Query 000445
Match_columns 1498
No_of_seqs 233 out of 711
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879 UDP-glucose:glycoprote 100.0 1E-275 3E-280 2493.0 104.0 1309 28-1498 16-1341(1470)
2 PF06427 UDP-g_GGTase: UDP-glu 100.0 2.6E-54 5.7E-59 472.5 19.5 205 1012-1217 1-211 (211)
3 cd06432 GT8_HUGT1_C_like The C 100.0 6E-30 1.3E-34 290.3 14.8 160 1339-1498 1-160 (248)
4 cd00505 Glyco_transf_8 Members 99.9 6.6E-22 1.4E-26 225.1 12.7 145 1339-1484 1-156 (246)
5 PRK15171 lipopolysaccharide 1, 99.8 4.4E-20 9.5E-25 218.4 15.0 151 1337-1489 24-194 (334)
6 cd04194 GT8_A4GalT_like A4GalT 99.8 1.5E-18 3.3E-23 197.7 14.6 144 1339-1484 1-155 (248)
7 COG1442 RfaJ Lipopolysaccharid 99.8 2.5E-18 5.3E-23 200.1 11.7 157 1338-1496 2-171 (325)
8 cd06429 GT8_like_1 GT8_like_1 99.7 1.8E-17 3.9E-22 188.9 12.2 130 1339-1484 1-153 (257)
9 cd06431 GT8_LARGE_C LARGE cata 99.7 9.1E-17 2E-21 185.7 13.6 129 1340-1468 2-135 (280)
10 cd06430 GT8_like_2 GT8_like_2 99.6 2.1E-15 4.5E-20 173.9 14.4 147 1339-1488 1-171 (304)
11 PLN02718 Probable galacturonos 99.6 8.2E-16 1.8E-20 187.0 10.8 132 1336-1471 311-455 (603)
12 PLN02523 galacturonosyltransfe 99.5 7.1E-14 1.5E-18 168.4 12.2 127 1339-1470 249-413 (559)
13 PF01501 Glyco_transf_8: Glyco 99.4 7.5E-13 1.6E-17 149.6 10.3 142 1340-1484 1-161 (250)
14 PLN02742 Probable galacturonos 99.3 1.3E-11 2.8E-16 149.1 9.9 117 1353-1470 239-389 (534)
15 PLN02829 Probable galacturonos 99.2 2.7E-11 5.9E-16 147.6 9.3 127 1339-1471 360-494 (639)
16 PLN02769 Probable galacturonos 99.2 2.8E-11 6E-16 148.7 8.6 53 1418-1471 437-489 (629)
17 PLN02659 Probable galacturonos 99.2 5.5E-11 1.2E-15 143.5 9.2 53 1417-1470 328-380 (534)
18 PLN02870 Probable galacturonos 99.2 5.2E-11 1.1E-15 143.7 8.5 54 1417-1471 327-380 (533)
19 PLN02867 Probable galacturonos 99.1 1.2E-10 2.7E-15 141.1 8.2 49 1418-1467 330-378 (535)
20 PLN02910 polygalacturonate 4-a 99.1 2.4E-10 5.1E-15 139.3 9.4 54 1417-1471 459-512 (657)
21 cd02537 GT8_Glycogenin Glycoge 99.0 2.6E-09 5.7E-14 121.7 11.8 127 1341-1484 3-131 (240)
22 PLN00176 galactinol synthase 98.4 2.1E-06 4.6E-11 101.4 13.9 115 1345-1470 30-147 (333)
23 cd06914 GT8_GNT1 GNT1 is a fun 97.8 0.0001 2.2E-09 85.5 12.0 115 1343-1466 5-123 (278)
24 KOG1879 UDP-glucose:glycoprote 96.9 0.53 1.2E-05 63.0 29.9 194 677-874 336-541 (1470)
25 PF11051 Mannosyl_trans3: Mann 95.3 0.033 7.1E-07 65.1 6.9 109 1341-1457 4-114 (271)
26 cd03019 DsbA_DsbA DsbA family, 92.8 5 0.00011 43.2 17.1 144 531-712 14-158 (178)
27 PF13462 Thioredoxin_4: Thiore 89.5 8.9 0.00019 40.4 14.8 134 534-711 14-150 (162)
28 cd03023 DsbA_Com1_like DsbA fa 87.8 13 0.00029 38.5 14.5 136 534-711 7-143 (154)
29 PF13620 CarboxypepD_reg: Carb 84.0 3.4 7.4E-05 38.7 7.0 52 1182-1234 2-54 (82)
30 PF13462 Thioredoxin_4: Thiore 78.3 5.2 0.00011 42.3 6.8 50 218-268 4-57 (162)
31 cd03019 DsbA_DsbA DsbA family, 77.4 1.1E+02 0.0023 32.9 16.7 143 797-959 14-156 (178)
32 PF01323 DSBA: DSBA-like thior 74.6 87 0.0019 34.0 15.3 156 535-706 1-176 (193)
33 PF00535 Glycos_transf_2: Glyc 73.5 16 0.00035 37.5 8.9 92 1351-1456 10-102 (169)
34 PF13715 DUF4480: Domain of un 73.2 36 0.00078 32.4 10.4 47 1182-1234 2-50 (88)
35 PF07210 DUF1416: Protein of u 72.8 20 0.00043 34.5 8.0 54 1179-1234 7-60 (85)
36 cd00761 Glyco_tranf_GTA_type G 65.8 39 0.00085 33.6 9.6 87 1351-1451 9-95 (156)
37 COG5597 Alpha-N-acetylglucosam 63.6 3.2 7E-05 48.4 1.1 33 1433-1467 167-199 (368)
38 cd06423 CESA_like CESA_like is 62.6 62 0.0013 33.1 10.6 94 1348-1454 6-100 (180)
39 PF08400 phage_tail_N: Prophag 61.6 27 0.00058 36.7 7.2 60 1179-1238 2-67 (134)
40 cd03023 DsbA_Com1_like DsbA fa 55.8 23 0.00049 36.7 5.9 42 227-268 5-47 (154)
41 KOG1948 Metalloproteinase-rela 53.4 68 0.0015 42.6 10.2 98 1136-1238 78-176 (1165)
42 cd04196 GT_2_like_d Subfamily 52.5 1E+02 0.0023 33.4 10.7 95 1349-1456 8-103 (214)
43 cd03025 DsbA_FrnE_like DsbA fa 51.8 2.2E+02 0.0047 31.0 13.0 156 534-704 1-176 (193)
44 cd04185 GT_2_like_b Subfamily 47.1 76 0.0016 34.5 8.5 95 1349-1455 7-102 (202)
45 PRK10954 periplasmic protein d 46.9 3E+02 0.0065 30.8 13.3 45 665-710 136-180 (207)
46 cd06439 CESA_like_1 CESA_like_ 46.1 1.4E+02 0.003 33.7 10.7 101 1338-1456 30-133 (251)
47 cd04186 GT_2_like_c Subfamily 46.1 1.3E+02 0.0028 30.9 9.8 88 1351-1455 9-97 (166)
48 PRK11204 N-glycosyltransferase 41.9 1.5E+02 0.0034 36.6 11.0 100 1338-1454 55-156 (420)
49 PF13743 Thioredoxin_5: Thiore 38.6 3E+02 0.0065 30.2 11.3 152 538-704 2-155 (176)
50 cd03022 DsbA_HCCA_Iso DsbA fam 35.8 2.2E+02 0.0048 30.8 9.9 45 666-711 137-181 (192)
51 cd04187 DPM1_like_bac Bacteria 35.7 2E+02 0.0044 30.6 9.5 93 1350-1456 8-104 (181)
52 cd02515 Glyco_transf_6 Glycosy 34.6 1.7E+02 0.0037 34.4 8.8 107 1335-1451 32-141 (271)
53 cd06435 CESA_NdvC_like NdvC_li 33.9 3.4E+02 0.0073 30.2 11.3 104 1351-1466 11-117 (236)
54 PRK15036 hydroxyisourate hydro 31.2 89 0.0019 33.1 5.5 54 1181-1234 28-89 (137)
55 PF13641 Glyco_tranf_2_3: Glyc 31.0 71 0.0015 35.5 5.1 95 1349-1454 11-108 (228)
56 cd04188 DPG_synthase DPG_synth 30.8 2.5E+02 0.0055 30.8 9.4 96 1348-1456 6-106 (211)
57 cd04192 GT_2_like_e Subfamily 30.5 1.6E+02 0.0034 32.3 7.8 97 1348-1455 6-105 (229)
58 cd02520 Glucosylceramide_synth 29.2 3.3E+02 0.0072 29.6 10.0 98 1348-1456 10-110 (196)
59 cd02972 DsbA_family DsbA famil 27.0 77 0.0017 29.6 3.9 39 231-269 1-41 (98)
60 cd06442 DPM1_like DPM1_like re 26.6 4.7E+02 0.01 28.6 10.7 95 1348-1456 6-102 (224)
61 cd06420 GT2_Chondriotin_Pol_N 26.4 3.5E+02 0.0077 28.5 9.4 96 1349-1456 7-103 (182)
62 PRK06437 hypothetical protein; 26.1 57 0.0012 30.1 2.7 22 937-958 26-47 (67)
63 PRK11657 dsbG disulfide isomer 25.1 1.3E+02 0.0029 34.9 6.1 40 225-264 115-154 (251)
64 PRK10877 protein disulfide iso 24.9 3.9E+02 0.0085 30.7 9.8 38 534-571 109-146 (232)
65 PRK05454 glucosyltransferase M 24.3 3.6E+02 0.0078 36.2 10.5 120 1337-1466 124-254 (691)
66 cd02982 PDI_b'_family Protein 24.0 1.3E+02 0.0029 28.9 5.1 38 227-264 12-51 (103)
67 cd03866 M14_CPM Peptidase M14 23.2 1.5E+02 0.0033 36.6 6.4 53 1179-1234 294-346 (376)
68 PF03666 NPR3: Nitrogen Permea 22.8 3.3E+02 0.0071 34.6 9.2 33 669-705 188-220 (452)
69 cd04195 GT2_AmsE_like GT2_AmsE 22.5 6.5E+02 0.014 27.0 10.7 88 1352-1454 13-102 (201)
70 cd06433 GT_2_WfgS_like WfgS an 22.2 9.3E+02 0.02 25.3 13.5 90 1348-1454 7-97 (202)
71 PF03414 Glyco_transf_6: Glyco 21.8 3.2E+02 0.007 33.2 8.3 117 1336-1467 98-218 (337)
72 PRK14583 hmsR N-glycosyltransf 20.4 4.8E+02 0.01 32.8 10.2 100 1338-1454 76-177 (444)
73 cd03863 M14_CPD_II The second 20.1 2.6E+02 0.0056 34.7 7.4 51 1179-1234 296-347 (375)
74 PRK10954 periplasmic protein d 20.1 3.5E+02 0.0075 30.3 8.0 52 902-958 128-179 (207)
No 1
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-275 Score=2492.97 Aligned_cols=1309 Identities=43% Similarity=0.697 Sum_probs=1158.2
Q ss_pred hcccCCCceEEEEEecCCCCchhHHHHHHHhhhcchhhHHHHHHhccCCCCCCcCccHHHHHHHHHHHHhhcCChhhhhh
Q 000445 28 AQIQKPKNVQVAVRAKWSGTPLLLEAGELLASERKDLFWEFIEKWLHSEENDADSRTAKDCLKRIVRHGSSLLSESLASL 107 (1498)
Q Consensus 28 ~~~~~s~~V~v~l~A~W~~tPlllE~~E~~A~e~~~~f~~~ld~i~~~~~~~~~~~tdk~~Y~~~l~~~~~~l~~~~~~~ 107 (1498)
.+.+.+|+|+|.+.|+|++||+++|++|++|+|++.+||.|++.+.+..+...+..||..+|+.++++|+.+|+++++++
T Consensus 16 ~~~a~s~~v~~~l~akw~~t~ll~e~sE~l~~e~~elFw~f~~~v~~l~~~~~e~~s~~~~y~~~~~~a~~~ls~~~~~l 95 (1470)
T KOG1879|consen 16 GARAASKNVTVRLAAKWSSTPLLLEASELLAEESNELFWNFVNAVTGLDDDSNETDSDENKYNLISKVAGQVLSPEEVSL 95 (1470)
T ss_pred hhhhcCCceeEEEecCCCCccHHHHHHHHHHhhhhHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhcChHHHHH
Confidence 34567789999999999999999999999999999999999999999876555678999999999999999999999999
Q ss_pred HHHhhhcccchhHHHHHHHHHHhhcCCCCCCCCCccccccCCCcchhhhhhcccccccccCCCCCCCCCcceEEEeCCeE
Q 000445 108 FEFSLTLRSASPRLVLYRQLAEESLSSFPPFDDSNLKNEVGGASEANEKLETKKSDSLLVGVNPKSPGGKCCWVDTGGAL 187 (1498)
Q Consensus 108 l~~~Lslr~~SPrIea~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gk~ 187 (1498)
|+|+||+|+||||||||+|++.+. +|++|.+|+++||+.
T Consensus 96 L~f~lalrs~spriQ~~~qia~e~-----------------------------------------~~~~c~sf~v~~~~~ 134 (1470)
T KOG1879|consen 96 LKFSLALRSYSPRIQAFQQIAAEE-----------------------------------------PPEGCDSFFVLGGEL 134 (1470)
T ss_pred HHHHHHhccccHHHHHHHHHHhhc-----------------------------------------CCCCCceEEEECCee
Confidence 999999999999999999999887 125788999999999
Q ss_pred ecChHHHHHhhcCCCCCCCCCCCCCCcCCcCeeccCCCCCCceEEEEeecCchhHHHHHHHHHHHHHcCceeEEEEEccC
Q 000445 188 FLEVSELLMWLRSPSELTGESFQQPELFDFDHIHAESSISSRTAILYGALGSDCFKEFHINLVQAAKEGKVMYVVRPVLP 267 (1498)
Q Consensus 188 ~c~~~~l~~l~~~~~~~~~~~~~~~~~~~fDhv~~~s~~~~p~vILYg~~~s~~F~~fh~~L~~~a~~Gki~YV~R~~~~ 267 (1498)
+|+++||++++.++. .....+.++.||||+|+++++.|+||||||+|+.+|..||+.|.++|++||++||+||+.+
T Consensus 135 ~c~~~dL~k~l~~~~----~~~s~~~~~~~dhv~p~s~~~~p~~ilYge~gt~~f~~Fh~~l~k~a~~gk~~yv~Rh~~~ 210 (1470)
T KOG1879|consen 135 TCKFDDLQKLLKKAL----TNQSDPKLFSFDHVVPGSNTESPVAILYGELGTIDFRNFHKLLEKLAKNGKINYVFRHFLR 210 (1470)
T ss_pred eecHHHHHHHhhhhh----hcccCcccccccceeccCCCCCcEEEEEcccchHhHHHHHHHHHHHHhcCCeeEEEEeccc
Confidence 999999999987643 1222579999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCcccCCCCCCCccccceeeEEEEeeccccccccccccccccCCCCCCcccccccccchhhhhhccCccchhhH
Q 000445 268 SGCEANVGNCGAVGAKDSLNLGGYGVELALKNMEYKAIDDSMIKEGVTLEDPRTEDLSQEVRGFVFSKLLERKPDLTSEI 347 (1498)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~LsGYGVeL~lK~teY~viDD~~v~~~~~~~~~~~~~~~~ev~GF~f~~L~~~~p~l~~~L 347 (1498)
.+ ..+|++|+||||||+||+|||||+||+.++..+ .+++. .+|+||+|++|+++||++..++
T Consensus 211 ~~------------~~~p~~LsGyGVElaLK~teYka~Ddss~~~~~-----~~e~~-~dv~gf~f~~lk~~~~~l~~~l 272 (1470)
T KOG1879|consen 211 KK------------DSRPVYLSGYGVELALKNTEYKAVDDSSVKKLN-----VEEDL-NDVQGFNFGKLKDRHPDLRGAL 272 (1470)
T ss_pred CC------------CCCceeeecceeEEeecCcceeecccccccccc-----cccch-hhhhhhhhhhccccChHHHhHH
Confidence 74 578999999999999999999999999887321 22232 6799999999999999999999
Q ss_pred HHHHHhhhccccCCCCChhhhhcccHHHHHHHHcCCChHHHHHHHHhccchhhhhhhcccCChhHHHHHHHhhhc-----
Q 000445 348 MSFRDYLLSSTTSETLEVWELKDLGHQTAQRIVHASDPLQSMQEISQNFPSVVSSLSRMKLNDSIKDEIVANQRY----- 422 (1498)
Q Consensus 348 ~~fr~~Ll~~~e~~~Lk~wEl~dLGlqAaq~I~~s~dpL~~L~~isqNFP~~A~~Ls~~~v~~~~~~ei~~N~~~----- 422 (1498)
+.||.||++++|+.|||+||+||||+||||+|+++.++|+.|++|+||||++|++|++++|++++++|+++||+.
