Query 000444
Match_columns 1498
No_of_seqs 155 out of 270
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:47:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000444.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_220-224//hhsearch_pdb/000444hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b89_A General negative regula 1.0 1 1 647.4 16.4 230 22-258 14-243 (249)
2 4gmj_A CCR4-NOT transcription 1.0 1 1 644.1 20.5 219 42-260 2-222 (229)
3 1hu3_A EIF4GII; heat repeat, t 1.0 1 1 32.6 7.5 65 45-110 9-75 (260)
4 2vso_E Eukaryotic initiation f 1.0 1 1 32.3 10.4 14 985-998 177-190 (284)
5 3rk6_A Polyadenylate-binding p 1.0 1 1 31.6 7.6 68 42-110 14-88 (234)
6 1h2v_C 80 kDa nuclear CAP bind 1.0 1 1 20.0 8.9 106 43-156 4-117 (771)
7 3r4v_A Putative uncharacterize 1.0 1 1 18.4 -1.6 19 481-499 159-177 (315)
8 4g4g_A 4-O-methyl-glucuronoyl 1.0 1 1 14.4 4.6 12 546-557 57-68 (433)
9 3vu7_H DNA repair protein REV1 1.0 1 1 14.1 3.4 33 961-993 39-72 (124)
10 2y0n_A MALE-specific lethal 3 1.0 1 1 14.1 4.2 51 1163-1224 143-193 (211)
No 1
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=1.00 E-value=1 Score=647.36 Aligned_cols=230 Identities=33% Similarity=0.637 Sum_probs=220.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 66684458986310789988999776542643012678121999999999984511733899988863112476305899
Q 000444 22 SALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLY 101 (1498)
Q Consensus 22 ~~~ni~tL~~~~~~~~~~~e~P~e~v~dki~FivNNls~~Nl~~K~~Elk~~l~~~y~~WFa~YLV~~Ras~EpN~H~LY 101 (1498)
+..++|++... ..+|.|||+|+|||+|++||+|++|+++|++|+++.|+++|++|||+|||++||++|||||++|
T Consensus 14 ~~~~v~~~~~~-----~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY 88 (249)
T 4b89_A 14 KFFAVDEVSCQ-----INQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLY 88 (249)
T ss_dssp TTBCCCCCCCC-----SCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHH
T ss_pred EECCCCCCCCC-----CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 21156899988-----6678939899744610000388678999999999998788899999999964520377538999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999818756999999999999999723100025857888899777666555420485420267881468999985093
Q 000444 102 LKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL 181 (1498)
Q Consensus 102 ~~~l~~l~~~~L~~~il~~T~~~~~~LL~s~~~~~~s~eR~~LKNLG~WLG~iTlarnkPi~~k~l~~K~Ll~eay~~~~ 181 (1498)
++|+++++++.|+++|+++||+++++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+|||++|+
T Consensus 89 ~~~l~~l~~~~L~~~vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~ 166 (249)
T 4b89_A 89 SKVIVAMGSGLLHQFMVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENR 166 (249)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHCCC
T ss_conf 999999587789999999999999999634315--767899999999998599870488722113589999999997298
Q ss_pred EEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 26980101220013456754469993199999999998129973203589899997430897544456321234011
Q 000444 182 MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 258 (1498)
Q Consensus 182 l~~viPFv~kvL~~~~~SkvFkppNPW~~~il~lL~Ely~~~~lKlnLkFEIEvL~k~L~l~~~~i~ps~~L~~r~~ 258 (1498)
|.+|||||||||++|++|+||+|||||||+||++|+|||++++||+|+|||||||||+|++|++|++|+++|+++++
T Consensus 167 L~~vIPFVcKvLe~~k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 167 LEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp HHHHHHHHHHHHGGGTTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred EEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHH
T ss_conf 47984189999875635871689993199999999999838121475999999999975998676784120588789
No 2
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=1.00 E-value=1 Score=644.06 Aligned_cols=219 Identities=47% Similarity=0.850 Sum_probs=214.8
