFSSIGSRFKQQLQAL 616 (1507)
Q Consensus 539 ~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1507)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ..+.+..||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754221 12336689999999999999
Q ss_pred HHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCC--Ccch
Q 000442 617 LETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDG--SCDE 694 (1507)
Q Consensus 617 ~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~--~~d~ 694 (1507)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886532 3477
Q ss_pred HHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 695 VTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 695 ~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
+..|+.|++.+.. ++|++|+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998755 589999999999999999999876
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1e-182 Score=1718.76 Aligned_cols=666 Identities=44% Similarity=0.765 Sum_probs=626.5
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
..+++||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++||||||||+.||
T Consensus 4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay 82 (693)
T cd01377 4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNAY 82 (693)
T ss_pred ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCc------cccCcHHHHHHhccchhhhcccccccCCCCCCc
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTA------TEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSR 214 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~ie~~il~snpilEaFGNAkT~~N~NSSR 214 (1507)
++|..+++||||||||||||||||++|+||+|||.+++... ....+|+++|++|||||||||||||+|||||||
T Consensus 83 ~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR 162 (693)
T cd01377 83 RSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR 162 (693)
T ss_pred HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence 99999999999999999999999999999999999986532 124579999999999999999999999999999
Q ss_pred ccceEEEEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCC-CccccccCCCccccCC
Q 000442 215 FGKFVELQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNP-RMFHYLNQSNFYELDG 292 (1507)
Q Consensus 215 fgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~-~~~~yl~~~~~~~~~~ 292 (1507)
||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .+++
T Consensus 163 FGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~ 241 (693)
T cd01377 163 FGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPG 241 (693)
T ss_pred cceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCC
Confidence 999999999999999999999999999999999999999999999999 78899999999876 99999999886 4789
Q ss_pred CChHHHHHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhh
Q 000442 293 VDESKEYVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSM 372 (1507)
Q Consensus 293 ~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l 372 (1507)
+||+++|.+|+.||+.|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..+..||.|||||+++|.++|
T Consensus 242 ~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l 318 (693)
T cd01377 242 VDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKAL 318 (693)
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999987654555555544 479999999999999999999
Q ss_pred hcceEeecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhh
Q 000442 373 CKRVIMTRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCIN 452 (1507)
Q Consensus 373 ~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciN 452 (1507)
|++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||
T Consensus 319 ~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 319 LHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred cceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccc-cChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcC
Q 000442 453 LTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKD 531 (1507)
Q Consensus 453 yanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~ 531 (1507)
||||||||+|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.+++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 499999999999999999999999999999999999999999999
Q ss_pred CCCc--cCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccc----------cCC
Q 000442 532 HKRF--SKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEES----------SKS 599 (1507)
Q Consensus 532 ~~~~--~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~----------~~~ 599 (1507)
|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .++
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~ 558 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKG 558 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCcC
Confidence 9887 4455667899999999999999999999999999999999999999999999998642211 122
Q ss_pred CCCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHH
Q 000442 600 SKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSR 679 (1507)
Q Consensus 600 ~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~r 679 (1507)
+++.||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|++|
T Consensus 559 ~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~r 638 (693)
T cd01377 559 GSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQR 638 (693)
T ss_pred CccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCccC-CCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 680 FRILAPKVFD-GSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 680 y~~L~~~~~~-~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
|++|+|...+ ...|.++.|+.||..+++ ++|++|+||||||++++..||.+|
T Consensus 639 Y~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 639 YEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999988642 346889999999998876 489999999999999999999876
No 9
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-182 Score=1675.57 Aligned_cols=752 Identities=61% Similarity=0.972 Sum_probs=718.3
Q ss_pred CCCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHH
Q 000442 60 PQCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSA 139 (1507)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~A 139 (1507)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|.+|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceE
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFV 219 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1507)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999886 34678999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeeccccCChhhHhhcCCCCCCccccccCCCccccCCCChHHHH
Q 000442 220 ELQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAGPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEY 299 (1507)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1507)
+|+||.+|+|+||.|+|||||||||+.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+.+|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995448999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 300 VKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++.+.++ ++..+|.|||++.+.|..||+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998876666655543 789999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQ-DPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKL 458 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEkl 458 (1507)
++++|+++++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 445589999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000442 459 QQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKP 538 (1507)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p 538 (1507)
||+||+|||+.||++|..|||+|+.|+|.||++|+++|++ |.|+++||||+|++|.++|++|..||++.+.+|++|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHHHHHH
Q 000442 539 KLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQALLE 618 (1507)
Q Consensus 539 ~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 618 (1507)
+++.+.|+|.||||+|+|+++|||+||||+|++++.+++..|+++|+..+|++...++.+.++++||+++|+.+|..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666555566889999999999999999
Q ss_pred HHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCCCcchHHHH
Q 000442 619 TLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDGSCDEVTAC 698 (1507)
Q Consensus 619 ~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~d~~~~~ 698 (1507)
+|++|+||||||||||+.+.|+.|++.+|++|||||||||+|||+++|||.|++|.||+.||++|+| . ....|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~-~~~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-N-DSASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-c-hhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 3 3345669999
Q ss_pred HHHhhhcCCCcceeccceeecccchhhhcccccccccchhhHHHHhhhhcccccccccchhhhhHHHhhhhcccccccee
Q 000442 699 KRLLQKVNLKGYQIGKTKVFLRAGQMAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLLRCAAIQIQTLCRGQNGRYQY 778 (1507)
Q Consensus 699 ~~il~~~~~~~~qiGkTKVFlr~~~~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~~~aai~IQ~~~Rg~laR~~~ 778 (1507)
+.+|+.++.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..++++++.||+++||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 000442 779 ERMRREAASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHN 824 (1507)
Q Consensus 779 ~~lr~~~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk 824 (1507)
..+ +..||+.||+.||+|..|++|..++.+++.+|+.+||+.+|.
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334 667889999999999999999888888888888888887776
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2e-181 Score=1696.59 Aligned_cols=656 Identities=48% Similarity=0.802 Sum_probs=615.0
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
..|++||+.|++|||++|||||+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.||
T Consensus 7 ~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay 83 (677)
T cd01383 7 LDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAY 83 (677)
T ss_pred ccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 99999999999764 46999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
+.|..+++||||||||||||||||++|++|+|||.+++. ..++++|++|||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~ 158 (677)
T cd01383 84 NEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIE 158 (677)
T ss_pred HHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEE
Confidence 999999999999999999999999999999999998753 369999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHH
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEY 299 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1507)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 159 l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f 238 (677)
T cd01383 159 IHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRF 238 (677)
T ss_pred EEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHH
Confidence 999999999999999999999999999999999999999999 7888999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 300 VKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
..|+.||+.|||+++++..||+|||||||||||+|.+.++.+.+.+.+ ...+..||.|||||+++|.++||++++.+
T Consensus 239 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 315 (677)
T cd01383 239 HTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHV 315 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEe
Confidence 999999999999999999999999999999999998754433333333 24799999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCcceEEEeeccccCCCCCCchhHHHhhhhhHHH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDP-NSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKL 458 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEkl 458 (1507)
+++.++++++++||..+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 316 ~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkL 395 (677)
T cd01383 316 NNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERL 395 (677)
T ss_pred CCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754 3467999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000442 459 QQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKP 538 (1507)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p 538 (1507)
||+||++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+|
T Consensus 396 Q~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 475 (677)
T cd01383 396 QQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE 475 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCC-----cc------cccCCCCCcchhH
Q 000442 539 KLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPL-----TE------ESSKSSKFSSIGS 607 (1507)
Q Consensus 539 ~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~-----~~------~~~~~~~~~tv~~ 607 (1507)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. .+....+..||++
T Consensus 476 ~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~ 552 (677)
T cd01383 476 R--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGT 552 (677)
T ss_pred C--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHH
Confidence 5 578999999999999999999999999999999999999999876 55421 00 0112235689999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCc
Q 000442 608 RFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKV 687 (1507)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~ 687 (1507)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 553 ~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 632 (677)
T cd01383 553 KFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLEN 632 (677)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 688 FDGSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 688 ~~~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
.. ..|++..|+.||..+++ ++|++|+||||||.++++.||..|
T Consensus 633 ~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 633 IA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 54 35788999999998876 489999999999999999999876
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.2e-181 Score=1702.07 Aligned_cols=662 Identities=46% Similarity=0.777 Sum_probs=627.0
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
|++||+.|++|||++|||+|+.||.++.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
|..+++||||||||||||||||++|++|+|||.+++++. ....++++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986542 2356999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecC
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRD 381 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~ 381 (1507)
|+.||+.|||+++++.+||+|||||||||||+|...++ +.+.+.+. ..++.||.|||||+++|.++||+|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDK---DVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCCh---HHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 23344433 479999999999999999999999999998
Q ss_pred ----CeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCcceEEEeeccccCCCCCCchhHHHhhhhhH
Q 000442 382 ----ESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQD-PNSKVLIGVLDIYGFESFKTNSFEQFCINLTNE 456 (1507)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanE 456 (1507)
|.++++++++||.++||+|||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhh-CCCcccccccccccCC-CCChHHHHHHHHHHhcCCCC
Q 000442 457 KLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-RSTHETFAQKLYQTFKDHKR 534 (1507)
Q Consensus 457 klq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~-~~~Gil~lLdee~~~~-~~~d~~~~~kl~~~~~~~~~ 534 (1507)
||||+||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHH
Q 000442 535 FSKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQ 614 (1507)
Q Consensus 535 ~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1507)
+.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433222 2356899999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccC-CCcc
Q 000442 615 ALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFD-GSCD 693 (1507)
Q Consensus 615 ~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~-~~~d 693 (1507)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|+|.... ...|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987532 3468
Q ss_pred hHHHHHHHhhhcCC--Ccceeccceeecccc-hhhhccccc
Q 000442 694 EVTACKRLLQKVNL--KGYQIGKTKVFLRAG-QMAELDSRR 731 (1507)
Q Consensus 694 ~~~~~~~il~~~~~--~~~qiGkTKVFlr~~-~~~~Le~~r 731 (1507)
+++.|+.||..+++ ++|++|+||||||+| +++.||.+|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999866 489999999999998 688999876
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.2e-179 Score=1537.75 Aligned_cols=782 Identities=40% Similarity=0.677 Sum_probs=704.7
Q ss_pred ccCCEEEEeCCCCCeEeEEEEEEcCCeEEEEe--CCCcEEEEecCCCCCCCCCCCCCCCcccccCcCCChHHHHHHHHhh
Q 000442 8 VVGSIVWTEDPEEAWIDGEVEEVNDEDIKIAC--TSGKTVVAKASNVYPKDPEFPQCGVDDMTKLAYLHEPGVLQNLRCR 85 (1507)
Q Consensus 8 ~~g~~vw~~~~~~~~~~~~v~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R 85 (1507)
.-|..||++|+.++|+.|.|++++.+..+++. ..|.+++.--+++++...+ ++..++|-|.|-||||+++|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45899999999999999999999887788764 4577888778888887544 46789999999999999999999999
Q ss_pred hccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhH
Q 000442 86 YDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTES 165 (1507)
Q Consensus 86 ~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1507)
|..|.||||+.+||||||||..++.+|++++|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEEcCCCceeeeeeeeecccCccee
Q 000442 166 TKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDERGRISGAAIRTYLLERSRVC 245 (1507)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~ 245 (1507)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|.+||||||||+
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999975443 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCc--------------------------cccCCCChHHH
Q 000442 246 QVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNF--------------------------YELDGVDESKE 298 (1507)
Q Consensus 246 ~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1507)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8899999999999999999986411 01123689999
Q ss_pred HHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC--CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcce
Q 000442 299 YVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE--ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRV 376 (1507)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~ 376 (1507)
|..+..||+.+|++++|...||+++|||||||||+|+...+ ..+|.+.+ .+...|..+|+|||+|+++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34566665 3556899999999999999999999999
Q ss_pred Eee-----cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHh
Q 000442 377 IMT-----RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCI 451 (1507)
Q Consensus 377 ~~~-----~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1507)
+.+ +|..|.+||.+.+|..+||||||++|++||||||.+||+++... .+..|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 864 34678999999999999999999999999999999999999654 467899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcC
Q 000442 452 NLTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKD 531 (1507)
Q Consensus 452 NyanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~ 531 (1507)
||+|||||++||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+.+++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCC----------CCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCC--
Q 000442 532 HKRFSKPKLS----------LTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKS-- 599 (1507)
Q Consensus 532 ~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-- 599 (1507)
|-+...|+-+ ...|.|+||||.|.|.+..|+|||.|.+...+..|+..|.+||+.+||++....+.+.
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888777643 3579999999999999999999999999999999999999999999999864433221
Q ss_pred C--CCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHH
Q 000442 600 S--KFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFL 677 (1507)
Q Consensus 600 ~--~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1507)
+ ++-|||++||.||..||+.|++|..|||||||||....|+.||...++.||.|+|+...++++..|||+|..|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 67799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCccCCCcchHHHHHHHhhhcCCC--cceeccceeecccchhhhcccccccccchhhHHHHhhhhcccccccc
Q 000442 678 SRFRILAPKVFDGSCDEVTACKRLLQKVNLK--GYQIGKTKVFLRAGQMAELDSRRTQVLGQSAIIIQSKVRSYFAHKRF 755 (1507)
Q Consensus 678 ~ry~~L~~~~~~~~~d~~~~~~~il~~~~~~--~~qiGkTKVFlr~~~~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~ 755 (1507)
.-|+-.+|+.+. ..|++..|+.+...+|++ +|+||.||||||+|.++..+++....-......| +.+..|+.+.|+
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv-~kVn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELV-AKVNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHH-HHHHHHHHHhHH
Confidence 999998888654 579999999999999885 8999999999999999999887766655554444 456789998888
Q ss_pred cchhhhhHHHhhhhccccccceechhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 000442 756 NLLRCAAIQIQTLCRGQNGRYQYERMRREAASVKIQKYSRMCLARKDYHKL 806 (1507)
Q Consensus 756 ~~~~~aai~IQ~~~Rg~laR~~~~~lr~~~aai~IQ~~~R~~~~Rr~~~~l 806 (1507)
++...++..+-..-- +-+-+..+++++|+++|||++|+++...
T Consensus 793 kk~q~~a~sVIKLkN--------kI~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLKN--------KIIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHhhhhhhheeehhh--------HHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 776655443322100 1122445788899999999999988653
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.8e-180 Score=1691.87 Aligned_cols=662 Identities=41% Similarity=0.670 Sum_probs=621.3
Q ss_pred CCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCC-CCCCCCChhHhhHHHH
Q 000442 62 CGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGAS-LGELSPHPFAIADSAY 140 (1507)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~-~~~l~PHifavA~~Ay 140 (1507)
.++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+++| +|+++.++.|+++. .+++|||||+||+.||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999998 99999999999987 8999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
++|.++++||||||||||||||||++|+||+|||.+++.. ....+|+++|++|||||||||||||++|+||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 9999999999999999999999999999999999997533 234679999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHH
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEY 299 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1507)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7888999999988889999999988877899999999
Q ss_pred HHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC---CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcce
Q 000442 300 VKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE---ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRV 376 (1507)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~ 376 (1507)
..|+.||+.|||+++++..||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999987532 33444444 34799999999999999999999999
Q ss_pred EeecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC---CCcceEEEeeccccCCCCC-CchhHHHhh
Q 000442 377 IMTRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDP---NSKVLIGVLDIYGFESFKT-NSFEQFCIN 452 (1507)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfeQlciN 452 (1507)
+.+++|.+++|++++||..+||+|||+||++||+|||++||.+|.+.. ....+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 999999999999999999999999999999999999999999998643 3468999999999999999 999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCC
Q 000442 453 LTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDH 532 (1507)
Q Consensus 453 yanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~ 532 (1507)
|||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++|+++.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCccccc---------CCCCCc
Q 000442 533 KRFSKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESS---------KSSKFS 603 (1507)
Q Consensus 533 ~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~---------~~~~~~ 603 (1507)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.... ++.+..
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999976432211 122347
Q ss_pred chhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhh
Q 000442 604 SIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRIL 683 (1507)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L 683 (1507)
||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCcchHHHHHHHhhhcCCC--cceeccceeecccchhhhccccc
Q 000442 684 APKVFDGSCDEVTACKRLLQKVNLK--GYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 684 ~~~~~~~~~d~~~~~~~il~~~~~~--~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
+|... ...++.|+.||..++++ +|++|+||||||++++..||...
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 98743 24567799999998764 89999999999999999998754
No 14
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.7e-180 Score=1688.36 Aligned_cols=660 Identities=42% Similarity=0.713 Sum_probs=617.3
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
|...++||||||||||||||||++|++|+|||.+++.+ ...|+++|++|||||||||||||++||||||||||++|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~ 157 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIF 157 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEE
Confidence 99999999999999999999999999999999987532 356999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|..
T Consensus 158 f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (677)
T cd01387 158 LE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRR 236 (677)
T ss_pred ec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHH
Confidence 95 7999999999999999999999999999999999999 788899999999999999999999988999999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC--CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE--ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
|+.||+.|||+++++..||+|||||||||||+|..... .+.+.+.++ ..+..||+|||||+++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 313 (677)
T cd01387 237 LLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSA---REIQAVAELLQISPEGLQKAITFKVTET 313 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCH---HHHHHHHHHhCCCHHHHHHHhccCeEEe
Confidence 99999999999999999999999999999999987532 223334333 4799999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 459 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq 459 (1507)
++|.+.+++++++|.++||+|||+||++||+|||.+||.+|... ....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ 392 (677)
T cd01387 314 RREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQ 392 (677)
T ss_pred CCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999864 45679999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCCC
Q 000442 460 QHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPK 539 (1507)
Q Consensus 460 ~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~ 539 (1507)
|+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+|+|++|++|+...+++|+.|.+|+
T Consensus 393 ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~ 472 (677)
T cd01387 393 YLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPK 472 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCccc---------c--cCCCCCcchhHH
Q 000442 540 LSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEE---------S--SKSSKFSSIGSR 608 (1507)
Q Consensus 540 ~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~---------~--~~~~~~~tv~~~ 608 (1507)
.+.+.|+|+||||+|+|+++||++||+|.++++++++|.+|++++|+.||+..... + .+..+.+||+++
T Consensus 473 ~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~ 552 (677)
T cd01387 473 MPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAK 552 (677)
T ss_pred CCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHH
Confidence 88889999999999999999999999999999999999999999999999753211 0 112245799999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCcc
Q 000442 609 FKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVF 688 (1507)
Q Consensus 609 f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~ 688 (1507)
|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|+|...
T Consensus 553 f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~ 632 (677)
T cd01387 553 FQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKL 632 (677)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 689 DGSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 689 ~~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
....+.+..+..++..+++ +.|++|+||||||++++..||.+|
T Consensus 633 ~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 633 ARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 3332334445778877765 479999999999999999999876
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1e-179 Score=1693.76 Aligned_cols=664 Identities=43% Similarity=0.718 Sum_probs=619.0
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
+.++|||+.|++|||++|||||+.||.++.||||+|+||||||||+.+|++|+++.++.|+++..+++||||||||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
++|.++++||||||||||||||||++|+||+|||.++++ +.+|+++|++|||||||||||||++||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~----~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGS----GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccC----CccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 999999999999999999999999999999999988653 2579999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCC-------------
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSN------------- 286 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~------------- 286 (1507)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999 788899999999999999999753
Q ss_pred -------------ccccCCCChHHHHHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC-CCCCccCCcccHH
Q 000442 287 -------------FYELDGVDESKEYVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE-ADSSEPKDEKSRS 352 (1507)
Q Consensus 287 -------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~~ 352 (1507)
|...+++||+++|.+|+.||+.|||+++++..||+|||||||||||+|.+.++ .+.|.+.+ .+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHH
Confidence 23457899999999999999999999999999999999999999999987433 23343332 3445
Q ss_pred HHHHHHHHcCCCHHHHHHhhhcceEe-----ecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 000442 353 HLKTAAELFMCDEKSLEDSMCKRVIM-----TRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSK 427 (1507)
Q Consensus 353 ~l~~~a~LLgv~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~ 427 (1507)
.+..||.||||++++|.++||+|++. ++++.+.++++++||..+||+|||+||++||+|||.+||.++..+ ...
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCC
Confidence 89999999999999999999999998 678999999999999999999999999999999999999999765 356
Q ss_pred ceEEEeeccccCCCCCCchhHHHhhhhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccc
Q 000442 428 VLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALL 507 (1507)
Q Consensus 428 ~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lL 507 (1507)
.+||||||||||+|+.|||||||||||||||||+|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEeeccceeeeccchhhhccCCCcHHHHHHH
Q 000442 508 DEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLS----------LTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVL 577 (1507)
Q Consensus 508 dee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll 577 (1507)
||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|
T Consensus 477 Dee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll 556 (717)
T cd01382 477 DEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLI 556 (717)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHH
Confidence 9999999999999999999999999988877532 357999999999999999999999999999999999
Q ss_pred HhcCCccccCcCCCCcccc---c--CCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhh
Q 000442 578 SASGCPFVSGLFPPLTEES---S--KSSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLR 652 (1507)
Q Consensus 578 ~~S~~~~i~~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr 652 (1507)
++|++++|+.||+...... . ++.++.||+++||.||+.||++|++|+||||||||||+.++|+.||...|++|||
T Consensus 557 ~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr 636 (717)
T cd01382 557 CESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQ 636 (717)
T ss_pred HhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHH
Confidence 9999999999998643211 1 1225679999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCCCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhcccc
Q 000442 653 CGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDGSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSR 730 (1507)
Q Consensus 653 ~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~ 730 (1507)
|+||||+|||+++|||+|++|.+|++||+.|+|.... ..|++..|+.||..+++ ++|++|+||||||+|+++.||++
T Consensus 637 ~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 637 CSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred hcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999999999999987553 35889999999999876 48999999999999999999975
Q ss_pred c
Q 000442 731 R 731 (1507)
Q Consensus 731 r 731 (1507)
.
