Query 000445
Match_columns 1498
No_of_seqs 234 out of 711
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 15:52:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000445.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_225-229//hhsearch_pdb/000445hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 194.7 15.9 146 1337-1484 4-160 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 178.8 11.8 144 1339-1485 1-156 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 103.0 14.0 129 1338-1484 4-135 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 86.1 12.3 126 1342-1484 8-136 (263)
5 3gmf_A Protein-disulfide isome 1.0 1 1 33.2 7.2 47 218-266 7-59 (205)
6 3gha_A Disulfide bond formatio 1.0 1 1 27.0 16.2 41 799-839 30-73 (202)
7 3bci_A Disulfide bond protein 1.0 1 1 26.9 16.0 17 231-247 15-31 (186)
8 3hz8_A Thiol:disulfide interch 1.0 1 1 24.7 18.2 68 902-978 114-182 (193)
9 3hd5_A Thiol:disulfide interch 1.0 1 1 24.6 14.4 72 903-980 113-185 (195)
10 3gyk_A 27KDA outer membrane pr 1.0 1 1 24.6 14.7 41 799-840 23-63 (175)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=194.73 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=125.2
Q ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 503299951384069999999999985199-8729999938999568748989898809889999848860001131111
Q 000445 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1498)
Q Consensus 1337 ~~iNIf~vasd~~ye~~~~vmi~Svl~n~~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1415 (1498)
.+|||+. ++|++|++++++||.||++|++ .+++|||+++++|++.++.|+.+.+.++++|+++.+++ .++.......
T Consensus 4 m~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 81 (276)
T 3tzt_A 4 MADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFSFAKVTD 81 (276)
T ss_dssp -CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECH-HHHHCCCCCC
T ss_conf 0678999-9578689999999999998499876489998289999999999999987599899998288-9971486446
Q ss_pred C-HHHHHHHHHCCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCC-------CCC--CCCCCCH
Q ss_conf 0-3688899830211779988699980873103790777708999982699311468888-------776--5665520
Q 000445 1416 R-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKD-------MDG--YRFWRQG 1484 (1498)
Q Consensus 1416 r-~~~~y~rLfld~LlP~~v~kvIYLD~D~iv~~dl~eL~~~dl~~~~~a~~~~~~~~~~-------~~g--~~yw~~G 1484 (1498)
| ..++|.|||++.++|.+++||||||||+||++|+.+||++|++++++|||++|....- ..+ ..|||+|
T Consensus 82 ~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsG 160 (276)
T 3tzt_A 82 RYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSG 160 (276)
T ss_dssp --CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 5489999999999970011684999918856417989996258899869999823441177888874379888747720
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=178.75 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=121.8
Q ss_pred EEEEEEECCCCHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC
Q ss_conf 32999513840699999999999-8519987299999389995687489898988098899998488600011311-110
Q 000445 1339 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 1416 (1498)
Q Consensus 1339 iNIf~vasd~~ye~~~~vmi~Sv-l~n~~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~-~~r 1416 (1498)
|||+. ++|++|++++.+|+.|| ++|++.+++|||+++++|++.++.|+.+...++.+++++.++ +.++...+. ..+
T Consensus 1 m~I~~-~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVF-AADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEE-EECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CEEEE-ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-HHHHHCCCCCCCC
T ss_conf 94999-877868999999999899976998835999989999999999999998759989999848-8997138654242
Q ss_pred -HHHHHHHHHCCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCC--CC------C-CCCCCCCCHH
Q ss_conf -36888998302117799886999808731037907777089999826993114688--88------7-7656655206
Q 000445 1417 -IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNN--KD------M-DGYRFWRQGF 1485 (1498)
Q Consensus 1417 -~~~~y~rLfld~LlP~~v~kvIYLD~D~iv~~dl~eL~~~dl~~~~~a~~~~~~~~--~~------~-~g~~yw~~Gy 1485 (1498)
..++|.|||++.+|| +++||||||||+||++||.+||++|++|+++|||+.|... .. + .+..|||+|.
