BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000444
(1498 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust.
Identities = 344/786 (43%), Positives = 478/786 (60%), Gaps = 63/786 (8%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 785 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 835
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737
Query: 836 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 891
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797
Query: 892 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 950
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843
Query: 951 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1007
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899
Query: 1008 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGS- 1063
R TE+ V + + NP +P ++ + +D + +L+ ++K +
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957
Query: 1064 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1123
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017
Query: 1124 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1182
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2018 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2077
Query: 1183 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 1242
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2078 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2137
Query: 1243 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 1302
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2138 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2195
Query: 1303 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 1362
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2196 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2244
Query: 1363 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 1422
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2245 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2304
Query: 1423 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 1482
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2364
Query: 1483 PVDDSM 1488
M
Sbjct: 2365 QAQQVM 2370
Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 307/555 (55%), Gaps = 58/555 (10%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 262
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 263 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 322
+ S QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS------ 1366
Query: 323 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 382
LA L H+ +N +
Sbjct: 1367 ---------LAGL----------------------------------APHITLNPTIPLF 1383
Query: 383 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 442
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1384 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1443
Query: 443 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 497
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1444 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1503
Query: 498 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 557
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1504 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1562
Query: 558 HLSVSQQRVYEDFVR 572
+ Q VYE+F R
Sbjct: 1563 GVDPKQLAVYEEFAR 1577
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust.
Identities = 343/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)
Query: 730 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 784
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 785 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 835
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736
Query: 836 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 891
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + + ++L + ++ L ++ A
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796
Query: 892 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 950
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842
Query: 951 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1007
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898
Query: 1008 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1063
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956
Query: 1064 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1123
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016
Query: 1124 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1182
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2017 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2076
Query: 1183 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 1242
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2077 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2136