T Consensus 716 ~ 716 (717)
T cd01382 716 M 716 (717)
T ss_pred h
Confidence 3
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.9e-177 Score=1654.70 Aligned_cols=639 Identities=38% Similarity=0.695 Sum_probs=602.2
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
++|||+.|++|||++|||||+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 367999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhH-hhcCCCCCCccccccCCCccccCCCC----hH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDI-EKYKLGNPRMFHYLNQSNFYELDGVD----ES 296 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~-~~~~l~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1507)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 554544 78999999999999999887777765 47
Q ss_pred HHHHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCC---CCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhh
Q 000442 297 KEYVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEE---ADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMC 373 (1507)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~ 373 (1507)
++|..|+.||+.|||+++++..||+|||||||||||+|.+.+. .+.+.+.+ ...+..+|+|||||+++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986532 23333433 35799999999999999999999
Q ss_pred cceEeecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCC-----CcceEEEeeccccCCCCCCchhH
Q 000442 374 KRVIMTRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPN-----SKVLIGVLDIYGFESFKTNSFEQ 448 (1507)
Q Consensus 374 ~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 448 (1507)
++++.+++++++++++++||..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986432 35799999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHH
Q 000442 449 FCINLTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQT 528 (1507)
Q Consensus 449 lciNyanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~ 528 (1507)
||||||||||||+|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHH
Q 000442 529 FKDHKRFSKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSR 608 (1507)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~ 608 (1507)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| .||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888889999999999999999999999999999999999987 589999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCcc
Q 000442 609 FKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVF 688 (1507)
Q Consensus 609 f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~ 688 (1507)
||.||+.||++|++|+||||||||||+.|.|+.||+..|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCcchHHHHHHHhhhcCCCcceeccceeecccchhhhccccc
Q 000442 689 DGSCDEVTACKRLLQKVNLKGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 689 ~~~~d~~~~~~~il~~~~~~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
....++++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4456789999999999999999999999999999999999875
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.5e-176 Score=1664.37 Aligned_cols=667 Identities=53% Similarity=0.887 Sum_probs=631.3
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+++| +|+++.++.|+++..+++|||||+||+.||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++|+||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 34679999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHH
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEY 299 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1507)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCC-ccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEe
Q 000442 300 VKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSS-EPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIM 378 (1507)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~ 378 (1507)
.+|+.||+.|||+++++.+||+|||||||||||+|...++.+.. .+. +...++.||.||||++++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999876432221 233 34579999999999999999999999999
Q ss_pred ecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHH
Q 000442 379 TRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKL 458 (1507)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEkl 458 (1507)
+++|.+++++++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998767889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccCC
Q 000442 459 QQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKP 538 (1507)
Q Consensus 459 q~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p 538 (1507)
|++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||.+.+++|+.|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHHHHHHHHHHH
Q 000442 539 K-LSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSRFKQQLQALL 617 (1507)
Q Consensus 539 ~-~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~ 617 (1507)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+..||+++|+.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 566799999999999999999999999999999999999999999999998754433334467899999999999999
Q ss_pred HHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCC-CcchHH
Q 000442 618 ETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDG-SCDEVT 696 (1507)
Q Consensus 618 ~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~-~~d~~~ 696 (1507)
++|++|+||||||||||+.++|+.||...|++||||+||||++||++.|||+|++|.+|+.||++|++..... ..|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875432 346899
Q ss_pred HHHHHhhhcCC--Ccceeccceeecccchhhhcccccc
Q 000442 697 ACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRRT 732 (1507)
Q Consensus 697 ~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r~ 732 (1507)
.|+.||..+++ ++|++|+||||||++++..||++|+
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999864 5899999999999999999999874
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-177 Score=1526.27 Aligned_cols=695 Identities=40% Similarity=0.702 Sum_probs=650.0
Q ss_pred CCCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHH
Q 000442 60 PQCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSA 139 (1507)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~A 139 (1507)
...|||||+.|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|+...+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceE
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFV 219 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1507)
|++|..+.+|||||||||||||||+++|+||+|++.+|+ .+.+...|.+-||+|||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 4455678999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHH
Q 000442 220 ELQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKE 298 (1507)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1507)
||+|+..|..+||+|.+|||||||||.|.+|||||||||||++ |+.+.|..|++..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEe
Q 000442 299 YVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIM 378 (1507)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~ 378 (1507)
|++|+.||+++|+.+++|+.||++||+|||||||.|.+.+ ..+.+.+. ..++-.|.|||||+..|++.||.|.+.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998832 33444443 368999999999999999999999986
Q ss_pred ec----CCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCcceEEEeeccccCCCCCCchhHHHhhh
Q 000442 379 TR----DESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDP-NSKVLIGVLDIYGFESFKTNSFEQFCINL 453 (1507)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1507)
+. .+++.+||+++||.+.||||||+||.+||||||++||.++...+ ....+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 53 58999999999999999999999999999999999999998543 35789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhh-CCCcccccccccccCC----CCChHHHHHHHHHH
Q 000442 454 TNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP----RSTHETFAQKLYQT 528 (1507)
Q Consensus 454 anEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~-~~~Gil~lLdee~~~~----~~~d~~~~~kl~~~ 528 (1507)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|||.|... .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 4679999999999753 46799999999999
Q ss_pred hcCCCCccCCCCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcccccCCCCCcchhHH
Q 000442 529 FKDHKRFSKPKLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESSKSSKFSSIGSR 608 (1507)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~ 608 (1507)
+++|++|..- ...|+|+||||+|+||++||.+||+|.|..|+++|+..|.++|++.||+...... ++.+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhh
Confidence 9999999743 4789999999999999999999999999999999999999999999999865443 34477999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCcc
Q 000442 609 FKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVF 688 (1507)
Q Consensus 609 f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~ 688 (1507)
.+.|.++|.+||..|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|+.||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCcchHHHHHHHhhhcCC--Ccceeccceeecccch-hhhcccccccccchhhHHHHhhhhcccccccccchhhhhHH
Q 000442 689 D-GSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQ-MAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLLRCAAIQ 764 (1507)
Q Consensus 689 ~-~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~-~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~~~aai~ 764 (1507)
+ +..|++.+|+.||+...+ +.||+|.||||++.+- +..||.+|+......|..||++||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 346899999999998755 5899999999999854 78899999999999999999999999999988888765543
Q ss_pred H
Q 000442 765 I 765 (1507)
Q Consensus 765 I 765 (1507)
+
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 3
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.1e-174 Score=1654.10 Aligned_cols=662 Identities=51% Similarity=0.844 Sum_probs=622.3
Q ss_pred CCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHH
Q 000442 63 GVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRL 142 (1507)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~ 142 (1507)
|++||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
|.++++||||||||||||||||++|++|+||+.+++.. ...++++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999997643 356999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999988899999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCC--CccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEee
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADS--SEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMT 379 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~ 379 (1507)
++.||+.|||+++++.+||+|||||||||||+|.+.++.+. +.+. +...++.+|.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987644332 3333 345899999999999999999999999999
Q ss_pred cCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHH
Q 000442 380 RDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 459 (1507)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq 459 (1507)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999987677899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCCccC-C
Q 000442 460 QHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSK-P 538 (1507)
Q Consensus 460 ~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~-p 538 (1507)
|+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.+++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998644 4
Q ss_pred CCCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCccc-----------ccCCCCCcchhH
Q 000442 539 KLSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEE-----------SSKSSKFSSIGS 607 (1507)
Q Consensus 539 ~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1507)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+..||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999863211 112236689999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCc
Q 000442 608 RFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKV 687 (1507)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~ 687 (1507)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||++||+++|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 688 FDGSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 688 ~~~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
..........|+.++..+++ ++|++|+||||||++++..||.+|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 55433444459999998876 489999999999999999999865
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=8e-174 Score=1640.46 Aligned_cols=660 Identities=30% Similarity=0.467 Sum_probs=591.8
Q ss_pred CcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHH
Q 000442 64 VDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLM 143 (1507)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m 143 (1507)
||||+.|++|||++|||||+.||.++.||||+|++|||||||+.+| ||++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEE
Q 000442 144 INEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQF 223 (1507)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f 223 (1507)
..+++||||||||||||||||++|+||+|||.+++..+ .....++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~--~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD--GRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC--cccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 99999999999999999999999999999999876432 1222357999999999999999999999999999999999
Q ss_pred cCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCC-CccccCCCChHHHHHH
Q 000442 224 DERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQS-NFYELDGVDESKEYVK 301 (1507)
Q Consensus 224 ~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~-~~~~~~~~dd~~~f~~ 301 (1507)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.+ .+...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 78889999999876554333332 2334678999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecC
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRD 381 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~ 381 (1507)
|+.||+.|||+++++..||+|||||||||||+|.... +.+.+.+. ..++.+|.||||++++|.++|+++++.++.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~~---~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFARP---EWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCCH---HHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 22333333 479999999999999999999998876553
Q ss_pred C-------------eeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCC-----
Q 000442 382 E-------------SITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKT----- 443 (1507)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1507)
+ .+..++++++|.++||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3445788999999999999999999999999999999998766678999999999999984
Q ss_pred -CchhHHHhhhhhHHHHHHHHHHHhhhhHHHhhhcCCCcccccc-cChHHHHHHHhhCC--------------Ccccccc
Q 000442 444 -NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTREEIDWSYIEF-IDNQDVLDLIEKKP--------------GGIIALL 507 (1507)
Q Consensus 444 -NsfeQlciNyanEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~-~dn~~~idli~~~~--------------~Gil~lL 507 (1507)
|||||||||||||||||+||++||+.||++|.+|||+|+.+.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999987655 79999999999865 5999999
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCccCCC------CCCCCeEEEeeccc--eeeeccchhhhccCCC-cHHHHHHHH
Q 000442 508 DEACMFPRSTHETFAQKLYQTFKDHKRFSKPK------LSLTDFTICHYAGD--VTYQTELFLDKNKDYV-VPEHQAVLS 578 (1507)
Q Consensus 508 dee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~H~ag~--V~Y~~~~fl~kN~d~~-~~~~~~ll~ 578 (1507)
||||++|++||++|++||++.+++|++|.++. .....|+|+||||. |+|+++||++||+|.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999998887622 12468999999995 9999999999999976 689999999
Q ss_pred hcCCccccCcCCCCcc-------------ccc----------C--------CCCCcchhHHHHHHHHHHHHHHcCCCCeE
Q 000442 579 ASGCPFVSGLFPPLTE-------------ESS----------K--------SSKFSSIGSRFKQQLQALLETLSATEPHY 627 (1507)
Q Consensus 579 ~S~~~~i~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~L~~~l~~t~~hf 627 (1507)
+|++++|+.||+.... ..+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999953210 000 0 01345899999999999999999999999
Q ss_pred EEEecCCCCCC----------------------CCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhcc
Q 000442 628 IRCVKPNNVLK----------------------PSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAP 685 (1507)
Q Consensus 628 IrCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~ 685 (1507)
|||||||+.|. |+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999974 78999999999999999999999999999999999999999999988
Q ss_pred CccC------CCcchHHHHHHHhhhcCC--Ccceeccceeecccchhhhccccc
Q 000442 686 KVFD------GSCDEVTACKRLLQKVNL--KGYQIGKTKVFLRAGQMAELDSRR 731 (1507)
Q Consensus 686 ~~~~------~~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr~~~~~~Le~~r 731 (1507)
...+ ...|++++|+.||..+++ ++|++|+||||||++++..||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6432 135889999999999876 489999999999999999999876
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=7.8e-166 Score=1598.28 Aligned_cols=653 Identities=49% Similarity=0.849 Sum_probs=579.7
Q ss_pred CcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHH
Q 000442 64 VDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLM 143 (1507)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m 143 (1507)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| ||++++++.|+++..+++||||||||+.||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCc-cccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEE
Q 000442 144 INEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTA-TEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQ 222 (1507)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1507)
+++++||||||||||||||||++|+||+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCccccCCCChHHHHHH
Q 000442 223 FDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVK 301 (1507)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1507)
||.+|.++||+|.+||||||||+.+++||||||||||||+ ++++++++|+|.++.+|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcceEeecC
Q 000442 302 TRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRVIMTRD 381 (1507)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~~~~~~ 381 (1507)
++.||+.|||+++++..||+|||||||||||+|....+.+.+.+.+.. .++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSE---ELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSH---HHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHH---HHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999987655555555543 69999999999999999999999999999
Q ss_pred CeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHH
Q 000442 382 ESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDP-NSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQ 460 (1507)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~ 460 (1507)
|.+++++++++|..+||+|||+||++||+|||.+||.+|+... ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998766 678899999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhhhcCCCcccccc-cChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHh-cCCCCccCC
Q 000442 461 HFNQHVFKMEQEEYTREEIDWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTF-KDHKRFSKP 538 (1507)
Q Consensus 461 ~f~~~~f~~eq~~y~~Egi~w~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~p 538 (1507)
+|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999888
Q ss_pred C----CCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCcc--------------------
Q 000442 539 K----LSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTE-------------------- 594 (1507)
Q Consensus 539 ~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~-------------------- 594 (1507)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||.....
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976432
Q ss_pred -cccCCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccch
Q 000442 595 -ESSKSSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMF 673 (1507)
Q Consensus 595 -~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 673 (1507)
......+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|.+||||+||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 0001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCC----CcchHHHHHHHhhhcCC--Ccceeccceeecc
Q 000442 674 HEFLSRFRILAPKVFDG----SCDEVTACKRLLQKVNL--KGYQIGKTKVFLR 720 (1507)
Q Consensus 674 ~~F~~ry~~L~~~~~~~----~~d~~~~~~~il~~~~~--~~~qiGkTKVFlr 720 (1507)
.+|++||++|++..... ..++++.|+.||..+++ ++|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999986532 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=2.4e-115 Score=1104.23 Aligned_cols=805 Identities=35% Similarity=0.510 Sum_probs=674.8
Q ss_pred CCCCcccccCcCCChHHHHHHHHhhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHH
Q 000442 61 QCGVDDMTKLAYLHEPGVLQNLRCRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAY 140 (1507)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay 140 (1507)
..+++||+.|.+++|+.+++||..||..+.||||+|.+|++||||+.+|.||.+..+..|.++.++++||||||+|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEE
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVE 220 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1507)
++|++...||||+||||||||||++|+++++||+.++. .....++++|+.+||+|||||||+|++|||||||||||+
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~ 216 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIK 216 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEE
Confidence 99999999999999999999999999999999999983 123578999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccCcceeccCCCCCcceeeecccc-CChhhHhhcCCCCCCccccccCCCcccc-CCCChHHH
Q 000442 221 LQFDERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA-GPAEDIEKYKLGNPRMFHYLNQSNFYEL-DGVDESKE 298 (1507)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~-~~~dd~~~ 298 (1507)
+.|...|.|.||.+.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+.+|+||+++.+..+ ++.+|..+
T Consensus 217 ~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~ 296 (1062)
T KOG4229|consen 217 VNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQ 296 (1062)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 6778899999999999999999999999 99999999
Q ss_pred HHHHHhhhhhcccChhhHHHHHHHHHHHHHhcCeeeecCC--CCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcce
Q 000442 299 YVKTRKAMEVVGINSDEQDAIFRVVAAILHLGNVEFAKGE--EADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKRV 376 (1507)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r~ 376 (1507)
|..+..||..+||+.+++.+||+++|||||+|||+|.... ..|.+.+.+. ..+..+|.||+++.+.|.+++|.++
T Consensus 297 ~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~---~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 297 FIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENE---EAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccc---hHHHHHHHHhhcCHHHhhhhhcccc
Confidence 9999999999999999999999999999999999997632 2345555544 4799999999999999999999999
Q ss_pred EeecCCeeeecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CcceEEEeeccccCCCCCCchhHHHhhhh
Q 000442 377 IMTRDESITKWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPN--SKVLIGVLDIYGFESFKTNSFEQFCINLT 454 (1507)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlciNya 454 (1507)
..+++|.+..+++.++|.++||++||++|++||.|||.+||..+..+.. +...||||||||||+|+.|||||+|||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654 47899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChHHHHHHHHHHhcCCCC
Q 000442 455 NEKLQQHFNQHVFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKDHKR 534 (1507)
Q Consensus 455 nEklq~~f~~~~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~ 534 (1507)
||+||++||+|||..||+||..|||+|..|.|.||++|+|+|..||.||+.+|||||.+|+++|.+++.|+..+++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCCCCC-CCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHHhcCCccccCcCCCCccccc----------------
Q 000442 535 FSKPKLS-LTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLSASGCPFVSGLFPPLTEESS---------------- 597 (1507)
Q Consensus 535 ~~~p~~~-~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~---------------- 597 (1507)
|..|+.. .+.|+|.||||.|.|++.||++||+|+++.++..++++|.+.++..++...+.+..
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 8877754 56999999999999999999999999999999999999999999888765332110
Q ss_pred ---------CC-----C---------CCcchhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCch-hHHHhhhc
Q 000442 598 ---------KS-----S---------KFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENT-NVLQQLRC 653 (1507)
Q Consensus 598 ---------~~-----~---------~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~-~v~~QLr~ 653 (1507)
+. + ...+++..++-++......|.+..+||.|||+||+.-.+..++.. .+..++..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 00 0 124567777778888888999999999999999999999999887 89999999
Q ss_pred cchhHHHHhhhccCCcccchHHHHHHHhhhccCccCCCcchHHHHHHHhhhcCCCcceeccceeecccchhhhccccccc
Q 000442 654 GGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDGSCDEVTACKRLLQKVNLKGYQIGKTKVFLRAGQMAELDSRRTQ 733 (1507)
Q Consensus 654 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~d~~~~~~~il~~~~~~~~qiGkTKVFlr~~~~~~Le~~r~~ 733 (1507)
.|...+....+.|+..+..|.+++++++...-.......-...+|..++...+.+.+..++++++-+...-..+.-.+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 99999999999999999999998887774432211111123455667777777777777777777765333333222222
Q ss_pred ccchhhHHHHhhhhcccccccccch-------------------------------hhhhHHHhhhhccccccceech--
Q 000442 734 VLGQSAIIIQSKVRSYFAHKRFNLL-------------------------------RCAAIQIQTLCRGQNGRYQYER-- 780 (1507)
Q Consensus 734 ~l~~aai~IQ~~~R~~l~Rk~~~~~-------------------------------~~aai~IQ~~~Rg~laR~~~~~-- 780 (1507)
...+. +..|...+.|..+.++... -..++.+|.-|-|...+.....
T Consensus 774 ~~t~~-~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~ 852 (1062)
T KOG4229|consen 774 RVTQL-RLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSL 852 (1062)
T ss_pred hhhhH-HHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecc
Confidence 21111 1222222222222211110 1123333433333222111100
Q ss_pred ------------------------------------------------------------hhhhhH---HHHHHHHHHHH
Q 000442 781 ------------------------------------------------------------MRREAA---SVKIQKYSRMC 797 (1507)
Q Consensus 781 ------------------------------------------------------------lr~~~a---ai~IQ~~~R~~ 797 (1507)
+..+.. +...|++++.-
T Consensus 853 ~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~ 932 (1062)
T KOG4229|consen 853 YFAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLT 932 (1062)
T ss_pred ccccccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhh
Confidence 000111 34467777777
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 000442 798 LARKDYHKLRSSAISIQTGLRGMAAHNDLRL-MKQTKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQCAWRGKVARGEL 874 (1507)
Q Consensus 798 ~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~-~r~~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~~~R~~~aRr~~ 874 (1507)
..++.+.++..+.+.+| ++++..|+.... .....+++-+|..|+.+..+..+...+++.+.+|..+++..-+..+
T Consensus 933 ~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 933 LERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 88888888888888888 777777764432 2234577788889999888888888888888888888776665554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=1.1e-30 Score=310.82 Aligned_cols=279 Identities=18% Similarity=0.327 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHhhcCC-CCCccchhhHHhHHHHHHHHHhhhhccCCCCCCCCCCCCCCcccccccccccCCccchhhH
Q 000442 1152 TSVFDRLIQLIGSAIENP-DSNDHLAYWLSNASTLLFLLQCSLKASGAAGSSQRKPPQPTSFFGRMTQGFRSSSASLSVD 1230 (1507)
Q Consensus 1152 ~~ll~~i~~~I~~~i~~~-~d~~~lafWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1230 (1507)
..||.++.+.++.+++++ ++-..|+|||+|+++++||++++...+.+.
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~ls~~~------------------------------- 643 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRDLSRIT------------------------------- 643 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccchhhee-------------------------------
Confidence 789999999999999998 555689999999999999999885544221
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 000442 1231 VVRQVEAKYPALLFKQQLTAYVETFYGIIRDNLKKDLSPHLSSCIQAPRMSKGNAIKSPASSRGSSPKSSPWNSIIDIVN 1310 (1507)
Q Consensus 1231 ~~~~v~~~~p~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~ 1310 (1507)
+.-+..|...|+.+|..|+.+++.+|++.+...++... ...+...+++..|+
T Consensus 644 -----------~~aq~vla~~vq~aFr~LV~clqsel~~~~~afLden~-----------------~~~~a~gdVlh~L~ 695 (1629)
T KOG1892|consen 644 -----------LDAQDVLAHLVQMAFRYLVHCLQSELNNYMPAFLDENS-----------------LQRPAIGDVLHTLT 695 (1629)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------------ccCccccchHHHhH
Confidence 12334477889999999999999999999877654221 12335568999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc--CCccccchhhHHHhchHHHHHHHhhccccccCChHHHhHH
Q 000442 1311 GLLRSLKENFVPRVLIQRIFTQIFSYINVQLFNSLLLR--RECCTFSNGEYVKQGLAELELWCGEAKEEYAGSSWDELKH 1388 (1507)
Q Consensus 1311 ~~l~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~ 1388 (1507)
..|.+|+.|+|+..|+.|+|+|||||||+++||+|+.. ..+|+--||--|++.|..||.||...|.+.+++ |||..
T Consensus 696 ~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~r 773 (1629)
T KOG1892|consen 696 GAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSR 773 (1629)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHH
Confidence 99999999999999999999999999999999999998 689999999999999999999999999888877 99999
Q ss_pred HHHHHHHHhccCCCccCHHHHHhccCCCCCHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHhhhccCCC---CCCCCcccc
Q 000442 1389 TRQAVGFLVIHQKTRISYDEITNDLCPVLSVQQLYRVCTLYWDDDYNTQSVSPDVISSMKILMTDDSN---EDDSNSFLL 1465 (1507)
Q Consensus 1389 l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~---~~~~~~lll 1465 (1507)
|+||++||++.|....|+..+ ...|.+||+.|+.+||+.|+++++|. ++|.+++..+..+....++ ..|+...-|
T Consensus 774 i~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~L 851 (1629)
T KOG1892|consen 774 IVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQL 851 (1629)
T ss_pred HHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeec
Confidence 999999999988777777777 68999999999999999999999995 9999999998665544332 355555444
Q ss_pred --cCCCcCccccCcccccccccCCCCCCCccccc
Q 000442 1466 --DDNSSIPFSVDDLSSTFQEKDFSDVKPAAELL 1497 (1507)
Q Consensus 1466 --D~~~~~Pf~~~~~~~~~~~~~~~~i~~p~~l~ 1497 (1507)
+.+.-+||.+++=.++.+.++ -||.-|.
T Consensus 852 EEspeL~LpfLlP~DGyscdvvR----~iP~GL~ 881 (1629)
T KOG1892|consen 852 EESPELQLPFLLPEDGYSCDVVR----NIPNGLQ 881 (1629)
T ss_pred ccCcccccceeecCCCceeeeec----cCChhHH
Confidence 556679999998555554443 2455553
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=2.5e-27 Score=233.05 Aligned_cols=105 Identities=37% Similarity=0.674 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhHHHHHHhhccCCccccchhhHHHhchHHHHHHHhhccccccCChHHHhHHHHHHHHHHhccCCCccCHH
Q 000442 1328 RIFTQIFSYINVQLFNSLLLRRECCTFSNGEYVKQGLAELELWCGEAKEEYAGSSWDELKHTRQAVGFLVIHQKTRISYD 1407 (1507)
Q Consensus 1328 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 1407 (1507)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|...+ +.++|.|++||++|||++|++..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999994333 68999999999999999665566655
Q ss_pred HHHhccCCCCCHHHHHHHHhcCCCCCCC
Q 000442 1408 EITNDLCPVLSVQQLYRVCTLYWDDDYN 1435 (1507)
Q Consensus 1408 ~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e 1435 (1507)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.27 E-value=3.5e-08 Score=134.71 Aligned_cols=617 Identities=15% Similarity=0.108 Sum_probs=282.2
Q ss_pred eeecccCcceeccCCCCCcceeeecccc-CC----hhhHhhcCCCCCCccccccCCCccccCCCChHHHHHHHHhhhhhc
Q 000442 235 RTYLLERSRVCQVSDPERNYHCFYMLCA-GP----AEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVKTRKAMEVV 309 (1507)
Q Consensus 235 ~~yLLEksRv~~~~~~ErnfHiFYql~~-~~----~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~l 309 (1507)
..+....+..+.++++..+||-|+.+.- .. ....+.|.|. .++...|+ ++.-+..-|-.+..+.
T Consensus 218 pvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE---KsRv~~Q~-----~~Er~yhiFyqlls~~--- 286 (1930)
T KOG0161|consen 218 PVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE---KSRVIRQA-----PGERNYHIFYQLLSGA--- 286 (1930)
T ss_pred chHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH---HhHhhccC-----cchhHHHHHHHHHhCC---
Confidence 3445556888889999999999999876 22 1233333332 22333332 2222333333333322
Q ss_pred ccChhhHHHHHHHHHHHHH-hcCeeeecCCCCCCCccCCcccHHHHHHHHHHcCCCHHHHHHhhhcc--eEeecC-Ceee
Q 000442 310 GINSDEQDAIFRVVAAILH-LGNVEFAKGEEADSSEPKDEKSRSHLKTAAELFMCDEKSLEDSMCKR--VIMTRD-ESIT 385 (1507)
Q Consensus 310 g~~~~~~~~i~~ilaaiLh-LGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~l~~~l~~r--~~~~~~-e~~~ 385 (1507)
.+......+ +-+ .-|-.|......--..+.|...-..+..+-..||+++++....+--- .+..|+ ++..
T Consensus 287 --~~~l~~~l~-----L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~ 359 (1930)
T KOG0161|consen 287 --DPELKEELL-----LSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQ 359 (1930)
T ss_pred --CHHHHHHHh-----hcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhc
Confidence 111111100 000 00111222111100011121112246667789999988766554321 112222 2222
Q ss_pred ecCCHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcceEEEeeccccCCCCCCchhHHHhhhhhHHHHHHHHHH
Q 000442 386 KWLDPAAAALNRDALAKIVYSRLFDWLVNKINNTIGQDPNSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQH 465 (1507)
Q Consensus 386 ~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyanEklq~~f~~~ 465 (1507)
.+ ..+||.-.....|-.+-. |+..=+.-...++..+ ...+.+-.++.|+... | .++|=+-|...-...