T Consensus 273 ~~~r~~lles~el~~Lk~welqdL~~qaaq~i~~~td~L~~mk~i~qNFP~~Ar~Ls~~~Vn~~lr~ei~~nq~~~~~~~ 352 (1470)
T KOG1879|consen 273 ESFRLHLLESDELAPLKVWELQDLGFQAAQKIKSITDALQFMKEISQNFPTHARSLSKQSVNEDLRTEIEENQSKLEAKG 352 (1470)
T ss_pred HHHHHhccCccccccccHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCceEEEEcCcccCCCCCChhHHHHHHHHHHHHHhhhhhcCCChHHHHHhhccCCC-CCCCCeEEEeeCCCeeeeccc
Q 000445 423 MPPGKSLMALNGALINIEDIDLYLLIDLVHQELSLADQFSKLKIPRTITQKLLSTVPP-AESSMFRVDFRSTHVQYLNNL 501 (1498)
Q Consensus 423 ~~~G~~~L~ING~~i~~~~ld~f~Ll~~Lr~E~k~~~~L~~lGl~~~~a~~lL~~~~~-~~~~~~r~D~r~~~IiwlNDI 501 (1498)
++||.++|||||+.++.+++|+|+|+++|++|.+++++|+++|+.+..+.++|+.... .+.+++++|+|+.+|+|+|||
T Consensus 353 v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lgi~~~~l~~~l~l~~~~~~~~~~~~Dir~~~v~~vNdl 432 (1470)
T KOG1879|consen 353 VPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLGIDGEFLSKLLKLDLSKSEKQEYAVDIRSEAVIWVNDL 432 (1470)
T ss_pred CCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhccccCcccccceeeecccccceeeccc
Confidence 8999999999999999999999999999999999999999999999999999975433 236789999999999999999
Q ss_pred cCchhhhhchhhHHHhhccCCCCCcccccccccceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEeeeccccccccc
Q 000445 502 EEDAMYKRWRSNINEILMPVFPGQLRYIRKNLFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEI 581 (1498)
Q Consensus 502 EkD~~Y~~w~~sl~~ll~p~~pGqlp~iRrNl~nlVfviDps~~~~~~~~~~l~~~~~~~~P~R~GlVp~~~~~~~~~~~ 581 (1498)
|+|++|.+||+|++.||+|+||||||+|||||||+||||||+++++++++..+.+|+.+++|+|||+||+.++ .+.
T Consensus 433 EsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~s~~~P~R~G~v~~~nd----~~~ 508 (1470)
T KOG1879|consen 433 ESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFVSHQIPVRIGFVFIAND----DDE 508 (1470)
T ss_pred ccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHhcCCCceEEEEEEEecC----Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 111
Q ss_pred cCCccCCCcccCCCCCccchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCC
Q 000445 582 NGGELHSPVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKA 661 (1498)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~s~~~~~~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1498)
+|. .|.++++.|+|+|+++..|...|+.||.+++...+. ...+..+++...|.+ .++.+
T Consensus 509 -d~~-------------~d~g~av~~af~yi~~~~d~~~Alk~l~~~~~~~~~------~~~~~~e~v~~~~~~-~~~~~ 567 (1470)
T KOG1879|consen 509 -DGV-------------TDLGVAVLRAFNYISEESDNLTALKFLTNIYSDVRS------DEYVLVEHVKGVFEN-TLPNA 567 (1470)
T ss_pred -cch-------------hhHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcc------cchhHHHhhhHHHHh-hcccc
Confidence 332 478999999999999999999999999999866543 223447777777744 34332
Q ss_pred CCCChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCcceEEcceeccCch------HHHHHHHHHHHHHHHHHHHcccc
Q 000445 662 KTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE------EALLNAMNDELQRIQEQVYYGNI 735 (1498)
Q Consensus 662 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~~------~~l~~~i~~e~~~lq~~v~~g~l 735 (1498)
...+.++.++.|+..++++.+|+.++||+. .|+|++||+|++..+ ..+++.|++++.++|++||.|++
T Consensus 568 -----~~~~il~~~s~~d~~~~~~~~fv~~lGl~~-~p~vL~NG~i~~~~~~~~~~e~~i~~~i~~~t~~iQ~av~~G~l 641 (1470)
T KOG1879|consen 568 -----KKDDILGIDSTYDEGRKAGFSFVQELGLDS-LPSVLLNGEIFDHESNAWDLEESILQEIMKDTPFIQRAVYEGKL 641 (1470)
T ss_pred -----chhhhhccccchhhcchHHHHHHHHhCCCc-cCeeeECCeeccccccccchHHHHHHHHHhhhHHHHHHHHcCCC
Confidence 123567788999999999999999999955 899999999999776 38899999999999999999999
Q ss_pred CChhhHHHHHHhc-ccccccCceeecCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCcceEEEEEeeCCCHhHH
Q 000445 736 NSYTDVLEKVLSE-SGINRYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVKPVTHLLAVDVTSKKGM 814 (1498)
Q Consensus 736 ~d~~~~~~~~l~~-~~~~r~N~~i~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lv~Df~s~~g~ 814 (1498)
+|++++++++|.+ ++++|.|++|++..+.-.++..+...+.+...+++++.|++.+ +.....++|+|+|+||++++|+
T Consensus 642 ~d~~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~~k~~~~~~~~~Yl~~~-~~~~~~~vT~wlvaDf~~~~gr 720 (1470)
T KOG1879|consen 642 EDDQNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSSTDKSAVLLKNVNYLTKK-TEESNLPVTIWLVADFESPSGR 720 (1470)
T ss_pred ccchHHHHHHHhCccccccccccccccccchhhHHhhhcchhhhhHHHhhccccccC-chhhccceEEEEEcccCChhHH
Confidence 9999999999998 9999999999984433334444444456678899999999866 4566788999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhhhhhhhhhhcccccccchH
Q 000445 815 KLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFYERTYLLASSATADSTQ 894 (1498)
Q Consensus 815 ~~l~~al~~l~~~~~~~Rv~~ihn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 894 (1498)
++|.+||+++ +++.++||++|.||++........+++.|++++.++..+.+......++.+ +..
T Consensus 721 klL~~al~~~-~~s~~~Ri~~I~np~s~~~~~~~s~~~~i~aal~~~~~~l~~e~~~~~~~~-------------~~~-- 784 (1470)
T KOG1879|consen 721 KLLTNALDYL-KSSKNARIGLIPNPSSESAEGSNSIKRPILAALLFLPAKLAKEEVASHLYK-------------GKN-- 784 (1470)
T ss_pred HHHHHHHHHH-hccccceEEEecCchhhhhcccccccchHHHHHhcCcHhhhHHHHHHHhhc-------------Ccc--
Confidence 9999999998 568899999999998744455667888888888766521111111111111 000
Q ss_pred HHHHHHHHHHhhcCCChHHHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe-cCCCCCCCCHhhHHHH
Q 000445 895 AFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT-FPIDESTFLSHDLSLL 973 (1498)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~i-~~~~~~~f~~~Df~~L 973 (1498)
...++ ...+++|+.++... ....++.+|++.+|+.+|+++|+.|||+| |+..++.|..+||.+|
T Consensus 785 ----------~~~~i-~s~~e~~~~~~~~~----l~~~~~~~~~~vl~l~~~q~~Vv~Ngr~igpl~~~E~f~t~Df~lL 849 (1470)
T KOG1879|consen 785 ----------SDLSI-GSKFEKDLEKLLLF----LKKLHSFIVKEVLGLNSGQRAVVSNGRFIGPLSSSESFNTADFKLL 849 (1470)
T ss_pred ----------cccch-hHHHHHhhhhhhhh----HHhhhhHHHHhhhccCCCcceeeecCeEEEeccchhhhchhhHHHH
Confidence 00111 13456666544322 22356688999999999999999999999 7766799999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhcccCCCCCCCccccccchhhhhhhhhhcccccccCCcccccccccccccceEEeCC--CCc
Q 000445 974 ESVEFKHRIKHIWEIIEEVNWQETYPDIDPDMLTSKFVSDIILFVTSSMAMRDRSSESARFEILSAEYSAVVFNS--ENS 1051 (1498)
Q Consensus 974 ~~~E~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~i~~~~--~~~ 1051 (1498)
+.++..++.++|..++++.. . .+.....++..|++.+....+.++..+.++..++.+|+++.+++ ..+
T Consensus 850 e~~~~~~~~~ki~~~~~~~~-~---------~v~~~~~sd~~~~v~~~~~t~~~s~~r~~~~~~~~~~s~v~~~~~~~~a 919 (1470)
T KOG1879|consen 850 ESMLFSNYSQKISNIIEESE-L---------DVSEDVFSDFLMKVAALMSTQDKSRPRMDFSFLKDEHSVVKFPPDENNA 919 (1470)
T ss_pred HHHhccccchhHHHHHHHhh-h---------cchhhhhhhhhhhhhcccccCCccccccchhhhcCCCceeecCCCCCCc
Confidence 99999999999998888743 1 12245567888999886666666677888888899999999866 456
Q ss_pred eEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEEEccCCCCCccCccceeecccCCCcCCCCCCccccCCceeeccCC
Q 000445 1052 TIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIVLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMP 1131 (1498)
Q Consensus 1052 ~~~v~~ilDPlse~aQk~~~ll~~l~~~~~v~i~i~LnP~~~l~elPlkrFYR~Vl~~~~~Fd~~g~~~~~p~a~F~~lP 1131 (1498)
.|+|+|||||||++||||+|||.+|+++.||+|||+|||+.+++|||||||||||+++++.|+++|....+ .|+|.+||
T Consensus 920 ~idv~aVlDPlsreaQkl~sll~~l~kl~n~~i~i~lnP~~~lse~PlkrfYRyV~~~e~~f~~~g~~~~~-~a~F~nlP 998 (1470)
T KOG1879|consen 920 TIDVLAVLDPLSREAQKLASLLEVLRKLTNVNIRIILNPKSKLSEMPLKRFYRYVLEAELSFSANGSDSDG-VAKFDNLP 998 (1470)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHHHHhcCcceEEEEcCchhhhhccHHHHHHhhcCcccccccCCccccc-eeeecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999988877 89999999
Q ss_pred CCCceeeeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCccc
Q 000445 1132 LSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLV 1210 (1498)
Q Consensus 1132 ~~~llTl~mD~P~sWlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iLiEGha~d~~~-~pprGlqL~L~t~~~~~~~ 1210 (1498)
.++||||+||||++|+|+++.++||||||+|++.+ ++|+|+|||||||+||||+|..+ +|||||||+|||..+|+++
T Consensus 999 ~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~--~~v~A~yele~lLleG~c~d~~~g~pprGlql~Lgt~~~p~i~ 1076 (1470)
T KOG1879|consen 999 ASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTS--SDVTAEYELEYLLLEGHCFDKVSGQPPRGLQLTLGTSANPHIV 1076 (1470)
T ss_pred cCceeEEeecCCCceEeeeccccccchheeeeccC--CchheeeehhhhhccceehhhccCCCCCceEEEeccCCCCeee
Confidence 99999999999999999999999999999999985 58999999999999999999877 9999999999999999999
Q ss_pred ceEEEecceeeeeeeCCceeEEEecCCCCCcceEEeecCCCCcCCCCccEEEEecCCCceEEEEEEecCCccccccccCC
Q 000445 1211 DTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYVLKEDGNVNEDRSLSKRITINDLRGKVVHMEVVKKKGKENEKLLVSS 1290 (1498)
Q Consensus 1211 DTiVMaNlGYFQlkA~PG~w~L~lr~GrS~diy~i~s~~~~~~~~~~~~~v~v~sf~g~~l~~rv~kk~g~e~~dvL~~~ 1290 (1498)
||||||||||||||||||+|.|+||+|||+++|.|.++. |..+..+..+|+|+||+|++|.|+|+|+||||.+++|.+.