Query: 1243 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 1302
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2137 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2194
Query: 1303 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 1362
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2195 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2243
Query: 1363 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 1422
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2244 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2303
Query: 1423 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 1482
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2363
Query: 1483 PVDDSM 1488
M
Sbjct: 2364 QAQQVM 2369
Score = 346 bits (887), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 198/555 (35%), Positives = 306/555 (55%), Gaps = 58/555 (10%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 262
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 263 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 322
+ S QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365
Query: 323 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 382
LA L H+ +N +
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382
Query: 383 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 442
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1442
Query: 443 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 497
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1443 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1502
Query: 498 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 557
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1503 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1561
Query: 558 HLSVSQQRVYEDFVR 572
+ Q VYE+F R
Sbjct: 1562 GVDPKQLAVYEEFAR 1576
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 338/755 (44%), Positives = 465/755 (61%), Gaps = 63/755 (8%)
Query: 761 SRDE-AALAVAQKVFKGLYENASNN------LHFSAHLAILAAIRD-------VCKLVVK 806
SRD AAL + QK +GL + S + HL +L A++D C K
Sbjct: 1664 SRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCN---K 1720
Query: 807 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQT 866
++T +I +E K+N + LIR+ L+N+ +Y++H+A+ ++ G N A FA+ L++
Sbjct: 1721 QITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKI 1780
Query: 867 LVTDE---SRVVISELHNLVDALAKLAA--KPGSPESLQQLIEIVRNPAANANASSGATT 921
L+ DE S V +E + ++ L ++ A + +PE L QL++++R +N +A
Sbjct: 1781 LLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLR---SNFDAMM---- 1833
Query: 922 AKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEW---YQICELPG 978
++A + +S + E Y+ DP G E+ L EW Y
Sbjct: 1834 ---ERAHGGPNFMMHSGISQASE-YD-------DPPGLREKAEYLLREWVNLYHSAAAGR 1882
Query: 979 SNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVA---HCLSSEVINPGTLQSPQQS 1035
+ A + +V Q+HQ G+LK DD+ RFFR TE+ V + + NP +P
Sbjct: 1883 DSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA--NPTMI 1940
Query: 1036 QSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPR 1094
++ + +D + +L+ ++K +KI LL+K+L + V +L+D E +++ F
Sbjct: 1941 RAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQL 2000
Query: 1095 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFM 1154
PY R+FI LL++++ + V + NFQ L+AF N FH+L+P K P F +AWLEL+SHR F+
Sbjct: 2001 PYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFI 2060
Query: 1155 PKLLIGN-GQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPE 1213
++L QKGWP +LL++L ++L PFLRN EL P++ LYKGTLRVLLVLLHDFPE
Sbjct: 2061 ARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPE 2120
Query: 1214 FLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEV 1273
FLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L EI PRI +
Sbjct: 2121 FLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNF 2180
Query: 1274 DAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYV 1333
+ Q + D+D YLKT P +FLSEL+ L + + G RYN+ LIN+LVLYV
Sbjct: 2181 TGVM-PPQFKKDLDSYLKTRSP-VTFLSELRSNLQV----SNEPGNRYNIQLINALVLYV 2234
Query: 1334 GMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLR 1393
G QAI +H + G+ S++ SA +DIFQ L DLDTEGRYLFLNA ANQLR
Sbjct: 2235 GTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLR 2287
Query: 1394 YPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 1453
YPN+HTHYFS +LYL+AEAN E IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP +
Sbjct: 2288 YPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAF 2347
Query: 1454 NFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 1488
FWN F+ CAPEIEKLF+SVA+ C G K M
Sbjct: 2348 KFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2382
Score = 334 bits (856), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 306/555 (55%), Gaps = 33/555 (5%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A + +E P + VQ+KI+FI NN+S N+ K +E E +K+ Y PW +Q
