Your job contains 1 sequence.
>000444
MLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISA
LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQA
TYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKG
LMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNL
GVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVA
SPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVS
QLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTK
ELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE
LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNI
YAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQA
SAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGIL
HNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRD
ALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYEN
ASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEY
NVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQ
QLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFP
EQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLS
SEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFI
LKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAF
SFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGT
LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLL
PEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR
YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEG
RYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGL
LITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000444
(1498 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0276029 - symbol:DDB_G0276029 "putative CC... 1230 1.2e-246 4
MGI|MGI:2442402 - symbol:Cnot1 "CCR4-NOT transcription co... 1358 1.2e-233 4
UNIPROTKB|G3V7M0 - symbol:Cnot1 "RCG39079" species:10116 ... 1358 1.2e-233 4
UNIPROTKB|A5YKK6 - symbol:CNOT1 "CCR4-NOT transcription c... 1358 1.9e-233 4
UNIPROTKB|F1MHU9 - symbol:CNOT1 "Uncharacterized protein"... 1358 2.4e-233 4
UNIPROTKB|F1RFU3 - symbol:CNOT1 "Uncharacterized protein"... 1358 3.1e-233 4
ZFIN|ZDB-GENE-040915-1 - symbol:cnot1 "CCR4-NOT transcrip... 1366 3.1e-228 3
UNIPROTKB|E1BXD4 - symbol:LOC100858397 "Uncharacterized p... 1362 3.1e-225 3
FB|FBgn0085436 - symbol:Not1 "Not1" species:7227 "Drosoph... 1358 2.0e-220 2
WB|WBGene00002845 - symbol:let-711 species:6239 "Caenorha... 1052 2.7e-169 2
GENEDB_PFALCIPARUM|PF11_0049 - symbol:PF11_0049 "hypothet... 968 1.1e-167 6
UNIPROTKB|Q8IIW4 - symbol:PF11_0049 "NOT family protein, ... 968 1.1e-167 6
ASPGD|ASPL0000078074 - symbol:AN4965 species:162425 "Emer... 765 1.8e-164 4
RGD|1308009 - symbol:Cnot1 "CCR4-NOT transcription comple... 1275 5.7e-130 1
SGD|S000000689 - symbol:CDC39 "Component of the CCR4-NOT ... 635 8.7e-124 4
CGD|CAL0001252 - symbol:CDC39 species:5476 "Candida albic... 476 2.1e-114 4
UNIPROTKB|Q59R01 - symbol:CDC39 "Potential mRNA deadenyla... 476 2.1e-114 4
POMBASE|SPAC20G8.06 - symbol:not1 "CCR4-Not complex subun... 654 6.5e-105 3
DICTYBASE|DDB_G0287399 - symbol:DDB_G0287399 species:4468... 125 0.00052 1
>DICTYBASE|DDB_G0276029 [details] [associations]
symbol:DDB_G0276029 "putative CCR4-NOT complex
subunit 1" species:44689 "Dictyostelium discoideum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] dictyBase:DDB_G0276029 GO:GO:0005634
GO:GO:0005737 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0000122 GO:GO:0051726 GO:GO:0000288 GO:GO:0030015
GO:GO:0000175 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 OMA:ANIAGTR
RefSeq:XP_643319.1 ProteinModelPortal:Q75JL4
EnsemblProtists:DDB0220028 GeneID:8620365 KEGG:ddi:DDB_G0276029
InParanoid:Q75JL4 ProtClustDB:CLSZ2445457 Uniprot:Q75JL4
Length = 2526
Score = 1230 (438.0 bits), Expect = 1.2e-246, Sum P(4) = 1.2e-246
Identities = 244/417 (58%), Positives = 305/417 (73%)
Query: 1064 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1123
+K+ +L+K+L+V +K + KD E + FN RPY R+F N L+D++S DP+ + + IL
Sbjct: 2115 TKLNMLTKVLSVLIKILTKDYENNPSRFNQRPYLRIFENLLVDLTSPDPILEHVSNHILF 2174
Query: 1124 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPF 1183
F NA LQP K P F FAWL+L+SH+SFMPKLLI QK W LLV +FLEPF
Sbjct: 2175 CFVNALATLQPQKYPGFCFAWLDLLSHKSFMPKLLIRQ-QKQW--FHALLVQHFKFLEPF 2231
Query: 1184 LRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPR 1243
LR +L PVR LYKGTL+VLL+LLHDFPEFLC+YHF+ CDVIP +CIQ+RN+ILSAFPR
Sbjct: 2232 LRGGDLSEPVRVLYKGTLKVLLLLLHDFPEFLCEYHFSLCDVIPNTCIQLRNLILSAFPR 2291
Query: 1244 NMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSEL 1303
NMRLPDP TPNLKID+LP+I PP+I S A+L K ++ ++D+Y K P SFL +L
Sbjct: 2292 NMRLPDPFTPNLKIDMLPDINQPPKISSNFTASL--KGLKIEIDNYFKNRGP-YSFLLDL 2348
Query: 1304 KQK--LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL 1361
K K LL E +AGT+YNVPLINSLVLY+G AI Q+Q ++ A +
Sbjct: 2349 KNKHLLLTDKEEILAAGTKYNVPLINSLVLYIGTLAIPQIQRKSGVAPTPSQ-------- 2400
Query: 1362 VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 1421
SA +DIF L DLD+EGRY+F NA ANQLRYPNNHTHY S V+L+L++E+ Q+II+EQ
Sbjct: 2401 -SAPMDIFHRLALDLDSEGRYIFFNAIANQLRYPNNHTHYLSCVILFLFSESGQDIIKEQ 2459
Query: 1422 ITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSC 1478
ITRVL ERLI N+PHPWGLLITFIELIKN RYNFW+ F + APEI +LF+SVA+SC
Sbjct: 2460 ITRVLLERLISNKPHPWGLLITFIELIKNLRYNFWSHGFTKVAPEIAQLFDSVAKSC 2516
Score = 587 (211.7 bits), Expect = 1.2e-246, Sum P(4) = 1.2e-246
Identities = 121/270 (44%), Positives = 173/270 (64%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 79
F + + I TL+ A++ P + +DKI FIINNIS N++ KAK+ +ILK +YY
Sbjct: 1224 FSTTIPIGTLLNASKEMIQPDDI----TKDKIYFIINNISQNNLDVKAKDLKDILKPEYY 1279
Query: 80 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSE 139
+FAQY+V+KR SIE NFH LYL F+D++ ++ ++ +++N LL SE I+
Sbjct: 1280 DYFAQYLVVKRVSIEANFHALYLAFIDRLCIPTISERVLFHSHQNVHTLLKSEKIRVDHS 1339
Query: 140 ERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSS 199
ERSLLKNLG WLG T+ RN+ L + I PK L+I A E GL+IA++PF +K+LE CQ S
Sbjct: 1340 ERSLLKNLGGWLGLNTLARNKPLLQKVISPKDLLIYAAENGLLIAIVPFVAKLLEHCQQS 1399
Query: 200 LAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRK-- 257
++PPNPW MAIL L+ EIY + K N+KF++E+L NL VD+ + PT++L DR+
Sbjct: 1400 KVFRPPNPWVMAILRLMVEIYQLKESKNNIKFEVELLCNNLSVDINTVKPTTILADRRQQ 1459
Query: 258 REIEGNPDFSNKDVGASQPQLVPEVKPAIV 287
REIE + KD S L+ + +V
Sbjct: 1460 REIEQQEENMRKDNKQSSIDLLSNLPRYLV 1489
Score = 463 (168.0 bits), Expect = 1.2e-246, Sum P(4) = 1.2e-246
Identities = 105/234 (44%), Positives = 146/234 (62%)
Query: 366 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 425
+ N+ +++ + A F++ VP+A D+A++EI++ +V+RSV+IA T+KELV K
Sbjct: 1481 LSNLPRYLVYTPSIGAYAQSPIFKKAVPLAFDKAVREIIAPVVERSVAIAVITSKELVSK 1540
Query: 426 DYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQ---GLTIASELL 482
D+A E+DE ++ A+HLMV +LAGSLA VTCK+PLR SI + LR LQ GL L
Sbjct: 1541 DFATEADEQKMKRASHLMVQNLAGSLALVTCKDPLRVSIIAYLRTLLQNNNGLPPCEIPL 1600
Query: 483 EQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSS-FFDPNIY 541
E A+ LV N+NLD C+++E AAT+KAI +ID +A + R KHRE +GS FFD
Sbjct: 1601 EHAISLVCNENLDFACSIVETAATEKAIISIDEVLASSYNDRLKHREQMGSQPFFDMGYL 1660
Query: 542 AQGSMG-VPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSS 594
+PE+LRPKPG + Q RVYEDF LP S A +LT+S
Sbjct: 1661 TTTIYNTLPESLRPKPGGIQPDQFRVYEDFTNLPHHINISNVGGAGETDNLTAS 1714
Score = 283 (104.7 bits), Expect = 1.7e-134, Sum P(4) = 1.7e-134
Identities = 70/211 (33%), Positives = 113/211 (53%)
Query: 950 ESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRR 1009
E + DP G E V L +W + ++ +Y+ Q+ Q +K + +FFR
Sbjct: 2017 EDMIVDPPGLREAVIALLQDWL-LFSSTNTDQKILIQYLGQVLQISFMKNELYFIKFFRL 2075
Query: 1010 LTEVSVA-HCLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGSSKIFL 1068
E ++ + + E+ +P +L ID + + ++ ++K +K+ +
Sbjct: 2076 GLEYALERYAANVEIQSP------------QYLEIDSWCRFVVMMVK----HADPTKLNM 2119
Query: 1069 LSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANA 1128
L+K+L+V +K + KD E + FN RPY R+F N L+D++S DP+ + + IL F NA
Sbjct: 2120 LTKVLSVLIKILTKDYENNPSRFNQRPYLRIFENLLVDLTSPDPILEHVSNHILFCFVNA 2179
Query: 1129 FHVLQPLKVPAFSFAWLELVSHRSFMPKLLI 1159
LQP K P F FAWL+L+SH+SFMPKLLI
Sbjct: 2180 LATLQPQKYPGFCFAWLDLLSHKSFMPKLLI 2210
Score = 203 (76.5 bits), Expect = 1.2e-246, Sum P(4) = 1.2e-246
Identities = 67/301 (22%), Positives = 139/301 (46%)
Query: 618 AGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGA---ADGGILHNSESESVNAAFTP 674
AG T S +D+ SG +ST G +S LV IL + + +
Sbjct: 1705 AGETDNLTASPTNDIVSGAIKST--GVMSQQLVQQQMQQQVSQQILQQQQQQQIQMQLLQ 1762
Query: 675 AATELYAADSTEPV-KEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLD 733
+ A + + ++ Q + + + +L D L+K+ ++ ++D
Sbjct: 1763 QQAQQAALQAAQQQHQQQQQQQQQVQQQQQQVQQQQQQQQQNLPNSDLLEKFGLLLNEVD 1822
Query: 734 ALI-----GNDAREAEVQGVISE-VPEIILRCISRDEAALAVAQKVFKGLYENASNNLHF 787
++ E E+ IS+ + ++ S+ E AQ++ L E + +
Sbjct: 1823 KVVIRVLAQTQNIELELLYTISQQILTLVRMSQSQSELLAGFAQRLCNRLCEQEKKPI-Y 1881
Query: 788 SAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKL 847
+ +L +RD + V+ +TS++++S ++K NR + GLI +L+N+ EY++ ++K+
Sbjct: 1882 EIYFELLEVLRDWDQKVITTITSFLLFSTPDKKLNRVLVAGLIIHQLININEYDLALSKM 1941
Query: 848 IDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVR 907
+ R+ +FAISLL+ + + + +SE + D L K++++ S E L + +E ++
Sbjct: 1942 MIDSRSAPPIDFAISLLRFCLVENNYANLSEFPSTFDLLQKISSRSPS-EMLAKTLEEIK 2000
Query: 908 N 908
N
Sbjct: 2001 N 2001
Score = 55 (24.4 bits), Expect = 1.2e-128, Sum P(4) = 1.2e-128
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 852 RNKAATEFAISLLQTLVTDES-RVVISEL---HNL--VDALAKLAAKPGSPESLQQLIEI 905
+NK E +L QTL++ + + ++S+L H L + +A + K P+ L +L+++
Sbjct: 688 KNKLQNELLTTLFQTLLSQHNYQSIVSQLWKDHPLTVIQIMADITQK--DPKELSRLLDV 745
Query: 906 VR 907
+
Sbjct: 746 AQ 747
Score = 49 (22.3 bits), Expect = 5.9e-190, Sum P(4) = 5.9e-190
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 9 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI-SFIINNISALNVEAKA 67
A P + + + F NI + AE T PA EV+D+ S+ I S E
Sbjct: 857 AAPDQ-IPTDLFNDLKNISAALQTAESETTERRFPA-EVEDETNSYFIKLYSG---EISV 911
Query: 68 KEFTEILKE 76
+ +LKE
Sbjct: 912 DQIISVLKE 920
Score = 48 (22.0 bits), Expect = 2.4e-126, Sum P(3) = 2.4e-126
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 868 VTDESRVVISELHNLVDALAKLAAKPGSPESLQQLI 903
+++ S V+ +++ NL+ L K + K S E L Q+I
Sbjct: 89 ISNLSFVIATQIKNLISNLTKKSYKSNSSE-LSQII 123
Score = 42 (19.8 bits), Expect = 2.4e-128, Sum P(4) = 2.4e-128
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 814 YSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESR 873
Y D+E K + LI+++L++ V + +++ R + I + +L++ +R
Sbjct: 950 YPDKELKITGLLFGSLIKNQLISSQPLRVALKYVLEAMRFPLNSNMFIFGVNSLISFANR 1009
Query: 874 VV 875
+V
Sbjct: 1010 LV 1011
Score = 41 (19.5 bits), Expect = 1.8e-183, Sum P(3) = 1.8e-183
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 858 EFAISLLQTLVTDESRVVISEL 879
+FA S+++T T+++ + I E+
Sbjct: 1613 DFACSIVETAATEKAIISIDEV 1634
Score = 39 (18.8 bits), Expect = 6.6e-189, Sum P(4) = 6.6e-189
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 253 LKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGH 292
+ + KR + NP + N + Q VP I+S +G+
Sbjct: 377 ITNSKRLQQDNPSYVNSIISKVSQQNVPY---QIISSIGY 413
Score = 39 (18.8 bits), Expect = 6.6e-189, Sum P(4) = 6.6e-189
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 103 KFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLT 155
K L + N +N I + + +N + S + SS S LK++ KLT
Sbjct: 381 KRLQQDNPSYVNSIISKVSQQNVPYQIISSIGYSSCSSASTLKDILFQFQKLT 433
Score = 39 (18.8 bits), Expect = 2.9e-183, Sum P(3) = 2.9e-183
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 449 GSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQ 487
G ++ ++ ++ +S Q+ Q I +LL+Q Q
Sbjct: 1728 GVMSQQLVQQQMQQQVSQQILQQQQQQQIQMQLLQQQAQ 1766
Score = 38 (18.4 bits), Expect = 1.2e-128, Sum P(4) = 1.2e-128
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 923 KDDKARQSKDKKAYSHTTANREDYNIP-ESVDPDPV 957
KDD R+ + A+S T N E + PD +
Sbjct: 1211 KDDDKRKKDQEDAFSTTIPIGTLLNASKEMIQPDDI 1246
Score = 37 (18.1 bits), Expect = 3.8e-145, Sum P(4) = 3.8e-145
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 460 LRGS-ISSQLRNSLQGLTIASELLEQAVQLVTNDNL 494
L GS I +QL +S Q L +A + + +A++ N N+
Sbjct: 961 LFGSLIKNQLISS-QPLRVALKYVLEAMRFPLNSNM 995
Score = 37 (18.1 bits), Expect = 6.4e-93, Sum P(3) = 6.4e-93
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1071 KILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLD 1111
K++T F+L +KK N L I+ L++++ D
Sbjct: 1897 KVITTITSFLLFSTPDKK--LNRVLVAGLIIHQLININEYD 1935
>MGI|MGI:2442402 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
MGI:MGI:2442402 GO:GO:0006355 GO:GO:0006351 GO:GO:0005778
GO:GO:0000932 CTD:23019 eggNOG:COG5103 HOVERGEN:HBG060834 KO:K12604
OMA:YLKARAP OrthoDB:EOG495ZQV ChiTaRS:CNOT1 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 EMBL:AC113951
EMBL:AC127300 EMBL:AK031357 EMBL:AK034776 EMBL:AK048177
EMBL:AK143651 EMBL:BC018281 EMBL:BC158073 EMBL:AK129258
IPI:IPI00672703 IPI:IPI00673465 IPI:IPI00880243 IPI:IPI00881912
RefSeq:NP_835179.1 UniGene:Mm.259220 ProteinModelPortal:Q6ZQ08
DIP:DIP-46845N IntAct:Q6ZQ08 STRING:Q6ZQ08 PhosphoSite:Q6ZQ08
PaxDb:Q6ZQ08 PRIDE:Q6ZQ08 Ensembl:ENSMUST00000098473 GeneID:234594
KEGG:mmu:234594 UCSC:uc009myy.1 UCSC:uc009myz.2 UCSC:uc009mzb.2
GeneTree:ENSGT00390000014869 NextBio:382234 Bgee:Q6ZQ08
CleanEx:MM_CNOT1 Genevestigator:Q6ZQ08 Uniprot:Q6ZQ08
Length = 2375
Score = 1358 (483.1 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 279/542 (51%), Positives = 360/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1843 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1902
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1903 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1960
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1961 LLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2020
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2021 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2080
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2081 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2140
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2141 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 2198
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 2199 LQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2247
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2248 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2307
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2308 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2367
Query: 1487 SM 1488
M
Sbjct: 2368 VM 2369
Score = 1017 (363.1 bits), Expect = 1.3e-189, Sum P(3) = 1.3e-189
Identities = 253/664 (38%), Positives = 378/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L A++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1739
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISE--LHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE V I+E L + ++ L ++ A +
Sbjct: 1740 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG 1799
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1800 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1842
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1901
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1902 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1959
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1960 NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 2019
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 2020 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 2079
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 2080 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 2139
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2140 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 2197
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 2198 NLQV----SNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2253
Query: 1365 ALDI 1368
A+D+
Sbjct: 2254 AVDL 2257
Score = 622 (224.0 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 124/296 (41%), Positives = 187/296 (63%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 260
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1365
Score = 335 (123.0 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 75/225 (33%), Positives = 126/225 (56%)
Query: 354 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 412
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1353 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1412
Query: 413 SIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL 472
IA T +++V KD+A++S+E+R+ AAH M+ +L +A +TC+EPL SIS+ L+NS
Sbjct: 1413 KIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSF 1472
Query: 473 -QGLTIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKH 527
L AS E+++QA + DN +L C I++ A +KA +D +A + LR KH
