Query 000443
Match_columns 1504
No_of_seqs 604 out of 3108
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-239 2E-244 2218.4 98.3 1364 4-1474 3-1405(1463)
2 PTZ00014 myosin-A; Provisional 100.0 3E-205 6E-210 1933.2 77.0 770 3-777 26-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 5E-190 1E-194 1775.2 64.7 674 62-735 1-674 (674)
4 KOG0161 Myosin class II heavy 100.0 1E-185 3E-190 1816.5 94.5 774 5-808 25-823 (1930)
5 KOG0160 Myosin class V heavy c 100.0 3E-187 6E-192 1719.9 65.4 752 60-824 6-758 (862)
6 cd01380 MYSc_type_V Myosin mot 100.0 1E-185 3E-190 1746.1 62.0 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 3E-185 6E-190 1734.4 62.0 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 6E-185 1E-189 1740.4 63.4 667 60-731 3-693 (693)
9 KOG0163 Myosin class VI heavy 100.0 2E-181 4E-186 1563.7 77.9 785 8-809 2-838 (1259)
10 cd01378 MYSc_type_I Myosin mot 100.0 2E-183 3E-188 1722.7 62.1 662 63-731 1-674 (674)
11 cd01383 MYSc_type_VIII Myosin 100.0 2E-183 3E-188 1717.1 61.1 657 60-731 6-677 (677)
12 KOG0164 Myosin class I heavy c 100.0 8E-183 2E-187 1577.4 56.4 729 61-806 7-756 (1001)
13 cd01387 MYSc_type_XV Myosin mo 100.0 1E-182 2E-187 1712.9 62.1 661 62-731 1-677 (677)
14 cd01385 MYSc_type_IX Myosin mo 100.0 4E-182 9E-187 1711.0 64.5 663 62-732 7-689 (692)
15 cd01382 MYSc_type_VI Myosin mo 100.0 5E-182 1E-186 1716.1 63.1 663 61-730 3-715 (717)
16 cd01379 MYSc_type_III Myosin m 100.0 1E-179 3E-184 1675.9 61.9 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 3E-178 6E-183 1683.9 63.4 667 61-732 5-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 9E-178 2E-182 1533.4 51.3 694 60-764 16-724 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 3E-176 7E-181 1670.9 62.3 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 4E-176 9E-181 1662.7 60.7 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 1E-167 2E-172 1614.8 53.3 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 6E-116 1E-120 1111.1 29.9 752 61-826 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1.7E-28 3.7E-33 293.1 22.4 240 1158-1474 595-837 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 7.1E-28 1.5E-32 237.6 6.9 105 1348-1455 1-105 (105)
25 KOG0161 Myosin class II heavy 99.5 8E-11 1.7E-15 159.8 42.9 451 353-851 324-818 (1930)
26 cd01363 Motor_domain Myosin an 98.6 4.6E-08 1E-12 107.2 7.1 90 132-230 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.4 0.00018 3.9E-09 95.1 32.3 129 748-879 734-866 (1463)
28 KOG0520 Uncharacterized conser 98.4 7.5E-07 1.6E-11 113.7 9.5 121 734-854 808-936 (975)
29 KOG0160 Myosin class V heavy c 98.4 2.1E-06 4.5E-11 109.9 13.0 86 784-872 673-758 (862)
30 PF02736 Myosin_N: Myosin N-te 98.3 2.7E-06 5.9E-11 69.1 6.8 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 98.0 1.9E-05 4E-10 101.4 9.5 116 760-879 811-938 (975)
32 KOG0971 Microtubule-associated 97.7 0.045 9.8E-07 69.3 32.1 29 1318-1346 897-925 (1243)
33 KOG0971 Microtubule-associated 97.5 0.043 9.4E-07 69.4 27.7 70 872-944 283-355 (1243)
34 PRK11637 AmiB activator; Provi 97.3 0.042 9.1E-07 68.5 26.0 75 974-1048 171-252 (428)
35 TIGR02169 SMC_prok_A chromosom 97.3 2.1 4.5E-05 60.6 46.2 9 433-441 5-13 (1164)
36 KOG0250 DNA repair protein RAD 97.2 0.68 1.5E-05 61.2 35.1 75 976-1050 390-464 (1074)
37 PF09726 Macoilin: Transmembra 97.2 0.076 1.6E-06 69.1 26.8 20 307-326 45-64 (697)
38 KOG1029 Endocytic adaptor prot 97.2 0.054 1.2E-06 67.5 23.6 23 1368-1390 1008-1030(1118)
39 KOG0933 Structural maintenance 97.1 0.5 1.1E-05 61.4 31.7 69 973-1041 815-883 (1174)
40 PRK11637 AmiB activator; Provi 97.1 0.14 2.9E-06 64.0 27.2 29 1013-1041 224-252 (428)
41 KOG0250 DNA repair protein RAD 97.1 0.69 1.5E-05 61.2 33.3 72 980-1051 358-430 (1074)
42 PRK04863 mukB cell division pr 97.1 0.62 1.3E-05 65.7 35.2 39 1012-1050 439-477 (1486)
43 PF09726 Macoilin: Transmembra 97.1 0.16 3.5E-06 66.1 27.7 22 1030-1051 630-651 (697)
44 KOG0996 Structural maintenance 97.0 1.2 2.5E-05 59.2 34.2 47 1403-1452 1169-1218(1293)
45 COG1196 Smc Chromosome segrega 97.0 3.6 7.8E-05 58.0 44.2 15 1379-1393 946-960 (1163)
46 KOG1029 Endocytic adaptor prot 97.0 1.1 2.4E-05 56.5 32.0 10 1442-1451 1053-1062(1118)
47 KOG0933 Structural maintenance 96.9 0.22 4.8E-06 64.4 26.1 31 125-178 20-50 (1174)
48 PF12718 Tropomyosin_1: Tropom 96.9 0.13 2.8E-06 53.8 20.2 126 888-1045 13-138 (143)
49 KOG0996 Structural maintenance 96.9 1.1 2.5E-05 59.3 32.2 10 721-730 250-259 (1293)
50 KOG0164 Myosin class I heavy c 96.8 0.013 2.9E-07 72.2 13.6 20 353-372 248-267 (1001)
51 PF00612 IQ: IQ calmodulin-bin 96.8 0.0013 2.9E-08 45.1 3.0 19 785-803 2-20 (21)
52 KOG2128 Ras GTPase-activating 96.7 0.028 6.1E-07 74.9 16.8 117 763-879 511-646 (1401)
53 KOG2128 Ras GTPase-activating 96.7 0.032 6.9E-07 74.4 17.2 114 742-855 513-645 (1401)
54 TIGR02168 SMC_prok_B chromosom 96.7 1 2.2E-05 63.6 34.0 18 151-168 25-42 (1179)
55 KOG0995 Centromere-associated 96.6 0.53 1.1E-05 58.2 25.5 40 989-1028 441-480 (581)
56 PF07888 CALCOCO1: Calcium bin 96.6 0.39 8.5E-06 59.9 24.4 79 972-1050 370-452 (546)
57 PF08317 Spc7: Spc7 kinetochor 96.6 0.38 8.2E-06 57.7 24.0 80 972-1051 208-291 (325)
58 KOG4229 Myosin VII, myosin IXB 96.5 0.0011 2.4E-08 87.7 2.5 117 605-721 644-761 (1062)
59 KOG1853 LIS1-interacting prote 96.4 0.54 1.2E-05 51.8 21.3 41 1011-1051 136-179 (333)
60 PRK09039 hypothetical protein; 96.4 0.39 8.4E-06 57.9 22.6 68 973-1040 116-183 (343)
61 PRK02224 chromosome segregatio 96.3 4 8.6E-05 56.0 35.0 12 716-727 132-143 (880)
62 COG1579 Zn-ribbon protein, pos 96.3 1 2.2E-05 50.9 23.4 38 974-1011 90-127 (239)
63 PF00612 IQ: IQ calmodulin-bin 96.3 0.0045 9.8E-08 42.5 3.2 19 737-755 2-20 (21)
64 PF14662 CCDC155: Coiled-coil 96.3 1.3 2.7E-05 47.9 22.9 79 973-1051 102-187 (193)
65 PRK09039 hypothetical protein; 96.3 0.35 7.6E-06 58.2 21.4 23 888-910 52-74 (343)
66 PRK02224 chromosome segregatio 96.3 1.8 3.8E-05 59.4 31.1 14 1036-1049 412-425 (880)
67 PF07888 CALCOCO1: Calcium bin 96.3 0.63 1.4E-05 58.2 23.7 15 662-676 42-56 (546)
68 COG4942 Membrane-bound metallo 96.3 1.4 3.1E-05 53.3 25.9 16 890-905 60-75 (420)
69 PF12128 DUF3584: Protein of u 96.3 10 0.00022 53.7 43.4 27 1445-1472 1054-1081(1201)
70 PHA02562 46 endonuclease subun 96.3 0.8 1.7E-05 59.3 26.2 73 973-1049 299-371 (562)
71 PHA02562 46 endonuclease subun 96.3 0.59 1.3E-05 60.5 25.0 19 972-990 305-323 (562)
72 PF06785 UPF0242: Uncharacteri 96.2 1.4 3.1E-05 50.7 23.8 81 972-1052 133-224 (401)
73 PF12718 Tropomyosin_1: Tropom 96.2 0.97 2.1E-05 47.4 21.1 51 996-1046 82-132 (143)
74 KOG0163 Myosin class VI heavy 96.1 3.1 6.7E-05 52.5 28.0 56 792-855 781-836 (1259)
75 PF14662 CCDC155: Coiled-coil 96.1 0.75 1.6E-05 49.6 20.1 74 978-1051 65-138 (193)
76 PRK03918 chromosome segregatio 96.1 0.82 1.8E-05 62.6 26.5 18 152-169 26-43 (880)
77 KOG0925 mRNA splicing factor A 96.0 0.0058 1.3E-07 72.8 4.0 56 102-166 24-79 (699)
78 KOG4643 Uncharacterized coiled 95.9 1.3 2.8E-05 57.7 24.4 47 886-932 405-454 (1195)
79 PF15070 GOLGA2L5: Putative go 95.9 0.95 2.1E-05 58.4 23.5 12 1269-1280 415-426 (617)
80 PRK03918 chromosome segregatio 95.9 2 4.4E-05 58.8 28.8 8 717-724 130-137 (880)
81 PF00261 Tropomyosin: Tropomyo 95.9 0.66 1.4E-05 53.0 20.2 35 1013-1047 181-215 (237)
82 PF00261 Tropomyosin: Tropomyo 95.9 0.2 4.3E-06 57.3 15.8 19 975-993 94-112 (237)
83 KOG4643 Uncharacterized coiled 95.9 10 0.00022 50.0 32.2 73 978-1050 262-336 (1195)
84 KOG0999 Microtubule-associated 95.8 1.5 3.3E-05 53.3 22.6 29 921-949 43-71 (772)
85 smart00787 Spc7 Spc7 kinetocho 95.7 1.9 4.1E-05 51.2 23.5 15 1037-1051 272-286 (312)
86 PTZ00014 myosin-A; Provisional 95.7 0.018 4E-07 76.1 7.4 40 786-825 779-818 (821)
87 PF00038 Filament: Intermediat 95.6 6.9 0.00015 46.6 30.7 34 883-916 69-102 (312)
88 COG5185 HEC1 Protein involved 95.6 1.4 3.1E-05 52.7 21.5 39 992-1030 485-523 (622)
89 COG4372 Uncharacterized protei 95.6 6.6 0.00014 46.3 28.5 64 973-1036 210-280 (499)
90 KOG0977 Nuclear envelope prote 95.6 0.98 2.1E-05 56.5 21.3 24 742-765 47-70 (546)
91 KOG0976 Rho/Rac1-interacting s 95.6 10 0.00022 48.5 30.1 18 891-908 286-303 (1265)
92 PF12128 DUF3584: Protein of u 95.6 18 0.00039 51.2 39.8 24 1452-1477 1154-1177(1201)
93 COG1579 Zn-ribbon protein, pos 95.6 2.3 5.1E-05 48.1 22.2 47 973-1019 96-142 (239)
94 KOG0980 Actin-binding protein 95.6 7.4 0.00016 50.6 28.6 12 1433-1444 933-944 (980)
95 COG3883 Uncharacterized protei 95.5 3.2 7E-05 47.5 23.1 68 881-952 37-104 (265)
96 KOG0976 Rho/Rac1-interacting s 95.5 11 0.00025 48.1 30.8 51 1000-1050 255-305 (1265)
97 PRK04863 mukB cell division pr 95.4 22 0.00047 51.0 37.9 9 713-721 182-190 (1486)
98 PF15070 GOLGA2L5: Putative go 95.4 13 0.00028 48.3 31.2 11 894-904 92-102 (617)
99 smart00015 IQ Short calmodulin 95.4 0.014 3.1E-07 42.3 2.8 21 784-804 3-23 (26)
100 COG4372 Uncharacterized protei 95.4 6.1 0.00013 46.6 24.8 10 1292-1301 471-480 (499)
101 PF08317 Spc7: Spc7 kinetochor 95.3 3.8 8.1E-05 49.3 24.6 8 671-678 14-21 (325)
102 TIGR02168 SMC_prok_B chromosom 95.3 22 0.00048 50.3 48.7 15 1458-1472 1123-1137(1179)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.3 2.5 5.5E-05 43.7 20.0 34 1019-1052 95-128 (132)
104 TIGR00606 rad50 rad50. This fa 95.3 5 0.00011 57.4 29.5 21 150-170 29-49 (1311)
105 TIGR00606 rad50 rad50. This fa 95.2 1.4 3.1E-05 62.6 24.2 8 306-313 140-147 (1311)
106 PF15397 DUF4618: Domain of un 95.2 7.7 0.00017 44.4 25.9 35 1019-1053 190-224 (258)
107 KOG1853 LIS1-interacting prote 95.2 4.5 9.9E-05 44.9 21.9 25 1027-1051 162-186 (333)
108 PF10473 CENP-F_leu_zip: Leuci 95.1 1.7 3.6E-05 45.2 17.8 10 927-936 23-32 (140)
109 PF05667 DUF812: Protein of un 95.1 1.3 2.8E-05 57.0 20.8 40 1011-1050 443-482 (594)
110 COG1196 Smc Chromosome segrega 95.1 25 0.00054 49.8 46.4 10 432-441 5-14 (1163)
111 PRK01156 chromosome segregatio 95.1 2 4.4E-05 58.9 24.4 23 1323-1345 732-754 (895)
112 PF15619 Lebercilin: Ciliary p 95.1 6 0.00013 43.7 23.2 29 976-1004 121-149 (194)
113 TIGR03185 DNA_S_dndD DNA sulfu 95.0 6.6 0.00014 51.9 27.8 41 1008-1048 428-468 (650)
114 PF04849 HAP1_N: HAP1 N-termin 95.0 4.3 9.4E-05 47.4 22.5 49 991-1039 238-286 (306)
115 COG4942 Membrane-bound metallo 94.9 13 0.00027 45.5 29.2 23 1020-1042 222-244 (420)
116 PF04849 HAP1_N: HAP1 N-termin 94.9 2.7 5.8E-05 49.1 20.6 68 972-1039 233-300 (306)
117 KOG4674 Uncharacterized conser 94.8 30 0.00066 49.4 36.1 78 887-964 764-841 (1822)
118 PF09789 DUF2353: Uncharacteri 94.8 8.6 0.00019 45.5 24.6 133 918-1051 76-218 (319)
119 PF05667 DUF812: Protein of un 94.8 3.4 7.4E-05 53.2 23.3 16 549-566 79-94 (594)
120 KOG4673 Transcription factor T 94.7 17 0.00036 46.0 31.5 54 977-1030 577-634 (961)
121 KOG0980 Actin-binding protein 94.7 20 0.00044 46.9 31.1 11 613-623 205-215 (980)
122 KOG0612 Rho-associated, coiled 94.7 5 0.00011 53.9 24.4 70 979-1048 622-693 (1317)
123 KOG0963 Transcription factor/C 94.7 10 0.00022 47.8 25.8 38 1014-1051 316-359 (629)
124 KOG0995 Centromere-associated 94.6 4.2 9.2E-05 50.6 22.1 35 1006-1040 337-371 (581)
125 KOG0999 Microtubule-associated 94.5 6 0.00013 48.5 22.6 17 1328-1344 620-636 (772)
126 PF14915 CCDC144C: CCDC144C pr 94.4 12 0.00027 43.2 24.4 74 971-1044 219-300 (305)
127 KOG4674 Uncharacterized conser 94.4 30 0.00066 49.4 31.8 63 847-909 659-723 (1822)
128 KOG1003 Actin filament-coating 94.3 6.5 0.00014 42.6 20.1 76 974-1049 110-192 (205)
129 PF09755 DUF2046: Uncharacteri 94.3 14 0.0003 43.2 28.6 15 1037-1051 230-244 (310)
130 PF00038 Filament: Intermediat 94.3 15 0.00033 43.7 33.9 18 889-906 117-134 (312)
131 KOG0977 Nuclear envelope prote 94.3 7.9 0.00017 48.8 23.9 23 922-944 107-129 (546)
132 KOG2991 Splicing regulator [RN 94.2 12 0.00025 42.0 25.9 78 973-1050 217-306 (330)
133 PF08614 ATG16: Autophagy prot 94.2 0.34 7.3E-06 53.7 11.0 65 987-1051 116-180 (194)
134 PF15066 CAGE1: Cancer-associa 94.1 6.1 0.00013 47.8 21.3 16 398-413 50-65 (527)
135 smart00015 IQ Short calmodulin 94.0 0.056 1.2E-06 39.2 2.9 20 736-755 3-22 (26)
136 PRK01156 chromosome segregatio 94.0 5.9 0.00013 54.5 24.9 31 1019-1049 413-443 (895)
137 PF04156 IncA: IncA protein; 94.0 2.5 5.4E-05 46.6 17.4 25 1019-1043 162-186 (191)
138 smart00787 Spc7 Spc7 kinetocho 93.9 18 0.00039 43.1 26.2 9 670-678 9-17 (312)
139 PF04091 Sec15: Exocyst comple 93.9 0.45 9.9E-06 56.6 12.0 133 1317-1450 176-311 (311)
140 KOG0946 ER-Golgi vesicle-tethe 93.9 5 0.00011 51.6 21.0 80 972-1051 736-821 (970)
141 KOG4593 Mitotic checkpoint pro 93.9 22 0.00047 45.6 26.5 21 831-851 85-105 (716)
142 KOG0612 Rho-associated, coiled 93.8 31 0.00068 46.8 28.8 37 543-579 212-253 (1317)
143 PF15619 Lebercilin: Ciliary p 93.8 13 0.00029 41.1 23.5 26 983-1008 121-146 (194)
144 PF05911 DUF869: Plant protein 93.7 9.9 0.00021 50.3 24.4 81 971-1051 118-205 (769)
145 KOG4360 Uncharacterized coiled 93.6 4.8 0.0001 49.2 19.5 76 975-1050 228-303 (596)
146 KOG2129 Uncharacterized conser 93.6 15 0.00033 43.7 22.9 23 974-996 254-276 (552)
147 TIGR01843 type_I_hlyD type I s 93.6 7.1 0.00015 48.4 22.7 22 1029-1050 246-267 (423)
148 PF05010 TACC: Transforming ac 93.6 15 0.00032 41.0 23.4 30 1019-1048 165-194 (207)
149 PF13851 GAS: Growth-arrest sp 93.6 7.2 0.00016 43.5 19.9 33 976-1008 96-128 (201)
150 PF13207 AAA_17: AAA domain; P 93.5 0.049 1.1E-06 55.0 2.7 23 151-173 1-23 (121)
151 PF10473 CENP-F_leu_zip: Leuci 93.5 6.9 0.00015 40.8 18.1 37 985-1021 78-114 (140)
152 KOG0946 ER-Golgi vesicle-tethe 93.5 15 0.00033 47.4 24.3 29 553-581 389-417 (970)
153 KOG4360 Uncharacterized coiled 93.4 2.5 5.4E-05 51.5 16.7 9 1335-1343 507-515 (596)
154 KOG0964 Structural maintenance 93.3 13 0.00027 49.0 23.5 35 269-303 126-160 (1200)
155 KOG1103 Predicted coiled-coil 93.3 6.3 0.00014 45.5 18.8 48 1003-1050 247-294 (561)
156 COG3883 Uncharacterized protei 93.3 12 0.00026 43.0 21.2 59 882-944 45-103 (265)
157 PF05701 WEMBL: Weak chloropla 93.2 12 0.00027 47.9 24.1 26 1019-1044 390-415 (522)
158 PF15254 CCDC14: Coiled-coil d 93.2 20 0.00044 46.3 24.8 65 979-1050 493-557 (861)
159 KOG4593 Mitotic checkpoint pro 93.2 34 0.00073 44.0 32.6 64 872-935 141-204 (716)
160 PF10168 Nup88: Nuclear pore c 93.1 7.5 0.00016 51.4 22.2 21 621-641 421-441 (717)
161 PRK10884 SH3 domain-containing 93.1 1.1 2.4E-05 49.8 12.6 76 973-1051 93-168 (206)
162 PF05483 SCP-1: Synaptonemal c 93.0 17 0.00037 46.3 23.4 171 875-1051 450-623 (786)
163 KOG0994 Extracellular matrix g 92.8 48 0.001 44.7 38.5 36 85-121 193-229 (1758)
164 KOG1003 Actin filament-coating 92.6 18 0.00038 39.4 21.7 71 977-1047 127-197 (205)
165 PF05701 WEMBL: Weak chloropla 92.6 19 0.00042 46.1 24.5 28 1022-1049 302-329 (522)
166 KOG0964 Structural maintenance 92.4 14 0.00031 48.5 22.2 23 889-911 300-322 (1200)
167 PF07111 HCR: Alpha helical co 92.4 22 0.00047 45.7 23.4 13 1024-1036 244-256 (739)
168 TIGR02680 conserved hypothetic 92.4 57 0.0012 46.9 30.9 27 150-176 25-51 (1353)
169 PF13401 AAA_22: AAA domain; P 92.4 0.083 1.8E-06 53.9 2.5 29 147-175 2-30 (131)
170 PF09730 BicD: Microtubule-ass 92.3 16 0.00035 47.8 23.0 58 990-1047 124-181 (717)
171 PRK10929 putative mechanosensi 92.2 19 0.00042 49.7 24.8 22 1345-1366 699-720 (1109)
172 PF04111 APG6: Autophagy prote 92.2 0.84 1.8E-05 54.3 10.9 13 1321-1333 289-301 (314)
173 KOG0979 Structural maintenance 92.1 22 0.00048 47.3 23.7 22 1106-1127 476-497 (1072)
174 KOG0982 Centrosomal protein Nu 92.1 14 0.0003 44.4 20.0 75 977-1051 315-389 (502)
175 PF13191 AAA_16: AAA ATPase do 92.0 0.098 2.1E-06 56.7 2.8 34 143-176 18-51 (185)
176 TIGR01843 type_I_hlyD type I s 92.0 16 0.00035 45.3 22.7 24 1021-1044 245-268 (423)
177 PF10481 CENP-F_N: Cenp-F N-te 92.0 6.5 0.00014 44.5 16.4 71 975-1052 62-132 (307)
178 KOG0249 LAR-interacting protei 91.8 6.7 0.00014 49.7 17.9 20 1369-1396 756-775 (916)
179 KOG0982 Centrosomal protein Nu 91.7 37 0.0008 41.0 23.0 14 1038-1051 405-418 (502)
180 KOG1937 Uncharacterized conser 91.6 25 0.00053 42.7 21.4 34 1019-1052 386-419 (521)
181 PF04111 APG6: Autophagy prote 91.5 2.2 4.8E-05 50.8 13.4 74 977-1050 47-120 (314)
182 PF13238 AAA_18: AAA domain; P 91.5 0.12 2.6E-06 52.4 2.5 22 152-173 1-22 (129)
183 KOG0018 Structural maintenance 91.5 66 0.0014 43.4 35.6 39 785-823 211-249 (1141)
184 TIGR03015 pepcterm_ATPase puta 91.4 0.18 3.9E-06 58.5 4.2 28 147-174 41-68 (269)
185 PF10168 Nup88: Nuclear pore c 91.4 6.9 0.00015 51.7 18.9 13 541-553 377-389 (717)
186 KOG1937 Uncharacterized conser 91.4 18 0.00039 43.8 20.2 38 1013-1050 387-424 (521)
187 cd00009 AAA The AAA+ (ATPases 91.3 0.23 5.1E-06 50.7 4.5 29 146-174 16-44 (151)
188 TIGR02322 phosphon_PhnN phosph 91.2 0.14 3E-06 55.7 2.8 25 150-174 2-26 (179)
189 cd02019 NK Nucleoside/nucleoti 91.2 0.16 3.6E-06 46.1 2.7 22 152-173 2-23 (69)
190 PF08614 ATG16: Autophagy prot 91.1 2.5 5.4E-05 46.8 12.6 69 971-1039 114-182 (194)
191 TIGR03007 pepcterm_ChnLen poly 91.1 18 0.00038 46.2 22.1 15 973-987 254-268 (498)
192 COG2433 Uncharacterized conser 91.1 2.2 4.7E-05 53.3 12.9 79 972-1050 428-509 (652)
193 PF10186 Atg14: UV radiation r 91.1 7.1 0.00015 46.0 17.4 76 974-1049 71-146 (302)
194 PF10481 CENP-F_N: Cenp-F N-te 91.1 9.5 0.00021 43.2 16.5 63 990-1052 63-125 (307)
195 KOG0994 Extracellular matrix g 91.1 72 0.0016 43.1 36.7 40 1011-1050 1706-1745(1758)
196 COG5185 HEC1 Protein involved 90.7 48 0.001 40.5 25.5 40 1006-1045 373-412 (622)
197 PRK07196 fliI flagellum-specif 90.7 0.3 6.6E-06 60.2 5.3 42 132-173 138-179 (434)
198 KOG0018 Structural maintenance 90.7 77 0.0017 42.8 28.0 42 629-674 29-75 (1141)
199 PF10174 Cast: RIM-binding pro 90.7 74 0.0016 42.6 33.4 78 973-1050 465-542 (775)
200 PF00769 ERM: Ezrin/radixin/mo 90.6 10 0.00023 43.5 17.3 37 1009-1045 76-112 (246)
201 COG0444 DppD ABC-type dipeptid 90.5 0.15 3.2E-06 59.5 2.3 28 147-174 29-56 (316)
202 TIGR00150 HI0065_YjeE ATPase, 90.5 0.35 7.7E-06 50.0 4.8 27 147-173 20-46 (133)
203 PF09789 DUF2353: Uncharacteri 90.4 31 0.00067 40.9 20.9 82 971-1052 77-170 (319)
204 PRK09270 nucleoside triphospha 90.3 0.43 9.3E-06 54.3 5.8 34 145-178 29-62 (229)
205 PF00004 AAA: ATPase family as 90.2 0.18 3.8E-06 51.3 2.4 23 152-174 1-23 (132)
206 KOG0963 Transcription factor/C 90.2 64 0.0014 41.1 27.1 11 674-684 87-97 (629)
207 PRK11281 hypothetical protein; 90.1 16 0.00035 50.6 21.0 21 1031-1051 287-307 (1113)
208 TIGR01005 eps_transp_fam exopo 90.1 55 0.0012 44.2 26.3 12 696-707 85-96 (754)
209 cd01918 HprK_C HprK/P, the bif 90.0 0.22 4.8E-06 52.4 2.9 25 148-172 13-37 (149)
210 PRK13833 conjugal transfer pro 90.0 0.29 6.4E-06 58.2 4.3 34 140-175 137-170 (323)
211 COG0419 SbcC ATPase involved i 90.0 92 0.002 43.1 28.7 39 1323-1361 739-777 (908)
212 PRK04778 septation ring format 90.0 37 0.00081 44.1 23.7 62 975-1036 350-411 (569)
213 PRK05480 uridine/cytidine kina 89.9 0.25 5.3E-06 55.3 3.4 27 147-173 4-30 (209)
214 cd00820 PEPCK_HprK Phosphoenol 89.9 0.24 5.1E-06 49.2 2.8 23 148-170 14-36 (107)
215 PF13851 GAS: Growth-arrest sp 89.9 35 0.00077 38.0 20.1 6 1038-1043 116-121 (201)
216 cd01131 PilT Pilus retraction 89.8 0.21 4.6E-06 55.5 2.7 25 151-175 3-27 (198)
217 PRK06696 uridine kinase; Valid 89.8 0.38 8.1E-06 54.5 4.8 40 134-175 9-48 (223)
218 PRK00300 gmk guanylate kinase; 89.8 0.21 4.6E-06 55.5 2.7 26 148-173 4-29 (205)
219 TIGR01005 eps_transp_fam exopo 89.8 29 0.00062 46.9 23.3 18 973-990 288-305 (754)
220 COG0194 Gmk Guanylate kinase [ 89.6 0.21 4.6E-06 53.9 2.4 25 149-173 4-28 (191)
221 PRK10361 DNA recombination pro 89.5 67 0.0015 40.3 25.2 169 866-1067 24-196 (475)
222 cd02023 UMPK Uridine monophosp 89.5 0.23 5E-06 55.0 2.7 22 152-173 2-23 (198)
223 KOG0979 Structural maintenance 89.4 34 0.00073 45.7 21.8 38 1008-1045 318-355 (1072)
224 cd01129 PulE-GspE PulE/GspE Th 89.4 0.36 7.9E-06 56.1 4.4 35 140-175 72-106 (264)
225 PF00485 PRK: Phosphoribulokin 89.2 0.23 5.1E-06 54.8 2.5 26 152-177 2-27 (194)
226 PRK12402 replication factor C 89.0 0.48 1E-05 56.9 5.2 56 117-174 6-61 (337)
227 PF08826 DMPK_coil: DMPK coile 88.9 5.6 0.00012 35.3 10.2 45 999-1043 16-60 (61)
228 PF01583 APS_kinase: Adenylyls 88.9 0.4 8.7E-06 50.9 3.8 29 149-177 2-30 (156)
229 TIGR02977 phageshock_pspA phag 88.7 47 0.001 37.5 21.6 76 971-1046 97-183 (219)
230 PF04437 RINT1_TIP1: RINT-1 / 88.7 13 0.00029 47.3 18.1 124 1318-1447 353-491 (494)
231 COG3074 Uncharacterized protei 88.7 3.8 8.3E-05 36.5 8.8 36 1016-1051 26-61 (79)
232 TIGR03420 DnaA_homol_Hda DnaA 88.7 0.6 1.3E-05 52.6 5.4 38 138-175 27-64 (226)
233 PF06160 EzrA: Septation ring 88.6 90 0.0019 40.6 31.0 27 1024-1050 308-334 (560)
234 TIGR00235 udk uridine kinase. 88.6 0.34 7.5E-06 54.1 3.3 28 147-174 4-31 (207)
235 smart00382 AAA ATPases associa 88.6 0.27 5.9E-06 49.7 2.3 28 149-176 2-29 (148)
236 COG1340 Uncharacterized archae 88.6 56 0.0012 38.2 28.6 13 976-988 161-173 (294)
237 PF09304 Cortex-I_coil: Cortex 88.5 14 0.0003 36.4 13.4 60 974-1033 17-76 (107)
238 PHA02544 44 clamp loader, smal 88.5 0.45 9.7E-06 56.8 4.4 55 117-173 12-67 (316)
239 PF00769 ERM: Ezrin/radixin/mo 88.5 14 0.00031 42.5 16.2 8 1029-1036 103-110 (246)
240 PF10146 zf-C4H2: Zinc finger- 88.4 17 0.00037 41.3 16.5 33 1019-1051 71-103 (230)
241 COG4026 Uncharacterized protei 88.4 4.9 0.00011 43.9 11.4 37 975-1011 144-180 (290)
242 PRK08972 fliI flagellum-specif 88.3 0.82 1.8E-05 56.3 6.4 40 132-171 145-184 (444)
243 TIGR02173 cyt_kin_arch cytidyl 88.2 0.29 6.4E-06 52.4 2.4 23 151-173 2-24 (171)
244 PTZ00121 MAEBL; Provisional 88.2 1.3E+02 0.0028 42.0 35.5 33 65-97 162-194 (2084)
245 PRK08233 hypothetical protein; 88.2 0.27 5.9E-06 53.3 2.1 25 150-174 4-28 (182)
246 PF15397 DUF4618: Domain of un 88.2 55 0.0012 37.7 24.3 30 1022-1051 186-215 (258)
247 PTZ00301 uridine kinase; Provi 88.1 0.33 7.2E-06 54.4 2.8 23 152-174 6-28 (210)
248 PF10186 Atg14: UV radiation r 88.1 11 0.00024 44.5 15.8 79 972-1050 62-140 (302)
249 COG1660 Predicted P-loop-conta 88.1 0.28 6.1E-06 55.3 2.1 19 151-169 3-21 (286)
250 cd02020 CMPK Cytidine monophos 88.1 0.34 7.4E-06 50.4 2.7 22 152-173 2-23 (147)
251 cd02025 PanK Pantothenate kina 88.0 0.33 7.3E-06 54.8 2.7 24 152-175 2-25 (220)
252 cd02028 UMPK_like Uridine mono 87.9 0.36 7.7E-06 52.8 2.8 24 152-175 2-25 (179)
253 PRK04778 septation ring format 87.8 1E+02 0.0022 40.2 33.4 30 1020-1049 381-410 (569)
254 PRK07261 topology modulation p 87.7 0.37 8.1E-06 52.2 2.8 23 151-173 2-24 (171)
255 PF15254 CCDC14: Coiled-coil d 87.5 27 0.00058 45.2 18.7 38 1013-1050 513-550 (861)
256 KOG0804 Cytoplasmic Zn-finger 87.5 19 0.0004 43.8 16.5 12 659-670 104-115 (493)
257 PRK05541 adenylylsulfate kinas 87.5 0.4 8.6E-06 52.0 2.8 29 147-175 5-33 (176)
258 PF07724 AAA_2: AAA domain (Cd 87.4 0.45 9.7E-06 51.6 3.1 24 151-174 5-28 (171)
259 PRK08118 topology modulation p 87.3 0.42 9.2E-06 51.6 2.9 25 150-174 2-26 (167)
260 cd01130 VirB11-like_ATPase Typ 87.3 0.37 8E-06 52.9 2.5 25 149-173 25-49 (186)
261 PF06785 UPF0242: Uncharacteri 87.2 62 0.0013 38.0 19.6 18 1134-1151 307-324 (401)
262 PRK06762 hypothetical protein; 87.1 0.48 1E-05 50.8 3.2 24 150-173 3-26 (166)
263 PF00910 RNA_helicase: RNA hel 87.1 0.41 8.9E-06 47.5 2.4 25 152-176 1-25 (107)
264 PF03668 ATP_bind_2: P-loop AT 87.0 0.38 8.3E-06 55.6 2.4 20 150-169 2-21 (284)
265 COG1382 GimC Prefoldin, chaper 87.0 15 0.00032 37.1 13.1 38 1012-1049 74-111 (119)
266 PRK00131 aroK shikimate kinase 86.9 0.5 1.1E-05 50.7 3.2 26 148-173 3-28 (175)
267 cd00227 CPT Chloramphenicol (C 86.9 0.48 1.1E-05 51.4 3.1 25 149-173 2-26 (175)
268 PRK14737 gmk guanylate kinase; 86.9 0.39 8.5E-06 52.8 2.4 25 149-173 4-28 (186)
269 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.9 42 0.0009 34.8 17.3 63 974-1039 67-129 (132)
270 PRK06547 hypothetical protein; 86.8 0.84 1.8E-05 49.5 4.8 29 145-173 11-39 (172)
271 PF05729 NACHT: NACHT domain 86.7 0.51 1.1E-05 49.9 3.2 26 151-176 2-27 (166)
272 KOG0978 E3 ubiquitin ligase in 86.6 1.2E+02 0.0026 39.8 37.4 69 983-1051 548-616 (698)
273 TIGR02782 TrbB_P P-type conjug 86.6 0.46 1E-05 56.3 2.9 27 149-175 132-158 (299)
274 PF12846 AAA_10: AAA-like doma 86.5 0.51 1.1E-05 55.4 3.3 29 149-177 1-29 (304)
275 PF10174 Cast: RIM-binding pro 86.5 1.3E+02 0.0029 40.3 33.0 77 971-1048 512-588 (775)
276 PRK08472 fliI flagellum-specif 86.5 1.9 4.1E-05 53.4 8.2 42 132-173 140-181 (434)
277 PF14197 Cep57_CLD_2: Centroso 86.5 6.9 0.00015 35.7 9.7 63 977-1039 2-64 (69)
278 TIGR01420 pilT_fam pilus retra 86.3 0.45 9.7E-06 57.6 2.7 26 149-174 122-147 (343)
279 PRK10078 ribose 1,5-bisphospho 86.3 0.4 8.6E-06 52.6 2.0 24 150-173 3-26 (186)
280 PLN03188 kinesin-12 family pro 86.3 1.1E+02 0.0024 42.4 24.2 36 131-166 148-183 (1320)
281 PLN03025 replication factor C 86.2 0.83 1.8E-05 54.7 4.9 56 117-174 4-59 (319)
282 cd00071 GMPK Guanosine monopho 86.2 0.4 8.7E-06 49.9 1.9 22 152-173 2-23 (137)
283 PRK14961 DNA polymerase III su 86.1 1 2.3E-05 54.9 5.7 56 117-174 7-63 (363)
284 KOG4809 Rab6 GTPase-interactin 86.1 76 0.0017 39.6 20.7 11 925-935 342-352 (654)
285 PRK07721 fliI flagellum-specif 86.1 2.5 5.3E-05 52.7 8.9 42 132-173 141-182 (438)
286 cd02024 NRK1 Nicotinamide ribo 86.0 0.46 1E-05 52.2 2.3 22 152-173 2-23 (187)
287 PRK08084 DNA replication initi 85.9 1 2.3E-05 51.4 5.3 40 136-175 32-71 (235)
288 PRK13900 type IV secretion sys 85.9 0.69 1.5E-05 55.5 4.0 31 142-174 155-185 (332)
289 TIGR02928 orc1/cdc6 family rep 85.8 0.73 1.6E-05 56.1 4.3 35 141-175 32-66 (365)
290 TIGR01313 therm_gnt_kin carboh 85.8 0.41 8.9E-06 51.1 1.8 23 152-174 1-23 (163)
291 TIGR01000 bacteriocin_acc bact 85.7 52 0.0011 41.6 20.7 25 1026-1050 288-312 (457)