T Consensus 360 ~~-~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg~e~v~k~q~~~------q--~~~~v~alAk~lYer 427 (1930)
T KOG0161|consen 360 EP-REEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVGREWVSKAQNVE------Q--VLFAVEALAKALYER 427 (1930)
T ss_pred cc-cccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceeccchhhhhcchHH------H--HHHHHHHHHHHHHHH
Confidence 22 344443333333322211 2222222222333221 1124445566666533 3 677777777776667
Q ss_pred HhhhhHHHhhhcCCCcccccccChHHHHHHHhhCCCcccccccccccCCCCChH----HH-HHHHHHHhcCCCCccCCC-
Q 000442 466 VFKMEQEEYTREEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHE----TF-AQKLYQTFKDHKRFSKPK- 539 (1507)
Q Consensus 466 ~f~~eq~~y~~Egi~w~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~----~~-~~kl~~~~~~~~~~~~p~- 539 (1507)
+|. ....+...+++|. .+-..+|.+++-...-||.. .+=+ +| .+||.+-| +|.-|..-.
T Consensus 428 lF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkLQqfF-nh~mFvlEqe 492 (1930)
T KOG0161|consen 428 LFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKLQQFF-NHHMFVLEQE 492 (1930)
T ss_pred HHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHHHhhh-cchhhhhhHH
Confidence 774 4667778889887 44455555555432223322 1111 11 13444433 333332110
Q ss_pred ---CCCCCeEEEeeccceeeeccchhhhccCCCcHHHHHHHH-------hcCCccccCcCCCCcccccCCCCCcchhHHH
Q 000442 540 ---LSLTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQAVLS-------ASGCPFVSGLFPPLTEESSKSSKFSSIGSRF 609 (1507)
Q Consensus 540 ---~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~-------~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f 609 (1507)
--+-.+..-||+-+ -=.+.+-|+| |..+..+|- +|...|+..|+... .++..+|....
T Consensus 493 eY~~EgIew~fidfG~D-lq~~idLIEk-----p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~---~gk~~~f~~~k--- 560 (1930)
T KOG0161|consen 493 EYQREGIEWDFIDFGLD-LQPTIDLIEK-----PMGILSLLDEECVVPKATDKTFLEKLCDQH---LGKHPKFQKPK--- 560 (1930)
T ss_pred HHHHhCCceeeeccccc-hhhhHHHHhc-----hhhHHHHHHHHHhcCCCccchHHHHHHHHh---hccCccccCcc---
Confidence 01235666666211 1122333333 113444433 22333333332211 01222222221
Q ss_pred HHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccC
Q 000442 610 KQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFD 689 (1507)
Q Consensus 610 ~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~ 689 (1507)
+.+...-+....-+.+ |+|.-+|--.++..-.+..|+.+|++++ .+.|...-.| +..+..+..++.. ......
T Consensus 561 ~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~ 633 (1930)
T KOG0161|consen 561 GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKK 633 (1930)
T ss_pred cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCC
Confidence 2333444444444444 9999999988888888899999999999 8877766666 6777777776665 211111
Q ss_pred CC-----cchHHHHHHHhhhcCCCcceeccceeecc---cch---hhhcccccccccchhhHHHHhhhhcccccccccch
Q 000442 690 GS-----CDEVTACKRLLQKVNLKGYQIGKTKVFLR---AGQ---MAELDSRRTQVLGQSAIIIQSKVRSYFAHKRFNLL 758 (1507)
Q Consensus 690 ~~-----~d~~~~~~~il~~~~~~~~qiGkTKVFlr---~~~---~~~Le~~r~~~l~~aai~IQ~~~R~~l~Rk~~~~~ 758 (1507)
+. .-.+...-.++..+....-.|=+--|+.. +|. ...|..+|-..+-.. |.|. -.||-.|-.|...
T Consensus 634 g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEg-IRic--R~GfPnr~~~~eF 710 (1930)
T KOG0161|consen 634 GSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEG-IRIC--RQGFPNRMPFQEF 710 (1930)
T ss_pred cchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHH-HHHH--HhhCccccchHHH
Confidence 11 01122222333333222222212222211 111 111222222222111 1221 2244433333222
Q ss_pred hhhhHHHhhh--hcccccc-ceech----hhh-------hhHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 000442 759 RCAAIQIQTL--CRGQNGR-YQYER----MRR-------EAASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHN 824 (1507)
Q Consensus 759 ~~aai~IQ~~--~Rg~laR-~~~~~----lr~-------~~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk 824 (1507)
+.---.+... -.|+..- +-... +.. ...=+-..+-+-+++.-.+-.++...++.+|+.+|||++|+
T Consensus 711 rqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~ 790 (1930)
T KOG0161|consen 711 RQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARK 790 (1930)
T ss_pred HHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2100001000 0011110 00000 000 00001112222234444445566678889999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhHHHHHHHH
Q 000442 825 DLRLMKQ-TKAAIVIQSQYRQYLGRYRYLQMK---KAAIVVQCAWRGKVARGELRKLKM-------AAKETGALQAAKSK 893 (1507)
Q Consensus 825 ~~~~~r~-~~aA~~IQ~~~R~~~~R~~~~~~~---~a~i~iQ~~~R~~~aRr~~~~Lk~-------ea~~~~~l~~~~~~ 893 (1507)
.|..... ..|+.+||++.|.|+..+.|.|++ +.-..|++..+....++.-..++. .......+.....+
T Consensus 791 ~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~ 870 (1930)
T KOG0161|consen 791 EFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVK 870 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987776 557779999999999999998876 333445555444444433222221 12222344455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 894 LEKEVEELTWRLQLEKRMRADLEEA 918 (1507)
Q Consensus 894 le~k~~el~~rl~~e~r~~~~le~~ 918 (1507)
+..+..+++..+..++...++.++.
T Consensus 871 ~~~e~~~l~~~l~~e~~~~~~aee~ 895 (1930)
T KOG0161|consen 871 LLEEKNDLQEQLQAEKENLAEAEEL 895 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776665555543
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.66 E-value=2.4e-08 Score=109.32 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=68.6
Q ss_pred hhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcc-cccccCCC
Q 000442 132 PFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFG-NAKTLRNN 210 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFG-NAkT~~N~ 210 (1507)
||+.+..++..|+ ++.|+||+..|+||||||.++.--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8888889999998 5799999999999999998743211 00000011222 3778888999999 99999999
Q ss_pred CCCcccceEEEEEcCCCcee
Q 000442 211 NSSRFGKFVELQFDERGRIS 230 (1507)
Q Consensus 211 NSSRfgk~~~l~f~~~g~i~ 230 (1507)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654433
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.39 E-value=1e-06 Score=112.36 Aligned_cols=86 Identities=42% Similarity=0.502 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000442 784 EAASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQC 863 (1507)
Q Consensus 784 ~~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~ 863 (1507)
..+++.||+.+|+|..|+.|..+|.+++.+|+.+||+++|+ ... +..||+.||+.||+|..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999 333 778999999999999999999999999999999
Q ss_pred HHhHHHHHH
Q 000442 864 AWRGKVARG 872 (1507)
Q Consensus 864 ~~R~~~aRr 872 (1507)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.36 E-value=0.00013 Score=96.19 Aligned_cols=88 Identities=19% Similarity=0.115 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-H
Q 000442 785 AASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQ-C 863 (1507)
Q Consensus 785 ~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ-~ 863 (1507)
.+++.||+.|||+..|++|....+.+..+|...+|+..|+.........+++.+|..||....|..|+.....+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 367778888888888888877777777777777887777766666666677788888888888887777777777777 4
Q ss_pred HHhHHHHHH
Q 000442 864 AWRGKVARG 872 (1507)
Q Consensus 864 ~~R~~~aRr 872 (1507)
.+|....+.
T Consensus 826 i~~~~~~~~ 834 (1463)
T COG5022 826 IKREKKLRE 834 (1463)
T ss_pred HHHHHHHhH
Confidence 455544444
No 29
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.23 E-value=3e-06 Score=68.41 Aligned_cols=41 Identities=29% Similarity=0.634 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEEEecC
Q 000442 10 GSIVWTEDPEEAWIDGEVEEVNDEDIKIACTSGKTVVAKAS 50 (1507)
Q Consensus 10 g~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~~~~~ 50 (1507)
+.+|||||++++|+.|+|++..|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 46899999999999999999999999999999999988754
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.20 E-value=1.9e-06 Score=109.80 Aligned_cols=127 Identities=25% Similarity=0.271 Sum_probs=83.4
Q ss_pred cchhhHHHHhhhhcccccccccchhhhhHHHhhhhccccccceechhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 000442 735 LGQSAIIIQSKVRSYFAHKRFNLLRCAAIQIQTLCRGQNGRYQYERMRREAASVKIQKYSRMCLARKDYHKLRSSAISIQ 814 (1507)
Q Consensus 735 l~~aai~IQ~~~R~~l~Rk~~~~~~~aai~IQ~~~Rg~laR~~~~~lr~~~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQ 814 (1507)
...++..||.++|+|..|+.|.-++.-++.||+.+||+..|+.|+.+-. +... .++-|.+ +..+|
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w--Sv~~---------lek~~lr----wR~k~ 873 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW--SVGV---------LEKLILR----WRRKG 873 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech--hhhH---------HHHHHHH----HHHhh
Confidence 4467889999999999999999999999999999999999998877642 1111 1111111 11345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 000442 815 TGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGR--YRYLQMKKAAIVVQCAWRGKVARGELRKLK 878 (1507)
Q Consensus 815 s~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R--~~~~~~~~a~i~iQ~~~R~~~aRr~~~~Lk 878 (1507)
+.+|||..|+.....- .||+.||..+|.|..- ..|.++.+|++.||+.+|.+.++.+++++.
T Consensus 874 ~g~Rgfk~~~~~e~~~--~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 874 KGFRGFKGRALFEEQE--TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhcccccccchhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555433322 2666666666666655 556666667777777777766666666554
No 31
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.96 E-value=2.2e-06 Score=112.23 Aligned_cols=215 Identities=17% Similarity=0.093 Sum_probs=168.3
Q ss_pred chhHHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCCCCchhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhh
Q 000442 604 SIGSRFKQQLQALLETLSATEPHYIRCVKPNNVLKPSIFENTNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRIL 683 (1507)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~hfIrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L 683 (1507)
.-..++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+|+..+++.+|..-+++.
T Consensus 790 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~ 869 (1062)
T KOG4229|consen 790 QPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIG 869 (1062)
T ss_pred ccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhcccccccc
Confidence 33346677788899999999999999999998888999999999999999999999999999999999999999999988
Q ss_pred ccCccCCCcchHHHHHHHhhhc--CCCcceeccceeecccchhhhccccc-ccccchhhHHHHhhhhcccccccccchhh
Q 000442 684 APKVFDGSCDEVTACKRLLQKV--NLKGYQIGKTKVFLRAGQMAELDSRR-TQVLGQSAIIIQSKVRSYFAHKRFNLLRC 760 (1507)
Q Consensus 684 ~~~~~~~~~d~~~~~~~il~~~--~~~~~qiGkTKVFlr~~~~~~Le~~r-~~~l~~aai~IQ~~~R~~l~Rk~~~~~~~ 760 (1507)
.|..... ........+ +.++++.|.+++|+...-...++..- .+.....+...|++++....++.+.++..
T Consensus 870 ~~~~~~~------v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 943 (1062)
T KOG4229|consen 870 LPETVDT------VADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSE 943 (1062)
T ss_pred CCccchh------hchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcc
Confidence 8732211 111111111 34689999999999765543332221 11111136778999999999999999999
Q ss_pred hhHHHhhhhccccccceec-hhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000442 761 AAIQIQTLCRGQNGRYQYE-RMRREAASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHNDL 826 (1507)
Q Consensus 761 aai~IQ~~~Rg~laR~~~~-~lr~~~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~ 826 (1507)
+.+.+| |++++.|+... ......++..+|..|+.+..+..+...+.+++.+|..+++...+..+
T Consensus 944 ~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 944 GSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 999999 88888887655 23344578889999999999999999999999999988877666543
No 32
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.94 E-value=8.1e-06 Score=104.33 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=95.9
Q ss_pred hhhHHHHhhhhccccccccc------------chhhhhHHHhhhhccccccceechhhhhhHHHHHHHHHHHHHHHHhhh
Q 000442 737 QSAIIIQSKVRSYFAHKRFN------------LLRCAAIQIQTLCRGQNGRYQYERMRREAASVKIQKYSRMCLARKDYH 804 (1507)
Q Consensus 737 ~aai~IQ~~~R~~l~Rk~~~------------~~~~aai~IQ~~~Rg~laR~~~~~lr~~~aai~IQ~~~R~~~~Rr~~~ 804 (1507)
.++..||..+|...-+++-. ......+.++..+++ +...+...||..||+.+|+|..|+.|.
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~------~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSM------CDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhc------CccccchhHHHHhhhhhhhHHhhhhhc
Confidence 45566777776654432211 112223344444442 233344568999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 000442 805 KLRSSAISIQTGLRGMAAHNDLRLMKQ--------TKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQCAWRGKVARG 872 (1507)
Q Consensus 805 ~lr~a~i~iQs~~Rg~~aRk~~~~~r~--------~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~~~R~~~aRr 872 (1507)
.++.-++.||+.+||+..|+.|.+... .-++..+|...|+|..|+.....-.+++.||...|.+..-+
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~ 906 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLR 906 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHH
Confidence 999999999999999999999864321 45777899999999999999888889999999998876653
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.03 Score=69.46 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=7.0
Q ss_pred HHHHHhcCCC
Q 000442 1422 LYRVCTLYWD 1431 (1507)
Q Consensus 1422 l~kiL~~Y~~ 1431 (1507)
+.+++.+|.|
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 5566778876
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.035 Score=68.82 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=12.6
Q ss_pred CCccccchhhHHHhchHHHHHHHh
Q 000442 1349 RECCTFSNGEYVKQGLAELELWCG 1372 (1507)
Q Consensus 1349 ~~~cs~s~G~qIr~nls~Le~W~~ 1372 (1507)
-+-+||++|--|- =|..=+.|-.
T Consensus 827 e~dLsFskgd~I~-VlekqemwW~ 849 (1118)
T KOG1029|consen 827 ENDLSFSKGDTIT-VLEKQEMWWF 849 (1118)
T ss_pred cccccccCCCeee-eehhccceec
Confidence 3577888886542 2333345543
No 35
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.30 E-value=0.5 Score=60.18 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCHHH
Q 000442 1299 SSPWNSIIDIVNGLLRSLKENFVPRVL 1325 (1507)
Q Consensus 1299 ~~~~~~il~~L~~~l~~L~~~~v~~~l 1325 (1507)
...+...+..+++++..+....++++.
T Consensus 898 ~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 898 YECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345678888888888888877666553
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.27 E-value=0.1 Score=65.97 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=24.7
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 983 DHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKE 1028 (1507)
Q Consensus 983 ~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~ 1028 (1507)
++...+++.++++....++.+++...+.+..++..++....++.++
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666555555555555555555555555544444433
No 37
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.02 E-value=0.0036 Score=76.75 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Q 000442 785 AASVKIQKYSRMCLARKDYHKLRSSAISIQTGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQ----------M 854 (1507)
Q Consensus 785 ~aai~IQ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~----------~ 854 (1507)
.-++.||+.||||++|.+|++++.+++.|+ ++|.+..+ .++..||+.+|++..++.|.+ +
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~~L 766 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPLVL 766 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCchHH
Confidence 467889999999999999999999999998 77743222 255579999999999988865 3
Q ss_pred hHHHHHHHHHHhHHHHHHHHH
Q 000442 855 KKAAIVVQCAWRGKVARGELR 875 (1507)
Q Consensus 855 ~~a~i~iQ~~~R~~~aRr~~~ 875 (1507)
+.+.-.+|..+-.|.+.+-++
T Consensus 767 r~~~~~L~~lf~rwra~~~~~ 787 (1001)
T KOG0164|consen 767 REFEELLRELFIRWRAWQILK 787 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555665555555555443
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.26 Score=63.73 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 922 ENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMERE 964 (1507)
Q Consensus 922 e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~e 964 (1507)
+-.++...++++.+.+++.++++.......++.......+|..
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~ 777 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKK 777 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666665555555555544444433
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.01 E-value=1.1 Score=63.49 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.6
Q ss_pred chhhHHhH
Q 000442 1175 LAYWLSNA 1182 (1507)
Q Consensus 1175 lafWLSN~ 1182 (1507)
+.|||+|+
T Consensus 616 ~~~~lg~~ 623 (1164)
T TIGR02169 616 FKYVFGDT 623 (1164)
T ss_pred HHHHCCCe
Confidence 34445443
No 40
>PRK11637 AmiB activator; Provisional
Probab=96.95 E-value=0.21 Score=62.24 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000442 894 LEKEVEELTWRLQ 906 (1507)
Q Consensus 894 le~k~~el~~rl~ 906 (1507)
++.++..+..++.
T Consensus 73 ~~~~l~~l~~qi~ 85 (428)
T PRK11637 73 LLAQLKKQEEAIS 85 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.93 E-value=2 Score=60.81 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 000442 520 TFAQKLY 526 (1507)
Q Consensus 520 ~~~~kl~ 526 (1507)
+++..+.
T Consensus 38 ~ildAi~ 44 (1164)
T TIGR02169 38 NIGDAIL 44 (1164)
T ss_pred HHHHHHH
Confidence 3444443
No 42
>PRK11637 AmiB activator; Provisional
Probab=96.92 E-value=0.37 Score=60.09 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 000442 896 KEVEELTWRLQ 906 (1507)
Q Consensus 896 ~k~~el~~rl~ 906 (1507)
.++..+..++.
T Consensus 82 ~qi~~~~~~i~ 92 (428)
T PRK11637 82 EAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.89 E-value=0.38 Score=63.29 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 000442 809 SAISIQTGLRGMAAHN 824 (1507)
Q Consensus 809 a~i~iQs~~Rg~~aRk 824 (1507)
+.+.-|-..|.|++-.
T Consensus 179 ~~~lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 179 MFVLSQDAARSFLANS 194 (1074)
T ss_pred chhhcHHHHHHHHhcC
Confidence 3445577777777543
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.75 Score=60.74 Aligned_cols=48 Identities=25% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHhccCCCccCHHHHHhcc---CCCCCHHHHHHHHhcCCCCC
Q 000442 1383 WDELKHTRQAVGFLVIHQKTRISYDEITNDL---CPVLSVQQLYRVCTLYWDDD 1433 (1507)
Q Consensus 1383 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~---C~~Ls~~Ql~kiL~~Y~~d~ 1433 (1507)
.++|.|..+-+.|-+.| ++.++..|- .+ =-.||+.=|.-.|.+|+|..
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I~-NLSGGEKTLSSLALVFALH~YkPTP 1219 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNIS-NLSGGEKTLSSLALVFALHHYKPTP 1219 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhcc-cCCcchhHHHHHHHHHHHHccCCCC
Confidence 45666777777777766 455666552 22 25677777778888888753
No 45
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.81 E-value=1 Score=56.42 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000442 792 KYSRMCLARKDYHKLRSSAISIQTGLRGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQMK 855 (1507)
Q Consensus 792 ~~~R~~~~Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~~~ 855 (1507)
+-+..|+.+.+|.+..-++..+=. .+. +-.-+..+.+++|+..|||++|++++...
T Consensus 781 ~kVn~WLv~sRWkk~q~~a~sVIK------LkN--kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 781 AKVNKWLVRSRWKKSQYGALSVIK------LKN--KIIYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHhHHHHhhhhhhheee------hhh--HHHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 345678888888766543221100 011 11112346778999999999999887554
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=2.4 Score=55.41 Aligned_cols=31 Identities=23% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcC
Q 000442 125 LGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGG 178 (1507)
Q Consensus 125 ~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1507)
..+.+||-=| |+|=.|||||- |+.-+|++=|
T Consensus 20 I~~fDp~FNA-------------------ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNA-------------------ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred ccCCCcccch-------------------hhcCCCCCchH----HHHHHHHHHc
Confidence 5677888766 89999999995 5666666544
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.65 E-value=1.2 Score=58.15 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1040 KTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1040 ~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+.+++-++..+..-+.|+..|++
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555544444
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.64 E-value=0.53 Score=58.64 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.0
Q ss_pred hhhccCCcccch
Q 000442 662 ISCAGYPTRKMF 673 (1507)
Q Consensus 662 i~~~Gyp~r~~~ 673 (1507)
|.+.||.+-..|
T Consensus 42 iFKVGw~s~rdY 53 (546)
T PF07888_consen 42 IFKVGWSSTRDY 53 (546)
T ss_pred EeecCCCchhhe
Confidence 334444443333
No 49
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.63 E-value=0.0027 Score=43.23 Aligned_cols=20 Identities=65% Similarity=0.923 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000442 833 KAAIVIQSQYRQYLGRYRYL 852 (1507)
Q Consensus 833 ~aA~~IQ~~~R~~~~R~~~~ 852 (1507)
+||+.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47777777777777777663
No 50
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=4.7 Score=53.71 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.0
Q ss_pred chhhhccc
Q 000442 722 GQMAELDS 729 (1507)
Q Consensus 722 ~~~~~Le~ 729 (1507)
|.+.+||.
T Consensus 251 GmLEYLED 258 (1293)
T KOG0996|consen 251 GMLEYLED 258 (1293)
T ss_pred hHHHHHHH
Confidence 44455554
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=96.49 E-value=2.2 Score=58.50 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.4
Q ss_pred CCHHHHHHH
Q 000442 1439 VSPDVISSM 1447 (1507)
Q Consensus 1439 v~~~~i~~v 1447 (1507)
+++.-...+
T Consensus 824 lD~~~~~~~ 832 (880)
T PRK02224 824 LDSGHVSQL 832 (880)
T ss_pred CCHHHHHHH
Confidence 444433333
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.45 E-value=3.3 Score=58.62 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.2
Q ss_pred EEEEeCCCCCCchhHHHH
Q 000442 151 SILVSGESGAGKTESTKM 168 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~ 168 (1507)
..+|.|++|||||.....
T Consensus 25 ~~~i~G~NGsGKS~ll~a 42 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDA 42 (1179)
T ss_pred cEEEECCCCCChhHHHHH
Confidence 678999999999986544
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.38 E-value=8.8 Score=54.16 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.4
Q ss_pred chhhHHhH
Q 000442 1175 LAYWLSNA 1182 (1507)
Q Consensus 1175 lafWLSN~ 1182 (1507)
+.|||+++
T Consensus 609 ~~~~l~~t 616 (1163)
T COG1196 609 VRFVLGDT 616 (1163)
T ss_pred HHHHhCCe
Confidence 34444443
No 54
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.36 E-value=0.004 Score=42.41 Aligned_cols=20 Identities=50% Similarity=0.642 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 000442 785 AASVKIQKYSRMCLARKDYH 804 (1507)
Q Consensus 785 ~aai~IQ~~~R~~~~Rr~~~ 804 (1507)
.||++||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 37788888888888888763
No 55
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.34 E-value=2 Score=46.29 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLS--------------EERLKEALEAESKIIELKTCMQRLEEKLS 1051 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~--------------ee~~~~l~~lE~e~~~L~~~~~~Le~~l~ 1051 (1507)
.+..|+.++..+..+.+.+.++..++..+...++... .+....+.++..-+.........|+.+++
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544444444332 11222233344334444444555555555
Q ss_pred hHHHHH
Q 000442 1052 DIETED 1057 (1507)
Q Consensus 1052 ~LE~E~ 1057 (1507)
.||+.+
T Consensus 183 ~LEeql 188 (193)
T PF14662_consen 183 RLEEQL 188 (193)
T ss_pred HHHHHH
Confidence 555443
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.33 E-value=1.7 Score=52.55 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000442 1028 EALEAESKIIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 1028 ~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
.+..-+.+++.|..+-..|++.+..++.++.
T Consensus 218 ~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 218 ELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555554443
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.32 E-value=0.54 Score=61.35 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEET 1018 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el 1018 (1507)
+..+|+.|++.|+.++...++++..++.+..++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554433
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.22 E-value=5.5 Score=56.21 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=67.4
Q ss_pred EEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccchhhhcccccccCCCCCCcccceEEEEEcCCCceeee
Q 000442 153 LVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDERGRISGA 232 (1507)
Q Consensus 153 iisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga 232 (1507)
.|+|+.|||||-..=.|.--|..-+.++ -.+..+.+-| .---|+ +.+.| =-.++|.||..+.-.+.