Sbjct: 1473 ASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KH 1531
Query: 528 REGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1532 ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1576
Score = 43 (20.2 bits), Expect = 7.3e-142, Sum P(4) = 7.3e-142
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKALSMLLN 575
Score = 42 (19.8 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 41 (19.5 bits), Expect = 1.2e-141, Sum P(4) = 1.2e-141
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 674 PAATELYAADSTEPVK-EP--GASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L D+ PV+ +P G +S S+ +AAP P+L
Sbjct: 698 PSASSL---DAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL 740
Score = 39 (18.8 bits), Expect = 3.0e-143, Sum P(5) = 3.0e-143
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 667 SVNAAFTPAATELYAADSTEPVKEPGASSQ 696
S+N T T L A D TE + EP + Q
Sbjct: 1068 SINT--TNIDTLLVATDQTERIVEPPENIQ 1095
Score = 37 (18.1 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 876 ISELHNLVDALAKLAAKPGSPESLQQLIEIV 906
I+EL + A+ A ++L+ L+E+V
Sbjct: 1615 ITELEQHLHAIPPTLAMNPQAQALRSLLEVV 1645
Score = 37 (18.1 bits), Expect = 3.0e-143, Sum P(5) = 3.0e-143
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNS 471
A + A V K PL G +++ + S
Sbjct: 1019 AQAQAQVPAKAPLAGQVNTMVTTS 1042
Score = 37 (18.1 bits), Expect = 3.6e-139, Sum P(3) = 3.6e-139
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 78
F SAL A+ ++RE +A A QD I VE E + L ++
Sbjct: 1472 FASALR----TASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEF 1526
>UNIPROTKB|G3V7M0 [details] [associations]
symbol:Cnot1 "RCG39079" species:10116 "Rattus norvegicus"
[GO:0005778 "peroxisomal membrane" evidence=IEA] RGD:1308009
CTD:23019 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 GeneTree:ENSGT00390000014869
EMBL:CH474006 RefSeq:NP_001128312.1 UniGene:Rn.56498 PRIDE:G3V7M0
Ensembl:ENSRNOT00000016563 GeneID:291841 KEGG:rno:291841
NextBio:633244 Uniprot:G3V7M0
Length = 2376
Score = 1358 (483.1 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 279/542 (51%), Positives = 360/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1844 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1903
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1904 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1961
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1962 LLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2021
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2022 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2081
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2082 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2141
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2142 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 2199
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 2200 LQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2248
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2249 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2308
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2309 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2368
Query: 1487 SM 1488
M
Sbjct: 2369 VM 2370
Score = 1013 (361.7 bits), Expect = 4.1e-189, Sum P(3) = 4.1e-189
Identities = 252/664 (37%), Positives = 377/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L ++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1681 LLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1740
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISE--LHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE V I+E L + ++ L ++ A +
Sbjct: 1741 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG 1800
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1801 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1843
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1844 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1902
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1903 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1960
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1961 NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 2020
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 2021 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 2080
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 2081 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 2140
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2141 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 2198
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 2199 NLQV----SNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2254
Query: 1365 ALDI 1368
A+D+
Sbjct: 2255 AVDL 2258
Score = 622 (224.0 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 124/296 (41%), Positives = 187/296 (63%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1252
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 260
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1366
Score = 335 (123.0 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 75/225 (33%), Positives = 126/225 (56%)
Query: 354 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 412
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1354 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1413
Query: 413 SIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL 472
IA T +++V KD+A++S+E+R+ AAH M+ +L +A +TC+EPL SIS+ L+NS
Sbjct: 1414 KIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSF 1473
Query: 473 -QGLTIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKH 527
L AS E+++QA + DN +L C I++ A +KA +D +A + LR KH
Sbjct: 1474 ASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KH 1532
Query: 528 REGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1533 ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1577
Score = 43 (20.2 bits), Expect = 7.3e-142, Sum P(4) = 7.3e-142
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKALSMLLN 575
Score = 42 (19.8 bits), Expect = 1.5e-172, Sum P(4) = 1.5e-172
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 41 (19.5 bits), Expect = 1.2e-141, Sum P(4) = 1.2e-141
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 674 PAATELYAADSTEPVK-EP--GASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L D+ PV+ +P G +S S+ +AAP P+L
Sbjct: 698 PSASSL---DAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL 740
Score = 39 (18.8 bits), Expect = 3.0e-143, Sum P(5) = 3.0e-143
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 667 SVNAAFTPAATELYAADSTEPVKEPGASSQ 696
S+N T T L A D TE + EP + Q
Sbjct: 1069 SINT--TNIDTLLVATDQTERIVEPPENIQ 1096
Score = 37 (18.1 bits), Expect = 1.2e-233, Sum P(4) = 1.2e-233
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 876 ISELHNLVDALAKLAAKPGSPESLQQLIEIV 906
I+EL + A+ A ++L+ L+E+V
Sbjct: 1616 ITELEQHLHAIPPTLAMNPQAQALRSLLEVV 1646
Score = 37 (18.1 bits), Expect = 3.0e-143, Sum P(5) = 3.0e-143
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNS 471
A + A V K PL G +++ + S
Sbjct: 1020 AQAQAQVPAKAPLAGQVNTMVTTS 1043
Score = 37 (18.1 bits), Expect = 3.6e-139, Sum P(3) = 3.6e-139
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 78
F SAL A+ ++RE +A A QD I VE E + L ++
Sbjct: 1473 FASALR----TASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEF 1527
>UNIPROTKB|A5YKK6 [details] [associations]
symbol:CNOT1 "CCR4-NOT transcription complex subunit 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS;IDA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IDA] [GO:2000036 "regulation of
stem cell maintenance" evidence=IMP] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=IDA] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0042974 "retinoic acid receptor binding" evidence=IDA]
[GO:0048387 "negative regulation of retinoic acid receptor
signaling pathway" evidence=IDA] [GO:0030331 "estrogen receptor
binding" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005778 "peroxisomal
membrane" evidence=IDA] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 GO:GO:0005829 GO:GO:0006355 GO:GO:0006351
GO:GO:0005778 GO:GO:0000932 GO:GO:0000289 EMBL:AL117492
EMBL:BX537840 EMBL:CR749237 EMBL:EF553522 EMBL:AC009118
EMBL:AC010287 EMBL:BC000779 EMBL:BC024317 EMBL:BC040523
EMBL:AB023224 EMBL:AF110778 IPI:IPI00166010 IPI:IPI00410157
IPI:IPI00642900 IPI:IPI00880052 PIR:T17270 RefSeq:NP_001252541.1
RefSeq:NP_057368.3 RefSeq:NP_996882.1 UniGene:Hs.460923
UniGene:Hs.731691 PDB:4GMJ PDB:4GML PDBsum:4GMJ PDBsum:4GML
ProteinModelPortal:A5YKK6 DIP:DIP-44954N IntAct:A5YKK6
MINT:MINT-2835018 STRING:A5YKK6 PhosphoSite:A5YKK6 PaxDb:A5YKK6
PeptideAtlas:A5YKK6 PRIDE:A5YKK6 Ensembl:ENST00000317147
Ensembl:ENST00000441024 Ensembl:ENST00000567188
Ensembl:ENST00000569240 GeneID:23019 KEGG:hsa:23019 UCSC:uc002enu.4
UCSC:uc002env.3 UCSC:uc002enx.3 CTD:23019 GeneCards:GC16M058553
H-InvDB:HIX0013093 HGNC:HGNC:7877 MIM:604917 neXtProt:NX_A5YKK6
PharmGKB:PA26672 eggNOG:COG5103 HOVERGEN:HBG060834
InParanoid:A5YKK6 KO:K12604 OMA:YLKARAP OrthoDB:EOG495ZQV
PhylomeDB:A5YKK6 ChiTaRS:CNOT1 GenomeRNAi:23019 NextBio:43960
ArrayExpress:A5YKK6 Bgee:A5YKK6 Genevestigator:A5YKK6
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
Uniprot:A5YKK6
Length = 2376
Score = 1358 (483.1 bits), Expect = 1.9e-233, Sum P(4) = 1.9e-233
Identities = 279/542 (51%), Positives = 360/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1844 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1903
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1904 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1961
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1962 LLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2021
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2022 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2081
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2082 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2141
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2142 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 2199
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 2200 LQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2248
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2249 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2308
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2309 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2368
Query: 1487 SM 1488
M
Sbjct: 2369 VM 2370
Score = 1017 (363.1 bits), Expect = 2.1e-189, Sum P(3) = 2.1e-189
Identities = 251/664 (37%), Positives = 378/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L A++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1740
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A +
Sbjct: 1741 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG 1800
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1801 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1843
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1844 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1902
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1903 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1960
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1961 NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 2020
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 2021 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 2080
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 2081 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 2140
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2141 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 2198
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 2199 NLQV----SNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2254
Query: 1365 ALDI 1368
A+D+
Sbjct: 2255 AVDL 2258
Score = 620 (223.3 bits), Expect = 1.9e-233, Sum P(4) = 1.9e-233
Identities = 123/296 (41%), Positives = 188/296 (63%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 260
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
+ KDV QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDV--KQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS 1366
Score = 335 (123.0 bits), Expect = 1.9e-233, Sum P(4) = 1.9e-233
Identities = 75/225 (33%), Positives = 126/225 (56%)
Query: 354 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 412
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1354 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1413
Query: 413 SIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL 472
IA T +++V KD+A++S+E+R+ AAH M+ +L +A +TC+EPL SIS+ L+NS
Sbjct: 1414 KIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSF 1473
Query: 473 -QGLTIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKH 527
L AS E+++QA + DN +L C I++ A +KA +D +A + LR KH
Sbjct: 1474 ASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KH 1532
Query: 528 REGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1533 ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1577
Score = 43 (20.2 bits), Expect = 7.3e-142, Sum P(4) = 7.3e-142
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKALSMLLN 575
Score = 42 (19.8 bits), Expect = 1.5e-172, Sum P(4) = 1.5e-172
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 42 (19.8 bits), Expect = 9.4e-142, Sum P(4) = 9.4e-142
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 632 VASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEP 691
V++ T ST+ T V + G S+N T T L A D TE + EP
Sbjct: 1036 VSTMVTTSTTTTVAKT--VTVTRPTGVSFKKDVPPSINT--TNIDTLLVATDQTERIVEP 1091
Query: 692 GASSQ 696
+ Q
Sbjct: 1092 PENIQ 1096
Score = 41 (19.5 bits), Expect = 1.2e-141, Sum P(4) = 1.2e-141
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 674 PAATELYAADSTEPVK-EP--GASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L D+ PV+ +P G +S S+ +AAP P+L
Sbjct: 698 PSASSL---DAISPVQIDPLAGMTSLSIGGSAAPHTQSMQGFPPNL 740
Score = 40 (19.1 bits), Expect = 1.5e-141, Sum P(4) = 1.5e-141
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNS 471
A + A V K PL G +S+ + S
Sbjct: 1020 AQAQAQVPAKAPLAGQVSTMVTTS 1043
Score = 37 (18.1 bits), Expect = 1.9e-233, Sum P(4) = 1.9e-233
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 876 ISELHNLVDALAKLAAKPGSPESLQQLIEIV 906
I+EL + A+ A ++L+ L+E+V
Sbjct: 1616 ITELEQHLHAIPPTLAMNPQAQALRSLLEVV 1646
Score = 37 (18.1 bits), Expect = 3.6e-139, Sum P(3) = 3.6e-139
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 78
F SAL A+ ++RE +A A QD I VE E + L ++
Sbjct: 1473 FASALR----TASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEF 1527
>UNIPROTKB|F1MHU9 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:DAAA02046541 IPI:IPI00708264
Ensembl:ENSBTAT00000027695 Uniprot:F1MHU9
Length = 2371
Score = 1358 (483.1 bits), Expect = 2.4e-233, Sum P(4) = 2.4e-233
Identities = 279/542 (51%), Positives = 360/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1839 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1898
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1899 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1956
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1957 LLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2016
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2017 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2076
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2077 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2136
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2137 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 2194
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 2195 LQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2243
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2244 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2303
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2363
Query: 1487 SM 1488
M
Sbjct: 2364 VM 2365
Score = 1017 (363.1 bits), Expect = 2.7e-189, Sum P(3) = 2.7e-189
Identities = 251/664 (37%), Positives = 378/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1616 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1675
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L A++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1676 LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1735
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A +
Sbjct: 1736 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG 1795
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1796 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1838
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1839 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1897
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1898 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1955