292 COG4172 ABC-type uncharacteriz 85.6 0.43 9.2E-06 56.9 1.9 28 149-176 36-63 (534)
293 TIGR02524 dot_icm_DotB Dot/Icm 85.5 0.53 1.2E-05 57.1 2.8 28 148-175 133-160 (358)
294 KOG1899 LAR transmembrane tyro 85.5 30 0.00065 43.5 17.1 82 1374-1477 706-799 (861)
295 PRK00889 adenylylsulfate kinas 85.4 0.83 1.8E-05 49.5 4.0 29 148-176 3-31 (175)
296 KOG4809 Rab6 GTPase-interactin 85.4 74 0.0016 39.7 20.1 35 882-916 331-365 (654)
297 PRK14738 gmk guanylate kinase; 85.3 0.59 1.3E-05 52.3 2.9 26 147-172 11-36 (206)
298 KOG0243 Kinesin-like protein [ 85.3 53 0.0012 44.5 20.5 15 311-325 104-118 (1041)
299 PRK06315 type III secretion sy 85.3 1.3 2.8E-05 55.0 5.9 35 139-173 154-188 (442)
300 PF13870 DUF4201: Domain of un 85.2 58 0.0013 35.5 18.2 32 974-1005 43-74 (177)
301 cd01120 RecA-like_NTPases RecA 85.1 0.69 1.5E-05 48.6 3.1 24 152-175 2-25 (165)
302 PF13870 DUF4201: Domain of un 85.1 63 0.0014 35.2 23.6 29 977-1005 88-116 (177)
303 PF09755 DUF2046: Uncharacteri 85.0 88 0.0019 36.9 32.8 12 1039-1050 264-275 (310)
304 COG2433 Uncharacterized conser 84.9 14 0.00031 46.5 14.3 10 696-705 302-311 (652)
305 KOG1962 B-cell receptor-associ 84.9 6.2 0.00014 43.8 10.3 25 1027-1051 184-208 (216)
306 PF11559 ADIP: Afadin- and alp 84.9 15 0.00033 38.9 13.1 59 977-1035 63-121 (151)
307 TIGR03263 guanyl_kin guanylate 84.8 0.48 1E-05 51.5 1.8 24 150-173 2-25 (180)
308 PRK10929 putative mechanosensi 84.8 85 0.0018 43.7 22.9 23 975-997 175-197 (1109)
309 PLN02939 transferase, transfer 84.8 76 0.0017 43.2 21.9 15 1175-1189 610-624 (977)
310 COG4608 AppF ABC-type oligopep 84.8 0.58 1.3E-05 53.6 2.4 31 147-177 37-67 (268)
311 COG0572 Udk Uridine kinase [Nu 84.7 0.63 1.4E-05 51.9 2.7 23 152-174 11-33 (218)
312 PF03962 Mnd1: Mnd1 family; I 84.7 8.6 0.00019 42.4 11.4 79 973-1052 69-151 (188)
313 cd02027 APSK Adenosine 5'-phos 84.6 0.68 1.5E-05 48.9 2.8 24 152-175 2-25 (149)
314 PRK12704 phosphodiesterase; Pr 84.6 1.3E+02 0.0029 38.6 24.3 15 1158-1172 285-299 (520)
315 TIGR00554 panK_bact pantothena 84.6 1.2 2.7E-05 52.3 5.1 29 147-175 60-88 (290)
316 TIGR02525 plasmid_TraJ plasmid 84.6 0.63 1.4E-05 56.6 2.8 27 149-175 149-175 (372)
317 PF13245 AAA_19: Part of AAA d 84.5 1.1 2.4E-05 41.7 3.8 28 148-175 9-36 (76)
318 PF00437 T2SE: Type II/IV secr 84.5 0.74 1.6E-05 53.7 3.3 28 148-175 126-153 (270)
319 PF09730 BicD: Microtubule-ass 84.5 98 0.0021 40.9 22.2 47 974-1020 98-147 (717)
320 PRK10751 molybdopterin-guanine 84.3 0.72 1.6E-05 50.0 2.8 26 151-176 8-33 (173)
321 TIGR00634 recN DNA repair prot 84.3 1.1E+02 0.0023 39.9 23.1 29 1023-1051 347-375 (563)
322 PRK00440 rfc replication facto 84.2 1.1 2.5E-05 53.2 4.8 55 118-174 9-63 (319)
323 PRK13851 type IV secretion sys 84.2 0.52 1.1E-05 56.8 1.9 26 149-174 162-187 (344)
324 KOG2991 Splicing regulator [RN 84.2 80 0.0017 35.7 22.7 40 997-1036 239-278 (330)
325 cd00464 SK Shikimate kinase (S 84.2 0.66 1.4E-05 48.8 2.5 23 151-173 1-23 (154)
326 PRK06217 hypothetical protein; 84.1 0.64 1.4E-05 50.9 2.4 23 151-173 3-25 (183)
327 COG1102 Cmk Cytidylate kinase 84.1 0.76 1.7E-05 48.5 2.7 23 152-174 3-25 (179)
328 PRK12377 putative replication 84.1 1.4 2.9E-05 50.8 5.1 44 131-176 85-128 (248)
329 smart00333 TUDOR Tudor domain. 84.1 3.2 7E-05 35.9 6.3 51 6-56 2-54 (57)
330 PRK00411 cdc6 cell division co 84.0 1.1 2.3E-05 55.3 4.5 33 143-175 49-81 (394)
331 PRK14956 DNA polymerase III su 83.8 1.3 2.8E-05 55.4 5.0 54 118-175 10-66 (484)
332 PF05911 DUF869: Plant protein 83.8 98 0.0021 41.4 22.1 63 975-1037 101-163 (769)
333 PRK03846 adenylylsulfate kinas 83.8 1.3 2.7E-05 49.2 4.6 32 145-176 20-51 (198)
334 PF01576 Myosin_tail_1: Myosin 83.7 0.34 7.3E-06 65.4 0.0 79 973-1051 426-504 (859)
335 PF05557 MAD: Mitotic checkpoi 83.6 0.34 7.4E-06 64.5 0.0 9 1442-1450 655-663 (722)
336 PF13671 AAA_33: AAA domain; P 83.5 0.61 1.3E-05 48.4 1.8 23 152-174 2-24 (143)
337 PTZ00112 origin recognition co 83.4 1.7 3.7E-05 57.1 5.9 45 132-176 764-808 (1164)
338 KOG4403 Cell surface glycoprot 83.2 78 0.0017 38.3 18.6 140 889-1048 235-409 (575)
339 PF10226 DUF2216: Uncharacteri 83.2 24 0.00052 38.2 13.3 33 1019-1051 105-137 (195)
340 PRK14964 DNA polymerase III su 83.2 1.1 2.4E-05 56.3 4.2 57 117-176 4-62 (491)
341 COG0419 SbcC ATPase involved i 83.2 2.1E+02 0.0045 39.7 28.8 36 1013-1048 408-443 (908)
342 TIGR02902 spore_lonB ATP-depen 83.2 1.3 2.7E-05 56.9 4.8 30 144-173 81-110 (531)
343 PF03266 NTPase_1: NTPase; In 83.1 0.84 1.8E-05 49.3 2.8 24 152-175 2-25 (168)
344 PF10146 zf-C4H2: Zinc finger- 83.1 45 0.00097 38.0 16.4 63 975-1044 41-103 (230)
345 PRK15422 septal ring assembly 83.1 21 0.00045 33.2 11.0 24 1027-1050 37-60 (79)
346 PRK08903 DnaA regulatory inact 83.0 1.6 3.5E-05 49.4 5.1 29 147-175 40-68 (227)
347 PF05010 TACC: Transforming ac 83.0 86 0.0019 35.1 22.6 26 1016-1041 176-201 (207)
348 PRK06645 DNA polymerase III su 82.9 1.4 3E-05 55.9 4.9 56 118-176 13-70 (507)
349 PF10234 Cluap1: Clusterin-ass 82.8 37 0.00079 39.4 15.7 66 974-1039 170-235 (267)
350 KOG1962 B-cell receptor-associ 82.7 13 0.00029 41.4 11.6 59 978-1036 149-207 (216)
351 cd02029 PRK_like Phosphoribulo 82.7 0.95 2.1E-05 52.1 3.1 24 152-175 2-25 (277)
352 PRK13764 ATPase; Provisional 82.7 1 2.2E-05 57.8 3.7 27 149-175 257-283 (602)
353 TIGR01000 bacteriocin_acc bact 82.5 1.3E+02 0.0028 38.1 22.2 15 1035-1049 290-304 (457)
354 PF11559 ADIP: Afadin- and alp 82.5 23 0.0005 37.5 13.3 26 978-1003 57-82 (151)
355 PRK10698 phage shock protein P 82.5 95 0.002 35.3 22.1 76 972-1047 98-184 (222)
356 COG2204 AtoC Response regulato 82.4 0.98 2.1E-05 56.0 3.2 64 147-220 162-233 (464)
357 PF03205 MobB: Molybdopterin g 82.4 1 2.2E-05 47.2 2.9 27 151-177 2-28 (140)
358 PRK05896 DNA polymerase III su 82.3 1.8 3.9E-05 55.6 5.6 59 116-176 6-65 (605)
359 cd02021 GntK Gluconate kinase 82.3 0.82 1.8E-05 48.0 2.3 22 152-173 2-23 (150)
360 TIGR03017 EpsF chain length de 82.3 91 0.002 39.1 20.9 10 834-843 146-155 (444)
361 COG1125 OpuBA ABC-type proline 82.2 0.79 1.7E-05 51.8 2.1 24 151-174 29-52 (309)
362 KOG0249 LAR-interacting protei 82.2 32 0.0007 44.0 15.8 16 1326-1341 716-731 (916)
363 PRK05057 aroK shikimate kinase 82.1 1 2.2E-05 48.9 2.9 25 149-173 4-28 (172)
364 PF02367 UPF0079: Uncharacteri 82.1 0.97 2.1E-05 46.1 2.6 27 147-173 13-39 (123)
365 PF07475 Hpr_kinase_C: HPr Ser 82.1 0.9 1.9E-05 48.7 2.4 23 149-171 18-40 (171)
366 PRK09111 DNA polymerase III su 82.0 1.1 2.5E-05 57.8 3.8 57 118-176 16-73 (598)
367 PF06818 Fez1: Fez1; InterPro 82.0 88 0.0019 34.7 17.4 10 925-934 35-44 (202)
368 PF07106 TBPIP: Tat binding pr 82.0 14 0.00031 39.8 11.8 64 972-1035 71-136 (169)
369 COG1123 ATPase components of v 81.9 0.74 1.6E-05 57.8 2.0 29 148-176 34-62 (539)
370 PRK13342 recombination factor 81.9 1.5 3.3E-05 54.5 4.7 43 130-173 18-60 (413)
371 TIGR02533 type_II_gspE general 81.8 1.2 2.6E-05 56.4 3.8 35 139-174 233-267 (486)
372 PRK04182 cytidylate kinase; Pr 81.8 0.89 1.9E-05 49.1 2.4 23 151-173 2-24 (180)
373 TIGR02338 gimC_beta prefoldin, 81.8 29 0.00063 34.7 12.9 32 1014-1045 73-104 (110)
374 PRK06002 fliI flagellum-specif 81.7 1.4 3.1E-05 54.5 4.3 33 6-39 46-78 (450)
375 KOG1103 Predicted coiled-coil 81.7 1.1E+02 0.0025 35.7 25.5 46 995-1040 246-291 (561)
376 COG0563 Adk Adenylate kinase a 81.7 1 2.2E-05 49.2 2.7 22 152-173 3-24 (178)
377 PF13166 AAA_13: AAA domain 81.7 1.9E+02 0.0041 38.8 24.7 40 1014-1053 416-455 (712)
378 PF08172 CASP_C: CASP C termin 81.6 11 0.00024 43.3 11.1 42 1009-1050 87-128 (248)
379 PF01576 Myosin_tail_1: Myosin 81.6 0.46 9.9E-06 64.2 0.0 41 879-919 29-69 (859)
380 PRK07667 uridine kinase; Provi 81.6 1.1 2.4E-05 49.5 3.1 26 150-175 18-43 (193)
381 KOG2129 Uncharacterized conser 81.5 1.3E+02 0.0029 36.3 23.6 32 974-1005 247-278 (552)
382 PRK09825 idnK D-gluconate kina 81.5 1.1 2.4E-05 48.8 3.0 26 149-174 3-28 (176)
383 COG2884 FtsE Predicted ATPase 81.4 0.97 2.1E-05 49.0 2.3 24 148-171 27-50 (223)
384 PF13555 AAA_29: P-loop contai 81.4 1.4 3.1E-05 39.2 3.0 20 151-170 25-44 (62)
385 TIGR01360 aden_kin_iso1 adenyl 81.4 1.1 2.3E-05 49.0 2.8 23 151-173 5-27 (188)
386 PF14915 CCDC144C: CCDC144C pr 81.2 1.2E+02 0.0026 35.5 31.2 39 1013-1051 198-236 (305)
387 KOG4460 Nuclear pore complex, 81.1 1.5E+02 0.0033 37.1 20.4 28 1021-1048 708-735 (741)
388 PRK04040 adenylate kinase; Pro 81.0 1.1 2.3E-05 49.5 2.6 24 150-173 3-26 (188)
389 COG1124 DppF ABC-type dipeptid 81.0 1.1 2.4E-05 50.4 2.7 29 147-175 31-59 (252)
390 PF10205 KLRAQ: Predicted coil 81.0 25 0.00054 34.5 11.4 64 983-1046 8-71 (102)
391 PF03215 Rad17: Rad17 cell cyc 80.9 1.4 3.1E-05 55.9 4.0 58 116-173 9-69 (519)
392 PRK05342 clpX ATP-dependent pr 80.9 2 4.4E-05 53.1 5.3 63 111-173 59-132 (412)
393 PRK13894 conjugal transfer ATP 80.9 1.1 2.4E-05 53.5 2.9 27 149-175 148-174 (319)
394 TIGR01026 fliI_yscN ATPase Fli 80.9 2.9 6.4E-05 52.0 6.7 40 133-172 147-186 (440)
395 PRK14732 coaE dephospho-CoA ki 80.9 1.2 2.6E-05 49.4 3.0 48 152-204 2-54 (196)
396 cd03115 SRP The signal recogni 80.7 1.5 3.2E-05 47.4 3.5 27 151-177 2-28 (173)
397 PHA00729 NTP-binding motif con 80.7 2.1 4.5E-05 48.3 4.8 28 147-174 15-42 (226)
398 PRK15453 phosphoribulokinase; 80.6 1.2 2.6E-05 51.7 3.0 25 149-173 5-29 (290)
399 PF07728 AAA_5: AAA domain (dy 80.5 1.1 2.4E-05 46.3 2.5 23 151-173 1-23 (139)
400 PF12777 MT: Microtubule-bindi 80.4 62 0.0013 39.3 17.7 42 1009-1050 229-270 (344)
401 PRK06893 DNA replication initi 80.4 2.3 5.1E-05 48.3 5.2 39 137-176 28-66 (229)
402 cd02034 CooC The accessory pro 80.3 1.5 3.3E-05 44.3 3.3 26 152-177 2-27 (116)
403 TIGR02903 spore_lon_C ATP-depe 80.3 2.2 4.8E-05 55.6 5.6 35 141-175 167-201 (615)
404 PF10212 TTKRSYEDQ: Predicted 80.3 1.7E+02 0.0038 36.9 21.7 66 985-1050 418-483 (518)
405 COG0529 CysC Adenylylsulfate k 80.3 2.2 4.8E-05 45.8 4.5 44 134-178 9-52 (197)
406 COG1493 HprK Serine kinase of 80.3 1.2 2.6E-05 51.5 2.8 23 149-171 145-167 (308)
407 COG4172 ABC-type uncharacteriz 80.2 1 2.2E-05 53.8 2.2 30 147-176 311-340 (534)
408 PRK10246 exonuclease subunit S 80.2 1.9E+02 0.0042 40.6 24.5 22 149-170 30-51 (1047)
409 PRK05416 glmZ(sRNA)-inactivati 80.2 1.1 2.3E-05 52.7 2.4 21 149-169 6-26 (288)
410 TIGR02546 III_secr_ATP type II 80.1 2.8 6.1E-05 52.0 6.1 38 136-173 132-169 (422)
411 PRK06761 hypothetical protein; 80.1 1.1 2.4E-05 52.4 2.4 26 150-175 4-29 (282)
412 KOG4673 Transcription factor T 80.0 1.9E+02 0.0042 37.2 39.8 51 1000-1050 710-760 (961)
413 PRK06936 type III secretion sy 80.0 1.8 3.9E-05 53.5 4.4 42 132-173 145-186 (439)
414 PRK14955 DNA polymerase III su 79.8 2.3 5E-05 52.6 5.3 56 118-175 8-64 (397)
415 PF10498 IFT57: Intra-flagella 79.8 35 0.00076 41.5 15.0 8 638-645 62-69 (359)
416 COG0802 Predicted ATPase or ki 79.6 3 6.5E-05 43.8 5.2 29 147-175 23-51 (149)
417 PRK15422 septal ring assembly 79.6 24 0.00052 32.8 10.1 21 985-1005 23-43 (79)
418 PRK09099 type III secretion sy 79.6 2.5 5.5E-05 52.4 5.5 37 137-173 151-187 (441)
419 PRK09343 prefoldin subunit bet 79.5 41 0.00089 34.3 13.3 39 1012-1050 75-113 (121)
420 PF10267 Tmemb_cc2: Predicted 79.5 70 0.0015 39.3 17.3 22 1021-1042 297-318 (395)
421 PRK04195 replication factor C 79.4 1.6 3.4E-05 55.5 3.7 27 147-173 37-63 (482)
422 PRK14957 DNA polymerase III su 79.3 2.4 5.2E-05 54.1 5.3 55 117-175 7-64 (546)
423 TIGR00455 apsK adenylylsulfate 79.2 1.4 3E-05 48.2 2.8 29 147-175 16-44 (184)
424 PRK08727 hypothetical protein; 79.2 2.6 5.6E-05 48.1 5.1 31 146-176 38-68 (233)
425 PRK14527 adenylate kinase; Pro 79.2 1.5 3.4E-05 48.2 3.2 27 148-174 5-31 (191)
426 PRK11281 hypothetical protein; 79.2 2.9E+02 0.0063 38.8 31.0 36 1016-1051 293-328 (1113)
427 PF00308 Bac_DnaA: Bacterial d 79.0 2.6 5.6E-05 47.6 5.0 41 136-176 19-61 (219)
428 PF11932 DUF3450: Protein of u 79.0 24 0.00051 40.8 12.9 50 978-1027 47-96 (251)
429 cd03293 ABC_NrtD_SsuB_transpor 79.0 1.3 2.8E-05 49.8 2.6 26 147-172 28-53 (220)
430 TIGR03499 FlhF flagellar biosy 78.9 1.7 3.7E-05 51.1 3.6 45 132-176 169-221 (282)
431 PRK04220 2-phosphoglycerate ki 78.9 2.2 4.7E-05 50.2 4.4 27 147-173 90-116 (301)
432 cd04508 TUDOR Tudor domains ar 78.8 4.8 0.0001 33.5 5.3 43 10-52 1-46 (48)
433 KOG0288 WD40 repeat protein Ti 78.8 1E+02 0.0022 37.5 17.5 15 892-906 9-23 (459)
434 PRK08356 hypothetical protein; 78.8 1.2 2.6E-05 49.3 2.2 22 150-171 6-27 (195)
435 PF14197 Cep57_CLD_2: Centroso 78.8 27 0.00058 32.0 10.3 62 985-1046 3-64 (69)
436 TIGR00176 mobB molybdopterin-g 78.8 1.6 3.6E-05 46.4 3.1 26 152-177 2-27 (155)
437 TIGR02788 VirB11 P-type DNA tr 78.8 1.1 2.4E-05 53.4 2.0 25 149-173 144-168 (308)
438 PF02994 Transposase_22: L1 tr 78.7 5.4 0.00012 48.7 7.9 27 1017-1043 146-172 (370)
439 TIGR03497 FliI_clade2 flagella 78.7 3.7 7.9E-05 50.8 6.4 35 138-172 126-160 (413)
440 TIGR02881 spore_V_K stage V sp 78.7 1.6 3.6E-05 50.6 3.3 31 147-177 40-70 (261)
441 KOG2891 Surface glycoprotein [ 78.6 1.3E+02 0.0027 34.3 19.2 28 654-681 107-138 (445)
442 PRK15093 antimicrobial peptide 78.6 1.4 3E-05 53.1 2.8 27 147-173 31-57 (330)
443 COG4619 ABC-type uncharacteriz 78.6 1.3 2.9E-05 46.9 2.2 25 148-172 28-52 (223)
444 TIGR02673 FtsE cell division A 78.6 1.4 3.1E-05 49.3 2.7 27 147-173 26-52 (214)
445 COG2805 PilT Tfp pilus assembl 78.6 1.5 3.2E-05 50.7 2.8 78 87-175 70-151 (353)
446 PRK11308 dppF dipeptide transp 78.5 1.4 3E-05 53.0 2.8 27 147-173 39-65 (327)
447 TIGR00960 3a0501s02 Type II (G 78.5 1.4 3.1E-05 49.4 2.7 27 147-173 27-53 (216)
448 TIGR02868 CydC thiol reductant 78.4 0.86 1.9E-05 58.6 1.0 29 147-175 359-387 (529)
449 PRK14528 adenylate kinase; Pro 78.3 1.6 3.5E-05 47.9 3.0 24 150-173 2-25 (186)
450 PRK06835 DNA replication prote 78.2 3.5 7.6E-05 49.5 6.0 46 131-176 160-210 (329)
451 TIGR01166 cbiO cobalt transpor 78.2 1.5 3.3E-05 48.1 2.8 25 147-171 16-40 (190)
452 PRK15177 Vi polysaccharide exp 78.2 1.5 3.3E-05 49.2 2.8 27 147-173 11-37 (213)
453 PF05557 MAD: Mitotic checkpoi 78.2 0.69 1.5E-05 61.7 0.0 14 1037-1050 306-319 (722)
454 KOG4807 F-actin binding protei 78.1 1.5E+02 0.0032 35.5 18.4 170 877-1047 293-481 (593)
455 PF06160 EzrA: Septation ring 78.1 1.5E+02 0.0032 38.7 20.9 45 973-1017 344-388 (560)
456 PRK14959 DNA polymerase III su 78.0 2.2 4.8E-05 55.0 4.4 55 117-175 7-64 (624)
457 PRK09112 DNA polymerase III su 78.0 2.6 5.7E-05 51.0 4.9 40 136-175 31-71 (351)
458 PRK14974 cell division protein 78.0 3 6.4E-05 50.2 5.3 31 147-177 138-168 (336)
459 PF00005 ABC_tran: ABC transpo 78.0 1.4 3E-05 45.4 2.2 25 148-172 10-34 (137)
460 PRK10416 signal recognition pa 78.0 2 4.3E-05 51.3 3.8 31 147-177 112-142 (318)
461 PF00158 Sigma54_activat: Sigm 78.0 1.4 3E-05 47.7 2.2 25 147-171 20-44 (168)
462 cd03225 ABC_cobalt_CbiO_domain 78.0 1.6 3.4E-05 48.8 2.8 27 147-173 25-51 (211)
463 cd03260 ABC_PstB_phosphate_tra 77.9 1.6 3.4E-05 49.4 2.9 27 147-173 24-50 (227)
464 PRK15079 oligopeptide ABC tran 77.8 1.5 3.2E-05 52.8 2.7 27 147-173 45-71 (331)
465 KOG0056 Heavy metal exporter H 77.8 1.9 4.2E-05 52.5 3.5 41 148-188 563-603 (790)
466 COG2274 SunT ABC-type bacterio 77.8 1.1 2.5E-05 58.8 1.8 31 147-177 497-527 (709)
467 cd03259 ABC_Carb_Solutes_like 77.8 1.6 3.5E-05 48.9 2.8 27 147-173 24-50 (213)
468 cd01124 KaiC KaiC is a circadi 77.6 1.7 3.8E-05 47.2 3.0 27 151-177 1-27 (187)
469 PRK09473 oppD oligopeptide tra 77.6 1.5 3.1E-05 52.9 2.5 27 147-173 40-66 (330)
470 KOG1899 LAR transmembrane tyro 77.6 94 0.002 39.4 17.4 19 888-906 138-156 (861)
471 PF04665 Pox_A32: Poxvirus A32 77.5 1.6 3.4E-05 49.8 2.6 25 151-175 15-39 (241)
472 TIGR00064 ftsY signal recognit 77.5 3.6 7.8E-05 48.1 5.7 46 132-177 46-100 (272)
473 PRK08154 anaerobic benzoate ca 77.4 2.4 5.1E-05 50.6 4.2 48 126-173 106-157 (309)
474 PF00625 Guanylate_kin: Guanyl 77.4 1.8 3.8E-05 47.4 3.0 26 149-174 2-27 (183)
475 PRK14963 DNA polymerase III su 77.4 2.1 4.6E-05 54.3 4.1 56 118-176 6-63 (504)
476 TIGR03752 conj_TIGR03752 integ 77.4 21 0.00045 44.3 12.0 78 972-1049 58-136 (472)
477 cd01983 Fer4_NifH The Fer4_Nif 77.4 2.1 4.5E-05 40.5 3.1 25 152-176 2-26 (99)
478 TIGR00634 recN DNA repair prot 77.4 1.2E+02 0.0025 39.6 19.9 25 1017-1041 348-372 (563)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 77.4 1.6 3.6E-05 48.9 2.8 27 147-173 28-54 (218)
480 PRK10646 ADP-binding protein; 77.3 3.8 8.2E-05 43.5 5.2 25 149-173 28-52 (153)
481 COG1123 ATPase components of v 77.3 1.6 3.4E-05 55.0 2.7 28 148-175 316-343 (539)
482 TIGR03608 L_ocin_972_ABC putat 77.3 1.6 3.5E-05 48.4 2.7 25 148-172 23-47 (206)
483 PRK08116 hypothetical protein; 77.2 3.4 7.5E-05 48.2 5.4 46 131-176 95-141 (268)
484 PRK14962 DNA polymerase III su 77.2 3.1 6.8E-05 52.4 5.4 53 118-174 6-61 (472)
485 PF09787 Golgin_A5: Golgin sub 77.2 2.3E+02 0.0049 36.5 24.9 231 808-1049 177-419 (511)
486 PRK14969 DNA polymerase III su 77.2 2.9 6.3E-05 53.5 5.2 54 118-173 8-62 (527)
487 KOG3684 Ca2+-activated K+ chan 77.1 75 0.0016 39.1 16.3 125 805-940 337-467 (489)
488 PF14073 Cep57_CLD: Centrosome 77.1 1.2E+02 0.0025 33.1 20.6 167 874-1046 3-172 (178)
489 PRK13768 GTPase; Provisional 77.1 1.9 4.1E-05 49.9 3.2 27 151-177 4-30 (253)
490 PRK13341 recombination factor 77.1 2.8 6.1E-05 55.5 5.1 58 116-173 18-76 (725)
491 PF03193 DUF258: Protein of un 77.0 1.9 4.1E-05 46.1 2.9 31 140-170 26-56 (161)
492 cd03229 ABC_Class3 This class 77.0 1.8 3.8E-05 47.1 2.8 24 147-170 24-47 (178)
493 KOG4603 TBP-1 interacting prot 77.0 20 0.00043 37.9 10.0 68 971-1043 77-144 (201)
494 PRK12704 phosphodiesterase; Pr 77.0 2.3E+02 0.005 36.5 23.7 146 885-1047 31-180 (520)
495 PRK12608 transcription termina 77.0 2.2 4.7E-05 51.6 3.7 42 134-175 118-159 (380)
496 TIGR00678 holB DNA polymerase 77.0 3 6.5E-05 45.7 4.6 36 138-173 2-38 (188)
497 cd03296 ABC_CysA_sulfate_impor 77.0 1.7 3.7E-05 49.6 2.8 24 147-170 26-49 (239)
498 TIGR02880 cbbX_cfxQ probable R 76.9 1.8 3.9E-05 50.9 3.0 26 152-177 61-86 (284)
499 KOG4302 Microtubule-associated 76.9 1.6E+02 0.0034 38.6 20.0 169 875-1043 54-261 (660)
500 PRK11022 dppD dipeptide transp 76.8 1.6 3.6E-05 52.3 2.7 24 147-170 31-54 (326)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-239 Score=2218.43 Aligned_cols=1364 Identities=34% Similarity=0.529 Sum_probs=1054.9
Q ss_pred CcccccCcEEEEeCCCCCeEeEEEEEec--CCeEEEE--eCCCcEEEEeccccc--CCCCCCCCCCcCccccCCCCChhH
Q 000443 4 PDNIIVGSHVWVEDPVLAWINGEVMWIN--GQEVHVN--CTNGKKVVTSVSKVF--PEDTEAPAGGVDDMTKLSYLHEPG 77 (1504)
Q Consensus 4 ~~~~~~g~~vwv~~~~~~w~~~~v~~~~--~~~~~v~--~~~g~~~~~~~~~~~--~~~~~~~~~~~~Dl~~L~~l~e~~ 77 (1504)
...+.+|..||+||.+.+|+.|.|.+.+ ++.++.. ..+|..+.++...+- ..++| ..+++||||.|+|||||+
T Consensus 3 ~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P-~~~~vdDLt~LSyLNEps 81 (1463)
T COG5022 3 TTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLP-KFDGVDDLTELSYLNEPA 81 (1463)
T ss_pred ccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCc-cccCchhhhhhhccCcHH
Confidence 4568899999999999999999999753 3333322 235544444433221 11122 358999999999999999
Q ss_pred HHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCC
Q 000443 78 VLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGE 157 (1504)
Q Consensus 78 vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGE 157 (1504)
|||||++||.++.||||+|.||||||||+.+| ||++++|+.|++.+..+++|||||||++||++|...++|||||||||
T Consensus 82 Vl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGE 160 (1463)
T COG5022 82 VLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGE 160 (1463)
T ss_pred HHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEEecCCCCccceeEeee
Q 000443 158 SGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTY 237 (1504)
Q Consensus 158 SGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~~y 237 (1504)
|||||||+||+||+|||++++.++...++||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+||
T Consensus 161 SGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~Y 240 (1463)
T COG5022 161 SGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETY 240 (1463)
T ss_pred CCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhh
Confidence 99999999999999999999877666678999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCCcceeehhcccC-CHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHHHhhhhhcccChHHH
Q 000443 238 LLERSRVCQISDPERNYHCFYLLCAA-PHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQ 316 (1504)
Q Consensus 238 LLEksRvv~q~~~ErnyHiFYql~~~-~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~ 316 (1504)
||||||||+|+.+|||||||||||++ ++..++.+++..|.+|+||++|+|..++||||+++|..|+.||+++||+.++|
T Consensus 241 LLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq 320 (1463)
T COG5022 241 LLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQ 320 (1463)
T ss_pred hhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999999999999999995 55555666678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEeccCCHhhHHHh
Q 000443 317 EAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVAS 396 (1504)
Q Consensus 317 ~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~e~~~~~l~~~~a~~~ 396 (1504)
..||++||||||||||+|..+++ +++.+.+. ..++.+|.|||||+..|.+||++|.|.+++|.|.+|+|..||..+
T Consensus 321 ~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~i 396 (1463)
T COG5022 321 DQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAI 396 (1463)
T ss_pred HHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHH
Confidence 99999999999999999998654 44455443 359999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHHhhhhhhhhhhhHHHhhh
Q 000443 397 RDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTR 476 (1504)
Q Consensus 397 rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~~y~~ 476 (1504)
||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+
T Consensus 397 rdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~k 476 (1463)
T COG5022 397 RDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVK 476 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccChHHHHHHhhc-CcccccccchhhhcCCCCchHHHHHHHHHHhc--CCCCCCCCCCCCCceEEEecccc
Q 000443 477 EEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNRFSKPKLSRTDFTILHYAGE 553 (1504)
Q Consensus 477 E~i~~~~i~f~dn~~~ldlie~-k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~Hyag~ 553 (1504)
|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|+||||+
T Consensus 477 E~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgD 556 (1463)
T COG5022 477 EGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGD 556 (1463)
T ss_pred hcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeeccc
Confidence 9999999999999999999997 35699999999999999999999999999986 56789999999999999999999
Q ss_pred hhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCC
Q 000443 554 VTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKP 633 (1504)
Q Consensus 554 V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkP 633 (1504)
|+|+++||++||||++++++++|+.+|+|+|++.||++..+.. +.++++|+|+.||.||++||.+|++|+|||||||||
T Consensus 557 VeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkP 635 (1463)
T COG5022 557 VEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKP 635 (1463)
T ss_pred ceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCC
Confidence 9999999999999999999999999999999999999543333 346889999999999999999999999999999999
Q ss_pred CCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccccc-----CCCchHHHHHHHhhhcCCC
Q 000443 634 NNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-----GNYDDQVACQMILDKKGLK 708 (1504)
Q Consensus 634 N~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-----~~~~~~~~~~~ll~~~~~~ 708 (1504)
|..|.|+.||+.+|++|||||||||+|||+|+|||+||+|++|+.||++|.|.... ...|.+.+|+.||..+.++
T Consensus 636 N~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id 715 (1463)
T COG5022 636 NEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVID 715 (1463)
T ss_pred CcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999997432 1246799999999998776
Q ss_pred --cceeccceeeccchhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 000443 709 --GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAA 786 (1504)
Q Consensus 709 --~~~iG~TkVF~r~g~~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~~~~r~~~A 786 (1504)
.||+|+||||||+|+++.||.+|...++.+++.||+.|||++.|++|.+..+.+..+|...+|+..|+++..--.-.+
T Consensus 716 ~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1463)
T COG5022 716 SSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRL 795 (1463)
T ss_pred hhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHh
Confidence 699999999999999999999999999999999999999999999999999999999999999999987765555678
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhhHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000443 787 ALKIQTNFRAYVAQRSYLTVRSSAMILQ-TGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGW 865 (1504)
Q Consensus 787 Ai~IQ~~~Rg~l~Rr~y~~~r~a~i~IQ-s~~Rg~~aR~~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~ 865 (1504)
++.+|..||....|+.|......++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+.+|+.+
T Consensus 796 ~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~ 875 (1463)
T COG5022 796 FIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQ 875 (1463)
T ss_pred HHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999 677777777666677778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 866 RCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVI 945 (1504)
Q Consensus 866 R~~~arkel~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~ 945 (1504)
|...|++++..++.+.+++..+......++.++.++...+.......... +.+..+.++..+..