T Consensus 1077 DTiVManlGYfQlKanPG~W~L~lr~G~S~d~y~i~s~d-g~~~~~~~~qvvidSf~gk~v~vkV~k~~g~e~edll~~~ 1155 (1470)
T KOG1879|consen 1077 DTIVMANLGYFQLKANPGAWILRLRDGRSSDIYQIVSHD-GTPDQSSDIQVVIDSFRGKVVKVKVSKKPGMEEEDLLSDE 1155 (1470)
T ss_pred eeEEEeccceeEEecCCcceEEEecCCCchhheeeeccc-CCCCcCCCceEEEecCCceEEEEEEeecCCcchhhhhcch
Confidence 999999999999999999999999999999999999855 4444567899999999999999999999999999999861
Q ss_pred cccccccccCCccccccccccccccCCcccchhhhhcccCcccccCceeeEEEeecCcchHHHHHHHHHHHHhcCCCCeE
Q 000445 1291 DEDSHSQAEGHWNSNFLKWASGFIGGSEQSKKEKAAVDHGKVERHGKTINIFSIASGHLYERFLKIMILSVLKNTCRPVK 1370 (1498)
Q Consensus 1291 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~ 1370 (1498)
.+.|.|+|+. +|.|+..+. ++++.+.||||+||+||+|||+|+|||.||++||+++||
T Consensus 1156 ------~~~g~wns~k-----~f~~~~~~~-----------~~~~~~vINIFSvASGHLYERflrIMm~SvlknTktpVK 1213 (1470)
T KOG1879|consen 1156 ------KEEGFWNSIK-----SFTGGLAKS-----------MKKDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTPVK 1213 (1470)
T ss_pred ------hhhhhhhhhh-----hhccccccc-----------ccCccceEEEEeeccccHHHHHHHHHHHHHHhCCCCcee
Confidence 2457899943 333332111 122345799999999999999999999999999999999
Q ss_pred EEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCc
Q 000445 1371 FWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADM 1450 (1498)
Q Consensus 1371 F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl 1450 (1498)
||+|+|+|||+||+.||+|+++|||+||+|+|+||.|||+|+++||++|+|||||||+|||++|+||||+|||+|||+||
T Consensus 1214 FWfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLhqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL 1293 (1470)
T KOG1879|consen 1214 FWFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLHQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADL 1293 (1470)
T ss_pred EEeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhhhhhhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCceEEeecccCCCCCCccccccchhhhhhcCCCCCCCC
Q 000445 1451 GELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIR 1498 (1498)
Q Consensus 1451 ~eL~~~dL~~~~~a~v~~~~~~~~~~g~~yw~~GyW~~~L~grpYHIS 1498 (1498)
.||+++||+|+|||++|||++|.||+||||||+|||++||+|||||||
T Consensus 1294 ~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkYHIS 1341 (1470)
T KOG1879|consen 1294 KELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKYHIS 1341 (1470)
T ss_pred HHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhccCccccc
Confidence 999999999999999999999999999999999999999999999998
No 2
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=100.00 E-value=2.6e-54 Score=472.49 Aligned_cols=205 Identities=46% Similarity=0.743 Sum_probs=186.2
Q ss_pred hhhhhhhhcccccccCCc--ccccccccccccceEEeC---CCCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEE
Q 000445 1012 SDIILFVTSSMAMRDRSS--ESARFEILSAEYSAVVFN---SENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRI 1086 (1498)
Q Consensus 1012 s~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~s~i~~~---~~~~~~~v~~ilDPlse~aQk~~~ll~~l~~~~~v~i~i 1086 (1498)
||..|++++....+...+ ++..+..++..|+++.++ ++.+.++|++||||+||.||||+|||++|+++.||+|+|
T Consensus 1 sD~~~~~~s~l~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~i~v~~vvDPlse~aQkl~sll~~l~~~~~v~i~i 80 (211)
T PF06427_consen 1 SDWFMLVSSLLSSSFHRDSSRVDRFDFLSDNHSSFEVGPKDNDESPIDVVAVVDPLSEEAQKLASLLSVLSELPFVNIRI 80 (211)
T ss_pred CcEEEEeeeeeeccccCccceeeehhccCCCceEEEecCCCCCCccEEEEEEECCCCHHHHHHHHHHHHHHhccCceEEE
Confidence 456677777665554443 344557888889999886 345689999999999999999999999999999999999
Q ss_pred EEccCCCCCccCccceeecccCCCcCCCCCCccccCCceeeccCCCCCceeeeccCCCCeEEeeecccccCCcccccccC
Q 000445 1087 VLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLG 1166 (1498)
Q Consensus 1087 ~LnP~~~l~elPlkrFYR~Vl~~~~~Fd~~g~~~~~p~a~F~~lP~~~llTl~mD~P~sWlV~~~~a~~DLDNI~L~~~~ 1166 (1498)
+|||+.+++|+|||||||||+++++.||++|.++. |.|.|++||.+++||++||+|++|+|+|++|.||||||+|++++
T Consensus 81 ~LnP~~~~~elPlkrFYR~v~~~~~~F~~~G~~~~-p~a~F~~lP~~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~ 159 (211)
T PF06427_consen 81 LLNPTSKLSELPLKRFYRYVLPSEPQFDADGRLIP-PSAVFSNLPSSPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLS 159 (211)
T ss_pred EECCccccCcceeeeEEeecCCcccccCCCCCccC-ceeEEecCcCCceEEecCCCCCceEEEEeecCcCCCceecccCC
Confidence 99999999999999999999999999999999987 99999999999999999999999999999999999999999997
Q ss_pred CCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec
Q 000445 1167 DTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN 1217 (1498)
Q Consensus 1167 ~~~~v~a~yeLe~iLiEGha~d~~~-~pprGlqL~L~t~~~~~~~DTiVMaN 1217 (1498)
++..|+|+||||||||||||+|.++ .|||||||+|++..+++.+|||||||
T Consensus 160 ~~~~v~a~y~Le~iLieG~~~d~~~~~pp~Glql~L~~~~~~~~~DTiVMaN 211 (211)
T PF06427_consen 160 SGTTVEAVYELESILIEGHARDITTGSPPRGLQLQLGTENGPHSVDTIVMAN 211 (211)
T ss_pred CCceEEEEEEEeeEEEEeEEeecCCCCCCCCcEEEEecCCCCcccCceEeCC
Confidence 5446999999999999999999987 99999999999999999999999998
No 3
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.96 E-value=6e-30 Score=290.27 Aligned_cols=160 Identities=77% Similarity=1.460 Sum_probs=151.0
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchh
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1418 (1498)
||||++++|+.|++++++||.||++||+.+++|||+++++|+++++.|+.+.++|+.+++|+.++||.|++.+...++..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~ 80 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRII 80 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhH
Confidence 79999999999999999999999999977899999999999999999999999999999999999999988876655668
Q ss_pred HHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCCCCCccccccchhhhhhcCCCCCCCC
Q 000445 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIR 1498 (1498)
Q Consensus 1419 ~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~~~~g~~yw~~GyW~~~L~grpYHIS 1498 (1498)
|+|+||+++.+||.+++||||||||+||++||.+||++||+|+++|||++|+...++.+.+||+.|||+++|++++||=|
T Consensus 81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS 160 (248)
T cd06432 81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS 160 (248)
T ss_pred HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence 99999999999999999999999999999999999999999999999999988777788999999999999999999844
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.86 E-value=6.6e-22 Score=225.14 Aligned_cols=145 Identities=29% Similarity=0.518 Sum_probs=128.4
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccccccc-ccch
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQRI 1417 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~-~~r~ 1417 (1498)
|||+++|+|++|++++++|+.||++|++.+++|||+++++|++.++.|+.+.+.++++++|+.++|+.+...+.. +.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 799999999999999999999999999888999999999999999999999988899999999998877655443 3445
Q ss_pred hHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCCC----------CCccccccch
Q 000445 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKD----------MDGYRFWRQG 1484 (1498)
Q Consensus 1418 ~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~~----------~~g~~yw~~G 1484 (1498)
.++|.|||++.+|| +++||||||||+||++||.+||++|++++++|||++|..... ..+..|||+|
T Consensus 81 ~~~y~RL~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsG 156 (246)
T cd00505 81 IVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSG 156 (246)
T ss_pred cceeHHHHHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeee
Confidence 68999999999999 899999999999999999999999999999999998864211 1335688998
No 5
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.82 E-value=4.4e-20 Score=218.37 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=124.8
Q ss_pred ceeeEEEeecCcchHHHHHHHHHHHHhcCCC-CeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccc-
Q 000445 1337 KTINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEK- 1414 (1498)
Q Consensus 1337 ~~iNIf~vasd~~Ye~~~~imi~Svl~n~~~-~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~- 1414 (1498)
++|||+. ++|++|.+++++||.||+.||+. +++||||++++|++.++.|..+++.++.+++++.++ +.++......
T Consensus 24 ~~i~Iv~-~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id-~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAY-GIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLIN-CERLKSLPSTK 101 (334)
T ss_pred CceeEEE-ECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhCCcccC
Confidence 5699987 68999999999999999999874 699999999999999999999999999999999987 4555432222
Q ss_pred cchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEe-ecccCC------CCC----Cccccccc
Q 000445 1415 QRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYT-PFCDNN------KDM----DGYRFWRQ 1483 (1498)
Q Consensus 1415 ~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v-~~~~~~------~~~----~g~~yw~~ 1483 (1498)
.....+|+|||++.+||.+++||||||||+||++||.+||++||+++.+||| +.+... ..+ .+.+|+|+
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFNs 181 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFNS 181 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCccccccceec
Confidence 2346899999999999989999999999999999999999999996677776 344321 111 13469999
Q ss_pred h-------hhhhh
Q 000445 1484 G-------FWKDH 1489 (1498)
Q Consensus 1484 G-------yW~~~ 1489 (1498)
| .|++.
T Consensus 182 GVlliNl~~wRe~ 194 (334)
T PRK15171 182 GFLLINIPAWAQE 194 (334)
T ss_pred ceEEEcHHHHHHh
Confidence 9 88765
No 6
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.78 E-value=1.5e-18 Score=197.74 Aligned_cols=144 Identities=24% Similarity=0.385 Sum_probs=125.7
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCC-CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccccc-ccccc
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ-KEKQR 1416 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~-~~~~r 1416 (1498)
|||+. ++|.+|.+++.+|+.|+++|++ .+++|||+++++|++.++.|+.+...++..+++++++++.+...+ ..+..
T Consensus 1 ~~I~~-~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 79 (248)
T cd04194 1 MNIVF-AIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHI 79 (248)
T ss_pred CCEEE-EecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccc
Confidence 68987 6899999999999999999998 579999999999999999999999889999999999977665444 23334
Q ss_pred hhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCC---------CCCccccccch
Q 000445 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK---------DMDGYRFWRQG 1484 (1498)
Q Consensus 1417 ~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~---------~~~g~~yw~~G 1484 (1498)
...+|.|||++.++| +++||||||||+||.+||.+||++|++|+++||++.|.... .-.+..|+|+|
T Consensus 80 ~~~~y~rl~l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsG 155 (248)
T cd04194 80 SYATYYRLLIPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSG 155 (248)
T ss_pred cHHHHHHHHHHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeec
Confidence 568999999999999 89999999999999999999999999999999999886531 12356789999
No 7
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=2.5e-18 Score=200.06 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=129.5
Q ss_pred eeeEEEeecCcchHHHHHHHHHHHHhcCCC-CeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccc
Q 000445 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1416 (1498)
Q Consensus 1338 ~iNIf~vasd~~Ye~~~~imi~Svl~n~~~-~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1416 (1498)
+|||+. |+|++|.++++++|.|+|.||+. .++||+|.++++++++++|..+++.|+..+.++..+......-.+...|
T Consensus 2 ~~~Iv~-a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~ 80 (325)
T COG1442 2 TIPIAF-AFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPPFTKR 80 (325)
T ss_pred cccEEE-EcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhhcccccccc
Confidence 489986 79999999999999999999995 7999999999999999999999999999998888874222221212334
Q ss_pred h-hHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCC----------CCCccccccchh
Q 000445 1417 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK----------DMDGYRFWRQGF 1485 (1498)
Q Consensus 1417 ~-~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~----------~~~g~~yw~~Gy 1485 (1498)
. ..+|.|+|++.+||+. +|+||+|||+||.+|+++||++|++++++|||.++.+-. .-.+.+|+|+|.
T Consensus 81 ~s~~v~~R~fiadlf~~~-dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~ 159 (325)
T COG1442 81 FSKMVLVRYFLADLFPQY-DKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGV 159 (325)
T ss_pred hHHHHHHHHHHHHhcccc-CeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccce
Confidence 3 4789999999999976 999999999999999999999999999999999876521 124567999997
Q ss_pred hhhhcC-CCCCC
Q 000445 1486 WKDHLR-GRPYH 1496 (1498)
Q Consensus 1486 W~~~L~-grpYH 1496 (1498)
|--.|. .|.++
T Consensus 160 llinl~~W~~~~ 171 (325)
T COG1442 160 LLINLKLWREEN 171 (325)
T ss_pred eeehHHHHHHhh
Confidence 765554 34443
No 8
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.72 E-value=1.8e-17 Score=188.94 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=106.3
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccc-c-----
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH-K----- 1410 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~-~----- 1410 (1498)
+||++ ++| +|. .+++++.|++.||+ .+++|||+++++|.+.++.+......++.+++++.++ +..+. .
T Consensus 1 ~hiv~-~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~ 76 (257)
T cd06429 1 IHVVI-FSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFD-DFKLLGKVKVDS 76 (257)
T ss_pred CCEEE-Eec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeC-cHHhhcccccch
Confidence 57876 688 888 48888889988886 4799999999999877777777776679999999996 33221 1
Q ss_pred ---------------cccccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCCCC
Q 000445 1411 ---------------QKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM 1475 (1498)
Q Consensus 1411 ---------------~~~~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~~~ 1475 (1498)
++.+.....+|.||++|.+|| +++||||||||+||++||.|||++||+|+++|||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------- 148 (257)
T cd06429 77 LMQLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------- 148 (257)
T ss_pred hhhhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------
Confidence 011122357899999999999 699999999999999999999999999999999965
Q ss_pred Cccccccch
Q 000445 1476 DGYRFWRQG 1484 (1498)
Q Consensus 1476 ~g~~yw~~G 1484 (1498)
|||+|
T Consensus 149 ----yfNsG 153 (257)
T cd06429 149 ----SWNPG 153 (257)
T ss_pred ----hcccc
Confidence 78888
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.69 E-value=9.1e-17 Score=185.66 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=102.3
Q ss_pred eEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCc-ccccccccccchh
Q 000445 1340 NIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLHKQKEKQRII 1418 (1498)
Q Consensus 1340 NIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp-~~l~~~~~~~r~~ 1418 (1498)
++..|+++++|.+++++||.||+.|+..+++||||++++|.+.++.+.+..+.++.++.|++++.- ..+..........
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~ 81 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSG 81 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhh
Confidence 344445569999999999999999998789999999999999999998888888999999998521 1111001111222
Q ss_pred H-HHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhC--CCCC-CceEEeec
Q 000445 1419 W-AYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKG-RPLAYTPF 1468 (1498)
Q Consensus 1419 ~-~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~--dL~~-~~~a~v~~ 1468 (1498)
. +|.|||++.+||.+++||||||||+||++||.+||++ |+.+ +++|+++.
T Consensus 82 ~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 82 IYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred HHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 2 6799999999998999999999999999999999998 7865 46666653
No 10
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.63 E-value=2.1e-15 Score=173.86 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=111.2
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCC-CChhHHhHHHHHHHHcCCEE--EEEEcCCccccccccccc
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNY-LSPQFKDVIPHMAQEYGFEY--ELITYKWPTWLHKQKEKQ 1415 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~-lS~~~k~~l~~l~~~~~~~i--~~v~~~wp~~l~~~~~~~ 1415 (1498)
|++..|++|++ .+.+.+||.|++.||..+++|||+.+. +++++++.+..++..++..+ .++.+..|.--. ...+.
T Consensus 1 ~~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~-~~ws~ 78 (304)
T cd06430 1 MHLAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNA-AEWKK 78 (304)
T ss_pred CEEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccch-hhhhh
Confidence 46666777877 799999999999999778999999987 99999999999987665544 555555553210 00010
Q ss_pred -chhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhC--CCCCC-ceEEeeccc-------C---CCCCCccccc
Q 000445 1416 -RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCD-------N---NKDMDGYRFW 1481 (1498)
Q Consensus 1416 -r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~--dL~~~-~~a~v~~~~-------~---~~~~~g~~yw 1481 (1498)
-...+|.|||++.+|| +++||||||||+||.+||.|||++ |+++. .+|++|.-. . +..+.|..++
T Consensus 79 l~~~~~y~RL~ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gF 157 (304)
T cd06430 79 LFKPCAAQRLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGV 157 (304)
T ss_pred cccHHHHHHHHHHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCccccccc
Confidence 1136899999999999 899999999999999999999999 99886 555555311 1 2234555678
Q ss_pred cch-------hhhh
Q 000445 1482 RQG-------FWKD 1488 (1498)
Q Consensus 1482 ~~G-------yW~~ 1488 (1498)
|+| .|++
T Consensus 158 NSGVmLmNL~~wR~ 171 (304)
T cd06430 158 NSGVMLMNLTRMRR 171 (304)
T ss_pred ccceeeeeHHHHHh
Confidence 999 7887
No 11
>PLN02718 Probable galacturonosyltransferase
Probab=99.62 E-value=8.2e-16 Score=187.02 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=108.3
Q ss_pred CceeeEEEeecCcchHHHHHHHHHHHHhcC--CCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccc----
Q 000445 1336 GKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH---- 1409 (1498)
Q Consensus 1336 ~~~iNIf~vasd~~Ye~~~~imi~Svl~n~--~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~---- 1409 (1498)
...+||+. .+|+ | ..++|+|.|++.|+ +.++.|||+++.+|...++.+..+...++.+|+++.++--.|+.