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv 156 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGV 156 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHH-HCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 7899999999999854-14879998178676267799945287886799984542244199998547888984686444
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=102.99 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=90.8
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CC
Q ss_conf 032999513840699999999999851998-729999938999568748989898809889999848860001131--11
Q 000445 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK--EK 1414 (1498)
Q Consensus 1338 ~iNIf~vasd~~ye~~~~vmi~Svl~n~~~-~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~--~~ 1414 (1498)
.++|.. ++|.+|...+.+++.||++|++. ++.| ++++.++++.++.|..+ +..+..|..--...-.... .+
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s~~~l~v-lv~~~is~~~~~~L~~~----~~~v~~v~~l~~~~~~~~~~~~~ 77 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRTSRRLAV-LTTPQVSDTMRKALEIV----FDEVITVDILDSGDSAHLTLMKR 77 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEE-EECTTSCHHHHHHHHHH----CSEEEECCTTSTTSTTHHHHHHC
T ss_pred EEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCHHHHHHHHHH----CCEEEEEEECCCCCHHHCCCCCC
T ss_conf 499999-8488799999999999998589998899-98499999999899985----99899986368732211020246
Q ss_pred CCHHHHHHHHHCCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 1036888998302117799886999808731037907777089999826993114688887765665520
Q 000445 1415 QRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQG 1484 (1498)
Q Consensus 1415 ~r~~~~y~rLfld~LlP~~v~kvIYLD~D~iv~~dl~eL~~~dl~~~~~a~~~~~~~~~~~~g~~yw~~G 1484 (1498)
.+...+|.||++..+ + +++||||||||++|.+||.+||+++ .+||+|.+.- ..|+|+|
T Consensus 78 ~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~~------~~~fNsG 135 (333)
T 1ll2_A 78 PELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPGW------PDCFNSG 135 (333)
T ss_dssp GGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSSS------TTSEEEE
T ss_pred CCHHHHHHHHHHHHH-C-CCCEEEEEECCEEECCCHHHHHCCC----CEEEEECCCC------CCCEEEE
T ss_conf 416888899998675-2-7774999838987654999984887----6158745788------7651125
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=86.11 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=86.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCC-CCCCCHH
Q ss_conf 995138406999999999998519987299999-3899956874898989880988999984-886000113-1111036
Q 000445 1342 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITY-KWPTWLHKQ-KEKQRII 1418 (1498)
Q Consensus 1342 f~vasd~~ye~~~~vmi~Svl~n~~~~v~F~il-~~~lS~~~k~~l~~l~~~~~~~i~~v~~-~wp~~l~~~-~~~~r~~ 1418 (1498)
++.++|++|...+.+++.|+.+|++ ..++.++ .+.+|++.++.|+.+ +.++..|.. +.+.-.... ..+.+..
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~~~rp~~~ 82 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTLMKRPELG 82 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHHTTCTTGG
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECCCCCHHHHHHHCCCCHH
T ss_conf 9999788899999999999998699-98789996278999999999973----995899653587345556530375166
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 888998302117799886999808731037907777089999826993114688887765665520
Q 000445 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQG 1484 (1498)
Q Consensus 1419 ~~y~rLfld~LlP~~v~kvIYLD~D~iv~~dl~eL~~~dl~~~~~a~~~~~~~~~~~~g~~yw~~G 1484 (1498)
.+|.+|++..+. ..+||||||||++|.+|+.+||+++ .+||++...- ..|+|+|
T Consensus 83 ~~~~kl~~~~l~--~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~------~~~fNsG 136 (263)
T 3u2u_A 83 VTLTKLHCWSLT--QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW------PDCFNSG 136 (263)
T ss_dssp GGGGGGGGGGCT--TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS------TTSEEEE
T ss_pred HHHHHHHHCCCC--CCCEEEEECCCEEECCCHHHHHCCC----CCEEECCCCC------CCCCCCE
T ss_conf 775998864024--7652899808985135979885787----5147035788------7655674
No 5
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=1.00 E-value=1 Score=33.16 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=23.0
Q ss_pred CEECCCCCCCCC-EEEEEEECCCHHHHHHHHHHHHHH-----HCCCEEEEEEECC
Q ss_conf 712157889983-599993069442899999999998-----8196369998706
Q 000445 218 DHIHAESSISSR-TAILYGALGSDCFKEFHINLVQAA-----KEGKVMYVVRPVL 266 (1498)
Q Consensus 218 Dhv~~~s~~~~p-~vILYg~i~s~~F~~fh~~L~~~a-----~~gki~YV~R~~~ 266 (1498)
++++| +.++| ++|.|.|+..|-.+.||..+.+.- +.|+++|+||++|
T Consensus 7 ~~~~G--~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p 59 (205)
T 3gmf_A 7 HHLLG--NPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV 59 (205)
T ss_dssp EEEES--CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred CCEEC--CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 84125--999996999988999978999999988999998453782899998488
No 6
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=1.00 E-value=1 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=16.4
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCC---CCCEEEEEEECC
Q ss_conf 32799994178986899999999998539---996299999759
Q 000445 799 PVTHLLAVDVTSKKGMKLLHEGIRFLIGG---SNGARLGVLFSA 839 (1498)
Q Consensus 799 ~~t~~vv~Df~s~~g~~~l~~al~~l~~~---~~~~Ri~~i~n~ 839 (1498)
++|+....||.++-..++-......+++. ...+|+.+.|-|
T Consensus 30 ~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p 73 (202)
T 3gha_A 30 PVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM 73 (202)
T ss_dssp SEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 98999987999860898998755999998243884999998467
No 7
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=1.00 E-value=1 Score=26.90 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=5.6
Q ss_pred EEEEEECCCHHHHHHHH
Q ss_conf 99993069442899999
Q 000445 231 AILYGALGSDCFKEFHI 247 (1498)
Q Consensus 231 vILYg~i~s~~F~~fh~ 247 (1498)
++.|.|+..|-...|+.