T Consensus 876 r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~---k~e~~a~lk~~l~~------------- 939 (1463)
T COG5022 876 RVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLNN------------- 939 (1463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHH---HHHHHHHHHHHhhc-------------
Confidence 99999999999999999999999999999999988876655211000000 00111111111111
Q ss_pred HHHHHHHHHHHhCCccccccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000443 946 KEREAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTK---KLKDAE 1021 (1504)
Q Consensus 946 ~e~~~~~~~~~e~~~~~~e~~~l~-~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~---kl~elE 1021 (1504)
. .+++.+... ....++..|.....+|++....+...+...+....+.....+++.. .+.+..
T Consensus 940 ------------~--d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~ 1005 (1463)
T COG5022 940 ------------I--DLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005 (1463)
T ss_pred ------------c--cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHH
Confidence 0 000000000 0111334444444444444444433333333333332222222111 111111
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcChhhHhhhhCccccccccCCCCCCCCCCccccccccccccCCC
Q 000443 1022 KRVDELQDSVQRLAEK---VSNLESENQVLRQQALAISPTAKALAARPKTTIIQRTPVNGNILNGEMKKVHDSVLTVPGV 1098 (1504)
Q Consensus 1022 ~~~~~Lq~el~~Leek---i~~Le~En~~Lrqq~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 (1504)
.+...++.....+++. +..+....+...+.. . ...+..+..+ +.+... .......+..
T Consensus 1006 ~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~~-----~----------~~~~~~~~~~--~~~~~~--~~~~~l~~~~ 1066 (1463)
T COG5022 1006 KQYGALQESTKQLKELPVEVAELQSASKIISSES-----T----------ELSILKPLQK--LKGLLL--LENNQLQARY 1066 (1463)
T ss_pred hhhhhhhhhhhhcccccchhhhhhhhhhhhccch-----h----------hhhccCcccc--hhhhhh--HHHHHhhhhH
Confidence 1111112222222211 222222222211100 0 0000000000 000000 0000000000
Q ss_pred CCC--CCCccccccchhhhhccHHHHHHHhh-cccCCCCC-ccchhHHH-HHHHhcccc-cccchHHHHHHHHHHHHhhh
Q 000443 1099 RDV--EPEHRPQKTLNEKQQENQDLLIKCIS-QDLGFSGG-KPVAACLI-YKCLLHWRS-FEVERTSIFDRIIQTISGAI 1172 (1504)
Q Consensus 1099 ~~~--~~~~~~~~~~~~~~~~~~~~li~~l~-~~~~~~~~-kp~pA~il-f~c~r~~~~-~~~~~~~ll~~ii~~I~~~v 1172 (1504)
..+ ..+....-..+....+....+++.+. +++.+.+- -+.||..+ +....+|+. ...+...++...+..++.+.
T Consensus 1067 ~~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~ 1146 (1463)
T COG5022 1067 KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF 1146 (1463)
T ss_pred hhhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchh
Confidence 000 00000000000011122222333332 22222211 12244443 334446665 44555666666677766655
Q ss_pred hhc---CCCcccceehHHHHHHHH---HHHHhhhhcCCCCCCcccccCCcccchhcccccccCCCCCCCCCccccccccc
Q 000443 1173 EVH---DNNDRLSYWLSNASTLLL---LLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGIPFLNSRILSG 1246 (1504)
Q Consensus 1173 ~~~---~d~~~l~fWLSN~~~LL~---~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1504)
..- +-.-...||.+|...+++ +.-.. +.+.... +++ +.+. .+.
T Consensus 1147 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~--------------d~~~-----~~s 1195 (1463)
T COG5022 1147 QKLSVLQLELDGLFWEANLEALPSPPPFAALS----------EKRLYQS--ALY--------------DEKS-----KLS 1195 (1463)
T ss_pred ccccchhccccccccccccccCCCCCchhhcc----------hhhhhHh--hhh--------------cccc-----ccc
Confidence 432 223457899999988773 11110 0000000 000 0000 000
Q ss_pred chhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc--cCCCCcccccccCCCcchhhhhhhhhhhHHH
Q 000443 1247 LDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCI--QAPRTSRASLIKGRSQANAVAQQALIAHWQS 1324 (1504)
Q Consensus 1247 ~~e~~~v~~~~~~~~fkqqL~~~~~~iy~~l~~~~~~~l~~~L~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1324 (1504)
.+++ ...+..+..+..++|..|.... .+.+++...+ .......+++ ..++..+..+...+.++
T Consensus 1196 ~s~v---------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1260 (1463)
T COG5022 1196 SSEV---------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGF----NNLNKKFDTPASMSNEK 1260 (1463)
T ss_pred HHHH---------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccc----cchhhcccCcccCcHHH
Confidence 1111 1235677777788888776554 2333332111 0001111111 00112233345667888
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHhhcCCCccccchhhHHHhhHHHHHHHHhhcCcccccchhH
Q 000443 1325 IVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWD 1404 (1504)
Q Consensus 1325 il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LEeW~~~~~~~~~~~~~~ 1404 (1504)
++.+++.+.++++.+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+++||+.++ ..++..
T Consensus 1261 ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~ 1337 (1463)
T COG5022 1261 LLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDE 1337 (1463)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 345558
Q ss_pred HhHHHHHHHHHHhhcCCCccCHHHHHhccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHhhcc
Q 000443 1405 ELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVSCKLLIISCAI 1474 (1504)
Q Consensus 1405 ~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~vs~~~i~~v~~~~~~~ 1474 (1504)
+|++++||+..+++.++...+++++ .+.|.+|+|.|+.+|+++|.+.++|+ ++|.++..+|-+.....
T Consensus 1338 ~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~l~ke~~~~~~a~~~~~ 1405 (1463)
T COG5022 1338 ELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-NLPKEILKKIEALLIKQ 1405 (1463)
T ss_pred HHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-CChHHHHHHHhhhhhHH
Confidence 9999999999999988777777777 59999999999999999999999995 99999997776555443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.6e-205 Score=1933.16 Aligned_cols=770 Identities=35% Similarity=0.552 Sum_probs=715.3
Q ss_pred CCcccccCcEEEE-------eCCCCCeEeEEEE-EecCCeEEEEe---CCCcEEEEecccccCCCCCCCCCCcCccccCC
Q 000443 3 APDNIIVGSHVWV-------EDPVLAWINGEVM-WINGQEVHVNC---TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLS 71 (1504)
Q Consensus 3 ~~~~~~~g~~vwv-------~~~~~~w~~~~v~-~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~ 71 (1504)
.+.++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+++.++.+++||+.|+
T Consensus 26 ~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~ 105 (821)
T PTZ00014 26 KSGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLP 105 (821)
T ss_pred cccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCC
Confidence 3556779999998 6789999999999 78899988874 57899999999999999877778999999999
Q ss_pred CCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcC-CcCCCCcchHhHHHHHHHHHHhcCCCe
Q 000443 72 YLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA-AFGELSPHVFAVGDAAYRAMINEGKSN 150 (1504)
Q Consensus 72 ~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHifaiA~~Ay~~m~~~~~~Q 150 (1504)
|||||+|||||+.||..+.||||+|++|||||||+.+| +|++++++.|++. ..+++||||||||+.||+.|...++||
T Consensus 106 ~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Q 184 (821)
T PTZ00014 106 HTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQ 184 (821)
T ss_pred CCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999998 9999999999985 578899999999999999999999999
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEEecCCCCcc
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRIS 230 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ 230 (1504)
||||||||||||||+||+||+|||.+++.. ...+|+++|++|||||||||||||+|||||||||||++|+||.+|.|+
T Consensus 185 sIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~ 262 (821)
T PTZ00014 185 TIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIR 262 (821)
T ss_pred eEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEe
Confidence 999999999999999999999999986532 235799999999999999999999999999999999999999999999
Q ss_pred ceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHHHhhhhhc
Q 000443 231 GAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIV 309 (1504)
Q Consensus 231 ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~l 309 (1504)
||+|.||||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||++|
T Consensus 263 Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~l 341 (821)
T PTZ00014 263 YGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSM 341 (821)
T ss_pred eEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 7889999999999999999995 588999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHhhcCceeccCCc---cCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEec
Q 000443 310 GISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITR 386 (1504)
Q Consensus 310 g~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~e~~~~ 386 (1504)
||+++++.+||+|||||||||||+|.+... .|++.+.+. +...++.||+|||||+++|.++||+|++.++++.+++
T Consensus 342 g~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~ 420 (821)
T PTZ00014 342 GLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEG 420 (821)
T ss_pred CCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEec
Confidence 999999999999999999999999986432 345555442 3457999999999999999999999999999999999
Q ss_pred cCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHHhhhhhhh
Q 000443 387 TLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHV 466 (1504)
Q Consensus 387 ~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~v 466 (1504)
|++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+||
T Consensus 421 ~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~v 500 (821)
T PTZ00014 421 PWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIV 500 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876778899999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCCCC-CCCce
Q 000443 467 FKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKL-SRTDF 545 (1504)
Q Consensus 467 f~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~-~~~~F 545 (1504)
|+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++++++|++|.+|+. ....|
T Consensus 501 F~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F 580 (821)
T PTZ00014 501 FERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNF 580 (821)
T ss_pred HHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 46799
Q ss_pred EEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHhccCC
Q 000443 546 TILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAP 625 (1504)
Q Consensus 546 ~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~ 625 (1504)
+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+|
T Consensus 581 ~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~p 660 (821)
T PTZ00014 581 VIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEP 660 (821)
T ss_pred EEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999875433334446689999999999999999999999
Q ss_pred eEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccccc-CCCchHHHHHHHhhh
Q 000443 626 HYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMILDK 704 (1504)
Q Consensus 626 hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll~~ 704 (1504)
|||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+.... ...|++++|+.||+.
T Consensus 661 hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~ 740 (821)
T PTZ00014 661 HFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLER 740 (821)
T ss_pred eEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887543 235899999999999
Q ss_pred cCC--CcceeccceeeccchhhHHHHHHHHHHhh---HHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 000443 705 KGL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKL 777 (1504)
Q Consensus 705 ~~~--~~~~iG~TkVF~r~g~~~~LE~~r~~~l~---~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~ 777 (1504)
+++ ++|++|+||||||+|+++.||.+|.+++. .++..||++||||++|++|.+.+.+++.||+.+||+++++.
T Consensus 741 ~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 741 SGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred cCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 876 48999999999999999999998888764 57788888888888888888887777777888777777653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5e-190 Score=1775.21 Aligned_cols=674 Identities=87% Similarity=1.326 Sum_probs=648.5
Q ss_pred CCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHH
Q 000443 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1504)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1504)
+|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|+||+++.|..|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEE
Q 000443 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1504)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l 221 (1504)
+|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876554557899999999999999999999999999999999999
Q ss_pred EecCCCCccceeEeeeccCCccccccCCCCCcceeehhcccCCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000443 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1504)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1504)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~ 381 (1504)
|+.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||.||||++++|.++|++|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666655556789999999999999999999999999999
Q ss_pred ceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHHhh
Q 000443 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 461 (1504)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~ 461 (1504)
+.+++|+++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCCCCC
Q 000443 462 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS 541 (1504)
Q Consensus 462 f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~ 541 (1504)
||++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHh
Q 000443 542 RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1504)
Q Consensus 542 ~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~ 621 (1504)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665545556789999999999999999999
Q ss_pred ccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccccCCCchHHHHHHH
Q 000443 622 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMI 701 (1504)
Q Consensus 622 ~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~l 701 (1504)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766567889999999
Q ss_pred hhhcCCCcceeccceeeccchhhHHHHHHHHHHh
Q 000443 702 LDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1504)
Q Consensus 702 l~~~~~~~~~iG~TkVF~r~g~~~~LE~~r~~~l 735 (1504)
|+.++.++|++|+||||||+|+++.||..|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-185 Score=1816.47 Aligned_cols=774 Identities=42% Similarity=0.719 Sum_probs=713.3
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEE-EecccccCCCCCCCCCCcCccccCCCCChhHHHHHHH
Q 000443 5 DNIIVGSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVV-TSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLA 83 (1504)
Q Consensus 5 ~~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~ 83 (1504)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ |+.++++|.||| .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456677899999999999999999988777999998887766 999999999986 567999999999999999999999
Q ss_pred HHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000443 84 TRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKT 163 (1504)
Q Consensus 84 ~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKT 163 (1504)
.||..+.||||+|.+||+||||+++| ||++++++.|+|+.+.++||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---CCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEEecCCCCccceeEeeeccC
Q 000443 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLE 240 (1504)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLE 240 (1504)
|+||.||+|||.+++++... +.+++++|+++||||||||||+|++|||||||||||+|+||.+|.|+||.|++||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCcceeehhccc-CCHHhHhhcCCCC-CCccccccCCCccccCCCCcHHHHHHHHhhhhhcccChHHHHH
Q 000443 241 RSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGS-PKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEA 318 (1504)
Q Consensus 241 ksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1504)
||||++|+++|||||||||+++ +++.++..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999976 899999999886 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEeccCCHhhHHHhHH
Q 000443 319 IFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRD 398 (1504)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~e~~~~~l~~~~a~~~rd 398 (1504)
||+|+||||||||+.|......+.+.+.+. ...+.+|.||||+.++|.++++++++.++++.+.+..+.+|+..+-.
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 999999999999999998655566655543 36899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHHhhhhhhhhhhhHHHhhhcC
Q 000443 399 ALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREE 478 (1504)
Q Consensus 399 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~~y~~E~ 478 (1504)
||||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHh-cCCCCCCCCC--CCCCceEEEecccch
Q 000443 479 INWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKPK--LSRTDFTILHYAGEV 554 (1504)
Q Consensus 479 i~~~~i~f-~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~Hyag~V 554 (1504)
|.|+||+| .|-||||||||+ |+||+++|||||++|++||.+|+.||+..| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 689999999994 669999999999999999999999999999 8999999997 556899999999999
Q ss_pred hccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCC-----------CccCCCCCcchhHHHHHHHHHHHHHHhcc
Q 000443 555 TYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNAT 623 (1504)
Q Consensus 555 ~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t 623 (1504)
.|+++|||+||+|++++.++.+|..|++++|+.||.+... ...|++.|.||+..||.||+.||++|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987321 13345577899999999999999999999
Q ss_pred CCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccccc-CCCchHHHHHHHh
Q 000443 624 APHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMIL 702 (1504)
Q Consensus 624 ~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll 702 (1504)
+|||||||.||+.|.|+.+|.++|+.||||.||||+|||+|.|||+|++|.+|..||.++.|.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555443 3467799999999
Q ss_pred hhcCCC--cceeccceeeccchhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 000443 703 DKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQ 780 (1504)
Q Consensus 703 ~~~~~~--~~~iG~TkVF~r~g~~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~~~ 780 (1504)
..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.| .+
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~-----------------------~k 794 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEF-----------------------KK 794 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 988654 69999999999999999999999998887766555555555555544 33
Q ss_pred Hh-hHHHHHHHhhhHHHHHHHHhhhhhhh
Q 000443 781 LR-REAAALKIQTNFRAYVAQRSYLTVRS 808 (1504)
Q Consensus 781 ~r-~~~AAi~IQ~~~Rg~l~Rr~y~~~r~ 808 (1504)
.. +..|+.+||+++|.|+..+.|.+++-
T Consensus 795 r~~~~~ai~~iQ~N~r~~~~lr~w~W~~L 823 (1930)
T KOG0161|consen 795 RLQQLDAIKVIQRNIRAYLKLRTWPWWRL 823 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 32 45688899999999999998888764
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-187 Score=1719.94 Aligned_cols=752 Identities=63% Similarity=0.999 Sum_probs=722.6
Q ss_pred CCCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHH
Q 000443 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1504)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1504)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|.+|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEE
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1504)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEeeeccCCccccccCCCCCcceeehhcccCCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000443 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1504)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1504)
+|+||.+|+|+||+|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+++|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000443 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1504)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~ 379 (1504)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|+|||++.+.|..+|+.|.|.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776655555443 799999999999999999999999999
Q ss_pred CCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHH
Q 000443 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQ-DPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1504)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1504)
+++.|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|++|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 445689999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000443 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1504)
Q Consensus 459 q~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1504)
||+||+|||+.||++|.+|||+|+.|+|.||++|+++||+ |.||++||||||++|.++|++|..||++.+.+|++|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHH
Q 000443 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1504)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~ 618 (1504)
+++++.|+|.||||+|+|+++|||+||||+|++++.+++..|+++|+..+|++..+.+.+.++++||+++|+.||..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666665566889999999999999999
Q ss_pred HHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccccCCCchHHHH
Q 000443 619 TLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVAC 698 (1504)
Q Consensus 619 ~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1504)
+|++|+||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|++..|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHhhhcCCCcceeccceeeccchhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Q 000443 699 QMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLY 778 (1504)
Q Consensus 699 ~~ll~~~~~~~~~iG~TkVF~r~g~~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~ 778 (1504)
+.+|+..+.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+.+||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHH
Q 000443 779 EQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 824 (1504)
Q Consensus 779 ~~~r~~~AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~ 824 (1504)
..+ +..||+.||+.||+|..|++|...+.+++.+|+.+||+.+|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 778999999999999999999999999999999999998887
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.2e-185 Score=1746.13 Aligned_cols=664 Identities=51% Similarity=0.855 Sum_probs=626.3
Q ss_pred CcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHH
Q 000443 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1504)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1504)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++...+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC--CCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEE
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~--~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1504)
|.++++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224689999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000443 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1504)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1504)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000443 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1504)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~ 379 (1504)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322221 234699999999999999999999999999
Q ss_pred CCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCeEEEEeeccCCCCCCCCChhHHHhhhhhh
Q 000443 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD---PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1504)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1504)
++|.+++|++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhc--CCCC
Q 000443 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNR 534 (1504)
Q Consensus 457 kLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 534 (1504)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ |.|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999999999999999999999997 4799999999999999999999999999998 8999
Q ss_pred CCCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCc-----------------c
Q 000443 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------------S 597 (1504)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1504)
|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532110 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHH
Q 000443 598 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1504)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1504)
+..+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12256899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCchHHHHHHHhhhcCC--CcceeccceeeccchhhHHHHHHH
Q 000443 678 NRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
.||++|+|.......|+++.|+.||+.+.. +.|++|+||||||+|+++.||..|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456899999999999875 589999999999999999999875
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3e-185 Score=1734.39 Aligned_cols=661 Identities=46% Similarity=0.766 Sum_probs=625.9
Q ss_pred CcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHH
Q 000443 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1504)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1504)
|||||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++...+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEE
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1504)
|.++++||||||||||||||||++|++|+|||.+++.. +.|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000443 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1504)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1504)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~ 379 (1504)
++.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ...++.||.||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 34555554 34799999999999999999999999999
Q ss_pred CCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHH
Q 000443 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1504)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1504)
+++.+++|++++||.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000443 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1504)
Q Consensus 459 q~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1504)
||+||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCc-cCCCCCcchhHHHHHHHHHH
Q 000443 539 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1504)
Q Consensus 539 ~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1504)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+ ..+.|.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754322 22336689999999999999
Q ss_pred HHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccccC--CCch
Q 000443 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG--NYDD 694 (1504)
Q Consensus 617 m~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1504)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..|+
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHhhhcCC--CcceeccceeeccchhhHHHHHHH
Q 000443 695 QVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 695 ~~~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
+..|+.+++.+.+ ++|++|+||||||+++++.||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8999999998765 589999999999999999999865
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.6e-185 Score=1740.44 Aligned_cols=667 Identities=45% Similarity=0.761 Sum_probs=627.2
Q ss_pred CCCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHH
Q 000443 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1504)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1504)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC------CCCCcHHHHHHhhchHHhhhccccccCCCCCC
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~------~~~~~ie~~vl~snpilEaFGNAkT~rN~NSS 213 (1504)
|+.|...++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred ccccEEEEEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCC-CccccccCCCccccC
Q 000443 214 RFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSP-KSFHYLNQSNCYELD 291 (1504)
Q Consensus 214 RfGk~~~l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~ 291 (1504)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78999999999876 99999999886 578
Q ss_pred CCCcHHHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHh
Q 000443 292 GVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDA 371 (1504)
Q Consensus 292 ~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1504)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. .++..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987644455555543 47999999999999999999
Q ss_pred hceeEEEeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHh
Q 000443 372 LIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1504)
Q Consensus 372 l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1504)
||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred hhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhc
Q 000443 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA 530 (1504)
Q Consensus 452 NyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f-~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~ 530 (1504)
|||||||||+|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCC--CCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCC----------ccC
Q 000443 531 KNNRF--SKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE----------SSK 598 (1504)
Q Consensus 531 ~~~~~--~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~----------~~~ 598 (1504)
+|+.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..... ..+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 445566789999999999999999999999999999999999999999999999754221 112
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHH
Q 000443 599 SSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVN 678 (1504)
Q Consensus 599 ~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 678 (1504)
.++++||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|++|+.
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccc-cCCCchHHHHHHHhhhcCCC--cceeccceeeccchhhHHHHHHH
Q 000443 679 RFGILAPEVL-EGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~ll~~~~~~--~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
||++|+|... ....|+++.|+.||+.++++ +|++|+||||||+|++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 33468899999999998764 89999999999999999999876
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-181 Score=1563.68 Aligned_cols=785 Identities=39% Similarity=0.653 Sum_probs=710.3
Q ss_pred ccCcEEEEeCCCCCeEeEEEEEecCCeEEEEe--CCCcEEEEecccccCCCCCCCCCCcCccccCCCCChhHHHHHHHHH
Q 000443 8 IVGSHVWVEDPVLAWINGEVMWINGQEVHVNC--TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATR 85 (1504)
Q Consensus 8 ~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R 85 (1504)
.-|..||++|+.++|+.|.|++++.+..++.. ..|.+++.-.+++++...+ ++..|||-|.|-||||+.+|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45889999999999999999999988888864 3577788888888887543 56889999999999999999999999
Q ss_pred hccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000443 86 YELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTET 165 (1504)
Q Consensus 86 ~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~ 165 (1504)
|.+|.||||+++||||||||..++.+|+++.|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEEecCCCCccceeEeeeccCCcccc
Q 000443 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVC 245 (1504)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRvv 245 (1504)
+|++++||+.--|+ +..|+++||++||||||||||||+|||||||||||++|||+.+|.++|+-+++|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCc--------------------------cccCCCCcHHH
Q 000443 246 QISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNC--------------------------YELDGVSDAHE 298 (1504)
Q Consensus 246 ~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1504)
.|+.+|||||||||||| ++++.+++|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8999999999999999999985411 11123789999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cCccccccccchHHHHHHHHHcCCCHHHHHHhhceeE
Q 000443 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1504)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~ 376 (1504)
|..+..||+.+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|.++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34566665 3556799999999999999999999998
Q ss_pred EEeC-----CceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHh
Q 000443 377 MVTP-----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1504)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1504)
|.+. |-.|.+||.+.+|..+||||||++|++||||||.+||.++... .+..|||||||.|||-|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 8753 3478999999999999999999999999999999999999654 578899999999999999999999999
Q ss_pred hhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcC
Q 000443 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAK 531 (1504)
Q Consensus 452 NyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1504)
||+|||||++||+.+++.||+.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+++++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC----------CCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccC--C
Q 000443 532 NNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSK--S 599 (1504)
Q Consensus 532 ~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~ 599 (1504)
|-+...||.+ ...|.|+||||.|+|++..|+|||.|.|+..+..|+..|+++||.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888888643 358999999999999999999999999999999999999999999999876443322 2
Q ss_pred C--CCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHH
Q 000443 600 S--KFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1504)
Q Consensus 600 ~--~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1504)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|++||...++.||.|+|+...++++..|||+|..|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCchHHHHHHHhhhcCCC--cceeccceeeccchhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHH
Q 000443 678 NRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEF 755 (1504)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iG~TkVF~r~g~~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~ 755 (1504)
.-|+-.+|+.+. ..|++..|+.++..+|++ +|+||.||||||+|.++..+.+........+..|+ .+..|+.|.+|
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~-kVn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVA-KVNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHH-HHHHHHHHhHH
Confidence 999988887655 469999999999999986 89999999999999999999987777666666665 47889999999
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 000443 756 ILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSS 809 (1504)
Q Consensus 756 ~~~r~a~i~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~l~Rr~y~~~r~a 809 (1504)
.+...++..+=..- .+. .-|..+.+++|+.+|||++|++++..-..