T Consensus 311 ~~~~Hia~-~sDN-v-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~ 387 (603)
T PLN02718 311 PDLYHYVV-FSDN-V-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYN 387 (603)
T ss_pred CcceeEEE-EcCC-c-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccch
Confidence 35599976 4554 7 48999999999994 35699999999999999998888887789999999986212332
Q ss_pred ----cc-ccc-cc-hhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC
Q 000445 1410 ----KQ-KEK-QR-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN 1471 (1498)
Q Consensus 1410 ----~~-~~~-~r-~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~ 1471 (1498)
.. ..+ .+ ...+|.||+++.+|| +++||||||||+||.+||.+||++||+|+++|||++|..
T Consensus 388 ~~lk~l~s~~~~~~S~~~y~Rl~ipellp-~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~ 455 (603)
T PLN02718 388 SLLMKQNSHDPRYISALNHARFYLPDIFP-GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLE 455 (603)
T ss_pred hhhhhccccccccccHHHHHHHHHHHHhc-ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccc
Confidence 11 111 12 257899999999999 699999999999999999999999999999999999975
No 12
>PLN02523 galacturonosyltransferase
Probab=99.50 E-value=7.1e-14 Score=168.43 Aligned_cols=127 Identities=20% Similarity=0.312 Sum_probs=100.6
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCc-cccc----c-
Q 000445 1339 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLH----K- 1410 (1498)
Q Consensus 1339 iNIf~vasd~~Ye~~~~imi~Svl~n~~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp-~~l~----~- 1410 (1498)
.|.+ +.||+ ...+.|.|.|++.|.+ .++.|||+++.++..-++..-.+....+..|++..++ . .|+. +
T Consensus 249 ~Hy~-ifSdN--vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ie-df~~ln~~~~pv 324 (559)
T PLN02523 249 YHYA-IFSDN--VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVE-DYKFLNSSYVPV 324 (559)
T ss_pred ceEE-EecCc--chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEee-hhhhcccccchH
Confidence 5554 45665 8889999999999977 4599999999999776666666665558888887775 2 3333 1
Q ss_pred --cccc---------------------------c-chhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCC
Q 000445 1411 --QKEK---------------------------Q-RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKG 1460 (1498)
Q Consensus 1411 --~~~~---------------------------~-r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~ 1460 (1498)
|.+. . -...+|.|++||.+|| +++||||||||+||++||.+||++||+|
T Consensus 325 lk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP-~ldKVLYLD~DVVVq~DLseLw~iDL~g 403 (559)
T PLN02523 325 LRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP-KLHRILFLDDDVVVQKDLTGLWKIDMDG 403 (559)
T ss_pred HHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEecCCHHHHHhCcCCC
Confidence 0000 1 1246799999999999 6999999999999999999999999999
Q ss_pred CceEEeeccc
Q 000445 1461 RPLAYTPFCD 1470 (1498)
Q Consensus 1461 ~~~a~v~~~~ 1470 (1498)
+++|||++|.
T Consensus 404 kv~aAVeDc~ 413 (559)
T PLN02523 404 KVNGAVETCF 413 (559)
T ss_pred ceEEEehhhh
Confidence 9999999995
No 13
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.40 E-value=7.5e-13 Score=149.58 Aligned_cols=142 Identities=22% Similarity=0.304 Sum_probs=100.6
Q ss_pred eEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccc----ccccc
Q 000445 1340 NIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL----HKQKE 1413 (1498)
Q Consensus 1340 NIf~vasd~~Ye~~~~imi~Svl~n~~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l----~~~~~ 1413 (1498)
||+. ++|.+|.+.+.+++.|+++|++ ..++||++++.++++.++.+..+...+.....+...+ ...+ .....
T Consensus 1 ~i~~-~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVL-ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISMLEEFQFNSPS 78 (250)
T ss_dssp -EEE-ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGHHH--TTS-HC
T ss_pred CEEE-EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHhhhhhhhcccc
Confidence 5765 6899999999999999999999 5799999999999999999988776554333333332 2221 11111
Q ss_pred c-cchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC------C------CCCCcccc
Q 000445 1414 K-QRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN------N------KDMDGYRF 1480 (1498)
Q Consensus 1414 ~-~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~------~------~~~~g~~y 1480 (1498)
. .....+|.||+++.+|| +++||||||+|++|.+||.+||+++++|+++||++.|.. . ....+.+|
T Consensus 79 ~~~~~~~~~~rl~i~~ll~-~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLP-DYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPY 157 (250)
T ss_dssp CTCGGGGGGGGGGHHHHST-TSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTS
T ss_pred cccccHHHHHHhhhHHHHh-hcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCccccc
Confidence 2 22357899999999995 799999999999999999999999999999999977210 0 11245789
Q ss_pred ccch
Q 000445 1481 WRQG 1484 (1498)
Q Consensus 1481 w~~G 1484 (1498)
+|.|
T Consensus 158 fNsG 161 (250)
T PF01501_consen 158 FNSG 161 (250)
T ss_dssp EEEE
T ss_pred ccCc
Confidence 9999
No 14
>PLN02742 Probable galacturonosyltransferase
Probab=99.25 E-value=1.3e-11 Score=149.13 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCC--eEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccccc-------------------
Q 000445 1353 FLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ------------------- 1411 (1498)
Q Consensus 1353 ~~~imi~Svl~n~~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~------------------- 1411 (1498)
-..+.|.|...|.+.+ +.|||+++..+-.-....=....--+..++++.++-=.|+...
T Consensus 239 AasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~ 318 (534)
T PLN02742 239 ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFS 318 (534)
T ss_pred hhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcc
Confidence 3456788888887744 8999998754332211111111122667777777511444320
Q ss_pred --------c--c--cc-chhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeeccc
Q 000445 1412 --------K--E--KQ-RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 1470 (1498)
Q Consensus 1412 --------~--~--~~-r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~ 1470 (1498)
. + .. -...+|.|++|+.+|| +++||||||||+||.+||.+||++||+|+++|||++|.
T Consensus 319 ~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp-~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~ 389 (534)
T PLN02742 319 GSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYP-ALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCL 389 (534)
T ss_pred cccccccccccccCcccccHHHHHHHHHHHHhh-ccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchh
Confidence 0 0 01 1246899999999999 69999999999999999999999999999999999994
No 15
>PLN02829 Probable galacturonosyltransferase
Probab=99.20 E-value=2.7e-11 Score=147.63 Aligned_cols=127 Identities=24% Similarity=0.369 Sum_probs=78.9
Q ss_pred eeEEEeecCc-chHHHHHHHHHHHHhcCCCCeEEEEEe--C--CCChhHHhHHHHHHHHcCCEEEEEEcCCccccccccc
Q 000445 1339 INIFSIASGH-LYERFLKIMILSVLKNTCRPVKFWFIK--N--YLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE 1413 (1498)
Q Consensus 1339 iNIf~vasd~-~Ye~~~~imi~Svl~n~~~~v~F~il~--~--~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~ 1413 (1498)
-+||.|.+|. +| ..|-.=.+.|...+..+.|.. + .+....--.++.+....-..+.|-.-. +.--.+..+
T Consensus 360 k~VFHivTD~~ny----~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~~~~~yf~~~~-~~~~~~~k~ 434 (639)
T PLN02829 360 KHVFHIVTDRLNY----AAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQSMIDYYFRAHR-ANSDSNLKY 434 (639)
T ss_pred ceEEEEecCccch----HHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhhhhhhhhhccc-cCccccccc
Confidence 4677777784 44 334444455666666666654 2 233333333444432111111121110 100011111
Q ss_pred ---ccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC
Q 000445 1414 ---KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN 1471 (1498)
Q Consensus 1414 ---~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~ 1471 (1498)
+.....+|.|+|||.+|| +++||||||||+||++||.+||++||+|+++|||++|..
T Consensus 435 r~p~ylS~lnY~RfyLPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~ 494 (639)
T PLN02829 435 RNPKYLSILNHLRFYLPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGE 494 (639)
T ss_pred CCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchh
Confidence 112357899999999999 799999999999999999999999999999999999965
No 16
>PLN02769 Probable galacturonosyltransferase
Probab=99.19 E-value=2.8e-11 Score=148.66 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=50.5
Q ss_pred hHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC
Q 000445 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN 1471 (1498)
Q Consensus 1418 ~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~ 1471 (1498)
..+|.|+|||.+|| +++||||||||+||++||.+||++||+|+++|||++|..
T Consensus 437 ~~nh~RfyIPELLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~ 489 (629)
T PLN02769 437 VFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGV 489 (629)
T ss_pred HHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhh
Confidence 46899999999999 799999999999999999999999999999999999975
No 17
>PLN02659 Probable galacturonosyltransferase
Probab=99.16 E-value=5.5e-11 Score=143.50 Aligned_cols=53 Identities=34% Similarity=0.620 Sum_probs=50.4
Q ss_pred hhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeeccc
Q 000445 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 1470 (1498)
Q Consensus 1417 ~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~ 1470 (1498)
.+.+|.||+|+.+|| +++||||||||+||++||++||++||+|+++|||++|.
T Consensus 328 S~~nY~RL~IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~ 380 (534)
T PLN02659 328 SVMNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCR 380 (534)
T ss_pred eHHHHHHHHHHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccc
Confidence 357899999999999 79999999999999999999999999999999999984
No 18
>PLN02870 Probable galacturonosyltransferase
Probab=99.15 E-value=5.2e-11 Score=143.70 Aligned_cols=54 Identities=30% Similarity=0.629 Sum_probs=50.9
Q ss_pred hhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC
Q 000445 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN 1471 (1498)
Q Consensus 1417 ~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~ 1471 (1498)
.+.+|.||+|+.+|| +++||||||||+||++||.+||++||+|+++|||++|..
T Consensus 327 S~lny~Rl~LPelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~ 380 (533)
T PLN02870 327 SLLNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRG 380 (533)
T ss_pred CHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccc
Confidence 357899999999999 799999999999999999999999999999999999854
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=99.10 E-value=1.2e-10 Score=141.11 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=47.2
Q ss_pred hHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEee
Q 000445 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP 1467 (1498)
Q Consensus 1418 ~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~ 1467 (1498)
+.+|.|++||.+|| +++||||||+|+||++||++||++||+|+++|||.
T Consensus 330 ~lnYlRflIPeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~ 378 (535)
T PLN02867 330 LLNHLRIYIPELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVV 378 (535)
T ss_pred HHHHHHHHHHHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEe
Confidence 57899999999999 79999999999999999999999999999999995
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.08 E-value=2.4e-10 Score=139.29 Aligned_cols=54 Identities=28% Similarity=0.570 Sum_probs=51.2
Q ss_pred hhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccC
Q 000445 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN 1471 (1498)
Q Consensus 1417 ~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~ 1471 (1498)
.+.+|.|++|+.+|| +++||||||||+||.+||.+||++||+|+++|||++|..
T Consensus 459 S~lnY~Rf~LPelLp-~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~ 512 (657)
T PLN02910 459 SMLNHLRFYLPEVYP-KLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKE 512 (657)
T ss_pred hHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccch
Confidence 357899999999999 799999999999999999999999999999999999976
No 21
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.97 E-value=2.6e-09 Score=121.66 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=91.4
Q ss_pred EEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEe-CCCChhHHhHHHHHHHHcCCEEEEEEc-CCcccccccccccchh
Q 000445 1341 IFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITY-KWPTWLHKQKEKQRII 1418 (1498)
Q Consensus 1341 If~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~~-~wp~~l~~~~~~~r~~ 1418 (1498)
-+++++|++|..++.+|+.||++|++ +.+++++. +++|++.++.|+.+ +..+..+.. +++...... ...+..
T Consensus 3 y~t~~~~~~Y~~~a~vl~~SL~~~~~-~~~~~vl~~~~is~~~~~~L~~~----~~~~~~v~~i~~~~~~~~~-~~~~~~ 76 (240)
T cd02537 3 YVTLLTNDDYLPGALVLGYSLRKVGS-SYDLVVLVTPGVSEESREALEEV----GWIVREVEPIDPPDSANLL-KRPRFK 76 (240)
T ss_pred EEEEecChhHHHHHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHHc----CCEEEecCccCCcchhhhc-cchHHH
Confidence 35677899999999999999999987 45666665 57999999998865 334333332 322221111 112345
Q ss_pred HHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeecccCCCCCCccccccch
Q 000445 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQG 1484 (1498)
Q Consensus 1419 ~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~~~~~~~g~~yw~~G 1484 (1498)
.+|.||++..+. ..+||||||||++|.+||.+||++ +..+||++.+.. ..|+|+|
T Consensus 77 ~~~~kl~~~~l~--~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~------~~~fNsG 131 (240)
T cd02537 77 DTYTKLRLWNLT--EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW------PDLFNSG 131 (240)
T ss_pred HHhHHHHhcccc--ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc------cccccce
Confidence 679999999875 589999999999999999999998 567888865421 2466666
No 22
>PLN00176 galactinol synthase
Probab=98.42 E-value=2.1e-06 Score=101.35 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=79.0
Q ss_pred ecCcchHHHHHHHHHHHHhcCC-CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccc-cc-cchhHHH
Q 000445 1345 ASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK-EK-QRIIWAY 1421 (1498)
Q Consensus 1345 asd~~Ye~~~~imi~Svl~n~~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~-~~-~r~~~~y 1421 (1498)
++++.|...+.++..||.++.. .++.+.+ .+.++++.++.|+ +.|..|.-|..--|.. .+. .. .+...+|
T Consensus 30 ~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlV-t~dVp~e~r~~L~----~~g~~V~~V~~i~~~~--~~~~~~~~~~~i~~ 102 (333)
T PLN00176 30 AGNGDYVKGVVGLAKGLRKVKSAYPLVVAV-LPDVPEEHRRILV----SQGCIVREIEPVYPPE--NQTQFAMAYYVINY 102 (333)
T ss_pred ecCcchHHHHHHHHHHHHHhCCCCCEEEEE-CCCCCHHHHHHHH----HcCCEEEEecccCCcc--cccccccchhhhhh
Confidence 4688999999999999987744 3344333 3779998777665 4456664443321211 111 11 1223357
Q ss_pred HHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEeeccc
Q 000445 1422 KILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 1470 (1498)
Q Consensus 1422 ~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~~~~ 1470 (1498)
-+|++..+. +.+||||||||++|.++|.+||+++. + .+|||.+|.
T Consensus 103 tKl~iw~l~--~ydkvlyLDaD~lv~~nid~Lf~~~~-~-~~aAV~dc~ 147 (333)
T PLN00176 103 SKLRIWEFV--EYSKMIYLDGDIQVFENIDHLFDLPD-G-YFYAVMDCF 147 (333)
T ss_pred hhhhhcccc--ccceEEEecCCEEeecChHHHhcCCC-c-ceEEEeccc
Confidence 788888876 69999999999999999999999853 3 688888764
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.85 E-value=0.0001 Score=85.54 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=76.6
Q ss_pred EeecCcchHHHHHHHHHHHHhcCCCCeEEEEE-eCCCChhHHhHHH---HHHHHcCCEEEEEEcCCcccccccccccchh
Q 000445 1343 SIASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIP---HMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1498)
Q Consensus 1343 ~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il-~~~lS~~~k~~l~---~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1418 (1498)
+.+++..|...+-++..|+-++.. +....++ .+.+++.....+. .+...++..+..+..--+ +. ...+..