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1956 NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 2015
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 2016 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 2075
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 2076 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 2135
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2136 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 2193
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 2194 NLQV----SNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2249
Query: 1365 ALDI 1368
A+D+
Sbjct: 2250 AVDL 2253
Score = 619 (223.0 bits), Expect = 2.4e-233, Sum P(4) = 2.4e-233
Identities = 123/296 (41%), Positives = 187/296 (63%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1069 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1127
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1128 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1187
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1188 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1247
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 260
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1248 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1307
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1308 DEQLSAPKKDV--KQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1361
Score = 335 (123.0 bits), Expect = 2.4e-233, Sum P(4) = 2.4e-233
Identities = 75/225 (33%), Positives = 126/225 (56%)
Query: 354 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 412
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1349 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1408
Query: 413 SIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL 472
IA T +++V KD+A++S+E+R+ AAH M+ +L +A +TC+EPL SIS+ L+NS
Sbjct: 1409 KIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSF 1468
Query: 473 -QGLTIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKH 527
L AS E+++QA + DN +L C I++ A +KA +D +A + LR KH
Sbjct: 1469 ASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KH 1527
Query: 528 REGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1528 ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1572
Score = 43 (20.2 bits), Expect = 7.1e-142, Sum P(4) = 7.1e-142
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKALSMLLN 575
Score = 42 (19.8 bits), Expect = 1.4e-172, Sum P(4) = 1.4e-172
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 42 (19.8 bits), Expect = 9.0e-142, Sum P(4) = 9.0e-142
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 632 VASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEP 691
V++ T ST+ T V + G S+N T T L A D TE + EP
Sbjct: 1031 VSTMVTTSTTTTVAKT--VTVTRPTGVSFKKDVPPSINT--TNIDTLLVATDQTERIVEP 1086
Query: 692 GASSQ 696
+ Q
Sbjct: 1087 PENIQ 1091
Score = 41 (19.5 bits), Expect = 1.1e-141, Sum P(4) = 1.1e-141
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 674 PAATELYAADSTEPVK-EP--GASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L D+ PV+ +P G +S S+ +AAP P+L
Sbjct: 698 PSASSL---DAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL 740
Score = 40 (19.1 bits), Expect = 1.5e-141, Sum P(4) = 1.5e-141
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNS 471
A + A V K PL G +S+ + S
Sbjct: 1015 AQAQAQVPAKAPLAGQVSTMVTTS 1038
Score = 37 (18.1 bits), Expect = 2.4e-233, Sum P(4) = 2.4e-233
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 876 ISELHNLVDALAKLAAKPGSPESLQQLIEIV 906
I+EL + A+ A ++L+ L+E+V
Sbjct: 1611 ITELEQHLHAIPPTLAMNPQAQALRSLLEVV 1641
Score = 37 (18.1 bits), Expect = 3.5e-139, Sum P(3) = 3.5e-139
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 78
F SAL A+ ++RE +A A QD I VE E + L ++
Sbjct: 1468 FASALR----TASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEF 1522
>UNIPROTKB|F1RFU3 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 CTD:23019 KO:K12604 OMA:YLKARAP
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:FP236140 RefSeq:XP_003127000.1
Ensembl:ENSSSCT00000003099 GeneID:100511993 KEGG:ssc:100511993
Uniprot:F1RFU3
Length = 2375
Score = 1358 (483.1 bits), Expect = 3.1e-233, Sum P(4) = 3.1e-233
Identities = 279/542 (51%), Positives = 360/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1843 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1902
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1903 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1960
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1961 LLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2020
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2021 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2080
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2081 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2140
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2141 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 2198
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 2199 LQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2247
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2248 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2307
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2308 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2367
Query: 1487 SM 1488
M
Sbjct: 2368 VM 2369
Score = 1014 (362.0 bits), Expect = 8.2e-189, Sum P(3) = 8.2e-189
Identities = 251/664 (37%), Positives = 377/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L A++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1739
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVI---SELHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE V ++L + ++ L ++ A +
Sbjct: 1740 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHFTEADLFHTIETLMRINAHSRG 1799
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1800 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1842
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1901
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1902 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1959
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1960 NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 2019
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 2020 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 2079
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 2080 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 2139
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 2140 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 2197
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 2198 NLQV----SNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2253
Query: 1365 ALDI 1368
A+D+
Sbjct: 2254 AVDL 2257
Score = 619 (223.0 bits), Expect = 3.1e-233, Sum P(4) = 3.1e-233
Identities = 123/296 (41%), Positives = 187/296 (63%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 260
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDV--KQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1366
Score = 334 (122.6 bits), Expect = 3.1e-233, Sum P(4) = 3.1e-233
Identities = 73/209 (34%), Positives = 120/209 (57%)
Query: 369 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYA 428
+ H+ +N + H ++ V A++RA++E+V +V RS+ IA T +++V KD+A
Sbjct: 1370 LAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA 1429
Query: 429 MESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLE 483
++S+E+R+ AAH M+ +L +A +TC+EPL SIS+ L+NS L AS E+++
Sbjct: 1430 LDSEESRMRMAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMD 1489
Query: 484 QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQ 543
QA + DN +L C I++ A +KA +D +A + LR KH G + DP +
Sbjct: 1490 QAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KHARQEGRRYCDPVVLTY 1548
Query: 544 GSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
+ +PE +R K G + Q VYE+F R
Sbjct: 1549 QAERMPEQIRLKVGGVDPKQLAVYEEFAR 1577
Score = 43 (20.2 bits), Expect = 7.3e-142, Sum P(4) = 7.3e-142
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKALSMLLN 575
Score = 42 (19.8 bits), Expect = 1.8e-172, Sum P(4) = 1.8e-172
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 42 (19.8 bits), Expect = 6.9e-144, Sum P(5) = 6.9e-144
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 632 VASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEP 691
V++ T ST+ T V + G S+N T T L A D TE + EP
Sbjct: 1036 VSTMVTTSTTTTVAKT--VTVTRPTGVSFKKDVPPSINT--TNIDTLLVATDQTERIVEP 1091
Query: 692 GASSQ 696
+ Q
Sbjct: 1092 PENIQ 1096
Score = 41 (19.5 bits), Expect = 8.8e-144, Sum P(5) = 8.8e-144
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 674 PAATELYAADSTEPVK-EP--GASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L D+ PV+ +P G +S S+ +AAP P+L
Sbjct: 698 PSASSL---DAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL 740
Score = 40 (19.1 bits), Expect = 3.0e-202, Sum P(4) = 3.0e-202
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 787 FSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSEL-LNLAEYNVHMA 845
F AH + +R + V+EL V+ D K ++R + L+ E + MA
Sbjct: 1383 FQAHPQLKQCVRQAIERAVQELVHPVV--DRSIKIAMTTCEQIVRKDFALDSEESRMRMA 1440
Score = 40 (19.1 bits), Expect = 1.1e-143, Sum P(5) = 1.1e-143
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNS 471
A + A V K PL G +S+ + S
Sbjct: 1020 AQAQAQVPAKAPLAGQVSTMVTTS 1043
Score = 37 (18.1 bits), Expect = 3.1e-233, Sum P(4) = 3.1e-233
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 876 ISELHNLVDALAKLAAKPGSPESLQQLIEIV 906
I+EL + A+ A ++L+ L+E+V
Sbjct: 1615 ITELEQHLHAIPPTLAMNPQAQALRSLLEVV 1645
Score = 37 (18.1 bits), Expect = 3.6e-139, Sum P(3) = 3.6e-139
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 78
F SAL A+ ++RE +A A QD I VE E + L ++
Sbjct: 1473 FASALR----TASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEF 1527
>ZFIN|ZDB-GENE-040915-1 [details] [associations]
symbol:cnot1 "CCR4-NOT transcription complex, subunit
1" species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] ZFIN:ZDB-GENE-040915-1
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:CU468035 IPI:IPI00829204
Ensembl:ENSDART00000017536 ArrayExpress:F1QAM0 Bgee:F1QAM0
Uniprot:F1QAM0
Length = 2375
Score = 1366 (485.9 bits), Expect = 3.1e-228, Sum P(3) = 3.1e-228
Identities = 278/541 (51%), Positives = 361/541 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1844 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1903
Query: 1012 E--VSVAHCLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIFL 1068
E V +++ +E +P T + +D + +L+ ++K + +KI L
Sbjct: 1904 EMCVEISYRAQAEQQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKINL 1961
Query: 1069 LSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANA 1128
L+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1962 LNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNT 2021
Query: 1129 FHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRNA 1187
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2022 FHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNV 2081
Query: 1188 ELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRL 1247
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRL
Sbjct: 2082 ELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRL 2141
Query: 1248 PDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKL 1307
PDP TPNLK+D+L EI PRI + + + Q + D+D YLKT P +FLSEL+ L
Sbjct: 2142 PDPFTPNLKVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSNL 2199
Query: 1308 LLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALD 1367
+ + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +D
Sbjct: 2200 QV----SNEPGNRYNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHMD 2248
Query: 1368 IFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLF 1427
IFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2249 IFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLL 2308
Query: 1428 ERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDS 1487
ERLIVNRPHPWGLLITFIELIKNP + FW+ F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2309 ERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQV 2368
Query: 1488 M 1488
M
Sbjct: 2369 M 2369
Score = 1022 (364.8 bits), Expect = 2.7e-185, Sum P(3) = 2.7e-185
Identities = 249/663 (37%), Positives = 379/663 (57%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASN---NL 785
Q L A+ A + Q + S + +++ SRD AAL + QK +GL + S L
Sbjct: 1621 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPEL 1680
Query: 786 HFS---AHLAILAAIRDVC----KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
S HL +L A++D + K++T +I +E K+N + LIR+ L+N+
Sbjct: 1681 LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1740
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE S + ++L + ++ L + +A +
Sbjct: 1741 QYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRA 1800
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+++VR+ D+ + +S + E Y+
Sbjct: 1801 NAPEGLPQLMDVVRSNYEAMI----------DRHHGGPNFMMHSGISQASE-YD------ 1843
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1844 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1902
Query: 1011 TE--VSVAHCLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
TE V +++ +E +P T + +D + +L+ ++K + +KI
Sbjct: 1903 TEMCVEISYRAQAEQQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1960
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1961 LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2020
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 2021 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2080
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2081 VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2140
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + + Q + D+D YLKT P +FLSEL+
Sbjct: 2141 LPDPFTPNLKVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSN 2198
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSAA 1365
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ + A
Sbjct: 2199 LQV----SNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLA 2254
Query: 1366 LDI 1368
+D+
Sbjct: 2255 VDL 2257
Score = 581 (209.6 bits), Expect = 3.1e-228, Sum P(3) = 3.1e-228
Identities = 121/296 (40%), Positives = 185/296 (62%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL--KDRKREI 260
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL KD+ + +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDKLKTL 1304
Query: 261 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHV-DLPLDVASPPNSGGPTHLLSQY 315
E K+ + +L+P V A P P + +G PT S +
Sbjct: 1305 EEQLSAPKKETKPPE-ELLPIVTTADSVPFTAAPSTPATTTACTATGPPTPQFSYH 1359
Score = 329 (120.9 bits), Expect = 3.1e-228, Sum P(3) = 3.1e-228
Identities = 76/238 (31%), Positives = 129/238 (54%)
Query: 342 PSAQGLFQASQSQSP-FSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRA 399
P+ A+ +P FS ++ + + H+ IN + L H ++ V A++RA
Sbjct: 1340 PATTTACTATGPPTPQFSYHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRPAIERA 1399
Query: 400 IKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP 459
++E+V +V RS+ IA T +++V KD+A++S+E+ + AAH M+ +L +A +TC+EP
Sbjct: 1400 VQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREP 1459
Query: 460 LRGSISSQLRNSLQGLTIAS-----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTID 514
L SI++ L+NS A E++E+A + DN +L C I++ A +KA +D
Sbjct: 1460 LLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMD 1519
Query: 515 GEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
+A + LR KH G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1520 KRLATEFELR-KHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1576
Score = 49 (22.3 bits), Expect = 7.8e-142, Sum P(3) = 7.8e-142
Identities = 27/94 (28%), Positives = 38/94 (40%)
Query: 585 AMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRP--SDVASGTTESTSA 642
AM + SL S + S G QG+ + + + F + P S G +S
Sbjct: 716 AMGSLSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQ 775
Query: 643 --GFLSTSLVHIGAADGGILHNSESESVNAAFTP 674
G LSTSL IG+ G +S+ S TP
Sbjct: 776 LQGPLSTSLSGIGSGLGMPTVSSDVFSARKMSTP 809
Score = 43 (20.2 bits), Expect = 3.3e-141, Sum P(3) = 3.3e-141
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 503 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHSMAEWYMRGEQYDQAKLSR 559
Query: 824 --DITMGLIR-SELLN 836
D+ L S LLN
Sbjct: 560 ILDVAQDLKSLSMLLN 575
Score = 42 (19.8 bits), Expect = 2.4e-171, Sum P(3) = 2.4e-171
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 50 KISFIINNISALNVEAKAKEFTEIL 74
+IS++++N++ N A +E I+
Sbjct: 12 QISYLVDNLTKKNYRASQQEIQHIV 36
Score = 41 (19.5 bits), Expect = 1.6e-142, Sum P(4) = 1.6e-142
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 632 VASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEP 691