T Consensus 793 kk~q~~a~sVIKLk----NkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~ 838 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLK----NKI----IYRAECVLKAQRIARGYLARKRHRPRIAG 838 (1259)
T ss_pred HHhhhhhhheeehh----hHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 87765544322110 111 12446788999999999999998865443
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.5e-183 Score=1722.68 Aligned_cols=662 Identities=45% Similarity=0.768 Sum_probs=627.0
Q ss_pred CcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHH
Q 000443 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1504)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1504)
|||||+.|++|||++|||+|+.||..|.||||+|+||||||||+.+| +|+++.++.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEE
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1504)
|...++||||||||||||||||++|++|+|||.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000443 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1504)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1504)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~ 381 (1504)
|+.||+.|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 3334443 3579999999999999999999999999998
Q ss_pred ----ceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEeeccCCCCCCCCChhHHHhhhhhh
Q 000443 382 ----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1504)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1504)
|.+++|+++++|.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhhcCC-CCchHHHHHHHHHHhcCCCC
Q 000443 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFSQKLCQTFAKNNR 534 (1504)
Q Consensus 457 kLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~-k~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 534 (1504)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHH
Q 000443 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1504)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1504)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433222 2256899999999999
Q ss_pred HHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccc-cCCCc
Q 000443 615 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYD 693 (1504)
Q Consensus 615 ~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1504)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|+.||++|+|... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHhhhcCC--Ccceeccceeeccch-hhHHHHHHH
Q 000443 694 DQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1504)
Q Consensus 694 ~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g-~~~~LE~~r 731 (1504)
++++|+.||..+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999876 489999999999998 789999865
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.5e-183 Score=1717.15 Aligned_cols=657 Identities=48% Similarity=0.806 Sum_probs=615.5
Q ss_pred CCCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHH
Q 000443 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1504)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1504)
..+++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|++.. .+||||||||+.|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999998 99999999998764 4699999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEE
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1504)
|+.|..+++||||||||||||||||++|++|+|||.+++. ..|+++|++|||||||||||||+|||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHH
Q 000443 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1504)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1504)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000443 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1504)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~ 378 (1504)
|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+ .+.+..||.||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 9999999999999999999999999999999999998654333333332 3469999999999999999999999999
Q ss_pred eCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEeeccCCCCCCCCChhHHHhhhhhhH
Q 000443 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 457 (1504)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEk 457 (1504)
++++.+++|++++||.++||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 46799999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCC
Q 000443 458 LQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK 537 (1504)
Q Consensus 458 Lq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~ 537 (1504)
|||+||++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCC-----CC------CccCCCCCcchh
Q 000443 538 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPL-----PE------ESSKSSKFSSIG 606 (1504)
Q Consensus 538 p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~-----~~------~~~~~~~~~tv~ 606 (1504)
|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. .+.+.++.+||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 578999999999999999999999999999999999999999876 55321 10 011223568999
Q ss_pred HHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccc
Q 000443 607 SRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 686 (1504)
Q Consensus 607 ~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~ 686 (1504)
++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCchHHHHHHHhhhcCC--CcceeccceeeccchhhHHHHHHH
Q 000443 687 VLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 687 ~~~~~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
... ..|++..|+.||+.+++ ++|++|+||||||+|+++.||..|
T Consensus 632 ~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 544 35789999999999876 489999999999999999999865
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.3e-183 Score=1577.43 Aligned_cols=729 Identities=40% Similarity=0.685 Sum_probs=676.9
Q ss_pred CCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHH
Q 000443 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1504)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1504)
..|++|++-|+.+.|++++.||+.||..+.||||+|+|||+||||+.++ ||++++|++|+|....+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 3789999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCC-CCcHHHHHHhhchHHhhhccccccCCCCCCccccEE
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE-GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~-~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1504)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.++.. ...|.+.+|.|||||||||||||.|||||||||||+
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 9999999999999999999999999999999999998755421 245778999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCC-CCCccccccCCCccccCCCCcHH
Q 000443 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAH 297 (1504)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1504)
.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.+...|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 888889999995 79999999998 78899999999
Q ss_pred HHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEE
Q 000443 298 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1504)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~ 377 (1504)
+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+.+. ..+..+|+||++..++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 45555443 47999999999999999999999999
Q ss_pred EeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-----CCCCeEEEEeeccCCCCCCCCChhHHHhh
Q 000443 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-----PDSKSIIGVLDIYGFESFKCNSFEQFCIN 452 (1504)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfEQlcIN 452 (1504)
.+++|.+.++++++||.++||||||++|+|||+|||.+||++|... ....+.||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999643 12358999999999999999999999999
Q ss_pred hhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCC-CchHHHHHHHHHHhcC
Q 000443 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFSQKLCQTFAK 531 (1504)
Q Consensus 453 yaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~ 531 (1504)
|+||||||.|++-++|.|||||.+|||+|+.|+|.+|.-++||+|.+..||+++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCCCCCC-------CCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCC-CCCc
Q 000443 532 NNRFSKPK-------LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKS-SKFS 603 (1504)
Q Consensus 532 ~~~~~~p~-------~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~-~~~~ 603 (1504)
|++|..-+ +.-.+|.|.||||+|+|++.||++||+|.|..|+-.+|..|+++++++||+....+.... .+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 234689999999999999999999999999999999999999999999998754332222 3668
Q ss_pred chhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccc
Q 000443 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1504)
Q Consensus 604 tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1504)
|.|++||.|+..||++|.+-+|+||||||||+.|.|+.||...|.+|.++.|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc--CCCchHHHHHHHhhhcCCC-cceeccceeeccchh-hHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 000443 684 APEVLE--GNYDDQVACQMILDKKGLK-GYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLR 759 (1504)
Q Consensus 684 ~~~~~~--~~~~~~~~~~~ll~~~~~~-~~~iG~TkVF~r~g~-~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r 759 (1504)
++..++ ...++++.|..|++..|.. ++.+|+||||+|... +-.||..|.+.+...++.||+.||||++|.+|++|+
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987553 2345799999999999874 899999999999765 568999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHhhhhh
Q 000443 760 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTV 806 (1504)
Q Consensus 760 ~a~i~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~l~Rr~y~~~ 806 (1504)
++++.|+ |||.+.. | .++..||+.+||+..++.|.+-
T Consensus 720 a~~~ii~-wyR~~K~-------k--s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYKL-------K--SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHH-HHHHHHH-------H--HHHHHHHHHHHhhhhccccCCC
Confidence 9999999 8884432 2 5677899999999999988753
No 13
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1e-182 Score=1712.92 Aligned_cols=661 Identities=41% Similarity=0.715 Sum_probs=618.2
Q ss_pred CCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHH
Q 000443 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1504)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1504)
+|||||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++.+.+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEE
Q 000443 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1504)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l 221 (1504)
.|...++||||||||||||||||++|++|+|||.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 25699999999999999999999999999999999999
Q ss_pred EecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHH
Q 000443 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 300 (1504)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 300 (1504)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000443 301 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1504)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~ 378 (1504)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...++.||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999986432 22334433 3469999999999999999999999999
Q ss_pred eCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHH
Q 000443 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1504)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1504)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999874 4567999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000443 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1504)
Q Consensus 459 q~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1504)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCC---------c--cCCCCCcchhH
Q 000443 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE---------S--SKSSKFSSIGS 607 (1504)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1504)
+.+...|+|+||||+|+|+++||++||+|.++++++++|.+|++++|+.||+..... + .+..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999653210 0 01124579999
Q ss_pred HHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccc
Q 000443 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1504)
Q Consensus 608 ~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1504)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHhhhcCC--CcceeccceeeccchhhHHHHHHH
Q 000443 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
.....+.+..+..++..+++ +.||+|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44333334445788887765 479999999999999999999875
No 14
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=4.1e-182 Score=1710.98 Aligned_cols=663 Identities=41% Similarity=0.677 Sum_probs=622.4
Q ss_pred CCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCC-cCCCCcchHhHHHHHH
Q 000443 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAA-FGELSPHVFAVGDAAY 140 (1504)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifaiA~~Ay 140 (1504)
.++|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++.. .+++|||||+||+.||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998 99999999999887 7899999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEE
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1504)
+.|..+++||||||||||||||||++|++|+|||.+++... .+..|+++|++|||||||||||||+|||||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 99999999999999999999999999999999999975332 23679999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000443 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1504)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1504)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++++.|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999988889999999998877899999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc---cCccccccccchHHHHHHHHHcCCCHHHHHHhhceeE
Q 000443 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1504)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~ 376 (1504)
.+|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ .+.+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999987432 34444443 35799999999999999999999999
Q ss_pred EEeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC---CCeEEEEeeccCCCCCCC-CChhHHHhh
Q 000443 377 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD---SKSIIGVLDIYGFESFKC-NSFEQFCIN 452 (1504)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~---~~~~IgiLDi~GFE~f~~-NsfEQlcIN 452 (1504)
+.+++|.+++|++++||..+||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 9999999999999999999999999999999999999999999986542 468999999999999999 999999999
Q ss_pred hhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCC
Q 000443 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKN 532 (1504)
Q Consensus 453 yaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 532 (1504)
|||||||++||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCcc---------CCCCCc
Q 000443 533 NRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS---------KSSKFS 603 (1504)
Q Consensus 533 ~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~ 603 (1504)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..+.... ++.+.+
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999976432211 122347
Q ss_pred chhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccc
Q 000443 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1504)
Q Consensus 604 tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1504)
||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCchHHHHHHHhhhcCCC--cceeccceeeccchhhHHHHHHHH
Q 000443 684 APEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1504)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iG~TkVF~r~g~~~~LE~~r~ 732 (1504)
+|... .+.++.|+.||+.++++ +|++|+||||||+++++.||....
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 98743 23467899999998874 899999999999999999998644
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=4.9e-182 Score=1716.12 Aligned_cols=663 Identities=42% Similarity=0.721 Sum_probs=619.3
Q ss_pred CCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHH
Q 000443 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1504)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1504)
+.++|||+.|++||||+|||||+.||..+.||||+|+||||||||+.+|++|+++.+..|+++..+++||||||||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEE
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1504)
++|...++||||||||||||||||++|+||+|||.+++++ ..|+++|++|||||||||||||+|||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 9999999999999999999999999999999999986542 579999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCC-------------
Q 000443 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN------------- 286 (1504)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~------------- 286 (1504)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred -------------ccccCCCCcHHHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc-cCccccccccchH
Q 000443 287 -------------CYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE-IDSSVIKDEKSRF 352 (1504)
Q Consensus 287 -------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~~ 352 (1504)
|...+++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHH
Confidence 23467899999999999999999999999999999999999999999987432 23333332 2446
Q ss_pred HHHHHHHHcCCCHHHHHHhhceeEEE-----eCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 000443 353 HLNMTAELLRCDAQSLEDALIKRVMV-----TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSK 427 (1504)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~ 427 (1504)
.+..||.||||++++|.++|++|++. ++++.+.+|++++||.++||+|||+||++||+|||.+||.++..+. ..
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-SS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC
Confidence 79999999999999999999999998 6789999999999999999999999999999999999999997653 56
Q ss_pred eEEEEeeccCCCCCCCCChhHHHhhhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccc
Q 000443 428 SIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALL 507 (1504)
Q Consensus 428 ~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lL 507 (1504)
.+||||||||||+|+.|||||||||||||||||+||++||+.||++|.+|||+|++|+|.||++|||||++||.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHhcCCCCCCCCCCC----------CCceEEEecccchhccccchhhhccchhHHHHHHHH
Q 000443 508 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALL 577 (1504)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll 577 (1504)
||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|
T Consensus 477 Dee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll 556 (717)
T cd01382 477 DEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLI 556 (717)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHH
Confidence 9999999999999999999999999988877532 357999999999999999999999999999999999
Q ss_pred HhcchhhHhhcCCCCCCCc---c--CCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhc
Q 000443 578 TAAKCSFVAGLFPPLPEES---S--KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLR 652 (1504)
Q Consensus 578 ~~S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr 652 (1504)
++|+++||+.||+...... . +..++.||+++||.||+.||++|++|+||||||||||+.|+|+.||...|++|||
T Consensus 557 ~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr 636 (717)
T cd01382 557 CESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQ 636 (717)
T ss_pred HhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHH
Confidence 9999999999998643211 1 1225679999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhCCCcccchhHHHHhhcccccccccCCCchHHHHHHHhhhcCCC--cceeccceeeccchhhHHHHHH
Q 000443 653 CGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDAR 730 (1504)
Q Consensus 653 ~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iG~TkVF~r~g~~~~LE~~ 730 (1504)
|+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||++
T Consensus 637 ~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 637 CSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred hcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999999999999886543 358899999999998864 8999999999999999999975
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.2e-179 Score=1675.92 Aligned_cols=639 Identities=39% Similarity=0.698 Sum_probs=602.5
Q ss_pred CcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHH
Q 000443 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1504)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1504)
++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.+..|++...+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEE
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1504)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhH-hhcCCCCCCccccccCCCccccCCCC----cH
Q 000443 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDI-AKYKLGSPKSFHYLNQSNCYELDGVS----DA 296 (1504)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1504)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++.+|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999987777775 46
Q ss_pred HHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc---cCccccccccchHHHHHHHHHcCCCHHHHHHhhc
Q 000443 297 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALI 373 (1504)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 373 (1504)
++|.+|+.||+.|||+++++..||+|||||||||||+|.+... .+.+.+.+ ..+++.+|+|||||.++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 23334433 45799999999999999999999
Q ss_pred eeEEEeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-----CCeEEEEeeccCCCCCCCCChhH
Q 000443 374 KRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-----SKSIIGVLDIYGFESFKCNSFEQ 448 (1504)
Q Consensus 374 ~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfEQ 448 (1504)
++++.++++.+++|+++++|.++||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986543 35799999999999999999999
Q ss_pred HHhhhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHH
Q 000443 449 FCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 528 (1504)
Q Consensus 449 lcINyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 528 (1504)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHH
Q 000443 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1504)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1504)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 5678899888889999999999999999999999999999999999887 589999
Q ss_pred HHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccc
Q 000443 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1504)
Q Consensus 609 f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1504)
||.||.+||++|++|+||||||||||+.|.|+.||+..|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred cCCCchHHHHHHHhhhcCCCcceeccceeeccchhhHHHHHHH
Q 000443 689 EGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 689 ~~~~~~~~~~~~ll~~~~~~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3e-178 Score=1683.89 Aligned_cols=667 Identities=54% Similarity=0.894 Sum_probs=631.2
Q ss_pred CCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHH
Q 000443 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1504)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1504)
..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.+..|++...+++|||||+||++||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEE
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1504)
+.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 24679999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000443 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1504)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1504)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCcc-ccccccchHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000443 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSS-VIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1504)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~ 378 (1504)
.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.. .+. +...++.||.||||+.++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999875432221 222 34579999999999999999999999999
Q ss_pred eCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHH
Q 000443 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1504)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1504)
+++|.+++++++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998777889999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000443 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1504)
Q Consensus 459 q~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1504)
|++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHH
Q 000443 539 K-LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 617 (1504)
Q Consensus 539 ~-~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm 617 (1504)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++|+.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 456799999999999999999999999999999999999999999999998754433334467899999999999999
Q ss_pred HHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccccc-CCCchHH
Q 000443 618 ETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQV 696 (1504)
Q Consensus 618 ~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~ 696 (1504)
++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++.... ...|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987543 2346899
Q ss_pred HHHHHhhhcCC--CcceeccceeeccchhhHHHHHHHH
Q 000443 697 ACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1504)
Q Consensus 697 ~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r~ 732 (1504)
.|+.||+.+++ ++|++|+||||||++++..||..|+
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999875 5899999999999999999999873
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.6e-178 Score=1533.43 Aligned_cols=694 Identities=41% Similarity=0.706 Sum_probs=648.0
Q ss_pred CCCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHH
Q 000443 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1504)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1504)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|.|++.-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEE
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1504)
|++|..+.+||||||||||||||||+||+||+|++.+++. +.....|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 9999999999999999999999999999999999999843 444567889999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHH
Q 000443 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1504)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1504)
||+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+++.|..||+..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000443 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1504)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~ 378 (1504)
|++|+.||+++||.+++|+.||++||||||||||.|.+.. ..+.+.+. +.++-.|.|||||...|++.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998732 23344432 368899999999999999999999997
Q ss_pred eC----CceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEeeccCCCCCCCCChhHHHhhh
Q 000443 379 TP----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINF 453 (1504)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINy 453 (1504)
+. .+++.+||+++||.+.||||||+||.+||||||++||.+|..... ...+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 64 478999999999999999999999999999999999999975433 5678999999999999999999999999
Q ss_pred hhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhhcCC----CCchHHHHHHHHHH
Q 000443 454 TNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFSQKLCQT 528 (1504)
Q Consensus 454 aNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~-k~~Gil~lLdee~~~p----~~~d~~~~~kl~~~ 528 (1504)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||. +|.||+++|||.|--. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4779999999999753 46799999999999
Q ss_pred hcCCCCCCCCCCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHH
Q 000443 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1504)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1504)
+++||+|..- ...|+|+||||+|+||++||.+||||.|..|+++|++.|+++|++.||+...+.. +..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhh
Confidence 9999999753 5789999999999999999999999999999999999999999999998754433 34467899999
Q ss_pred HHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhcccccccc
Q 000443 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1504)
Q Consensus 609 f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1504)
.+.|-++|.+||.+|.||||||||||+.|.|+.||...|++|+.|.|+-|.|||+|+||.+|..|+.|+.||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c-CCCchHHHHHHHhhhcCC--Ccceeccceeeccch-hhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhhhHHHH
Q 000443 689 E-GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVI 764 (1504)
Q Consensus 689 ~-~~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g-~~~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~ 764 (1504)
. ...|++.+|+.||+...+ ++||+|.||||.+.. .+-.||.+|+......|.+||++||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 346899999999998655 589999999999975 466799999999999999999999999999999988865544
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3.4e-176 Score=1670.91 Aligned_cols=662 Identities=51% Similarity=0.845 Sum_probs=621.5
Q ss_pred CcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHH
Q 000443 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1504)
Q Consensus 63 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1504)
|+|||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEE
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1504)
|.++++||||||||||||||||++|++|+||+.++++. ...|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 357999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000443 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1504)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1504)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999998899999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCc--cccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDS--SVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~ 379 (1504)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.+|.||||+.++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 3333 345799999999999999999999999999
Q ss_pred CCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHH
Q 000443 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 459 (1504)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq 459 (1504)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999987677889999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCCCCC-C
Q 000443 460 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK-P 538 (1504)
Q Consensus 460 ~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~-p 538 (1504)
|+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||++.|++|++|.. |
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998644 4
Q ss_pred CCCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCC-----------ccCCCCCcchhH
Q 000443 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 607 (1504)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1504)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999764211 112236689999
Q ss_pred HHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccccc
Q 000443 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1504)
Q Consensus 608 ~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1504)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCchHHHHHHHhhhcCC--CcceeccceeeccchhhHHHHHHH
Q 000443 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
.......+..|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333334449999998876 489999999999999999999764
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.2e-176 Score=1662.67 Aligned_cols=660 Identities=31% Similarity=0.491 Sum_probs=592.4
Q ss_pred cCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHH
Q 000443 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1504)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1504)
||||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEEe
Q 000443 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQF 223 (1504)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~f 223 (1504)
..+++||||||||||||||||++|+||+|||.+++..+. ...+ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 1234 57999999999999999999999999999999999
Q ss_pred cCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCC-ccccCCCCcHHHHHH
Q 000443 224 DKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN-CYELDGVSDAHEYLA 301 (1504)
Q Consensus 224 ~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~-~~~~~~~dd~~~f~~ 301 (1504)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...+++||+++|.+
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765543333332 334678999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~ 381 (1504)
|+.||++|||+++++.+||+|||||||||||+|.+.. +.+.+.+ .+.++.+|.||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999997622 2233333 3469999999999999999999998876554
Q ss_pred c-------------eEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeeccCCCCCCC-----
Q 000443 382 E-------------VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKC----- 443 (1504)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1504)
+ .+..++++++|.++||||||+||++||+|||.+||.+|..+..+..+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678999999999999999999999999999999998766778999999999999984
Q ss_pred -CChhHHHhhhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCc--------------ccccccc
Q 000443 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKP--------------GGIIALL 507 (1504)
Q Consensus 444 -NsfEQlcINyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f-~dn~~~ldlie~k~--------------~Gil~lL 507 (1504)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 4999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHhcCCCCCCCCC--C----CCCceEEEecccc--hhccccchhhhccchh-HHHHHHHHH
Q 000443 508 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPK--L----SRTDFTILHYAGE--VTYQANHFLDKNKDYV-VAEHQALLT 578 (1504)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~--~----~~~~F~i~Hyag~--V~Y~~~gfl~kN~d~l-~~~~~~ll~ 578 (1504)
||||++|++||++|++||++.|++|+.|.+++ . ....|+|+||||. |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999988887622 1 2468999999995 9999999999999976 589999999
Q ss_pred hcchhhHhhcCCCCCC-------------Ccc----------C--------CCCCcchhHHHHHHHHHHHHHHhccCCeE
Q 000443 579 AAKCSFVAGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNATAPHY 627 (1504)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~Lm~~l~~t~~hf 627 (1504)
+|++++|+.||+.... ..+ + ..|.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999954210 000 0 01345899999999999999999999999
Q ss_pred EeecCCCCCCC----------------------CccccchhhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccccc
Q 000443 628 IRCVKPNNVLK----------------------PSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 685 (1504)
Q Consensus 628 IrCIkPN~~~~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 685 (1504)
|||||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999987
Q ss_pred cccc------CCCchHHHHHHHhhhcCCC--cceeccceeeccchhhHHHHHHH
Q 000443 686 EVLE------GNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1504)
Q Consensus 686 ~~~~------~~~~~~~~~~~ll~~~~~~--~~~iG~TkVF~r~g~~~~LE~~r 731 (1504)
.... ...|++++|+.||+.++++ +|+||+||||||+|+++.||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6431 2358899999999998764 89999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=9.8e-168 Score=1614.80 Aligned_cols=653 Identities=49% Similarity=0.852 Sum_probs=579.3
Q ss_pred cCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHH
Q 000443 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1504)
Q Consensus 64 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1504)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|+++.+..|++...+++||||||||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-CCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEEEE
Q 000443 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1504)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~-~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1504)
+++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000443 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1504)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1504)
||.+|.++||+|.+||||||||+.|++||||||||||||+ ++++++++|+|.++.+|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000443 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1504)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~ 381 (1504)
++.||++|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765555555543 359999999999999999999999999999
Q ss_pred ceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CCCeEEEEeeccCCCCCCCCChhHHHhhhhhhHHHh
Q 000443 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 460 (1504)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq~ 460 (1504)
|.+++++++++|.++||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..|||||||||||||+||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHh-cCCCCCCCC
Q 000443 461 HFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKP 538 (1504)
Q Consensus 461 ~f~~~vf~~eq~~y~~E~i~~~~i~f-~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p 538 (1504)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999888
Q ss_pred C----CCCCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCC--------------C-----
Q 000443 539 K----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE--------------E----- 595 (1504)
Q Consensus 539 ~----~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~--------------~----- 595 (1504)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421 0
Q ss_pred --ccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCCCcccch
Q 000443 596 --SSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1504)
Q Consensus 596 --~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~ 673 (1504)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccccccC----CCchHHHHHHHhhhcCC--Ccceeccceeecc
Q 000443 674 YEFVNRFGILAPEVLEG----NYDDQVACQMILDKKGL--KGYQIGKTKVFLR 720 (1504)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~ll~~~~~--~~~~iG~TkVF~r 720 (1504)
.+|++||++|.|..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999886532 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=6.3e-116 Score=1111.09 Aligned_cols=752 Identities=36% Similarity=0.562 Sum_probs=663.6
Q ss_pred CCCcCccccCCCCChhHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHH
Q 000443 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1504)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1504)
..+++||+.|.+++|+.+++||..||..+.||||+|++|++||||+.+|.+|.+..+..|.+.+.+++||||||+|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhccccccCCCCCCccccEEE
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1504)
++|++...||||+|||||||||||+|+++++||+.++. .....++++|+.+||+|||||||+|.+|||||||||||+
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~ 216 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIK 216 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEE
Confidence 99999999999999999999999999999999999983 123578999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEeeeccCCccccccCCCCCcceeehhccc-CCHHhHhhcCCCCCCccccccCCCcccc-CCCCcHHH
Q 000443 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYEL-DGVSDAHE 298 (1504)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRvv~q~~~ErnyHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~dd~~~ 298 (1504)
+.|...|.|.||.+.-||||||||+.|+.+||||||||++++ .+.++++.+.|+.+.+|.||+++.+..+ +|.+|..+
T Consensus 217 ~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~ 296 (1062)
T KOG4229|consen 217 VNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQ 296 (1062)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 7778999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCC--ccCccccccccchHHHHHHHHHcCCCHHHHHHhhceeE
Q 000443 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK--EIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1504)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~ 376 (1504)
|..+..||.++||+.+++..||+++|||||+|||+|.... ..|.+.+.+ ..++..+|.||+++.+.|.++++.++
T Consensus 297 ~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 297 FIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhcccc
Confidence 9999999999999999999999999999999999997632 234444443 34799999999999999999999999
Q ss_pred EEeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC--CCeEEEEeeccCCCCCCCCChhHHHhhhh
Q 000443 377 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD--SKSIIGVLDIYGFESFKCNSFEQFCINFT 454 (1504)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfEQlcINya 454 (1504)
..++++.+..+++.++|.++|||+||.+|++||.|||.+||..+..+.. +..+||||||||||+|+.|||||||||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987655 37899999999999999999999999999
Q ss_pred hhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCchHHHHHHHHHHhcCCCC
Q 000443 455 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNR 534 (1504)
Q Consensus 455 NEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~ 534 (1504)
||+||++||+|||.+||+||..|+|+|..|+|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+|+.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCC-CCceEEEecccchhccccchhhhccchhHHHHHHHHHhcchhhHhhcCCCCCCC------------------
Q 000443 535 FSKPKLS-RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE------------------ 595 (1504)
Q Consensus 535 ~~~p~~~-~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~~~~v~~lf~~~~~~------------------ 595 (1504)
+..|+.. .+.|+|.||||.|.|++.||+|||+|+++.+++.++++|.+.++..++...+..
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 8877664 569999999999999999999999999999999999999888887765421000
Q ss_pred ------------------------------------------------c-----------------------c-------
Q 000443 596 ------------------------------------------------S-----------------------S------- 597 (1504)
Q Consensus 596 ------------------------------------------------~-----------------------~------- 597 (1504)
+ +
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 0 0
Q ss_pred C----------C--------------CC--------------------------------------------------Cc
Q 000443 598 K----------S--------------SK--------------------------------------------------FS 603 (1504)
Q Consensus 598 ~----------~--------------~~--------------------------------------------------~~ 603 (1504)
+ . .+ ..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 0 0 00 00
Q ss_pred chhH----------------HHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhcccchhHHHHHHhhCC
Q 000443 604 SIGS----------------RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGY 667 (1504)
Q Consensus 604 tv~~----------------~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gy 667 (1504)
.++. ++......++..+....|.|++|++-|-.+.+..|+...|..|+++.|+++..+++..+|
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 0111 223445567888888899999999999888888999999999999999999999999999
Q ss_pred CcccchhHHHHhhcccccccccCCCchHHHHHHHhhhc--CCCcceeccceeeccchhhHHHHHHHHHHhhH-HHHHHHH
Q 000443 668 PTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKK--GLKGYQIGKTKVFLRAGQMAELDARRAEVLGN-AARKIQR 744 (1504)
Q Consensus 668 p~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~--~~~~~~iG~TkVF~r~g~~~~LE~~r~~~l~~-aa~~IQ~ 744 (1504)
+..+++.+|...+.+..|... +.........+ ..++++.|++++|+...-...++..-..-... .+...|+
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~------~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 927 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETV------DTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQK 927 (1062)
T ss_pred cccccchhccccccccCCccc------hhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHH
Confidence 999999999999999887321 11111222222 34689999999999877665544433222222 3778899
Q ss_pred HHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-HHhhHHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHH
Q 000443 745 QTRTYIARKEFILLRNAAVILQSFLRGEMARKLYE-QLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVAR 823 (1504)
Q Consensus 745 ~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~~-~~r~~~AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR 823 (1504)
.++....|+.+.++..+.+.+| |++++.|+... ......+|.-+|..|+.+..+..+...+.+++.+|+.+++...+
T Consensus 928 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1005 (1062)
T KOG4229|consen 928 WFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYT 1005 (1062)
T ss_pred HHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhh
Confidence 9999999999999999999999 88888776433 22344678889999999999999999999999999999887666
Q ss_pred HHH
Q 000443 824 NEF 826 (1504)
Q Consensus 824 ~~~ 826 (1504)
..+
T Consensus 1006 ~~~ 1008 (1062)
T KOG4229|consen 1006 MIF 1008 (1062)
T ss_pred hhH
Confidence 554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.96 E-value=1.7e-28 Score=293.12 Aligned_cols=240 Identities=19% Similarity=0.366 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhhhhhc-CCCcccceehHHHHHHHHHHHHhhhhcCCCCCCcccccCCcccchhcccccccCCCCCCCC
Q 000443 1158 TSIFDRIIQTISGAIEVH-DNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGI 1236 (1504)
Q Consensus 1158 ~~ll~~ii~~I~~~v~~~-~d~~~l~fWLSN~~~LL~~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1236 (1504)
..|+.++.+.++.++..+ ++-..|+|||+|++++|||++++-.-+
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~ls---------------------------------- 640 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRDLS---------------------------------- 640 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccchh----------------------------------
Confidence 789999999999999988 555699999999999999999941100
Q ss_pred CcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCcccccccCCCcchhhhhh
Q 000443 1237 PFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLIKGRSQANAVAQQ 1316 (1504)
Q Consensus 1237 ~~~~~~~~~~~~e~~~v~~~~~~~~fkqqL~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1316 (1504)
.+.+ +. +..|..+|+.+|..|+.+++.+|++-+...+. .. .
T Consensus 641 ---~~~~-----~a------------q~vla~~vq~aFr~LV~clqsel~~~~~afLd-en------------------~ 681 (1629)
T KOG1892|consen 641 ---RITL-----DA------------QDVLAHLVQMAFRYLVHCLQSELNNYMPAFLD-EN------------------S 681 (1629)
T ss_pred ---heeh-----hH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc------------------c
Confidence 0000 00 24488888999999999999999887654331 10 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHhhcC--CCccccchhhHHHhhHHHHHHHHhhc
Q 000443 1317 ALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEFVKAGLAELEQWCHDS 1394 (1504)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~LEeW~~~~ 1394 (1504)
.......++|..|+..|.+|+.|+|+..|+.|+|+|||||||+++||+|+.. ..+|+--||--|++.|..||.||...
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1223456799999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred CcccccchhHHhHHHHHHHHHHhhcCCCccCHHHHHhccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHhhcc
Q 000443 1395 TEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVSCKLLIISCAI 1474 (1504)
Q Consensus 1395 ~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~vs~~~i~~v~~~~~~~ 1474 (1504)
|++.+++ |||..|+||++||+++|....|+..+ ...|.+||+.|+.+||..|++++.|. ++|.+++..+-.+..+.
T Consensus 762 GlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhh
Confidence 9999988 99999999999999998777777777 68999999999999999999999995 99999999887655544
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=7.1e-28 Score=237.56 Aligned_cols=105 Identities=36% Similarity=0.653 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhHHHHHHhhcCCCccccchhhHHHhhHHHHHHHHhhcCcccccchhHHhHHHHHHHHHHhhcCCCccCHH
Q 000443 1348 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLK 1427 (1504)
Q Consensus 1348 Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LEeW~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1427 (1504)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.. ++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999995544 67999999999999999766677666
Q ss_pred HHHhccCCCCCHHHHHHHHhcCcCCCCC
Q 000443 1428 EITNDLCPVLSIQQLYRISTMYWDDKYG 1455 (1504)
Q Consensus 1428 ~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e 1455 (1504)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 66 7999999999999999999999987
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.50 E-value=8e-11 Score=159.84 Aligned_cols=451 Identities=12% Similarity=0.095 Sum_probs=228.3
Q ss_pred HHHHHHHHcCCCHHHHHHhhce--eEEEeCCceEeccCCHhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEE
Q 000443 353 HLNMTAELLRCDAQSLEDALIK--RVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSII 430 (1504)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l~~--r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~I 430 (1504)
.+..+-..||+++++....+-- =.+..|+=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 4566778899998877654321 11122222222211444554444333333311 2222222222333221 12245
Q ss_pred EEeeccCCCCCCCCChhHHHhhhhhhHHHhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhh
Q 000443 431 GVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEA 510 (1504)
Q Consensus 431 giLDi~GFE~f~~NsfEQlcINyaNEkLq~~f~~~vf~~eq~~y~~E~i~~~~i~f~dn~~~ldlie~k~~Gil~lLdee 510 (1504)
+-.++.|+..+ | .++|=+-|...-...+|. ..-.+...+++|+ .+-+.+|.+++-...=||..
T Consensus 401 ~e~v~k~q~~~------q--~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQNVE------Q--VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcchHH------H--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 55666676533 3 777777787766677775 5667778888887 45555666665322122222
Q ss_pred hcCCCCchHH----H-HHHHHHHhcCCCCCCCCC----CCCCceEEEecccchhccccchhhhccchhHHHHHHHH----
Q 000443 511 CMFPKSTHET----F-SQKLCQTFAKNNRFSKPK----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALL---- 577 (1504)
Q Consensus 511 ~~~p~~~d~~----~-~~kl~~~~~~~~~~~~p~----~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll---- 577 (1504)
.|=+. | .+||.+-| +|.-|..-- --+-.|..-||+=+ -=.+.+-++|=. .+..+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHH
Confidence 11111 1 13343333 344443210 01235666677211 112222333322 222222
Q ss_pred ---HhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccchhhhHhhccc
Q 000443 578 ---TAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCG 654 (1504)
Q Consensus 578 ---~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~~v~~QLr~~ 654 (1504)
.+|...|+..|+.... ++.++|.... +.+....+....-+.+ |+|.-||-..++..-....|+.+|+|+
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2334445554443210 1222222221 3334445555555555 999999999888888889999999999
Q ss_pred chhHHHHHHhhCCCcccchhHHHHhhcccccccccCC-----CchHHHHHHHhhhcCCCcceeccceeec---cchhh--
Q 000443 655 GVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGN-----YDDQVACQMILDKKGLKGYQIGKTKVFL---RAGQM-- 724 (1504)
Q Consensus 655 gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~iG~TkVF~---r~g~~-- 724 (1504)
+ .+.|...-.| +..+..+..++.. ......+. .-.+.....++..+....-.|=+-=|+. ++|.+
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~ 678 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDA 678 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCH
Confidence 9 8888776665 6667777766654 21111111 1123333444444432222221111222 22322
Q ss_pred -HHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHh--hHHHH-----HHHHHHHh-------hHHHHHH
Q 000443 725 -AELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFL--RGEMA-----RKLYEQLR-------REAAALK 789 (1504)
Q Consensus 725 -~~LE~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~--Rg~la-----Rk~~~~~r-------~~~AAi~ 789 (1504)
..|..+| ++..--.|--+..||..|..|..++...-.+.... .|+.. ++.+..+. -...-+.
T Consensus 679 ~lvl~QLr---cngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvF 755 (1930)
T KOG0161|consen 679 PLVLNQLR---CNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVF 755 (1930)
T ss_pred HHHHHHhh---ccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeee
Confidence 2233332 33333445556678988888876654333222211 12221 11111111 1111122
Q ss_pred HhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000443 790 IQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRT-KAAIIAQAQWRCHQAYSYY 851 (1504)
Q Consensus 790 IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~~~~~~r~~-~aA~~IQ~~~R~~~~r~~~ 851 (1504)
..+-+-+++.-.+-..+...++.+|+.+||+++|+.|..+.+. .|..+||+++|.|...+.|
T Consensus 756 fkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 756 FKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3333444555555556667788999999999999999877665 5777999999999888887
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.63 E-value=4.6e-08 Score=107.18 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.4
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhchHHhhhc-cccccCCC
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 210 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snpilEaFG-NAkT~rN~ 210 (1504)
||+.+..++..|+ ++.|+||+..|+||||||.|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8888889999987 5799999999999999998743110 00010011232 3778888899999 99999999
Q ss_pred CCCccccEEEEEecCCCCcc
Q 000443 211 NSSRFGKFVEIQFDKNGRIS 230 (1504)
Q Consensus 211 NSSRfGk~~~l~f~~~g~i~ 230 (1504)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654443
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.41 E-value=0.00018 Score=95.09 Aligned_cols=129 Identities=23% Similarity=0.126 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHh-hHHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHHHH
Q 000443 748 TYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR-REAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEF 826 (1504)
Q Consensus 748 ~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~~~~r-~~~AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~~~ 826 (1504)
+.+.-.|-..+...++.||+.|||+..|++|.... +.+++..+|..+|-+. +..|-..-.+.+.+|+.+|....|+.+
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~r~~~ 812 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR-LVDYELKWRLFIKLQPLLSLLGSRKEY 812 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh-hcccchHHHhHHHhhHHhHHHhhHHHH
Confidence 45666666677788888888888888888775533 3334444444444442 222233334567888888888888777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000443 827 RLRKRTKAAIIAQ-AQWRCHQAYSY--YKKLQRAIIVSQCGWRCRVARRELRKLKM 879 (1504)
Q Consensus 827 ~~~r~~~aA~~IQ-~~~R~~~~r~~--~~~~~~a~i~iQ~~~R~~~arkel~~lr~ 879 (1504)
+... .....+| ..++....+.. -....++.+.+|+.||...+++.+..++.