T Consensus 15 i~~f~D~~Cp~C~~~~~ 31 (186)
T 3bci_A 15 VVVYGDYKCPYCKELDE 31 (186)
T ss_dssp EEEEECTTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHH
T ss_conf 99987999860789999
No 8
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=1.00 E-value=1 Score=24.66 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 777621-99947774105754303577877789999998818999981799737774499999989745999999999
Q 000445 902 EFAEAN-GLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTFPIDESTFLSHDLSLLESVEF 978 (1498)
Q Consensus 902 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ii~NGR~i~~~~~~~f~~~Df~~L~~~e~ 978 (1498)
+.+... |++.+.+...+.+-. ....+..... ..+.+|+. |.+++++||+++.-. . +.++|..++....
T Consensus 114 ~~a~~~~Gld~~~~~~~~~s~~---~~~~v~~~~~-~a~~~gv~-gtPt~vvng~~~~~~---~-~~e~l~~~i~~ll 182 (193)
T 3hz8_A 114 KWLGEQTAFDGKKVLAAYESPE---SQARADKMQE-LTETFQID-GVPTVIVGGKYKVEF---A-DWESGMNTIDLLA 182 (193)
T ss_dssp HHHHHCTTTTHHHHHHHHHSHH---HHHHHHHHHH-HHHHTTCC-SSSEEEETTTEEECC---S-SHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCHH---HHHHHHHHHH-HHHHHCCC-CCCEEEECCEEEECC---C-CHHHHHHHHHHHH
T ss_conf 9999836999999999971978---9999999999-99993899-677799999898647---9-9999999999999
No 9
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=1.00 E-value=1 Score=24.64 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCH-HHHHHHHHHHHHH
Q ss_conf 77621999477741057543035778777899999988189999817997377744999999897-4599999999984
Q 000445 903 FAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTFPIDESTFLS-HDLSLLESVEFKH 980 (1498)
Q Consensus 903 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ii~NGR~i~~~~~~~f~~-~Df~~L~~~e~~~ 980 (1498)
.++..+++.+.+...+.+-. ....+..... ..+.+|+. |.+++++||+++.-. ....+. ++|..++.+-..+
T Consensus 113 ~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~-~a~~~gv~-gtPt~ving~~~~~g-~~~~~~~e~~~~~i~~L~~~ 185 (195)
T 3hd5_A 113 WAASQGVDRAKFDSVFDSFS---VQTQVQRASQ-LAEAAHID-GTPAFAVGGRYMTSP-VLAGNDYAGALKVVDQLIVQ 185 (195)
T ss_dssp HHHHTTCCHHHHHHHHTCHH---HHHHHHHHHH-HHHHTTCC-SSSEEEETTTEEECT-TTTTGGGTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCHH---HHHHHHHHHH-HHHHHCCC-CCCEEEECCEEEECC-CCCCCHHHHHHHHHHHHHHH
T ss_conf 99990989999999970889---9999999999-99980998-676699999998476-55688488999999999998
No 10
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=1.00 E-value=1 Score=24.58 Aligned_cols=41 Identities=15% Similarity=-0.057 Sum_probs=20.3
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 327999941789868999999999985399962999997599
Q 000445 799 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSAS 840 (1498)
Q Consensus 799 ~~t~~vv~Df~s~~g~~~l~~al~~l~~~~~~~Ri~~i~n~~ 840 (1498)
++++.+..|+.++...+......+.++ ...++|+.+++-|-
T Consensus 23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~-~~~~v~~~~~~~p~ 63 (175)
T 3gyk_A 23 DVTVVEFFDYNCPYCRRAMAEVQGLVD-ADPNVRLVYREWPI 63 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHH-HCTTEEEEEEECCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEECCC
T ss_conf 989999888999127888999999998-68987999886887
Done!