T Consensus 5 tl~Tn~~YL~gAlvL~~sLr~~gs-~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~----~~-~~~~~~ 78 (278)
T cd06914 5 NYATNADYLCNALILFEQLRRLGS-KAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA----SG-GDAYWA 78 (278)
T ss_pred EEecChhHHHHHHHHHHHHHHhCC-CCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC----CC-CCccHH
Confidence 346789999999999999977655 4444444 4666654333221 112455666666554211 11 112334
Q ss_pred HHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEe
Q 000445 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYT 1466 (1498)
Q Consensus 1419 ~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v 1466 (1498)
.+|.+|.+-.+ + ..+||||||||++|.++|.+|++++.. ..+||+
T Consensus 79 ~~~tKl~~~~l-~-~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap 123 (278)
T cd06914 79 KSLTKLRAFNQ-T-EYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAP 123 (278)
T ss_pred HHHHHHHhccc-c-ceeeEEEecCChhhhcChHHHhcCCcc-cceeee
Confidence 56999999998 3 699999999999999999999999843 345654
No 24
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.53 Score=63.01 Aligned_cols=194 Identities=14% Similarity=0.143 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCcceEEcceeccCchH---HHHHHHHHHHHHHHHHHHccccCChhhHHHHH-Hhccccc
Q 000445 677 TFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSEE---ALLNAMNDELQRIQEQVYYGNINSYTDVLEKV-LSESGIN 752 (1498)
Q Consensus 677 ~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~~~---~l~~~i~~e~~~lq~~v~~g~l~d~~~~~~~~-l~~~~~~ 752 (1498)
+...-+++-|+.+++.|+.......++||...+.+.- .|+..+++|.+.+-+-...| .+...+...+ +......
T Consensus 336 ~lr~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lg--i~~~~l~~~l~l~~~~~~ 413 (1470)
T KOG1879|consen 336 DLRTEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLG--IDGEFLSKLLKLDLSKSE 413 (1470)
T ss_pred HHHHHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHhhccccCccc
Confidence 3334455566777777896666789999988877763 77888888888887666556 2333333222 1111111
Q ss_pred ccCceeecCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCc----c-eEEEEEeeCCCHhHHHHHHHHHHHHhcC
Q 000445 753 RYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVK----P-VTHLLAVDVTSKKGMKLLHEGIRFLIGG 827 (1498)
Q Consensus 753 r~N~~i~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~t~~lv~Df~s~~g~~~l~~al~~l~~~ 827 (1498)
. -+.-+.-....+.|++..........+-+++.-+-.|.-....+ + -++.+|.|..++.+++++..+..+. ..
T Consensus 414 ~-~~~~~Dir~~~v~~vNdlEsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~-s~ 491 (1470)
T KOG1879|consen 414 K-QEYAVDIRSEAVIWVNDLESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFV-SH 491 (1470)
T ss_pred c-cceeeecccccceeecccccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHh-cC
Confidence 1 11111000112334443332111112222222221121111111 2 3445788999999999988887766 44
Q ss_pred CCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchh---hhHHHHHHHH
Q 000445 828 SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHK---KKVLEFLDQL 874 (1498)
Q Consensus 828 ~~~~Rv~~ihn~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l 874 (1498)
...+|+|+|.-..+...+...-+..++..++...+.. ..+..+|.++
T Consensus 492 ~~P~R~G~v~~~nd~~~d~~~d~g~av~~af~yi~~~~d~~~Alk~l~~~ 541 (1470)
T KOG1879|consen 492 QIPVRIGFVFIANDDDEDGVTDLGVAVLRAFNYISEESDNLTALKFLTNI 541 (1470)
T ss_pred CCceEEEEEEEecCCcccchhhHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 5689999997554432222234444555555444333 2334444444
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=95.28 E-value=0.033 Score=65.12 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred EEEeecCcchHHHHHHHHHHHHhc-CCCCeEEEEEe-CCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchh
Q 000445 1341 IFSIASGHLYERFLKIMILSVLKN-TCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1498)
Q Consensus 1341 If~vasd~~Ye~~~~imi~Svl~n-~~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1418 (1498)
|+.++ +..|...+..+|..+-+. |+-+|-+|.-. +.+++++++.|.. ..++.++++. +.............
T Consensus 4 IVi~~-g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~-~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 4 IVITA-GDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDAS-CVIDPDYLGKSFSK 76 (271)
T ss_pred EEEEe-cCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecce-EEeecccccccccc
Confidence 55444 557777777777777543 33578888887 7899999988866 3455566654 22221111110110
Q ss_pred HHHHHHhccccCCCCCCeEEEEeCCeeecCCcHHHHhCC
Q 000445 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMD 1457 (1498)
Q Consensus 1419 ~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~eL~~~d 1457 (1498)
..|.+=.+..++- +.+.|||||+|.|...|+..|++.+
T Consensus 77 ~~~~~K~lA~l~s-sFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 77 KGFQNKWLALLFS-SFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred CCchhhhhhhhhC-CcceEEEEcCCcccccCHHHHhcCc
Confidence 0343344456664 7999999999999999999999854
No 26
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.76 E-value=5 Score=43.16 Aligned_cols=144 Identities=8% Similarity=0.011 Sum_probs=85.7
Q ss_pred ccccceEEEEcCCCcccHHHHHHHHHHHhcc-cceEEEEEeeeccccccccccCCccCCCcccCCCCCccchhHHHHHHH
Q 000445 531 KNLFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 609 (1498)
Q Consensus 531 rNl~nlVfviDps~~~~~~~~~~l~~~~~~~-~P~R~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~f 609 (1498)
..=..+|.+.||..+.-..+-..+..++++. --+||.++|+... ...+...++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~aa~a~ 69 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG------------------------GGEGEPLARAF 69 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc------------------------cccchHHHHHH
Confidence 4456799999999998877777777665543 2467778887643 01234556776
Q ss_pred HHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHH
Q 000445 610 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 689 (1498)
Q Consensus 610 ~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 689 (1498)
+..... |.. ..|...++....... .+..+.+.+.+.. +.. ....+.+.....+..+...++...+..
T Consensus 70 ~aa~~~-~~~--~~~~~~lf~~~~~~~----~~~~~~~~l~~~a-~~~-----Gl~~~~~~~~~~s~~~~~~i~~~~~~~ 136 (178)
T cd03019 70 YAAEAL-GLE--DKLHAALFEAIHEKR----KRLLDPDDIRKIF-LSQ-----GVDKKKFDAAYNSFSVKALVAKAEKLA 136 (178)
T ss_pred HHHHHc-CcH--hhhhHHHHHHHHHhC----CCCCCHHHHHHHH-HHh-----CCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 665443 332 234444433211100 0011122233222 111 123345666677778888888888999
Q ss_pred HHhCCCCCCcceEEcceeccCch
Q 000445 690 FKLGLTKLKCCLLMNGLVSESSE 712 (1498)
Q Consensus 690 ~rlgi~~~~p~vlvNG~~~~~~~ 712 (1498)
+++|+.+ .|.++|||+.+....
T Consensus 137 ~~~gi~g-TPt~iInG~~~~~~~ 158 (178)
T cd03019 137 KKYKITG-VPAFVVNGKYVVNPS 158 (178)
T ss_pred HHcCCCC-CCeEEECCEEEEChh
Confidence 9999955 699999999776543
No 27
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.54 E-value=8.9 Score=40.44 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=77.5
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeeccccccccccCCccCCCcccCCCCCccchhHHHHHHHH
Q 000445 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 610 (1498)
Q Consensus 534 ~nlVfviDps~~~~~~~~~~l~~~~~~---~~P~R~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~f~ 610 (1498)
..|+.+.||..+...++...+..++++ .=-++|-++|+.-. + ..+...+.+..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~---------~---------------~~~~~a~~~~~ 69 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD---------K---------------HSSLRAAMAAE 69 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS---------H---------------HHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc---------c---------------hhHHHHHHHHH
Confidence 478999999999888766665555444 12667777766443 0 11345566666
Q ss_pred HHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHH
Q 000445 611 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 690 (1498)
Q Consensus 611 ~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 690 (1498)
.+.+. | ..+.++.+++......- . .+ ..+.. +.. .....+...+.+.++...+....++.+
T Consensus 70 ~~~~~-~--~~~~~~~~~~~~~~~~~----~--~~-~~i~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF13462_consen 70 CVADQ-G--KYFWFFHELLFSQQENF----E--NK-KDIAA---NAG------GSNEQFNKCLNSDEIKAQLEADSQLAR 130 (162)
T ss_dssp HHHHH-T--HHHHHHHHHHHHHCHST----S--SH-HHHHH---HTT------SHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-h--HHHHHHHHHHHHhhhcc----c--hh-HHHHH---HcC------CCHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 66555 4 55566665443222100 0 01 11110 000 112334445566677888888889999
Q ss_pred HhCCCCCCcceEEcceeccCc
Q 000445 691 KLGLTKLKCCLLMNGLVSESS 711 (1498)
Q Consensus 691 rlgi~~~~p~vlvNG~~~~~~ 711 (1498)
+.||. ..|.++|||+.++..
T Consensus 131 ~~~i~-~tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 131 QLGIT-GTPTFFINGKYVVGP 150 (162)
T ss_dssp HHT-S-SSSEEEETTCEEETT
T ss_pred HcCCc-cccEEEECCEEeCCC
Confidence 99995 469999999998643
No 28
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.84 E-value=13 Score=38.51 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccc-eEEEEEeeeccccccccccCCccCCCcccCCCCCccchhHHHHHHHHHH
Q 000445 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFP-LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 612 (1498)
Q Consensus 534 ~nlVfviDps~~~~~~~~~~l~~~~~~~~P-~R~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~f~~l 612 (1498)
..++.+.||..+.-..+...+..++.. .| +|+=+.+++-. + ..+...+++...+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~~p~~---------~---------------~~~~~~~~~~~~~ 61 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKE-DPDVRVVFKEFPIL---------G---------------ESSVLAARVALAV 61 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEeCCcc---------C---------------cchHHHHHHHHHH
Confidence 468889999999888777777765433 23 34444444211 0 1234445555555
Q ss_pred HHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000445 613 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 692 (1498)
Q Consensus 613 ~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~rl 692 (1498)
.+ .+......|...++..... .+.+.+.... +.. ..+.+.+...+.++.+...++...+...++
T Consensus 62 ~~-~~~~~~~~~~~~lf~~~~~---------~~~~~l~~~a-~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (154)
T cd03023 62 WK-NGPGKYLEFHNALMATRGR---------LNEESLLRIA-KKA-----GLDEAKLKKDMDDPEIEATIDKNRQLARAL 125 (154)
T ss_pred HH-hChhHHHHHHHHHHhcCCC---------CCHHHHHHHH-HHc-----CCCHHHHHHHhhChHHHHHHHHHHHHHHHc
Confidence 54 3555667777777653211 1111122111 111 133445666666777888888888899999
Q ss_pred CCCCCCcceEEcceeccCc
Q 000445 693 GLTKLKCCLLMNGLVSESS 711 (1498)
Q Consensus 693 gi~~~~p~vlvNG~~~~~~ 711 (1498)
||.+ .|.++|||..+...
T Consensus 126 gi~g-tPt~~v~g~~~~G~ 143 (154)
T cd03023 126 GITG-TPAFIIGDTVIPGA 143 (154)
T ss_pred CCCc-CCeEEECCEEecCC
Confidence 9965 69999999987643
No 29
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=83.96 E-value=3.4 Score=38.71 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=37.5
Q ss_pred EEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeee-eCCceeEEEe
Q 000445 1182 LTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMK-VSPGVWYLQL 1234 (1498)
Q Consensus 1182 iEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVMaNlGYFQlk-A~PG~w~L~l 1234 (1498)
|.|.-+|.++.|..|..+.|.+..+... .+.+=..-|+|.|. ..||-|.|.+
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~-~~~~Td~~G~f~~~~l~~g~Y~l~v 54 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTV-YTTTTDSDGRFSFEGLPPGTYTLRV 54 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTEC-CEEE--TTSEEEEEEE-SEEEEEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCE-EEEEECCCceEEEEccCCEeEEEEE
Confidence 7899999866999999999987655543 44444444999998 8999999987
No 30
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=78.35 E-value=5.2 Score=42.25 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.4
Q ss_pred CeeccCCCCCCceEEEEeecCchhHHHHHHHHHHH----HHcCceeEEEEEccCC
Q 000445 218 DHIHAESSISSRTAILYGALGSDCFKEFHINLVQA----AKEGKVMYVVRPVLPS 268 (1498)
Q Consensus 218 Dhv~~~s~~~~p~vILYg~~~s~~F~~fh~~L~~~----a~~Gki~YV~R~~~~~ 268 (1498)
+.++| .....++|+.|.|+..+--..||..+.+. ...|+++|++|+++..
T Consensus 4 ~~~~G-~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 4 DPTIG-NPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEES--TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCeec-CCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 56676 33345689999999999988898888543 2369999999999765
No 31
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.42 E-value=1.1e+02 Score=32.86 Aligned_cols=143 Identities=9% Similarity=0.061 Sum_probs=68.1
Q ss_pred CcceEEEEEeeCCCHhHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhh
Q 000445 797 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 876 (1498)
Q Consensus 797 ~~~~t~~lv~Df~s~~g~~~l~~al~~l~~~~~~~Rv~~ihn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 876 (1498)
..++++..+.||.++-....-...-+.+++...++|+.++|.+..... .....+++.++.. .. ....+...+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~aa~a~~aa~~-~~---~~~~~~~~lf~ 87 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGE--GEPLARAFYAAEA-LG---LEDKLHAALFE 87 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccccc--chHHHHHHHHHHH-cC---cHhhhhHHHHH
Confidence 346888899999999666655544444444445788887775532211 1233333333221 11 11122222222
Q ss_pred hhhhhhhhcccccccchHHHHHHHHHHHhhcCCChHHHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 000445 877 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 956 (1498)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~ 956 (1498)
..... +....+ .+.+.+.+...+++.+.+...+.+ ......+...... .+.+|+. |.+++++||+.
T Consensus 88 ~~~~~--------~~~~~~-~~~l~~~a~~~Gl~~~~~~~~~~s---~~~~~~i~~~~~~-~~~~gi~-gTPt~iInG~~ 153 (178)
T cd03019 88 AIHEK--------RKRLLD-PDDIRKIFLSQGVDKKKFDAAYNS---FSVKALVAKAEKL-AKKYKIT-GVPAFVVNGKY 153 (178)
T ss_pred HHHHh--------CCCCCC-HHHHHHHHHHhCCCHHHHHHHHhC---HHHHHHHHHHHHH-HHHcCCC-CCCeEEECCEE
Confidence 11000 000000 122334445566766666554332 1222222222222 3345765 88999999999
Q ss_pred ecC
Q 000445 957 TFP 959 (1498)
Q Consensus 957 i~~ 959 (1498)
+..
T Consensus 154 ~~~ 156 (178)
T cd03019 154 VVN 156 (178)
T ss_pred EEC
Confidence 854
No 32
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.58 E-value=87 Score=34.00 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=82.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEeeeccccccccccCCccCCCc---------------cc-----CC
Q 000445 535 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPV---------------AE-----DD 594 (1498)
Q Consensus 535 nlVfviDps~~~~~~~~~~l~~~~~~~~P~R~GlVp~~~~~~~~~~~~~~~~~~~~---------------~~-----~~ 594 (1498)
.|+|+.|+.++-..-....+..+.+..-.++|=..|+.=. +.....+|..+... .. ..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~ 78 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR--PDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNF 78 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS--THHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc--cccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccC
Confidence 4789999999988776666776654444566666666422 11111111100000 00 00
Q ss_pred CCCccchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhc
Q 000445 595 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 674 (1498)
Q Consensus 595 ~~~~~~~s~~~~~~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1498)
.......+....++++++.+. | ....|...++...-.. ..+.-+.+.+.+.+ ++. ....+.++..+.