T Consensus 813 ~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k 866 (1463)
T COG5022 813 RSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKK 866 (1463)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 6543 3445566 44444444442 33455678888888888888887776664
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.38 E-value=7.5e-07 Score=113.71 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=91.2
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHh--------hHHHHHHHhhhHHHHHHHHhhhh
Q 000443 734 VLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR--------REAAALKIQTNFRAYVAQRSYLT 805 (1504)
Q Consensus 734 ~l~~aa~~IQ~~~R~~l~Rk~~~~~r~a~i~IQa~~Rg~laRk~~~~~r--------~~~AAi~IQ~~~Rg~l~Rr~y~~ 805 (1504)
....++..||+.+|+|..|+.|+-+|.-++.||+.+||+..|+.|..+- --.++.++|+.+|||+.|+....
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3457889999999999999999999999999999999999999987642 12456677777888777777666
Q ss_pred hhhhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 806 VRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKL 854 (1504)
Q Consensus 806 ~r~a~i~IQs~~Rg~~aR~~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~~ 854 (1504)
.-.+++.||...|-+..-++....+.++|+++||+.+|.+.++.+|+++
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6666677777777665554444455566777777777777666666544
No 29
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.37 E-value=2.1e-06 Score=109.94 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=80.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000443 784 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQC 863 (1504)
Q Consensus 784 ~~AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~ 863 (1504)
..+++.||+.+|+|..|+.|..+|.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|.....+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999 333 778999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000443 864 GWRCRVARR 872 (1504)
Q Consensus 864 ~~R~~~ark 872 (1504)
..|+..+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999988
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.26 E-value=2.7e-06 Score=69.10 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=37.8
Q ss_pred CcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEEEecc
Q 000443 10 GSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVVTSVS 50 (1504)
Q Consensus 10 g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~~~~~ 50 (1504)
+.+|||||++++|+.|+|++.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999988764
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.97 E-value=1.9e-05 Score=101.37 Aligned_cols=116 Identities=24% Similarity=0.326 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHhhhhhhh----------hHHHHHHhHhHHHHHHHHHHH
Q 000443 760 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRS----------SAMILQTGLRAMVARNEFRLR 829 (1504)
Q Consensus 760 ~a~i~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~Rg~l~Rr~y~~~r~----------a~i~IQs~~Rg~~aR~~~~~~ 829 (1504)
.++..||..+|||..|+-+...| .-+++||+.+|||..|+.|.++-. ++..+|..+||+..|+...+.
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 35556666666666666665555 235566666666666666654432 234455555555555544332
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000443 830 KRTKAAIIAQAQWRCHQAY--SYYKKLQRAIIVSQCGWRCRVARRELRKLKM 879 (1504)
Q Consensus 830 r~~~aA~~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~arkel~~lr~ 879 (1504)
+.||+.||...|-|..- ..|.++.++++.||+.+|.+.++.+++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 23677778777777665 5677788888888888888888877766543
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.71 E-value=0.045 Score=69.26 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000443 1318 LIAHWQSIVKSLNNYLKIMRANYVPSFLI 1346 (1504)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~ 1346 (1504)
|..++...+..+++++..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45678888899999998888777665443
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.49 E-value=0.043 Score=69.41 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 872 RELRKLKMAARETGALQEAKNKLEKRVEELTWRL---QIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV 944 (1504)
Q Consensus 872 kel~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l---~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l 944 (1504)
|++.+-|.++++...+++.. ..++.++...+ ...+++..+-.+.+..|...+++++++|+.+++-+++++
T Consensus 283 rel~raR~e~keaqe~ke~~---k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERY---KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444433 33333333333 233333333333444455555555555555554444433
No 34
>PRK11637 AmiB activator; Provisional
Probab=97.34 E-value=0.042 Score=68.48 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD-------AEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~e-------lE~~~~~Lq~el~~Leeki~~Le~En~ 1046 (1504)
.++++.....+|.....+++.+..+++..+.+++.+..+++....+ ++.+....+.++..++.....|++.+.
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443333 333333334444444444444444444
Q ss_pred HH
Q 000443 1047 VL 1048 (1504)
Q Consensus 1047 ~L 1048 (1504)
.+
T Consensus 251 ~l 252 (428)
T PRK11637 251 RA 252 (428)
T ss_pred HH
Confidence 33
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.30 E-value=2.1 Score=60.58 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=4.4
Q ss_pred eeccCCCCC
Q 000443 433 LDIYGFESF 441 (1504)
Q Consensus 433 LDi~GFE~f 441 (1504)
|.|.||-+|
T Consensus 5 l~l~nf~s~ 13 (1164)
T TIGR02169 5 IELENFKSF 13 (1164)
T ss_pred EEEeCeeeE
Confidence 445555544
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=0.68 Score=61.21 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 976 ~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+++..+..+.+.++..|+++++.++..+..++.+.++...++.+.+.+....+.++..+..+++....+++.|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555666666666666666666666666666666666666666666666666677766666666653
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.076 Score=69.13 Aligned_cols=20 Identities=0% Similarity=-0.026 Sum_probs=12.2
Q ss_pred hhcccChHHHHHHHHHHHHH
Q 000443 307 DIVGISDQEQEAIFRVVAAI 326 (1504)
Q Consensus 307 ~~lg~~~~~~~~i~~ilaai 326 (1504)
-.+||--+-.+-+|=.+-++
T Consensus 45 ~~~~~r~e~~~p~wl~~~~~ 64 (697)
T PF09726_consen 45 FMLEFRFEYLWPFWLLLRSV 64 (697)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 34566666666666555554
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.054 Score=67.51 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=11.4
Q ss_pred CCCccccchhhHHHhhHHHHHHH
Q 000443 1368 RRECCSFSNGEFVKAGLAELEQW 1390 (1504)
Q Consensus 1368 r~~~cs~s~G~qIr~nls~LEeW 1390 (1504)
.|+-.-|=-|.-++-+=-+.--|
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GW 1030 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGW 1030 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccc
Confidence 35556665665554443333333
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.5 Score=61.37 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~L 1041 (1504)
...+.|+.|.+.++.++...+..+.+++.++..++.+..++..++...+.....++.++.....+....
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555555555554444444444444444444444433333
No 40
>PRK11637 AmiB activator; Provisional
Probab=97.12 E-value=0.14 Score=63.98 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~L 1041 (1504)
+..+..+.+.++.+++.+.+.++..|.++
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.10 E-value=0.69 Score=61.18 Aligned_cols=72 Identities=18% Similarity=0.424 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 980 AEVENLKGLLQSQTQTADEAKQAFTVSEAKN-GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 980 ~e~~~Le~ei~~l~~~l~ele~~l~ele~~~-eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
.+....+..+..++.....+++.+..++++. ..+..++.+.+.++..|+.+++.+++.+..|.+|.+.++++
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333 33444444444455555555555555444444444444433
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.08 E-value=0.62 Score=65.71 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1012 el~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+++..+...+.+..+++.++.+++.++..++.+.+.+++
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555544
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.06 E-value=0.16 Score=66.15 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000443 1030 SVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1030 el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+++-++..+..-+.|+..|+++
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555553
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=1.2 Score=59.23 Aligned_cols=47 Identities=32% Similarity=0.288 Sum_probs=24.0
Q ss_pred hHHhHHHHHHHHHHhhcCCCccCHHHHHhcc---CCCCCHHHHHHHHhcCcCC
Q 000443 1403 WDELRHIRQAVGFLVIHQKPKKTLKEITNDL---CPVLSIQQLYRISTMYWDD 1452 (1504)
Q Consensus 1403 ~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~---C~~Ls~~Qi~kil~~Y~~d 1452 (1504)
.+.|.|-.+-+.|-+.| ++.+|..| .++ =-.||+.=|+=.|.+|+|.
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCC
Confidence 34555555555555554 44555544 121 1345555566666666653
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.00 E-value=3.6 Score=57.95 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHHHhh
Q 000443 1379 FVKAGLAELEQWCHD 1393 (1504)
Q Consensus 1379 qIr~nls~LEeW~~~ 1393 (1504)
.++-.+..++.=+..
T Consensus 946 ~~~~~i~~le~~i~~ 960 (1163)
T COG1196 946 ELEREIERLEEEIEA 960 (1163)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444333
No 46
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=1.1 Score=56.51 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=6.3
Q ss_pred HHHHHhcCcC
Q 000443 1442 LYRISTMYWD 1451 (1504)
Q Consensus 1442 i~kil~~Y~~ 1451 (1504)
+.+++-||.+
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 5556667765
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.22 Score=64.44 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=22.6
Q ss_pred cCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000443 125 FGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1504)
Q Consensus 125 ~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1504)
..+.+||-=| |+|=.|||||- |+.-++++=|
T Consensus 20 I~~fDp~FNA-------------------ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNA-------------------ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred ccCCCcccch-------------------hhcCCCCCchH----HHHHHHHHHc
Confidence 4677888655 89999999996 5555566533
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.88 E-value=0.13 Score=53.83 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccch
Q 000443 888 QEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPV 967 (1504)
Q Consensus 888 ~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~ 967 (1504)
......++.++.++..+.. .+..++..|+..+..++.+++.+...+......+.....
T Consensus 13 ~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~----------- 70 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK----------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------
Confidence 3344445555555544444 344556666666666766666666665433322221100
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 968 IIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 968 l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
....++.|...+..|+.+++.....+.+...++.+. ..+....++++..|..+...++.++..|....
T Consensus 71 ---~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~-------d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 71 ---RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA-------DVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred ---HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111222444444444444444444444444444444 44444444445555555555555555544433
No 49
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=1.1 Score=59.30 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=6.6
Q ss_pred chhhHHHHHH
Q 000443 721 AGQMAELDAR 730 (1504)
Q Consensus 721 ~g~~~~LE~~ 730 (1504)
.|.+.+||..
T Consensus 250 ~GmLEYLEDI 259 (1293)
T KOG0996|consen 250 EGMLEYLEDI 259 (1293)
T ss_pred chHHHHHHHH
Confidence 4667777764
No 50
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.79 E-value=0.013 Score=72.24 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCHHHHHHhh
Q 000443 353 HLNMTAELLRCDAQSLEDAL 372 (1504)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l 372 (1504)
.++.|-.-+|.++++.+..+
T Consensus 248 ~V~~Am~vIgFs~eEVe~v~ 267 (1001)
T KOG0164|consen 248 AVQKAMRVIGFSEEEVESVL 267 (1001)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 46666677788887777654
No 51
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.79 E-value=0.0013 Score=45.13 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=12.9
Q ss_pred HHHHHHhhhHHHHHHHHhh
Q 000443 785 AAALKIQTNFRAYVAQRSY 803 (1504)
Q Consensus 785 ~AAi~IQ~~~Rg~l~Rr~y 803 (1504)
.||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777776665
No 52
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.73 E-value=0.028 Score=74.92 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHhhHHHHHHHHHHHhhHHH---HHHHhhhHHHHHHHHhhhhh-------hhhHHHHHHhHhHHHH--HHHHHHHH
Q 000443 763 VILQSFLRGEMARKLYEQLRREAA---ALKIQTNFRAYVAQRSYLTV-------RSSAMILQTGLRAMVA--RNEFRLRK 830 (1504)
Q Consensus 763 i~IQa~~Rg~laRk~~~~~r~~~A---Ai~IQ~~~Rg~l~Rr~y~~~-------r~a~i~IQs~~Rg~~a--R~~~~~~r 830 (1504)
+..|+.+||...|.....+-...+ ..++|+..||+..|..+... -..+..+|+.|||++. -+.-...-
T Consensus 511 is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~ 590 (1401)
T KOG2128|consen 511 ISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDS 590 (1401)
T ss_pred hhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHH
Confidence 345666666655544332211111 12346666666655544322 1234556666666653 11111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHH
Q 000443 831 RTKAAIIAQAQWRCHQAYSYYKKL-------QRAIIVSQCGWRCRVARRELRKLKM 879 (1504)
Q Consensus 831 ~~~aA~~IQ~~~R~~~~r~~~~~~-------~~a~i~iQ~~~R~~~arkel~~lr~ 879 (1504)
...-++.+|++.||+++|+.|.+. ..+++.+|++.|....|+.|+.+..
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 234455666666666666554332 2466677777777777666665543
No 53
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.71 E-value=0.032 Score=74.38 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=75.9
Q ss_pred HHHHHhhhHHHHHHHH-----hhhHHHHHHHHhhHHHHHHHHHHH----h-hHHHHHHHhhhHHHHHH----HHhhhhhh
Q 000443 742 IQRQTRTYIARKEFIL-----LRNAAVILQSFLRGEMARKLYEQL----R-REAAALKIQTNFRAYVA----QRSYLTVR 807 (1504)
Q Consensus 742 IQ~~~R~~l~Rk~~~~-----~r~a~i~IQa~~Rg~laRk~~~~~----r-~~~AAi~IQ~~~Rg~l~----Rr~y~~~r 807 (1504)
.|..+||...|..--. -..-...+|+..||+..|-.+... + ..-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 6777777766653211 112233448888888887766542 2 33466778888888884 11223345
Q ss_pred hhHHHHHHhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 808 SSAMILQTGLRAMVARNEFRLRKR-----TKAAIIAQAQWRCHQAYSYYKKLQ 855 (1504)
Q Consensus 808 ~a~i~IQs~~Rg~~aR~~~~~~r~-----~~aA~~IQ~~~R~~~~r~~~~~~~ 855 (1504)
..++.+|+..||+++|+.+....+ ..+.+.||++.|....|..|+.+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 567888888888888888765433 356778888888888888887765
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.71 E-value=1 Score=63.61 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.1
Q ss_pred EEEecCCCCCCchhhHHH
Q 000443 151 SILVSGESGAGKTETTKM 168 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~ 168 (1504)
..+|.|++|||||.....
T Consensus 25 ~~~i~G~NGsGKS~ll~a 42 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDA 42 (1179)
T ss_pred cEEEECCCCCChhHHHHH
Confidence 678999999999986543
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.53 Score=58.18 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 989 LQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQ 1028 (1504)
Q Consensus 989 i~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq 1028 (1504)
..-|+....++...+.+..+.+..++.++..++.+.....
T Consensus 441 ~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k 480 (581)
T KOG0995|consen 441 LETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKK 480 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.59 E-value=0.39 Score=59.90 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN----GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~----eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~ 1047 (1504)
..++.+|+.++..+++.+++...+...++.++...+..+ .+..+++.+++..+.-++.+.+.+.++.++|.....+
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555544444444554444333222 2333444455555555555555555555555555555
Q ss_pred HHH
Q 000443 1048 LRQ 1050 (1504)
Q Consensus 1048 Lrq 1050 (1504)
|++
T Consensus 450 Le~ 452 (546)
T PF07888_consen 450 LEQ 452 (546)
T ss_pred HHH
Confidence 554
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.58 E-value=0.38 Score=57.67 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA----EKVSNLESENQV 1047 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Le----eki~~Le~En~~ 1047 (1504)
..++..++.++..+..+++..++++.+++.++..++...+++..+..+++.++.+++...+..+ .++..|+.+.+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554444444444444444444444443333332221 145556666666
Q ss_pred HHHH
Q 000443 1048 LRQQ 1051 (1504)
Q Consensus 1048 Lrqq 1051 (1504)
|+..
T Consensus 288 Le~~ 291 (325)
T PF08317_consen 288 LEKL 291 (325)
T ss_pred HHHH
Confidence 6543
No 58
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.54 E-value=0.0011 Score=87.73 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCccccch-hhhHhhcccchhHHHHHHhhCCCcccchhHHHHhhccc
Q 000443 605 IGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENF-NVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1504)
Q Consensus 605 v~~~f~~~l~~Lm~~l~~t~~hfIrCIkPN~~~~p~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1504)
++..++-++.+....|-...+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 45556667888888888899999999999999999999988 89999999999999999999999999999988877643
Q ss_pred ccccccCCCchHHHHHHHhhhcCCCcceeccceeeccc
Q 000443 684 APEVLEGNYDDQVACQMILDKKGLKGYQIGKTKVFLRA 721 (1504)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~iG~TkVF~r~ 721 (1504)
.-.....+.-.+.+|..++.+-+.+.+..+.+.++.+.
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 761 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRY 761 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhccccccc
Confidence 21111111112456677777777777777777777654
No 59
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.43 E-value=0.54 Score=51.85 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000443 1011 GELTKKLKDAEKRVDELQDSVQRL---AEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1011 eel~~kl~elE~~~~~Lq~el~~L---eeki~~Le~En~~Lrqq 1051 (1504)
+++++++..+-.++.-|+.++.+- -+.++.|++|-..|+|.
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333322 23445556665666554
No 60
>PRK09039 hypothetical protein; Validated
Probab=96.41 E-value=0.39 Score=57.88 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
.+...+..+....+....+...++..+..+++.++.+...++..+...|.+..+.+.++++++.++..
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444443
No 61
>PRK02224 chromosome segregation protein; Provisional
Probab=96.35 E-value=4 Score=56.00 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=7.6
Q ss_pred eeeccchhhHHH
Q 000443 716 KVFLRAGQMAEL 727 (1504)
Q Consensus 716 kVF~r~g~~~~L 727 (1504)
-||++.|.+..+
T Consensus 132 ~~~i~Qge~~~~ 143 (880)
T PRK02224 132 CAYVRQGEVNKL 143 (880)
T ss_pred eeEeeccChHHH
Confidence 367777776543
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.31 E-value=1 Score=50.94 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 1011 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~e 1011 (1504)
+...|..+...++.+...++.++.++...+..++.+..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333
No 63
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.31 E-value=0.0045 Score=42.50 Aligned_cols=19 Identities=47% Similarity=0.569 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 000443 737 NAARKIQRQTRTYIARKEF 755 (1504)
Q Consensus 737 ~aa~~IQ~~~R~~l~Rk~~ 755 (1504)
++|++||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555554
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.30 E-value=1.3 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELT-------KKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~-------~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
.++..|+.++.++..+.+.+.++..++-.+...++...-..+ ..+.+....+..+...++....-..+|..|.
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444443332221 2233334445555555555555555666666
Q ss_pred HHHHHH
Q 000443 1046 QVLRQQ 1051 (1504)
Q Consensus 1046 ~~Lrqq 1051 (1504)
.+|+++
T Consensus 182 s~LEeq 187 (193)
T PF14662_consen 182 SRLEEQ 187 (193)
T ss_pred HHHHHH
Confidence 666654
No 65
>PRK09039 hypothetical protein; Validated
Probab=96.29 E-value=0.35 Score=58.25 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 888 QEAKNKLEKRVEELTWRLQIEKR 910 (1504)
Q Consensus 888 ~~~~~~LE~~l~el~~~l~~e~~ 910 (1504)
.++...++.++.++-.-+..+..
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~ 74 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQ 74 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=96.29 E-value=1.8 Score=59.42 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 000443 1036 EKVSNLESENQVLR 1049 (1504)
Q Consensus 1036 eki~~Le~En~~Lr 1049 (1504)
..+.+++.+...++
T Consensus 412 ~~l~~l~~~~~~l~ 425 (880)
T PRK02224 412 DFLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.28 E-value=0.63 Score=58.17 Aligned_cols=15 Identities=33% Similarity=0.786 Sum_probs=7.0
Q ss_pred HHhhCCCcccchhHH
Q 000443 662 ISCAGYPTRRTFYEF 676 (1504)
Q Consensus 662 i~~~gyp~r~~~~~F 676 (1504)
|.+.||.+-..|--|
T Consensus 42 iFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 42 IFKVGWSSTRDYYTF 56 (546)
T ss_pred EeecCCCchhheeeE
Confidence 344555554444433
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.27 E-value=1.4 Score=53.28 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000443 890 AKNKLEKRVEELTWRL 905 (1504)
Q Consensus 890 ~~~~LE~~l~el~~~l 905 (1504)
...+|+.++.+++..+
T Consensus 60 ~~~kL~~~lk~~e~~i 75 (420)
T COG4942 60 QRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.26 E-value=10 Score=53.67 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=15.7
Q ss_pred HHhcCcCCCCCCCCCCHH-HHHHHHHHhh
Q 000443 1445 ISTMYWDDKYGTHSVSSE-VSCKLLIISC 1472 (1504)
Q Consensus 1445 il~~Y~~d~~e~~~vs~~-~i~~v~~~~~ 1472 (1504)
....|+..+.. ..+|++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455333333 256666 8888877665
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.25 E-value=0.8 Score=59.30 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
.++..|..+...++.++..+...+.+++.... +..++..++.+++..+....+.+..+..+...++.+...|+
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333332221 22233334444444444444444444444444444444444
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.25 E-value=0.59 Score=60.54 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQ 990 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~ 990 (1504)
.+.+.+++.+++.++..+.
T Consensus 305 ~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444
No 72
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.20 E-value=1.4 Score=50.68 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLK-----------DAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~-----------elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
+.-+..+++|+..++-+++++..+..+.+++-+++..+..+...-.. +.-.-++..|.-+..||.++++
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666665555555555444443332221 1223366677788888899999
Q ss_pred HHHHHHHHHHHH
Q 000443 1041 LESENQVLRQQA 1052 (1504)
Q Consensus 1041 Le~En~~Lrqq~ 1052 (1504)
|--|...|-|-.
T Consensus 213 Lm~EirnLLQle 224 (401)
T PF06785_consen 213 LMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHhh
Confidence 888888877643
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.16 E-value=0.97 Score=47.43 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 996 ADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 996 l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~ 1046 (1504)
+..++.++......+.....++.++..+..++...+..|+.....++....
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333333333333333333434444444444444433333333333
No 74
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.15 E-value=3.1 Score=52.54 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 792 TNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQ 855 (1504)
Q Consensus 792 ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~~~ 855 (1504)
+.+--|+.+.+|.+...++..+= .-+. +..-+..+.+++|++.|||++|+++++..
T Consensus 781 ~kVn~WLv~sRWkk~q~~a~sVI------KLkN--kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 781 AKVNKWLVRSRWKKSQYGALSVI------KLKN--KIIYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHhHHHHhhhhhhhee------ehhh--HHHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 34667888888876554322110 0011 11112356778999999999999887654
No 75
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.11 E-value=0.75 Score=49.61 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 978 L~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+..|++.|+.....+++....+-.+...++++.+.+..++..++.+...+..+.+.+..+..+|..++..|+.+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 33344444444444444444444444444444444555555555555555555555555555555555555544
No 76
>PRK03918 chromosome segregation protein; Provisional
Probab=96.11 E-value=0.82 Score=62.61 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.7
Q ss_pred EEecCCCCCCchhhHHHH
Q 000443 152 ILVSGESGAGKTETTKML 169 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~ 169 (1504)
-+|+|++|||||.....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 569999999999876533
No 77
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.96 E-value=0.0058 Score=72.76 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=43.4
Q ss_pred eCCCCCCCCCCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000443 102 VNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 166 (1504)
Q Consensus 102 vNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 166 (1504)
+|||...| |+......++. +.+||-|-| -+.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999998 78766555543 456776544 3667777889999999999999999754
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.95 E-value=1.3 Score=57.72 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000443 886 ALQEAKNKLEKRVEELTWRLQIEKRLRTDLE---EAKSQEIAKLQEALHA 932 (1504)
Q Consensus 886 ~l~~~~~~LE~~l~el~~~l~~e~~~~~~le---e~k~~E~~~L~~~le~ 932 (1504)
.++..++.++.+++.|+.++.+.....++++ ..+..|.++|+..+..
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777766665554443332 2333444444444433
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.88 E-value=0.95 Score=58.36 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 000443 1269 FLEKIYGMIRDN 1280 (1504)
Q Consensus 1269 ~~~~iy~~l~~~ 1280 (1504)
-++++-.-+++.
T Consensus 415 amekLq~~f~~~ 426 (617)
T PF15070_consen 415 AMEKLQSRFMDL 426 (617)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 80
>PRK03918 chromosome segregation protein; Provisional
Probab=95.88 E-value=2 Score=58.78 Aligned_cols=8 Identities=25% Similarity=1.095 Sum_probs=3.4
Q ss_pred eeccchhh
Q 000443 717 VFLRAGQM 724 (1504)
Q Consensus 717 VF~r~g~~ 724 (1504)
||++.|.+
T Consensus 130 ~~~~Qg~~ 137 (880)
T PRK03918 130 IYIRQGEI 137 (880)
T ss_pred EEEeccch
Confidence 44444443
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.88 E-value=0.66 Score=53.04 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~ 1047 (1504)
+..++.+++.........+..|+..+..|+.++..
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444333
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.87 E-value=0.2 Score=57.33 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQT 993 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~ 993 (1504)
+..|+.++...+....+..
T Consensus 94 i~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.85 E-value=10 Score=50.05 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 978 L~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~--eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+....++|++.-..|.++.+.++++++.++.+. ..++.++-.+++++..++.+..-.+.++.+|..||..|.-
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555544 3444555555555555555555555555566666555543
No 84
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=1.5 Score=53.34 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 921 QEIAKLQEALHAMQLRVDDANSLVIKERE 949 (1504)
Q Consensus 921 ~E~~~L~~~le~l~~ele~~~~~l~~e~~ 949 (1504)
.++..|+.+.++|+.+.+.+..++...++
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtke 71 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKE 71 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444333
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.73 E-value=1.9 Score=51.18 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000443 1037 KVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1037 ki~~Le~En~~Lrqq 1051 (1504)
++..|....+.|++.
T Consensus 272 Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 272 EIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555543
No 86
>PTZ00014 myosin-A; Provisional
Probab=95.68 E-value=0.018 Score=76.05 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHHHH
Q 000443 786 AALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 825 (1504)
Q Consensus 786 AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR~~ 825 (1504)
.+..||++||||++|++|++.+.+++.||+.+||+++++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777776666666666667777776666543
No 87
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.64 E-value=6.9 Score=46.63 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLE 916 (1504)
Q Consensus 883 e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~le 916 (1504)
+...+.-....+...+.+++.+++.+...+..++
T Consensus 69 eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 69 EKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666666555544444443
No 88
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.63 E-value=1.4 Score=52.71 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 992 QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDS 1030 (1504)
Q Consensus 992 l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~e 1030 (1504)
|++.+..++..+.++...++.++.++.++-.++..+.++
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~ 523 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEE 523 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666666666665555555544443
No 89
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.62 E-value=6.6 Score=46.30 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTV-------SEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~e-------le~~~eel~~kl~elE~~~~~Lq~el~~Lee 1036 (1504)
..++.+.+|+.......+....++......+.. -.+...+.+.+++.+|.+...++.++.++|.
T Consensus 210 ~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 210 NAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455544444444444444444444333 3333344444444455555555555554444
No 90
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.62 E-value=0.98 Score=56.50 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHHHhhhHHHHHHHHhhhHHHHH
Q 000443 742 IQRQTRTYIARKEFILLRNAAVIL 765 (1504)
Q Consensus 742 IQ~~~R~~l~Rk~~~~~r~a~i~I 765 (1504)
+--..-.|+.|-+|+........+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456688888887776655444
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.62 E-value=10 Score=48.46 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000443 891 KNKLEKRVEELTWRLQIE 908 (1504)
Q Consensus 891 ~~~LE~~l~el~~~l~~e 908 (1504)
....+..+.+++..|+.+
T Consensus 286 lSqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTL 303 (1265)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.60 E-value=18 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=17.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccccc
Q 000443 1452 DKYGTHSVSSEVSCKLLIISCAIFIS 1477 (1504)
Q Consensus 1452 d~~e~~~vs~~~i~~v~~~~~~~~~~ 1477 (1504)
|+-+ .++|+=+..|-++++.++|.
T Consensus 1154 DEiG--~L~~~Nv~~l~~~~~~nnI~ 1177 (1201)
T PF12128_consen 1154 DEIG--KLHPNNVKKLLDMCNSNNIS 1177 (1201)
T ss_pred hhhc--cCChHHHHHHHHHHHhCCce
Confidence 5555 57888888888888877765
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.58 E-value=2.3 Score=48.05 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD 1019 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~e 1019 (1504)
.++..++.+...|+.++..+......++.++..++.....++..+.+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555544444444433
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.55 E-value=7.4 Score=50.60 Aligned_cols=12 Identities=33% Similarity=0.257 Sum_probs=8.0
Q ss_pred cCCCCCHHHHHH
Q 000443 1433 LCPVLSIQQLYR 1444 (1504)
Q Consensus 1433 ~C~~Ls~~Qi~k 1444 (1504)
-++.||+.||.+
T Consensus 933 DFS~ls~h~~K~ 944 (980)
T KOG0980|consen 933 DFSSLSLHQLKT 944 (980)
T ss_pred ccccccHHHHHH
Confidence 347777777764
No 95
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=3.2 Score=47.47 Aligned_cols=68 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 881 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAAR 952 (1504)
Q Consensus 881 a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~ 952 (1504)
..++..+++....+++++..|...++.-..... ....++.+++..+..++.++++++..+.+..+.+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~----~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKID----ELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555543222222 23344455555555666666666555544444333
No 96
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.48 E-value=11 Score=48.07 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1000 KQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1000 e~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
++....++....+++.+..+++.....|.+++.+.++.+..++.+++.|+|
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444555555555555555555444444
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.43 E-value=22 Score=50.97 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=4.7
Q ss_pred ccceeeccc
Q 000443 713 GKTKVFLRA 721 (1504)
Q Consensus 713 G~TkVF~r~ 721 (1504)
|...-|+++
T Consensus 182 G~f~~~L~a 190 (1486)
T PRK04863 182 GIIPRRLRS 190 (1486)
T ss_pred CCchhhhhc
Confidence 555555554
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.42 E-value=13 Score=48.32 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 000443 894 LEKRVEELTWR 904 (1504)
Q Consensus 894 LE~~l~el~~~ 904 (1504)
|..+++.+..+
T Consensus 92 L~kElE~L~~q 102 (617)
T PF15070_consen 92 LRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 99
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.39 E-value=0.014 Score=42.29 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=16.8
Q ss_pred HHHHHHHhhhHHHHHHHHhhh
Q 000443 784 EAAALKIQTNFRAYVAQRSYL 804 (1504)
Q Consensus 784 ~~AAi~IQ~~~Rg~l~Rr~y~ 804 (1504)
..+|++||+.||||++|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888888873
No 100
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.36 E-value=6.1 Score=46.60 Aligned_cols=10 Identities=30% Similarity=0.225 Sum_probs=4.3
Q ss_pred hccCCCCccc
Q 000443 1292 CIQAPRTSRA 1301 (1504)
Q Consensus 1292 ~i~~~~~~~~ 1301 (1504)
.|.++..+.|
T Consensus 471 aiAaedt~~~ 480 (499)
T COG4372 471 AIAAEDTVGP 480 (499)
T ss_pred CCCCCCCcCC
Confidence 4444444433
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.32 E-value=3.8 Score=49.25 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.6
Q ss_pred cchhHHHH
Q 000443 671 RTFYEFVN 678 (1504)
Q Consensus 671 ~~~~~F~~ 678 (1504)
++..+|+.
T Consensus 14 isL~~FL~ 21 (325)
T PF08317_consen 14 ISLQDFLN 21 (325)
T ss_pred cCHHHHHH
Confidence 55556665
No 102
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.31 E-value=22 Score=50.34 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHhh
Q 000443 1458 SVSSEVSCKLLIISC 1472 (1504)
Q Consensus 1458 ~vs~~~i~~v~~~~~ 1472 (1504)
.+++.-...|..++.
T Consensus 1123 ~ld~~~~~~~~~~~~ 1137 (1179)
T TIGR02168 1123 PLDDANVERFANLLK 1137 (1179)
T ss_pred cccHHHHHHHHHHHH
Confidence 455544444444443
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.27 E-value=2.5 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~ 1052 (1504)
..+.+...++.++..++.++.+|...|..|.+|.
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888999999999998888763
No 104
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.26 E-value=5 Score=57.36 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=16.8
Q ss_pred eEEEecCCCCCCchhhHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~ 170 (1504)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367899999999998766553
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.25 E-value=1.4 Score=62.64 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=4.6
Q ss_pred hhhcccCh
Q 000443 306 MDIVGISD 313 (1504)
Q Consensus 306 l~~lg~~~ 313 (1504)
...+|++.