V + TT +T+A T+ + A G S+N T T L A D TE + EP
Sbjct: 1031 VTTATTTTTAA---KTTTITRPTAVGP--KKDVPPSINT--TNIDTLLVATDQTERIVEP 1083
Query: 692 GASSQ 696
+ Q
Sbjct: 1084 PENVQ 1088
Score = 37 (18.1 bits), Expect = 1.6e-142, Sum P(4) = 1.6e-142
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 532 GSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSS 580
G DP + QGS+ P G L+++Q + + P Q+S
Sbjct: 987 GQQSRDPPVKMQGSITTP-------GSLALAQAQAQSQPPKAPQPGQAS 1028
>UNIPROTKB|E1BXD4 [details] [associations]
symbol:LOC100858397 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:AADN02051617 EMBL:AADN02051618
IPI:IPI00596498 Ensembl:ENSGALT00000040121 ArrayExpress:E1BXD4
Uniprot:E1BXD4
Length = 2129
Score = 1362 (484.5 bits), Expect = 3.1e-225, Sum P(3) = 3.1e-225
Identities = 280/542 (51%), Positives = 359/542 (66%)
Query: 955 DPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1011
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR T
Sbjct: 1597 DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT 1656
Query: 1012 E--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIF 1067
E V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1657 EMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKIN 1714
Query: 1068 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1127
LL+K+L + V +L+D E ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1715 LLNKVLGIVVGVLLQDHEVRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 1774
Query: 1128 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRN 1186
FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLRN
Sbjct: 1775 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 1834
Query: 1187 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 1246
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 1835 VELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 1894
Query: 1247 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 1306
LPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 1895 LPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRSN 1952
Query: 1307 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 1366
L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++ SA +
Sbjct: 1953 LQV----SNEPGNRYNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2001
Query: 1367 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 1426
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2002 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL 2061
Query: 1427 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 1486
ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2062 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2121
Query: 1487 SM 1488
M
Sbjct: 2122 VM 2123
Score = 1017 (363.1 bits), Expect = 1.2e-181, Sum P(3) = 1.2e-181
Identities = 250/664 (37%), Positives = 377/664 (56%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L ++ A + Q + S + +++ SRD AAL + QK +GL + S
Sbjct: 1374 QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL 1433
Query: 785 -LHF-SAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 838
L + HL +L A++D K++T +I +E K+N + LIR+ L+N+
Sbjct: 1434 LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1493
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 893
+Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A +
Sbjct: 1494 QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG 1553
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+PE L QL+E+VR+ D+A + +S + E Y+
Sbjct: 1554 NAPEGLPQLMEVVRSNYEAMI----------DRAHGGPNFMMHSGISQASE-YD------ 1596
Query: 954 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1010
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1597 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1655
Query: 1011 TE--VSVAHCLSSEVI-NPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKI 1066
TE V +++ +E NP + +D + +L+ ++K + +KI
Sbjct: 1656 TEMCVEISYRAQAEQQHNPAANPTMIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKI 1713
Query: 1067 FLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 1126
LL+K+L + V +L+D E ++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1714 NLLNKVLGIVVGVLLQDHEVRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC 1773
Query: 1127 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLR 1185
N FH+L+P K P F +AWLEL+SHR F+ ++L Q KGWP +LL++L ++L PFLR
Sbjct: 1774 NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR 1833
Query: 1186 NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM 1245
N EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNM
Sbjct: 1834 NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM 1893
Query: 1246 RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQ 1305
RLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+L+
Sbjct: 1894 RLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSDLRS 1951
Query: 1306 KLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSH-AQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LVLYVG QAI + + S + ST +S+ +
Sbjct: 1952 NLQV----SNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL 2007
Query: 1365 ALDI 1368
A+D+
Sbjct: 2008 AVDL 2011
Score = 548 (198.0 bits), Expect = 3.1e-225, Sum P(3) = 3.1e-225
Identities = 116/299 (38%), Positives = 178/299 (59%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 825 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 883
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 884 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 943
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 944 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1003
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVD---MKDITPTSLLKDRKR- 258
+PPNPWTMAI+ +LAE++ +LK + D ++ F L + + + P SLLKD+ R
Sbjct: 1004 RPPNPWTMAIMNVLAELHQEHDLKKGVVKD-QISFLALSCEELGIASLEPGSLLKDKDRL 1062
Query: 259 -EIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 316
++ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1063 KNLDEQLSAPKKDV--KQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYS 1119
Score = 330 (121.2 bits), Expect = 3.1e-225, Sum P(3) = 3.1e-225
Identities = 74/225 (32%), Positives = 126/225 (56%)
Query: 354 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 412
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1107 QPQYSYHDINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1166
Query: 413 SIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL 472
IA T +++V KD+A++S+E+R+ AAH M+ +L +A +TC+EPL SI++ L+NS
Sbjct: 1167 KIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSF 1226
Query: 473 Q-GLTIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKH 527
L AS +++EQA + DN +L C I++ A +KA +D +A + LR KH
Sbjct: 1227 ATALRAASPQQRDMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELR-KH 1285
Query: 528 REGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
G + DP + + +PE +R K G + Q VYE+F R
Sbjct: 1286 ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFAR 1330
Score = 43 (20.2 bits), Expect = 1.2e-139, Sum P(2) = 1.2e-139
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 767 LAVAQKVFKGLYENASNNLHFSAH-LAILAAIRDVCKLVVKELTSWVIYSDE--ERKFNR 823
++ +F G + N++ LH++ H +IR +L++ + W + ++ + K +R
Sbjct: 254 ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIR---QLIMHAMAEWYMRGEQYDQAKLSR 310
Query: 824 --DITMGL-IRSELLN 836
D+ L S LLN
Sbjct: 311 ILDVAQDLKALSMLLN 326
Score = 41 (19.5 bits), Expect = 6.0e-141, Sum P(3) = 6.0e-141
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 632 VASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEP 691
V++ T ST+ T + I G S+N T T L A D TE + EP
Sbjct: 787 VSTIVTTSTTTTVAKT--ITITRPTGVSFKKDVPPSINT--TNIDTLLVATDQTERIVEP 842
Query: 692 GASSQ 696
+ Q
Sbjct: 843 PENVQ 847
Score = 40 (19.1 bits), Expect = 7.6e-141, Sum P(3) = 7.6e-141
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 674 PAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 716
P+A+ L A + G +S SL +AAP P+L
Sbjct: 449 PSASSLDAISPVQIDSLAGMASLSLGGSAAPHTQSMQGFPPNL 491
Score = 38 (18.4 bits), Expect = 2.1e-194, Sum P(3) = 2.1e-194
Identities = 27/116 (23%), Positives = 46/116 (39%)
Query: 787 FSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSEL-LNLAEYNVHMA 845
F AH + +R + V+EL V+ D K ++R + L+ E + +A
Sbjct: 1136 FQAHPQLKQCVRQAIERAVQELVHPVV--DRSIKIAMTTCEQIVRKDFALDSEESRMRVA 1193
Query: 846 KLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQ 901
RN A I+ + L+ + + L N A A AA P + ++Q
Sbjct: 1194 AH-HMMRNLTAGMAMITCREPLLMS----IATNLKNSF-ATALRAASPQQRDMMEQ 1243
Score = 38 (18.4 bits), Expect = 1.2e-140, Sum P(3) = 1.2e-140
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNSLQGLTIASEL 481
A + A V K PL G +S+ + S T+A +
Sbjct: 771 AQAQAQVPAKAPLAGQVSTIVTTSTT-TTVAKTI 803
>FB|FBgn0085436 [details] [associations]
symbol:Not1 "Not1" species:7227 "Drosophila melanogaster"
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] EMBL:AE013599 GO:GO:0005737
GO:GO:0007095 GO:GO:0048813 GO:GO:0007517 GO:GO:0030014
GO:GO:0000289 KO:K12604 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 UniGene:Dm.4102 GeneID:5740252
KEGG:dme:Dmel_CG34407 CTD:5740252 FlyBase:FBgn0085436 ChiTaRS:NOT1
GenomeRNAi:5740252 NextBio:20891292 RefSeq:NP_001097242.1
RefSeq:NP_724798.3 STRING:A8DY81 EnsemblMetazoa:FBtr0112672
EnsemblMetazoa:FBtr0304957 UCSC:CG34407-RC PhylomeDB:A8DY81
Bgee:A8DY81 Uniprot:A8DY81
Length = 2505
Score = 1358 (483.1 bits), Expect = 2.0e-220, Sum P(2) = 2.0e-220
Identities = 331/841 (39%), Positives = 464/841 (55%)
Query: 666 ESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKY 725
E+V A LYA S PG S A + + +P++ D Y
Sbjct: 1664 EAVRIKVGAAPATLYAVYSEFARSIPGFQQMSDRDIALFVPKPTDLSQPNVFANDDSMVY 1723
Query: 726 HIVAQKLDALIGNDAREAEVQGVISEVPEIILRCIS----RD-EAALAVAQKVFKGLYEN 780
+A K++A + +Q S++ ++ I+ RD E+A + + +GL E
Sbjct: 1724 GELASKMEAFMNTAIGVPTLQIQASKMHMLLNALIATRRLRDQESAFNLLTRAVEGLTEG 1783
Query: 781 ASN--------NLHFSAHLAILAAIRDVCKLVVKELTSWVIYSD--EERKFNRDITMGLI 830
N ++ + HL IL + + E + D EE ++N + LI
Sbjct: 1784 LVNMHENMEQMKMYQNIHLRILGLLNNSFGAPNTERAVTKCFFDIREEVRYNVEAARALI 1843
Query: 831 RSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRV-VIS--ELHNLVDALA 887
S +NL +++ + +D G N A F I+LL+ L+ D+ + ++S E V+ L
Sbjct: 1844 TSHFVNLNQFDGMLRDCMDNGNNYVAISFGIALLERLIMDDRVINIVSDNEFMATVELLG 1903
Query: 888 KLAA-KPGSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDY 946
+L + PE + I+ + + D R Y H+ +
Sbjct: 1904 RLTQHRHRYPECIVNAIDTLWSGNFNSSSDYSPFNGND---RYLSGASHYIHSGM----H 1956
Query: 947 NIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTR----YVLQLHQNGLLKGDDM 1002
++ DP G E+ L +W + R +V +++ G+LK DD+
Sbjct: 1957 HVRSCDTDDPPGLQEKTEFLLKDWVALYTQQNQQSTRDARNFGAFVQKMNTYGILKTDDL 2016
Query: 1003 TDRFFRRLTEV--SVAHCLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVE 1060
RFFR+ T + V + + +E P F ID + L+ +++ E
Sbjct: 2017 ITRFFRQATHICTDVVYRMFAEPSLP-----INQAKNKIFQWIDAFVHLIAMLVRHSG-E 2070
Query: 1061 QGS--SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSN 1118
G+ +KI LL+K+L + + ++KD E + SF Y R F+ +++ + D + +
Sbjct: 2071 AGNPTTKINLLNKVLGIVLGTLIKDHEMRGVSFQQVGYHRFFMMLFMELCTADVILESLM 2130
Query: 1119 FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG-NGQKGWPYIQRLLVNLL 1177
I+SAFA +H+L P P F FAWLEL+SHR F+ ++L+ GQKGWP +LL +L
Sbjct: 2131 HSIVSAFAYTYHLLNPSVAPGFCFAWLELISHRVFLGRILVQIPGQKGWPLYAQLLQDLF 2190
Query: 1178 QFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNII 1237
++L PFLRN ELG PV+ LYKGTLRVLLVLLHDFPEFLCDYHF FCD IPP+C+QMRNII
Sbjct: 2191 KYLAPFLRNTELGKPVQLLYKGTLRVLLVLLHDFPEFLCDYHFGFCDTIPPNCVQMRNII 2250
Query: 1238 LSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGS 1297
LSAFPRNMRLPDP TPNLK+D+L + + P++ S ++ + D+D YLK P
Sbjct: 2251 LSAFPRNMRLPDPFTPNLKVDMLSDSSNAPKVLSSYIMNIQPANFKKDLDSYLKARAP-V 2309
Query: 1298 SFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSL 1357
+FLSEL+ L + SE GTRYN+ L+N+LV+YVG QAI ++ + + +T N +
Sbjct: 2310 TFLSELRGHLQVT-SEP---GTRYNMALMNALVMYVGTQAIALIRNK-NFVPNTSNIAH- 2363
Query: 1358 TAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEI 1417
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +L+L+AEAN E
Sbjct: 2364 -----SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEANSEA 2418
Query: 1418 IQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 1477
IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP Y FW+ F+ CAPEI KLFESVARS
Sbjct: 2419 IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEITKLFESVARS 2478
Query: 1478 C 1478
C
Sbjct: 2479 C 2479
Score = 818 (293.0 bits), Expect = 2.0e-220, Sum P(2) = 2.0e-220
Identities = 207/594 (34%), Positives = 317/594 (53%)
Query: 9 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAK 68
A S +A NI+TL+ A +E + P VQDK +FI NN+S LN+ K
Sbjct: 1118 AAVSHATRMKSIANATNIDTLLVA--NQEEKVTVPPEPVQDKTAFIFNNLSQLNIPQKCD 1175
Query: 69 EFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVL 128
E EI+ ++Y+PW AQY+V+KRAS+E NFH LY FLD + + +NR + + T N KVL
Sbjct: 1176 EIKEIMTKEYWPWLAQYLVLKRASMEFNFHTLYYNFLDALKNGEINRFVTKETLRNIKVL 1235
Query: 129 LGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVI 186
L S+ + +RSLLKNLG WLG +T+GRN+ + ++D KSL+ EAY KG ++ V+
Sbjct: 1236 LRSDKGVINFSDRSLLKNLGHWLGMMTLGRNRPILQLDLDLKSLLAEAYHKGQQELLFVV 1295
Query: 187 PFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKD 246
PF +KILE S ++ PNPWTM I+ +LAE++ P+LK+NLKF+IEVL K L +++
Sbjct: 1296 PFVAKILESSAKSRIFRSPNPWTMGIMYVLAELHQEPDLKLNLKFEIEVLCKTLNLELAK 1355
Query: 247 ITPTSLLKD--RKREIE---GNPDFSNKDVGASQPQLVPEVK-PAIVSPLGHVDLP--LD 298
+ LKD R IE P + AS P L E + PA P P
Sbjct: 1356 LRQVIYLKDPNRTHRIEEQMSQPKPKQLEPVASAPALPREQQSPAQPPPPPQQQQPPQQQ 1415
Query: 299 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 358
V PP+S +Q AA + +++G + S LP+ + +S
Sbjct: 1416 VPPPPSSADVD---AQNAAAMMMAAGGANSTPGSVS---SPNLPTDSSQVALPPPEPRYS 1469
Query: 359 VSQLSTP-IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQ 417
++ IG +++ L + + +V A++R I + + IV RS+ IA
Sbjct: 1470 YVDVNVSNFQLIGQQLVLPPNTPFLHANPGIKHMVVNAVERTITDWLQPIVDRSIRIACA 1529
Query: 418 TTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSL----Q 473
TT++++ KD+A+++DE R+ AAH MV +LA +A +T K+ + +IS L +L
Sbjct: 1530 TTEQIIRKDFALDADENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHKALLSGLN 1589
Query: 474 GLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGS 533
G+ +E+ A+QL + +N++L CA I++ + +KA ID ++ R+ RE G+
Sbjct: 1590 GMPSMAEIQAAAMQLAS-ENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRKIAREE-GN 1647
Query: 534 SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVR-LPWQNQSSQGSHAM 586
F D I +PEA+R K G + VY +F R +P Q S A+
Sbjct: 1648 RFVDAQILTYQQERLPEAVRIKVGAAPATLYAVYSEFARSIPGFQQMSDRDIAL 1701
Score = 60 (26.2 bits), Expect = 6.0e-142, Sum P(3) = 6.0e-142
Identities = 30/108 (27%), Positives = 41/108 (37%)
Query: 275 QPQLVPEVKPAIVSPLGH--VDLPLDVASPPN----SGG-PTHLLSQYAAPLRLSSGTLM 327
QP LVP P I+ GH +DLP + PP SG + PL S L
Sbjct: 767 QPGLVPPPPPTILR--GHRGMDLPGGIVPPPPQQPFSGNLNAQMFGPGMDPLTNMSNNLA 824
Query: 328 E---DEKLAALGISDQLPSAQGLFQASQSQSPFSVSQL--STPIPNIG 370
A + L S L + P ++ Q+ + P PN+G
Sbjct: 825 GLNLSGPNGAFNFGNMLTSPSRLMTPGANPYPLNLMQMPQAPPPPNVG 872
Score = 47 (21.6 bits), Expect = 6.4e-139, Sum P(2) = 6.4e-139
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 614 YSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAAD 656
Y S+ + S A TT S S+ F + +L +G D
Sbjct: 225 YGSTTATIAGAGASETDAEAEATTNSNSSSFEADALNEVGIED 267
Score = 43 (20.2 bits), Expect = 6.0e-142, Sum P(3) = 6.0e-142
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 30 VAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEIL 74
+A A ET EA A+ + SF + ++ + +E +EI+
Sbjct: 232 IAGAGASETDAEAEATTNSNSSSFEADALNEVGIEDIYDHLSEII 276
Score = 42 (19.8 bits), Expect = 4.7e-140, Sum P(3) = 4.7e-140
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 608 GQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAG 643
GQG G S+S+GS+ + + S S G
Sbjct: 357 GQGQGGGSNSSGSSQTQITPQQQNPGSSNNNDGSDG 392
Score = 40 (19.1 bits), Expect = 7.7e-140, Sum P(3) = 7.7e-140
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 575 WQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSS 617
W Q QG + S+GS + Q + G+ G SSS
Sbjct: 355 WPGQG-QGGGSNSSGSSQTQITPQQQNPGSSNNNDGSDGNSSS 396
Score = 37 (18.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1461 IRCAPE-IEKLFESVARSCGGLKPVDDSMVSGWVPDNT 1497
+ AP + ++ ARS G + + D ++ +VP T
Sbjct: 1670 VGAAPATLYAVYSEFARSIPGFQQMSDRDIALFVPKPT 1707
>WB|WBGene00002845 [details] [associations]
symbol:let-711 species:6239 "Caenorhabditis elegans"
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0010467 "gene
expression" evidence=IMP] [GO:0040001 "establishment of mitotic
spindle localization" evidence=IMP] [GO:0030953 "astral microtubule
organization" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0017148 "negative regulation