T Consensus 28 ~IvGPNGSGKSNI~DAi~fVLG~~s~k~-lRa~~~~DlI------f~g~~~-r~~~~------~A~V~l~fdN~d~~~~~ 93 (1163)
T COG1196 28 AIVGPNGSGKSNIVDAIRFVLGEQSAKN-LRASKMSDLI------FAGSGN-RKPAN------YAEVELTFDNSDNTLPL 93 (1163)
T ss_pred EEECCCCCchHHHHHHHHHHhCcchhhh-hhccCCccee------eCCCCC-CCCCC------ceEEEEEEeCCCCcCCc
Confidence 4899999999976655555443221110 0112222211 111111 11112 13688888876633333
Q ss_pred eeeeecccC--cceeccCCCCCcceeeeccccCC--hhhHhhcCCCCCCccccccCCCccccCCCChHHHHHHHHhhhhh
Q 000442 233 AIRTYLLER--SRVCQVSDPERNYHCFYMLCAGP--AEDIEKYKLGNPRMFHYLNQSNFYELDGVDESKEYVKTRKAMEV 308 (1507)
Q Consensus 233 ~i~~yLLEk--sRv~~~~~~ErnfHiFYql~~~~--~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~ 308 (1507)
... |- +|-+.. .|+..|=|==.-|... .+.....+++ +..|..+.||.. -.+
T Consensus 94 ~~~----ei~v~Rri~r-~g~S~Y~INg~~~~~~dI~~l~~~~gi~-~~~~~iV~QG~V------------------~~i 149 (1163)
T COG1196 94 EYE----EISVTRRIYR-DGESEYYINGEKVRLKDIQDLLADSGIG-KESYSIVSQGKV------------------EEI 149 (1163)
T ss_pred ccc----eEEEEEEEEE-cCCcEEEECCcEeeHHHHHHHHHhcCCC-CCCCceeecccH------------------HHH
Confidence 332 31 344444 5663333222222210 1223444554 455678888753 234
Q ss_pred cccChhhHHHHHHHHHHHHH
Q 000442 309 VGINSDEQDAIFRVVAAILH 328 (1507)
Q Consensus 309 lg~~~~~~~~i~~ilaaiLh 328 (1507)
+..++.+...||.=.|||+-
T Consensus 150 ~~~kp~err~iiEEaaGv~~ 169 (1163)
T COG1196 150 INAKPEERRKLIEEAAGVSK 169 (1163)
T ss_pred HcCCHHHHHHHHHHHhchHH
Confidence 45667777777777777764
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.20 E-value=5.9 Score=56.32 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.6
Q ss_pred cCCcccchHHHH
Q 000442 666 GYPTRKMFHEFL 677 (1507)
Q Consensus 666 Gyp~r~~~~~F~ 677 (1507)
|.|.++...+|+
T Consensus 125 ~~~~~v~~~d~l 136 (1486)
T PRK04863 125 GLPDSVQPTDLL 136 (1486)
T ss_pred cCccccChHHHH
Confidence 344444444444
No 60
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.17 E-value=0.053 Score=72.25 Aligned_cols=117 Identities=24% Similarity=0.250 Sum_probs=65.8
Q ss_pred hHHHhhhhccccccceechhhhhh---HHHHHHHHHHHHHHHHhhhhh-------hhhhhhHHHHHHHHHH--HHHHHHH
Q 000442 762 AIQIQTLCRGQNGRYQYERMRREA---ASVKIQKYSRMCLARKDYHKL-------RSSAISIQTGLRGMAA--HNDLRLM 829 (1507)
Q Consensus 762 ai~IQ~~~Rg~laR~~~~~lr~~~---aai~IQ~~~R~~~~Rr~~~~l-------r~a~i~iQs~~Rg~~a--Rk~~~~~ 829 (1507)
.+..|+.+||...|.....+-... -..++|+..||+..|..+... -..+.-+|+.|||++. -+.....
T Consensus 510 ~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~ 589 (1401)
T KOG2128|consen 510 LISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLD 589 (1401)
T ss_pred HhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHH
Confidence 344666666665554322221111 112336677776666554322 2345567777777763 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhHHHHHHHHHHHH
Q 000442 830 KQTKAAIVIQSQYRQYLGRYRYLQMK-------KAAIVVQCAWRGKVARGELRKLK 878 (1507)
Q Consensus 830 r~~~aA~~IQ~~~R~~~~R~~~~~~~-------~a~i~iQ~~~R~~~aRr~~~~Lk 878 (1507)
-..+.++.+|++.||+.+|+.|.+.. .+++.||+..|....|..|+.|.
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 22456667777777777776655433 57777888888888887777665
No 61
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.14 E-value=4 Score=47.85 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=45.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000442 985 VMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETED 1057 (1507)
Q Consensus 985 ~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~ 1057 (1507)
..++..++++...+........++......+...........+.+.+-|.++..+++....|+.++.+||.-.
T Consensus 210 ~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 210 NAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666555555555566666666667777777777777666543
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.14 E-value=1.6 Score=49.05 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=26.7
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 984 HVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAE 1033 (1507)
Q Consensus 984 ~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE 1033 (1507)
......|+.++..++.....++.++.++..+...++.....+..++...+
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566555555555555555555555555555544444444443
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.12 E-value=8.4 Score=51.43 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 989 KLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 989 ~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.++.++.+.+..+..|+.++++++..+..+..+.++..+++...+++....+..+..|+..+.....++..|+
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555555555555556666665555555555554
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.02 E-value=2.8 Score=50.27 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=47.5
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHH
Q 000442 983 DHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLE----EKLSDIETEDQ 1058 (1507)
Q Consensus 983 ~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le----~~l~~LE~E~~ 1058 (1507)
+...++.+..++...+..+...++++.+++.++..++...++...+..++..++.+++...+.-+ .++..|..+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34445555555555555555555566666666655555555555555555555555544443322 35667777777
Q ss_pred HHHHhhcc
Q 000442 1059 ILRHQALF 1066 (1507)
Q Consensus 1059 ~Lk~qal~ 1066 (1507)
.|+...-|
T Consensus 287 ~Le~~~gw 294 (325)
T PF08317_consen 287 ALEKLTGW 294 (325)
T ss_pred HHHHHHCc
Confidence 77765444
No 65
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.75 Score=55.70 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHh
Q 000442 1006 KKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEE----------KLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1006 ~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~----------~l~~LE~E~~~Lk~q 1063 (1507)
.+...+..++.+.+.+-..+..+-.++|+++-.|++++..|+. ++.+|+++.+-+.++
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555556666666666666655543 667777777777665
No 66
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.88 E-value=0.0067 Score=71.94 Aligned_cols=56 Identities=29% Similarity=0.386 Sum_probs=42.8
Q ss_pred ecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHH
Q 000442 102 VNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTEST 166 (1507)
Q Consensus 102 vNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1507)
+|||...| |+......++. +.+||-|-| -+.=|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999997 87766555543 456776544 3556666778999999999999999754
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.85 E-value=14 Score=52.74 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHHH
Q 000442 1043 MQRLEEKLSDIETE 1056 (1507)
Q Consensus 1043 ~~~Le~~l~~LE~E 1056 (1507)
...++.++.+|+..
T Consensus 515 ~~~~~~~~~~l~~~ 528 (1486)
T PRK04863 515 LQQLRMRLSELEQR 528 (1486)
T ss_pred hHHHHHHHHHHHHH
Confidence 33344444444443
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.85 E-value=2.9 Score=47.69 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.+..|+.++..+...+..++....+........+..+..+..++.+.+......+..+..|+..+..|++++...+
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443334333333333333333343444444444555555555555555555556666655555444
No 69
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.71 E-value=2.9 Score=44.89 Aligned_cols=76 Identities=21% Similarity=0.196 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.+.+|..+..-+...+..+....+.+..+....+.....+..++.+.+..-...+..+..|++++.+|++.+...+
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 3444555555555555555555555555544444444445555555555555555556666666655555554443
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.71 E-value=2.5 Score=54.48 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=8.6
Q ss_pred ccCCCcCccccCc
Q 000442 1465 LDDNSSIPFSVDD 1477 (1507)
Q Consensus 1465 lD~~~~~Pf~~~~ 1477 (1507)
|-++..+||-+-.
T Consensus 594 L~~~pcipffy~~ 606 (617)
T PF15070_consen 594 LGSNPCIPFFYRA 606 (617)
T ss_pred CCCCCcccceeec
Confidence 6666778886543
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.70 E-value=3.9 Score=53.43 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 885 GALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFE 938 (1507)
Q Consensus 885 ~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~le 938 (1507)
..++.....|+.+++.|..++.......+++++. .++|..+.++|+...+
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~----~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDL----EKKLQFELEKLLEETS 453 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444555667777777777777666666666553 3334444444443333
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.69 E-value=2.4 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=14.7
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 984 HVMVNKLTAENEELKALVSSLEKKIDET 1011 (1507)
Q Consensus 984 ~~~~~~L~~e~~~lq~~~~~le~~~~el 1011 (1507)
...+..+.+++..++.++..++..+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555433
No 73
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.46 E-value=0.16 Score=67.87 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=63.3
Q ss_pred Hhhhhccccccceechh----h-hhhHHHHHHHHHHHHHH----HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----
Q 000442 765 IQTLCRGQNGRYQYERM----R-REAASVKIQKYSRMCLA----RKDYHKLRSSAISIQTGLRGMAAHNDLRLMKQ---- 831 (1507)
Q Consensus 765 IQ~~~Rg~laR~~~~~l----r-~~~aai~IQ~~~R~~~~----Rr~~~~lr~a~i~iQs~~Rg~~aRk~~~~~r~---- 831 (1507)
+|+..||+..|..++.. + ..-...-||..|||++. ...+.....-++.+|++.||+++|+.+....+
T Consensus 541 ~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~ 620 (1401)
T KOG2128|consen 541 IQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKD 620 (1401)
T ss_pred hhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36666666665544331 1 23456678888888773 22234445677888899999888888755443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhh
Q 000442 832 -TKAAIVIQSQYRQYLGRYRYLQMK 855 (1507)
Q Consensus 832 -~~aA~~IQ~~~R~~~~R~~~~~~~ 855 (1507)
..+.+.||++.|+...|..|..+.
T Consensus 621 ~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 621 NMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhhhHHHHHHHHHhcccchHHHHHh
Confidence 567889999999999999998765
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.33 E-value=8 Score=50.74 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 921 QENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMERE 964 (1507)
Q Consensus 921 ~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~e 964 (1507)
.+.++|..+.+.|+.++.++.+++.+-.+..+.+..+.+++..+
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777766666655555555555555554444
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.32 E-value=3.5 Score=43.08 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000442 923 NAKLKSALQEMQQQFEETKT 942 (1507)
Q Consensus 923 ~~kL~~~l~ele~~lee~~~ 942 (1507)
+..|..++..++.+++.+..
T Consensus 37 I~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544443
No 76
>PRK09039 hypothetical protein; Validated
Probab=95.28 E-value=2.1 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000442 894 LEKEVEELTWRLQLEKRMRADLE 916 (1507)
Q Consensus 894 le~k~~el~~rl~~e~r~~~~le 916 (1507)
++.++.++..-+..++....+++
T Consensus 58 L~~qIa~L~e~L~le~~~~~~l~ 80 (343)
T PRK09039 58 LNSQIAELADLLSLERQGNQDLQ 80 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 44445555555554444444433
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.21 E-value=7.5 Score=44.40 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000442 1002 SSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETED 1057 (1507)
Q Consensus 1002 ~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~ 1057 (1507)
..++.++..+..++.+++.+.+.....+..++..++.++..+...+.....+..++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=95.17 E-value=4.4 Score=55.61 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.9
Q ss_pred EEEeCCCCCCchhHHHHH
Q 000442 152 ILVSGESGAGKTESTKML 169 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~ 169 (1507)
.+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 569999999999877644
No 79
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.17 E-value=0.25 Score=58.67 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=73.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc-CCccccchhhHHHhchHHHHHHHhhcc
Q 000442 1297 PKSSPWNSIIDIVNGLLRSLKENFVPRVLIQRIFTQIFSYINVQLFNSLLLR-RECCTFSNGEYVKQGLAELELWCGEAK 1375 (1507)
Q Consensus 1297 ~~~~~~~~il~~L~~~l~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~ 1375 (1507)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..|-.--.++...|..+|.++.+..
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 34556788999999888554 5689999999999999999999999998764 355566666789999999999999871
Q ss_pred c--cccCChHHHhHHHHHHHHHHhccCCCccCHHHHHhccCCCCCHHHHHHHHhcCC
Q 000442 1376 E--EYAGSSWDELKHTRQAVGFLVIHQKTRISYDEITNDLCPVLSVQQLYRVCTLYW 1430 (1507)
Q Consensus 1376 ~--~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~ 1430 (1507)
. .-.+.....|..|+|.++||....-..--.-.++..-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 0 124566789999999999998754333311255555678999999999988774
No 80
>PRK09039 hypothetical protein; Validated
Probab=95.15 E-value=1.4 Score=53.02 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000442 921 QENAKLKSALQEMQQQFEE 939 (1507)
Q Consensus 921 ~e~~kL~~~l~ele~~lee 939 (1507)
.....++..+.+++.+++.
T Consensus 74 ~~~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSA 92 (343)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3344455555555555443
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.10 E-value=2.9 Score=53.88 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 885 GALQAAKSKLEKEVEELTWRLQLEKRM 911 (1507)
Q Consensus 885 ~~l~~~~~~le~k~~el~~rl~~e~r~ 911 (1507)
+..+..-...++.+.++++.++..++.
T Consensus 354 ~ear~~~~q~~~ql~~le~~~~e~q~~ 380 (980)
T KOG0980|consen 354 EEARRRIEQYENQLLALEGELQEQQRE 380 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444555666666676666655443
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.09 E-value=7.7 Score=46.53 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhH
Q 000442 1042 CMQRLEEKLSDI 1053 (1507)
Q Consensus 1042 ~~~~Le~~l~~L 1053 (1507)
++.+|+.++..|
T Consensus 277 Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 277 EVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.01 E-value=13 Score=46.25 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=28.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 985 VMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIEL 1039 (1507)
Q Consensus 985 ~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L 1039 (1507)
..+.+.+.+..+.+.....+++..+++...+++....+.....++.+++++....
T Consensus 425 el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 425 ELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555544554444444433
No 84
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.93 E-value=9.5 Score=45.27 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHhhcc
Q 000442 1001 VSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLE----EKLSDIETEDQILRHQALF 1066 (1507)
Q Consensus 1001 ~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le----~~l~~LE~E~~~Lk~qal~ 1066 (1507)
+....+++.++++++.++....++...+..+++.++.+++..++.-+ .++..|..+.+.++..+-|
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333334333333333333333333333333333332221 2555666666666666544
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.88 E-value=8.2 Score=51.10 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=25.3
Q ss_pred hhhccCccccccCceEEEecCCCCCCCCCCHHHHHHhh
Q 000442 84 CRYDVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYK 121 (1507)
Q Consensus 84 ~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~ 121 (1507)
.||..-.+-|----|+-++-|--.+++-|++++.+.-+
T Consensus 192 SrYS~~~PstgGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPSTGGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCCCCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 45655555332224567788888888999998877654
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.75 E-value=7.1 Score=43.33 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Q 000442 987 VNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEA-LEAESKIIELKTCMQRLEEKLSDIE 1054 (1507)
Q Consensus 987 ~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l-~~lE~e~~~L~~~~~~Le~~l~~LE 1054 (1507)
+..+++++..++-+.+.++.+...++.+..++....+....++ +...-+..-|+..+..|.+.+..-+
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666655544444333 2233334444555555544443333
No 87
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.54 E-value=0.041 Score=39.61 Aligned_cols=21 Identities=57% Similarity=0.917 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000442 832 TKAAIVIQSQYRQYLGRYRYL 852 (1507)
Q Consensus 832 ~~aA~~IQ~~~R~~~~R~~~~ 852 (1507)
.++|+.||+.||||++|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 457888999999999888873
No 88
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.53 E-value=4.9 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1039 LKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1039 L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
+-..+++|+++-.+|..|+....
T Consensus 162 llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.52 E-value=8.7 Score=51.64 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=18.0
Q ss_pred CeEEEeeccceeeeccchhhhc-----cCCCcHHHHHHHHh
Q 000442 544 DFTICHYAGDVTYQTELFLDKN-----KDYVVPEHQAVLSA 579 (1507)
Q Consensus 544 ~F~i~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 579 (1507)
+....-|+-.+.-+.+|-+.-+ -|.++|+++.-...
T Consensus 213 HikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 213 HIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred cEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 3344444444444445544433 36677776655443
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.52 E-value=5.9 Score=53.09 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHHH--------HHHhhccC
Q 000442 1320 FVPRVLIQRIFTQIFSYINVQL--------FNSLLLRR 1349 (1507)
Q Consensus 1320 ~v~~~l~~Q~f~Qlf~~ina~l--------fN~Ll~r~ 1349 (1507)
--...++++..++|-.-++... +|.+.+++
T Consensus 978 ~~e~~v~~aa~~kl~eif~r~~~~i~~~~~~~t~~l~k 1015 (1317)
T KOG0612|consen 978 VTERDVKHAAVNKLAEIFNRKTSLIPGKKSTNTLDLRK 1015 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHH
Confidence 3344567777777776666655 56666653
No 91
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.52 E-value=7.9 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1040 KTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1040 ~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
+.-+.+|+.++.+|--|...|-|.
T Consensus 200 Q~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 200 QAYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555443
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.49 E-value=13 Score=53.33 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCCchhHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367899999999998777665
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=94.46 E-value=17 Score=49.85 Aligned_cols=14 Identities=7% Similarity=0.041 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHhhh
Q 000442 1438 SVSPDVISSMKILM 1451 (1507)
Q Consensus 1438 ~v~~~~i~~v~~~~ 1451 (1507)
.+++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 35555444444333
No 94
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.45 E-value=0.04 Score=39.69 Aligned_cols=21 Identities=43% Similarity=0.441 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 000442 784 EAASVKIQKYSRMCLARKDYH 804 (1507)
Q Consensus 784 ~~aai~IQ~~~R~~~~Rr~~~ 804 (1507)
..+|+.||++||||++|++|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 347888888888888888873
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.44 E-value=4.2 Score=45.87 Aligned_cols=6 Identities=0% Similarity=-0.059 Sum_probs=2.2
Q ss_pred chHHHH
Q 000442 1132 VAAFTI 1137 (1507)
Q Consensus 1132 ~~A~il 1137 (1507)
.+..||
T Consensus 226 ~CgRIL 231 (239)
T COG1579 226 YCGRIL 231 (239)
T ss_pred ccchHH
Confidence 333333
No 96
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.35 E-value=37 Score=48.27 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=15.2
Q ss_pred HHhcCCCCCCCCCCCCHH-HHHHHHhhhc
Q 000442 1425 VCTLYWDDDYNTQSVSPD-VISSMKILMT 1452 (1507)
Q Consensus 1425 iL~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 1452 (1507)
....|+..+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 34455333333 358888 8877765554
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.34 E-value=14 Score=43.27 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 999 ALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEK 1049 (1507)
Q Consensus 999 ~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~ 1049 (1507)
.++..|..++-+++.+....-.+.+++...+....+....|..++.+|+++
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443344444444444443
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.12 E-value=9.8 Score=49.27 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000442 1031 EAESKIIELKTCMQRLEEKLSDIETEDQIL 1060 (1507)
Q Consensus 1031 ~lE~e~~~L~~~~~~Le~~l~~LE~E~~~L 1060 (1507)
++..++.+++..+..+++.+..-..+...|
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444444444444433333333
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.08 E-value=30 Score=46.24 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1011 TERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1011 le~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
+..+.+++-..-.+..+.+.++|.+...-+..+++...++..||.+.+...
T Consensus 1694 L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333333344445555665555556666666666777776665443
No 100
>PTZ00014 myosin-A; Provisional
Probab=94.04 E-value=0.14 Score=67.96 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Q 000442 833 KAAIVIQSQYRQYLGRYRYLQMKKAAIVVQCAWRGKVARGE 873 (1507)
Q Consensus 833 ~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~~~R~~~aRr~ 873 (1507)
..++.||++||+|++|+.|.+.+.+++.||++||+++++++
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999998875
No 101
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.02 E-value=10 Score=54.31 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=5.0
Q ss_pred hhhcccChh
Q 000442 306 MEVVGINSD 314 (1507)
Q Consensus 306 l~~lg~~~~ 314 (1507)
...||++.+
T Consensus 140 ~~~lGv~~~ 148 (1311)
T TIGR00606 140 ISHLGVSKA 148 (1311)
T ss_pred HHHhCCCHH
Confidence 345676653
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.95 E-value=0.038 Score=55.73 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.5
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999986
No 103
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.77 E-value=25 Score=44.35 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 891 KSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETK 941 (1507)
Q Consensus 891 ~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~ 941 (1507)
...+-..+.+|...|...+...++.|..-..|+..|+..++.-+.+.+++.
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555565555555555555555444455555555554444444433
No 104
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.77 E-value=16 Score=42.11 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1023 EERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1023 ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
+-+..++...++..+.+++++..|++-+..+|.+.+.++
T Consensus 255 e~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 255 EFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 333344445555556677777788888888777765554
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=28 Score=45.98 Aligned_cols=77 Identities=25% Similarity=0.212 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEE-------RLKEALEAESKIIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee-------~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
..+.++.++.+++.++.+..+++.+++..+.+...+.++ ...++.++..+.+.+..+-..|+..+..++++..
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555444444444444444444433333 2333444444555566666666667777777665
Q ss_pred HHHH
Q 000442 1059 ILRH 1062 (1507)
Q Consensus 1059 ~Lk~ 1062 (1507)
+.+.
T Consensus 492 ~~~~ 495 (1200)
T KOG0964|consen 492 RAEK 495 (1200)
T ss_pred HHHH
Confidence 5443
No 106
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.69 E-value=21 Score=43.22 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000442 399 ALAKIVYSRLFDWLV 413 (1507)
Q Consensus 399 alak~lY~~LF~wiV 413 (1507)
+|++.+|+-|=+|+-
T Consensus 51 Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 51 TLSEDIYSTLDNLLG 65 (527)
T ss_pred hhhHHHHhhhhhccC
Confidence 688888888777753
No 107
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.64 E-value=9.5 Score=48.93 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 992 AENEELKALVSSLEKKIDETERKFEETNKLS 1022 (1507)
Q Consensus 992 ~e~~~lq~~~~~le~~~~ele~~~~el~~~~ 1022 (1507)
.+..+++.++++...+.+.++-+++..++++
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 3344444444444444443433443333333
No 108
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.61 E-value=19 Score=42.45 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000442 1028 EALEAESKIIELKTCMQRLE 1047 (1507)
Q Consensus 1028 ~l~~lE~e~~~L~~~~~~Le 1047 (1507)
+++.+|.+..-++.++..|+
T Consensus 260 ~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 260 QLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433
No 109
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=17 Score=41.62 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 884 TGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLL 944 (1507)
Q Consensus 884 ~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l 944 (1507)
...+......+++++..|..++..-.....+++ .+..+++..++.++.++++.+..+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~----~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ----KEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554333332222 234444455555555555544443
No 110
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.53 E-value=9.4 Score=47.98 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1032 AESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1032 lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
-|..+++.+.++.+++++...|..|.+.|-
T Consensus 340 ~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 340 FEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555555555555553
No 111
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.2 Score=61.67 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=34.1
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 3455555677777777889999999999999999988877643
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.31 E-value=8.2 Score=48.50 Aligned_cols=19 Identities=11% Similarity=-0.158 Sum_probs=12.1
Q ss_pred CCCccchhhHHhHHHHHHH
Q 000442 1170 DSNDHLAYWLSNASTLLFL 1188 (1507)
Q Consensus 1170 ~d~~~lafWLSN~~~Ll~~ 1188 (1507)
.|++.--.||.-..+=|.+
T Consensus 313 selE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEY 331 (546)
T ss_pred ccccccChhHHHHHHHHHh
Confidence 5666666777666665554
No 113
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.31 E-value=19 Score=47.71 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHh
Q 000442 1048 EKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1048 ~~l~~LE~E~~~Lk~q 1063 (1507)
+++..||.|+++|+.-
T Consensus 190 kkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 190 KKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999999999864
No 114
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.18 E-value=34 Score=43.97 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 987 VNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEE 1024 (1507)
Q Consensus 987 ~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee 1024 (1507)
+.+++.++.+++..+-+.+.+.+-+.++.+++++....