Sbjct: 1060 NIDTLLVATDLAGQIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQ 1118
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIE NFH LY FLD + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1119 YLVMKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLL 1178
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1179 KNLGHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1238
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 262
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LLKD+ R
Sbjct: 1239 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSL 1298
Query: 263 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 322
+ S QP+ +P P+ AS + A L S
Sbjct: 1299 DEQLSAPKKDVKQPEELP---------------PMTSAS--------EYAIRTAGKLWAS 1335
Query: 323 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 382
D A + + Q Q + + + + + H+ +N +
Sbjct: 1336 VEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYS-LAGLAPHITLNPTIPLF 1394
Query: 383 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 442
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1395 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1454
Query: 443 MVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS-----ELLEQAVQLVTNDNLDLG 497
M+ +L +A +TC+EPL SI++ L+NS A+ E++EQA + DN +L
Sbjct: 1455 MMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELA 1514
Query: 498 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 557
C I++ A +KA +D A + L RKH G + DP + + +PE +R K G
Sbjct: 1515 CCFIQKTAVEKAGPEMDKRPATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1573
Query: 558 HLSVSQQRVYEDFVR 572
+ Q VYE+F R
Sbjct: 1574 GVDPKQLAVYEEFAR 1588
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust.
Identities = 340/784 (43%), Positives = 479/784 (61%), Gaps = 56/784 (7%)
Query: 728 VAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN-- 784
+ Q L A+ A + Q + S + +++ SRD AAL + QK +GL + S
Sbjct: 1618 LEQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADP 1677
Query: 785 ----LHFSAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLN 836
+ HL +L A++D + K++T +I +E K+N + LIR+ L+N
Sbjct: 1678 ELLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN 1737
Query: 837 LAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA-- 891
+ +Y++H+A+ ++ G N A FA+ L++ L+ DE S + ++L + ++ L + +A
Sbjct: 1738 MQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHS 1797
Query: 892 KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPES 951
+ +PE L QL+++VR+ A D+ + +S + E Y+
Sbjct: 1798 RANAPEGLPQLMDVVRS----------NYEAMIDRHHGGPNFMMHSGISQASE-YD---- 1842
Query: 952 VDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFR 1008
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 ---DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFR 1899
Query: 1009 RLTE--VSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGSSK 1065
TE V +++ +E +P T SP ++ + +D + +L+ ++K +K
Sbjct: 1900 LCTEMCVEISYRAQAEQQHPTT--SPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTK 1957
Query: 1066 IFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAF 1125
I LL+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF
Sbjct: 1958 INLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAF 2017
Query: 1126 ANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEPFL 1184
N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L PFL
Sbjct: 2018 CNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFL 2077
Query: 1185 RNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN 1244
RN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRN
Sbjct: 2078 RNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRN 2137
Query: 1245 MRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELK 1304
MRLPDP TPNLK+D+L EI PRI + + + Q + D+D YLKT P +FLSEL+
Sbjct: 2138 MRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELR 2195
Query: 1305 QKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSA 1364
L + + G RYN+ LIN+LV YVG QAI +H + G+ S++ SA
Sbjct: 2196 SNLQV----SNEPGNRYNIQLINALVPYVGTQAI-------AHIHNKGSTPSMSTITHSA 2244
Query: 1365 ALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITR 1424
+DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITR
Sbjct: 2245 HMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITR 2304
Query: 1425 VLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV 1484
VL ERLIVNRPHPWGLLITFIELIKNP + FW+ F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 VLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQA 2364
Query: 1485 DDSM 1488
M
Sbjct: 2365 QQVM 2368
Score = 226 bits (577), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 25 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 84