of translation" evidence=IMP] GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0010467
GO:GO:0002119 GO:GO:0017148 GO:GO:0018996 GO:GO:0040011
GO:GO:0000003 GO:GO:0000956 GO:GO:0030953 EMBL:FO081266
GO:GO:0040001 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 STRING:Q20937 PaxDb:Q20937
EnsemblMetazoa:F57B9.2 KEGG:cel:CELE_F57B9.2 UCSC:F57B9.2
CTD:175971 WormBase:F57B9.2 HOGENOM:HOG000020862 InParanoid:Q20937
OMA:HMDHEVR NextBio:890552 Uniprot:Q20937
Length = 2641
Score = 1052 (375.4 bits), Expect = 2.7e-169, Sum P(2) = 2.7e-169
Identities = 254/694 (36%), Positives = 375/694 (54%)
Query: 806 KELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQ 865
+ +T+ ++ + K+N + L + LL ++ H+A +D G N A FA ++
Sbjct: 1937 RRITTAIMQIRSDYKWNMEGIEILFKQNLLQSVLWDQHLAGSMDNGGNMEAVLFAQKFVR 1996
Query: 866 TLVT-DESRV-VISELHNLV-DALAKLAAKPGSPESLQQLIEIVRNPXXXXXXXXXXXXX 922
++ D SR+ + E L + L KL + + + + N
Sbjct: 1997 SIGGGDMSRIQFLKERFPLTCEQLTKLHQLQSATRT--EGMNNAMNNGAGNAAHHHAGLQ 2054
Query: 923 KDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELP-G--S 979
+ + +A D D + +V ++ EW +C P G S
Sbjct: 2055 QQPPVALPMEAAPMPQASA---DAMAQRGYDDQEM--TAKVEIIMREWIGLCYSPTGQRS 2109
Query: 980 NDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE--VSVA-HCLSSEVINPGTXXXXXXXX 1036
+ + + +H++G+L DD +FFR E V ++ + SE + G
Sbjct: 2110 PQESLAQMIQLMHEHGVLATDDKITQFFRLCVENCVDISVRVMKSEQLANGLPTTLIRHR 2169
Query: 1037 XXXFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPY 1096
+ +D + KLM +++ Q +KI LL K+L + V + D E +K FN PY
Sbjct: 2170 C--YYTLDAFVKLMALMIRHSDNGQSQNKINLLKKLLNIIVGVLHMDHEVRKQDFNAMPY 2227
Query: 1097 FRLFINWLLDMSSLDPVA--DGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFM 1154
R+ I+ +++ DP+ + + IL AF F LQP ++P F+FAWL++V HR+ +
Sbjct: 2228 HRILISLFNEITGPDPLKLLEPIAWSILEAFGQTFFALQPRRMPGFAFAWLDIVGHRNVI 2287
Query: 1155 PKLLIGNG--------QKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLV 1206
+LL G + Y Q L+++ L+FL PFLRN +L + LYKGTLRVLLV
Sbjct: 2288 GRLLANTGIAETVDAVKTAATYTQ-LIISHLKFLAPFLRNIQLPKSIAILYKGTLRVLLV 2346
Query: 1207 LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK-IDLLPEIRD 1265
+LHDFPE LC++H+ CD IPP+C+Q+RN+ILSA+PR MRLPDP N K +D +PE+
Sbjct: 2347 ILHDFPELLCEFHYVICDTIPPNCVQLRNLILSAYPRQMRLPDPFALNFKQVDTIPEMAV 2406
Query: 1266 PPRIFSEVD-AALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVP 1324
P+ S ++ A + +R +D+YL + FL L LL ++A GT+YN
Sbjct: 2407 EPK--SNLNMATIIPDNIRIPLDEYL-ANRISVDFLPNLPT-LLQTQNQA---GTKYNTT 2459
Query: 1325 LINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLF 1384
++N+LVLYVG++AI L R + N + T+++ DIFQ L LDTEGRYL
Sbjct: 2460 VMNALVLYVGIRAIEHLHLRRQRISTL--NIAHTSYM-----DIFQNLAIQLDTEGRYLL 2512
Query: 1385 LNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITF 1444
N ANQLRYPN HTHYFS V LYL+ + + IQEQITR+LFERL+ RPHPWGLLITF
Sbjct: 2513 FNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRILFERLVALRPHPWGLLITF 2572
Query: 1445 IELIKNPRYNFWNQSFIRCAPEIEKLFESVARSC 1478
IELIKNP YNFW F CAPEI++LF++VA +C
Sbjct: 2573 IELIKNPTYNFWRYEFTSCAPEIQRLFQNVANTC 2606
Score = 677 (243.4 bits), Expect = 2.7e-169, Sum P(2) = 2.7e-169
Identities = 189/600 (31%), Positives = 308/600 (51%)
Query: 11 PSRGVTSTKFGSAL---NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKA 67
P + + + G+ L N++TLV A + I PA + DKISF+ NN+S N+ K
Sbjct: 1236 PKNSLPANRTGNVLSYTNVDTLVMATNKDGAEIAQPAEAIVDKISFLFNNLSQSNLIQKK 1295
Query: 68 KEFTEILKEQ---YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYEN 124
E E++ + + W AQY+VMKR SIE NF LY +F++ + + L++ I + T+ N
Sbjct: 1296 DEVVEMISDHGDAFTLWLAQYIVMKRVSIEQNFQPLYNQFVNAIENPYLDQCIKRETFRN 1355
Query: 125 CKVLLGSE---LIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL 181
++LL ++ + S+ +R LLKNLGSWLG +TI RN+ + ++D KSL++EAY KG
Sbjct: 1356 IRILLRTDKRTTVASNYSDRQLLKNLGSWLGAITIARNKPILLNDLDLKSLLLEAYYKGQ 1415
Query: 182 --MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKN 239
++ V+PF SKIL C + + P W +IL +LAE+++ P+LK+NLKF+IEVL K
Sbjct: 1416 AELLYVVPFISKILTACSKTSLFTPTCAWIRSILKVLAELHNEPDLKINLKFEIEVLCKE 1475
Query: 240 LGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDV 299
L VD+ + +LKD ++ + + + ++P+ V+ I G + L
Sbjct: 1476 LNVDLNQLQMDGILKDTEKLVRVPQQLCDVKL-LTRPEAASPVQSKIHMS-GSAE-QLSG 1532
Query: 300 ASP--PNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQ-SQSP 356
SP P+ P + L SGT G Q AQ + + +
Sbjct: 1533 MSPAIPDQVKPA---TPQPTEAELQSGTG---------GGGSQGAEAQVVPNVTHFAYHD 1580
Query: 357 FSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIAT 416
+V IP HV I L LH H + +V AM AIKE++ + +R++ IA
Sbjct: 1581 INVLTYDGLIP----HVKIVSHLPLFQLHPHAKHLVRPAMIHAIKELIGPVTERALKIAM 1636
Query: 417 QTTKELVLKDYAMESDETRIYNAA-HLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGL 475
T+ LV KD+A++ +E + A+ H+M A AG +A +TC++PL S+ S L N+
Sbjct: 1637 TVTESLVRKDFALDPEEQNLRAASFHMMRAMTAG-MAMITCRDPLASSMHSNLANAFSSS 1695
Query: 476 ---TIAS----ELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHR 528
T A+ +++E A +T DN++L I + A +KA Q I+ + + +++
Sbjct: 1696 LRSTAANPEMKQMIEDAAATITQDNVELSTNFIVKTACEKATQDIEKRL--EADYQKRIA 1753
Query: 529 EGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSA 588
SF+ I A +P+A+ PG + +Y+ F +++ G +SA
Sbjct: 1754 AKAEMSFYRDEIAAAIHAQLPKAIATVPGPTDKALMGIYDQFSSRICGFKANSGEDPVSA 1813
Score = 49 (22.3 bits), Expect = 8.1e-103, Sum P(3) = 8.1e-103
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 61 LNVEAKAKEFTEILKEQYYPWFAQ-YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQ 119
+N + ++ F E ++E+ +F + Y V S+E N DL +F +V++ R ++
Sbjct: 1027 MNEDFQSMTFAEDIQEEANSYFEKIYSVNNAMSVE-NLIDLLKRF--RVSNDRRERLVLA 1083
Query: 120 ATYEN 124
+N
Sbjct: 1084 CVVKN 1088
Score = 43 (20.2 bits), Expect = 8.1e-103, Sum P(3) = 8.1e-103
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 333 AALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGT 371
A +GI DQ S F+A+ + P S S I + T
Sbjct: 1787 ALMGIYDQFSSRICGFKANSGEDPVSAEPGSGAITPVQT 1825
Score = 42 (19.8 bits), Expect = 1.0e-102, Sum P(3) = 1.0e-102
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 800 VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLID 849
V K + +E + Y + E + + G+IR ++++ ++ + K+I+
Sbjct: 1085 VVKNLFEEYRFFHEYPERELRTTAAVYGGIIREDIISNVQFATAVRKVIE 1134
Score = 41 (19.5 bits), Expect = 7.2e-102, Sum P(3) = 7.2e-102
Identities = 46/179 (25%), Positives = 70/179 (39%)
Query: 453 HVT-CKEPLRGSISSQLRNSLQGL-----TIASELLEQAVQLVTNDNLDLGCAV------ 500
HV C + + SSQL L T SELL QA + + +DL C
Sbjct: 629 HVIYCLTSMHAADSSQLAKILDVAHDIKPTGLSELLNQAPKHLAF-MVDLACLASKRDYL 687
Query: 501 -IEQAATDKAIQTIDGE---IAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVP-EALRPK 555
+E+ DK + GE +A +++K++ + P A + G P E L+
Sbjct: 688 NLEKWIEDK--EKAHGEAMTVAVLQFIQKKYQHAQLVAAIAPKTQAT-TPGAPSEPLQVL 744
Query: 556 PGHLSVSQQRVYEDFVRLPWQ---NQSSQGSHAMSAGSLT-SSGDAAQASAYGLAGGQG 610
+S ++ L +Q S + S S G + SSG Q +G GG G
Sbjct: 745 IPFVSKRARKPLRQQFPLVFQVMKENSGRSSSVSSGGHVQQSSGSQPQQQQFG--GGSG 801
Score = 38 (18.4 bits), Expect = 1.5e-101, Sum P(3) = 1.5e-101
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 554 PKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSA 588
P P +S S Q + L + S+ G HA A
Sbjct: 916 PPPSSMSPSTQMMRSLIPPLTQRQNSNSGWHAAPA 950
>GENEDB_PFALCIPARUM|PF11_0049 [details] [associations]
symbol:PF11_0049 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 968 (345.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 192/437 (43%), Positives = 286/437 (65%)
Query: 1043 IDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFIN 1102
ID AK+++ ++K ++Q S L K++ + + I+ ++ + K++FN RPY+RLF++
Sbjct: 2642 IDALAKMIICMMKLIDIQQ-ISPFVLFQKVMNIFCRIIVYESRKNKSNFNQRPYYRLFLS 2700
Query: 1103 WLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNG 1162
L++++ + + + + AF +L P++VPAF FAWLEL+SH+ F+P++L
Sbjct: 2701 ILIEINKYEKSFEDIYNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL--KS 2758
Query: 1163 QKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTF 1222
KGW +LL+ LL+FL FL+N L ++ LY+GTLR LL+LLHDFPEFLC Y+F+F
Sbjct: 2759 SKGWYIYNKLLIYLLEFLYIFLKNNYLTDSIKILYRGTLRTLLILLHDFPEFLCVYNFSF 2818
Query: 1223 CDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQM 1282
C+VIP +C+Q+RN+ILSAFPRN++LP P PNLKID LPEI+ PP I + L +
Sbjct: 2819 CNVIPLNCVQLRNLILSAFPRNIKLPHPFNPNLKIDELPEIKIPPVILNNFTFILIDYNI 2878
Query: 1283 RADVDDYLKTGQPGSSFLSELKQKLLLPPS-EAASAGTRYNVPLINSLVLYVGMQAIHQL 1341
+ D+++Y + +L ++ +KL++ +A T+YNV LIN++VLY+GM +
Sbjct: 2879 KKDINNYFL--KRNIIYLQKIHKKLIIKNKMKALYLKTKYNVSLINAVVLYIGMSLPSSI 2936
Query: 1342 QTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHY 1401
+ +QS A++I L D EGR+ ++ AN LRYPN+HTHY
Sbjct: 2937 LIFHNSSQS------------HPAIEIILYLTYKFDMEGRHYLFSSIANHLRYPNSHTHY 2984
Query: 1402 FSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFI 1461
FS +LL+++ +N EII EQIT +L ERLIV+RPHPWGLLITFIELI+NP + FW SF+
Sbjct: 2985 FSCLLLWIFKVSNTEIINEQITGILIERLIVHRPHPWGLLITFIELIRNPIFKFWQCSFV 3044
Query: 1462 RCAPEIEKLFESVARSC 1478
PEIE +F+S+A SC
Sbjct: 3045 SVVPEIENMFQSIAHSC 3061
Score = 445 (161.7 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 95/250 (38%), Positives = 152/250 (60%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 79
FG IE L+ A E + I P+S + ++ I N + N++ K K + ++ Y+
Sbjct: 606 FGLG-QIECLMDATELTKNII-LPSSIIIGEVFSIFNTLCLFNIDEKIKILKDFMQPDYF 663
Query: 80 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSEL--IKSS 137
W A Y+V RAS E N H+++L+F+DK++ I+ TY+ C ++L + +K
Sbjct: 664 NWLAFYIVKSRASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYD-CILILFKYINELKEV 722
Query: 138 SEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 197
S R++LKNLGSWLG +T+GRN+ L+++ +D K ++ EAY+KG ++ ++P KILE +
Sbjct: 723 SAFRTVLKNLGSWLGFITLGRNRPLKSKILDLKVVLFEAYDKGCLVCILPMVCKILESIK 782
Query: 198 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI-TPTSLLKDR 256
S ++PPNPWT AIL LL EI+ +PN+K + F++EVLFKNL +++++ T LL R
Sbjct: 783 LSKNFKPPNPWTTAILCLLTEIHELPNVKTYIIFEVEVLFKNLSLNIQEFQNKTILLSKR 842
Query: 257 KREIEGNPDF 266
DF
Sbjct: 843 MPPQNKKSDF 852
Score = 341 (125.1 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 75/165 (45%), Positives = 111/165 (67%)
Query: 366 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 425
+ ++G VII+ + + +RVVP+A+DRAI+EI++ I++RSVSI TT+E++ K
Sbjct: 1061 LQSLGNAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICK 1120
Query: 426 DYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS----EL 481
D+ +E++E I AAH+MVASLA SLA TCKEPLR S++ LR LQ + L
Sbjct: 1121 DFCLETNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTSTKDCNDQVL 1180
Query: 482 LEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRK 526
+EQ VQ++ DNL+LGC +IEQA +KAI+ I+ E + L L ++
Sbjct: 1181 IEQVVQILCADNLELGCNLIEQAVIEKAIKDIN-ESLEPLFLTKE 1224
Score = 76 (31.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 820 KFNRDITMGLIRSELLNLAEYNVHMAK-LIDGGRNKA-ATEFAISLLQTLVTDESRVVIS 877
K+N ++T GLIR L+++ +Y ++ K LI+ N EF I L + ++ D +
Sbjct: 1605 KYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKNILIDFHIYRYN 1664
Query: 878 ELHNLVDALAK 888
+ N+ + K
Sbjct: 1665 DFQNIFSLINK 1675
Score = 53 (23.7 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 961 EQVSMLFAEWYQICELPGSNDA--ACTRYVLQLHQNGLLKGDDMTDRFF 1007
E +S F +W ++ L ++ + ++ + GLLK D D FF
Sbjct: 2133 EIISFAFNQWVKLTSLNNIDNPNESYMKFFQSISNQGLLKIDSNIDNFF 2181
Score = 49 (22.3 bits), Expect = 1.7e-66, Sum P(5) = 1.7e-66
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 1385 LNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 1421
LN A +++ NN T YFS V+ + N+E QE+
Sbjct: 1709 LNVEAQKIK-ENNETVYFSDVMQFCVEYFNKE--QEE 1742
Score = 40 (19.1 bits), Expect = 2.9e-94, Sum P(5) = 2.9e-94
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 424 LKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLE 483
+ Y + D N + +V L G L + + L SI++ + N Q + S+ +
Sbjct: 298 MNGYDINHDNINKRNNSINVVNVLDGILNNNINNDNLLSSINNMVPNYQQQVPNFSQHIN 357
Query: 484 QAVQLVTNDNLDL 496
+ NDN+ L
Sbjct: 358 NDISSNINDNIIL 370
Score = 40 (19.1 bits), Expect = 1.3e-91, Sum P(2) = 1.3e-91
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 48 QDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDK 107
+ KI F + L V + ++ T +E F Q++ + + N ++ Y+KF
Sbjct: 2106 KSKI-FKDKGVGGLRVVPRPQQVTNEHEEIISFAFNQWVKLTSLNNIDNPNESYMKFFQS 2164
Query: 108 VNSKAL 113
++++ L
Sbjct: 2165 ISNQGL 2170
Score = 39 (18.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 742 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYE 779
+ + +I +PEI ++ E ++ K++ L E
Sbjct: 1452 DGNIFNLIKSIPEIAALTKNKYETIISYTNKIYTFLLE 1489
Score = 39 (18.8 bits), Expect = 2.3e-164, Sum P(5) = 2.3e-164
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 715 SLQTRDALDKYHIVAQKL 732
++ ++A+DK ++ AQK+
Sbjct: 1699 NVNIKEAIDKLNVEAQKI 1716
Score = 38 (18.4 bits), Expect = 4.6e-94, Sum P(5) = 4.6e-94
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 366 IPNIGTHVIINQKLTALGLHLHFQ 389
+PN+ T++I ++ L L+ Q
Sbjct: 807 LPNVKTYIIFEVEVLFKNLSLNIQ 830
>UNIPROTKB|Q8IIW4 [details] [associations]
symbol:PF11_0049 "NOT family protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 968 (345.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 192/437 (43%), Positives = 286/437 (65%)
Query: 1043 IDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFIN 1102
ID AK+++ ++K ++Q S L K++ + + I+ ++ + K++FN RPY+RLF++
Sbjct: 2642 IDALAKMIICMMKLIDIQQ-ISPFVLFQKVMNIFCRIIVYESRKNKSNFNQRPYYRLFLS 2700
Query: 1103 WLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNG 1162
L++++ + + + + AF +L P++VPAF FAWLEL+SH+ F+P++L
Sbjct: 2701 ILIEINKYEKSFEDIYNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL--KS 2758
Query: 1163 QKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTF 1222
KGW +LL+ LL+FL FL+N L ++ LY+GTLR LL+LLHDFPEFLC Y+F+F
Sbjct: 2759 SKGWYIYNKLLIYLLEFLYIFLKNNYLTDSIKILYRGTLRTLLILLHDFPEFLCVYNFSF 2818
Query: 1223 CDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQM 1282
C+VIP +C+Q+RN+ILSAFPRN++LP P PNLKID LPEI+ PP I + L +
Sbjct: 2819 CNVIPLNCVQLRNLILSAFPRNIKLPHPFNPNLKIDELPEIKIPPVILNNFTFILIDYNI 2878
Query: 1283 RADVDDYLKTGQPGSSFLSELKQKLLLPPS-EAASAGTRYNVPLINSLVLYVGMQAIHQL 1341
+ D+++Y + +L ++ +KL++ +A T+YNV LIN++VLY+GM +
Sbjct: 2879 KKDINNYFL--KRNIIYLQKIHKKLIIKNKMKALYLKTKYNVSLINAVVLYIGMSLPSSI 2936
Query: 1342 QTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHY 1401
+ +QS A++I L D EGR+ ++ AN LRYPN+HTHY
Sbjct: 2937 LIFHNSSQS------------HPAIEIILYLTYKFDMEGRHYLFSSIANHLRYPNSHTHY 2984
Query: 1402 FSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFI 1461
FS +LL+++ +N EII EQIT +L ERLIV+RPHPWGLLITFIELI+NP + FW SF+
Sbjct: 2985 FSCLLLWIFKVSNTEIINEQITGILIERLIVHRPHPWGLLITFIELIRNPIFKFWQCSFV 3044
Query: 1462 RCAPEIEKLFESVARSC 1478
PEIE +F+S+A SC
Sbjct: 3045 SVVPEIENMFQSIAHSC 3061
Score = 445 (161.7 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 95/250 (38%), Positives = 152/250 (60%)
Query: 20 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 79
FG IE L+ A E + I P+S + ++ I N + N++ K K + ++ Y+
Sbjct: 606 FGLG-QIECLMDATELTKNII-LPSSIIIGEVFSIFNTLCLFNIDEKIKILKDFMQPDYF 663
Query: 80 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSEL--IKSS 137
W A Y+V RAS E N H+++L+F+DK++ I+ TY+ C ++L + +K
Sbjct: 664 NWLAFYIVKSRASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYD-CILILFKYINELKEV 722
Query: 138 SEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 197
S R++LKNLGSWLG +T+GRN+ L+++ +D K ++ EAY+KG ++ ++P KILE +
Sbjct: 723 SAFRTVLKNLGSWLGFITLGRNRPLKSKILDLKVVLFEAYDKGCLVCILPMVCKILESIK 782
Query: 198 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI-TPTSLLKDR 256
S ++PPNPWT AIL LL EI+ +PN+K + F++EVLFKNL +++++ T LL R
Sbjct: 783 LSKNFKPPNPWTTAILCLLTEIHELPNVKTYIIFEVEVLFKNLSLNIQEFQNKTILLSKR 842
Query: 257 KREIEGNPDF 266
DF
Sbjct: 843 MPPQNKKSDF 852
Score = 341 (125.1 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 75/165 (45%), Positives = 111/165 (67%)
Query: 366 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 425
+ ++G VII+ + + +RVVP+A+DRAI+EI++ I++RSVSI TT+E++ K
Sbjct: 1061 LQSLGNAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICK 1120
Query: 426 DYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS----EL 481
D+ +E++E I AAH+MVASLA SLA TCKEPLR S++ LR LQ + L
Sbjct: 1121 DFCLETNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTSTKDCNDQVL 1180
Query: 482 LEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRK 526
+EQ VQ++ DNL+LGC +IEQA +KAI+ I+ E + L L ++
Sbjct: 1181 IEQVVQILCADNLELGCNLIEQAVIEKAIKDIN-ESLEPLFLTKE 1224
Score = 76 (31.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 820 KFNRDITMGLIRSELLNLAEYNVHMAK-LIDGGRNKA-ATEFAISLLQTLVTDESRVVIS 877
K+N ++T GLIR L+++ +Y ++ K LI+ N EF I L + ++ D +
Sbjct: 1605 KYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKNILIDFHIYRYN 1664
Query: 878 ELHNLVDALAK 888
+ N+ + K
Sbjct: 1665 DFQNIFSLINK 1675
Score = 53 (23.7 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 961 EQVSMLFAEWYQICELPGSNDA--ACTRYVLQLHQNGLLKGDDMTDRFF 1007