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99977654264301267812199999999998451173389998886311247630589999999818756999999999
Q 000444 42 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQAT 121 (1498)
Q Consensus 42 ~P~e~v~dki~FivNNls~~Nl~~K~~Elk~~l~~~y~~WFa~YLV~~Ras~EpN~H~LY~~~l~~l~~~~L~~~il~~T 121 (1498)
.++|+|+|||+|+|||+|++|+++|++|+|+.++++|++|||+|||++|||+|||||+||++|+++++++.|+++|+++|
T Consensus 2 ~~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T 81 (229)
T 4gmj_A 2 MLEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNET 81 (229)
T ss_dssp CSCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 87577664440110139888999999999999868789999999998665216543799999999968088999999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC--EEEEECHHHHCCCCCCCC
Q ss_conf 999999723100025857888899777666555420485420267881468999985093--269801012200134567
Q 000444 122 YENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSS 199 (1498)
Q Consensus 122 ~~~~~~LL~s~~~~~~s~eR~~LKNLG~WLG~iTlarnkPi~~k~l~~K~Ll~eay~~~~--l~~viPFv~kvL~~~~~S 199 (1498)
|++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|
T Consensus 82 ~~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S 161 (229)
T 4gmj_A 82 YRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRS 161 (229)
T ss_dssp HHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC
T ss_conf 99999997301112365799999989999889987158983321327999999999779753887510699999755168
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5446999319999999999812997320358989999743089754445632123401110
Q 000444 200 LAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 260 (1498)
Q Consensus 200 kvFkppNPW~~~il~lL~Ely~~~~lKlnLkFEIEvL~k~L~l~~~~i~ps~~L~~r~~~~ 260 (1498)
+||||||||||+||++|+|||++++||+|+|||||||||+|+++++|++|+++|++|++..
T Consensus 162 ~iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~ 222 (229)
T 4gmj_A 162 VVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK 222 (229)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCHHC
T ss_conf 8478998369999999999984756305589999999997699856568136662431100
No 3
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=32.55 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 7765426430126781219999999999845--11733899988863112476305899999998187
Q 000444 45 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 110 (1498)
Q Consensus 45 e~v~dki~FivNNls~~Nl~~K~~Elk~~l~--~~y~~WFa~YLV~~Ras~EpN~H~LY~~~l~~l~~ 110 (1498)
+.+..+|..++|-||++|++.=+.++.++-- ++-..=+ --+|.+.|..||+|=.+|++|...|..
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~v-i~~if~kA~~ep~f~~~YA~Lc~~L~~ 75 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGV-IDLVFEKAIDEPSFSVAYANMCRCLVT 75 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999810887999999999997607999999999-999999987181179999999999997
No 4
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=1.00 E-value=1 Score=32.29 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=8.7
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999998869656
Q 000444 985 TRYVLQLHQNGLLK 998 (1498)
Q Consensus 985 ~~Fi~qL~~~giL~ 998 (1498)
..||..|...+++.
T Consensus 177 i~FIgeLyk~~~l~ 190 (284)
T 2vso_E 177 VRFIGFLYRLNLLT 190 (284)
T ss_dssp HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998646876
No 5
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=31.61 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999776542643012678--1219999999999845-----11733899988863112476305899999998187
Q 000444 42 APASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 110 (1498)
Q Consensus 42 ~P~e~v~dki~FivNNls--~~Nl~~K~~Elk~~l~-----~~y~~WFa~YLV~~Ras~EpN~H~LY~~~l~~l~~ 110 (1498)
.-++.+..+|..++|-|| ++|++.-+.++.+.+. ++...-+..-+. +.|-.||||-.+|+++...+..