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~ 362 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDM 362 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 33445555555544444444444444455555444433
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.00 E-value=8.1 Score=45.05 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 000442 1025 RLKEALEAESKIIE 1038 (1507)
Q Consensus 1025 ~~~~l~~lE~e~~~ 1038 (1507)
+..++.+++++..+
T Consensus 274 L~aEL~elqdkY~E 287 (306)
T PF04849_consen 274 LQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344333333
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.88 E-value=19 Score=46.50 Aligned_cols=15 Identities=60% Similarity=0.966 Sum_probs=9.2
Q ss_pred eeccceeeeccchhhhc
Q 000442 549 HYAGDVTYQTELFLDKN 565 (1507)
Q Consensus 549 H~ag~V~Y~~~~fl~kN 565 (1507)
+|.|++.|+. ||=-|
T Consensus 79 Gy~~digyq~--fLYp~ 93 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPN 93 (594)
T ss_pred CCCCCCcchh--hccCC
Confidence 5778888863 55333
No 117
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.86 E-value=16 Score=39.51 Aligned_cols=62 Identities=31% Similarity=0.294 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLS 1051 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~ 1051 (1507)
|..+...|+.++-..+.-+...+..+.+-....+++...+.+...-...|+.++.+|++.+.
T Consensus 128 L~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 128 LATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333333333333334433333433334444444445544443
No 118
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.78 E-value=0.07 Score=54.45 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999998764
No 119
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.60 E-value=25 Score=45.05 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000442 930 LQEMQQQFEETKTLLIKER 948 (1507)
Q Consensus 930 l~ele~~lee~~~~l~~e~ 948 (1507)
+..+..+|++.+..|+...
T Consensus 283 l~s~~~ELe~ak~~L~~~k 301 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAK 301 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 120
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.56 E-value=18 Score=39.17 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
|....+.+.+..+..+.++..+..++.+....-+-....+..+++..++|+..+.....+...+.++++
T Consensus 128 l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 128 LSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344444444445555555555554444433333344455555555555544444444444444433
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.54 E-value=23 Score=42.52 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERL 1026 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~ 1026 (1507)
.++.|+.++.++......++...+++..+.......++.+.
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44555566666666666666555555555555544444433
No 122
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.50 E-value=0.081 Score=57.42 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=23.2
Q ss_pred HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 143 MINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
+...+...+|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3466778999999999999999999999988754
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.35 E-value=1.5 Score=48.74 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=49.5
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 984 HVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 984 ~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
...+.++++++++++.++.++..+.+ ....+++...++..+.+.++++++.+|++++..++.++..++.+++.++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555554433 333344444445555566677888888888888888888888888777753
No 124
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.29 E-value=30 Score=41.15 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.9
Q ss_pred ccchHHHHH
Q 000442 670 RKMFHEFLS 678 (1507)
Q Consensus 670 r~~~~~F~~ 678 (1507)
+++..+|++
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 344444443
No 125
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.26 E-value=0.088 Score=53.33 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999997
No 126
>PRK01156 chromosome segregation protein; Provisional
Probab=92.17 E-value=34 Score=47.15 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1030 LEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1030 ~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.+...+++++...+..|+.++.+++.....++
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444
No 127
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.02 E-value=34 Score=41.15 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1039 LKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1039 L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
|.+++++|+++...|++.|+.|.-
T Consensus 408 leqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 408 LEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHhccccchhhhhhhhhhh
Confidence 444555555555555555555443
No 128
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.01 E-value=0.12 Score=46.71 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=21.0
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 129
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.87 E-value=0.17 Score=58.77 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999987764
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.87 E-value=31 Score=43.28 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKF 1015 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~ 1015 (1507)
.++.+..++.+++..+..+..+.+.+.++.
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 131
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.86 E-value=0.11 Score=56.35 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+.|+|+|.||||||+.++.|...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999887653
No 132
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.85 E-value=37 Score=45.14 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 921 QENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTE 956 (1507)
Q Consensus 921 ~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e 956 (1507)
.+...|+..++.|..++++....+.+.......+.+
T Consensus 336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe 371 (775)
T PF10174_consen 336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE 371 (775)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777666655554444444444
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.76 E-value=0.2 Score=51.34 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.8
Q ss_pred hcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 145 NEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999998875
No 134
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.69 E-value=7.4 Score=43.84 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 000442 993 ENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQAL 1065 (1507)
Q Consensus 993 e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~qal 1065 (1507)
+...|+.++..+-+..+.+++....+..++.-....+.-+|.+++..+..++.|+.++..++.|+++.++.+.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666667777777777777666666778889999999999999999999999999998887543
No 135
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.65 E-value=11 Score=45.98 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1032 AESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1032 lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
++.+..++++...+..+.+++-|+|+..|+.
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444555555555566666666666654
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.58 E-value=18 Score=37.25 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 997 LKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 997 lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
++.++..++..+..++.+...+...+... -..++.+...|+.++..++.++.+|...|..|-.
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~---e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEES---EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333332221 2245555556666666677777777766666544
No 137
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.51 E-value=13 Score=47.88 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=26.5
Q ss_pred hhHHHhhhccchhHHHHhhhccCCcccchHHHHHHHhhhccCccCCCcchHHHHHHHhhhcC
Q 000442 645 TNVLQQLRCGGVLEAIRISCAGYPTRKMFHEFLSRFRILAPKVFDGSCDEVTACKRLLQKVN 706 (1507)
Q Consensus 645 ~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~d~~~~~~~il~~~~ 706 (1507)
.-+..-+|-|.-+ +-.+...||+-.+.|+.|+ .|+ ..+.+..+.-|++.++
T Consensus 59 ~~msaRfr~~~~l-A~~~k~lGy~~digyq~fL------Yp~----e~~~R~ll~fLiekLP 109 (594)
T PF05667_consen 59 PGMSARFRVGTSL-AQACKELGYRGDIGYQTFL------YPN----EKDLRRLLMFLIEKLP 109 (594)
T ss_pred hHHHHHHHHHHHH-HHHHHHcCCCCCCcchhhc------cCC----hHHHHHHHHHHHHHCC
Confidence 3444444433333 2233556888888887664 333 1344555555555553
No 138
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.47 E-value=37 Score=40.51 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=16.4
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000442 983 DHVMVNKLTAENEELKALVSSLEKKIDE 1010 (1507)
Q Consensus 983 ~~~~~~~L~~e~~~lq~~~~~le~~~~e 1010 (1507)
....++.|+.|++.++..+...+++..+
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666776666666655554443
No 139
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=28 Score=45.91 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=10.0
Q ss_pred CCCCCHHHHHHHHhc
Q 000442 1414 CPVLSVQQLYRVCTL 1428 (1507)
Q Consensus 1414 C~~Ls~~Ql~kiL~~ 1428 (1507)
.+..++-||.+-|..
T Consensus 946 y~~~~~~el~kkL~~ 960 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLHR 960 (1200)
T ss_pred hccCCHHHHHHHHHH
Confidence 577777777666543
No 140
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.33 E-value=9.2 Score=42.05 Aligned_cols=57 Identities=28% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000442 1001 VSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETED 1057 (1507)
Q Consensus 1001 ~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~ 1057 (1507)
+..++...+++.+++.++.....+...+...+.....++++....+.+.+.++++-.
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333333444444444555555555555555554443
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.20 E-value=39 Score=40.23 Aligned_cols=12 Identities=0% Similarity=0.108 Sum_probs=5.5
Q ss_pred HHHHHHHhhhhh
Q 000442 795 RMCLARKDYHKL 806 (1507)
Q Consensus 795 R~~~~Rr~~~~l 806 (1507)
-+|+.|-+++..
T Consensus 14 a~YIekVr~LE~ 25 (312)
T PF00038_consen 14 ASYIEKVRFLEQ 25 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555544433
No 142
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.13 E-value=56 Score=41.95 Aligned_cols=7 Identities=57% Similarity=0.620 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000442 898 VEELTWR 904 (1507)
Q Consensus 898 ~~el~~r 904 (1507)
+.+|...
T Consensus 174 ve~L~~E 180 (522)
T PF05701_consen 174 VEELSKE 180 (522)
T ss_pred HHHHHHH
Confidence 3333333
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.07 E-value=28 Score=38.41 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000442 987 VNKLTAENEELKALVSSLEKKIDETERKFEETNKLSE----ERLKEALEAESKIIELKTCMQRLEEKLSD 1052 (1507)
Q Consensus 987 ~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~e----e~~~~l~~lE~e~~~L~~~~~~Le~~l~~ 1052 (1507)
.++|..++..++..+...+.++..++..+.-...... ....+..++..++..+..++..|+..+.+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444332221 12222334444444455555555444443
No 144
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.05 E-value=0.28 Score=50.44 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.....|+++|++|||||+.+|.+++.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999998773
No 145
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.04 E-value=0.13 Score=59.78 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567888999999999999999999884
No 146
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.87 E-value=26 Score=39.74 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=19.6
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 984 HVMVNKLTAENEELKALVSSLEKKIDETERKFEETN 1019 (1507)
Q Consensus 984 ~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~ 1019 (1507)
...+.-|+.++...+..++.++.++...+.+++...
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555665555555555555555555555444
No 147
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.85 E-value=39 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred hccCCCCCHHHHH-------HHHhcCCCCCCC
Q 000442 1411 NDLCPVLSVQQLY-------RVCTLYWDDDYN 1435 (1507)
Q Consensus 1411 ~~~C~~Ls~~Ql~-------kiL~~Y~~d~~e 1435 (1507)
.+.|.+|-..+|. +|-+.|.+.+++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 3677777777774 455666665544
No 148
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.81 E-value=0.37 Score=54.76 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.4
Q ss_pred hcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcC
Q 000442 145 NEGMSQSILVSGESGAGKTESTKMLMQYLAYMGG 178 (1507)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1507)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4477889999999999999999999999976544
No 149
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.77 E-value=0.19 Score=49.58 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.8
Q ss_pred CceEEEEeCCCCCCchhHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 150
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.76 E-value=0.19 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
...|+|.|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 689999999999999999877764
No 151
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.73 E-value=32 Score=38.39 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 000442 1044 QRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1044 ~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
+.|-+.+..|.+|...|++.
T Consensus 160 e~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888777764
No 152
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.69 E-value=0.2 Score=55.89 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 153
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.66 E-value=0.17 Score=54.46 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..-|||||.||+|||+..|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999999877
No 154
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.65 E-value=24 Score=46.79 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 1024 ERLKEALEAESKIIELKTCMQRLEE 1048 (1507)
Q Consensus 1024 e~~~~l~~lE~e~~~L~~~~~~Le~ 1048 (1507)
++.+.+...+.+++.|+..++.|++
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 155
>PRK06696 uridine kinase; Validated
Probab=90.64 E-value=0.29 Score=55.33 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.9
Q ss_pred hcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 145 NEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
..+..--|.|+|.||||||+.++.|.+.|..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999854
No 156
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.56 E-value=23 Score=42.18 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 000442 956 EALLIMERE 964 (1507)
Q Consensus 956 e~~~~le~e 964 (1507)
..+++|+.|
T Consensus 208 KrmdkLe~e 216 (552)
T KOG2129|consen 208 KRMDKLEQE 216 (552)
T ss_pred HHHHHHHHH
Confidence 344455555
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.54 E-value=9.5 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=15.2
Q ss_pred cCCCCeEEEEecCCCCCCCCC
Q 000442 621 SATEPHYIRCVKPNNVLKPSI 641 (1507)
Q Consensus 621 ~~t~~hfIrCIkPN~~~~~~~ 641 (1507)
..|..+||.|=+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977665543
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.48 E-value=0.17 Score=51.53 Aligned_cols=23 Identities=48% Similarity=0.787 Sum_probs=21.7
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999984
No 159
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.48 E-value=0.18 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=22.5
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988753
No 160
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.39 E-value=0.27 Score=58.34 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=27.7
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
...+.+.+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455555554 5999999999999999999998853
No 161
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.38 E-value=0.18 Score=55.99 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=23.5
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998875
No 162
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.37 E-value=33 Score=41.61 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKF 1015 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~ 1015 (1507)
.++.+..|.++|..+++...-+.+++.+..
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334444444444444444444444444433
No 163
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.28 E-value=0.27 Score=51.95 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=25.6
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998764
No 164
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.26 E-value=0.19 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988877
No 165
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.25 E-value=46 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1032 AESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1032 lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
.-+-....+.+++++...+..||.|+..++.
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566666666677777777766664
No 166
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.25 E-value=0.3 Score=56.68 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=26.5
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+..+.... .-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 44444322 34799999999999999999999885
No 167
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=72 Score=41.60 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
+.++...++..++...+...+.......++...++...++.+++..+.++..+++.+......+++|+++|+..
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555666666666666666666677777777777777777777777888888887753
No 168
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=58 Score=40.33 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHhHHHHHHHHHH
Q 000442 1384 DELKHTRQAVGFL 1396 (1507)
Q Consensus 1384 ~~L~~l~Qa~~lL 1396 (1507)
+++.+++--+..|
T Consensus 655 etm~KlRnELk~L 667 (772)
T KOG0999|consen 655 ETMDKLRNELKAL 667 (772)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 169
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.95 E-value=0.19 Score=55.42 Aligned_cols=26 Identities=46% Similarity=0.562 Sum_probs=23.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 170
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=41 Score=41.66 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 896 KEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLL 944 (1507)
Q Consensus 896 ~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l 944 (1507)
..++.|...-...+++..+.-+.-.++.+.|.+++..++..+.+.+.++
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl 361 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSL 361 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333332333222223334556666666666665555444443
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.82 E-value=36 Score=37.60 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 994 NEELKALVSSLEKKIDETERKFEETNKLS 1022 (1507)
Q Consensus 994 ~~~lq~~~~~le~~~~ele~~~~el~~~~ 1022 (1507)
.++|...++.++.++.+.++++..++...
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 172
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.69 E-value=0.47 Score=53.48 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 136 ADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+-.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455544667889999999999999999999988753
No 173
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=89.66 E-value=3.8 Score=52.18 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=86.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCccccchhhHHHhchHHHHHHHhhccc
Q 000442 1297 PKSSPWNSIIDIVNGLLRSLKENFVPRVLIQRIFTQIFSYINVQLFNSLLLRRECCTFSNGEYVKQGLAELELWCGEAKE 1376 (1507)
Q Consensus 1297 ~~~~~~~~il~~L~~~l~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1376 (1507)
+++++....+..|...+..|+.. +++.....+...+..-|+..+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~--- 426 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ--- 426 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh---
Confidence 34556788999999999999999 99999999999999999999999999976 56777778888777555444433
Q ss_pred cccCChHHHhHHHHHHHHHHhccCCCccCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000442 1377 EYAGSSWDELKHTRQAVGFLVIHQKTRISY--------------DEITNDL-CPVLSVQQLYRVCT 1427 (1507)
Q Consensus 1377 ~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Ql~kiL~ 1427 (1507)
+....-..+..|.+++.+|-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 -~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 -YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred -hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 33444578999999999999976554322 1222111 26788888888775
No 174
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.62 E-value=81 Score=42.25 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHH-HHHhcCCCHHHHHH
Q 000442 1301 PWNSIIDIVNGLLR-SLKENFVPRVLIQR 1328 (1507)
Q Consensus 1301 ~~~~il~~L~~~l~-~L~~~~v~~~l~~Q 1328 (1507)
+++.+-+-+..=.. .+...+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 44555544444444 56677777775554
No 175
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.60 E-value=47 Score=38.66 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQIL 1060 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~L 1060 (1507)
.+.+|..+......++..+-.+.+++.++..++.....+....+.++..+...++..+.++...+..|.......
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~ 254 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAA 254 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555666666666555555555555565666666666666666666555554433
No 176
>PTZ00301 uridine kinase; Provisional
Probab=89.55 E-value=0.24 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|-|+|.||||||+.++.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999998887764
No 177
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.52 E-value=0.2 Score=56.11 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=16.4
Q ss_pred EEEEeCCCCCCchhHHHHH
Q 000442 151 SILVSGESGAGKTESTKML 169 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~ 169 (1507)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 178
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.48 E-value=0.29 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=23.6
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.+..-|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557788999999999999998887664
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.46 E-value=29 Score=44.25 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=14.6
Q ss_pred CCccccchhhHHHhchHHHHHHHhhccc
Q 000442 1349 RECCTFSNGEYVKQGLAELELWCGEAKE 1376 (1507)
Q Consensus 1349 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1376 (1507)
++..-||+ .++-.|+.+.|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 46677888 456679988875
No 180
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.46 E-value=50 Score=38.73 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1040 KTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1040 ~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
+..++.|.+++..|+.+...|+..
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777653
No 181
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.44 E-value=39 Score=37.55 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000442 923 NAKLKSALQEMQQQFEETK 941 (1507)
Q Consensus 923 ~~kL~~~l~ele~~lee~~ 941 (1507)
+.+|..-+...+.+++++.
T Consensus 57 N~~L~epL~~a~~e~~eL~ 75 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELR 75 (201)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 182
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.42 E-value=45 Score=38.23 Aligned_cols=194 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 000442 871 RGELRKLKMAAKETGALQAAKSKLEKEVEELTWRLQLE----------------------KRMRADLEEAKTQENAKLKS 928 (1507)
Q Consensus 871 Rr~~~~Lk~ea~~~~~l~~~~~~le~k~~el~~rl~~e----------------------~r~~~~le~~~~~e~~kL~~ 928 (1507)
|..-..+..-....+.|.+.+..|...+.+....-... ...+.+++.....-+++..+
T Consensus 2 ~~rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~ 81 (258)
T PF15397_consen 2 RNRRTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEES 81 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccccchhhHhhhH-HHHHHHHHHHHHHHH
Q 000442 929 ALQEMQQQFEETKTLLIKEREAAKKTTEALLI---MEREAAEKEAVQVPVIREVPVIDHVMVNK-LTAENEELKALVSSL 1004 (1507)
Q Consensus 929 ~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~---le~e~~~~~~~~~~~~~e~~~~~~~~~~~-L~~e~~~lq~~~~~l 1004 (1507)
++..|+.+++++++.+....++..-+..-.+. +..-.+..+..+++.+++.+..+.....+ ...++..+......-
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k 161 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEK 161 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000442 1005 EKKI--DETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQA 1064 (1507)
Q Consensus 1005 e~~~--~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~qa 1064 (1507)
++++ .-..+-+.......-........+.+++..-...++.|++++..|+.|.+.|+.++
T Consensus 162 ~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 162 KEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 183
>PRK08233 hypothetical protein; Provisional
Probab=89.27 E-value=0.22 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 184
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.27 E-value=0.27 Score=53.30 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.+...|+++|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999999863
No 185
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.25 E-value=82 Score=40.97 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhccccccccc---cchhhHhhhHHHHHH
Q 000442 924 AKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMEREAA------EKEAVQVPVIREV---PVIDHVMVNKLTAEN 994 (1507)
Q Consensus 924 ~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~e~~------~~~~~~~~~~~e~---~~~~~~~~~~L~~e~ 994 (1507)
......++.++.+++.+-..++.+..+.+........+..... ..+..++..+.+. ...+...+..+..++
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL 357 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence 3445555666666666666666665555444433222222111 1111111111111 001233444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000442 995 EELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQI 1059 (1507)
Q Consensus 995 ~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~ 1059 (1507)
+.++..+..+...+.+......+++...++..+++..++++...+...+..|+..-.+.++.+..
T Consensus 358 ~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444555555555555555555555555555555555444333333333
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.22 E-value=56 Score=40.45 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 993 ENEELKALVSSLEKKIDETERKFEET 1018 (1507)
Q Consensus 993 e~~~lq~~~~~le~~~~ele~~~~el 1018 (1507)
+...++..+..++.++.+++..+.++
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443333
No 187
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.18 E-value=0.77 Score=56.40 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=32.9
Q ss_pred hhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 132 PFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 44555566666777788999999999999999998888763
No 188
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.15 E-value=0.25 Score=53.05 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998866
No 189
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.07 E-value=90 Score=41.18 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHcCCCC
Q 000442 609 FKQQLQALLETLSATEP 625 (1507)
Q Consensus 609 f~~~l~~L~~~l~~t~~ 625 (1507)
|-.-+..+|-.|.+|=|
T Consensus 201 lY~y~vkmlfkLHs~vp 217 (980)
T KOG0980|consen 201 LYDYLVKMLFKLHSQVP 217 (980)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33444555555655433
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.04 E-value=0.25 Score=50.09 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877643
No 191
>PRK07261 topology modulation protein; Provisional
Probab=89.04 E-value=0.27 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999986654
No 192
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.93 E-value=0.29 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 193
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.87 E-value=0.29 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 194
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.79 E-value=0.27 Score=56.65 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=16.9
Q ss_pred eEEEEeCCCCCCchhHHHHH
Q 000442 150 QSILVSGESGAGKTESTKML 169 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1507)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999886654
No 195
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=58 Score=42.35 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=18.7
Q ss_pred ceeeeccchhhhccCCCcHHHHHHHHhc
Q 000442 553 DVTYQTELFLDKNKDYVVPEHQAVLSAS 580 (1507)
Q Consensus 553 ~V~Y~~~~fl~kN~d~~~~~~~~ll~~S 580 (1507)
.|-|--..|+-+|-|--..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4778888888888776555455555544
No 196
>PRK06762 hypothetical protein; Provisional
Probab=88.77 E-value=0.34 Score=51.86 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999988
No 197
>PRK06547 hypothetical protein; Provisional
Probab=88.70 E-value=0.54 Score=50.84 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.1
Q ss_pred hcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 145 NEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..+...-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677889999999999999999988764
No 198
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.68 E-value=0.29 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999998875
No 199
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.51 E-value=63 Score=41.97 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000442 922 ENAKLKSALQEMQQQFEETK 941 (1507)
Q Consensus 922 e~~kL~~~l~ele~~lee~~ 941 (1507)
|...|++...-|+.++.|..
T Consensus 428 El~sLqSlN~~Lq~ql~es~ 447 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESL 447 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555433
No 200
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.46 E-value=0.36 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887764
No 201
>PRK08118 topology modulation protein; Reviewed
Probab=88.40 E-value=0.35 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+-|+|.|.+|||||+.+|.|-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988763
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.29 E-value=33 Score=42.19 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
.++...+++..+++++.+|..++..+++++..+..+.+++..-+.......++++.+..+++++-++.....+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~ 292 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLH 292 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666667777777777777777776666666666666666666677777777766655544443
No 203
>PF05729 NACHT: NACHT domain
Probab=88.07 E-value=0.41 Score=50.65 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999999887643
No 204
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.06 E-value=0.35 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999998754
No 205
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.02 E-value=0.32 Score=53.34 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.--|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34569999999999999999998865
No 206
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.98 E-value=0.33 Score=53.26 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888763
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.92 E-value=0.61 Score=56.04 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 117 MEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 117 ~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
...|+-..+.++-.|--. -+........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~--~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEV--VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHH--HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345554444444333222 22233344455545799999999999999999999885
No 208
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.89 E-value=0.42 Score=51.30 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.9
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998887
No 209
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.77 E-value=97 Score=40.01 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=2.5
Q ss_pred HHHHHH
Q 000442 838 IQSQYR 843 (1507)
Q Consensus 838 IQ~~~R 843 (1507)
+|..||
T Consensus 72 lqE~rr 77 (739)
T PF07111_consen 72 LQELRR 77 (739)
T ss_pred HHHHHH
Confidence 344443
No 210
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.69 E-value=1.2e+02 Score=41.00 Aligned_cols=50 Identities=24% Similarity=0.237 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 987 VNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKI 1036 (1507)
Q Consensus 987 ~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~ 1036 (1507)
..+++.....++..+..+......+...+.+++...+++...+..++...
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~ 453 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLV 453 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 33444444444444444444444444444444444444333333333333
No 211
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.63 E-value=0.32 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999876
No 212
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.56 E-value=0.35 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887764
No 213
>PRK01156 chromosome segregation protein; Provisional
Probab=87.55 E-value=94 Score=42.90 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.0
Q ss_pred EEEEeCCCCCCchhHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~ 170 (1507)
..+|+|++|||||...-.|.