E +S F +W ++ L ++ + ++ + GLLK D D FF
Sbjct: 2133 EIISFAFNQWVKLTSLNNIDNPNESYMKFFQSISNQGLLKIDSNIDNFF 2181
Score = 49 (22.3 bits), Expect = 1.7e-66, Sum P(5) = 1.7e-66
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 1385 LNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 1421
LN A +++ NN T YFS V+ + N+E QE+
Sbjct: 1709 LNVEAQKIK-ENNETVYFSDVMQFCVEYFNKE--QEE 1742
Score = 40 (19.1 bits), Expect = 2.9e-94, Sum P(5) = 2.9e-94
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 424 LKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLE 483
+ Y + D N + +V L G L + + L SI++ + N Q + S+ +
Sbjct: 298 MNGYDINHDNINKRNNSINVVNVLDGILNNNINNDNLLSSINNMVPNYQQQVPNFSQHIN 357
Query: 484 QAVQLVTNDNLDL 496
+ NDN+ L
Sbjct: 358 NDISSNINDNIIL 370
Score = 40 (19.1 bits), Expect = 1.3e-91, Sum P(2) = 1.3e-91
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 48 QDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDK 107
+ KI F + L V + ++ T +E F Q++ + + N ++ Y+KF
Sbjct: 2106 KSKI-FKDKGVGGLRVVPRPQQVTNEHEEIISFAFNQWVKLTSLNNIDNPNESYMKFFQS 2164
Query: 108 VNSKAL 113
++++ L
Sbjct: 2165 ISNQGL 2170
Score = 39 (18.8 bits), Expect = 1.1e-167, Sum P(6) = 1.1e-167
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 742 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYE 779
+ + +I +PEI ++ E ++ K++ L E
Sbjct: 1452 DGNIFNLIKSIPEIAALTKNKYETIISYTNKIYTFLLE 1489
Score = 39 (18.8 bits), Expect = 2.3e-164, Sum P(5) = 2.3e-164
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 715 SLQTRDALDKYHIVAQKL 732
++ ++A+DK ++ AQK+
Sbjct: 1699 NVNIKEAIDKLNVEAQKI 1716
Score = 38 (18.4 bits), Expect = 4.6e-94, Sum P(5) = 4.6e-94
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 366 IPNIGTHVIINQKLTALGLHLHFQ 389
+PN+ T++I ++ L L+ Q
Sbjct: 807 LPNVKTYIIFEVEVLFKNLSLNIQ 830
>ASPGD|ASPL0000078074 [details] [associations]
symbol:AN4965 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5103 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 OrthoDB:EOG4SFDF0 OMA:VIQEQIN
RefSeq:XP_662569.1 ProteinModelPortal:Q5B3B5 STRING:Q5B3B5
EnsemblFungi:CADANIAT00005431 GeneID:2872761 KEGG:ani:AN4965.2
HOGENOM:HOG000196837 Uniprot:Q5B3B5
Length = 2317
Score = 765 (274.4 bits), Expect = 1.8e-164, Sum P(4) = 1.8e-164
Identities = 191/541 (35%), Positives = 292/541 (53%)
Query: 945 DYNIPESVDP---DPVGFP-EQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGD 1000
D IPE V+P D +Q+ +F EW I + PG+ D ++ +HQ ++
Sbjct: 1796 DSGIPEVVNPLLSDKARSKRDQMEYIFTEWIGIYKAPGAVDRTYYAFLKDMHQRQVMANQ 1855
Query: 1001 DMTDRFFRRLTEVSVAHCLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILK----- 1055
+ + FFR ++SVA E NP FL ID AKL++ ++K
Sbjct: 1856 EDSALFFRLSIDISVAR-FEHESQNPS------GSLDEAFLYIDALAKLVVLLVKFQGEG 1908
Query: 1056 CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVAD 1115
PV+ S F + IL+V + + + +FN R +FRLF + L + S
Sbjct: 1909 TGPVKTSKSAYF--NSILSVLLLVLNHHQVMRGEAFNQRVFFRLFSSILCEYSMSGLQHS 1966
Query: 1116 GSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGW-PYIQRLLV 1174
+ +++ AN LQP P+F + W LVSHR FM +L + GW PY + + V
Sbjct: 1967 DQHQEMMFTLANKLLSLQPKYYPSFVYGWFSLVSHRFFMSSMLNMPDRAGWGPYCEIMQV 2026
Query: 1175 NLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMR 1234
L ++ L++ + + LY+G LR+LL+L HDFPEF+ + HF FC+VIP C Q+R
Sbjct: 2027 QL-SYIGEQLKSTTMTLVTMDLYRGMLRILLILHHDFPEFVAENHFQFCNVIPAHCAQLR 2085
Query: 1235 NIILSAFPRNM-RLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTG 1293
N++LSA+P + +LPDP LK++ L E+R+ PRI + L ++ +D+ L++
Sbjct: 2086 NLVLSAYPSSFQKLPDPFREGLKVERLEEMREAPRIAGDTAGPLLRAGIKNVIDNALQSN 2145
Query: 1294 QPGSSFLSELKQKLLLPPSEAAS---AGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQS 1350
S + +++ + S+ + A N+ L+N+L LYVG A+ S +S
Sbjct: 2146 NVSDSVIQQIRDAVYDTESKESGLFHAPININLLLVNALALYVGQGAV-------SVNES 2198
Query: 1351 TGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYL- 1409
GN + AF SA + + L + L E RY L+A ANQLRYPN+HT++FSF +L L
Sbjct: 2199 KGNTRA--AFESSAHSALLEKLAKILRPEARYYLLSAMANQLRYPNSHTYFFSFAILRLF 2256
Query: 1410 ---YAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPE 1466
Y E ++ I++QI RVL ERLIV+RPHPWGL+IT EL++N Y F++ FI+ APE
Sbjct: 2257 GTDYTEQDESDIRQQIIRVLLERLIVHRPHPWGLIITLQELLQNSSYAFFHLPFIQAAPE 2316
Query: 1467 I 1467
+
Sbjct: 2317 L 2317
Score = 539 (194.8 bits), Expect = 1.8e-164, Sum P(4) = 1.8e-164
Identities = 102/226 (45%), Positives = 150/226 (66%)
Query: 43 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYL 102
P EVQDKI F++NN+S N++ K ++ T++LK+ ++ WFA Y+V +RA ++PNF LYL
Sbjct: 1059 PDEEVQDKILFVLNNVSEQNIDEKLRDLTDVLKDPHHQWFASYLVEERAKLQPNFQQLYL 1118
Query: 103 KFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVL 162
LD+++ K L E+++ TY + LL SE SS ER LKNLGSWLG LTI +++ +
Sbjct: 1119 DLLDRIDDKILWVEVLRETYASTSKLLNSEATLGSSTERGHLKNLGSWLGSLTIAKDKPI 1178
Query: 163 RAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSM 222
+ + I K L++EAY+ + VIPFT K+L S ++PPNPW M I+ LL E+Y
Sbjct: 1179 KHKHIWFKGLLLEAYDSQRLTIVIPFTCKVLVQATKSTVFKPPNPWLMDIIALLMELYHF 1238
Query: 223 PNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSN 268
LK+NLKF+IEVL K+L +D K I P+ +++DR IE + +N
Sbjct: 1239 AELKLNLKFEIEVLCKDLEIDHKAIEPSVIIRDRSTTIEESLSTAN 1284
Score = 365 (133.5 bits), Expect = 1.8e-164, Sum P(4) = 1.8e-164
Identities = 94/272 (34%), Positives = 155/272 (56%)
Query: 329 DEKLAALGISDQLPSAQGLFQASQSQS----PFSVSQLSTPIPNIGTHVIINQKLTALGL 384
+E L+ I + L + + + S SQS S + + + +P++ +++ +++
Sbjct: 1277 EESLSTANIPEGLEAFEDMALTSISQSIRNERLSPAAILSTLPSLDKILVLPPSASSMVD 1336
Query: 385 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV 444
+++V A++RAI EI++ +V+RSV+IA+ +T +LV KD+AME DE + +AA MV
Sbjct: 1337 SNVLRQIVHSAVERAIAEIITPVVERSVTIASISTVQLVSKDFAMELDEEKFRHAAANMV 1396
Query: 445 ASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQA 504
LAGSLA VTCKEPL+ S+++ +R Q + + E + + NDNLD C ++E+A
Sbjct: 1397 RQLAGSLALVTCKEPLKVSMTNYIRMIQQEYS-DQPMPEGLILMCVNDNLDAACGIVEKA 1455
Query: 505 ATDKAIQTIDGEIAQQLSLRRKHREGVGSS-FFDPNIYAQGSMGVPEALRPKPGHLSVSQ 563
A +K++ I+ I QL RR+HR S F DP++ G + +PE R PG L+ Q
Sbjct: 1456 AEEKSLPEIEKVIESQLEARRRHRAARPSEPFIDPSMTRWG-LFIPEPYRQTPGGLNKEQ 1514
Query: 564 QRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSG 595
+YE+F R Q + +HA + T SG
Sbjct: 1515 LAIYEEFAR---QARGPGTTHAQNVS--TDSG 1541
Score = 140 (54.3 bits), Expect = 1.8e-164, Sum P(4) = 1.8e-164
Identities = 61/257 (23%), Positives = 113/257 (43%)
Query: 709 SSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQ------GVISEVPEIILRCISR 762
SS L L+T++ D+ + L N A E V+ V+ E + + ++
Sbjct: 1589 SSQLNGFLETQNPRDRVESLVSDLQQAARN-ATEEHVKDLGRDSAVLQEYNQALRSIVAS 1647
Query: 763 ---DEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYS--DE 817
+E A A K LY + L + +LA + D+ LV + +W + + D+
Sbjct: 1648 PNGEEVARLTALKACTSLYSQTKSTLEIEVLVHLLAKLCDMSALVARY--TWTVLAEVDD 1705
Query: 818 ERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLL-QTLVTDESRVVI 876
E FN +T+ LI + LL++ ++ +++LI +N AA + L+ Q L +E +
Sbjct: 1706 EHMFNVPVTVALIDAGLLDIRRVDMILSRLILQ-KNAAALDVLAELMDQILFNEEPSALR 1764
Query: 877 SELHNLVDALAKLAAKPGSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAY 936
S+ ++A++K A+ +++I+ +R+ DKAR +D+ Y
Sbjct: 1765 SDFSGSLEAMSKWLAEDSGLARAKEIIKKLRDSGIPEVVNPLLS----DKARSKRDQMEY 1820
Query: 937 SHTTANREDYNIPESVD 953
T Y P +VD
Sbjct: 1821 IFTEWIGI-YKAPGAVD 1836
Score = 76 (31.8 bits), Expect = 9.7e-83, Sum P(3) = 9.7e-83
Identities = 35/100 (35%), Positives = 46/100 (46%)
Query: 547 GVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQG--SHAMSAGSLTSSGDAAQASAYG 604
GVP PG + S Q + LP Q+ SS +H S+GS +S + A G
Sbjct: 99 GVPSPAST-PGPFA-SYQSGSQQPQSLPSQSLSSPKIRAHTPSSGSHLASAAGSVAGGGG 156
Query: 605 LAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGF 644
GG G G SS G+T F S + SGTT ++ GF
Sbjct: 157 SGGGGGGTG--SSRGAT-F------SPLLSGTTVNSPTGF 187
Score = 65 (27.9 bits), Expect = 1.4e-81, Sum P(3) = 1.4e-81
Identities = 42/182 (23%), Positives = 76/182 (41%)
Query: 576 QNQSSQGSHAMSAGS-LTSSGDAAQASAYGLAGGQGNQGYSSSAGS-TGFDAVSR-PSDV 632
Q QS+ +S S LTSS A +S+ G G+G +S+ G + + S+ P +
Sbjct: 64 QPQSNSPGPGVSTSSPLTSSFSAVLSSSRGHPLGRGVPSPASTPGPFASYQSGSQQPQSL 123
Query: 633 ASGTTESTSA-GFLSTSLVHIGAADGGILHNSES--------ESVNAAFTPAATELYAAD 683
S + S +S H+ +A G + S S A F+P +
Sbjct: 124 PSQSLSSPKIRAHTPSSGSHLASAAGSVAGGGGSGGGGGGTGSSRGATFSPLLSGTTVNS 183
Query: 684 STE-PVKEPGA-SSQSLPSTAAPERIGSS-ILEPSLQTRDALDKYHIVAQKLDALIGNDA 740
T P +PG+ ++ S+ A I +L S+ ++ +K+ A ++ L+ ++
Sbjct: 184 PTGFPPDKPGSVAAHGSQSSLAKISIAQVFLLLDSITEKEGREKWETKAAQIHKLVESNG 243
Query: 741 RE 742
E
Sbjct: 244 ME 245
Score = 50 (22.7 bits), Expect = 5.2e-80, Sum P(3) = 5.2e-80
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 303 PNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLP-SAQGLFQASQS--QSPFSV 359
P S P +S ++PL S ++ + LG P S G F + QS Q P S+
Sbjct: 65 PQSNSPGPGVST-SSPLTSSFSAVLSSSRGHPLGRGVPSPASTPGPFASYQSGSQQPQSL 123
Query: 360 SQLSTPIPNIGTH 372
S P I H
Sbjct: 124 PSQSLSSPKIRAH 136
Score = 48 (22.0 bits), Expect = 9.5e-122, Sum P(3) = 9.5e-122
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 401 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAA-HLMVASLAGS-LAHVTCKE 458
++ V +V A T+E V KD +S + YN A +VAS G +A +T +
Sbjct: 1602 RDRVESLVSDLQQAARNATEEHV-KDLGRDSAVLQEYNQALRSIVASPNGEEVARLTALK 1660
Query: 459 PLRGSISSQLRNSLQ 473
S+ SQ +++L+
Sbjct: 1661 ACT-SLYSQTKSTLE 1674
Score = 44 (20.5 bits), Expect = 9.3e-46, Sum P(2) = 9.3e-46
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 1298 SFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSL 1357
S L L + L+LPPS ++ + +++S V +AI ++ T T + S
Sbjct: 1316 STLPSLDKILVLPPSASSMVDSNVLRQIVHSAV----ERAIAEIITPVVERSVTIASIS- 1370
Query: 1358 TAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLR 1393
T LVS + +LD E F +AAAN +R
Sbjct: 1371 TVQLVS------KDFAMELDEEK---FRHAAANMVR 1397
Score = 41 (19.5 bits), Expect = 3.7e-112, Sum P(4) = 3.7e-112
Identities = 28/106 (26%), Positives = 39/106 (36%)
Query: 245 KDITPTSL-LKDRKREIEGNPDFSNKDVGASQPQ-LVPEVKPAIVSPLGHVDLPLDVASP 302
+ +TP + L + G P ++ G S L + S GH L V SP
Sbjct: 45 RGLTPLATNLSNPSVSGRGQPQSNSPGPGVSTSSPLTSSFSAVLSSSRGH-PLGRGVPSP 103
Query: 303 PNSGGP-THLLSQYAAPLRLSSGTLMEDEKLAALGIS-DQLPSAQG 346
++ GP S P L S +L + A S L SA G
Sbjct: 104 ASTPGPFASYQSGSQQPQSLPSQSLSSPKIRAHTPSSGSHLASAAG 149
Score = 40 (19.1 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 448 AGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQ 484
A +A T LR I + + N+LQ ++ +++Q
Sbjct: 2118 APRIAGDTAGPLLRAGIKNVIDNALQSNNVSDSVIQQ 2154
Score = 39 (18.8 bits), Expect = 8.5e-121, Sum P(3) = 8.5e-121
Identities = 36/209 (17%), Positives = 79/209 (37%)
Query: 782 SNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGL----IRSELLNL 837
SN L H A+ AI ++ VV+ + S + ++D M L R N+
Sbjct: 1337 SNVLRQIVHSAVERAIAEIITPVVERSVTIASISTVQL-VSKDFAMELDEEKFRHAAANM 1395
Query: 838 AEYNVHMAKLIDGGRN-KAATEFAISLLQTLVTDESR---VVISELHNLVDALAKLAAKP 893
L+ K + I ++Q +D+ +++ +++ +DA + K
Sbjct: 1396 VRQLAGSLALVTCKEPLKVSMTNYIRMIQQEYSDQPMPEGLILMCVNDNLDAACGIVEKA 1455
Query: 894 GSPESLQQLIEIVRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTANREDYNIPESVD 953
+SL ++ +++ + + R ++ + + + R IPE
Sbjct: 1456 AEEKSLPEIEKVIESQLEARR-----------RHRAARPSEPFIDPSMTRWGLFIPEPYR 1504
Query: 954 PDPVGFPEQVSMLFAEWYQICELPGSNDA 982
P G ++ ++ E+ + PG+ A
Sbjct: 1505 QTPGGLNKEQLAIYEEFARQARGPGTTHA 1533
Score = 38 (18.4 bits), Expect = 9.4e-79, Sum P(3) = 9.4e-79
Identities = 25/80 (31%), Positives = 36/80 (45%)
Query: 627 SRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTE 686
S S +ASGT +S+S + G S+S SV TP AT L + S
Sbjct: 9 SSQSSIASGTDKSSSTRPTRSQQSPWGPPV------SQS-SVRRGLTPLATNL-SNPSVS 60
Query: 687 PVKEPGASSQSLP--STAAP 704
+P ++S P ST++P
Sbjct: 61 GRGQPQSNSPG-PGVSTSSP 79
Score = 37 (18.1 bits), Expect = 1.4e-120, Sum P(3) = 1.4e-120
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 308 PTHLLSQYAAPLRLSSGTLMEDEKLA 333
P+ L S ++ L S L ED LA
Sbjct: 1760 PSALRSDFSGSLEAMSKWLAEDSGLA 1785
>RGD|1308009 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005778 "peroxisomal
membrane" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
RGD:1308009 GO:GO:0005778 GO:GO:0000932 InterPro:IPR007196
Pfam:PF04054 UniGene:Rn.56498 EMBL:BC086325 IPI:IPI00359049
STRING:Q5RK32 PRIDE:Q5RK32 UCSC:RGD:1308009 HOVERGEN:HBG106203
InParanoid:Q5RK32 ArrayExpress:Q5RK32 Genevestigator:Q5RK32
Uniprot:Q5RK32
Length = 455
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 251/448 (56%), Positives = 320/448 (71%)
Query: 1043 IDIYAKLMLSILKCCPVEQGS-SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFI 1101
+D + +L+ ++K + +KI LL+K+L + V +L+D + +++ F PY R+FI
Sbjct: 15 LDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFI 74
Query: 1102 NWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN 1161
LL++++ + V + NFQ L+AF N FH+L+P K P F +AWLEL+SHR F+ ++L
Sbjct: 75 MLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHT 134
Query: 1162 GQ-KGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 1220
Q KGWP +LL++L ++L PFLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+
Sbjct: 135 PQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHY 194
Query: 1221 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 1280
FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L EI PRI + +
Sbjct: 195 GFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PP 253
Query: 1281 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ 1340
Q + D+D YLKT P +FLS+L+ L + + G RYN+ LIN+LVLYVG QAI
Sbjct: 254 QFKKDLDSYLKTRSP-VTFLSDLRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-- 306
Query: 1341 LQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTH 1400
+H + G+ S++ SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTH
Sbjct: 307 -----AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH 361
Query: 1401 YFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSF 1460
YFS +LYL+AEAN E IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F
Sbjct: 362 YFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEF 421
Query: 1461 IRCAPEIEKLFESVARSCGGLKPVDDSM 1488
+ CAPEIEKLF+SVA+ C G K M
Sbjct: 422 VHCAPEIEKLFQSVAQCCMGQKQAQQVM 449
>SGD|S000000689 [details] [associations]
symbol:CDC39 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000749
"response to pheromone involved in conjugation with cellular
fusion" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0030015 "CCR4-NOT core
complex" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA;IPI] [GO:0007124 "pseudohyphal growth" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IGI;IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IPI]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051726
"regulation of cell cycle" evidence=IMP] SGD:S000000689
GO:GO:0005634 GO:GO:0005737 EMBL:X59720 EMBL:BK006937 GO:GO:0000122
GO:GO:0051726 GO:GO:0006368 GO:GO:0007124 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 PDB:4B8C PDBsum:4B8C eggNOG:COG5103
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 GeneTree:ENSGT00390000014869 GO:GO:0000749 EMBL:X70151
PIR:S28417 RefSeq:NP_010017.2 PDB:4B89 PDB:4B8A PDB:4B8B
PDBsum:4B89 PDBsum:4B8A PDBsum:4B8B ProteinModelPortal:P25655
DIP:DIP-1202N IntAct:P25655 MINT:MINT-383459 STRING:P25655
PaxDb:P25655 PeptideAtlas:P25655 EnsemblFungi:YCR093W GeneID:850455
KEGG:sce:YCR093W HOGENOM:HOG000057131 OMA:VIQEQIN OrthoDB:EOG43XZBJ
NextBio:966081 Genevestigator:P25655 GermOnline:YCR093W
Uniprot:P25655
Length = 2108
Score = 635 (228.6 bits), Expect = 8.7e-124, Sum P(4) = 8.7e-124
Identities = 164/538 (30%), Positives = 283/538 (52%)
Query: 961 EQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLS 1020
E++ ++F EW ++ + +ND T ++ QL + G++ D F + E+SV+
Sbjct: 1570 EKLYLVFTEWVKLLQRVENNDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKE 1629
Query: 1021 SEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFI 1080
S+ P F+AID L++ +L + + + ++ + I +V V
Sbjct: 1630 SD---P---------TDEVFIAIDALGSLIIKLLILQGFKDDTRRDYI-NAIFSVIVLVF 1676
Query: 1081 LKDAEEKKASFNPRPYFRLFINWLLDMSSLDP-----VADGSNFQIL----SAFANAF-- 1129
KD ++ +FN RPYFRLF N L + +++ ++D S Q L S F N F
Sbjct: 1677 AKDHSQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSG 1736
Query: 1130 --HVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNA 1187
H LQP P FSFAW+ L+SHR +P +L + GW + L+++L +FL+ +
Sbjct: 1737 YLHALQPFAFPGFSFAWVTLLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKH 1796
Query: 1188 ELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRL 1247
+ V +YKGTLRV+L + +D P FL + H+ + +PP+ Q++N+ILSA P+NM +
Sbjct: 1797 AVSDAVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTV 1856
Query: 1248 PDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKL 1307
P+P +L ++ +P ++ P +F D + ++ VD+YL+ P +S L + +
Sbjct: 1857 PNPYDVDLNMEDIPACKELPEVF--FDPVIDLHSLKKPVDNYLRI--PSNSLLRTILSAI 1912