T Consensus 140 ~~~lGv~~ 147 (1311)
T TIGR00606 140 ISHLGVSK 147 (1311)
T ss_pred HHHhCCCH
Confidence 34566665
No 106
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.19 E-value=7.7 Score=44.42 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1053 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~~ 1053 (1504)
.+.+++....+.++++++.|..|+.|.+.|+.++-
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777777888888888888888888887653
No 107
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.17 E-value=4.5 Score=44.89 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1027 LQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1027 Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+-+.+++|+++..+|..|+..-.+|
T Consensus 162 llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777777777777655443
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.13 E-value=1.7 Score=45.22 Aligned_cols=10 Identities=0% Similarity=0.322 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000443 927 QEALHAMQLR 936 (1504)
Q Consensus 927 ~~~le~l~~e 936 (1504)
+..+..++.+
T Consensus 23 e~~v~~LEre 32 (140)
T PF10473_consen 23 EDHVESLERE 32 (140)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.12 E-value=1.3 Score=56.95 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1011 eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
.....+++.+..+++.+..++..-++...+|+.+.+.+-+
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344455555566666666666666666666665555544
No 110
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.11 E-value=25 Score=49.81 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=4.3
Q ss_pred EeeccCCCCC
Q 000443 432 VLDIYGFESF 441 (1504)
Q Consensus 432 iLDi~GFE~f 441 (1504)
=|.+.||.+|
T Consensus 5 ~i~l~gFKSF 14 (1163)
T COG1196 5 RIELKGFKSF 14 (1163)
T ss_pred EEEEECcccC
Confidence 3444444443
No 111
>PRK01156 chromosome segregation protein; Provisional
Probab=95.09 E-value=2 Score=58.87 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHH
Q 000443 1323 QSIVKSLNNYLKIMRANYVPSFL 1345 (1504)
Q Consensus 1323 ~~il~~L~~~~~~L~~~~V~~~l 1345 (1504)
...+..|+.+...|...+++..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 44566667777777777776644
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.09 E-value=6 Score=43.74 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 976 NSLTAEVENLKGLLQSQTQTADEAKQAFT 1004 (1504)
Q Consensus 976 ~eL~~e~~~Le~ei~~l~~~l~ele~~l~ 1004 (1504)
++|..++..++..+++...++..++..+.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554433
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.02 E-value=6.6 Score=51.88 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1008 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 1008 ~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
+..+++.+++.+++.++..++.+++.+++.+..++.+..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444333
No 114
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.98 E-value=4.3 Score=47.42 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 991 SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 991 ~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
.|..++-+++.+....-.+++++...+...+..-..|+.++.+++++..
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444334444444444444433
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.93 E-value=13 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1020 AEKRVDELQDSVQRLAEKVSNLE 1042 (1504)
Q Consensus 1020 lE~~~~~Lq~el~~Leeki~~Le 1042 (1504)
.+++..+|..+-..|+..|..++
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.92 E-value=2.7 Score=49.09 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
..++..|..++..++..+..+-.+.+++...+...+.....+..++.+++.+..+....+.+.++.+.
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666655555555555555555555444444444333
No 117
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.82 E-value=30 Score=49.37 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 000443 887 LQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKE 964 (1504)
Q Consensus 887 l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~~~~~e~~~~~~e 964 (1504)
|......+..+...++..+...+.....+++...+...+++.++.+|+.++..++..+..+...++.........+..
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~ 841 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333444555555555555554444445555555556667778888888888888777777666666655555444433
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.82 E-value=8.6 Score=45.45 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 000443 918 AKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDT---EKINSLTAEVENLKGLLQSQTQ 994 (1504)
Q Consensus 918 ~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~l~~~~---~~i~eL~~e~~~Le~ei~~l~~ 994 (1504)
..++.+..|+.+++.+...+.+++....-.++.+......... ........+.+ .+++.++.++..|+..+..+..
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~-~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEG-IGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666555543333322221111100 00000011111 2233344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 995 TADEAKQAFTVSEAKNGELTKKLKDAE----K---RVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 995 ~l~ele~~l~ele~~~eel~~kl~elE----~---~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+.+++..+....+...+.+-.++.-+= . .++.|-.|..-|.+++..++.|..-+++.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333333332111 1 14555556666666777777776666654
No 119
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.80 E-value=3.4 Score=53.18 Aligned_cols=16 Identities=44% Similarity=0.850 Sum_probs=11.3
Q ss_pred ecccchhccccchhhhcc
Q 000443 549 HYAGEVTYQANHFLDKNK 566 (1504)
Q Consensus 549 Hyag~V~Y~~~gfl~kN~ 566 (1504)
+|.|++.|+. ||=-|-
T Consensus 79 Gy~~digyq~--fLYp~e 94 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNE 94 (594)
T ss_pred CCCCCCcchh--hccCCh
Confidence 5889999974 665444
No 120
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.74 E-value=17 Score=46.03 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTV----SEAKNGELTKKLKDAEKRVDELQDS 1030 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~e----le~~~eel~~kl~elE~~~~~Lq~e 1030 (1504)
++..+-..|-+++.+|...+...+..... ++.++++++++++..|..+.++..+
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555444433322 3445556666666666666555443
No 121
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.73 E-value=20 Score=46.88 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.5
Q ss_pred HHHHHHHHhcc
Q 000443 613 LQSLMETLNAT 623 (1504)
Q Consensus 613 l~~Lm~~l~~t 623 (1504)
+-.||-.|.++
T Consensus 205 ~vkmlfkLHs~ 215 (980)
T KOG0980|consen 205 LVKMLFKLHSQ 215 (980)
T ss_pred HHHHHHHHHcC
Confidence 33444444433
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.70 E-value=5 Score=53.85 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 979 TAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEK--RVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 979 ~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~--~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
......++.++..++..+...+.++..++.........+.+.++ .-..+..+++.++..+.++..|++++
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333322222223323222 22333444444444555555555544
No 123
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.67 E-value=10 Score=47.80 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 000443 1014 TKKLKDAEKRVDELQDSVQRLAEKV------SNLESENQVLRQQ 1051 (1504)
Q Consensus 1014 ~~kl~elE~~~~~Lq~el~~Leeki------~~Le~En~~Lrqq 1051 (1504)
..++..++++......+++.+++++ .+++.|+..|++-
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 3344445555555555555555443 4566777777764
No 124
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=4.2 Score=50.61 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1006 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 1006 le~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
+..+++++.+.+..++.+++.+..++-+++.++.+
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444455555555555555555444444433
No 125
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=6 Score=48.54 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCCHH
Q 000443 1328 SLNNYLKIMRANYVPSF 1344 (1504)
Q Consensus 1328 ~L~~~~~~L~~~~V~~~ 1344 (1504)
.++.+.++|+.+.--..
T Consensus 620 qi~tlrtvlkankqtae 636 (772)
T KOG0999|consen 620 QITTLRTVLKANKQTAE 636 (772)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 34455556666554443
No 126
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.44 E-value=12 Score=43.18 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL--------KDAEKRVDELQDSVQRLAEKVSNLE 1042 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl--------~elE~~~~~Lq~el~~Leeki~~Le 1042 (1504)
-++++..|+.++--|++++++..++....++.+...+....+...++ --++.+..+|-.+...|++++-..+
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999998888888887877777775544443 2244455555555555555555554
Q ss_pred HH
Q 000443 1043 SE 1044 (1504)
Q Consensus 1043 ~E 1044 (1504)
.|
T Consensus 299 kE 300 (305)
T PF14915_consen 299 KE 300 (305)
T ss_pred HH
Confidence 44
No 127
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.37 E-value=30 Score=49.37 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 847 AYSYYKKLQRAIIVSQCGWRCRVARRELR--KLKMAARETGALQEAKNKLEKRVEELTWRLQIEK 909 (1504)
Q Consensus 847 ~r~~~~~~~~a~i~iQ~~~R~~~arkel~--~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~ 909 (1504)
....+..++..+..|+.-.....-.+.|. +++.....+..+++....|+.+-..++.-+...+
T Consensus 659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655544433333333 3444556677777777777777666666665443
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.34 E-value=6.5 Score=42.55 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN-------GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~-------eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~ 1046 (1504)
++.+|..+...+.+.+..+....+...+.....+... .+.+.+.+.+++.+..|+.++++|+.++.....+..
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~ 189 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYE 189 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHH
Confidence 3444444444444444444443333333333333333 333333344555555556666666655555555444
Q ss_pred HHH
Q 000443 1047 VLR 1049 (1504)
Q Consensus 1047 ~Lr 1049 (1504)
.+.
T Consensus 190 ~~~ 192 (205)
T KOG1003|consen 190 EAK 192 (205)
T ss_pred HHH
Confidence 433
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.29 E-value=14 Score=43.25 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 000443 1037 KVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1037 ki~~Le~En~~Lrqq 1051 (1504)
.+..|..|..+|+++
T Consensus 230 hI~~Lr~EV~RLR~q 244 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQ 244 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 130
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.28 E-value=15 Score=43.67 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000443 889 EAKNKLEKRVEELTWRLQ 906 (1504)
Q Consensus 889 ~~~~~LE~~l~el~~~l~ 906 (1504)
.....+++++..++..+.
T Consensus 117 ~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 117 LARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHH
Confidence 334445555555555444
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.27 E-value=7.9 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 922 EIAKLQEALHAMQLRVDDANSLV 944 (1504)
Q Consensus 922 E~~~L~~~le~l~~ele~~~~~l 944 (1504)
+.++++..+..++.+++++..++
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555554444
No 132
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.23 E-value=12 Score=42.00 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKG-----LLQSQTQTADEAKQAFTVSEAKNGELTK-------KLKDAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~-----ei~~l~~~l~ele~~l~ele~~~eel~~-------kl~elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
.+...|..||++|-. .+.+|+.++...+..-.++++..+++-. .++..+..+--|++++++.+.+|..
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 445566666665543 3445555554444444444444444333 3334444444455555555555555
Q ss_pred HHHHHHHHHH
Q 000443 1041 LESENQVLRQ 1050 (1504)
Q Consensus 1041 Le~En~~Lrq 1050 (1504)
|++.++.+.+
T Consensus 297 l~k~~~q~sq 306 (330)
T KOG2991|consen 297 LKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.17 E-value=0.34 Score=53.66 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 987 GLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 987 ~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
..+..++.++..++.++..++.+..+..+-++.+..++..|+-+...+++++.+|+.||..|-+.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444555556666666777777777777777776553
No 134
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.11 E-value=6.1 Score=47.82 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 000443 398 DALAKTIYSRLFDWIV 413 (1504)
Q Consensus 398 dalak~lY~~LF~wiV 413 (1504)
-.|++.+|+-|=+|+-
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3688888888877653
No 135
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.00 E-value=0.056 Score=39.25 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhhHHHHHH
Q 000443 736 GNAARKIQRQTRTYIARKEF 755 (1504)
Q Consensus 736 ~~aa~~IQ~~~R~~l~Rk~~ 755 (1504)
..+|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666665
No 136
>PRK01156 chromosome segregation protein; Provisional
Probab=94.00 E-value=5.9 Score=54.46 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
+...++..+..++..++.++.+++.+...|+
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.96 E-value=2.5 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLES 1043 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~ 1043 (1504)
.+.....+++.+.+++.+.+.+++.
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.91 E-value=18 Score=43.09 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.9
Q ss_pred ccchhHHHH
Q 000443 670 RRTFYEFVN 678 (1504)
Q Consensus 670 r~~~~~F~~ 678 (1504)
+++..+|+.
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 455555554
No 139
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.86 E-value=0.45 Score=56.56 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHhhcC-CCccccchhhHHHhhHHHHHHHHhhcC
Q 000443 1317 ALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEFVKAGLAELEQWCHDST 1395 (1504)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LEeW~~~~~ 1395 (1504)
.+...+.+++.+|..++... ...+|+.+..-+....|.+|+..+.+-|+.. -+..+-.--.++...+.++|.++.+..
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 34567889999999988654 5678999999999999999999999998753 345555566789999999999999871
Q ss_pred c--ccccchhHHhHHHHHHHHHHhhcCCCccCHHHHHhccCCCCCHHHHHHHHhcCc
Q 000443 1396 E--EFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYW 1450 (1504)
Q Consensus 1396 ~--~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~ 1450 (1504)
. ...+.....|..++|.++||....-..--.-.++..-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 1 124556789999999999999753222211135556678899998888887764
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=5 Score=51.57 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTK------KLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~------kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
.+++..+..|++++..+...+.+++.+-+..+...+...++... -....+.++.++..++.+....+.+++.+.
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~ 815 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL 815 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44555666666666655555555554444333333332221110 111223344444444666666677777777
Q ss_pred HHHHHH
Q 000443 1046 QVLRQQ 1051 (1504)
Q Consensus 1046 ~~Lrqq 1051 (1504)
..++++
T Consensus 816 ~~~keq 821 (970)
T KOG0946|consen 816 TQLKEQ 821 (970)
T ss_pred HHHHHH
Confidence 777766
No 141
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=22 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000443 831 RTKAAIIAQAQWRCHQAYSYY 851 (1504)
Q Consensus 831 ~~~aA~~IQ~~~R~~~~r~~~ 851 (1504)
.++++++.++..-.-..|++.
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~ 105 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHK 105 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655555554
No 142
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.81 E-value=31 Score=46.83 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=20.1
Q ss_pred CceEEEecccchhccccchhhhcc-----chhHHHHHHHHHh
Q 000443 543 TDFTILHYAGEVTYQANHFLDKNK-----DYVVAEHQALLTA 579 (1504)
Q Consensus 543 ~~F~i~Hyag~V~Y~~~gfl~kN~-----d~l~~~~~~ll~~ 579 (1504)
++-.+.-|.--+.-+.+|-+.-+. |+++|+++.-+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 344444444445555556555443 6777777655443
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.78 E-value=13 Score=41.10 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 983 ENLKGLLQSQTQTADEAKQAFTVSEA 1008 (1504)
Q Consensus 983 ~~Le~ei~~l~~~l~ele~~l~ele~ 1008 (1504)
++|..+++.++.++++.+..+..++.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 144
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.69 E-value=9.9 Score=50.29 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHH--HHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL--KDAEKRVDELQD---SVQRLA--EKVSNLES 1043 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl--~elE~~~~~Lq~---el~~Le--eki~~Le~ 1043 (1504)
....+.+|..+....+.++..+..+++..+++...++-+..-+.+++ +..|+....--. ..++++ .+|.+|+.
T Consensus 118 ~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEa 197 (769)
T PF05911_consen 118 KEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEA 197 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776777777666666666655554433333 122222111111 112222 28999999
Q ss_pred HHHHHHHH
Q 000443 1044 ENQVLRQQ 1051 (1504)
Q Consensus 1044 En~~Lrqq 1051 (1504)
|-++||--
T Consensus 198 EC~rLr~l 205 (769)
T PF05911_consen 198 ECQRLRAL 205 (769)
T ss_pred HHHHHHHH
Confidence 99999864
No 145
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.62 E-value=4.8 Score=49.16 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+..+.+++.+|..++.++.+++..+.-+..++..-+......-.+++.+.+++++.-.++.....+-++|++.|+.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344445555555555555555444443333333333333333344444455555555555555555666666664
No 146
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.59 E-value=15 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTA 996 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l 996 (1504)
.++.|+.|++.|+..+...++..
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443333
No 147
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.58 E-value=7.1 Score=48.42 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000443 1029 DSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1029 ~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+++..++.++.+++.+...++.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 148
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.57 E-value=15 Score=41.01 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
.++..+...+-.+..|++.+..-..||+.|
T Consensus 165 aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 149
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.56 E-value=7.2 Score=43.45 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEA 1008 (1504)
Q Consensus 976 ~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~ 1008 (1504)
..++.++..|+-+.+.++.....++.+..++..
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 150
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.52 E-value=0.049 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 151
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.50 E-value=6.9 Score=40.76 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 985 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAE 1021 (1504)
Q Consensus 985 Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE 1021 (1504)
+..+...+.+.+++.+.++.+++..+.++..-+..++
T Consensus 78 l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 78 LRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 152
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=15 Score=47.44 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=20.8
Q ss_pred chhccccchhhhccchhHHHHHHHHHhcc
Q 000443 553 EVTYQANHFLDKNKDYVVAEHQALLTAAK 581 (1504)
Q Consensus 553 ~V~Y~~~gfl~kN~d~l~~~~~~ll~~S~ 581 (1504)
.|-|--..|+-+|-|--..=+..++.+|.
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 48899999999998866555555555443
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.42 E-value=2.5 Score=51.50 Aligned_cols=9 Identities=11% Similarity=-0.108 Sum_probs=3.9
Q ss_pred HHHhcCCCH
Q 000443 1335 IMRANYVPS 1343 (1504)
Q Consensus 1335 ~L~~~~V~~ 1343 (1504)
.++..++|+
T Consensus 507 sc~R~~~de 515 (596)
T KOG4360|consen 507 SCRRMISDE 515 (596)
T ss_pred HHHhhcCch
Confidence 344444444
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.33 E-value=13 Score=49.04 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=23.2
Q ss_pred hhcCCCCCCccccccCCCccccCCCCcHHHHHHHH
Q 000443 269 AKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATR 303 (1504)
Q Consensus 269 ~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~ 303 (1504)
+.-|..-..-|....||.-..+...+|.+.+.-++
T Consensus 126 ESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLk 160 (1200)
T KOG0964|consen 126 ESAGFSRSNPYYIVPQGKINELANAKDSERLELLK 160 (1200)
T ss_pred HhcCcccCCCceEeechhhHHhhcCCcHHHHHHHH
Confidence 44455556667778888776777778877655433
No 155
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.29 E-value=6.3 Score=45.55 Aligned_cols=48 Identities=29% Similarity=0.397 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1003 FTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1003 l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.++..+.+-+..+++..++.-..+.++++.|++.+.+|+...+.++-
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 333333444444455566666667778888888888888887777664
No 156
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=12 Score=42.96 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 882 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV 944 (1504)
Q Consensus 882 ~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l 944 (1504)
.+...++.....|.+++.++..+++..++... +...+.++++.++..++..+.+.+..+
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~----~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEID----QSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555553333222 223445556666666666665555554
No 157
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.24 E-value=12 Score=47.90 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESE 1044 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~E 1044 (1504)
..+.++..+..+++..+..+..++..
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~t~E~r 415 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIKTAEER 415 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 158
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.24 E-value=20 Score=46.26 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 979 TAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 979 ~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
..|..+++-++++...+.+.++-++...++++.-|.-. +++...|+.+|++-...|+..+.+|-.
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it-------lrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT-------LRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444433333 333344445555555555555544443
No 159
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=34 Score=43.98 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=34.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 872 RELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQL 935 (1504)
Q Consensus 872 kel~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ 935 (1504)
+++..+.........+.....+.+..+.+++++....+.....+...+..+.+.+..+.++++.
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~ 204 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQE 204 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666667777777777776655444444444444444444444444433
No 160
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.11 E-value=7.5 Score=51.44 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.4
Q ss_pred hccCCeEEeecCCCCCCCCcc
Q 000443 621 NATAPHYIRCVKPNNVLKPSI 641 (1504)
Q Consensus 621 ~~t~~hfIrCIkPN~~~~p~~ 641 (1504)
..|..+||.|=+|.....|.-
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999987766543
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.09 E-value=1.1 Score=49.85 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
..+.+++.++++++.++.++..+.. ....+++.......+.+.+++++..+|+++++.++.++..|+.++..++.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555554433 233344444455555666677777777777777777777777777777764
No 162
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.01 E-value=17 Score=46.26 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 875 RKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDL---EEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAA 951 (1504)
Q Consensus 875 ~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~l---ee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~ 951 (1504)
.........+..........-.++.++...++.++-.-.++ -.....|+..+..+..++..++...++.+..-+...
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qe 529 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQE 529 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 952 RKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 1031 (1504)
Q Consensus 952 ~~~~~e~~~~~~e~~~l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el 1031 (1504)
.+...+.+..... ...-..+|+.-...++...++.+..+..-+......+-+.....+.+.-++.++..|..++
T Consensus 530 e~~~kqie~Lee~------~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqv 603 (786)
T PF05483_consen 530 EKMLKQIENLEET------NTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQV 603 (786)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000443 1032 QRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1032 ~~Leeki~~Le~En~~Lrqq 1051 (1504)
+.-...+.+|+.+|+.|+.+
T Consensus 604 Enk~K~ieeLqqeNk~LKKk 623 (786)
T PF05483_consen 604 ENKNKNIEELQQENKALKKK 623 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHH
No 163
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.79 E-value=48 Score=44.65 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=22.6
Q ss_pred HhccCccccccC-CeEEEeCCCCCCCCCCCHHHHHHhh
Q 000443 85 RYELNEIYTYTG-NILIAVNPFQRLPHLYDTHMMEQYK 121 (1504)
Q Consensus 85 R~~~~~iYT~~G-~iLiavNP~~~l~~ly~~~~~~~y~ 121 (1504)
||..-.+-| -| .|+=++-|--.+|+-|+.++...-+
T Consensus 193 rYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 193 RYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred ccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 555555533 23 3566777877788888887765543
No 164
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.65 E-value=18 Score=39.37 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~ 1047 (1504)
.|....+.+.+..+..+..+..+..++.+.+..-+-.++.+..++..++.|++.+.....+...+..++..
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555445555555566666666666666666655555555443
No 165
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.59 E-value=19 Score=46.12 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1022 KRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 1022 ~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
.+...++..+..|+..+...+.+...++
T Consensus 302 ~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 302 EEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.38 E-value=14 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 889 EAKNKLEKRVEELTWRLQIEKRL 911 (1504)
Q Consensus 889 ~~~~~LE~~l~el~~~l~~e~~~ 911 (1504)
+.+..|+-++.+++.+++-....
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q~ 322 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQQ 322 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhhh
Confidence 34566777778888777644443
No 167
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.37 E-value=22 Score=45.68 Aligned_cols=13 Identities=46% Similarity=0.642 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 000443 1024 VDELQDSVQRLAE 1036 (1504)
Q Consensus 1024 ~~~Lq~el~~Lee 1036 (1504)
...|.+.++.|++
T Consensus 244 r~~L~~tVq~L~e 256 (739)
T PF07111_consen 244 REELLETVQHLQE 256 (739)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 168
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.36 E-value=57 Score=46.89 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 357899999999999999999988754
No 169
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.36 E-value=0.083 Score=53.93 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999987754
No 170
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.27 E-value=16 Score=47.85 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 990 QSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1504)
Q Consensus 990 ~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~ 1047 (1504)
+.++-++.-+++++.-+..+.+++.+-..-.|+++.+.-+.++.-++.-..|.+|+..
T Consensus 124 E~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 124 EGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554555555444433334444444444444444444555555544
No 171
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.24 E-value=19 Score=49.70 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHhh
Q 000443 1345 LIRKVFTQIFSFINVQLFNSLL 1366 (1504)
Q Consensus 1345 l~~Q~f~Qlf~~Ina~lfN~Ll 1366 (1504)
|..++...++-++...++=+++
T Consensus 699 L~~~l~~S~~l~~~~~l~y~~~ 720 (1109)
T PRK10929 699 LLARLETSVAIWFLLLVVYHII 720 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 172
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.21 E-value=0.84 Score=54.32 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHH
Q 000443 1321 HWQSIVKSLNNYL 1333 (1504)
Q Consensus 1321 ~~~~il~~L~~~~ 1333 (1504)
.|..-+++|-.-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666555554433
No 173
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.13 E-value=22 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=14.1
Q ss_pred cccccchhhhhccHHHHHHHhh
Q 000443 1106 RPQKTLNEKQQENQDLLIKCIS 1127 (1504)
Q Consensus 1106 ~~~~~~~~~~~~~~~~li~~l~ 1127 (1504)
...+++.-+..+|.+++.+.+.
T Consensus 476 ~~~~~Fi~~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 476 NDLKAFICCDSEDYLLFVKKIK 497 (1072)
T ss_pred cccceeeeechHHHHHHHHHhh
Confidence 3455666666777777766664
No 174
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.09 E-value=14 Score=44.43 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+|+.....|+...+.+..+...+...+..+..+....++.....-..+.+.+++.+..++-+.+|..++..++.-
T Consensus 315 elRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 315 ELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333333332222222222333344446666666667777777777777654
No 175
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.05 E-value=0.098 Score=56.73 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=23.0
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
+...+...+|+|.|++|+|||...+.++.++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456778999999999999999999998888764
No 176
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.01 E-value=16 Score=45.30 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1021 EKRVDELQDSVQRLAEKVSNLESE 1044 (1504)
Q Consensus 1021 E~~~~~Lq~el~~Leeki~~Le~E 1044 (1504)
+.+...++.++..++.++..++..
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544444443
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.99 E-value=6.5 Score=44.50 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~ 1052 (1504)
...|+.|+..|-+..+.+++..+.+..++. --+..+.-+|.++......++.|+.++..++.|+++.++.+
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq-------~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQ-------VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555555555444444443333333222 22233345555555556666666666666666666665543
No 178
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.79 E-value=6.7 Score=49.71 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=14.2
Q ss_pred CCccccchhhHHHhhHHHHHHHHhhcCc
Q 000443 1369 RECCSFSNGEFVKAGLAELEQWCHDSTE 1396 (1504)
Q Consensus 1369 ~~~cs~s~G~qIr~nls~LEeW~~~~~~ 1396 (1504)
+|..-||+- ++-.|+.+.|+
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 466678885 44569998886
No 179
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.74 E-value=37 Score=41.02 Aligned_cols=14 Identities=43% Similarity=0.408 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 000443 1038 VSNLESENQVLRQQ 1051 (1504)
Q Consensus 1038 i~~Le~En~~Lrqq 1051 (1504)
..+|+.|.++|||.
T Consensus 405 e~eleqevkrLrq~ 418 (502)
T KOG0982|consen 405 EIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHhccc
Confidence 34455555555554
No 180
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=25 Score=42.75 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~ 1052 (1504)
...+.+.++...+..++..|.++.+|-+.|+++-
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ 419 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQE 419 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777788888888888888887763
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.51 E-value=2.2 Score=50.84 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
.++.+...++.+..++.+++.+++.+..++.++..+++.+.++++.+-.....+...++-...+++++...++.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443334444444444444444444444443
No 182
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.50 E-value=0.12 Score=52.38 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 183
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=66 Score=43.43 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHhHhHHHHH
Q 000443 785 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVAR 823 (1504)
Q Consensus 785 ~AAi~IQ~~~Rg~l~Rr~y~~~r~a~i~IQs~~Rg~~aR 823 (1504)
.++..-|..|.-|..-+.-.....-+...++.++....+
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 456666777777665555444444444444444444333
No 184
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.45 E-value=0.18 Score=58.55 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999877664
No 185
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.43 E-value=6.9 Score=51.74 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=10.6
Q ss_pred CCCceEEEecccc
Q 000443 541 SRTDFTILHYAGE 553 (1504)
Q Consensus 541 ~~~~F~i~Hyag~ 553 (1504)
.+..|.+.|-||-
T Consensus 377 ~~~ryy~~H~~Gv 389 (717)
T PF10168_consen 377 NPDRYYCYHNAGV 389 (717)
T ss_pred CCceEEEEecCcc
Confidence 4568999999996
No 186
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=18 Score=43.83 Aligned_cols=38 Identities=11% Similarity=0.354 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
..+++.+.-.-+.....++...-+...+|+++.+.+..
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666666666555543
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.25 E-value=0.23 Score=50.75 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.3
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998775
No 188
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.22 E-value=0.14 Score=55.67 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 189
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.15 E-value=0.16 Score=46.12 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.12 E-value=2.5 Score=46.82 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
....+..|+.++..|+..+.++...+.+..+.+..++.+...+.-++..++.++..++.+..+|=++..
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777766666666666666666666666666666665555433
No 191
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.12 E-value=18 Score=46.23 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKG 987 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ 987 (1504)
.++.+++.+...+..
T Consensus 254 ~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 254 GRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555444443
No 192
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=2.2 Score=53.30 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGE---LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~ee---l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
+.+++.|+.++..|+..+++++.++++++.++..+..+... ...+++..+.++..|+.++.+-...+..|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666655544331 233556677778888888888888888888888777
Q ss_pred HH
Q 000443 1049 RQ 1050 (1504)
Q Consensus 1049 rq 1050 (1504)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 75
No 193
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.08 E-value=7.1 Score=46.05 Aligned_cols=76 Identities=14% Similarity=0.342 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
++..++.+++.++.+++..++++.+++..+...+..........+.......++..++...+.++..++.....-+
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333332222222233333444444455555555554444444333
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.07 E-value=9.5 Score=43.25 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 990 QSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1504)
Q Consensus 990 ~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~ 1052 (1504)
..++.++.-+-+....+++..+++..++.--+.++.-++.++......+..|+.|+++++.+.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555666677777777788888888888888888888888888888653
No 195
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.06 E-value=72 Score=43.10 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1011 eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
.+..+.++++|.+..+-+..+++....+..|+++++.+.+
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344455566655555566666666666666666655544
No 196
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.72 E-value=48 Score=40.47 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1006 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 1006 le~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
+..+.+++-+++....-+...|...+.+.+-.++..-++.
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555555566666665555554444333333
No 197
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.71 E-value=0.3 Score=60.16 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=32.6
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 444455566667666789999999999999999988776643
No 198
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=77 Score=42.82 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=20.6
Q ss_pred eecCCCCCCCCccccch-hhh----HhhcccchhHHHHHHhhCCCcccchh
Q 000443 629 RCVKPNNVLKPSIFENF-NVI----QQLRCGGVLEAIRISCAGYPTRRTFY 674 (1504)
Q Consensus 629 rCIkPN~~~~p~~fd~~-~v~----~QLr~~gvle~iri~~~gyp~r~~~~ 674 (1504)
--|=||-..+.+..|.- .|+ .+||...+=+.|- |||.|-+-.
T Consensus 29 aIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy----g~~i~~~v~ 75 (1141)
T KOG0018|consen 29 AIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY----GKPIRKPVT 75 (1141)
T ss_pred eeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc----CCccCCchh
Confidence 33455555555555542 222 3455544444443 666665554
No 199
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.69 E-value=74 Score=42.57 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.++.++.++..++..++.+..++.+....+..++.....+..........+..+.-.++...+++.+|+.+...++.
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~ 542 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRA 542 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344555555566666666666666655555555555555444444444555666666666666666666666665443
No 200
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.61 E-value=10 Score=43.55 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1009 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 1009 ~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
+...|..++.+.+..+..+..+.+..+.....|+.+.
T Consensus 76 Ek~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 76 EKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 201
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.54 E-value=0.15 Score=59.51 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567888999999999999999999874
No 202
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.49 E-value=0.35 Score=49.97 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..+..|+++|++|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999988876
No 203
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.37 E-value=31 Score=40.93 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSE------------AKNGELTKKLKDAEKRVDELQDSVQRLAEKV 1038 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele------------~~~eel~~kl~elE~~~~~Lq~el~~Leeki 1038 (1504)
..+++..|..++..|++.+.++..++.-+.+++...+ .+.+++..+++.+..++.+|+.++..+-++.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk 156 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666665655555533 2445677777888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 000443 1039 SNLESENQVLRQQA 1052 (1504)
Q Consensus 1039 ~~Le~En~~Lrqq~ 1052 (1504)
.++..|....+.++
T Consensus 157 eEl~~ERD~yk~K~ 170 (319)
T PF09789_consen 157 EELVTERDAYKCKA 170 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777664
No 204
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.27 E-value=0.43 Score=54.26 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000443 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1504)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1504)
..++..-|.|+|.||||||+.++.+...+..-++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4477889999999999999999999998876554
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.23 E-value=0.18 Score=51.33 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|+|.|++|+|||..++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 206
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.18 E-value=64 Score=41.09 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=7.6
Q ss_pred hHHHHhhcccc
Q 000443 674 YEFVNRFGILA 684 (1504)
Q Consensus 674 ~~F~~ry~~l~ 684 (1504)
..|+.-|..|.
T Consensus 87 ~afl~vye~L~ 97 (629)
T KOG0963|consen 87 AAFLDVYEKLI 97 (629)
T ss_pred HHHHHHHHHHh
Confidence 45777787774
No 207
>PRK11281 hypothetical protein; Provisional
Probab=90.10 E-value=16 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000443 1031 VQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1031 l~~Leeki~~Le~En~~Lrqq 1051 (1504)
...|-+.+.+...+++.+.++
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555443
No 208
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.06 E-value=55 Score=44.22 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=6.4
Q ss_pred HHHHHHhhhcCC
Q 000443 696 VACQMILDKKGL 707 (1504)
Q Consensus 696 ~~~~~ll~~~~~ 707 (1504)
.....+++.+++
T Consensus 85 ~v~~~VV~~L~L 96 (754)
T TIGR01005 85 EILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHcCC
Confidence 345555555554
No 209
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.05 E-value=0.22 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3678999999999999999877763
No 210
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.05 E-value=0.29 Score=58.24 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+.+...+. .|||+|..|||||++.+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998753
No 211
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.99 E-value=92 Score=43.05 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHH
Q 000443 1323 QSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQL 1361 (1504)
Q Consensus 1323 ~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~l 1361 (1504)
...+..+..+-..+...++...+...+..++....|..+
T Consensus 739 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 739 EKALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555555555555554443
No 212
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.98 E-value=37 Score=44.10 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Lee 1036 (1504)
...++.++..++..+..+...+.+......+++...+++..++.+++.+...+.+.+..++.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433334444444444444444444444444444444443
No 213
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.95 E-value=0.25 Score=55.28 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++.--|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998877
No 214
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.88 E-value=0.24 Score=49.18 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~ 170 (1504)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999876
No 215
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.85 E-value=35 Score=38.04 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000443 1038 VSNLES 1043 (1504)
Q Consensus 1038 i~~Le~ 1043 (1504)
...++.