T Consensus 79 ~~~~~~~s~~a~~~~~~a~~~-~--~~~~~~~al~~a~~~~----~~~i~~~~vl~~~~-~~~-----Gld~~~~~~~~~ 145 (193)
T PF01323_consen 79 PPPFPGNSRPAHRAAYAAQEQ-G--KADAFADALFRAYFVE----GRDISDPDVLAEIA-EEA-----GLDPDEFDAALD 145 (193)
T ss_dssp SSTHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHTS----ST-TSSHHHHHHHH-HHT-----T--HHHHHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHhc----ccCCCCHHHHHHHH-HHc-----CCcHHHHHHHhc
Confidence 000001345556666666555 3 4445555444322110 01112223333333 222 134456677777
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCCcceEEcce
Q 000445 675 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGL 706 (1498)
Q Consensus 675 ~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~ 706 (1498)
++.+...+.+..+-..++|+.+ .|.++|||.
T Consensus 146 ~~~~~~~~~~~~~~a~~~gv~G-vP~~vv~g~ 176 (193)
T PF01323_consen 146 SPEVKAALEEDTAEARQLGVFG-VPTFVVNGK 176 (193)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSS-SSEEEETTT
T ss_pred chHHHHHHHHHHHHHHHcCCcc-cCEEEECCE
Confidence 7788888888888889999965 699999999
No 33
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=73.50 E-value=16 Score=37.47 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccccC
Q 000445 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1498)
Q Consensus 1351 e~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~L~ 1430 (1498)
+..+.-++.|+++.+..+..++|++++-+++..+.+..+.+ .+..++++...... ....+.. ..+...
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~---------g~~~~~n-~~~~~a- 77 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENL---------GFSAARN-RGIKHA- 77 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCS---------HHHHHHH-HHHHH--
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccc---------ccccccc-cccccc-
Confidence 78888999999988667799999999889999999988876 56677777765210 1111111 112222
Q ss_pred CCCCCeEEEEeCCeeecCC-cHHHHhC
Q 000445 1431 PLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1498)
Q Consensus 1431 P~~v~KvIYLD~D~iv~~d-l~eL~~~ 1456 (1498)
.=+-|+++|+|.++..+ +.+|++.
T Consensus 78 --~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 78 --KGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp ---SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred --ceeEEEEeCCCceEcHHHHHHHHHH
Confidence 12489999999998876 7777743
No 34
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=73.25 E-value=36 Score=32.37 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.7
Q ss_pred EEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec-ceeeeeeeCCceeEEEe
Q 000445 1182 LTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN-LGYWQMKVSPGVWYLQL 1234 (1498)
Q Consensus 1182 iEGha~d~~~-~pprGlqL~L~t~~~~~~~DTiVMaN-lGYFQlkA~PG~w~L~l 1234 (1498)
|.|.-.|..+ .|..|+-+.+.+.. .-+++| -|+|.|++++|-+.|.+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~------~~~~Td~~G~F~i~~~~g~~~l~i 50 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK------KGTVTDENGRFSIKLPEGDYTLKI 50 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc------ceEEECCCeEEEEEEcCCCeEEEE
Confidence 6788889885 99999999998764 223333 39999999999999987
No 35
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=72.85 E-value=20 Score=34.47 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=46.2
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000445 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1498)
Q Consensus 1179 ~iLiEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVMaNlGYFQlkA~PG~w~L~l 1234 (1498)
-.+|.|... ....|..|--.-|.++++.-+.+...-++ |=|-|=|.||.|.++.
T Consensus 7 e~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~-G~FRFfaapG~WtvRa 60 (85)
T PF07210_consen 7 ETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSAT-GDFRFFAAPGSWTVRA 60 (85)
T ss_pred eEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCC-ccEEEEeCCCceEEEE
Confidence 568999987 44589999999999988887777777777 9999999999999985
No 36
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=65.79 E-value=39 Score=33.65 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccccC
Q 000445 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1498)
Q Consensus 1351 e~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~L~ 1430 (1498)
.+.+..++.|+++.+.....++|+++.-+++..+.+..+... ...+..+... .. .....+.. ..+...
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-------~g~~~~~~-~~~~~~- 76 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINE--EN-------QGLAAARN-AGLKAA- 76 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEec--CC-------CChHHHHH-HHHHHh-
Confidence 788999999999887667899999999888888887777643 1122222221 00 01111111 111111
Q ss_pred CCCCCeEEEEeCCeeecCCcH
Q 000445 1431 PLSLEKVIFVDADQVVRADMG 1451 (1498)
Q Consensus 1431 P~~v~KvIYLD~D~iv~~dl~ 1451 (1498)
..+.++++|+|.++..+.-
T Consensus 77 --~~d~v~~~d~D~~~~~~~~ 95 (156)
T cd00761 77 --RGEYILFLDADDLLLPDWL 95 (156)
T ss_pred --cCCEEEEECCCCccCccHH
Confidence 5789999999999876533
No 37
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=63.60 E-value=3.2 Score=48.38 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=27.1
Q ss_pred CCCeEEEEeCCeeecCCcHHHHhCCCCCCceEEee
Q 000445 1433 SLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP 1467 (1498)
Q Consensus 1433 ~v~KvIYLD~D~iv~~dl~eL~~~dL~~~~~a~v~ 1467 (1498)
..|||||||+|.||+.++.+|++... +-+++-|
T Consensus 167 EyDRvifLDsDaivlknmDklFd~Pv--yef~a~p 199 (368)
T COG5597 167 EYDRVIFLDSDAIVLKNMDKLFDYPV--YEFAAAP 199 (368)
T ss_pred hhceEEEeccchHHhhhhHHHhcchh--hhhccCC
Confidence 58999999999999999999998772 3345554
No 38
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=62.58 E-value=62 Score=33.09 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhcc
Q 000445 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1427 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld 1427 (1498)
.+-++.+..++.|+++.+..+..++|+++.-++...+.+......+...+.++.-. .... ...-..++.+.
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~--~~~g---~~~~~n~~~~~---- 76 (180)
T cd06423 6 YNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDK--ENGG---KAGALNAGLRH---- 76 (180)
T ss_pred cChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEec--ccCC---chHHHHHHHHh----
Confidence 34568999999999988766789999999888877777776655442223322221 1100 00001122222
Q ss_pred ccCCCCCCeEEEEeCCeeecCC-cHHHH
Q 000445 1428 VIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1498)
Q Consensus 1428 ~L~P~~v~KvIYLD~D~iv~~d-l~eL~ 1454 (1498)
. .-+-|+++|+|.++..+ +.+++
T Consensus 77 -~---~~~~i~~~D~D~~~~~~~l~~~~ 100 (180)
T cd06423 77 -A---KGDIVVVLDADTILEPDALKRLV 100 (180)
T ss_pred -c---CCCEEEEECCCCCcChHHHHHHH
Confidence 1 45789999999988654 66663
No 39
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=61.61 E-value=27 Score=36.72 Aligned_cols=60 Identities=25% Similarity=0.493 Sum_probs=45.0
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCC--CcccceEE---EecceeeeeeeCCceeEEEec-CCC
Q 000445 1179 ALVLTGHCSEKDHEPPQGLQLILGTKST--PHLVDTLV---MANLGYWQMKVSPGVWYLQLA-PGR 1238 (1498)
Q Consensus 1179 ~iLiEGha~d~~~~pprGlqL~L~t~~~--~~~~DTiV---MaNlGYFQlkA~PG~w~L~lr-~Gr 1238 (1498)
+++|.|==.|-.+.|..|-+++|....+ .++..|.. =.+-|||=|.+.||.|.+.|. +||
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~g~ 67 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVEGR 67 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEECCC
Confidence 4778888888888999999999975432 23333332 256799999999999999986 444
No 40
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=55.77 E-value=23 Score=36.72 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=35.6
Q ss_pred CCceEEEEeecCchhHHHHHHHHHHH-HHcCceeEEEEEccCC
Q 000445 227 SSRTAILYGALGSDCFKEFHINLVQA-AKEGKVMYVVRPVLPS 268 (1498)
Q Consensus 227 ~~p~vILYg~~~s~~F~~fh~~L~~~-a~~Gki~YV~R~~~~~ 268 (1498)
..++++.|.|+..+--+.||..+.+. .+.|++++++|++|..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~~ 47 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPIL 47 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCcc
Confidence 45689999999999999999999775 4569999999999754
No 41
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=53.37 E-value=68 Score=42.57 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=71.1
Q ss_pred eeeeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEE
Q 000445 1136 LTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVM 1215 (1498)
Q Consensus 1136 lTl~mD~P~sWlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iLiEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVM 1215 (1498)
|+|.+..|..|--+|..-..-.|-- .+.= ..+=+.+|.+...-|.|..--..+-+|+|++.+|++..++ +..|.+=
T Consensus 78 yiLkIspP~GwsfePd~Vel~vDGk--td~C-s~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~~-iast~T~ 153 (1165)
T KOG1948|consen 78 YILKISPPAGWSFEPDSVELKVDGK--TDAC-SLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQEDP-IASTKTE 153 (1165)
T ss_pred EEEEecCCCCccccCceEEEEeccc--cccc-cCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccCc-ceeeEec
Confidence 9999999999999986555443310 0000 1223457888888888887655557999999999988555 7788888
Q ss_pred ecceeeeee-eCCceeEEEecCCC
Q 000445 1216 ANLGYWQMK-VSPGVWYLQLAPGR 1238 (1498)
Q Consensus 1216 aNlGYFQlk-A~PG~w~L~lr~Gr 1238 (1498)
++ |=|-|+ +-||-|.++--.++
T Consensus 154 ~~-Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 154 DG-GKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred CC-CeEEEEecCCCceEEeccCcc
Confidence 88 888877 99999998754433
No 42
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.53 E-value=1e+02 Score=33.39 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccc
Q 000445 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1498)
Q Consensus 1349 ~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~ 1428 (1498)
+-+..+..++.||+..+..++.++|++++=+++..+.++.++.+++..+.++... . ......+....+
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~-------~--~~G~~~~~n~g~--- 75 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNG-------K--NLGVARNFESLL--- 75 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCC-------C--CccHHHHHHHHH---
Confidence 4468899999999987766799999999988888888888887765444443332 0 001111111111
Q ss_pred cCCCCCCeEEEEeCCeeecC-CcHHHHhC
Q 000445 1429 IFPLSLEKVIFVDADQVVRA-DMGELYDM 1456 (1498)
Q Consensus 1429 L~P~~v~KvIYLD~D~iv~~-dl~eL~~~ 1456 (1498)
.. ..-+-|+++|+|-+... .+..+++.
T Consensus 76 ~~-~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 QA-ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred Hh-CCCCEEEEECCCcccChhHHHHHHHH
Confidence 11 24688999999976654 48888876
No 43
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.80 E-value=2.2e+02 Score=30.98 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=76.1
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeecccccc--cc------------c-cCCccCCCcccCCC
Q 000445 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKS--IE------------I-NGGELHSPVAEDDS 595 (1498)
Q Consensus 534 ~nlVfviDps~~~~~~~~~~l~~~~~~---~~P~R~GlVp~~~~~~~~--~~------------~-~~~~~~~~~~~~~~ 595 (1498)
+++.|+.||.++-.......+..+.++ ++.+++=+.++...+.+. .. . ..|. +... ....
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQ-PFGE-DYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCC-ccCc-hhHh
Confidence 357899999999876665666655444 788886555554431100 00 0 0010 0000 0000
Q ss_pred C-CccchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcc-cCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhh
Q 000445 596 P-VNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRME-SADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLE 673 (1498)
Q Consensus 596 ~-~~~~~s~~~~~~f~~l~~~~g~~~a~~FL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1498)
. ...-.+....+++....+. |......|+..+....-. +.+ ..+.+.+.+.. +.. ....+.+....
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~-~~~~~~~~~~~l~~a~~~~~~~-----i~~~~~l~~ia-~~~-----Gld~~~~~~~~ 146 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQ-GPERLLEMLKAIQRAHYVEGRD-----LADTEVLRELA-IEL-----GLDVEEFLEDF 146 (193)
T ss_pred cccCCCCchHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHcCCC-----CCCHHHHHHHH-HHc-----CCCHHHHHHHH
Confidence 0 0000133344544454433 555566777766543211 111 11122222222 111 12233455556
Q ss_pred ccchhhHHHHHHHHHHHHhCCCCCCcceEEc
Q 000445 674 KEKTFMDQSQESSMFVFKLGLTKLKCCLLMN 704 (1498)
Q Consensus 674 ~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvN 704 (1498)
.+..+...+....+...++|+.+ .|.++|+
T Consensus 147 ~s~~~~~~l~~~~~~a~~~gv~g-~Ptfvv~ 176 (193)
T cd03025 147 QSDEAKQAIQEDQKLARELGING-FPTLVLE 176 (193)
T ss_pred cChHHHHHHHHHHHHHHHcCCCc-cCEEEEE
Confidence 66677778888788888999976 4666664
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.15 E-value=76 Score=34.52 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccc
Q 000445 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1498)
Q Consensus 1349 ~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~ 1428 (1498)
+-+..+..++.||++.+..+..+.|++++-++...+.+..+...++ +.++... .-... ......+....
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~--~n~g~---~~~~n~~~~~a---- 75 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLP--ENLGG---AGGFYEGVRRA---- 75 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECc--cccch---hhHHHHHHHHH----
Confidence 4468899999999987665678999999988887777777665443 3343332 10000 00111222211
Q ss_pred cCCCCCCeEEEEeCCeeecCC-cHHHHh
Q 000445 1429 IFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1498)
Q Consensus 1429 L~P~~v~KvIYLD~D~iv~~d-l~eL~~ 1455 (1498)
+ ....+-++++|+|.++..+ +.+|++
T Consensus 76 ~-~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 76 Y-ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred h-ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 1 3367899999999988653 444443
No 45
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=46.90 E-value=3e+02 Score=30.83 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=35.5
Q ss_pred ChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCcceEEcceeccC
Q 000445 665 PQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSES 710 (1498)
Q Consensus 665 ~~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~ 710 (1498)
..+.++..+.+..+...+....+-.+++||++ .|.++|||+.+-.
T Consensus 136 d~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g-tPtfiInGky~v~ 180 (207)
T PRK10954 136 KGEDYDAAWNSFVVKSLVAQQEKAAADLQLRG-VPAMFVNGKYMVN 180 (207)
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHcCCCC-CCEEEECCEEEEc
Confidence 34566777777788888888888889999955 6999999998643
No 46
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=46.10 E-value=1.4e+02 Score=33.69 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred eeeEEEeecCcchHHHHHHHHHHHHhcCCCC--eEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCccccccccccc
Q 000445 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1498)
Q Consensus 1338 ~iNIf~vasd~~Ye~~~~imi~Svl~n~~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1415 (1498)
.+=|+.. .++-+..+..++.|+++.+..+ +.+.|+++.-++...+.++.+.+. .+.++... .. +....
T Consensus 30 ~isVvip--~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~--~~---~g~~~ 99 (251)
T cd06439 30 TVTIIIP--AYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFP--ER---RGKAA 99 (251)
T ss_pred EEEEEEe--cCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcC--CC---CChHH
Confidence 3555543 3556788999999999765533 789999999888888888777654 34444432 11 10000
Q ss_pred chhHHHHHHhccccCCCCCCeEEEEeCCeeecCC-cHHHHhC
Q 000445 1416 RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1498)
Q Consensus 1416 r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~d-l~eL~~~ 1456 (1498)
-...+.+.. .-|=|+++|+|.+...+ +.+|++.