Query: 1308 LLPPSEAASAGTRYNV-----PLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 1362
+ G Y+ LI ++VL+VG++A + + +S+A +S T
Sbjct: 1913 YKDTYDIKK-GVGYDFLSVDSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTL--- 1968
Query: 1363 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA--EAN-QEI-I 1418
+F LIQ+ E +Y + + QLRYPN HT++FSFVL+ ++ E N Q++ +
Sbjct: 1969 -----LFN-LIQNGSIEMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEV 2022
Query: 1419 QEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVAR 1476
QE I R +R+IVN+PH WG+ + F +LI N N + F++ PEI+ + + + +
Sbjct: 2023 QEIILRNFLKRIIVNKPHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVK 2080
Score = 397 (144.8 bits), Expect = 8.7e-124, Sum P(4) = 8.7e-124
Identities = 75/213 (35%), Positives = 128/213 (60%)
Query: 41 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 100
E +V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDL
Sbjct: 779 EGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDL 838
Query: 101 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 160
Y K + + S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+
Sbjct: 839 YSKVIVAMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNK 896
Query: 161 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 220
++ + I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+
Sbjct: 897 PIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELN 956
Query: 221 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL 253
N K++L F++EVL K+ + K + P++ +
Sbjct: 957 EKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 266 (98.7 bits), Expect = 8.7e-124, Sum P(4) = 8.7e-124
Identities = 62/187 (33%), Positives = 106/187 (56%)
Query: 385 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV 444
H +RV +A+ ++++EI+ +V++S IA TT +++LKD+A E DE+++ AA +MV
Sbjct: 1085 HPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTAAIIMV 1144
Query: 445 ASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQA 504
LA SLA T EPL+ I S +++ L S + + N+N+ + +IE+A
Sbjct: 1145 RHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALVLIEKA 1204
Query: 505 ATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQ 563
+ DK+ Q + ++ Q +++RR H+E F N S+ +PE L K ++ Q
Sbjct: 1205 SMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPY-SLSLPEPLGLKNTGVTPQQ 1263
Query: 564 QRVYEDF 570
RVYE+F
Sbjct: 1264 FRVYEEF 1270
Score = 129 (50.5 bits), Expect = 8.7e-124, Sum P(4) = 8.7e-124
Identities = 38/164 (23%), Positives = 82/164 (50%)
Query: 744 EVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL 803
+++ +I ++ I + +D+ AL V+Q V L+ + + L +L + + +
Sbjct: 1395 QIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLSLV 1454
Query: 804 VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEY-NVHMAKLIDGGRNKA--ATEFA 860
K++ W++Y+ + RKFN + L+ L++ E NV L+ +NK +TEFA
Sbjct: 1455 ARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELDNV----LVTAMKNKMENSTEFA 1510
Query: 861 ISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIE 904
+ L+Q V + +++ + + L LA+ E++++ I+
Sbjct: 1511 MKLIQNTVLSDDPILMRM--DFIKTLEHLASS--EDENVKKFIK 1550
Score = 49 (22.3 bits), Expect = 2.5e-87, Sum P(4) = 2.5e-87
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 102 LKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERS-------LLKNLGSWLGKL 154
LK L ++N KA N ++ T+E +VLL S + + S + S +++ L LG +
Sbjct: 949 LKLLIELNEKA-NWKL-SLTFE-VEVLLKSFNLTTKSLKPSNFINTPEVIETLSGALGSI 1005
Query: 155 TIGRNQVLRAREIDPKSLIIEAYEKGLMI 183
T+ + Q + R+I ++++ +++ ++I
Sbjct: 1006 TLEQQQTEQQRQI----ILMQQHQQQMLI 1030
Score = 46 (21.3 bits), Expect = 1.0e-100, Sum P(4) = 1.0e-100
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 342 PSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIK 401
P +G+ QS +P +S S+P + T IN+ + G+ L + +MD++ +
Sbjct: 1159 PLKEGIRSTMQSLAPNLMSLSSSPAEELDT--AINENI---GIALVL--IEKASMDKSTQ 1211
Query: 402 EIVSGIVQ 409
++ ++Q
Sbjct: 1212 DLADQLMQ 1219
Score = 41 (19.5 bits), Expect = 6.9e-64, Sum P(3) = 6.9e-64
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 644 FLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGAS 694
FL T+ + + +LH+ E ES+N +E+ + S +P S
Sbjct: 173 FLQTTPETLESNLRDLLHSLEGESLNDLLALLLSEILSPGSQNLQNDPTRS 223
Score = 41 (19.5 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 160 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILE 194
Q+ A+ + + +++E EK IAV+ T IL+
Sbjct: 1093 QMALAKSV--REILLEVVEKSSGIAVVTTTKIILK 1125
Score = 39 (18.8 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 24/146 (16%), Positives = 62/146 (42%)
Query: 392 VPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK---DYAMESDETRIYNAAHLMVASLA 448
+ +A+++ IK + + + E+V+ + E++I+ + +
Sbjct: 890 ITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGIL 949
Query: 449 GSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLD-----LGCAVIEQ 503
L + K + S++ ++ L+ + ++ L+ + + T + ++ LG +EQ
Sbjct: 950 KLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEVIETLSGALGSITLEQ 1009
Query: 504 AATDKAIQTIDGEIAQQLSLRRKHRE 529
T++ Q I + QQ L + R+
Sbjct: 1010 QQTEQQRQIILMQQHQQQMLIYQQRQ 1035
Score = 37 (18.1 bits), Expect = 5.4e-85, Sum P(5) = 5.4e-85
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 361 QLSTPIPNIGTHVIINQKLTALGLHLHFQR 390
++S IPN ++ + +L L L QR
Sbjct: 331 KVSETIPNTKQSLLYLLSIASLNLELFLQR 360
Score = 37 (18.1 bits), Expect = 5.4e-85, Sum P(5) = 5.4e-85
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 204 PPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK-NLGVDM 244
P P T ++ L A ++ P + D +V+FK +L + +
Sbjct: 270 PLMPTTASLSCLFAALHDGPVIDEFFSCDWKVIFKLDLAIQL 311
>CGD|CAL0001252 [details] [associations]
symbol:CDC39 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0007124 "pseudohyphal
growth" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0001252 GO:GO:0071216
GO:GO:0036180 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000168
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 RefSeq:XP_712097.1 ProteinModelPortal:Q59R01
STRING:Q59R01 GeneID:3646278 KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 476 (172.6 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 113/312 (36%), Positives = 173/312 (55%)
Query: 1186 NAELGVPV-RFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN 1244
N++ G V YK R+ + +LHDFPEFL + H+ IP IQ+RNI+LSA P++
Sbjct: 1718 NSQQGPEVINVTYKAINRIFIGILHDFPEFLVECHYQLVTSIPRGYIQLRNIVLSATPKD 1777
Query: 1245 MRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELK 1304
+ +PDP T LK++ LPEI + P +F + L ++ V+++L+ PG + +
Sbjct: 1778 IHVPDPFTQGLKVERLPEINESPVVFYKPIEDLSKVGLKKPVENFLRIPAPG--LMRTIY 1835
Query: 1305 QKLLL-PPSEAASAG----TRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTA 1359
L L P E G +N+ LIN+LVL+VG+ ++ R + + SS A
Sbjct: 1836 NGLKLNQPKEVNELGYEETINFNIKLINALVLHVGISSVAD---RLPNNRGFNTKSSQVA 1892
Query: 1360 FLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAE------- 1412
LV L+ +TE +Y +NA ANQLRYPN+HTH+F ++L+ ++
Sbjct: 1893 LLVD--------LMNYGNTEFKYHLINAIANQLRYPNSHTHWFIGIILHFFSNNNIWNSN 1944
Query: 1413 ANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIR-CAPEIEKLF 1471
N+ ++QE ITRVL ER I N+PHPWGL I F EL+KN Y F+ F++ E++ +F
Sbjct: 1945 GNKLVVQEIITRVLLERRISNKPHPWGLTILFTELVKNGDYGFFELPFVKDSVEEVKNIF 2004
Query: 1472 ESVARSCGGLKP 1483
++ + G P
Sbjct: 2005 NVLSINVKGSTP 2016
Score = 457 (165.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 136/512 (26%), Positives = 233/512 (45%)
Query: 66 KAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENC 125
+ E E+L E Y+ WF+ Y+V RA EPN H+LY K + + + I+ + +
Sbjct: 675 RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEV 734
Query: 126 KVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAV 185
++ + K S ER+ LKNLG+WLG++T+ ++ LR I K L++EAY+ + +
Sbjct: 735 DYIIRN--FKDSRSERNQLKNLGAWLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPLI 792
Query: 186 IPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 245
+PF KIL+ Q S ++PPNPW + ++ +LAE+Y +LK+ LKF+IEVL + + +K
Sbjct: 793 LPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELYECADLKLQLKFEIEVLLNSFNMKIK 852
Query: 246 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASP-PN 304
DI ++++++ E P + G S Q V L L ++ +P P
Sbjct: 853 DIEQSTIIRNHNPE----PTALARMFGISS-QSVNLANEMTRLSLEGSQLGNNIQAPFPQ 907
Query: 305 SGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST 364
+ + P L + ++ QLP Q L Q P Q +
Sbjct: 908 QIIESKQFPGISQPQM--QNVLQQQQQQQQQQQQQQLPPQQQL----PGQLP--PQQQAE 959
Query: 365 PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVL 424
P + +I + H + +R ++ RA++E I + V TTK L+
Sbjct: 960 PALDTSFSTLIGNSIFTQ--HANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALIT 1017
Query: 425 KDYAMESDETRIYNAAHLMVASLAGSLAHVTCK------EPLRGSISSQLRNSLQGLTIA 478
KD+A E D + N+ + SL S A V+C E + ++ L N+ + +A
Sbjct: 1018 KDFATERDIEKFRNSYQKLALSL--SHAMVSCNGRKALVETIEATMLQLLGNNPNEVPLA 1075
Query: 479 SELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDP 538
L A+Q N+ L +++ + + I+ + ++ LR H + F
Sbjct: 1076 E--LNSAIQA----NVGLCVDIVDVLVGESILDIIEARMQTEVFLREHHTATAPNEPFIA 1129
Query: 539 NIYAQGSMGVPEALRPKPGHLSVSQQRVYEDF 570
+ S+ +P L LS Q ++YE F
Sbjct: 1130 EGASDYSLRLPNPLGLALTGLSAQQLKIYEHF 1161
Score = 410 (149.4 bits), Expect = 1.8e-109, Sum P(4) = 1.8e-109
Identities = 77/219 (35%), Positives = 132/219 (60%)
Query: 41 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 100
E P ++DK+ F +NN++ N+ + E E+L E Y+ WF+ Y+V RA EPN H+L
Sbjct: 652 EEPPESIRDKLLFSVNNMTGENL--RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHEL 709
Query: 101 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 160
Y K + + + I+ + + ++ + K S ER+ LKNLG+WLG++T+ ++
Sbjct: 710 YSKLVKSLANPIFFEYILNVSLKEVDYIIRN--FKDSRSERNQLKNLGAWLGRITLANDK 767
Query: 161 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 220
LR I K L++EAY+ + ++PF KIL+ Q S ++PPNPW + ++ +LAE+Y
Sbjct: 768 PLRRDYIALKFLLVEAYDFNSLPLILPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELY 827
Query: 221 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 259
+LK+ LKF+IEVL + + +KDI ++++++ E
Sbjct: 828 ECADLKLQLKFEIEVLLNSFNMKIKDIEQSTIIRNHNPE 866
Score = 253 (94.1 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 69/234 (29%), Positives = 116/234 (49%)
Query: 962 QVSMLFAEWYQICELPGSNDAACT---RYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHC 1018
Q+ +FAEW ++ L +DA +V L Q+G+L + FF+ E+S+
Sbjct: 1458 QLGYIFAEWVRL--LTHGDDATNELQIEFVKGLIQSGILNNPEYVKTFFKAAIEISITSF 1515
Query: 1019 LSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVK 1078
+ + T + A+D A L++ I+ VE I L K+L + +
Sbjct: 1516 ATEHELRSRTQHET-------YFAVDTLAMLIVRIVLL--VEDSKQAIDYLKKVLGIIIL 1566
Query: 1079 FILKDAEEKKASFNPRPYFRLFINWL---LDMSSLDP-VADGSNFQILSAFANAFHVLQP 1134
++ D E KA++N R YFR F + L D S LD V + + + F+ LQP
Sbjct: 1567 NLINDHETSKANWNERAYFRFFSSLLSTWCDASVLDEEVTVNLDVKFYNYLGELFNALQP 1626
Query: 1135 LKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAE 1188
+ +P F+FAW+ L+SHR ++PKLL +KG+ + +LL + L+F + + N +
Sbjct: 1627 IVLPGFTFAWISLISHRMYLPKLLELPERKGYATLVKLLSSALKFQQIYGNNKQ 1680
Score = 158 (60.7 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 53/233 (22%), Positives = 102/233 (43%)
Query: 674 PAATELYAADSTEPVKEPGASSQSLPST-AAPERIGSSILEPSLQTRDALDKYHIVAQKL 732
P +T + AA + P ++ S + + P+ I S + T + +V++
Sbjct: 1201 PVSTVVAAAPAPAPPQQQQQSKERIAQAQGVPDDIVSFEQLFTAITANCDKAVQLVSEVT 1260
Query: 733 DALIGNDAREAEVQGVISEVPEII-LRCISRDEAALAVAQKVFKGLYENASNN-LHFSAH 790
+ + + + +++ I I E L AQ L+ N + +
Sbjct: 1261 ETKLADLPPNHSIMAALTQALVIAQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIY 1320
Query: 791 LAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDG 850
+ IL + + K++ W+++S ++RKFN + + L++ +L+ + ++ + KLI
Sbjct: 1321 VVILDKLCEYSPSTAKDVIWWLVHSSDQRKFNMPVMLSLLKVQLIQPIKLDLSIGKLIKE 1380
Query: 851 GRNKAATEFAISLLQTLVT-DESRVVI--SELHNLVDALAKLAAKPGSPESLQ 900
N +FA SLL + T +E R + SE N +DAL+K A S E Q
Sbjct: 1381 TNNPVVVKFAASLLTNIFTSEEMRPIALRSEFANTLDALSKYQANDQSEEDRQ 1433
Score = 50 (22.7 bits), Expect = 4.7e-60, Sum P(4) = 4.7e-60
Identities = 22/97 (22%), Positives = 38/97 (39%)
Query: 846 KLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEI 905
KL+ N +S +Q ++T+ S+ LV AK A+P + E +L++
Sbjct: 661 KLLFSVNNMTGENLRLSEIQEVLTESYFAWFSDY--LVSDRAK--AEPNNHELYSKLVKS 716
Query: 906 VRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTAN 942
+ NP D R KD ++ + N
Sbjct: 717 LANPIFFEYILNVSLKEVDYIIRNFKDSRSERNQLKN 753
Score = 49 (22.3 bits), Expect = 4.7e-98, Sum P(4) = 4.7e-98
Identities = 25/107 (23%), Positives = 47/107 (43%)
Query: 784 NLHFSAHLAILAAIRD----VCKLVVKEL-TSWVIYSDEERKFNRDITMGLIRSELLNLA 838
NL + ++ A+R+ +C VV+ + T+ ++ RDI R+ LA
Sbjct: 980 NLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEK--FRNSYQKLA 1037
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDA 885
H A + GR ++LQ L + + V ++EL++ + A
Sbjct: 1038 LSLSH-AMVSCNGRKALVETIEATMLQLLGNNPNEVPLAELNSAIQA 1083
Score = 49 (22.3 bits), Expect = 4.7e-98, Sum P(4) = 4.7e-98
Identities = 45/214 (21%), Positives = 85/214 (39%)
Query: 299 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 358
+ PP S G T +Q APL+ + + ++ + + P+ Q QS
Sbjct: 1169 IVPPPGSTGITQQQTQSLAPLQQQQQQQQQQQPVSTVVAAAPAPAPP----QQQQQSKER 1224
Query: 359 VSQLSTPIPNIGTHVIINQKLTALGLHLH--FQRVVPIAMDRAIK-----EIVSGIVQRS 411
++Q + +P+ V Q TA+ + Q V + + I++ + Q
Sbjct: 1225 IAQ-AQGVPD--DIVSFEQLFTAITANCDKAVQLVSEVTETKLADLPPNHSIMAALTQAL 1281
Query: 412 VSIATQTTK--ELVLK--DYAM-----ESDETRIYNAAHLMVASLAGSLAHVTCKEPLRG 462
V T K EL+LK YA+ ++ E + N ++++ + T K+ +
Sbjct: 1282 VIAQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIYVVILDKLCEYSPSTAKDVIWW 1341
Query: 463 SISSQLRNSLQGLTIASELLEQAVQLVTNDNLDL 496
+ S + + + LL+ VQL+ LDL
Sbjct: 1342 LVHSSDQRKFN-MPVMLSLLK--VQLIQPIKLDL 1372
Score = 46 (21.3 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 816 DEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 875
D + + GLI+S +LN EY K KAA E +I+ T SR
Sbjct: 1475 DATNELQIEFVKGLIQSGILNNPEY----VKTFF----KAAIEISITSFATEHELRSRTQ 1526
Query: 876 ISELHNLVDALAKLAAK 892
E + VD LA L +
Sbjct: 1527 -HETYFAVDTLAMLIVR 1542
Score = 45 (20.9 bits), Expect = 2.7e-71, Sum P(4) = 2.7e-71
Identities = 35/148 (23%), Positives = 57/148 (38%)
Query: 307 GPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGL-----FQASQSQSPFSVSQ 361
GP +LL + P L D+ +A + +P +QGL F +S S +Q
Sbjct: 11 GPENLLPEKLLPSLLQIKPNEIDQGIALILAEILIPGSQGLSQGLTFASSLPGSNAKGAQ 70
Query: 362 LSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKE 421
L +I N + H+H Q + + R I+ V I Q S+ +
Sbjct: 71 LQACFKSIENSGKFNVNWYEVFNHVH-QYLFD-SSQRDIQPSVGSITQFLSSLDFKQEPI 128
Query: 422 LVLKDYAMESDETRIYNAAHLMVASLAG 449
+ +Y ++T +Y H AS G
Sbjct: 129 DIFLNYEWWFNKTLLY-ILHSSDASQGG 155
Score = 41 (19.5 bits), Expect = 9.7e-48, Sum P(3) = 9.7e-48
Identities = 33/139 (23%), Positives = 56/139 (40%)
Query: 1339 HQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYL---FLNAAAN-QLRY 1394
H+L++RT H ++ +L +V L + + Q +D + L LN + +
Sbjct: 1519 HELRSRTQH-ETYFAVDTLAMLIVRIVL-LVEDSKQAIDYLKKVLGIIILNLINDHETSK 1576
Query: 1395 PN-NHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 1453
N N YF F L + ++ E++T L V + G L ++ I P +
Sbjct: 1577 ANWNERAYFRFFSSLLSTWCDASVLDEEVT----VNLDVKFYNYLGELFNALQPIVLPGF 1632
Query: 1454 NFWNQSFIRCAPEIEKLFE 1472
F S I + KL E
Sbjct: 1633 TFAWISLISHRMYLPKLLE 1651
Score = 39 (18.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 1387 AAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRP 1435
A N ++YP + + L+ + ++ + +I V+ ++L P
Sbjct: 1284 AQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIYVVILDKLCEYSP 1332
>UNIPROTKB|Q59R01 [details] [associations]
symbol:CDC39 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Cdc39p" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
CGD:CAL0001252 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000168 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_712097.1
ProteinModelPortal:Q59R01 STRING:Q59R01 GeneID:3646278
KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 476 (172.6 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 113/312 (36%), Positives = 173/312 (55%)
Query: 1186 NAELGVPV-RFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN 1244
N++ G V YK R+ + +LHDFPEFL + H+ IP IQ+RNI+LSA P++
Sbjct: 1718 NSQQGPEVINVTYKAINRIFIGILHDFPEFLVECHYQLVTSIPRGYIQLRNIVLSATPKD 1777
Query: 1245 MRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELK 1304
+ +PDP T LK++ LPEI + P +F + L ++ V+++L+ PG + +
Sbjct: 1778 IHVPDPFTQGLKVERLPEINESPVVFYKPIEDLSKVGLKKPVENFLRIPAPG--LMRTIY 1835
Query: 1305 QKLLL-PPSEAASAG----TRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTA 1359
L L P E G +N+ LIN+LVL+VG+ ++ R + + SS A
Sbjct: 1836 NGLKLNQPKEVNELGYEETINFNIKLINALVLHVGISSVAD---RLPNNRGFNTKSSQVA 1892
Query: 1360 FLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAE------- 1412