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIf-ekAi~ep~fs~~YA~LC~~l~~ 88 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIY-QQATSIPNFSYMGARLCNYLSH 88 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH-HHHHSSTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 55299999999999974688651899999999998437998999999999999-9998681328999999999998
No 6
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=1.00 E-value=1 Score=20.05 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH--HHH
Q ss_conf 997765426430126781---21999999999984511---7338999888631124763058999999981875--699
Q 000444 43 PASEVQDKISFIINNISA---LNVEAKAKEFTEILKEQ---YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--ALN 114 (1498)
Q Consensus 43 P~e~v~dki~FivNNls~---~Nl~~K~~Elk~~l~~~---y~~WFa~YLV~~Ras~EpN~H~LY~~~l~~l~~~--~L~ 114 (1498)
|.+++.++|-.++-+++. +|+++.+.++...|.++ +-.-|+.-+ ++-+...|..-.+|.-++--+|.+ .+-
T Consensus 4 ~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l-~~~~~~~P~Kt~vyAaLVgllN~k~pe~G 82 (771)
T 1h2v_C 4 DANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLL-CTVARLLPEKLTIYTTLVGLLNARNYNFG 82 (771)
T ss_dssp ------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHH-HHHHHHCGGGHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 72107889999999737888763777899999999877776589999999-99999688734699999999976885699
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999972310002585788889977766655542
Q 000444 115 REIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTI 156 (1498)
Q Consensus 115 ~~il~~T~~~~~~LL~s~~~~~~s~eR~~LKNLG~WLG~iTl 156 (1498)
+.+++.+..+...-++. .+....|.+-.+|+.+.-
T Consensus 83 ~~lv~~l~~~f~~~l~~-------~~~~~~k~~lrFLa~L~n 117 (771)
T 1h2v_C 83 GEFVEAMIRQLKESLKA-------NNYNEAVYLVRFLSDLVN 117 (771)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHCC
T ss_conf 99999999999999873-------586889999999997223
No 7
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Probab=1.00 E-value=1 Score=18.37 Aligned_cols=19 Identities=0% Similarity=-0.134 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999755889999
Q 000444 481 LLEQAVQLVTNDNLDLGCA 499 (1498)
Q Consensus 481 ~~e~~i~~~~~dNldl~c~ 499 (1498)
++.+.++.-+.+.++....
T Consensus 159 lp~~~lN~eia~rL~al~~ 177 (315)
T 3r4v_A 159 RSYESINDEIAEKIRKVVL 177 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 7467788999999999999
No 8
>4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A*
Probab=1.00 E-value=1 Score=14.38 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 689877789999
Q 000444 546 MGVPEALRPKPG 557 (1498)
Q Consensus 546 ~~LPe~Lr~k~g 557 (1498)
..||+||...-|
T Consensus 57 ~~LPDpf~~~~G 68 (433)
T 4g4g_A 57 AKLPDPFTTASG 68 (433)
T ss_dssp SSCCCTTBCTTS
T ss_pred CCCCCCCCCCCC
T ss_conf 679996515899
No 9
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=1.00 E-value=1 Score=14.12 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHH
Q ss_conf 899999999998633999985-369999999988
Q 000444 961 EQVSMLFAEWYQICELPGSND-AACTRYVLQLHQ 993 (1498)
Q Consensus 961 eq~~~iF~EWV~l~~~~~~~d-~~~~~Fi~qL~~ 993 (1498)
.++.-++.+||.-+.-|...| ..+..|+.+|.+
T Consensus 39 ~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVe 72 (124)
T 3vu7_H 39 NDVKTLLREWITTISDPMEEDILQVVKYCTDLIE 72 (124)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999975889988899999999999701
No 10
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.10 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 78928999999999994443104788880378987868899999870240578987663101
Q 000444 1163 QKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCD 1224 (1498)
Q Consensus 1163 ~~gW~~~~~LL~~llkFl~~~l~~~~l~~~~~~lYkgtLRilLvLlHDfPeFL~~~h~~lc~ 1224 (1498)
--|-..+.||++-|=.+++ ...+++ ..+.+|+.-++||=+||.+||-.|..
T Consensus 143 iYGa~HLLRLfvkLPelL~----~t~~d~-------~s~~~L~~~l~~fl~fL~~n~~~~F~ 193 (211)
T 2y0n_A 143 IYGAQHLLRLFVKLPEILG----KMSFSE-------KNLKALLKHFDLFLRFLAEYHDDFFP 193 (211)
T ss_dssp TCCHHHHHHHHHHHHHHHH----HSCCCH-------HHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HCCHHHHHHHHHHHHHHHH----CCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7389999999998689881----389999-------99999999999999999998998388
Done!