T Consensus 100 a~n~gi~~a--------~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 100 ALNRALALA--------TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHHc--------CCCEEEEEccccCcCHHHHHHHHHH
Confidence 011222221 12789999999987654 7777744
No 47
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.09 E-value=1.3e+02 Score=30.89 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccccC
Q 000445 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1498)
Q Consensus 1351 e~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~L~ 1430 (1498)
...+.-++.|+...+..+..+.|++++-.+...+.+..... .+.++... ... ....+. ..-+...
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~--~~~-------g~~~a~-n~~~~~~- 73 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNG--ENL-------GFGAGN-NQGIREA- 73 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecC--CCc-------ChHHHh-hHHHhhC-
Confidence 78889999999987766689999999877777776654432 34444332 111 111111 1111211
Q ss_pred CCCCCeEEEEeCCeeecCC-cHHHHh
Q 000445 1431 PLSLEKVIFVDADQVVRAD-MGELYD 1455 (1498)
Q Consensus 1431 P~~v~KvIYLD~D~iv~~d-l~eL~~ 1455 (1498)
.-+-|+|+|+|.+...+ +..+++
T Consensus 74 --~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 74 --KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred --CCCEEEEECCCcEECccHHHHHHH
Confidence 56899999999987655 666665
No 48
>PRK11204 N-glycosyltransferase; Provisional
Probab=41.85 E-value=1.5e+02 Score=36.59 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=66.0
Q ss_pred eeeEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccc-
Q 000445 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR- 1416 (1498)
Q Consensus 1338 ~iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r- 1416 (1498)
.+-|+..+. |.+..+..++.|+++.+-.+..++|++++-+++..+.++.+..++. +++++... .. .-+..
T Consensus 55 ~vsViIp~y--ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~--~n----~Gka~a 125 (420)
T PRK11204 55 GVSILVPCY--NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLA--EN----QGKANA 125 (420)
T ss_pred CEEEEEecC--CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcC--CC----CCHHHH
Confidence 466765444 4467889999999976555789999999988888888888887653 45555532 10 00110
Q ss_pred hhHHHHHHhccccCCCCCCeEEEEeCCeeecCC-cHHHH
Q 000445 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1498)
Q Consensus 1417 ~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~d-l~eL~ 1454 (1498)
...+... ..-|-|+++|+|.++..| +.++.
T Consensus 126 ln~g~~~--------a~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 126 LNTGAAA--------ARSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred HHHHHHH--------cCCCEEEEECCCCCCChhHHHHHH
Confidence 1122221 246899999999987655 56665
No 49
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=38.58 E-value=3e+02 Score=30.20 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=63.7
Q ss_pred EEEcCCCcccHHHHHHHHHHHh-cccceEEEEEeeeccccccccccCCccCCCcccCCCC-CccchhHHHHHHHHHHHHh
Q 000445 538 YVLDPATVCGLEVIDMIMSLYE-NHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSP-VNEDISSLIIRLFLFIKES 615 (1498)
Q Consensus 538 fviDps~~~~~~~~~~l~~~~~-~~~P~R~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~f~~l~~~ 615 (1498)
+++||-......+=..+.++.. -+-=++|=+||...- +.........+. ....+ .....+.-.+...|...+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~y~a~la~kAA~~ 76 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLM--PDINDFMPRMPI---NGDFWRNEPRSSSYPACLAYKAAQL 76 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS---S--SB--H-------TTHHHS--BS--HHHHHHHHHHHT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccch--HHHHHHHHhcCC---CHHHhcCCCCCCchHHHHHHHHHHH
Confidence 5789998887776555655522 121145555666542 111111000000 00000 0011223344455565666
Q ss_pred hChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHhCCC
Q 000445 616 HGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLT 695 (1498)
Q Consensus 616 ~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~ 695 (1498)
.|.+.+..||.++.+........+. +.+.+.+.. +++ ....+.|.+-..++...+....=++..+.+||.
T Consensus 77 qg~k~~~~fL~~lQ~a~~~~~~~~s----~~~~l~~iA-~~~-----gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~I~ 146 (176)
T PF13743_consen 77 QGKKKARRFLRALQEALFLEGKNYS----DEELLLEIA-EEL-----GLDVEMFKEDLHSDEAKQAFQEDQQLAREMGIT 146 (176)
T ss_dssp TT-H--HHHHHHHHHHHHTS---TT----SHHHHHHHH-HHT-----T--HHHHHHHHTSHHHHHHHHHHHHHHHHTT-S
T ss_pred hChhhHHHHHHHHHHHHHhcCCCCC----HHHHHHHHH-HHh-----CCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCC
Confidence 7999999999988754422111111 112222221 221 122334444444445555556667888899997
Q ss_pred CCCcceEEc
Q 000445 696 KLKCCLLMN 704 (1498)
Q Consensus 696 ~~~p~vlvN 704 (1498)
+.++-|++|
T Consensus 147 ~~Ptlvi~~ 155 (176)
T PF13743_consen 147 GFPTLVIFN 155 (176)
T ss_dssp SSSEEEEE-
T ss_pred CCCEEEEEe
Confidence 655556667
No 50
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=35.79 E-value=2.2e+02 Score=30.82 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=34.9
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCcceEEcceeccCc
Q 000445 666 QDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESS 711 (1498)
Q Consensus 666 ~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~ 711 (1498)
.+.+...+.++.+...+++..+-..++|+.+ .|.++|||+.+-..
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~g-vPtfvv~g~~~~G~ 181 (192)
T cd03022 137 ADELLAAADDPAVKAALRANTEEAIARGVFG-VPTFVVDGEMFWGQ 181 (192)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHcCCCc-CCeEEECCeeeccc
Confidence 3456666777788888888888888999965 69999999987533
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=35.66 E-value=2e+02 Score=30.55 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHH---hcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhc
Q 000445 1350 YERFLKIMILSVL---KNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFL 1426 (1498)
Q Consensus 1350 Ye~~~~imi~Svl---~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfl 1426 (1498)
.+..+...+.||. ..+..++.+.|++++-++...+.++.+..++. ++.++... . +. ....+....+.
T Consensus 8 ~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~-~----n~----G~~~a~n~g~~ 77 (181)
T cd04187 8 EEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLS-R----NF----GQQAALLAGLD 77 (181)
T ss_pred chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEec-C----CC----CcHHHHHHHHH
Confidence 3455555555554 33335689999999988888888887776553 45555543 0 00 11122222211
Q ss_pred cccCCCCCCeEEEEeCCeeecC-CcHHHHhC
Q 000445 1427 DVIFPLSLEKVIFVDADQVVRA-DMGELYDM 1456 (1498)
Q Consensus 1427 d~L~P~~v~KvIYLD~D~iv~~-dl~eL~~~ 1456 (1498)
.. .-+=|+++|+|..... .+..+++.
T Consensus 78 -~a---~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 78 -HA---RGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred -hc---CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 11 2378999999987644 57888876
No 52
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=34.56 E-value=1.7e+02 Score=34.42 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=64.0
Q ss_pred cCceeeEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcC-Cccccccc
Q 000445 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYK-WPTWLHKQ 1411 (1498)
Q Consensus 1335 ~~~~iNIf~vasd~~Ye~~~~imi~Svl~n~~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~-wp~~l~~~ 1411 (1498)
.+-+|-|.++|.| .|..++.-.+.|-=+|== .++++||+.+.-+. ++.+.-.-+.++..+.+. -..| |
T Consensus 32 ~n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~-----~p~v~lg~~r~~~V~~v~~~~~W---~ 102 (271)
T cd02515 32 QNITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA-----VPEVELGPGRRLTVLKIAEESRW---Q 102 (271)
T ss_pred cCCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc-----CcccccCCCceeEEEEeccccCC---c
Confidence 3456888888877 788899999999877633 57999999974221 333332224455555552 0122 2
Q ss_pred ccccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcH
Q 000445 1412 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG 1451 (1498)
Q Consensus 1412 ~~~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~ 1451 (1498)
...-+++.++...-...++ .++|-+.++|+|++..+.+.
T Consensus 103 ~~sl~Rm~~~~~~~~~~~~-~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 103 DISMRRMKTLADHIADRIG-HEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEeeCCceEeecCC
Confidence 1111222232222222333 47999999999999887654
No 53
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=33.87 E-value=3.4e+02 Score=30.23 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEeCCCChh-HHhHHHHHHHHcCCEEEEEEcCCcccccccccccc-hhHHHHHHhccc
Q 000445 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQ-FKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDV 1428 (1498)
Q Consensus 1351 e~~~~imi~Svl~n~~~~v~F~il~~~lS~~-~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~rLfld~ 1428 (1498)
...+..++.||++.+-.++.++|++++-++. ..+.+..+.++++..+.++... +.. ..+.. ...+...
T Consensus 11 ~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~~----G~~~~a~n~g~~~----- 80 (236)
T cd06435 11 PEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PLP----GAKAGALNYALER----- 80 (236)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CCC----CCchHHHHHHHHh-----
Confidence 3678899999986654568999999876654 3466777776776677766554 110 11111 1223222
Q ss_pred cCCCCCCeEEEEeCCeeecC-CcHHHHhCCCCCCceEEe
Q 000445 1429 IFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYT 1466 (1498)
Q Consensus 1429 L~P~~v~KvIYLD~D~iv~~-dl~eL~~~dL~~~~~a~v 1466 (1498)
.- .+-|=|+++|+|.++.. -|.++... +.+.-++++
T Consensus 81 a~-~~~d~i~~lD~D~~~~~~~l~~l~~~-~~~~~~~~v 117 (236)
T cd06435 81 TA-PDAEIIAVIDADYQVEPDWLKRLVPI-FDDPRVGFV 117 (236)
T ss_pred cC-CCCCEEEEEcCCCCcCHHHHHHHHHH-hcCCCeeEE
Confidence 11 23578999999987753 45555533 233344554
No 54
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=31.20 E-value=89 Score=33.10 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEEEEeccCCC-CCCCCeEEEEecCCCC--cccceEEEecceeeee-----eeCCceeEEEe
Q 000445 1181 VLTGHCSEKDH-EPPQGLQLILGTKSTP--HLVDTLVMANLGYWQM-----KVSPGVWYLQL 1234 (1498)
Q Consensus 1181 LiEGha~d~~~-~pprGlqL~L~t~~~~--~~~DTiVMaNlGYFQl-----kA~PG~w~L~l 1234 (1498)
.|.||..|..+ .|..|+++.|....+. ...-+.+=.+-|-|.+ ...||.|.|..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F 89 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVF 89 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEE
Confidence 49999999987 9999999999754321 1112233333488875 24578888776
No 55
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=31.04 E-value=71 Score=35.45 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCC-EEEEEEcCCcccccccccccc-hhHHHHHHhc
Q 000445 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGF-EYELITYKWPTWLHKQKEKQR-IIWAYKILFL 1426 (1498)
Q Consensus 1349 ~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~-~i~~v~~~wp~~l~~~~~~~r-~~~~y~rLfl 1426 (1498)
+-...+..++.|+++.+-.+++++|+++.-+++..+.++.+...++. .+..+...-+. . ...+.+ ...+...
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~--g-~~~k~~a~n~~~~~--- 84 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNP--G-PGGKARALNEALAA--- 84 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----H--H-HHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCC--C-cchHHHHHHHHHHh---
Confidence 44568888999999643356999999998888888889988877754 46665543101 0 001111 1122222
Q ss_pred cccCCCCCCeEEEEeCCeeecC-CcHHHH
Q 000445 1427 DVIFPLSLEKVIFVDADQVVRA-DMGELY 1454 (1498)
Q Consensus 1427 d~L~P~~v~KvIYLD~D~iv~~-dl~eL~ 1454 (1498)
. .-+-|+++|+|.++.. -|.++.
T Consensus 85 --~---~~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 85 --A---RGDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp --------SEEEEE-SSEEE-CHHHHHHH
T ss_pred --c---CCCEEEEECCCcEECHHHHHHHH
Confidence 1 2689999999998843 355554
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=30.75 E-value=2.5e+02 Score=30.78 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHhcCC----CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHH
Q 000445 1348 HLYERFLKIMILSVLKNTC----RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKI 1423 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~----~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~r 1423 (1498)
.|-+..+..++.|+++... .++.+.|++++=++...+.++.+.++++..+.++... ... ....+...
T Consensus 6 yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~--~n~-------G~~~a~~~ 76 (211)
T cd04188 6 YNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLP--KNR-------GKGGAVRA 76 (211)
T ss_pred cChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcc--cCC-------CcHHHHHH
Confidence 4557888999999987643 4689999999989988899988887776555555543 111 11111111
Q ss_pred HhccccCCCCCCeEEEEeCCeeecC-CcHHHHhC
Q 000445 1424 LFLDVIFPLSLEKVIFVDADQVVRA-DMGELYDM 1456 (1498)
Q Consensus 1424 Lfld~L~P~~v~KvIYLD~D~iv~~-dl~eL~~~ 1456 (1498)
.+- .- .=+-|+++|+|..... .+..|.+.
T Consensus 77 g~~-~a---~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 77 GML-AA---RGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred HHH-Hh---cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 111 00 1278999999987654 57888765
No 57
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.50 E-value=1.6e+02 Score=32.33 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHhcCCCC--eEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHh
Q 000445 1348 HLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILF 1425 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLf 1425 (1498)
.+....+..++.||+..+..+ +.++|++++-++...+.+....+..+..+..+... . ... ....++....+
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~--~--~~~---~g~~~a~n~g~ 78 (229)
T cd04192 6 RNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNS--R--VSI---SGKKNALTTAI 78 (229)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeecc--C--ccc---chhHHHHHHHH
Confidence 345788999999999877655 89999999877777776662222223445444432 1 000 00111111111
Q ss_pred ccccCCCCCCeEEEEeCCeeecC-CcHHHHh
Q 000445 1426 LDVIFPLSLEKVIFVDADQVVRA-DMGELYD 1455 (1498)
Q Consensus 1426 ld~L~P~~v~KvIYLD~D~iv~~-dl~eL~~ 1455 (1498)
.. ..-+-|+++|+|.++.. -|..|..
T Consensus 79 -~~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 79 -KA---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred -HH---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 11 14589999999998754 4555554
No 58
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=29.23 E-value=3.3e+02 Score=29.59 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcC-CEEEEEEcCCcccccccccccc-hhHHHHHHh
Q 000445 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQR-IIWAYKILF 1425 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~-~~i~~v~~~wp~~l~~~~~~~r-~~~~y~rLf 1425 (1498)
.+.+..+..++.||++.+-.++.+.|+++.-++...+.++.+.+.+. ..+.++.-. ... ....+.+ ...+...
T Consensus 10 ~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~~~~~~n~g~~~-- 84 (196)
T cd02520 10 CGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG-EKV--GINPKVNNLIKGYEE-- 84 (196)
T ss_pred CCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC-CcC--CCCHhHHHHHHHHHh--
Confidence 45566788999999976655699999999888888888888887764 345444332 010 0000000 1112221
Q ss_pred ccccCCCCCCeEEEEeCCeeecC-CcHHHHhC
Q 000445 1426 LDVIFPLSLEKVIFVDADQVVRA-DMGELYDM 1456 (1498)
Q Consensus 1426 ld~L~P~~v~KvIYLD~D~iv~~-dl~eL~~~ 1456 (1498)
..-+=++++|+|.++.. -|..|...