T Consensus 25 i~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 25 INIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999998876555
No 214
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.53 E-value=0.44 Score=51.50 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=22.8
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1507)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 215
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.51 E-value=4.2 Score=44.96 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1003 SLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1003 ~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.++..+..++.++..+.....+..+.+..+..++..|+-+...+++++..|+.||..|-
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444445555555556666666666666666553
No 216
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.46 E-value=0.56 Score=55.95 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=35.8
Q ss_pred HHHhhcCCCCCCCCChhHhhHHHHHHHHhcC-CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 117 MEQYKGASLGELSPHPFAIADSAYRLMINEG-MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 117 ~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.|+=+...++-.|-= ...........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~--~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAA--DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHH--HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35666555565533331 122344444444 46778889999999999999998876
No 217
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.40 E-value=0.33 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.|+|.|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999886543
No 218
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.36 E-value=0.41 Score=56.53 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
...|+|+|..|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998864
No 219
>PF12846 AAA_10: AAA-like domain
Probab=87.29 E-value=0.44 Score=55.96 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=25.7
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999888765
No 220
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=87.27 E-value=1.9 Score=53.25 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=34.9
Q ss_pred hhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 132 PFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444455577888778899999999999999999999988764
No 221
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=87.25 E-value=0.97 Score=52.97 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=25.6
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.+.+--|-|+|.||||||+.++.+...+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456778899999999999999988877643
No 222
>PRK06315 type III secretion system ATPase; Provisional
Probab=87.21 E-value=1.2 Score=55.15 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.7
Q ss_pred HhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 134 AIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...-.|...+..-++.|.+.|.|+||+|||+..+.|+.+.
T Consensus 149 ~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 149 STGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred cceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 3344455555666789999999999999999999888766
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.15 E-value=0.8 Score=52.24 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 136 ADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445555555556679999999999999999988887764
No 224
>PRK09099 type III secretion system ATPase; Provisional
Probab=87.13 E-value=1.4 Score=54.56 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=31.3
Q ss_pred hHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 133 FAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+...-.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 147 l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 147 LPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred cCCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444456666666789999999999999999987776643
No 225
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.12 E-value=0.4 Score=57.96 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=26.8
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 444443 2357899999999999999999998874
No 226
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.10 E-value=1.3e+02 Score=40.73 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=25.1
Q ss_pred eEEEEecCCCCCCCCCCCchh-HH----HhhhccchhHHHHhhhccCCcccchH
Q 000442 626 HYIRCVKPNNVLKPSIFENTN-VL----QQLRCGGVLEAIRISCAGYPTRKMFH 674 (1507)
Q Consensus 626 hfIrCIkPN~~~~~~~fd~~~-v~----~QLr~~gvle~iri~~~Gyp~r~~~~ 674 (1507)
||---|=||...+++..|.-. |+ .+||...+=+.|- |||.|.+-.
T Consensus 26 ~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy----g~~i~~~v~ 75 (1141)
T KOG0018|consen 26 RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY----GKPIRKPVT 75 (1141)
T ss_pred hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc----CCccCCchh
Confidence 444556666666666555422 32 2555555544433 788777765
No 227
>PF13245 AAA_19: Part of AAA domain
Probab=87.08 E-value=0.72 Score=42.70 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566788999999999888888888874
No 228
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.04 E-value=37 Score=34.42 Aligned_cols=7 Identities=14% Similarity=0.762 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000442 1009 DETERKF 1015 (1507)
Q Consensus 1009 ~ele~~~ 1015 (1507)
++++.+.
T Consensus 78 ~~l~~ry 84 (120)
T PF12325_consen 78 EELQQRY 84 (120)
T ss_pred HHHHHHH
Confidence 3333333
No 229
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.01 E-value=0.34 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|++.|.||||||+.++.+-+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998873
No 230
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.97 E-value=0.45 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999998888764
No 231
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.87 E-value=0.64 Score=50.30 Aligned_cols=29 Identities=31% Similarity=0.388 Sum_probs=25.8
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
+...|+|.|-+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999653
No 232
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.78 E-value=0.37 Score=57.19 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
--++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3467799999999999999999999763
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.71 E-value=6.7 Score=42.63 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000442 1029 ALEAESKIIELKTCMQRLEEKLSDIETE 1056 (1507)
Q Consensus 1029 l~~lE~e~~~L~~~~~~Le~~l~~LE~E 1056 (1507)
...+++..+.+..++.+|+.+..+|+..
T Consensus 179 ~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 179 NSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3333333333444444444444444433
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.57 E-value=80 Score=42.03 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=24.9
Q ss_pred CCCCeEEEeeccc--eeeeccchhhh-----ccCCCcHHHHHHHHhcCCccccCcCCC
Q 000442 541 SLTDFTICHYAGD--VTYQTELFLDK-----NKDYVVPEHQAVLSASGCPFVSGLFPP 591 (1507)
Q Consensus 541 ~~~~F~i~H~ag~--V~Y~~~~fl~k-----N~d~~~~~~~~ll~~S~~~~i~~lf~~ 591 (1507)
.+..|.+.|-+|- |.- .|+.+ +.+.-..+.+..+...+.+.+..++..
T Consensus 377 ~~~ryy~~H~~GvH~V~L---~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT 431 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL---PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCT 431 (717)
T ss_pred CCceEEEEecCccEEEEe---ccHHHHHHHhcccCCccchhhhhcccCCcceEEEecc
Confidence 4567899999995 443 36652 232222233333433444455555543
No 235
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.53 E-value=47 Score=38.52 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000442 891 KSKLEKEVEELTWRLQLEK 909 (1507)
Q Consensus 891 ~~~le~k~~el~~rl~~e~ 909 (1507)
-..||++.++|+++++-+.
T Consensus 141 t~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665443
No 236
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.49 E-value=0.67 Score=56.45 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=29.6
Q ss_pred HHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 140 YRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
++.....+.+.+|+|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344577889999999999999999999998864
No 237
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.49 E-value=0.99 Score=55.03 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=39.8
Q ss_pred HHHHhhcCCCCCCCCChhHhhHHHHHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 116 MMEQYKGASLGELSPHPFAIADSAYRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 116 ~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
..++|+=....++--|--.+. ..+.+... +-+++++++|+.|+|||+.++.+.+.+-
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 345676666666543332222 34455444 4689999999999999999999999885
No 238
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.48 E-value=78 Score=37.62 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 884 TGALQAAKSKLEKEVEELTWRLQLEKRMRADLE 916 (1507)
Q Consensus 884 ~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le 916 (1507)
...+......+..++.+++.++..+...+..++
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666665544444443
No 239
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=86.47 E-value=0.49 Score=52.54 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|-|+|-||||||+.++.|..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999998885
No 240
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.47 E-value=0.46 Score=57.48 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=25.6
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
...-|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 241
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.37 E-value=6.1 Score=34.95 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1013 RKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1013 ~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
.++..+-....-+.-++.++.++++.|..+..+++.....|+.+|+++++.
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444556666667777777777777777778888877764
No 242
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.35 E-value=0.52 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 243
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.34 E-value=0.66 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
..|+|+|+.|||||+..+.++.++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999888774
No 244
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.18 E-value=0.56 Score=49.18 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.7
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|.|||.+|||||+-++.+-.++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999999885
No 245
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=86.14 E-value=1e+02 Score=38.60 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=59.7
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 983 DHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 983 ~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+...+..++++++++.+.+....+.+++.+.....++...++..+.+...+++..+.+..+..|++.=.+-++...+++.
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~ 424 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKS 424 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888877778888888888888888888888788888888877655555555555554
No 246
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.13 E-value=1e+02 Score=40.75 Aligned_cols=13 Identities=15% Similarity=-0.146 Sum_probs=7.6
Q ss_pred chhhHHhHHHHHH
Q 000442 1175 LAYWLSNASTLLF 1187 (1507)
Q Consensus 1175 lafWLSN~~~Ll~ 1187 (1507)
..-|.+-...|-.
T Consensus 393 k~~~~~e~q~L~e 405 (717)
T PF09730_consen 393 KDRLESEVQNLKE 405 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 4567666655544
No 247
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=1.2e+02 Score=39.54 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
.+..++.+...++.....+.++...+...++...+...+....+..+..+.+.....+.+++..+.+++.+++..+.
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~ 601 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKF 601 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444555555555555555555555555555555443
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.05 E-value=0.48 Score=54.01 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.+..++-+-||||+|||++.|.|++-+--
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCC
Confidence 35667889999999999999999997753
No 249
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.01 E-value=0.56 Score=50.61 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
--|.|+|.||||||+..+.++..|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 367899999999999999999999754
No 250
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.90 E-value=0.41 Score=51.96 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999999865
No 251
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.89 E-value=48 Score=34.56 Aligned_cols=9 Identities=0% Similarity=0.468 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000442 929 ALQEMQQQF 937 (1507)
Q Consensus 929 ~l~ele~~l 937 (1507)
++..|+.++
T Consensus 25 ~v~~LEreL 33 (140)
T PF10473_consen 25 HVESLEREL 33 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 252
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.88 E-value=1 Score=58.92 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=26.5
Q ss_pred hcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 145 NEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+.+.++.|+|..|.|||.+++++++-|...
T Consensus 777 gsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 777 QSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34555667899999999999999999998643
No 253
>PRK06217 hypothetical protein; Validated
Probab=85.87 E-value=0.5 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.5
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1507)
-|+|+|-||||||+.++.+-+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999988763
No 254
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.84 E-value=80 Score=37.09 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 000442 1036 IIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 1036 ~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
.+.|...+..|..+...|+..++
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555543
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.76 E-value=34 Score=41.50 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=6.5
Q ss_pred HHHHhhhccCCccc
Q 000442 658 EAIRISCAGYPTRK 671 (1507)
Q Consensus 658 e~iri~~~Gyp~r~ 671 (1507)
.-|||-|-|-|.|+
T Consensus 103 ~~irivRd~~pnry 116 (493)
T KOG0804|consen 103 SDIRIVRDGMPNRY 116 (493)
T ss_pred heeEEeecCCCceE
Confidence 33444445555443
No 256
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.76 E-value=4.5 Score=48.10 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1031 EAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1031 ~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
....+..+.+.+.+.++.++......+++|++
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555555555555555555554
No 257
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.76 E-value=0.54 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999975
No 258
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.70 E-value=29 Score=39.27 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1028 EALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1028 ~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
.+..++.+.+..++...++.+++..|.++.+.++..
T Consensus 68 iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 68 IIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555443
No 259
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.67 E-value=85 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1037 IELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1037 ~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+.|-.++.-|++++..+++|..-+++
T Consensus 192 DaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 192 DALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777666554
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.59 E-value=0.62 Score=48.97 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=22.8
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
++|+|++|+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 261
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.58 E-value=0.25 Score=66.55 Aligned_cols=56 Identities=29% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 882 KETGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETK 941 (1507)
Q Consensus 882 ~~~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~ 941 (1507)
.....+.+....|+.++.+|...|+.++..++..+.. ...|...+++|..++++..
T Consensus 32 ~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~----r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 32 ALRAQLQKKIKELQARIEELEEELESERQARAKAEKQ----RRDLSEELEELKERLEEAG 87 (859)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 3345555666667777777777777777665555433 4455666666666665543
No 262
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.57 E-value=42 Score=43.47 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 000442 894 LEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMERE------AAE 967 (1507)
Q Consensus 894 le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~e------~~~ 967 (1507)
++.++.++..++......+..++ .......++++..+++.+-..+++|.+......+....+... ...
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~------l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~ 323 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLE------LDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNK 323 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHhccccccccccch---hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 968 KEAVQVPVIREVPVI---DHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQ 1044 (1507)
Q Consensus 968 ~~~~~~~~~~e~~~~---~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~ 1044 (1507)
.+..+++.+...=.. +......+.++++.+...+..+...+.+-..-...+....++..+.+...+++...+...+.
T Consensus 324 ~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~ 403 (560)
T PF06160_consen 324 ELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQ 403 (560)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHh
Q 000442 1045 RLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1045 ~Le~~l~~LE~E~~~Lk~q 1063 (1507)
.|++.=..-.+....++..
T Consensus 404 ~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 404 SLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 263
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=1e+02 Score=38.52 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 884 TGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMER 963 (1507)
Q Consensus 884 ~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~ 963 (1507)
++..+..+..|..+|..++..+.+....+.++++ +...|.+....++.++..++-.+++..++.-++..++.+-..
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke----hassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKE----HASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666665555444444444433 234455555566666666666665555555444443322111
Q ss_pred HHHHHHhccccccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 964 EAAEKEAVQVPVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKL 1021 (1507)
Q Consensus 964 e~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~ 1021 (1507)
-..+. .+ .....+.+..|+.+...++.+........+++-+-..+.+.+
T Consensus 409 ~~dda---r~------~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 409 IEDDA---RM------NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred hhHhh---hc------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10000 00 001244555566666666665555555555444444444433
No 264
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.44 E-value=0.51 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
--+++-|.||||||++.|+|-+-+-
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3578899999999999999987654
No 265
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.42 E-value=1.2e+02 Score=38.72 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHH
Q 000442 1024 ERLKEALEAESKIIELKTCMQRLEEKLS------DIETEDQILRH 1062 (1507)
Q Consensus 1024 e~~~~l~~lE~e~~~L~~~~~~Le~~l~------~LE~E~~~Lk~ 1062 (1507)
....++..++.+++.....++.|++++. ++..|+..|++
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 3344445555555544444444444333 44455555554
No 266
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.34 E-value=0.8 Score=50.74 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.3
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+...|.|+|.||||||+.++.+...|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3577899999999999999999999988654
No 267
>PRK12377 putative replication protein; Provisional
Probab=85.17 E-value=1 Score=51.63 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=32.8
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455555544344332 35799999999999999999999999853
No 268
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.14 E-value=0.52 Score=54.90 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.9
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5689999999999999999999987753
No 269
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.13 E-value=8.1 Score=42.96 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+...+..++.++.++++++++...... .+..+..+++...+...++|++++++|++++..++.+++.+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544444443322 2233344444455555555666666666666666666655544
No 270
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.11 E-value=0.59 Score=49.09 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+|+|.|.+|||||+.+|.+-.+|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998873
No 271
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.06 E-value=66 Score=38.04 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000442 988 NKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSD 1052 (1507)
Q Consensus 988 ~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~ 1052 (1507)
.+|..+...+.-+++-|++++.++++.+.++.++..+...++..+....+.++.++..|++++..
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777777777777777666655555555555555566666666655543
No 272
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=85.01 E-value=0.64 Score=47.17 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 556899999999999999999999977
No 273
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.99 E-value=0.47 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988774
No 274
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.82 E-value=1.2 Score=50.43 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+..++|.|++|+|||..++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999998877543
No 275
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.77 E-value=1.3e+02 Score=38.66 Aligned_cols=196 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 000442 867 GKVARGELRKLKMAAKETGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKT---QENAKLKSALQEMQQQFEETKTL 943 (1507)
Q Consensus 867 ~~~aRr~~~~Lk~ea~~~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~---~e~~kL~~~l~ele~~lee~~~~ 943 (1507)
..+....-...-...+.+..|......-++++.++...+..-++..+.+++... ...+......+.+..++++....
T Consensus 225 ~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~s 304 (786)
T PF05483_consen 225 EDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQS 304 (786)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhccccccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 944 LIKEREAAKKTTEALLIMERE---AAEKEAVQVPVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNK 1020 (1507)
Q Consensus 944 l~~e~~~~~~~~e~~~~le~e---~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~ 1020 (1507)
++......+.+...+...... .....+.++.............+.+++..+..|+..+..-..+..+.+..+.-+..
T Consensus 305 lq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~ 384 (786)
T PF05483_consen 305 LQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTM 384 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1021 LSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1021 ~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
++.....++.+..+..+.-+-++..|+..+.+-..-.+.-++
T Consensus 385 eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~ 426 (786)
T PF05483_consen 385 ELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQ 426 (786)
T ss_pred HHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 276
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.75 E-value=1.3e+02 Score=40.42 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=5.3
Q ss_pred hhhHHHHHHhh
Q 000442 1110 HENLDALLKCV 1120 (1507)
Q Consensus 1110 ~e~~~~L~~~l 1120 (1507)
.||.+.+.+.+
T Consensus 486 ~eD~~lf~~~i 496 (1072)
T KOG0979|consen 486 SEDYLLFVKKI 496 (1072)
T ss_pred hHHHHHHHHHh
Confidence 45555554443
No 277
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.74 E-value=0.67 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 278
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.73 E-value=93 Score=36.90 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 997 LKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 997 lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
++.+++-+-++.....-++..+-...++....+.....+..+|...+++|... |-.|+.+|+.
T Consensus 426 vqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnR---LaaEItrLRt 488 (593)
T KOG4807|consen 426 VQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNR---LAAEITRLRT 488 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH---HHHHHHHHHH
Confidence 33333333344444444444444444444444555555555565555555543 3455566654
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.73 E-value=0.97 Score=55.69 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.2
Q ss_pred HHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 142 LMINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.....+.+.+++|+|.+|+|||.+++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33445677899999999999999999999988543
No 280
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.69 E-value=10 Score=34.37 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSD 1052 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~ 1052 (1507)
|+.++..|+..++.+..++...+.....+..+.+.....+..+-.++.+|+.++..|++++..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666665555555555555566666666666555433
No 281
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=84.67 E-value=2.6 Score=36.31 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=41.8
Q ss_pred ccccCCEEEEeCCCCCeEeEEEEEEcC-CeEEEEeCC-CcEEEEecCCCCCCC
Q 000442 6 GLVVGSIVWTEDPEEAWIDGEVEEVND-EDIKIACTS-GKTVVAKASNVYPKD 56 (1507)
Q Consensus 6 ~~~~g~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~-g~~~~~~~~~~~~~~ 56 (1507)
.+.+|+.|=++..+..|-.|+|+++.+ +...|...| |....++.+++.+.+
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899998887678999999999977 778888766 998888887776553
No 282
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.67 E-value=1.7e+02 Score=40.92 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 000442 1040 KTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1040 ~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
-+.+.+|.+++.+..++...+.
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665543
No 283
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.66 E-value=6.2 Score=43.67 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000442 1011 TERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQA 1064 (1507)
Q Consensus 1011 le~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~qa 1064 (1507)
...+...++.+.++...+++.++++...++.+.+.+..+..+|-+|++.|+.+.
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333333344444444444555555555666666666666666666666666553
No 284
>PRK13764 ATPase; Provisional
Probab=84.59 E-value=0.92 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=24.0
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 285
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.58 E-value=0.75 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|-|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999998888854
No 286
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.56 E-value=0.52 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.8
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999987664
No 287
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.54 E-value=2.1e+02 Score=40.86 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.-+-|+|-.|||||+..+.|.=|.-
T Consensus 18 G~t~i~GTNG~GKTTlLRlip~FYG 42 (1201)
T PF12128_consen 18 GHTHICGTNGVGKTTLLRLIPFFYG 42 (1201)
T ss_pred CceeeecCCCCcHHHHHHHHHHhcC
Confidence 3456999999999999999887773
No 288
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.49 E-value=3.3 Score=51.48 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=34.8
Q ss_pred hhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 132 PFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
++.+.-.+...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 455666778888778899999999999999999888777654
No 289
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=83 Score=38.33 Aligned_cols=178 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 874 LRKLKMAAKETGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKEREAAKK 953 (1507)
Q Consensus 874 ~~~Lk~ea~~~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~ 953 (1507)
....+...-+...++....+++....+++ .+...+.+.-+...--..-.++|...+.....++.++.++.+.-+.-...
T Consensus 247 ~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~ 325 (521)
T KOG1937|consen 247 QAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQ 325 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHH-HHHHHHHHHh-ccccccccccchhhHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 000442 954 TTEALLI-MEREAAEKEA-VQVPVIREVPVIDHVMVNKLTAENEELKALVSSLEK--KIDETERKFEETNKLSEERLKEA 1029 (1507)
Q Consensus 954 ~~e~~~~-le~e~~~~~~-~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~--~~~ele~~~~el~~~~ee~~~~l 1029 (1507)
....+.. ++.+..+..+ ..+..++.......+.++.-+...+.|..+++.+-. ........+.+...-..+....+
T Consensus 326 kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 326 KKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 000442 1030 LEAESKIIELKTCMQRLEEKLSD 1052 (1507)
Q Consensus 1030 ~~lE~e~~~L~~~~~~Le~~l~~ 1052 (1507)
...-++..+|+.+.+.+.+++.+
T Consensus 406 ~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 406 VKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 290
>PLN03025 replication factor C subunit; Provisional
Probab=84.35 E-value=1.1 Score=53.58 Aligned_cols=56 Identities=27% Similarity=0.461 Sum_probs=39.8
Q ss_pred HHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 117 MEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 117 ~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.++|+=..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556655555554443222 2456666677667899999999999999999999874
No 291
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.19 E-value=38 Score=38.36 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 990 LTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEK 1049 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~ 1049 (1507)
|..|.....+++......+..++..+.+++.+.++....+..+.+++..|+.++++++.+
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555566666666666655555555555555566666666666554
No 292
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=84.18 E-value=2.2 Score=52.81 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=34.8
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
.++...-.|...|..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 150 ~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 150 EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456666677777877889999999999999999998877654
No 293
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=84.06 E-value=1.4 Score=47.10 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHhcC
Q 000442 134 AIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYMGG 178 (1507)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1507)
+|...+...| ...++-.|-++|-||||||+.+..+=+.|-..|-
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4444443333 3456789999999999999999999999987753
No 294
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.04 E-value=1.4e+02 Score=38.22 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 988 NKLTAENEELKALVSSLEKKIDETERKFEETNKL 1021 (1507)
Q Consensus 988 ~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~ 1021 (1507)
..+...+..++.++..++.+.+.+.+++++++.+
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554443
No 295
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.97 E-value=1.2e+02 Score=37.54 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 990 LTAENEELKALVSSLEKKIDETERKF 1015 (1507)
Q Consensus 990 L~~e~~~lq~~~~~le~~~~ele~~~ 1015 (1507)
++.++..++.++.+++.++++++..+
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 296
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=83.90 E-value=0.78 Score=49.89 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+|.|.||||||+-||.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999984
No 297
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.90 E-value=0.68 Score=48.59 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 298
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.83 E-value=0.81 Score=49.51 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999998876
No 299
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.81 E-value=0.82 Score=47.68 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 300
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.76 E-value=81 Score=40.50 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000442 897 EVEELTWRLQ 906 (1507)
Q Consensus 897 k~~el~~rl~ 906 (1507)
+...++.+++
T Consensus 113 kn~slqerLe 122 (916)
T KOG0249|consen 113 KNRSLQERLE 122 (916)
T ss_pred hhhhhhHHHH
Confidence 3333333333
No 301
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=83.75 E-value=1.5e+02 Score=38.45 Aligned_cols=13 Identities=38% Similarity=0.435 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 000442 1037 IELKTCMQRLEEK 1049 (1507)
Q Consensus 1037 ~~L~~~~~~Le~~ 1049 (1507)
..|...++.|+++
T Consensus 245 ~~L~~tVq~L~ed 257 (739)
T PF07111_consen 245 EELLETVQHLQED 257 (739)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 302
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.74 E-value=0.73 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+---+.++|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34567899999999999999998633
No 303
>PRK04182 cytidylate kinase; Provisional
Probab=83.63 E-value=0.71 Score=49.86 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 304
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.62 E-value=1.9e+02 Score=41.85 Aligned_cols=10 Identities=10% Similarity=-0.157 Sum_probs=3.6
Q ss_pred HHHhccccch
Q 000442 1140 CLLHWGSFEA 1149 (1507)
Q Consensus 1140 clr~~~~~~~ 1149 (1507)
.+.+.+.+.+
T Consensus 607 l~df~e~v~~ 616 (1353)
T TIGR02680 607 LVDFADDVPA 616 (1353)
T ss_pred heecCCCCCH
Confidence 3333333333
No 305
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.59 E-value=0.61 Score=58.41 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.3
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+..=|-||||||||+++..||.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45677899999999999999999999643
No 306
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.57 E-value=1.1 Score=39.64 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.4
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..+|+|++|||||+..-.+.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999998876655433
No 307
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.43 E-value=7.7 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1024 ERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1024 e~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
-+.-++.++++++..|..+.+.+...-..|+.+|++|++.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555666666666653
No 308
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.39 E-value=11 Score=47.18 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 986 MVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEER---LKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 986 ~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~---~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
.++.|+.++..|+..+.++++.+.+++.+++.+..+.... ..++..++.++..|+..+.+-...+.+|+.++..+++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666665543321 1234455566666666666666666666666666553
No 309
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.38 E-value=2.5e+02 Score=40.79 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=9.8
Q ss_pred HHHHhhhHHHHHHHHHHhHH
Q 000442 849 YRYLQMKKAAIVVQCAWRGK 868 (1507)
Q Consensus 849 ~~~~~~~~a~i~iQ~~~R~~ 868 (1507)
..+..++..+..|+.-.+..