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 85 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 144
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 145 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 202
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 203 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 258
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL+D+ +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDK 1300
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 369 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYA 428
+ H+ IN + L H ++ V A++RA++E+V +V RS+ IA T +++V KD+A
Sbjct: 1368 LAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA 1427
Query: 429 MESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIA-----SELLE 483
++S+E+ + AAH M+ +L +A +TC+EPL SI++ L+NS A E++E
Sbjct: 1428 LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME 1487
Query: 484 QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQ 543
+A + DN +L C I++ A +KA +D +A + L RKH G + DP +
Sbjct: 1488 EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPMVLTY 1546
Query: 544 GSMGVPEALRPKPGHLSVSQQRVYEDFVR 572
+ +PE +R K G + Q VYE+F R
Sbjct: 1547 QAERMPEQIRLKVGGVDPKQLAVYEEFAR 1575
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 364 bits (935), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 319/1104 (28%), Positives = 501/1104 (45%), Gaps = 178/1104 (16%)
Query: 389 QRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLA 448
+ + + + +++ EI+S +V+RSV IA TTK L+ KD+A ES+ +R+ AA M +LA
Sbjct: 1132 KNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLA 1191
Query: 449 GSLAHVTCKEPLRGSISSQLRN-SLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATD 507
G+LA VTC+EPL+ + + R +LQ + + QA+ + + NL + +VIE A++
Sbjct: 1192 GNLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASE 1251
Query: 508 KAIQTIDGEIAQQLSLRRKHREGVGS-SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRV 566
AI ID EI + R +HR+ + F DP A + +P L+ L+ Q ++
Sbjct: 1252 TAIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQL 1310
Query: 567 YEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAV 626
YE+F RL S S G T S D+ A L N + A T +
Sbjct: 1311 YENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDALNSNL-----NNTVENEANQTALN-Y 1364
Query: 627 SRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTE 686
+R + G +A TS+ + A LH E VN T A+
Sbjct: 1365 ARNLLIIIGQLFQLAAQMPYTSMQEVPADHE--LH----ELVNQFLTGVAS--------- 1409
Query: 687 PVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQ 746
+ P A L + AQ+ ++ D++ +
Sbjct: 1410 -INHPIADHVFL----------------------------LCAQECCRILLTDSKSPFIL 1440
Query: 747 GVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVK 806
V S + E I C + + A+ V+ LY N SN+L IL+ IR
Sbjct: 1441 EVFSAILEYI--CQASTKTAINVS------LYWNFSNDLEKLNLPIILSLIR-------- 1484
Query: 807 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA-ATEFAISLLQ 865
G++ S E + H+A+ + + T+FAI LL+
Sbjct: 1485 --------------------FGILTS-----GEVDYHVARGVRSEQGSGPVTDFAIELLR 1519
Query: 866 TLVTDESRVVISELHNLVDALAKL-----AAKPGSPESLQQLIEIVRNPAANANASSGAT 920
T V E+ + + N V+++ L + + ++ +QL+E + N + S +
Sbjct: 1520 TAVGGENPMALP--GNFVNSITSLYEISESFSGETKQAYEQLVETM-----NKSVSPASE 1572
Query: 921 TAKD-DKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 979
D D +Q D Q+ ++F W + +
Sbjct: 1573 ILSDLDNKQQLND-----------------------------QIIIVFVSWVHLLRNSAT 1603
Query: 980 NDAACTRYVLQLHQNGLLKGDDMTDRFFR-RLTEVSVAHCLSSEVINPGTLQSPQQSQSL 1038
ND +V QLH+ G+L ++ +FFR L V VA ++ V P
Sbjct: 1604 NDETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPD----------- 1652
Query: 1039 SFLAIDIYAKLMLSILKCCP-VEQG--SSKIFLLSKILTVTVKFILKDAEEKKASF-NPR 1094
+ +D YA L+++++K +G SSK L KI+ + + + + A F + +
Sbjct: 1653 -YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIG-VFAELHNSMAEFVHQK 1710
Query: 1095 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFM 1154
+FRLF + L ++ V + I S F +QP PAF+FAWL L+SH +
Sbjct: 1711 TFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLL 1770
Query: 1155 PKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEF 1214
PK+L+ N K +L++ L+FL+ L++ + LY G LR++LVLLHDFP F
Sbjct: 1771 PKVLLVNNDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGF 1828
Query: 1215 LCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVD 1274
L + + IP C+Q+RN++LSAFP ++ LPDP LK+ LPE+ P I + V
Sbjct: 1829 LATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVS 1888
Query: 1275 AALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVG 1334
A+L D++ + +P KLLL + T+ N N +L +
Sbjct: 1889 ASLEKFASALDLEACFSSSKPAEV------AKLLLEVYSSQDTPTKLN-EWANYFMLCLI 1941
Query: 1335 MQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRY 1394
A TR S A+ S + V I T+ + D++ RY L A ANQLRY