T Consensus 85 ------a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 85 ------ARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred ------CCCCEEEEECCCceEChhHHHHHHHH
Confidence 23588999999998744 45555543
No 59
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=27.04 E-value=77 Score=29.55 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=33.2
Q ss_pred EEEEeecCchhHHHHHHHHHHH--HHcCceeEEEEEccCCC
Q 000445 231 AILYGALGSDCFKEFHINLVQA--AKEGKVMYVVRPVLPSG 269 (1498)
Q Consensus 231 vILYg~~~s~~F~~fh~~L~~~--a~~Gki~YV~R~~~~~~ 269 (1498)
+++|.|+..+--..+|+.|.+. ...++++++|||++..+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCC
Confidence 4689999999999999999877 56799999999998763
No 60
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=26.55 E-value=4.7e+02 Score=28.61 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHHHHhcCC-CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhc
Q 000445 1348 HLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFL 1426 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfl 1426 (1498)
.+-+..+..++.|+...+. .++.++|++++-++...+.++.+.+.+. .+.++.... - +-.......+.+.
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~--n---~G~~~a~n~g~~~--- 76 (224)
T cd06442 6 YNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPG--K---RGLGSAYIEGFKA--- 76 (224)
T ss_pred cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCC--C---CChHHHHHHHHHH---
Confidence 3446778899999997665 5799999999888888888877766543 334443321 0 0000001122221
Q ss_pred cccCCCCCCeEEEEeCCeeecC-CcHHHHhC
Q 000445 1427 DVIFPLSLEKVIFVDADQVVRA-DMGELYDM 1456 (1498)
Q Consensus 1427 d~L~P~~v~KvIYLD~D~iv~~-dl~eL~~~ 1456 (1498)
- .=+-|++||+|.++.. .+..+++.
T Consensus 77 ----a-~gd~i~~lD~D~~~~~~~l~~l~~~ 102 (224)
T cd06442 77 ----A-RGDVIVVMDADLSHPPEYIPELLEA 102 (224)
T ss_pred ----c-CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 1 1278999999987643 46666653
No 61
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=26.42 E-value=3.5e+02 Score=28.50 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccc
Q 000445 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1498)
Q Consensus 1349 ~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~ 1428 (1498)
+-...+..++.|+++.+..++.+.|+++.-++...+.++.+.......+..+.-. +.-+... .....+.+.
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~n~g~~~----- 77 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DEGFRKA---KIRNKAIAA----- 77 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC-CcchhHH---HHHHHHHHH-----
Confidence 3467889999999988766789999999888888888887766544433322111 0100000 000111111
Q ss_pred cCCCCCCeEEEEeCCeeecCC-cHHHHhC
Q 000445 1429 IFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1498)
Q Consensus 1429 L~P~~v~KvIYLD~D~iv~~d-l~eL~~~ 1456 (1498)
. .=+-|++||+|.+...+ +..+.+.
T Consensus 78 --a-~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 --A-KGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred --h-cCCEEEEEcCCcccCHHHHHHHHHH
Confidence 1 24789999999987655 5666644
No 62
>PRK06437 hypothetical protein; Provisional
Probab=26.09 E-value=57 Score=30.06 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.9
Q ss_pred HHHHhCCCCCCcEEEEcCEEec
Q 000445 937 LHRQLGVESGANAVITNGRVTF 958 (1498)
Q Consensus 937 ~~~~~~l~~g~~~vv~NGR~i~ 958 (1498)
+.+.+|+++...++.+||++++
T Consensus 26 LL~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 26 IIKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred HHHHcCCCCccEEEEECCEECC
Confidence 3456799999999999999998
No 63
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=25.13 E-value=1.3e+02 Score=34.91 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCCCceEEEEeecCchhHHHHHHHHHHHHHcCceeEEEEE
Q 000445 225 SISSRTAILYGALGSDCFKEFHINLVQAAKEGKVMYVVRP 264 (1498)
Q Consensus 225 ~~~~p~vILYg~~~s~~F~~fh~~L~~~a~~Gki~YV~R~ 264 (1498)
.+..++|+.|.|+..+--+.||..+.+..+.|+++++|.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 3455689999999999999999999988888988765443
No 64
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.92 E-value=3.9e+02 Score=30.70 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=30.7
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEee
Q 000445 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILY 571 (1498)
Q Consensus 534 ~nlVfviDps~~~~~~~~~~l~~~~~~~~P~R~GlVp~ 571 (1498)
..++.+.||..+--.++...+..+.+.|+=+|+=.+|+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 45889999999999888888888888887777744454
No 65
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=24.28 E-value=3.6e+02 Score=36.17 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=68.4
Q ss_pred ceeeEEEeecCcchH---HHHHHHHHHHHhcCC-CCeEEEEEeCCCChhHH----hHHHHHHHHcCC--EEEEEEcCCcc
Q 000445 1337 KTINIFSIASGHLYE---RFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFK----DVIPHMAQEYGF--EYELITYKWPT 1406 (1498)
Q Consensus 1337 ~~iNIf~vasd~~Ye---~~~~imi~Svl~n~~-~~v~F~il~~~lS~~~k----~~l~~l~~~~~~--~i~~v~~~wp~ 1406 (1498)
..+-|+.-++|+.-+ ..+..++.|+...+. .++.|+|+++.=+++.. +.+..+.++++. .+.+..-.+.
T Consensus 124 ~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n- 202 (691)
T PRK05454 124 ARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRN- 202 (691)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcC-
Confidence 446776655554333 468888999997654 57999999988776543 235677777753 3333222110
Q ss_pred cccccccccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCC-cHHHHhCCCCCCceEEe
Q 000445 1407 WLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYT 1466 (1498)
Q Consensus 1407 ~l~~~~~~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~d-l~eL~~~dL~~~~~a~v 1466 (1498)
...|...+..+-+ .. -...+-++-+|||.++..| +..|...=..+--+|++
T Consensus 203 ----~~~KaGNl~~~~~----~~-~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlV 254 (691)
T PRK05454 203 ----VGRKAGNIADFCR----RW-GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLI 254 (691)
T ss_pred ----CCccHHHHHHHHH----hc-CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEE
Confidence 0011111211211 11 1357899999999999877 56666321112235666
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=24.03 E-value=1.3e+02 Score=28.94 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCceEEEEeecCchhHHHHHHHHHHHHHc--CceeEEEEE
Q 000445 227 SSRTAILYGALGSDCFKEFHINLVQAAKE--GKVMYVVRP 264 (1498)
Q Consensus 227 ~~p~vILYg~~~s~~F~~fh~~L~~~a~~--Gki~YV~R~ 264 (1498)
+.|+++++.....+....++..+.+.|++ |++.|+|=-
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd 51 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD 51 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 57899988888887889999999988875 899999843
No 67
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=23.21 E-value=1.5e+02 Score=36.60 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.9
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000445 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1498)
Q Consensus 1179 ~iLiEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVMaNlGYFQlkA~PG~w~L~l 1234 (1498)
+.=|.|+..|.++.|..|..+++.... ...+++=..-|+|.+...||-|.|.+
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~---~~~~~~T~~~G~y~~~l~pG~Y~v~v 346 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK---HICPYRTNVNGEYFLLLLPGKYMINV 346 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC---ceeEEEECCCceEEEecCCeeEEEEE
Confidence 455899999987799999999996432 11233334459999999999999886
No 68
>PF03666 NPR3: Nitrogen Permease regulator of amino acid transport activity 3; InterPro: IPR005365 This protein, also known in yeasts as Rmd11, complexes with NPR2, PF06218 from PFAM. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation [].
Probab=22.84 E-value=3.3e+02 Score=34.64 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=20.3
Q ss_pred hhhhhccchhhHHHHHHHHHHHHhCCCCCCcceEEcc
Q 000445 669 LLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNG 705 (1498)
Q Consensus 669 ~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG 705 (1498)
+..++..+.....++..-+=+.+.+| ..+.+|+
T Consensus 188 ~~~il~~SsLAr~L~~iy~~Is~s~i----A~l~in~ 220 (452)
T PF03666_consen 188 YEEILKKSSLARALKDIYDAISTSGI----AHLTINN 220 (452)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCe----EEEEECC
Confidence 44555555555555555555556666 7789998
No 69
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=22.47 E-value=6.5e+02 Score=26.99 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCCC-ChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhccccC
Q 000445 1352 RFLKIMILSVLKNTCRPVKFWFIKNYL-SPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1498)
Q Consensus 1352 ~~~~imi~Svl~n~~~~v~F~il~~~l-S~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld~L~ 1430 (1498)
.++..++.||+..+-.+..+.|++++- ++...+.+..+.++++ ++++... .- .....+...-+- .
T Consensus 13 ~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~--~n-------~G~~~a~N~g~~---~ 78 (201)
T cd04195 13 EFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLE--KN-------RGLGKALNEGLK---H 78 (201)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcC--cc-------ccHHHHHHHHHH---h
Confidence 589999999998775567778888776 5566777787777665 5555442 10 111122111110 1
Q ss_pred CCCCCeEEEEeCCeeecC-CcHHHH
Q 000445 1431 PLSLEKVIFVDADQVVRA-DMGELY 1454 (1498)
Q Consensus 1431 P~~v~KvIYLD~D~iv~~-dl~eL~ 1454 (1498)
..-+=|+++|+|.+... -+..++
T Consensus 79 -a~gd~i~~lD~Dd~~~~~~l~~~~ 102 (201)
T cd04195 79 -CTYDWVARMDTDDISLPDRFEKQL 102 (201)
T ss_pred -cCCCEEEEeCCccccCcHHHHHHH
Confidence 13578999999987653 444444
No 70
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.21 E-value=9.3e+02 Score=25.32 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccchhHHHHHHhcc
Q 000445 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1427 (1498)
Q Consensus 1348 ~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfld 1427 (1498)
.+-+..+..++.|+++.+-.++.+.|++++-+++..+.++.+... .+.++.-. . .........+.+.
T Consensus 7 ~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~---~~~~~~~~---~---~g~~~a~n~~~~~---- 73 (202)
T cd06433 7 YNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK---ITYWISEP---D---KGIYDAMNKGIAL---- 73 (202)
T ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh---cEEEEecC---C---cCHHHHHHHHHHH----
Confidence 455788999999999877656899999998888888888777643 12222211 0 0000001112221
Q ss_pred ccCCCCCCeEEEEeCCeeec-CCcHHHH
Q 000445 1428 VIFPLSLEKVIFVDADQVVR-ADMGELY 1454 (1498)
Q Consensus 1428 ~L~P~~v~KvIYLD~D~iv~-~dl~eL~ 1454 (1498)
..-+-|+++|+|.++. ..+..+.
T Consensus 74 ----a~~~~v~~ld~D~~~~~~~~~~~~ 97 (202)
T cd06433 74 ----ATGDIIGFLNSDDTLLPGALLAVV 97 (202)
T ss_pred ----cCCCEEEEeCCCcccCchHHHHHH
Confidence 1347899999998775 4577776
No 71
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=21.82 E-value=3.2e+02 Score=33.18 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=62.3
Q ss_pred CceeeEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCC-cccccccc
Q 000445 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKW-PTWLHKQK 1412 (1498)
Q Consensus 1336 ~~~iNIf~vasd~~Ye~~~~imi~Svl~n~~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~w-p~~l~~~~ 1412 (1498)
+-+|=+.++|.| .|..++.-.+.|-=+|=- .+|+|||+.+.. +.+|.+.-.-+.++..+.+.- ..| |.
T Consensus 98 n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p-----~~vP~i~l~~~r~~~V~~v~~~~~W---qd 168 (337)
T PF03414_consen 98 NITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQP-----SKVPRIELGPGRRLKVFEVQEEKRW---QD 168 (337)
T ss_dssp T-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-G-----GGS------TTEEEEEEE-SGGSSH---HH
T ss_pred CceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCch-----hhCCccccCCCceeEEEEecccCCC---cc
Confidence 445666666776 788899999999877733 579999999742 335655544456677666530 122 21
Q ss_pred cccchhHHHHHHhccccCCCCCCeEEEEeCCeeecCCcHH-HHhCCCCCCceEEee
Q 000445 1413 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIKGRPLAYTP 1467 (1498)
Q Consensus 1413 ~~~r~~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~dl~e-L~~~dL~~~~~a~v~ 1467 (1498)
..-+++.+........++ .++|-+..+|+|++..+++.. . | |..+|...
T Consensus 169 ~sm~Rm~~i~~~i~~~~~-~EvDYLFc~dvd~~F~~~vGvE~----L-g~lva~LH 218 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQ-HEVDYLFCMDVDMVFQDHVGVEI----L-GDLVATLH 218 (337)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH-SEEEEEESSEEE-S-B-GGG------SSEEEEES
T ss_pred chhHHHHHHHHHHHHHHh-hcCCEEEEEecceEEecccCHHH----H-HHHHHHhC
Confidence 111222222222223333 479999999999998876542 1 1 44666663
No 72
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=20.42 E-value=4.8e+02 Score=32.83 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=64.8
Q ss_pred eeeEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEeCCCChhHHhHHHHHHHHcCCEEEEEEcCCcccccccccccch
Q 000445 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI 1417 (1498)
Q Consensus 1338 ~iNIf~vasd~~Ye~~~~imi~Svl~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~ 1417 (1498)
.+-|+..+ +|.+..+..++.|+++.+-.++.+.+++++-+++..+.++.+.+++. .++++... . ++ -+.+-
T Consensus 76 ~vsViIP~--yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~--~---n~-Gka~A 146 (444)
T PRK14583 76 LVSILVPC--FNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLA--H---NQ-GKAIA 146 (444)
T ss_pred cEEEEEEe--CCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeC--C---CC-CHHHH
Confidence 36666544 45567789999999976655799999999888888888888877653 35544432 1 01 01111
Q ss_pred -hHHHHHHhccccCCCCCCeEEEEeCCeeecCC-cHHHH
Q 000445 1418 -IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1498)
Q Consensus 1418 -~~~y~rLfld~L~P~~v~KvIYLD~D~iv~~d-l~eL~ 1454 (1498)
..+... ..-|-++.+|+|.+...| +.++.
T Consensus 147 lN~gl~~--------a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 147 LRMGAAA--------ARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred HHHHHHh--------CCCCEEEEECCCCCcCHHHHHHHH
Confidence 111111 246899999999987654 55554
No 73
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=20.11 E-value=2.6e+02 Score=34.66 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=38.5
Q ss_pred eEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000445 1179 ALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1498)
Q Consensus 1179 ~iLiEGha~d~~~-~pprGlqL~L~t~~~~~~~DTiVMaNlGYFQlkA~PG~w~L~l 1234 (1498)
|.=|.|.-.|..+ .|..|..+.+..... .|++ .--|.|.+...||-|.|++
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~~----~~~T-d~~G~f~~~l~pG~ytl~v 347 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADINH----PVTT-YKDGDYWRLLVPGTYKVTA 347 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCcC----ceEE-CCCccEEEccCCeeEEEEE
Confidence 4567888889754 999999999865332 3333 2349999999999999986
No 74
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=20.06 E-value=3.5e+02 Score=30.33 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHhhcCCChHHHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEec
Q 000445 902 EFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTF 958 (1498)
Q Consensus 902 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~i~ 958 (1498)
+.+...|++.+.+...+.+-.... .+... ....+.+|+. |.+++++|||++-
T Consensus 128 ~~a~~~Gld~~~f~~~l~s~~~~~---~v~~~-~~~a~~~gI~-gtPtfiInGky~v 179 (207)
T PRK10954 128 DVFIKAGVKGEDYDAAWNSFVVKS---LVAQQ-EKAAADLQLR-GVPAMFVNGKYMV 179 (207)
T ss_pred HHHHHcCCCHHHHHHHHhChHHHH---HHHHH-HHHHHHcCCC-CCCEEEECCEEEE
Confidence 334567888888887765432221 11222 2234556875 8899999999974
Done!