T Consensus 116 ~~kle~ 121 (201)
T PF13851_consen 116 FEKLEQ 121 (201)
T ss_pred HHHHHH
Confidence 333333
No 216
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.81 E-value=0.21 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 217
>PRK06696 uridine kinase; Validated
Probab=89.78 E-value=0.38 Score=54.49 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 134 AVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+|+..+.. ..+..--|.|+|.||||||+.|+.+.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555431 3556778999999999999999999998854
No 218
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.78 E-value=0.21 Score=55.52 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998875
No 219
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.76 E-value=29 Score=46.87 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQ 990 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~ 990 (1504)
..+.+|+.+...++.++.
T Consensus 288 ~~i~~L~~~l~~l~~~~~ 305 (754)
T TIGR01005 288 DLIQRLRERQAELRATIA 305 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 220
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.64 E-value=0.21 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..-|+|||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999998766
No 221
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.51 E-value=67 Score=40.33 Aligned_cols=169 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 866 RCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVI 945 (1504)
Q Consensus 866 R~~~arkel~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~ 945 (1504)
....+..+...+.........+......+. +..+...+.+ ....+...++.....++.++.+++..++
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 24 SYQHAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECE-----------LLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 946 KEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVD 1025 (1504)
Q Consensus 946 ~e~~~~~~~~~e~~~~~~e~~~l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~ 1025 (1504)
.++..... +...|+.-.++|..+.+.+-.++-+.+.+--. +...+.+..-+..++.++.
T Consensus 92 ~~~~~~~e--------------------k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~~l~~ll~Pl~e~l~ 150 (475)
T PRK10361 92 AAQQHADD--------------------KIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQSLNSLLSPLREQLD 150 (475)
T ss_pred HHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcChhhHhhhhCcc
Q 000443 1026 ELQDSVQRLAE----KVSNLESENQVLRQQALAISPTAKALAARPK 1067 (1504)
Q Consensus 1026 ~Lq~el~~Lee----ki~~Le~En~~Lrqq~~~~s~~~~~~~~~~~ 1067 (1504)
..++++++.+. ....|..+.+.|.+.....+..+.++...++
T Consensus 151 ~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 151 GFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 222
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.49 E-value=0.23 Score=55.01 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988876
No 223
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.42 E-value=34 Score=45.70 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1008 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 1008 ~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
++..++..+++.+.++-...+.++....+.+.+++.++
T Consensus 318 ~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 318 DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333444444444444444444444444444443
No 224
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.42 E-value=0.36 Score=56.09 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 347999999999999999999988753
No 225
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.22 E-value=0.23 Score=54.84 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 226
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.98 E-value=0.48 Score=56.89 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
...|+-....++-.|-..+. ........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVE--RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHH--HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45565554444433333222 233334445545799999999999999999988875
No 227
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.91 E-value=5.6 Score=35.31 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 999 AKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1504)
Q Consensus 999 le~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~ 1043 (1504)
+..++...+..+..++.++.+.+.+...|..+++.|+.++.++..
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444455556666666777777777777777777766665543
No 228
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=88.89 E-value=0.4 Score=50.95 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998764
No 229
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.72 E-value=47 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR-----------VDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~-----------~~~Lq~el~~Leeki~ 1039 (1504)
.+..+..|+.+...++..++.++..+.+++.++.+++.....+..+...++.. .......++++++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~ 176 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVD 176 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777776666555555443332 1223345556666666
Q ss_pred HHHHHHH
Q 000443 1040 NLESENQ 1046 (1504)
Q Consensus 1040 ~Le~En~ 1046 (1504)
.++.+.+
T Consensus 177 ~~ea~ae 183 (219)
T TIGR02977 177 ELEAQAE 183 (219)
T ss_pred HHHHHHH
Confidence 5555433
No 230
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=88.68 E-value=13 Score=47.30 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHhhcCCCccccchhhHHHhhHHHHHHHHhhcCcc
Q 000443 1318 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEE 1397 (1504)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LEeW~~~~~~~ 1397 (1504)
+..+....+..|...+..|+.. +++.....++.++..-|+-.+++.++++. -.|..-|.|+.+=+..| +.--+ .
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L---~~~~~-~ 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRAL---FSVFS-Q 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHH---HTTS---
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHH---HHHHH-h
Confidence 3445567899999999999999 99999999999999999999999999976 56666677777766444 44433 2
Q ss_pred cccchhHHhHHHHHHHHHHhhcCCCccCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000443 1398 FAGSAWDELRHIRQAVGFLVIHQKPKKTL--------------KEITNDL-CPVLSIQQLYRIST 1447 (1504)
Q Consensus 1398 ~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Qi~kil~ 1447 (1504)
+....-..+..|.+++.||-++..+.... .+++.+. -..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445579999999999999986544322 1121111 16677777777774
No 231
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.67 E-value=3.8 Score=36.45 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1016 KLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1016 kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
++++++.+...|+.+..++......|+.||+.|+++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666777777776654
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.66 E-value=0.6 Score=52.62 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999888753
No 233
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.60 E-value=90 Score=40.57 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1024 VDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1024 ~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
...+.+.+.++++....|..|..++++
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 234
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=88.58 E-value=0.34 Score=54.09 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.+..-|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567788999999999999998887654
No 235
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.57 E-value=0.27 Score=49.69 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999888877543
No 236
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.57 E-value=56 Score=38.21 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000443 976 NSLTAEVENLKGL 988 (1504)
Q Consensus 976 ~eL~~e~~~Le~e 988 (1504)
.+|.++...++..
T Consensus 161 ~el~aei~~lk~~ 173 (294)
T COG1340 161 KELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 237
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.54 E-value=14 Score=36.40 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR 1033 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~ 1033 (1504)
.+..|+.+++..+.....+.++.++++..+..++.+.....+++.+++.++.++...++.
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555555555555555555555544444
No 238
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.54 E-value=0.45 Score=56.79 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=35.4
Q ss_pred HHHhhcCCcCCCCcchHhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.++|+-....++-.|--. ..........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356766666655333311 22333333333 46777789999999999999998865
No 239
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.45 E-value=14 Score=42.49 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000443 1029 DSVQRLAE 1036 (1504)
Q Consensus 1029 ~el~~Lee 1036 (1504)
.+...++.
T Consensus 103 ~Ea~~lq~ 110 (246)
T PF00769_consen 103 EEAEELQE 110 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 240
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.43 E-value=17 Score=41.29 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
+++.+....++.+..+.+.+..|..+...++..
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443
No 241
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.35 E-value=4.9 Score=43.86 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 1011 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~e 1011 (1504)
++++++++..|.+++.+++.++++....+..++.++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333
No 242
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.27 E-value=0.82 Score=56.33 Aligned_cols=40 Identities=33% Similarity=0.416 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHH
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 3444445555666667899999999999999999888875
No 243
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.24 E-value=0.29 Score=52.45 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 244
>PTZ00121 MAEBL; Provisional
Probab=88.22 E-value=1.3e+02 Score=41.99 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.1
Q ss_pred CccccCCCCChhHHHHHHHHHhccCccccccCC
Q 000443 65 DDMTKLSYLHEPGVLQNLATRYELNEIYTYTGN 97 (1504)
Q Consensus 65 ~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~ 97 (1504)
=|||.=..+++..|+.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 378777777777777777777767778887663
No 245
>PRK08233 hypothetical protein; Provisional
Probab=88.22 E-value=0.27 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999988774
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.22 E-value=55 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1022 KRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1022 ~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
.+...++.++...++.+.+|+.++..|+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666654
No 247
>PTZ00301 uridine kinase; Provisional
Probab=88.14 E-value=0.33 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|-|+|-||||||+.|+.+.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999998877663
No 248
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.12 E-value=11 Score=44.49 Aligned_cols=79 Identities=11% Similarity=0.239 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
..++.+++..+..++..++.+.+++++.++.+.+++..++.....+.............+.+....+...+.....+..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQS 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666665555554433333444444444444444444444444333
No 249
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.10 E-value=0.28 Score=55.32 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.2
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000443 151 SILVSGESGAGKTETTKML 169 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~ 169 (1504)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987644
No 250
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.09 E-value=0.34 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.4
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998865
No 251
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.99 E-value=0.33 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|-|+|.||||||+.++.+...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999887753
No 252
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.89 E-value=0.36 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 253
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.82 E-value=1e+02 Score=40.23 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1020 AEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 1020 lE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
++.+...+.++++.++....++......|+
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 254
>PRK07261 topology modulation protein; Provisional
Probab=87.71 E-value=0.37 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
No 255
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.52 E-value=27 Score=45.23 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.-++++.|.+..-|.-.+..-+.+|..|++=.+.|+.
T Consensus 513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555565555566665555555554
No 256
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.49 E-value=19 Score=43.79 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=5.9
Q ss_pred HHHHHhhCCCcc
Q 000443 659 AIRISCAGYPTR 670 (1504)
Q Consensus 659 ~iri~~~gyp~r 670 (1504)
-|||-|-|-|+|
T Consensus 104 ~irivRd~~pnr 115 (493)
T KOG0804|consen 104 DIRIVRDGMPNR 115 (493)
T ss_pred eeEEeecCCCce
Confidence 344444555554
No 257
>PRK05541 adenylylsulfate kinase; Provisional
Probab=87.45 E-value=0.4 Score=52.04 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999998864
No 258
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.39 E-value=0.45 Score=51.59 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1504)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999886
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=87.32 E-value=0.42 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
+-|+|.|.+|||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999887753
No 260
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.28 E-value=0.37 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...|+|+|++|||||++.+.++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999888766
No 261
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.18 E-value=62 Score=37.97 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.8
Q ss_pred CCccchhHHHHHHHhccc
Q 000443 1134 GGKPVAACLIYKCLLHWR 1151 (1504)
Q Consensus 1134 ~~kp~pA~ilf~c~r~~~ 1151 (1504)
..+.+-|+-+|..+.-|.
T Consensus 307 ~qRllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 307 SQRLLFANSQFKTWTGYS 324 (401)
T ss_pred hhHHHHhHHHHHHHhccC
Confidence 446667888888777776
No 262
>PRK06762 hypothetical protein; Provisional
Probab=87.09 E-value=0.48 Score=50.76 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.06 E-value=0.41 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 264
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.00 E-value=0.38 Score=55.61 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=16.8
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000443 150 NSILVSGESGAGKTETTKML 169 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~ 169 (1504)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999876643
No 265
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=15 Score=37.14 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 1012 el~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
++..+.+.++.++..|+.+.+++++++.+|++++...-
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666666666666666654443
No 266
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.93 E-value=0.5 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 267
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=86.93 E-value=0.48 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 268
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.85 E-value=0.39 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998754
No 269
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.85 E-value=42 Score=34.80 Aligned_cols=63 Identities=22% Similarity=0.438 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
+...++.++..++.+.+.....+...+.. .+.+...+++++.+++.++.+|..+..-|-..+.
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555444433 3333334445555555555555555555544443
No 270
>PRK06547 hypothetical protein; Provisional
Probab=86.75 E-value=0.84 Score=49.53 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.7
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677889999999999999999887754
No 271
>PF05729 NACHT: NACHT domain
Probab=86.74 E-value=0.51 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
-++|+|+.|+|||+.++.++..++.-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 48999999999999999998888764
No 272
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=1.2e+02 Score=39.83 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 983 ENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 983 ~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
..+...++.......+.......++...++..+++++++..+.....+++.+..+...+++|+..|+..
T Consensus 548 ~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 548 TTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555555555555555666666666666666666666666666666666654
No 273
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=86.60 E-value=0.46 Score=56.26 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
...|+|+|..|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998864
No 274
>PF12846 AAA_10: AAA-like domain
Probab=86.55 E-value=0.51 Score=55.39 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999998888765
No 275
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.52 E-value=1.3e+02 Score=40.28 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
....+..|..++++.++.+..+..++..+... .+.......++.............+.++++|-..+.+++.|...+
T Consensus 512 ~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k 588 (775)
T PF10174_consen 512 KDSEIERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK 588 (775)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44556666666666666666665555442211 122222223333333333333334444444444444444444433
No 276
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=86.52 E-value=1.9 Score=53.35 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=34.1
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344445577777777899999999999999999999888754
No 277
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.51 E-value=6.9 Score=35.74 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
.|+.++..|+..++.+..+++..+..+..+..+......++..+-.++.+|..+++.++.++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666665555655555555555555555554433
No 278
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.28 E-value=0.45 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999988874
No 279
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.26 E-value=0.4 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+.|+|+|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999998885543
No 280
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.25 E-value=1.1e+02 Score=42.39 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.4
Q ss_pred chHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000443 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 166 (1504)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 166 (1504)
.||..+..-.-.-.-.|-|=||+..|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 455544333222234788999999999999999874
No 281
>PLN03025 replication factor C subunit; Provisional
Probab=86.23 E-value=0.83 Score=54.70 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=40.3
Q ss_pred HHHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567666666655544332 2355666666667899999999999999999988774
No 282
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.19 E-value=0.4 Score=49.92 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998865
No 283
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.09 E-value=1 Score=54.87 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.5
Q ss_pred HHHhhcCCcCCCCcchHhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.++|+-....++--|-..+. .++++... +-+++++++|+.|+|||+.++.+.+.+-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46677666666643333332 34444444 5689999999999999999999998875
No 284
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=76 Score=39.62 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000443 925 KLQEALHAMQL 935 (1504)
Q Consensus 925 ~L~~~le~l~~ 935 (1504)
.|.+.+..++.
T Consensus 342 dLkEkv~~lq~ 352 (654)
T KOG4809|consen 342 DLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 285
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=86.06 E-value=2.5 Score=52.68 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345566677777777899999999999999999888777654
No 286
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=85.97 E-value=0.46 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887754
No 287
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.94 E-value=1 Score=51.38 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555556679999999999999999988887764
No 288
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.88 E-value=0.69 Score=55.53 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.6
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.+.+.+ ..|+|+|+.|||||+..+.++.++.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334444 4699999999999999998888763
No 289
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.85 E-value=0.73 Score=56.12 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=28.8
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+.....+.+.+++|+|++|+|||.+++.+++.+..
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33344567889999999999999999999988754
No 290
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=85.80 E-value=0.41 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999988763
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.74 E-value=52 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1026 ELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1026 ~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
...+++...+.++..++.+....+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544443
No 292
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.56 E-value=0.43 Score=56.88 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
--++-+-||||||||.|+..||+-|.+-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3467799999999999999999999863
No 293
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.51 E-value=0.53 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 294
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.45 E-value=30 Score=43.46 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=44.6
Q ss_pred cchhhHHHhhHHHHHHHHhhcCc-ccccch--------hHHhHH---HHHHHHHHhhcCCCccCHHHHHhccCCCCCHHH
Q 000443 1374 FSNGEFVKAGLAELEQWCHDSTE-EFAGSA--------WDELRH---IRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQ 1441 (1504)
Q Consensus 1374 ~s~G~qIr~nls~LEeW~~~~~~-~~~~~~--------~~~L~~---i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Q 1441 (1504)
-+.-+-+|.-=+++-+|+++.++ +|.... .--++| .--.++||+|| +..++-.
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiDLAEytpNLrgaGVhGaLmiyEPrFtaetlA~lLniP--P~KTLLR------------- 770 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSIDLAEYTPNLRGAGVHGALMIYEPRFTAETLAELLNIP--PHKTLLR------------- 770 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhccHHHhCcccccCCCCcceEEecccccHHHHHHHHcCC--chHHHHH-------------
Confidence 34455667777899999999875 332210 001111 11234556665 2222210
Q ss_pred HHHHHhcCcCCCCCCCCCCHHHHHHHHHHhhccccc
Q 000443 1442 LYRISTMYWDDKYGTHSVSSEVSCKLLIISCAIFIS 1477 (1504)
Q Consensus 1442 i~kil~~Y~~d~~e~~~vs~~~i~~v~~~~~~~~~~ 1477 (1504)
.|+-++ |+ .=|-|++|..=++.|..|+++
T Consensus 771 -RHLtth-----Fn-~LiGpeai~~KRd~maap~Y~ 799 (861)
T KOG1899|consen 771 -RHLTTH-----FN-QLIGPEAIADKRDAMAAPNYP 799 (861)
T ss_pred -HHHHHH-----HH-HHhCcHhhhhhhhHhhCCCCC
Confidence 122233 34 467778888888888888776
No 295
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.44 E-value=0.83 Score=49.48 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
+...|+|.|-+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999653
No 296
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.40 E-value=74 Score=39.74 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 882 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLE 916 (1504)
Q Consensus 882 ~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~le 916 (1504)
.++...++.++.|..++..++..+........++.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlk 365 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 365 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666665543333333333
No 297
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.34 E-value=0.59 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988888764
No 298
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.28 E-value=53 Score=44.47 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=7.5
Q ss_pred cChHHHHHHHHHHHH
Q 000443 311 ISDQEQEAIFRVVAA 325 (1504)
Q Consensus 311 ~~~~~~~~i~~ilaa 325 (1504)
.++.+|.+||+-+++
T Consensus 104 Gpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 104 GPESQQEDLYDQAVS 118 (1041)
T ss_pred CcchhHHHHHHHHHH
Confidence 334446666654443
No 299
>PRK06315 type III secretion system ATPase; Provisional
Probab=85.27 E-value=1.3 Score=54.97 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 33445556789999999999999999999888766
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.23 E-value=58 Score=35.46 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTV 1005 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~e 1005 (1504)
..+.|+.++..+...+++-..++..++.....
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555555554443
No 301
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.11 E-value=0.69 Score=48.61 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
++|+|+||+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998876
No 302
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.06 E-value=63 Score=35.21 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTV 1005 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~e 1005 (1504)
.+..+...++.++.+....+..++..+..
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333333333
No 303
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.03 E-value=88 Score=36.89 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 000443 1039 SNLESENQVLRQ 1050 (1504)
Q Consensus 1039 ~~Le~En~~Lrq 1050 (1504)
..+..||.+|+.
T Consensus 264 k~ireEN~rLqr 275 (310)
T PF09755_consen 264 KEIREENRRLQR 275 (310)
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 304
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=14 Score=46.47 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=4.1
Q ss_pred HHHHHHhhhc
Q 000443 696 VACQMILDKK 705 (1504)
Q Consensus 696 ~~~~~ll~~~ 705 (1504)
+.++.|...+
T Consensus 302 ~~V~KiAasf 311 (652)
T COG2433 302 ETVKKIAASF 311 (652)
T ss_pred HHHHHHHHHc
Confidence 3444444433
No 305
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.90 E-value=6.2 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1027 LQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1027 Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
++.+.+++..+...|-+|+.+|+.+
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3333333333444444444455444
No 306
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.86 E-value=15 Score=38.87 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 1035 (1504)
Q Consensus 977 eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Le 1035 (1504)
.+..++..++..++.++.++++++.++...+.....+..++..++.......+++..+.
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333333333333333333333333333333333
No 307
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.83 E-value=0.48 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999998865
No 308
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.82 E-value=85 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTAD 997 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ 997 (1504)
...|+.|...++.+++.++.++.
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555444444444444433
No 309
>PLN02939 transferase, transferring glycosyl groups
Probab=84.82 E-value=76 Score=43.20 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=11.1
Q ss_pred cCCCcccceehHHHH
Q 000443 1175 HDNNDRLSYWLSNAS 1189 (1504)
Q Consensus 1175 ~~d~~~l~fWLSN~~ 1189 (1504)
..|+-..==|-+...
T Consensus 610 ~PDIIH~HDW~TaLV 624 (977)
T PLN02939 610 KPDIIHCHDWQTAFV 624 (977)
T ss_pred CCCEEEECCccHHHH
Confidence 467777778988765
No 310
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.81 E-value=0.58 Score=53.62 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
.+..++-+-||||+|||++.|.+++-+--.+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 3566788999999999999999998665433
No 311
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.75 E-value=0.63 Score=51.88 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|-|+|-||||||+-|+.+..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 55789999999999999988775
No 312
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.73 E-value=8.6 Score=42.36 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNLESENQVL 1048 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Lee----ki~~Le~En~~L 1048 (1504)
..+..|+.+++.++..+.+++.+++..+....+. .+...+..++++++.++..|+.+++.+.. .+.+++.+...+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443322222 34445677777888888888888776654 677777777777
Q ss_pred HHHH
Q 000443 1049 RQQA 1052 (1504)
Q Consensus 1049 rqq~ 1052 (1504)
+..+
T Consensus 148 ~~~a 151 (188)
T PF03962_consen 148 KEAA 151 (188)
T ss_pred HHHH
Confidence 7654
No 313
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=84.63 E-value=0.68 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|+|.|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 314
>PRK12704 phosphodiesterase; Provisional
Probab=84.62 E-value=1.3e+02 Score=38.59 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhh
Q 000443 1158 TSIFDRIIQTISGAI 1172 (1504)
Q Consensus 1158 ~~ll~~ii~~I~~~v 1172 (1504)
..+..++-..+...+
T Consensus 285 ee~~~~~~~~~~~~~ 299 (520)
T PRK12704 285 EEMVEKARKEVDEEI 299 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=84.60 E-value=1.2 Score=52.25 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+.+--|-|+|.||||||++++.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677889999999999999988776654
No 316
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.57 E-value=0.63 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999875
No 317
>PF13245 AAA_19: Part of AAA domain
Probab=84.51 E-value=1.1 Score=41.69 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888874
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.50 E-value=0.74 Score=53.66 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5689999999999999999999887654
No 319
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.46 E-value=98 Score=40.90 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQ---TADEAKQAFTVSEAKNGELTKKLKDA 1020 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~---~l~ele~~l~ele~~~eel~~kl~el 1020 (1504)
...+|+.||-.|++++..|+. +.+.++-++..++.+.+-+..+++++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655543 33444444544555444444444443
No 320
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.34 E-value=0.72 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999998754
No 321
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.29 E-value=1.1e+02 Score=39.91 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1023 RVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1023 ~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
.+..++.+++.+++++.++-.++...|++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444
No 322
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.25 E-value=1.1 Score=53.18 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=36.4
Q ss_pred HHhhcCCcCCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 118 EQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
+.|+-....++..|--+ -+..+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 44554444444445332 23445555555545699999999999999999988764
No 323
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.24 E-value=0.52 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999888763
No 324
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=84.21 E-value=80 Score=35.70 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 997 DEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1504)
Q Consensus 997 ~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Lee 1036 (1504)
.+++.+++--++..+++.....++-.-+.+|.++++.+.+
T Consensus 239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqs 278 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQS 278 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchh
Confidence 3444444444444444444444444444444444444433
No 325
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.20 E-value=0.66 Score=48.80 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 326
>PRK06217 hypothetical protein; Validated
Probab=84.14 E-value=0.64 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999988766
No 327
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.13 E-value=0.76 Score=48.49 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 328
>PRK12377 putative replication protein; Provisional
Probab=84.09 E-value=1.4 Score=50.81 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=32.8
Q ss_pred chHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
|+++.|..-...... ..++++++|.+|+|||..+..|.+++..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 456655544333332 35799999999999999999999998753
No 329
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=84.05 E-value=3.2 Score=35.92 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=41.6
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEecC-CeEEEEeCC-CcEEEEecccccCCC
Q 000443 6 NIIVGSHVWVEDPVLAWINGEVMWING-QEVHVNCTN-GKKVVTSVSKVFPED 56 (1504)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~-~~~~v~~~~-g~~~~~~~~~~~~~~ 56 (1504)
++.+|+.|=++..+..|..|+|+++.+ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899888887677899999999987 778888866 988888887776653
No 330
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.95 E-value=1.1 Score=55.35 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=28.1
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
......+.+++|+|.+|+|||.+++.+++.+..
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567789999999999999999999998754
No 331
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.83 E-value=1.3 Score=55.37 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=38.5
Q ss_pred HHhhcCCcCCC--CcchHhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46665555554 4555543 44444444 4788999999999999999999998865
No 332
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.81 E-value=98 Score=41.36 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 1037 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leek 1037 (1504)
+.++..++..|-..+.+-.+-+.++.+.....+.+...+..+++..|+++..|+-++.-+.++
T Consensus 101 l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ke 163 (769)
T PF05911_consen 101 LAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKE 163 (769)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444555555555666666666666555555543
No 333
>PRK03846 adenylylsulfate kinase; Provisional
Probab=83.78 E-value=1.3 Score=49.23 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.5
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
...+...|.|+|.||||||+.++.+...|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988654
No 334
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.74 E-value=0.34 Score=65.38 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
..+..++.++..|..++.++...+.+....+.++++.+..++.++.+++..+.++...+...+.....|+.++..++++
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555555555555555554443
No 335
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.65 E-value=0.34 Score=64.50 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=5.0
Q ss_pred HHHHHhcCc
Q 000443 1442 LYRISTMYW 1450 (1504)
Q Consensus 1442 i~kil~~Y~ 1450 (1504)
-++|-++|.
T Consensus 655 ~~rl~S~ya 663 (722)
T PF05557_consen 655 RVRLTSMYA 663 (722)
T ss_dssp EEEEEETT-
T ss_pred eEEEEeccc
Confidence 356666774
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=83.47 E-value=0.61 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1504)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999998886654
No 337
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.40 E-value=1.7 Score=57.11 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=31.3
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
+-.|+.--...+...+.+.+++|+|..|.|||.+++.+++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 344443333233334555667899999999999999999988643
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.25 E-value=78 Score=38.31 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccccc
Q 000443 889 EAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSL---VIKEREAARKAIKEAPPVIKET 965 (1504)
Q Consensus 889 ~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~---l~~e~~~~~~~~~e~~~~~~e~ 965 (1504)
.+++..+..+.++-..++..+ ..+..+++++++++.++++ .+-|+..+++.+.+.....+-
T Consensus 235 ~Qnk~akehv~km~kdle~Lq---------------~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~el- 298 (575)
T KOG4403|consen 235 RQNKKAKEHVNKMMKDLEGLQ---------------RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSEL- 298 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhh-
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 966 PVIIQDTEKINSLTAEVENLKGLLQSQTQTADE-----------------AKQAFTVSEAKNGELTKKLKDAEKRVDELQ 1028 (1504)
Q Consensus 966 ~~l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~e-----------------le~~l~ele~~~eel~~kl~elE~~~~~Lq 1028 (1504)
.+-.+++....|++.++.++...+++++. -|-+.+-.+.+.+..++++..+...++.++
T Consensus 299 ----reg~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 299 ----REGVENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred ----hcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred H---------------HHHHHHHHHHHHHHHHHHH
Q 000443 1029 D---------------SVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 1029 ~---------------el~~Leeki~~Le~En~~L 1048 (1504)
+ .+++...+|-+.++.+..+
T Consensus 375 KKrssv~gtl~vahgsslDdVD~kIleak~al~ev 409 (575)
T KOG4403|consen 375 KKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEV 409 (575)
T ss_pred HhhcchheeeeeccccchhhHHHHHHHHHHHHHHH
No 339
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.24 E-value=24 Score=38.19 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1019 elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
.+.+++...+.++.+|+.+..+|-.||..|++-
T Consensus 105 vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKEl 137 (195)
T PF10226_consen 105 VMRQEVAQYQQKLKELEDKQEELIRENLELKEL 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456677777777888888888888888888775
No 340
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.21 E-value=1.1 Score=56.35 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=39.7
Q ss_pred HHHhhcCCcCCC--CcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
.++|+-..+.++ .+|+-..-..|+ ...+-+|++|++|..|.|||++++++-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 356666665555 345544333332 235568999999999999999999998887654
No 341
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.20 E-value=2.1e+02 Score=39.69 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
....+.+.+.....+...++..++.+..++...+.+
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444443
No 342
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.18 E-value=1.3 Score=56.88 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.6
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.....++.|+|.||+|+|||..|+.+.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999987754
No 343
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.13 E-value=0.84 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999988854
No 344
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.05 E-value=45 Score=37.96 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESE 1044 (1504)
Q Consensus 975 i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~E 1044 (1504)
.+.|..|.....+++....+++..++..+..++.+..+.. ..+..+.++...|.+.+.++..|
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~-------~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ-------EKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555433 44444444444444545544444
No 345
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.05 E-value=21 Score=33.16 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1027 LQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1027 Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.++++.+......|+.+|+.|++
T Consensus 37 L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 37 LSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333333334444444433
No 346
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.03 E-value=1.6 Score=49.42 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999998887654
No 347
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.99 E-value=86 Score=35.14 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1016 KLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1504)
Q Consensus 1016 kl~elE~~~~~Lq~el~~Leeki~~L 1041 (1504)
++..++..+.+...++++|-.-+++|
T Consensus 176 ~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 176 KVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333
No 348
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.87 E-value=1.4 Score=55.91 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=38.9
Q ss_pred HHhhcCCcCCCC--cchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 118 EQYKGAAFGELS--PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
++|+-..+.++. +|+...-..| +...+-.+++|++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456655555553 4444322222 3345668999999999999999999999988653
No 349
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.81 E-value=37 Score=39.37 Aligned_cols=66 Identities=11% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~ 1039 (1504)
.+..+..+++.++..+..+..+...++.++..-+.+.+..++++..++.-.=-..+|-+.+|++++
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555444444444444444443
No 350
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.74 E-value=13 Score=41.36 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1504)
Q Consensus 978 L~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Lee 1036 (1504)
++++++.++.+...+++++++.+.++..++.....+.++.++...+.++|.++-+.|++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33333333443333444444444433334444443333333444444444433333333
No 351
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.71 E-value=0.95 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 352
>PRK13764 ATPase; Provisional
Probab=82.71 E-value=1 Score=57.85 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 353
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.50 E-value=1.3e+02 Score=38.10 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000443 1035 AEKVSNLESENQVLR 1049 (1504)
Q Consensus 1035 eeki~~Le~En~~Lr 1049 (1504)
..++.+.+.+...++
T Consensus 290 ~~~l~~~~~~l~~~~ 304 (457)
T TIGR01000 290 KQEITDLNQKLLELE 304 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334434333333
No 354
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.47 E-value=23 Score=37.52 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 978 LTAEVENLKGLLQSQTQTADEAKQAF 1003 (1504)
Q Consensus 978 L~~e~~~Le~ei~~l~~~l~ele~~l 1003 (1504)
|...+..+..+++.+...++.++.++
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 355
>PRK10698 phage shock protein PspA; Provisional
Probab=82.46 E-value=95 Score=35.26 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR--VD---------ELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~--~~---------~Lq~el~~Leeki~~ 1040 (1504)
...+..|+.+....+..++.+...+..++.++.+++.....+..+....+.+ +. .--...+++|+++.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777777776666655444322 11 122355667777777
Q ss_pred HHHHHHH
Q 000443 1041 LESENQV 1047 (1504)
Q Consensus 1041 Le~En~~ 1047 (1504)
++.+-+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 7666544
No 356
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=82.43 E-value=0.98 Score=55.99 Aligned_cols=64 Identities=31% Similarity=0.535 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC-----CCCcHHHHHHhhchHHhhhcccc---ccCCCCCCccccE
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-----EGRTVEQQVLESNPVLEAFGNAK---TVRNNNSSRFGKF 218 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~-----~~~~ie~~vl~snpilEaFGNAk---T~rN~NSSRfGk~ 218 (1504)
..+=+|+|+||||+||-..|+.|=+ .|.+.+. +...|-..+++| |-||..| | -.+.+|-|+|
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFT--GA~~~r~G~f 231 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFT--GAITRRIGRF 231 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeecccCCHHHHHH----HhhcccccCcC--CcccccCcce
Confidence 4577899999999999987765533 3433221 112233333332 4599888 5 4568899998
Q ss_pred EE
Q 000443 219 VE 220 (1504)
Q Consensus 219 ~~ 220 (1504)
-.
T Consensus 232 E~ 233 (464)
T COG2204 232 EQ 233 (464)
T ss_pred eE
Confidence 54
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=82.40 E-value=1 Score=47.20 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998755
No 358
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.34 E-value=1.8 Score=55.56 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=41.6
Q ss_pred HHHHhhcCCcCCCCcchHhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 116 MMEQYKGAAFGELSPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
..++|+-..+.++--|--.+ ..+..+. ..+-++++|++|+.|.|||+.|+.+-+.|-+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666654333333 3444444 44668999999999999999999999998654
No 359
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=82.32 E-value=0.82 Score=48.04 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999887753
No 360
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.31 E-value=91 Score=39.10 Aligned_cols=10 Identities=40% Similarity=0.272 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000443 834 AAIIAQAQWR 843 (1504)
Q Consensus 834 aA~~IQ~~~R 843 (1504)
|+........
T Consensus 146 A~~i~n~~~~ 155 (444)
T TIGR03017 146 AATVANAFAQ 155 (444)
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 361
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.21 E-value=0.79 Score=51.76 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1504)
-+++-|.||||||++.|+|-+-+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 467899999999999999877554
No 362
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.17 E-value=32 Score=43.97 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 000443 1326 VKSLNNYLKIMRANYV 1341 (1504)
Q Consensus 1326 l~~L~~~~~~L~~~~V 1341 (1504)
++..+++|.+--.|||
T Consensus 716 LkmvdsFHr~Sl~yGI 731 (916)
T KOG0249|consen 716 LKMVDSFHRTSLQYGI 731 (916)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444445544444443
No 363
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=82.14 E-value=1 Score=48.92 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988765
No 364
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=82.12 E-value=0.97 Score=46.10 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999988876
No 365
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=82.08 E-value=0.9 Score=48.71 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877775
No 366
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.04 E-value=1.1 Score=57.78 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=38.1
Q ss_pred HHhhcCCcCCCCcchHhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 118 EQYKGAAFGELSPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
++|+-..+.++--|=..+ +...++. ..+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 16 ~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456655555443222222 2233433 34568999999999999999999999988653
No 367
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.99 E-value=88 Score=34.72 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000443 925 KLQEALHAMQ 934 (1504)
Q Consensus 925 ~L~~~le~l~ 934 (1504)
.|+.++.+..