LV L+ +TE +Y +NA ANQLRYPN+HTH+F ++L+ ++
Sbjct: 1893 LLVD--------LMNYGNTEFKYHLINAIANQLRYPNSHTHWFIGIILHFFSNNNIWNSN 1944
Query: 1413 ANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIR-CAPEIEKLF 1471
N+ ++QE ITRVL ER I N+PHPWGL I F EL+KN Y F+ F++ E++ +F
Sbjct: 1945 GNKLVVQEIITRVLLERRISNKPHPWGLTILFTELVKNGDYGFFELPFVKDSVEEVKNIF 2004
Query: 1472 ESVARSCGGLKP 1483
++ + G P
Sbjct: 2005 NVLSINVKGSTP 2016
Score = 457 (165.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 136/512 (26%), Positives = 233/512 (45%)
Query: 66 KAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENC 125
+ E E+L E Y+ WF+ Y+V RA EPN H+LY K + + + I+ + +
Sbjct: 675 RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEV 734
Query: 126 KVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAV 185
++ + K S ER+ LKNLG+WLG++T+ ++ LR I K L++EAY+ + +
Sbjct: 735 DYIIRN--FKDSRSERNQLKNLGAWLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPLI 792
Query: 186 IPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 245
+PF KIL+ Q S ++PPNPW + ++ +LAE+Y +LK+ LKF+IEVL + + +K
Sbjct: 793 LPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELYECADLKLQLKFEIEVLLNSFNMKIK 852
Query: 246 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASP-PN 304
DI ++++++ E P + G S Q V L L ++ +P P
Sbjct: 853 DIEQSTIIRNHNPE----PTALARMFGISS-QSVNLANEMTRLSLEGSQLGNNIQAPFPQ 907
Query: 305 SGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST 364
+ + P L + ++ QLP Q L Q P Q +
Sbjct: 908 QIIESKQFPGISQPQM--QNVLQQQQQQQQQQQQQQLPPQQQL----PGQLP--PQQQAE 959
Query: 365 PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVL 424
P + +I + H + +R ++ RA++E I + V TTK L+
Sbjct: 960 PALDTSFSTLIGNSIFTQ--HANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALIT 1017
Query: 425 KDYAMESDETRIYNAAHLMVASLAGSLAHVTCK------EPLRGSISSQLRNSLQGLTIA 478
KD+A E D + N+ + SL S A V+C E + ++ L N+ + +A
Sbjct: 1018 KDFATERDIEKFRNSYQKLALSL--SHAMVSCNGRKALVETIEATMLQLLGNNPNEVPLA 1075
Query: 479 SELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDP 538
L A+Q N+ L +++ + + I+ + ++ LR H + F
Sbjct: 1076 E--LNSAIQA----NVGLCVDIVDVLVGESILDIIEARMQTEVFLREHHTATAPNEPFIA 1129
Query: 539 NIYAQGSMGVPEALRPKPGHLSVSQQRVYEDF 570
+ S+ +P L LS Q ++YE F
Sbjct: 1130 EGASDYSLRLPNPLGLALTGLSAQQLKIYEHF 1161
Score = 410 (149.4 bits), Expect = 1.8e-109, Sum P(4) = 1.8e-109
Identities = 77/219 (35%), Positives = 132/219 (60%)
Query: 41 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 100
E P ++DK+ F +NN++ N+ + E E+L E Y+ WF+ Y+V RA EPN H+L
Sbjct: 652 EEPPESIRDKLLFSVNNMTGENL--RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHEL 709
Query: 101 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 160
Y K + + + I+ + + ++ + K S ER+ LKNLG+WLG++T+ ++
Sbjct: 710 YSKLVKSLANPIFFEYILNVSLKEVDYIIRN--FKDSRSERNQLKNLGAWLGRITLANDK 767
Query: 161 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 220
LR I K L++EAY+ + ++PF KIL+ Q S ++PPNPW + ++ +LAE+Y
Sbjct: 768 PLRRDYIALKFLLVEAYDFNSLPLILPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELY 827
Query: 221 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 259
+LK+ LKF+IEVL + + +KDI ++++++ E
Sbjct: 828 ECADLKLQLKFEIEVLLNSFNMKIKDIEQSTIIRNHNPE 866
Score = 253 (94.1 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 69/234 (29%), Positives = 116/234 (49%)
Query: 962 QVSMLFAEWYQICELPGSNDAACT---RYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHC 1018
Q+ +FAEW ++ L +DA +V L Q+G+L + FF+ E+S+
Sbjct: 1458 QLGYIFAEWVRL--LTHGDDATNELQIEFVKGLIQSGILNNPEYVKTFFKAAIEISITSF 1515
Query: 1019 LSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVK 1078
+ + T + A+D A L++ I+ VE I L K+L + +
Sbjct: 1516 ATEHELRSRTQHET-------YFAVDTLAMLIVRIVLL--VEDSKQAIDYLKKVLGIIIL 1566
Query: 1079 FILKDAEEKKASFNPRPYFRLFINWL---LDMSSLDP-VADGSNFQILSAFANAFHVLQP 1134
++ D E KA++N R YFR F + L D S LD V + + + F+ LQP
Sbjct: 1567 NLINDHETSKANWNERAYFRFFSSLLSTWCDASVLDEEVTVNLDVKFYNYLGELFNALQP 1626
Query: 1135 LKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAE 1188
+ +P F+FAW+ L+SHR ++PKLL +KG+ + +LL + L+F + + N +
Sbjct: 1627 IVLPGFTFAWISLISHRMYLPKLLELPERKGYATLVKLLSSALKFQQIYGNNKQ 1680
Score = 158 (60.7 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
Identities = 53/233 (22%), Positives = 102/233 (43%)
Query: 674 PAATELYAADSTEPVKEPGASSQSLPST-AAPERIGSSILEPSLQTRDALDKYHIVAQKL 732
P +T + AA + P ++ S + + P+ I S + T + +V++
Sbjct: 1201 PVSTVVAAAPAPAPPQQQQQSKERIAQAQGVPDDIVSFEQLFTAITANCDKAVQLVSEVT 1260
Query: 733 DALIGNDAREAEVQGVISEVPEII-LRCISRDEAALAVAQKVFKGLYENASNN-LHFSAH 790
+ + + + +++ I I E L AQ L+ N + +
Sbjct: 1261 ETKLADLPPNHSIMAALTQALVIAQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIY 1320
Query: 791 LAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDG 850
+ IL + + K++ W+++S ++RKFN + + L++ +L+ + ++ + KLI
Sbjct: 1321 VVILDKLCEYSPSTAKDVIWWLVHSSDQRKFNMPVMLSLLKVQLIQPIKLDLSIGKLIKE 1380
Query: 851 GRNKAATEFAISLLQTLVT-DESRVVI--SELHNLVDALAKLAAKPGSPESLQ 900
N +FA SLL + T +E R + SE N +DAL+K A S E Q
Sbjct: 1381 TNNPVVVKFAASLLTNIFTSEEMRPIALRSEFANTLDALSKYQANDQSEEDRQ 1433
Score = 50 (22.7 bits), Expect = 4.7e-60, Sum P(4) = 4.7e-60
Identities = 22/97 (22%), Positives = 38/97 (39%)
Query: 846 KLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEI 905
KL+ N +S +Q ++T+ S+ LV AK A+P + E +L++
Sbjct: 661 KLLFSVNNMTGENLRLSEIQEVLTESYFAWFSDY--LVSDRAK--AEPNNHELYSKLVKS 716
Query: 906 VRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTAN 942
+ NP D R KD ++ + N
Sbjct: 717 LANPIFFEYILNVSLKEVDYIIRNFKDSRSERNQLKN 753
Score = 49 (22.3 bits), Expect = 4.7e-98, Sum P(4) = 4.7e-98
Identities = 25/107 (23%), Positives = 47/107 (43%)
Query: 784 NLHFSAHLAILAAIRD----VCKLVVKEL-TSWVIYSDEERKFNRDITMGLIRSELLNLA 838
NL + ++ A+R+ +C VV+ + T+ ++ RDI R+ LA
Sbjct: 980 NLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEK--FRNSYQKLA 1037
Query: 839 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDA 885
H A + GR ++LQ L + + V ++EL++ + A
Sbjct: 1038 LSLSH-AMVSCNGRKALVETIEATMLQLLGNNPNEVPLAELNSAIQA 1083
Score = 49 (22.3 bits), Expect = 4.7e-98, Sum P(4) = 4.7e-98
Identities = 45/214 (21%), Positives = 85/214 (39%)
Query: 299 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 358
+ PP S G T +Q APL+ + + ++ + + P+ Q QS
Sbjct: 1169 IVPPPGSTGITQQQTQSLAPLQQQQQQQQQQQPVSTVVAAAPAPAPP----QQQQQSKER 1224
Query: 359 VSQLSTPIPNIGTHVIINQKLTALGLHLH--FQRVVPIAMDRAIK-----EIVSGIVQRS 411
++Q + +P+ V Q TA+ + Q V + + I++ + Q
Sbjct: 1225 IAQ-AQGVPD--DIVSFEQLFTAITANCDKAVQLVSEVTETKLADLPPNHSIMAALTQAL 1281
Query: 412 VSIATQTTK--ELVLK--DYAM-----ESDETRIYNAAHLMVASLAGSLAHVTCKEPLRG 462
V T K EL+LK YA+ ++ E + N ++++ + T K+ +
Sbjct: 1282 VIAQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIYVVILDKLCEYSPSTAKDVIWW 1341
Query: 463 SISSQLRNSLQGLTIASELLEQAVQLVTNDNLDL 496
+ S + + + LL+ VQL+ LDL
Sbjct: 1342 LVHSSDQRKFN-MPVMLSLLK--VQLIQPIKLDL 1372
Score = 46 (21.3 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 816 DEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 875
D + + GLI+S +LN EY K KAA E +I+ T SR
Sbjct: 1475 DATNELQIEFVKGLIQSGILNNPEY----VKTFF----KAAIEISITSFATEHELRSRTQ 1526
Query: 876 ISELHNLVDALAKLAAK 892
E + VD LA L +
Sbjct: 1527 -HETYFAVDTLAMLIVR 1542
Score = 45 (20.9 bits), Expect = 2.7e-71, Sum P(4) = 2.7e-71
Identities = 35/148 (23%), Positives = 57/148 (38%)
Query: 307 GPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGL-----FQASQSQSPFSVSQ 361
GP +LL + P L D+ +A + +P +QGL F +S S +Q
Sbjct: 11 GPENLLPEKLLPSLLQIKPNEIDQGIALILAEILIPGSQGLSQGLTFASSLPGSNAKGAQ 70
Query: 362 LSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKE 421
L +I N + H+H Q + + R I+ V I Q S+ +
Sbjct: 71 LQACFKSIENSGKFNVNWYEVFNHVH-QYLFD-SSQRDIQPSVGSITQFLSSLDFKQEPI 128
Query: 422 LVLKDYAMESDETRIYNAAHLMVASLAG 449
+ +Y ++T +Y H AS G
Sbjct: 129 DIFLNYEWWFNKTLLY-ILHSSDASQGG 155
Score = 41 (19.5 bits), Expect = 9.7e-48, Sum P(3) = 9.7e-48
Identities = 33/139 (23%), Positives = 56/139 (40%)
Query: 1339 HQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYL---FLNAAAN-QLRY 1394
H+L++RT H ++ +L +V L + + Q +D + L LN + +
Sbjct: 1519 HELRSRTQH-ETYFAVDTLAMLIVRIVL-LVEDSKQAIDYLKKVLGIIILNLINDHETSK 1576
Query: 1395 PN-NHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 1453
N N YF F L + ++ E++T L V + G L ++ I P +
Sbjct: 1577 ANWNERAYFRFFSSLLSTWCDASVLDEEVT----VNLDVKFYNYLGELFNALQPIVLPGF 1632
Query: 1454 NFWNQSFIRCAPEIEKLFE 1472
F S I + KL E
Sbjct: 1633 TFAWISLISHRMYLPKLLE 1651
Score = 39 (18.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 1387 AAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRP 1435
A N ++YP + + L+ + ++ + +I V+ ++L P
Sbjct: 1284 AQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIYVVILDKLCEYSP 1332
>POMBASE|SPAC20G8.06 [details] [associations]
symbol:not1 "CCR4-Not complex subunit Not1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IC] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
PomBase:SPAC20G8.06 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000289 GO:GO:0030015
GO:GO:0006354 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 PIR:T38128
RefSeq:NP_593323.1 ProteinModelPortal:P87112 STRING:P87112
EnsemblFungi:SPAC20G8.06.1 GeneID:2542001 KEGG:spo:SPAC20G8.06
OMA:ANIAGTR OrthoDB:EOG4SFDF0 NextBio:20803082 Uniprot:P87112
Length = 2100
Score = 654 (235.3 bits), Expect = 6.5e-105, Sum P(3) = 6.5e-105
Identities = 161/443 (36%), Positives = 241/443 (54%)
Query: 1040 FLAIDIYAKLMLSILKCCPVE-QG--SSKIFLLSKILTVTVKFILKDAEEKKASF-NPRP 1095
+ +D YA L+++++K +G SSK L KI+ + + + + A F + +
Sbjct: 1653 YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIG-VFAELHNSMAEFVHQKT 1711
Query: 1096 YFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMP 1155
+FRLF + L ++ V + I S F +QP PAF+FAWL L+SH +P
Sbjct: 1712 FFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLP 1771
Query: 1156 KLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFL 1215
K+L+ N K +L++ L+FL+ L++ + LY G LR++LVLLHDFP FL
Sbjct: 1772 KVLLVNNDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGFL 1829
Query: 1216 CDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDA 1275
+ + IP C+Q+RN++LSAFP ++ LPDP LK+ LPE+ P I + V A
Sbjct: 1830 ATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVSA 1889
Query: 1276 ALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGM 1335
+L D++ + +P +E+ KLLL + T+ N N +L +
Sbjct: 1890 SLEKFASALDLEACFSSSKP-----AEVA-KLLLEVYSSQDTPTKLN-EWANYFMLCLIR 1942
Query: 1336 QAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYP 1395
A TR S A+ S + V I T+ + D++ RY L A ANQLRYP
Sbjct: 1943 HA-----TRDSPAKQAPQFQSKSPECV-----IISTMNRSCDSKCRYFLLTAIANQLRYP 1992
Query: 1396 NNHTHYFSFVLLYLYAEAN---QEI-IQEQITRVLFERLIVNRPHPWGLLITFIELIKNP 1451
++HT+Y S LYL+ ++ QE+ I+EQ+T VL ER+I NRPHPWGLLITF EL+KN
Sbjct: 1993 SSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNE 2052
Query: 1452 RYNFWNQSFIRCAPEIEKLFESV 1474
YNFW +I+ EI +LF+S+
Sbjct: 2053 DYNFWKHPYIKRNDEICRLFDSL 2075
Score = 445 (161.7 bits), Expect = 6.5e-105, Sum P(3) = 6.5e-105
Identities = 135/487 (27%), Positives = 237/487 (48%)
Query: 39 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 92
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 93 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 152
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 153 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 212
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 213 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD---RKREIEGN-P-DFS 267
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++ +K ++E P D
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEKELPEDVL 1092
Query: 268 NKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSG--GPTHLLSQYAAPLRLSSGT 325
N + ++ + A S + D V P T L+ Q + L + S
Sbjct: 1093 NAEF-PDGTDVITQYIVAASSQITVTDAVAQVFGKPKPAIKNITQLIIQQSV-LEIISAV 1150
Query: 326 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLH 385
+ +AA+ + L +++ S+ + Q++ + V + L L ++
Sbjct: 1151 VRRSVGIAAI-TTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMIN 1209
Query: 386 LHFQRVVPIAMDR---AIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 442
+F+ + ++ A+ + + +V +++ +A+ E V + A+ + I H+
Sbjct: 1210 -NFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVI-ESVASETAIAEIDAEI---EHM 1264
Query: 443 MVASLAG--SLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTN-DNLDLGCA 499
+V + + ++ +P G+ + L N L ++SEL Q QL N D L L
Sbjct: 1265 IVERVRHRKTTPNLPFVDPA-GAANLHL-NLPSVLKLSSELTPQQFQLYENFDRLSLSTI 1322
Query: 500 VIEQAAT 506
+ + T
Sbjct: 1323 MSNNSFT 1329
Score = 445 (161.7 bits), Expect = 3.5e-82, Sum P(3) = 3.5e-82
Identities = 114/367 (31%), Positives = 184/367 (50%)
Query: 961 EQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFR-RLTEVSVAHCL 1019
+Q+ ++F W + +ND +V QLH+ G+L ++ +FFR L V VA
Sbjct: 1585 DQIIIVFVSWVHLLRNSATNDETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLE 1644
Query: 1020 SSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVE-QG--SSKIFLLSKILTVT 1076
++ V P + +D YA L+++++K +G SSK L KI+ +
Sbjct: 1645 AASVNAPD------------YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALI 1692
Query: 1077 VKFILKDAEEKKASF-NPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPL 1135
+ + + A F + + +FRLF + L ++ V + I S F +QP
Sbjct: 1693 IG-VFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPR 1751
Query: 1136 KVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRF 1195
PAF+FAWL L+SH +PK+L+ N K +L++ L+FL+ L++ +
Sbjct: 1752 SFPAFTFAWLSLISHSYLLPKVLLVNNDKINDLFSEILMSFLKFLD--LKDDIDKAQFKL 1809
Query: 1196 LYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNL 1255
LY G LR++LVLLHDFP FL + + IP C+Q+RN++LSAFP ++ LPDP L
Sbjct: 1810 LYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGL 1869
Query: 1256 KIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAA 1315
K+ LPE+ P I + V A+L D++ + +P +E+ KLLL +
Sbjct: 1870 KVGRLPEVTRAPLISNSVSASLEKFASALDLEACFSSSKP-----AEVA-KLLLEVYSSQ 1923
Query: 1316 SAGTRYN 1322
T+ N
Sbjct: 1924 DTPTKLN 1930
Score = 287 (106.1 bits), Expect = 2.6e-88, Sum P(3) = 2.6e-88
Identities = 73/214 (34%), Positives = 116/214 (54%)
Query: 389 QRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLA 448
+ + + + +++ EI+S +V+RSV IA TTK L+ KD+A ES+ +R+ AA M +LA
Sbjct: 1132 KNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLA 1191
Query: 449 GSLAHVTCKEPLRGSISSQLRN-SLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATD 507
G+LA VTC+EPL+ + + R +LQ + + QA+ + + NL + +VIE A++
Sbjct: 1192 GNLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASE 1251
Query: 508 KAIQTIDGEIAQQLSLRRKHREGVGS-SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRV 566
AI ID EI + R +HR+ + F DP A + +P L+ L+ Q ++
Sbjct: 1252 TAIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQL 1310
Query: 567 YEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQA 600
YE+F RL S S G T S D+ A
Sbjct: 1311 YENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDA 1344
Score = 96 (38.9 bits), Expect = 6.5e-105, Sum P(3) = 6.5e-105
Identities = 32/122 (26%), Positives = 63/122 (51%)
Query: 791 LAILAAIRD-VCKLVVKELTSWVIY---SDEERKFNRDITMGLIRSELLNLAEYNVHMAK 846
L + +AI + +C+ K + +Y S++ K N I + LIR +L E + H+A+
Sbjct: 1440 LEVFSAILEYICQASTKTAINVSLYWNFSNDLEKLNLPIILSLIRFGILTSGEVDYHVAR 1499
Query: 847 LIDGGRNKA-ATEFAISLLQTLVTDESRVVI-SELHNLVDALAKLAAK-PG-SPESLQQL 902
+ + T+FAI LL+T V E+ + + N + +L +++ G + ++ +QL
Sbjct: 1500 GVRSEQGSGPVTDFAIELLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQL 1559
Query: 903 IE 904
+E
Sbjct: 1560 VE 1561
>DICTYBASE|DDB_G0287399 [details] [associations]
symbol:DDB_G0287399 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0287399
GO:GO:0005576 EMBL:AAFI02000100 eggNOG:NOG12793 RefSeq:XP_637288.1
EnsemblProtists:DDB0187468 GeneID:8626120 KEGG:ddi:DDB_G0287399
OMA:ETINIFH Uniprot:Q54KD5
Length = 486
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 42/145 (28%), Positives = 73/145 (50%)
Query: 579 SSQGSHA-MSAGSLTSSGDAAQASAYGLAGGQGNQGYSS--SAGST-----GFDAVSRPS 630
SS GS S+G+++SSG A+ ++ G G + G SS S+GS+ G + S+
Sbjct: 52 SSSGSGTGQSSGTVSSSGSASNNTSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSG 111
Query: 631 DVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKE 690
+ +SG++ S S+G S + G + G + S+S NA+ P++ ++ S++
Sbjct: 112 NASSGSSSSGSSGSQSGN-ASSGTSSGSSSSSGSSQSGNASSGPSSGTTSSSGSSQSESS 170
Query: 691 PGASSQSLPSTAAPERIGSSILEPS 715
++ S PS+ GSS E S
Sbjct: 171 QSGNASSGPSSGTTSSSGSSQSESS 195
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1498 1474 0.00096 124 3 11 22 0.40 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 629 (67 KB)
Total size of DFA: 547 KB (2250 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 141.61u 0.07s 141.68t Elapsed: 00:00:06
Total cpu time: 141.63u 0.07s 141.70t Elapsed: 00:00:06
Start: Sat May 11 14:29:15 2013 End: Sat May 11 14:29:21 2013