T Consensus 661 e~~~~l~~ev~~ir~~l~k~ 680 (1822)
T KOG4674|consen 661 EDFDSLQKEVTAIRSQLEKL 680 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34445555555555444433
No 310
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.37 E-value=1.2 Score=55.32 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=38.5
Q ss_pred HHhhcCCCCCC--CCChhHhhHHHHHHHHhcCC-ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 118 EQYKGASLGEL--SPHPFAIADSAYRLMINEGM-SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 118 ~~y~~~~~~~l--~PHifavA~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+.|+=+.+.++ ..|+.+ ..+.+...++ .+++|++|+.|.|||++++.+.++|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~----~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIG----ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45665555544 355544 3445455444 788999999999999999999999864
No 311
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=83.35 E-value=0.89 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999998774
No 312
>PRK04040 adenylate kinase; Provisional
Probab=83.34 E-value=0.81 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999883
No 313
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.31 E-value=1.2 Score=56.88 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=25.8
Q ss_pred HhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 144 INEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.....++.|+|.||+|+|||..++++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999998764
No 314
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.28 E-value=0.77 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.2
Q ss_pred ceEEEEeCCCCCCchhHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
...|+|.|+||+|||+++=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887776
No 315
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.26 E-value=94 Score=41.46 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=13.8
Q ss_pred HHHhhhhhcccChhhHHH
Q 000442 301 KTRKAMEVVGINSDEQDA 318 (1507)
Q Consensus 301 ~~~~al~~lg~~~~~~~~ 318 (1507)
.++.||..|-+-.+|+..
T Consensus 53 aLkec~~qlr~~ree~eq 70 (769)
T PF05911_consen 53 ALKECMRQLRQVREEQEQ 70 (769)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 467788888887777776
No 316
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.20 E-value=14 Score=40.73 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 989 KLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRL 1046 (1507)
Q Consensus 989 ~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~L 1046 (1507)
.++.++..++..+..++..+.+..+.++.+..+...+.-+...+|+++..++.+...|
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333333333333333333333333333333333444444444443333
No 317
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.18 E-value=1.5e+02 Score=38.02 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhHH
Q 000442 875 RKLKMAAKETGAL 887 (1507)
Q Consensus 875 ~~Lk~ea~~~~~l 887 (1507)
++||+..++...+
T Consensus 477 kKLRAk~ke~etl 489 (961)
T KOG4673|consen 477 KKLRAKIKEAETL 489 (961)
T ss_pred HHHHHHhhhhhHH
Confidence 4445444444433
No 318
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.17 E-value=1 Score=56.86 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=26.4
Q ss_pred HHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 139 AYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34445432 334789999999999999998888774
No 319
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.09 E-value=68 Score=37.73 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=4.7
Q ss_pred hHHHHHHHHHhh
Q 000442 1181 NASTLLFLLQCS 1192 (1507)
Q Consensus 1181 N~~~Ll~~lq~~ 1192 (1507)
.+..|++++-.+
T Consensus 203 yvahlv~lls~y 214 (302)
T PF10186_consen 203 YVAHLVSLLSRY 214 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 320
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.04 E-value=0.88 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 321
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=83.02 E-value=1.3 Score=54.69 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHH
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
..+..-++.|.+.|.|.||+|||+..+.+.+
T Consensus 157 D~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 157 DIFTPLCAGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred eeeceecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3344456789999999999999998776654
No 322
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=82.99 E-value=1.4 Score=52.42 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 118 EQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 118 ~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+.|+=..+.++..|-- +-+..+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444344444444432 233455555555555699999999999999999988874
No 323
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.98 E-value=1.9 Score=44.94 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668999999999999999999999874
No 324
>PRK15453 phosphoribulokinase; Provisional
Probab=82.89 E-value=0.93 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.=-|.|+|-||||||+.++.+-+-|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999887776553
No 325
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.69 E-value=0.92 Score=50.86 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45678889999999999999999887653
No 326
>PHA00729 NTP-binding motif containing protein
Probab=82.68 E-value=1.6 Score=49.05 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.8
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
++.-..|+|+|.+|+|||+.+..|.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998765
No 327
>PTZ00121 MAEBL; Provisional
Probab=82.58 E-value=2.3e+02 Score=39.75 Aligned_cols=231 Identities=17% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000442 818 RGMAAHNDLRLMKQTKAAIVIQSQYRQYLGRYRYLQMKKAAIVVQCAWRGKVARGELRKLKMAAKETGALQAAKSKLEKE 897 (1507)
Q Consensus 818 Rg~~aRk~~~~~r~~~aA~~IQ~~~R~~~~R~~~~~~~~a~i~iQ~~~R~~~aRr~~~~Lk~ea~~~~~l~~~~~~le~k 897 (1507)
|.-.+|+.-...++..-|..+-..-|.-.+|+.-...++-...--...|.--+.++.+..+.+..+...-......-.++
T Consensus 1110 r~ee~r~~ee~~~r~e~arr~eeARrae~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr 1189 (2084)
T PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRK 1189 (2084)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccc
Q 000442 898 VEELTWRLQLEK-RMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKE---REAAKKTTEALLIMEREAAEKEAVQV 973 (1507)
Q Consensus 898 ~~el~~rl~~e~-r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e---~~~~~~~~e~~~~le~e~~~~~~~~~ 973 (1507)
++++....+..+ ....++|+.+..+.++........+......+++...+ +.+..+..++..+.+...+.......
T Consensus 1190 ~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eear~a~~A~r~ 1269 (2084)
T PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269 (2084)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 974 PVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEK 1049 (1507)
Q Consensus 974 ~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~ 1049 (1507)
.+.+....-..+....++.+.........+..++.++.+++.++.+.. ++..++......+-+.+......-+..
T Consensus 1270 aa~k~Ee~RrAee~~k~Ee~r~a~~~kk~ee~kkaee~~kk~eea~kA-ee~~kkae~~~kka~~~~k~~e~~kk~ 1344 (2084)
T PTZ00121 1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA-DEAKKKAEEAKKKADAAKKKAEEAKKA 1344 (2084)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH-HHHHHhHHHHHhhhHHHHhhHHHHHhH
No 328
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.46 E-value=33 Score=43.00 Aligned_cols=23 Identities=13% Similarity=0.019 Sum_probs=17.0
Q ss_pred cchhhHHHhchHHHHHHHhhccc
Q 000442 1354 FSNGEYVKQGLAELELWCGEAKE 1376 (1507)
Q Consensus 1354 ~s~G~qIr~nls~Le~W~~~~~~ 1376 (1507)
-+.-+-+|.-=+.+.+|+++.++
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhccH
Confidence 34455667777899999999764
No 329
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.44 E-value=54 Score=38.56 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhHHHH
Q 000442 1041 TCMQRLEEKLSDIETE 1056 (1507)
Q Consensus 1041 ~~~~~Le~~l~~LE~E 1056 (1507)
..+...+..+..++..
T Consensus 126 ~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 126 NELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 330
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=82.42 E-value=1.5e+02 Score=37.41 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 1031 EAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 1031 ~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.-|+++..+.+.+..|.+++....++++.||
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666666666666666665
No 331
>PRK06761 hypothetical protein; Provisional
Probab=82.33 E-value=0.85 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.7
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 332
>PRK10869 recombination and repair protein; Provisional
Probab=82.33 E-value=1.7e+02 Score=38.02 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 000442 1036 IIELKTCMQRLEEKLSDIETEDQ 1058 (1507)
Q Consensus 1036 ~~~L~~~~~~Le~~l~~LE~E~~ 1058 (1507)
+..|+.++..+++++..+-.++.
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.31 E-value=0.96 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987753
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.29 E-value=1.2 Score=47.96 Aligned_cols=27 Identities=41% Similarity=0.583 Sum_probs=24.0
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999988654
No 335
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=82.16 E-value=0.87 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.2
Q ss_pred ceEEEEeCCCCCCchhHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKML 169 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~ 169 (1507)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 336
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.16 E-value=1.1 Score=49.55 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=30.1
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccc-----hhhhccc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNP-----VLEAFGN 203 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snp-----ilEaFGN 203 (1507)
|.|+|.+|||||+.++++-.+ |... -+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~~-i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAFG-ISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCEE-EecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 2211 112345555666543 6677776
No 337
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.14 E-value=50 Score=40.08 Aligned_cols=8 Identities=13% Similarity=0.696 Sum_probs=4.1
Q ss_pred CCCCCCch
Q 000442 638 KPSIFENT 645 (1507)
Q Consensus 638 ~~~~fd~~ 645 (1507)
.|..||.+
T Consensus 62 ~p~e~DDP 69 (359)
T PF10498_consen 62 QPQEYDDP 69 (359)
T ss_pred CCcccCCH
Confidence 45555544
No 338
>PRK07667 uridine kinase; Provisional
Probab=82.13 E-value=1.6 Score=48.18 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 339
>PRK13342 recombination factor protein RarA; Reviewed
Probab=81.99 E-value=1.6 Score=54.26 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=33.2
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
|+... ....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 19 ~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 19 HLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44332 3556777777888899999999999999999987755
No 340
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.94 E-value=1.3 Score=44.59 Aligned_cols=26 Identities=42% Similarity=0.733 Sum_probs=23.9
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 341
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=81.93 E-value=1 Score=55.64 Aligned_cols=66 Identities=30% Similarity=0.495 Sum_probs=41.2
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCcc-----ccCcHHHHHHhccchhhhccccccc-CCCCCCcccceEE
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYMGGRTAT-----EKQSVEQQVLESNPVLEAFGNAKTL-RNNNSSRFGKFVE 220 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~-----~~~~ie~~il~snpilEaFGNAkT~-~N~NSSRfgk~~~ 220 (1507)
..+=+|+|+||||+||-..+++|=++ |.+... +-..|...+++| |-||..|=. ...+.+|-|+|-.
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh----CcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCcceeE
Confidence 46778999999999999888766543 332211 011232322222 459988832 2456889999854
No 342
>PRK14527 adenylate kinase; Provisional
Probab=81.90 E-value=1.1 Score=49.33 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987774
No 343
>PRK06893 DNA replication initiation factor; Validated
Probab=81.89 E-value=1.9 Score=48.96 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 137 DSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+.+.+ ....+-++++.|.||+|||..+..+.+.++.-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333444 34566789999999999999999999987654
No 344
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=81.89 E-value=4 Score=50.56 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=32.9
Q ss_pred hHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 133 FAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|....
T Consensus 129 l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 129 LPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred cCCCceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 44445567777777899999999999999999988877644
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=81.79 E-value=0.95 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.0
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..-+|.|+|.||+|||+..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34689999999999999888765543
No 346
>PRK10646 ADP-binding protein; Provisional
Probab=81.76 E-value=0.99 Score=47.59 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999999884
No 347
>PRK08727 hypothetical protein; Validated
Probab=81.71 E-value=1.9 Score=49.13 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=25.9
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
....+.|+|.|.||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3445789999999999999999988887654
No 348
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.69 E-value=0.76 Score=57.55 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.7
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+-.+.=|-||||||||+.+|.|+..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567779999999999999999987743
No 349
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.67 E-value=1.7 Score=54.99 Aligned_cols=57 Identities=19% Similarity=0.445 Sum_probs=38.6
Q ss_pred HHhhcCCCCCCCCChhHhhHHHHHH-HHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 118 EQYKGASLGELSPHPFAIADSAYRL-MINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 118 ~~y~~~~~~~l~PHifavA~~Ay~~-m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
+.|+=..+.++.-|--.+. ..+. +...+-.+++|++|+.|.|||++++.+.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~--~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVK--VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHH--HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4566555555543322222 3333 2345568999999999999999999999998653
No 350
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.65 E-value=17 Score=43.36 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 993 ENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 993 e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+++.++.+...+.+++.+++++.+++.+++.++..+...++++-...-+....++-++.+++++.+.+..
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333433333333333333333333333334444444455455555555544443
No 351
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.42 E-value=1.4 Score=55.46 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=39.3
Q ss_pred HHHhhcCCCCCCC--CChhHhhHHHHHHHHh-cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 117 MEQYKGASLGELS--PHPFAIADSAYRLMIN-EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 117 ~~~y~~~~~~~l~--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.++|+=..+.++- +|+-. ..+++.. .+-+|+++++|..|.|||++++++-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3566655555553 44433 3444433 4568999999999999999999999988554
No 352
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.41 E-value=1 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999888877
No 353
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.36 E-value=2e+02 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 1001 VSSLEKKIDETERKFEETNKLSEE 1024 (1507)
Q Consensus 1001 ~~~le~~~~ele~~~~el~~~~ee 1024 (1507)
++.++-++..++++..-+...+++
T Consensus 123 fE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555444444
No 354
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=81.34 E-value=1.4 Score=53.37 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=31.3
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVE 188 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie 188 (1507)
..|+|-+-|+||||||+..+++.|++-.-+|.-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 56999999999999999999999999655543222344444
No 355
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.30 E-value=44 Score=32.81 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred cccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000442 974 PVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDI 1053 (1507)
Q Consensus 974 ~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~L 1053 (1507)
..+..........+..|+..++..+...+++.++.++++.....++.+.....+.+.+++.+++++...++. ++++.+
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~ 82 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKL 82 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_pred HHHHHHHHHh
Q 000442 1054 ETEDQILRHQ 1063 (1507)
Q Consensus 1054 E~E~~~Lk~q 1063 (1507)
+-+...++.+
T Consensus 83 ~l~~r~~k~~ 92 (107)
T PF09304_consen 83 ELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 356
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=81.30 E-value=0.94 Score=53.90 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
++.|++=|-||||||||+....+++-+..-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999999877643
No 357
>PRK11281 hypothetical protein; Provisional
Probab=81.29 E-value=2.5e+02 Score=39.37 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1039 LKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1039 L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
.-+.+.+|.+.+.++.++++.+.+
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~ 306 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQ 306 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777665544
No 358
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=81.23 E-value=1.3 Score=47.13 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.16 E-value=1.6 Score=47.64 Aligned_cols=103 Identities=19% Similarity=0.181 Sum_probs=53.4
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHH--hccchhhh----cccccccCCCCCCcccceEEEEEc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVL--ESNPVLEA----FGNAKTLRNNNSSRFGKFVELQFD 224 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il--~snpilEa----FGNAkT~~N~NSSRfgk~~~l~f~ 224 (1507)
-||++|-.|||||+-+|.+.+-|-.-.-....-+...-.-++ +|-||++. |-+-++.|--.|-==. |+ +-.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn-~~-VIvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN-YL-VIVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc-eE-EEEe
Confidence 389999999999999999999887532211000000000111 23333211 1111111100000001 22 2345
Q ss_pred CCCceeeeeeeeecccCcceeccCCCCCcceeeecccc
Q 000442 225 ERGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCA 262 (1507)
Q Consensus 225 ~~g~i~ga~i~~yLLEksRv~~~~~~ErnfHiFYql~~ 262 (1507)
....+.|.+-+-|++-|+|=+ +|-|-|..+.
T Consensus 81 dtNYyksmRrqL~ceak~~~t-------t~ciIyl~~p 111 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKT-------TWCIIYLRTP 111 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCC-------ceEEEEEccC
Confidence 566788888788888777765 4777776654
No 360
>PRK06936 type III secretion system ATPase; Provisional
Probab=81.10 E-value=2.2 Score=52.69 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.1
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.++...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 144 ~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 144 TPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 4455555666677677889999999999999999988887654
No 361
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=81.06 E-value=1.2 Score=51.37 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-.-|+|+|+||+||||++=-+++-=
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhc
Confidence 4679999999999999987666543
No 362
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.81 E-value=1.9 Score=56.22 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 141 RLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
..+.....++.|+|.|++|+|||+.++.+.+....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999887643
No 363
>PRK08356 hypothetical protein; Provisional
Probab=80.81 E-value=0.98 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCCchhHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999954
No 364
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=80.69 E-value=2.2 Score=54.60 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=41.6
Q ss_pred HHHHhhcCCCCCCCCChhHhhHHHHHHHH-hcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 116 MMEQYKGASLGELSPHPFAIADSAYRLMI-NEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 116 ~~~~y~~~~~~~l~PHifavA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
..+.|+=..+.++--|--.+ ..+..+. ..+-++++|++|+.|.|||+.++.+-+.|-+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567666666654333333 3444444 34568999999999999999999999999654
No 365
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=80.60 E-value=1.5 Score=53.86 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 135 IADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 135 vA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..-.|...|..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 123 tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 123 VGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred eeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555666666788999999999999999887777543
No 366
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.55 E-value=1.1 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887543
No 367
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.53 E-value=2 Score=52.00 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcC-CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 136 ADSAYRLMINEG-MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 136 A~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|...+..+...+ -+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 445566665554 4899999999999999999999999865
No 368
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=80.42 E-value=3.5 Score=51.27 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.9
Q ss_pred hHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 133 FAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 133 favA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|+.+
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4445556666777788999999999999999998877765
No 369
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.33 E-value=1.5 Score=51.39 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=33.6
Q ss_pred hhHhhHHHHHHHHhc--------CCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 132 PFAIADSAYRLMINE--------GMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999999764
No 370
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.32 E-value=1.3 Score=51.04 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=49.3
Q ss_pred ccCccccccCceEEEecCCCCCCCCCCHHHHHHhhcC-----CC--CCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCC
Q 000442 87 DVNEIYTYTGNILIAVNPFRRLPHLYDNHMMEQYKGA-----SL--GELSPHPFAIADSAYRLMINEGMSQSILVSGESG 159 (1507)
Q Consensus 87 ~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~-----~~--~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSG 159 (1507)
.-|-=|++.|..=+-||-|+... -|+- .++-- .+ -.+||-+..++ ...+--|+|+|..|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~----vlR~Ip~~i~~~e~LglP~i~~~~~---------~~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYAL----VLRLIPSKIPTLEELGLPPIVRELA---------ESPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEE----EEeccCccCCCHHHcCCCHHHHHHH---------hCCCceEEEeCCCC
Confidence 34667888888888888887653 1211 01100 11 12455444433 34567899999999
Q ss_pred CCchhHHHHHHHHHHH
Q 000442 160 AGKTESTKMLMQYLAY 175 (1507)
Q Consensus 160 aGKTe~~k~~~~yla~ 175 (1507)
||||+|.--++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999963
No 371
>PRK14528 adenylate kinase; Provisional
Probab=80.20 E-value=1.4 Score=48.37 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998776
No 372
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.20 E-value=1.2 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=22.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888877643
No 373
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.19 E-value=1.2 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999888654
No 374
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.18 E-value=0.96 Score=53.81 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999988776
No 375
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=80.17 E-value=1.2 Score=49.82 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999888754
No 376
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.15 E-value=0.87 Score=58.53 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.+.+.|.|.|+||||||+..|.+++++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999998764
No 377
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.09 E-value=1.2 Score=50.43 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.8
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.|+|-|-||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998854
No 378
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.08 E-value=1.2 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 356899999999999999999888754
No 379
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.06 E-value=3.1e+02 Score=39.69 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.9
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 467899999999999999999999764
No 380
>PRK00698 tmk thymidylate kinase; Validated
Probab=80.06 E-value=1.7 Score=48.14 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.6
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998643
No 381
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.01 E-value=1.4 Score=56.68 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=32.1
Q ss_pred ChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 131 HPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 131 HifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
-|.++-.++|.. +.++.-.|+|+|-||||||+.++.+...|-.
T Consensus 376 eV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 376 EVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344444444432 4456679999999999999999999998865
No 382
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=80.01 E-value=1.2 Score=49.70 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998887644
No 383
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.98 E-value=1.1 Score=57.71 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=38.7
Q ss_pred HHHhhcCCCCCCCCChhHhhHHHHHHHHh-cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 117 MEQYKGASLGELSPHPFAIADSAYRLMIN-EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 117 ~~~y~~~~~~~l~PHifavA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.++|+=..+.++--|=-.+ +...++.. .+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 15 a~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3456555555543222211 23444444 4458999999999999999999999998653
No 384
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.98 E-value=1.4 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.3
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999987777654
No 385
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.93 E-value=2.2 Score=48.15 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCC--ceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 135 IADSAYRLMINEGM--SQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 135 vA~~Ay~~m~~~~~--~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.|-.|...+..... -..++|.|+||+|||.....+..++...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34445555554432 3579999999999999888888877654
No 386
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=79.92 E-value=1.3 Score=48.62 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
...+.+.|.|+||||||+..|.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877643
No 387
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.90 E-value=1.4 Score=51.03 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
+..-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456799999999999999999999886553
No 388
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=79.80 E-value=1.3 Score=48.24 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999999998663
No 389
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=79.73 E-value=1.7 Score=41.13 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=23.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
|+++|-.|+|||+.+..+.+.|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 390
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.63 E-value=63 Score=40.66 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 893 KLEKEVEELTWRLQLEKRMRADLEE 917 (1507)
Q Consensus 893 ~le~k~~el~~rl~~e~r~~~~le~ 917 (1507)
.|.-++.-|..+.+.....+.++|-
T Consensus 122 sL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 122 SLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred hheehHHHHHHHHHHhhhhHHHHHH
Confidence 3334444455555544444444443
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.62 E-value=1.1 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..+.+.|.|++|||||+..+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999877665544
No 392
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=79.62 E-value=1.2 Score=53.38 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999988654
No 393
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.61 E-value=1.4 Score=49.28 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988887644
No 394
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=79.56 E-value=3.7 Score=50.61 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 138 SAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.|...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344445555788999999999999999988766543
No 395
>PRK14974 cell division protein FtsY; Provisional
Probab=79.50 E-value=2.8 Score=50.32 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999987654
No 396
>PRK05922 type III secretion system ATPase; Validated
Probab=79.49 E-value=2.1 Score=52.79 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=34.2
Q ss_pred hhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 132 PFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
++...-+|...+..-++.|-|.|.|.+|+|||+..+.|.++.
T Consensus 140 ~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 455555666667777899999999999999999988888754
No 397
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.44 E-value=1.4 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887644
No 398
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.41 E-value=2.2 Score=46.60 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+..-.|+|+|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999999853
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=79.36 E-value=2.9 Score=48.79 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=34.2
Q ss_pred hhHhhHHHHHHHHh---------cCCceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 132 PFAIADSAYRLMIN---------EGMSQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 132 ifavA~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45555566655432 24568999999999999999988888887654
No 400
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.32 E-value=1.4 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999988766
No 401
>PRK13768 GTPase; Provisional
Probab=79.28 E-value=1.5 Score=50.54 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
.|+|+|.+|+|||+.+..+..+++..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998654
No 402
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.25 E-value=1.5 Score=47.67 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999888887777543
No 403
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.20 E-value=1.2 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.3
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999999887655
No 404
>PRK08116 hypothetical protein; Validated
Probab=79.19 E-value=2.6 Score=49.14 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=32.5
Q ss_pred hhHhhHHHHHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 132 PFAIADSAYRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 132 ifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.|+.|..--...... ..+..+++.|.+|+|||..+..|.++|..-
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455555444443322 345679999999999999999999999754
No 405
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.17 E-value=1.3e+02 Score=34.75 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 884 TGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIK 946 (1507)
Q Consensus 884 ~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~ 946 (1507)
...++..-..|.+++.++..+.+..+.+..+.+ .+.++++.++.+++..+.+....+..