Sbjct: 1942 RHA-----TRDSPAKQAPQFQSKSPECV-----IISTMNRSCDSKCRYFLLTAIANQLRY 1991
Query: 1395 PNNHTHYFSFVLLYLYAEAN---QE-IIQEQITRVLFERLIVNRPHPWGLLITFIELIKN 1450
P++HT+Y S LYL+ ++ QE +I+EQ+T VL ER+I NRPHPWGLLITF EL+KN
Sbjct: 1992 PSSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKN 2051
Query: 1451 PRYNFWNQSFIRCAPEIEKLFESV 1474
YNFW +I+ EI +LF+S+
Sbjct: 2052 EDYNFWKHPYIKRNDEICRLFDSL 2075
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Query: 39 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 92
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 93 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 152
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 153 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 212
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 213 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDR 256
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNH 1076
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 199/759 (26%), Positives = 363/759 (47%), Gaps = 95/759 (12%)
Query: 742 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVC 801
+ +++ +I ++ I + +D+ AL V+Q V L+ + + L +L + +
Sbjct: 1393 QNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLS 1452
Query: 802 KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA--ATEF 859
+ K++ W++Y+ + RKFN + L+ L++ E + L+ +NK +TEF
Sbjct: 1453 LVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELD---NVLVTAMKNKMENSTEF 1509
Query: 860 AISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGA 919
A+ L+Q V + +++ + + L LA+ + + N
Sbjct: 1510 AMKLIQNTVLSDDPILMR--MDFIKTLEHLAS------------------SEDENVKKFI 1549
Query: 920 TTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 979
+D K + + T E++ ++F EW ++ + +
Sbjct: 1550 KEFEDTKIMPVRKGTKTTRT---------------------EKLYLVFTEWVKLLQRVEN 1588
Query: 980 NDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1039
ND T ++ QL + G++ D F + E+SV+ S+ +
Sbjct: 1589 NDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKESDPTDE------------V 1636
Query: 1040 FLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRL 1099
F+AID L++ +L + + + ++ + I +V V KD ++ +FN RPYFRL
Sbjct: 1637 FIAIDALGSLIIKLLILQGFKDDTRRDYI-NAIFSVIVLVFAKDHSQEGTTFNERPYFRL 1695
Query: 1100 FINWLLDMSSLDP-----VADGSNFQIL----SAFANAF----HVLQPLKVPAFSFAWLE 1146
F N L + +++ ++D S Q L S F N F H LQP P FSFAW+
Sbjct: 1696 FSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFAWVT 1755
Query: 1147 LVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLV 1206
L+SHR +P +L + GW + L+++L +FL+ + + V +YKGTLRV+L
Sbjct: 1756 LLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILG 1815
Query: 1207 LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDP 1266
+ +D P FL + H+ + +PP+ Q++N+ILSA P+NM +P+P +L ++ +P ++
Sbjct: 1816 ISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKEL 1875
Query: 1267 PRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNV--- 1323
P +F D + ++ VD+YL+ P +S L + + + G Y+
Sbjct: 1876 PEVF--FDPVIDLHSLKKPVDNYLRI--PSNSLLRTILSA-IYKDTYDIKKGVGYDFLSV 1930
Query: 1324 --PLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGR 1381
LI ++VL+VG++A + + +S+A +S T LIQ+ E +
Sbjct: 1931 DSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLF---------NLIQNGSIEMK 1981
Query: 1382 YLFLNAAANQLRYPNNHTHYFSFVLLYLYA--EANQEI--IQEQITRVLFERLIVNRPHP 1437
Y + + QLRYPN HT++FSFVL+ ++ E N + +QE I R +R+IVN+PH
Sbjct: 1982 YQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNKPHT 2041
Query: 1438 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVAR 1476
WG+ + F +LI N N + F++ PEI+ + + + +
Sbjct: 2042 WGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVK 2080
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 41 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 100
E +V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDL
Sbjct: 779 EGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDL 838
Query: 101 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 160
Y K + + S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+
Sbjct: 839 YSKVIVAMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNK 896
Query: 161 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 220
++ + I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+
Sbjct: 897 PIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELN 956
Query: 221 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL 253
N K++L F++EVL K+ + K + P++ +
Sbjct: 957 EKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%)
Query: 380 TALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNA 439
T H +RV +A+ ++++EI+ +V++S IA TT +++LKD+A E DE+++ A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 440 AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCA 499
A +MV LA SLA T EPL+ I S +++ L S + + N+N+ +
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALV 1199