T Consensus 35 ~Lr~ql~e~~ 44 (202)
T PF06818_consen 35 SLRAQLRELR 44 (202)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 368
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.97 E-value=14 Score=39.84 Aligned_cols=64 Identities=19% Similarity=0.411 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRLA 1035 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~--eel~~kl~elE~~~~~Lq~el~~Le 1035 (1504)
.+++.++..++..|+.++..+..++..++.++..+.... +++...+.+++.++..+++.++.++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777666665533 3344444444444444444444444
No 369
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.90 E-value=0.74 Score=57.80 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
..+..=|-||||||||+++..+|.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45678899999999999999999998754
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=81.88 E-value=1.5 Score=54.50 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=33.0
Q ss_pred cchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 130 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.|+... ....+.+...+...+|++.|++|.|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344332 3556677777788899999999999999999887654
No 371
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.83 E-value=1.2 Score=56.37 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334789999999999999998888774
No 372
>PRK04182 cytidylate kinase; Provisional
Probab=81.77 E-value=0.89 Score=49.11 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999887654
No 373
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.75 E-value=29 Score=34.74 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1014 TKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1504)
Q Consensus 1014 ~~kl~elE~~~~~Lq~el~~Leeki~~Le~En 1045 (1504)
..+++.++..+..+.+..+.++.++.+++++.
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=81.73 E-value=1.4 Score=54.51 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=25.1
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEecCCeEEEEe
Q 000443 6 NIIVGSHVWVEDPVLAWINGEVMWINGQEVHVNC 39 (1504)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~ 39 (1504)
....|+.|+|.... ..+.|+|+..+++.+.+..
T Consensus 46 ~~~iGe~~~i~~~~-~~~~~eVv~~~~~~~~l~~ 78 (450)
T PRK06002 46 FVRLGDFVAIRADG-GTHLGEVVRVDPDGVTVKP 78 (450)
T ss_pred CCCCCCEEEEECCC-CcEEEEEEEEeCCeEEEEE
Confidence 56789999995333 3488999999988877664
No 375
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.71 E-value=1.1e+02 Score=35.73 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 995 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 995 ~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
.+++++.+..-++.+.+..+++-+.++.+...|.+-+.++|...+.
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3344444444444444444444445555555555555555554443
No 376
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=81.69 E-value=1 Score=49.18 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000443 152 ILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1504)
|+|.|.||||||+-||.+.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999874
No 377
>PF13166 AAA_13: AAA domain
Probab=81.69 E-value=1.9e+02 Score=38.79 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000443 1014 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1053 (1504)
Q Consensus 1014 ~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq~~ 1053 (1504)
..++..++.++..+...+..++..+..++.+...|+.+..
T Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666666666677777777766766543
No 378
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.62 E-value=11 Score=43.27 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1009 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1009 ~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.+.+..+..++|+++..+..++..|+.++..|+.+|-+|-.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666666666655544
No 379
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.60 E-value=0.46 Score=64.15 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 879 MAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAK 919 (1504)
Q Consensus 879 ~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k 919 (1504)
.+......+++....|+.++.+++..|+.++..+...+..+
T Consensus 29 ~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r 69 (859)
T PF01576_consen 29 DEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQR 69 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777788888888888887776555444333
No 380
>PRK07667 uridine kinase; Provisional
Probab=81.56 E-value=1.1 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.0
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999998864
No 381
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.51 E-value=1.3e+02 Score=36.31 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTV 1005 (1504)
Q Consensus 974 ~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~e 1005 (1504)
....+...++.|+.+++.+++.+...+++.++
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667788888888888888777665544
No 382
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=81.49 E-value=1.1 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999988764
No 383
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.38 E-value=0.97 Score=49.00 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.3
Q ss_pred CCeEEEecCCCCCCchhhHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
+---+.+.|.||||||+..|+|+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 344578999999999999998876
No 384
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.37 E-value=1.4 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEecCCCCCCchhhHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~ 170 (1504)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999776554
No 385
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.35 E-value=1.1 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 386
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.20 E-value=1.2e+02 Score=35.53 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1013 l~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
++.-....+.++......-+.+++++..|++||--|+||
T Consensus 198 ~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 198 IEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555556666778889999999999999987
No 387
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.14 E-value=1.5e+02 Score=37.06 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1021 EKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1504)
Q Consensus 1021 E~~~~~Lq~el~~Leeki~~Le~En~~L 1048 (1504)
+.+...++..+.+|-..+.++-+..+..
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555555444443
No 388
>PRK04040 adenylate kinase; Provisional
Probab=80.96 E-value=1.1 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.-|+|+|.+|+|||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998887
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=80.96 E-value=1.1 Score=50.44 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+..+.=|.||||+|||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46678889999999999999988876644
No 390
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.95 E-value=25 Score=34.52 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 983 ENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 983 ~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~ 1046 (1504)
.+|+.+..-|++.+-+.+....++...+..-+..+..++++++.|.=..+.|..++..|+.|..
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333334444444444444444444444444444
No 391
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=80.92 E-value=1.4 Score=55.93 Aligned_cols=58 Identities=31% Similarity=0.468 Sum_probs=43.0
Q ss_pred HHHHhhcCCcCCCCcchHhHHH--HHHHHHHhcCC-CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 116 MMEQYKGAAFGELSPHVFAVGD--AAYRAMINEGK-SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~--~Ay~~m~~~~~-~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+++|+-....++.-|-=.|.+ .....|..... .+-.|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 5677887778888888766654 33455554443 5667789999999999999988866
No 392
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=80.92 E-value=2 Score=53.10 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=41.3
Q ss_pred CCCHHHHHHhhcCCcCCCCcchHhHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 111 LYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 111 ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+.++..+..|-+...-...+=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577777777655433334444455555555433321 24789999999999999999886544
No 393
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=80.91 E-value=1.1 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987643
No 394
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=80.88 E-value=2.9 Score=52.03 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000443 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
|...-.+...+..-++.|.+.|.|.||+|||+..+.++.+
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344455556666678999999999999999988877664
No 395
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=80.86 E-value=1.2 Score=49.41 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=29.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHHHHHHhhch-----HHhhhccc
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 204 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~vl~snp-----ilEaFGNA 204 (1504)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999988866442 211 1112345555665433 66777764
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=80.67 E-value=1.5 Score=47.43 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999998887654
No 397
>PHA00729 NTP-binding motif containing protein
Probab=80.66 E-value=2.1 Score=48.33 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
+.-.+|+|+|.+|+|||+.|..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999988764
No 398
>PRK15453 phosphoribulokinase; Provisional
Probab=80.64 E-value=1.2 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.=-|.|+|-||||||+.++.+-+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999988776544
No 399
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.54 E-value=1.1 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1504)
.|++.|++|.|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999888766
No 400
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.39 E-value=62 Score=39.27 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1009 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1009 ~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+..+.+.++.+.+.++..+++++..++.+..+...+...|++
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444443
No 401
>PRK06893 DNA replication initiation factor; Validated
Probab=80.36 E-value=2.3 Score=48.30 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 137 DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
..+.+.+ ....+-++++.|+||+|||..+..+.+.+..-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333343 34566789999999999999999998887653
No 402
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.33 E-value=1.5 Score=44.25 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.8
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 403
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.33 E-value=2.2 Score=55.62 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.3
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
..+.....+++|+|.||+|+|||+.++.+.+....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999876543
No 404
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.31 E-value=1.7e+02 Score=36.91 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 985 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 985 Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
...++.+|..++...+.+..-...+.+.+.+++...+++...+.+++.....++..|++|+...+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666667777777777777777777777777777777777777766554
No 405
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=80.27 E-value=2.2 Score=45.83 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000443 134 AVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1504)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1504)
+|...+... ....++-.|-++|-||||||+.+-.+=+.|-..|-
T Consensus 9 ~v~~~~r~~-~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 9 SVTKQEREA-LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred ccCHHHHHH-HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 444443333 33456779999999999999999999998887663
No 406
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.26 E-value=1.2 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=19.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
-.-|+|+|+||+||||+|=-+++
T Consensus 145 GvGVLItG~SG~GKSElALeLi~ 167 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIK 167 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHH
Confidence 46799999999999999866655
No 407
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=80.18 E-value=1 Score=53.80 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999988877654
No 408
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.18 E-value=1.9e+02 Score=40.60 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=18.3
Q ss_pred CeEEEecCCCCCCchhhHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~ 170 (1504)
.--++|+|++|||||+....|.
T Consensus 30 ~~l~~I~G~tGaGKStildai~ 51 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999877665
No 409
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.15 E-value=1.1 Score=52.74 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred CeEEEecCCCCCCchhhHHHH
Q 000443 149 SNSILVSGESGAGKTETTKML 169 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~ 169 (1504)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 467999999999999999987
No 410
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=80.08 E-value=2.8 Score=52.01 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 34456667677889999999999999999988777643
No 411
>PRK06761 hypothetical protein; Provisional
Probab=80.07 E-value=1.1 Score=52.40 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998864
No 412
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.01 E-value=1.9e+02 Score=37.23 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1000 KQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1000 e~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
+.+...+.+..++-..+..+.+++...++.+++.+++++..|+.+..+++.
T Consensus 710 raE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~ 760 (961)
T KOG4673|consen 710 RAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKR 760 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555556666677777777777777777777777666554
No 413
>PRK06936 type III secretion system ATPase; Provisional
Probab=79.99 E-value=1.8 Score=53.49 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 145 ~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 145 PLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 344444555566666789999999999999999888777654
No 414
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.84 E-value=2.3 Score=52.60 Aligned_cols=56 Identities=14% Similarity=0.346 Sum_probs=39.7
Q ss_pred HHhhcCCcCCCCcchHhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 118 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
++|+-..+.++--|-.++ ..++++... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345555555554444333 246666665 46789999999999999999999988854
No 415
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.80 E-value=35 Score=41.46 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=3.9
Q ss_pred CCccccch
Q 000443 638 KPSIFENF 645 (1504)
Q Consensus 638 ~p~~fd~~ 645 (1504)
.|..||.+
T Consensus 62 ~p~e~DDP 69 (359)
T PF10498_consen 62 QPQEYDDP 69 (359)
T ss_pred CCcccCCH
Confidence 35555544
No 416
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=79.62 E-value=3 Score=43.76 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668999999999999999999998864
No 417
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.61 E-value=24 Score=32.77 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000443 985 LKGLLQSQTQTADEAKQAFTV 1005 (1504)
Q Consensus 985 Le~ei~~l~~~l~ele~~l~e 1005 (1504)
|+.++++++.+...+..+...
T Consensus 23 LqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 418
>PRK09099 type III secretion system ATPase; Provisional
Probab=79.57 E-value=2.5 Score=52.43 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 137 DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
-.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 151 i~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 151 VRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred ceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345556556789999999999999999887776543
No 419
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.52 E-value=41 Score=34.33 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1504)
Q Consensus 1012 el~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrq 1050 (1504)
++.++++..+.++..++...+.+++++.+++.....+-+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555544443
No 420
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.48 E-value=70 Score=39.28 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000443 1021 EKRVDELQDSVQRLAEKVSNLE 1042 (1504)
Q Consensus 1021 E~~~~~Lq~el~~Leeki~~Le 1042 (1504)
..+.+++++-++....++.+||
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3455667777777788888887
No 421
>PRK04195 replication factor C large subunit; Provisional
Probab=79.38 E-value=1.6 Score=55.50 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.....++|+|++|.|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 337899999999999999999887765
No 422
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.28 E-value=2.4 Score=54.14 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.1
Q ss_pred HHHhhcCCcCCCC--cchHhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.++|+-..+.++- +|+... ...+... +-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567666666554 455443 3333343 56788999999999999999999998864
No 423
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.24 E-value=1.4 Score=48.19 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+..-.|+|+|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 424
>PRK08727 hypothetical protein; Validated
Probab=79.23 E-value=2.6 Score=48.10 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.5
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
....+.|+|+|+||+|||..+..+...+..-
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999888876653
No 425
>PRK14527 adenylate kinase; Provisional
Probab=79.22 E-value=1.5 Score=48.18 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999887664
No 426
>PRK11281 hypothetical protein; Provisional
Probab=79.19 E-value=2.9e+02 Score=38.84 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1016 KLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1504)
Q Consensus 1016 kl~elE~~~~~Lq~el~~Leeki~~Le~En~~Lrqq 1051 (1504)
++.+.-.+++.+.++..+.+..++.+......+++|
T Consensus 293 ~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eq 328 (1113)
T PRK11281 293 RLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQ 328 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 427
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.00 E-value=2.6 Score=47.62 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCC--CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 136 GDAAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 136 A~~Ay~~m~~~~~--~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
|-.|-..+..... ...++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3344445554432 3679999999999999888888877654
No 428
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.99 E-value=24 Score=40.84 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDEL 1027 (1504)
Q Consensus 978 L~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~L 1027 (1504)
+..+...+..++..++.+++.++..+..+++....+++++.+++.++..+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333
No 429
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.96 E-value=1.3 Score=49.85 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
...+.+.|.|+||||||+..|.++..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887653
No 430
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.94 E-value=1.7 Score=51.08 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=33.3
Q ss_pred hHhHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 132 VFAVGDAAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~~--------~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
++....++...+... .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999999764
No 431
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=78.87 E-value=2.2 Score=50.22 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 432
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=78.81 E-value=4.8 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=33.1
Q ss_pred CcEEEEeCCC-CCeEeEEEEEec-CCeEEEEeCC-CcEEEEecccc
Q 000443 10 GSHVWVEDPV-LAWINGEVMWIN-GQEVHVNCTN-GKKVVTSVSKV 52 (1504)
Q Consensus 10 g~~vwv~~~~-~~w~~~~v~~~~-~~~~~v~~~~-g~~~~~~~~~~ 52 (1504)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6677777654 889999999987 6678888766 88777766544
No 433
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.78 E-value=1e+02 Score=37.49 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000443 892 NKLEKRVEELTWRLQ 906 (1504)
Q Consensus 892 ~~LE~~l~el~~~l~ 906 (1504)
.+.++++.++..++.
T Consensus 9 s~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 9 SENDQRLIDLNTELA 23 (459)
T ss_pred hhhhhHHHHHHHHHH
Confidence 334445555544444
No 434
>PRK08356 hypothetical protein; Provisional
Probab=78.78 E-value=1.2 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEecCCCCCCchhhHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~ 171 (1504)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998854
No 435
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.77 E-value=27 Score=32.00 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 985 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 985 Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~En~ 1046 (1504)
|+.++..|...++.+..++...+..+..+..+-.....++...-.++.+|..++..|..|++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444444444443333444444444444444444444444433
No 436
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=78.76 E-value=1.6 Score=46.43 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=78.75 E-value=1.1 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..+|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888765
No 438
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=78.67 E-value=5.4 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.652 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1017 LKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1504)
Q Consensus 1017 l~elE~~~~~Lq~el~~Leeki~~Le~ 1043 (1504)
+.++|..+..+++.+.+++..+..++.
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k 172 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEK 172 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 333333333333333333333333333
No 439
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.66 E-value=3.7 Score=50.80 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000443 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
.|...+..-++.|.+.|.|.||+|||+..+.+++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444444578899999999999999988776654
No 440
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=78.65 E-value=1.6 Score=50.57 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
...-.+++.|++|+|||..++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999999886654
No 441
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.65 E-value=1.3e+02 Score=34.33 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=19.4
Q ss_pred cchhHHHHHH----hhCCCcccchhHHHHhhc
Q 000443 654 GGVLEAIRIS----CAGYPTRRTFYEFVNRFG 681 (1504)
Q Consensus 654 ~gvle~iri~----~~gyp~r~~~~~F~~ry~ 681 (1504)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 4555555554 346999999999987655
No 442
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=78.64 E-value=1.4 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 443
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=78.63 E-value=1.3 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
..-+|.|+|.||+||++..|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3458999999999999988876543
No 444
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.58 E-value=1.4 Score=49.26 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999998877543
No 445
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.57 E-value=1.5 Score=50.75 Aligned_cols=78 Identities=28% Similarity=0.397 Sum_probs=50.4
Q ss_pred ccCccccccCCeEEEeCCCCCCCCCCCHHHHHHh--hcCCc--CCCCcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 000443 87 ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQY--KGAAF--GELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGK 162 (1504)
Q Consensus 87 ~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y--~~~~~--~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGK 162 (1504)
+-|-=|++.|..=+-||-|+... -|+--. +.- +-..+ -.+||-+..+++ ..+--|+|+|..||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~vl-R~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALVL-RLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEEE-eccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 45667999998888999987653 111100 000 00011 135665555443 3566799999999999
Q ss_pred hhhHHHHHHHHHH
Q 000443 163 TETTKMLMRYLAY 175 (1504)
Q Consensus 163 Te~~k~~~~yla~ 175 (1504)
|+|.--++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 446
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=78.54 E-value=1.4 Score=52.96 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999887654
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=78.50 E-value=1.4 Score=49.35 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888776543
No 448
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.39 E-value=0.86 Score=58.57 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+.+.|.|.|+||||||+..|.++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999987654
No 449
>PRK14528 adenylate kinase; Provisional
Probab=78.29 E-value=1.6 Score=47.90 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000443 150 NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987765
No 450
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.23 E-value=3.5 Score=49.47 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=32.3
Q ss_pred chHhHHHHHHHHHHh-----cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 131 HVFAVGDAAYRAMIN-----EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 131 HifaiA~~Ay~~m~~-----~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
.+...+..|+..+.. .....++++.|.+|+|||..+..|.+.+..-
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 444555555543321 1234889999999999999999999888653
No 451
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.18 E-value=1.5 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
...+.+.|.|+||||||+..|.++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998887764
No 452
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=78.17 E-value=1.5 Score=49.24 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999887654
No 453
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.16 E-value=0.69 Score=61.67 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 000443 1037 KVSNLESENQVLRQ 1050 (1504)
Q Consensus 1037 ki~~Le~En~~Lrq 1050 (1504)
++.+++-++..|+.
T Consensus 306 el~~lq~e~~~Le~ 319 (722)
T PF05557_consen 306 ELAELQLENEKLED 319 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 454
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.14 E-value=1.5e+02 Score=35.49 Aligned_cols=170 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 877 LKMAARETGALQEAKNKLEKRVEELTWRLQIE---------------KRLRTDLEEAKSQEIAKLQEALHAMQLRVDDAN 941 (1504)
Q Consensus 877 lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e---------------~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~ 941 (1504)
.....++++.|......+..+.+..+..+... ++-.+++++...+.+++|+.+-+.--..+.+.+
T Consensus 293 ~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEK 372 (593)
T KOG4807|consen 293 HEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEK 372 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 942 SLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKG----LLQSQTQTADEAKQAFTVSEAKNGELTKKL 1017 (1504)
Q Consensus 942 ~~l~~e~~~~~~~~~e~~~~~~e~~~l~~~~~~i~eL~~e~~~Le~----ei~~l~~~l~ele~~l~ele~~~eel~~kl 1017 (1504)
..+-.|.........+.-+..-. .++.++.++-..++...+.|+. +++.+..+++-+-++...-.-++..+.+.+
T Consensus 373 drLLAEETAATiSAIEAMKnAhr-EEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqal 451 (593)
T KOG4807|consen 373 DRLLAEETAATISAIEAMKNAHR-EEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQAL 451 (593)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1018 KDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1504)
Q Consensus 1018 ~elE~~~~~Lq~el~~Leeki~~Le~En~~ 1047 (1504)
++-++.+.+.+.+.++|....++|...+..
T Consensus 452 EaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 452 EAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
No 455
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.10 E-value=1.5e+02 Score=38.66 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL 1017 (1504)
Q Consensus 973 ~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl 1017 (1504)
.....+..++..+...+..+...+.+-+...+.+....+++.+.+
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l 388 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQL 388 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 344455555555555555555444443333333333333333333
No 456
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.05 E-value=2.2 Score=55.02 Aligned_cols=55 Identities=25% Similarity=0.432 Sum_probs=40.0
Q ss_pred HHHhhcCCcCCC--CcchHhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.++|+-..+.++ .+|+-.+ ++++...+ -.+++|++|+.|.|||++++.+.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766665554 4666433 34444444 4899999999999999999999998864
No 457
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=78.01 E-value=2.6 Score=51.04 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=32.1
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 136 GDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 136 A~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44556655554 45899999999999999999999998865
No 458
>PRK14974 cell division protein FtsY; Provisional
Probab=78.01 E-value=3 Score=50.18 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887644
No 459
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=78.00 E-value=1.4 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=20.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
..+.+.|.|++|||||+..+.+...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 5678999999999999987766543
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=77.99 E-value=2 Score=51.33 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999988654
No 461
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=77.99 E-value=1.4 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~ 171 (1504)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988755
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.97 E-value=1.6 Score=48.80 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..+.++..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999988877544
No 463
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=77.88 E-value=1.6 Score=49.40 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999988765
No 464
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=77.84 E-value=1.5 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887654
No 465
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=77.84 E-value=1.9 Score=52.46 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=31.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCCCcHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie 188 (1504)
..|+|-+-|+|||||++..+++.+++-.-+|+-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999765554333444444
No 466
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=77.82 E-value=1.1 Score=58.84 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
...|.|-|.|+||||||+.+|+++.+..--.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3578999999999999999999988765433
No 467
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.79 E-value=1.6 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888876543
No 468
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.62 E-value=1.7 Score=47.21 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=21.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998887777766443
No 469
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=77.57 E-value=1.5 Score=52.89 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999999887654
No 470
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.56 E-value=94 Score=39.38 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000443 888 QEAKNKLEKRVEELTWRLQ 906 (1504)
Q Consensus 888 ~~~~~~LE~~l~el~~~l~ 906 (1504)
.++...||--+++-+.+|.
T Consensus 138 gEKIrDLE~cie~kr~kLn 156 (861)
T KOG1899|consen 138 GEKIRDLETCIEEKRNKLN 156 (861)
T ss_pred hhhHHHHHHHHHHHHhhhc
Confidence 3334444444444444443
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=77.54 E-value=1.6 Score=49.82 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999988764
No 472
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=77.49 E-value=3.6 Score=48.09 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=33.6
Q ss_pred hHhHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 132 VFAVGDAAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 132 ifaiA~~Ay~~m~~---------~~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45555555555432 23468999999999999999988888887654
No 473
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=77.44 E-value=2.4 Score=50.62 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=33.5
Q ss_pred CCCCcch----HhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 126 GELSPHV----FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 126 ~~~~PHi----faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.+++|-- ..+.+.-+..-..-.....|++.|-+|||||+.++.+-..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4566643 33333333333445678899999999999999999987654
No 474
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=77.43 E-value=1.8 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
..-|||+|.||+|||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999999988653
No 475
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.42 E-value=2.1 Score=54.32 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=37.1
Q ss_pred HHhhcCCcCCC--CcchHhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
++|+-..+.++ ..|+.+.-..+. ...+-.++++++|++|+|||++++.+.+.+-..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34554444444 344433333332 234567889999999999999999999988643
No 476
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.42 E-value=21 Score=44.26 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD-AEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1504)
Q Consensus 972 ~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~e-lE~~~~~Lq~el~~Leeki~~Le~En~~Lr 1049 (1504)
.+.+..|-.+.++++.+++.+..+++.++++...++++......++.. ++.+..+++++.+.|+++...++..+..|.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666665555544443333321 223333334444444444444444444443
No 477
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=77.39 E-value=2.1 Score=40.51 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
|+++|-.|+|||+++..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 478
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.38 E-value=1.2e+02 Score=39.61 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1017 LKDAEKRVDELQDSVQRLAEKVSNL 1041 (1504)
Q Consensus 1017 l~elE~~~~~Lq~el~~Leeki~~L 1041 (1504)
+++++.++..+++++..+-.+++..
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=77.36 E-value=1.6 Score=48.93 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357889999999999999988887644
No 480
>PRK10646 ADP-binding protein; Provisional
Probab=77.34 E-value=3.8 Score=43.50 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000443 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999999877
No 481
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=77.29 E-value=1.6 Score=55.02 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
+-.+.=|-||||||||+.+|.++..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567779999999999999999887644
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=77.29 E-value=1.6 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000443 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1504)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1504)
..+.+.|.|++|||||+..|.++..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5688999999999999988887753
No 483
>PRK08116 hypothetical protein; Validated
Probab=77.21 E-value=3.4 Score=48.17 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred chHhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000443 131 HVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1504)
Q Consensus 131 HifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1504)
+.|+.|..--...... ..+..+++.|++|+|||..+..|.++|..-
T Consensus 95 ~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 95 KAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555444433222 345679999999999999999999998764
No 484
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.21 E-value=3.1 Score=52.44 Aligned_cols=53 Identities=25% Similarity=0.487 Sum_probs=37.0
Q ss_pred HHhhcCCcCCC--CcchHhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000443 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLA 174 (1504)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla 174 (1504)
++|+-..+.++ ++|+ ....+.+...+ -++++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45665555554 3555 33445555444 457899999999999999999988764
No 485
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.21 E-value=2.3e+02 Score=36.50 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred hhHHHHHHhHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 000443 808 SSAMILQTGLRAMVARNEFRLRKRT--KAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETG 885 (1504)
Q Consensus 808 ~a~i~IQs~~Rg~~aR~~~~~~r~~--~aA~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arkel~~lr~~a~e~~ 885 (1504)
.++..++-+....+....+...... .|......+.+....-....++.+.....+..--.....|..+.+....+.+.
T Consensus 177 ~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~ 256 (511)
T PF09787_consen 177 NAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIE 256 (511)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q ss_pred HHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000443 886 ALQE-AKNKLEKR------VEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEA 958 (1504)
Q Consensus 886 ~l~~-~~~~LE~~------l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~~~~~e~ 958 (1504)
.|+. ....--.. +.++..+.+ ...++...++.+++.+..++.+.+.++..+.+..++...++
T Consensus 257 ~LK~~~~~~~~~~~~~~~el~~l~~E~~-----------~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~ 325 (511)
T PF09787_consen 257 SLKEGCLEEGFDSSTNSIELEELKQERD-----------HLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQEL 325 (511)
T ss_pred HHHhcccccccccccchhcchhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred Cccccccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 000443 959 PPVIKETPVI-IQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELT--KKLKDAEKRVDELQDSVQRLA 1035 (1504)
Q Consensus 959 ~~~~~e~~~l-~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~--~kl~elE~~~~~Lq~el~~Le 1035 (1504)
+......... .+-.-...++..-.+.+......+..++.+.+.+++.+........ ..-.++|..+..+.+.+-.-+
T Consensus 326 ~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ 405 (511)
T PF09787_consen 326 SQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQ 405 (511)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000443 1036 EKVSNLESENQVLR 1049 (1504)
Q Consensus 1036 eki~~Le~En~~Lr 1049 (1504)
..+..|..|+..|.
T Consensus 406 ~~lE~l~~ek~al~ 419 (511)
T PF09787_consen 406 TQLESLGSEKNALR 419 (511)
T ss_pred HHHHHHHhhhhhcc
No 486
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.20 E-value=2.9 Score=53.54 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHhhcCCcCCCCcchHhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 118 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
++|+-..+.++--|-..+. +..++... +-.+++|++|++|.|||+.++.+.+.|
T Consensus 8 ~k~rP~~f~divGq~~v~~--~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVR--ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhCCCcHHHhcCcHHHHH--HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
No 487
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=77.13 E-value=75 Score=39.12 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHH
Q 000443 805 TVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIV------SQCGWRCRVARRELRKLK 878 (1504)
Q Consensus 805 ~~r~a~i~IQs~~Rg~~aR~~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~~~~a~i~------iQ~~~R~~~arkel~~lr 878 (1504)
..+..-.+-+.++--+.+=.++.+..++.||..+|..|.-|+..+-+++-....+. +|+...-+..|-+.+++.
T Consensus 337 sRKLeLt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~ 416 (489)
T KOG3684|consen 337 ARKLELTKAEKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLS 416 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 879 MAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDA 940 (1504)
Q Consensus 879 ~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~ 940 (1504)
+.+..+..+.+....+...+.++..+-+ +....+..|+..++.++..+..+
T Consensus 417 e~~nsl~d~aK~~~~myd~~~~l~~~q~-----------~le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 417 EQANSLVDLAKTQNDMYDLLQELHSRQE-----------ELEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhC
No 488
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=77.13 E-value=1.2e+02 Score=33.10 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000443 874 LRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSL---VIKEREA 950 (1504)
Q Consensus 874 l~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~---l~~e~~~ 950 (1504)
+..|+.....+..|.-.+...+..+..+..+....+................+-.+..++..++..++.+ +++..+-
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 951 ARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDS 1030 (1504)
Q Consensus 951 ~~~~~~e~~~~~~e~~~l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~e 1030 (1504)
.++.+...+..-.. -.+.-..++.+...-...+..-.++++.+|.+...+.....-.+.++..+|.++.+-+-+
T Consensus 83 MRkmv~~ae~er~~------~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq 156 (178)
T PF14073_consen 83 MRKMVESAEKERNA------VLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000443 1031 VQRLAEKVSNLESENQ 1046 (1504)
Q Consensus 1031 l~~Leeki~~Le~En~ 1046 (1504)
-.-+.++-..|+.+.+
T Consensus 157 RKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 157 RKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHhhHH
No 489
>PRK13768 GTPase; Provisional
Probab=77.08 E-value=1.9 Score=49.89 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=0.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
.|+|+|.+|+|||+.+..+..+++..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.05 E-value=2.8 Score=55.46 Aligned_cols=58 Identities=17% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHhhcCCcCCCCcchHhHHH-HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000443 116 MMEQYKGAAFGELSPHVFAVGD-AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
....|+-..+.++--+--.+.+ ...+.+...++..++++.|++|.|||+.++.+-+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
No 491
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=77.03 E-value=1.9 Score=46.11 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHH
Q 000443 140 YRAMINEGKSNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~ 170 (1504)
...+...-+++++++.|.||+|||.....++
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.02 E-value=1.8 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1504)
...+.+.|.|++|||||+..|.++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 493
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.00 E-value=20 Score=37.92 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1504)
Q Consensus 971 ~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl~elE~~~~~Lq~el~~Leeki~~Le~ 1043 (1504)
..++...|..++..|..+++++.+.....+.++.++.+.+. +.+++.++..|.+++...++++.++.+
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK12704 phosphodiesterase; Provisional
Probab=76.99 E-value=2.3e+02 Score=36.47 Aligned_cols=146 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000443 885 GALQEAKNKLEKRVEELTWRL-QIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIK 963 (1504)
Q Consensus 885 ~~l~~~~~~LE~~l~el~~~l-~~e~~~~~~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~~~~~~e~~~~~~ 963 (1504)
..++.+....+.-+.+...+. +..++.+.+.+++..+...+++..+.+.+.++...+.++.+..+.+.+
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~---------- 100 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR---------- 100 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 000443 964 ETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL---KDAEKRVDELQDSVQRLAEKVSN 1040 (1504)
Q Consensus 964 e~~~l~~~~~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~eel~~kl---~elE~~~~~Lq~el~~Leeki~~ 1040 (1504)
....++..+.++...++.++..++++++.++++.++..+......++ ..-+.+-.-+..--++++.....
T Consensus 101 -------r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~ 173 (520)
T PRK12704 101 -------KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAV 173 (520)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 000443 1041 LESENQV 1047 (1504)
Q Consensus 1041 Le~En~~ 1047 (1504)
+-.+.+.
T Consensus 174 ~~~~~~~ 180 (520)
T PRK12704 174 LIKEIEE 180 (520)
T ss_pred HHHHHHH
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=76.98 E-value=2.2 Score=51.62 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000443 134 AVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1504)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1504)
.+..++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
No 496
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=76.98 E-value=3 Score=45.72 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC-eEEEecCCCCCCchhhHHHHHHHH
Q 000443 138 AAYRAMINEGKS-NSILVSGESGAGKTETTKMLMRYL 173 (1504)
Q Consensus 138 ~Ay~~m~~~~~~-QsIiisGESGaGKTe~~k~~~~yl 173 (1504)
..++++...++- +++++.|++|.|||+.++.+.+.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
No 497
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.96 E-value=1.7 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1504)
...+.+.|.|+||||||+..|.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 498
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=76.88 E-value=1.8 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000443 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1504)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1504)
|++.|++|+|||..|+.+-+++...|
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
No 499
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.85 E-value=1.6e+02 Score=38.63 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 875 RKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRT---DLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAA 951 (1504)
Q Consensus 875 ~~lr~~a~e~~~l~~~~~~LE~~l~el~~~l~~e~~~~~---~lee~k~~E~~~L~~~le~l~~ele~~~~~l~~e~~~~ 951 (1504)
+.+..++....++.......++++..+...+........ +-+..+.++...+...++.|..+.++...++.....+.
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCCcc----ccccchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 000443 952 RKAIKEAPPV----IKETPVIIQDT-EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG--------------- 1011 (1504)
Q Consensus 952 ~~~~~e~~~~----~~e~~~l~~~~-~~i~eL~~e~~~Le~ei~~l~~~l~ele~~l~ele~~~e--------------- 1011 (1504)
++...++... ........+.- .++++++.++..|+++..+=.+++.+...++..+.+.+.
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~ 213 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLV 213 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhh
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000443 1012 ----------------ELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1504)
Q Consensus 1012 ----------------el~~kl~elE~~~~~Lq~el~~Leeki~~Le~ 1043 (1504)
.+..-+..++.++.+..+.++++..++.+|..
T Consensus 214 ~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 214 DHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred hccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=76.79 E-value=1.6 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000443 147 GKSNSILVSGESGAGKTETTKMLM 170 (1504)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1504)
.+.+.+-|-||||||||+.+|.++
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIM 54 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Done!