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~----~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK----AEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666665554444443 34666677777777777766655543
No 406
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.16 E-value=74 Score=41.91 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 987 VNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEER 1025 (1507)
Q Consensus 987 ~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~ 1025 (1507)
+..|+.++..++.....++.....+.++.++.......+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444443
No 407
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=79.12 E-value=1.4 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988774
No 408
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=79.11 E-value=1 Score=59.19 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
..|.|-|.|+||||||+.+|+++..+.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999987753
No 409
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=79.07 E-value=1.8 Score=46.12 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=24.6
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999997654
No 410
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.01 E-value=1.8 Score=52.09 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 134 AIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 134 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 677888888888899999999999999999999999888754
No 411
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.95 E-value=2.1e+02 Score=37.37 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHhhhHHHHHHHHHHHHHHHHH
Q 000442 926 LKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMEREAAEKEAVQVPVIREVPVIDHVMVNKLTAENEELKALVSSLE 1005 (1507)
Q Consensus 926 L~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~e~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le 1005 (1507)
|...+..+...++++.++..+...+-+.+..+++++..+.-.....-....-+.......+.+++...+..|+.+...=.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554455555555555555444422110000000011111234566677777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1006 KKIDETERKFEETNKLSEE--------RLKEALE---------AESKIIELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1006 ~~~~ele~~~~el~~~~ee--------~~~~l~~---------lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
+++.+....+..+...+.- ....+.+ ..+.++.|...+..|+++..+..+..+.++.+
T Consensus 181 ekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~ 255 (660)
T KOG4302|consen 181 EKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTK 255 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655544321 1111111 22344555666666666555555555555543
No 412
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.93 E-value=1.3 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.1
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988866
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=78.89 E-value=1.4 Score=49.37 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999988887654
No 414
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.83 E-value=1.4 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..+.+.|.|++|||||+..|.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999888887543
No 415
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=78.79 E-value=2.6 Score=46.21 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 140 YRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 140 y~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
++++... +-++++++.|+.|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445544 45799999999999999999999998864
No 416
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=78.79 E-value=2.3 Score=52.46 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcC-----------CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 111 LYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEG-----------MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 111 ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.++..+..|-....-...+=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5567777766554333333333445555554433221 24789999999999999999886554
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=78.79 E-value=1.8 Score=55.00 Aligned_cols=58 Identities=31% Similarity=0.464 Sum_probs=42.0
Q ss_pred HHHHhhcCCCCCCCCChhHhhH--HHHHHHHhcC-CceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 116 MMEQYKGASLGELSPHPFAIAD--SAYRLMINEG-MSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 116 ~~~~y~~~~~~~l~PHifavA~--~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.++.|+=+...+|..|-=-|.+ .....|.... ..+-.|++|.+|+|||++.+.+.+.|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4667777777888888655543 3344554443 35677889999999999999988876
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.76 E-value=1.9 Score=51.39 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998654
No 419
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=78.73 E-value=1.4 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEeCCCCCCchhHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1507)
|-|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887655
No 420
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.67 E-value=1.5 Score=47.55 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888876543
No 421
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=78.64 E-value=2.3 Score=49.93 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999988
No 422
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.63 E-value=2.5 Score=52.15 Aligned_cols=56 Identities=13% Similarity=0.326 Sum_probs=39.4
Q ss_pred HHhhcCCCCCCCCChhHhhHHHHHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 118 EQYKGASLGELSPHPFAIADSAYRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 118 ~~y~~~~~~~l~PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
+.|+=..+.++--|-.++ ..++++.+. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345544444544443333 356666665 45789999999999999999999998854
No 423
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.54 E-value=2.2e+02 Score=37.05 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=7.4
Q ss_pred HhhhHHHHHHHHHHHH
Q 000442 985 VMVNKLTAENEELKAL 1000 (1507)
Q Consensus 985 ~~~~~L~~e~~~lq~~ 1000 (1507)
...++++.++..++..
T Consensus 301 ~~L~ele~RL~~l~~L 316 (563)
T TIGR00634 301 ERLNEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444443
No 424
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=78.53 E-value=4.3 Score=33.58 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=33.4
Q ss_pred CCEEEEeCCC-CCeEeEEEEEEc-CCeEEEEeCC-CcEEEEecCCC
Q 000442 10 GSIVWTEDPE-EAWIDGEVEEVN-DEDIKIACTS-GKTVVAKASNV 52 (1507)
Q Consensus 10 g~~vw~~~~~-~~~~~~~v~~~~-~~~~~v~~~~-g~~~~~~~~~~ 52 (1507)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6778887664 899999999997 6678888755 88877766544
No 425
>PLN02796 D-glycerate 3-kinase
Probab=78.51 E-value=1.4 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1507)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 388999999999999998887764
No 426
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.47 E-value=1.5 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888887643
No 427
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=78.41 E-value=6.7 Score=34.43 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred ccccCCEEEEeC-CCCCeEeEEEEEEcC-CeEEEEeCC---CcEEEEecCCCCCCC
Q 000442 6 GLVVGSIVWTED-PEEAWIDGEVEEVND-EDIKIACTS---GKTVVAKASNVYPKD 56 (1507)
Q Consensus 6 ~~~~g~~vw~~~-~~~~~~~~~v~~~~~-~~~~v~~~~---g~~~~~~~~~~~~~~ 56 (1507)
.+.+|+.|-+.. .+.+|-.|.|+++.+ +...|...+ |...++..+++-|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHP 57 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCC
Confidence 578999999874 466999999999976 678888755 445666766665543
No 428
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.39 E-value=1.4 Score=52.81 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+-|-||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999998865
No 429
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=78.30 E-value=1.5 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=22.4
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 430
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.21 E-value=1.6e+02 Score=35.14 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000442 1027 KEALEAESKIIELKTCMQRLEEKLSDIET 1055 (1507)
Q Consensus 1027 ~~l~~lE~e~~~L~~~~~~Le~~l~~LE~ 1055 (1507)
.+..-+.+.+.+++.++.-++..+.....
T Consensus 196 ~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 431
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.10 E-value=38 Score=33.10 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 992 AENEELKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 992 ~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.+...|+.+..-|++.+-+.......+...+......+..++.+++-|.-.++.|..++..|.+|.+...
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555666666666666777777888888888888888888888877543
No 432
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=78.08 E-value=1.5 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
.-.|+|.|+||+||||+|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999999877775
No 433
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=78.06 E-value=1.5 Score=47.98 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998874
No 434
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.05 E-value=1.7 Score=51.17 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.1
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHhcC
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYMGG 178 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1507)
.|++.|++|+|||..++.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 435
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.00 E-value=1.5 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999988876543
No 436
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.99 E-value=1.9 Score=46.90 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
...+.+++.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999988763
No 437
>PRK03839 putative kinase; Provisional
Probab=77.99 E-value=1.6 Score=47.41 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988876
No 438
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.97 E-value=2.1 Score=55.14 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=40.8
Q ss_pred HHHHhhcCCCCCC--CCChhHhhHHHHHHHHhcCC-ceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 116 MMEQYKGASLGEL--SPHPFAIADSAYRLMINEGM-SQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 116 ~~~~y~~~~~~~l--~PHifavA~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
..++|+=+.+.++ .+|+- .-++.+...++ .+++|++|+.|.|||++++.+.++|-.
T Consensus 6 la~KyRP~sf~dIiGQe~v~----~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVK----AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3456766665554 35553 33445555554 899999999999999999999999964
No 439
>PRK14531 adenylate kinase; Provisional
Probab=77.95 E-value=1.8 Score=47.28 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
|-|+|.|.+|||||+.++.+-+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988873
No 440
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.91 E-value=1.6 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+-.|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998883
No 441
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.83 E-value=1.6 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888876543
No 442
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.79 E-value=1.8e+02 Score=39.74 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=10.3
Q ss_pred hhhcccChhhHHHHHHHHHH
Q 000442 306 MEVVGINSDEQDAIFRVVAA 325 (1507)
Q Consensus 306 l~~lg~~~~~~~~i~~ilaa 325 (1507)
|+.+-.++.+|..||.-+++
T Consensus 99 FDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 99 FDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred cceeeCcchhHHHHHHHHHH
Confidence 44444445556666654443
No 443
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.66 E-value=3 Score=53.24 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=39.2
Q ss_pred HHHhhcCCCCCCC--CChhHhhHHHHHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 117 MEQYKGASLGELS--PHPFAIADSAYRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 117 ~~~y~~~~~~~l~--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.++|+=..+.++- +|+... ...+... +-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4566666666554 444433 3444444 45688999999999999999999999864
No 444
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.64 E-value=19 Score=44.37 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=40.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000442 984 HVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLKEA-LEAESKIIELKTCMQRLEEKLSDIETEDQILR 1061 (1507)
Q Consensus 984 ~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l-~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk 1061 (1507)
.+-+..|-.+.++++.++..+..+++.+.++.+.++++......++ ..++.+..++..+.+.|+++..+++..++.|+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666655544433333 22233333444444444444444444444443
No 445
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.62 E-value=1.4 Score=57.45 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.+.|.|.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999998764
No 446
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=77.61 E-value=1.6e+02 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000442 1037 IELKTCMQRLEEKLSDIETEDQILRHQ 1063 (1507)
Q Consensus 1037 ~~L~~~~~~Le~~l~~LE~E~~~Lk~q 1063 (1507)
..|+++.+.|.+++.+.+.|.++++.+
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888887754
No 447
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.60 E-value=2.3e+02 Score=36.78 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHH
Q 000442 1032 AESKIIELKTCMQR---LEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1032 lE~e~~~L~~~~~~---Le~~l~~LE~E~~~Lk~ 1062 (1507)
+.++++.|+..+.+ |+.....||-+|..++.
T Consensus 280 LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~t 313 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQSTLLGLELENEDLLT 313 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444443333 33455566666666654
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.57 E-value=1.6 Score=49.46 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876544
No 449
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=77.41 E-value=1.7 Score=46.57 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988887654
No 450
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.36 E-value=1.6 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998876
No 451
>PRK10436 hypothetical protein; Provisional
Probab=77.30 E-value=1.6 Score=54.58 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 139 AYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
.++.+.. ...=-|+|+|..|||||++...+++++.
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3444442 2345799999999999999998888874
No 452
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=77.26 E-value=1.7 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998887653
No 453
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.23 E-value=34 Score=30.32 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000442 1023 EERLKEALEAESKIIELKTCMQRLEEKLSD 1052 (1507)
Q Consensus 1023 ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~ 1052 (1507)
-....++.+.+..+..|..++..|++++.+
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443
No 454
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=77.22 E-value=1.7 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 151 SILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.++|.|.||||||...+.++.-++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 68999999999999999999888753
No 455
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.16 E-value=1.7 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999998887654
No 456
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=77.13 E-value=1 Score=46.69 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=20.5
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
..+..|+|+||+|+||+..+++|-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56788999999999999887765553
No 457
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.13 E-value=3.2 Score=52.22 Aligned_cols=53 Identities=21% Similarity=0.430 Sum_probs=37.7
Q ss_pred HHhhcCCCCCC--CCChhHhhHHHHHHHHhcC-CceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 118 EQYKGASLGEL--SPHPFAIADSAYRLMINEG-MSQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 118 ~~y~~~~~~~l--~PHifavA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
+.|+-+.+.++ ++|+ ....+.+...+ -++++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45665555554 3455 33455555544 457899999999999999999988774
No 458
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.09 E-value=3.8 Score=49.08 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.4
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 459
>PF13479 AAA_24: AAA domain
Probab=77.05 E-value=1.5 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.5
Q ss_pred CceEEEEeCCCCCCchhHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKML 169 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~ 169 (1507)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999766544
No 460
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=77.05 E-value=1.8 Score=48.74 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988877543
No 461
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.05 E-value=1.7 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999888876543
No 462
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.97 E-value=1.7 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+ +.+.|.|+||||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999888886543
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=76.84 E-value=1.8 Score=49.55 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999888876543
No 464
>PRK06620 hypothetical protein; Validated
Probab=76.82 E-value=2.8 Score=47.08 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCCchhHHHHH
Q 000442 150 QSILVSGESGAGKTESTKML 169 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~ 169 (1507)
.+++|.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888754
No 465
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=76.76 E-value=1.8 Score=48.14 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
.+.+.+.|.|+||||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998888753
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=76.74 E-value=1.8 Score=48.54 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
...+.+.|.|+||||||+..|.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999999999999888864
No 467
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.74 E-value=3.2 Score=53.05 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=38.8
Q ss_pred HHHhhcCCCCCCC--CChhHhhHHHHHHHHhc-CCceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 117 MEQYKGASLGELS--PHPFAIADSAYRLMINE-GMSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 117 ~~~y~~~~~~~l~--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
.++|+-+.+.++- +|+-. +...+... +-++++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556655555553 44443 34444443 56788999999999999999999999854
No 468
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.61 E-value=34 Score=31.13 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000442 997 LKALVSSLEKKIDETERKFEETNKLSEERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQI 1059 (1507)
Q Consensus 997 lq~~~~~le~~~~ele~~~~el~~~~ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~ 1059 (1507)
|+.++..|+..++.+..++......+..+..+.......+...-.+..+|+.++..|..+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444444444444444445555555555555555555443
No 469
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.54 E-value=2.9 Score=55.30 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 138 SAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
...+.+...++..++|+.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457777888888899999999999999999998765
No 470
>PRK06921 hypothetical protein; Provisional
Probab=76.52 E-value=1.9 Score=50.10 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAY 175 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1507)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999888887764
No 471
>PRK02496 adk adenylate kinase; Provisional
Probab=76.52 E-value=1.9 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEeCCCCCCchhHHHHHHHHHH
Q 000442 152 ILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1507)
|+|.|.+|||||+.++.+-+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988763
No 472
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=76.50 E-value=1.8 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887654
No 473
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.45 E-value=1.9 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
.+.+.+.|.|+||||||+..+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988887753
No 474
>PF13173 AAA_14: AAA domain
Probab=76.44 E-value=2.2 Score=43.60 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.7
Q ss_pred ceEEEEeCCCCCCchhHHHHHHHHHH
Q 000442 149 SQSILVSGESGAGKTESTKMLMQYLA 174 (1507)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1507)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 475
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=76.37 E-value=1.9 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=21.9
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
....|+|.|+||+|||+++--+|+.
T Consensus 145 ~g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 145 YGVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999998877775
No 476
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.30 E-value=1.9 Score=46.49 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCceEEEEeCCCCCCchhHHHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988876543
No 477
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.29 E-value=20 Score=41.05 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000442 1023 EERLKEALEAESKIIELKTCMQRLEEKLSDIETEDQILRH 1062 (1507)
Q Consensus 1023 ee~~~~l~~lE~e~~~L~~~~~~Le~~l~~LE~E~~~Lk~ 1062 (1507)
+....+..++|+++..+..++..|+.++..|+.+|-+|-+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777777777755
No 478
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.23 E-value=1.9 Score=48.46 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.0
Q ss_pred CceEEEEeCCCCCCchhHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQ 171 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1507)
..+.+.|.|+||||||+..|.|.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567889999999999999888764
No 479
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.20 E-value=2.1 Score=54.22 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.0
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
.+-.++++++|++|+|||+.++.+.+.+-..
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4457889999999999999999999998653
No 480
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.19 E-value=1.9 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHH
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1507)
..+.+.|.|+||||||+..|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999998888753
No 481
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.03 E-value=3.3 Score=45.86 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHHHHh
Q 000442 138 SAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYLAYM 176 (1507)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1507)
+|++.+.. ..++.++|.|..|+|||.+.+.+.+++..-
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 45555554 457889999999999999999999988764
No 482
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=76.02 E-value=1.9 Score=47.93 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 483
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=76.02 E-value=1.9 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|+||||||+..|.|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 484
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=76.01 E-value=2.8 Score=45.95 Aligned_cols=47 Identities=28% Similarity=0.480 Sum_probs=0.0
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhcCcCccccCcHHHHHHhccc-----hhhhcc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMGGRTATEKQSVEQQVLESNP-----VLEAFG 202 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snp-----ilEaFG 202 (1507)
|.|+|-.|||||+.++ +|+..++-.--+...+-.+++..+. |.+.||
T Consensus 2 i~itG~~gsGKst~~~----~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVAN----YLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHH----HHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHC
No 485
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=76.01 E-value=1.8 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|+||||||+..|.|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
No 486
>PRK10908 cell division protein FtsE; Provisional
Probab=75.99 E-value=2 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|+||||||+..|.|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=75.97 E-value=2.2 Score=46.69 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=0.0
Q ss_pred EEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 152 ILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
|+|.|-.|||||+.++.+-++|...|
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g 28 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARG 28 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
No 488
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=75.95 E-value=5.9 Score=45.48 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred cccCCEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCCCcccccCcCCChHHHHHHHHhhh
Q 000442 7 LVVGSIVWTEDPEEAWIDGEVEEVNDEDIKIACTSGKTVVAKASNVYPKDPEFPQCGVDDMTKLAYLHEPGVLQNLRCRY 86 (1507)
Q Consensus 7 ~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R~ 86 (1507)
..+||+||+...+. -.|.|.++-...-.+. .....++|-+.-.-.+++|..-.+.-.||
T Consensus 1 ~~vGD~V~~~~~~~--~~~~i~~i~eR~~~L~-------------------r~~~~n~D~viiV~d~~~p~~s~~~l~r~ 59 (245)
T TIGR00157 1 LVVGDRVVWEPGNV--VKVYGGAIAERKNELT-------------------RPIVANIDQIVIVSSAVLPELSLNQLDRF 59 (245)
T ss_pred CCCCcEEEEEecCC--CceEEEEEecccceEE-------------------CcccccCCEEEEEEECCCCCCCHHHHHHH
Q ss_pred ccCccccccCceEEEecCCCCC-CCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhH
Q 000442 87 DVNEIYTYTGNILIAVNPFRRL-PHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTES 165 (1507)
Q Consensus 87 ~~~~iYT~~G~~LiavNP~~~l-~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1507)
.. .+...-=+++|.+|=.--. +.-...+.+..|.. .+-.--.+=|........+...-.++.+++.|.||+|||+.
T Consensus 60 l~-~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~--~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStL 136 (245)
T TIGR00157 60 LV-VAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRN--IGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSL 136 (245)
T ss_pred HH-HHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHH--CCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHH
Q ss_pred HHHHH
Q 000442 166 TKMLM 170 (1507)
Q Consensus 166 ~k~~~ 170 (1507)
...++
T Consensus 137 iN~L~ 141 (245)
T TIGR00157 137 INALD 141 (245)
T ss_pred HHHHh
No 489
>PRK04195 replication factor C large subunit; Provisional
Probab=75.89 E-value=2.1 Score=54.34 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhhcCCCCCC--CCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 117 MEQYKGASLGEL--SPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 117 ~~~y~~~~~~~l--~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
++.|+=+.+.++ .+++-+.-...............++|+|++|.|||+.++.+.+.+
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
No 490
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=75.89 E-value=2.1 Score=48.21 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=0.0
Q ss_pred EEEEeCCCCCCchhHHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1507)
.|.|.|.||||||+.+|.+...|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
No 491
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=75.87 E-value=2.2 Score=47.20 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=0.0
Q ss_pred cCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 146 EGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..++..||+.|.+|||||+.+..++..+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhc
No 492
>PRK06820 type III secretion system ATPase; Validated
Probab=75.84 E-value=3.2 Score=51.38 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred ccccCCEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEEEecCCCCCCCCCCCCCCCcccccCcCCChHHHHHHHHhh
Q 000442 6 GLVVGSIVWTEDPEEAWIDGEVEEVNDEDIKIACTSGKTVVAKASNVYPKDPEFPQCGVDDMTKLAYLHEPGVLQNLRCR 85 (1507)
Q Consensus 6 ~~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R 85 (1507)
....|+.|+|.... ..|+|+...++.+.+..-++..-....+.+.+........--++|
T Consensus 47 ~~~~ge~~~i~~~~---~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~l------------------ 105 (440)
T PRK06820 47 GVAQGELCRIEPQG---MLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADL------------------ 105 (440)
T ss_pred CCCcCCEEEEecCC---eEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCCcEEEechhh------------------
Q ss_pred hccCccccccCceE---------------EEecCCCCCCCCCCHHHHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCce
Q 000442 86 YDVNEIYTYTGNIL---------------IAVNPFRRLPHLYDNHMMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQ 150 (1507)
Q Consensus 86 ~~~~~iYT~~G~~L---------------iavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~Q 150 (1507)
-+.++--.|..| -+.||+.+-+ +-.+|...-.|...|..-++.|
T Consensus 106 --lGrv~d~~G~pld~~~~~~~~~~~i~~~~p~p~~R~~-------------------~~~~l~TGi~aID~l~~i~~Gq 164 (440)
T PRK06820 106 --AGRILDGLGAPIDGGPPLTGQWRELDCPPPSPLTRQP-------------------IEQMLTTGIRAIDGILSCGEGQ 164 (440)
T ss_pred --cCCEECccCCccCCCCCCCcccccccCCCCChhhcCC-------------------chhhccCCCceecceEEecCCC
Q ss_pred EEEEeCCCCCCchhHHHHHHHH
Q 000442 151 SILVSGESGAGKTESTKMLMQY 172 (1507)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~y 172 (1507)
.+.|.|.||+|||+..+.|..+
T Consensus 165 ri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 165 RIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred EEEEECCCCCChHHHHHHHhcc
No 493
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=75.83 E-value=2 Score=48.64 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|++|||||+..|.|.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILA 57 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
No 494
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.82 E-value=1.9 Score=48.79 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
.+.+.+.|.|+||||||+..|.|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 495
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=75.81 E-value=2 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCCchhHHHHHH
Q 000442 147 GMSQSILVSGESGAGKTESTKMLM 170 (1507)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1507)
...+.+.|.|+||||||+..|.|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 496
>PRK11281 hypothetical protein; Provisional
Probab=75.80 E-value=3.5e+02 Score=38.00 Aligned_cols=202 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 874 LRKLKMAAKETGALQAAKSKLEKEVEELTWRLQLEK----------------RMRADLEEAKTQENAKLKSALQEMQQQF 937 (1507)
Q Consensus 874 ~~~Lk~ea~~~~~l~~~~~~le~k~~el~~rl~~e~----------------r~~~~le~~~~~e~~kL~~~l~ele~~l 937 (1507)
+.+..+..+....+++.-.....++.+...+++..+ ..+...-.....+.+..++.+.+.+.++
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhccccccccccchhhHhhhHHHHHHHH
Q 000442 938 EETKTLLIKEREAAKKTTEALLIMERE---------------------AAEKEAVQVPVIREVPVIDHVMVNKLTAENEE 996 (1507)
Q Consensus 938 ee~~~~l~~e~~~~~~~~e~~~~le~e---------------------~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~ 996 (1507)
.....+.+...........++.+.+.+ +...++.+.+..+..........+-.+.+.+.
T Consensus 152 i~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~ 231 (1113)
T PRK11281 152 VSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDY 231 (1113)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 997 LKALVSSLEKKIDETERKFEE------------------------------TNKLSEERLKEALEAESKIIELKTCMQRL 1046 (1507)
Q Consensus 997 lq~~~~~le~~~~ele~~~~e------------------------------l~~~~ee~~~~l~~lE~e~~~L~~~~~~L 1046 (1507)
+..+++.++..++.+.+.+.+ ..+.+.++.+++....++.+.+..+..+.
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhhcccCchhhhhh
Q 000442 1047 EEKLSDIETEDQILRHQALFNSSSRKMSE 1075 (1507)
Q Consensus 1047 e~~l~~LE~E~~~Lk~qal~~s~~~~l~~ 1075 (1507)
++.+.++......+++|.-+...+..++.
T Consensus 312 ~~~l~~~~q~~~~i~eqi~~l~~s~~l~~ 340 (1113)
T PRK11281 312 KNWLDRLTQSERNIKEQISVLKGSLLLSR 340 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHH
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=75.74 E-value=2.2 Score=45.90 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCCchhHHHHHHHHH
Q 000442 150 QSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
+.|+|.|-+|||||+.++.+-+.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
No 498
>PRK06526 transposase; Provisional
Probab=75.74 E-value=2.3 Score=49.04 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred CceEEEEeCCCCCCchhHHHHHHHHHHHhc
Q 000442 148 MSQSILVSGESGAGKTESTKMLMQYLAYMG 177 (1507)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1507)
..+.+++.|.+|+|||..+..|...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
No 499
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.73 E-value=4.3 Score=49.54 Aligned_cols=57 Identities=18% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCCCCChhHhhHHHHHHHHhcCCceEEEEeCCCCCCchhHHHHHHHHH
Q 000442 116 MMEQYKGASLGELSPHPFAIADSAYRLMINEGMSQSILVSGESGAGKTESTKMLMQYL 173 (1507)
Q Consensus 116 ~~~~y~~~~~~~l~PHifavA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1507)
..++|+-..+.++--|-.++ +.--+.+....-++.++++|+.|.|||+.++.+.+++
T Consensus 7 ~~~k~rP~~~~~iig~~~~~-~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHIT-NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHH-HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
No 500
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.73 E-value=1.6e+02 Score=36.18 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 884 TGALQAAKSKLEKEVEELTWRLQLEKRMRADLEEAKTQENAKLKSALQEMQQQFEETKTLLIKEREAAKKTTEALLIMER 963 (1507)
Q Consensus 884 ~~~l~~~~~~le~k~~el~~rl~~e~r~~~~le~~~~~e~~kL~~~l~ele~~lee~~~~l~~e~~~~~~~~e~~~~le~ 963 (1507)
...+...+.-.|..+.++.+ ..-+..+...+.. ..+...++.+...++....-.+..+++-....++...+++..++
T Consensus 327 ~sqleSqr~y~e~~~~e~~q--sqlen~k~~~e~~-~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQ--SQLENQKQYYELL-ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHhHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccccccccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000442 964 EAAEKEAVQVPVIREVPVIDHVMVNKLTAENEELKALVSSLEKKIDETERKFEETNKLSEERLK 1027 (1507)
Q Consensus 964 e~~~~~~~~~~~~~e~~~~~~~~~~~L~~e~~~lq~~~~~le~~~~ele~~~~el~~~~ee~~~ 1027 (1507)
+.....+. ......++.+..+.++..+...++++.++++.+.++.--.+...+
T Consensus 404 ~n~~l~kn-----------q~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 404 ENKKLIKN-----------QDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh
Done!