Query: 500 VIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHL 559
+IE+A+ DK+ Q + ++ Q +++RR H+E F S+ +PE L K +
Sbjct: 1200 LIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGV 1259
Query: 560 SVSQQRVYEDF 570
+ Q RVYE+F
Sbjct: 1260 TPQQFRVYEEF 1270
>sp|Q8TSP6|SYC_METAC Cysteine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=cysS PE=3 SV=1
Length = 473
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 1335 MQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRY 1394
++A+ +L+T+ HA N+ AL +F+ L + + L+L A N+
Sbjct: 349 LKALPELETQFRHALEDDFNTP-------RALTVFRELSRTAN-----LYLEAGKNRKVL 396
Query: 1395 PNNHTHYFSFV-LLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 1453
HT Y F +L L+A+A +E I E++ R++ ER + WG T E I+ Y
Sbjct: 397 EKVHTLYRKFSDVLGLFAQAGKEEIPEEVFRLVEEREAARKKKDWGTSDTLREKIRTLGY 456
Query: 1454 NFWNQSFIRCAPEIEKLFES 1473
++ + P ++K ES
Sbjct: 457 IIQDK---KEGPNVKKAEES 473
>sp|A6LSY5|HEM3_CLOB8 Porphobilinogen deaminase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=hemC PE=3 SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 403 IVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV-----ASLAGSLAHVTCK 457
+ G + VS+A K L +KD + E R A H M S +A +T +
Sbjct: 39 VTEGDRKLDVSLAKIGGKGLFVKDIEIALLEKRADGAVHSMKDVPYELSHEFEIAAITER 98
Query: 458 EPLRGSISSQ----LRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIE---QAATDKAI 510
E +R + S+ + +G I + + +A QL N DL I Q +K
Sbjct: 99 EDIRDVLISKDNIPFKELRKGAIIGTSSIRRACQLKLMRN-DLDIVPIRGNVQTRLEKMK 157
Query: 511 -QTIDGEIAQQLSLRRKHREGVGSSFFDPNIY----AQGSMGV 548
Q +DG I L+R + E + + +FDP ++ AQG++G+
Sbjct: 158 EQNLDGIILASAGLKRLNEEDIITEYFDPKVFIPAVAQGALGI 200
>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
Length = 6254
Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 24/191 (12%)
Query: 532 GSSFFDPNIYAQG----SMGVPEALRPKPGHLSVSQQRVYEDFVRLP------WQNQSSQ 581
GS P++ G S+GV A PG + E P QS Q
Sbjct: 1642 GSGTTGPSVVRSGTTRLSVGVTRATESSPGVTGTTTPSAEESRTTGPSVLVTGTTGQSGQ 1701
Query: 582 GSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTS 641
GS + S SG + S G + G ++A ST + ++PS +GTT +
Sbjct: 1702 GS-GTTGKSFIESGPSVVGSG---TTGPTSAGLGTTAPSTRRSSTTKPSVGRTGTTGQSG 1757
Query: 642 AGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPST 701
A + A G+ S V+ P+ATE + ++ P+ E + ++PS
Sbjct: 1758 A---ESGTTEPSARVAGV--TGTSAEVSGRIEPSATE---SSTSRPLGE--TTGTTIPSM 1807
Query: 702 AAPERIGSSIL 712
E G S++
Sbjct: 1808 EGSEATGPSVI 1818
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 19 KFGSALNIETLVAAAERRETPIEAPASE--VQDKISFIINNISALNVEAKAKEFTEILKE 76
K+G N+E+++A R + E P++ + D +SF+ + NVE K+ E
Sbjct: 781 KYGRLENLESILAD-NRLDFLAEDPSTHYNIFDYLSFLAGRYAKENVEKIEKKLIEFYFS 839
Query: 77 QYYPWFAQY-MVMKRASIEPNFHDLYLKF 104
Y+P+ A Y +V +P+ D Y+ +
Sbjct: 840 HYFPFEAHYKLVALNGKYDPSTRDWYIYY 868
>sp|P56342|PSAB_CHLVU Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorella
vulgaris GN=psaB PE=3 SV=1
Length = 734
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 775 KGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTS 810
KGLY+ +N+LHF LA LA++ +C LV + + S
Sbjct: 320 KGLYDTVNNSLHFQLGLA-LASVGTICSLVAQHMYS 354
>sp|Q1KVS5|PSAB_SCEOB Photosystem I P700 chlorophyll a apoprotein A2 OS=Scenedesmus
obliquus GN=psaB PE=3 SV=1
Length = 735
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 775 KGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTS 810
KGL+E +N+LHF LA LA++ +C LV + + S
Sbjct: 321 KGLFETVNNSLHFQLGLA-LASVGTICSLVAQHMYS 355
>sp|Q9Y2D5|AKAP2_HUMAN A-kinase anchor protein 2 OS=Homo sapiens GN=AKAP2 PE=1 SV=3
Length = 859
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 272 GASQPQLVPEVKPAIVSPLGHV--DLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 329
G S P+L +KP PLG V D PL PP+ GGP AA + S G L
Sbjct: 343 GQSTPRLF-SIKP-FYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKGQKSPGAL--- 397
Query: 330 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNI----GTHVIINQKLTAL--- 382
E +A G +QG + + P+S P+ + G LT +
Sbjct: 398 ETPSAAG-------SQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD 450
Query: 383 --GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMES 431
G+ F R V +++ + +E+ SG+ + SV T E + D++M++
Sbjct: 451 DHGILDQFSRSVNVSLTQ--EELDSGLDELSVRSQDTTVLETLSNDFSMDN 499
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,260,744
Number of Sequences: 539616
Number of extensions: 21892355
Number of successful extensions: 67578
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 66458
Number of HSP's gapped (non-prelim): 832
length of query: 1498
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1367
effective length of database: 120,879,763
effective search space: 165242636021
effective search space used: 165242636021
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)